BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005268
         (705 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/705 (77%), Positives = 617/705 (87%), Gaps = 1/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS YV  G   EA+ CFYQ  L S +RPDFYTFPPVLKAC  LVDG+KIHC   KLGF+
Sbjct: 188 MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQ 247

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+VFVAASL+HMY RFG   +AR LFDDMP RD GSWNAMISG  Q+GNA +ALD+LDEM
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           RLEG+ M+ +TV SILPVC +  +I + +LIHLY++KHGLEF+LFVSN LINMYAKFG +
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A + F QM   DVVSWNSIIAAYEQ++DP+TAHGFF  MQ  G QPDLLTLVSL SIV
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           AQ  DC+NSRSVHGFIMRRGW MEDV+IGNAVVDMYAKLG+++SA  VFE +PVKDVISW
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NTLITGYAQNGLASEAIEV++MMEEC EI PNQGT+VSILPAY+HVGAL+QG+KIH RVI
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K  L  DVFVATCL+D+YGKCGR+ DAMSLFYQVP+ SSV WNAIISCHGIHG  +K L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +MLDEGV+PDH+TFVSLL+ACSHSG V EG+  F +MQ E+GIKP LKHYGCMVDL 
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLL 666

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG+L MA++FI++MP++PDASIWGALLGACRIHGN+ELG  ASDRLFEVDS+NVGYYV
Sbjct: 667 GRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYANVGKWEGVD+VRSLAR+RGLKKTPGWS+IEVN KVD+FYTGN++HPK ++IY+
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           ELR LTAKMKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGIIS+PPKSPI+IFK
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFK 846

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCHN TKFIS+IT+REI+VRDSNRFHHFKDGICSCGDYW
Sbjct: 847 NLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 261/517 (50%), Gaps = 20/517 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            K +H  ++  G    +F++  L+++Y   G  +++R  FD +P +D  +WN+MIS Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 107 SGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +G+  EA+    ++ L   +  D  T   +L  C     ++ G  IH +  K G ++N+F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVF 251

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V+ +LI+MY++FG    A  +FD M  RD+ SWN++I+   Q+ +   A      M+  G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I+ + +T+VS+  +  QL D   +  +H ++++ G    D+ + NA+++MYAK G +  A
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDA 370

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              F+ + + DV+SWN++I  Y QN     A   F  M + N   P+  T VS+    + 
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVAQ 429

Query: 346 VGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
               +    +H  ++ +  L  DV +   +VDMY K G +D A  +F  +P    + WN 
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 489

Query: 405 IISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +I+ +  +G   +A+  ++ M + + + P+  T+VS+L A +H G + +G +   +    
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK---IHGRV 546

Query: 464 FGIKPHLKHY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
                HL  +   C++D++G+ G L  A +    +P +  +  W A++    IHG+ E  
Sbjct: 547 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKT 605

Query: 522 AVASDRLFE--VDSENVGYYVLMSNI----YANVGKW 552
                 + +  V  ++V +  L+S      +   GKW
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score = 1149 bits (2971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/705 (76%), Positives = 615/705 (87%), Gaps = 1/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS YV  G   EA+ CFYQ  L S +RPDFYTFPPVLKAC  LVDG++IHC   KLGF+
Sbjct: 188 MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQ 247

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+VFVAASL+HMY RFG   +AR LFDDMP RD GSWNAMISG  Q+GNA +ALD+LDEM
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           RLEG+ M+ +TV SILPVC +  +I + +LIHLY++KHGLEF+LFVSN LINMYAKFG +
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A + F QM   DVVSWNSIIAAYEQ++DP+TAHGFF  MQ  G QPDLLTLVSL SIV
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           AQ  DC+NSRSVHGFIMRRGW MEDV+IGNAVVDMYAKLG+++SA  VFE + VKDVISW
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISW 487

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NTLITGYAQNGLASEAIEV++MMEEC EI PNQGT+VSILPAY+HVGAL+QG++IH RVI
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI 547

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K  L  DVFVATCL+D+YGKCGR+ DAMSLFYQVP+ SSV WNAIISCHGIHG  +K L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +MLDEGV+PDH+TFVSLL+ACSHSG V EG+  F +MQ E+GIKP LKHYGCMVDL 
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLL 666

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG+L MA+ FI++MP++PDASIWGALLGACRIHGN+ELG  ASDRLFEVDS+NVGYYV
Sbjct: 667 GRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYANVGKWEGVD+VRSLAR+RGLKKTPGWS+IEVN KVD+FYTGN++HPK ++IY+
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           ELR LTAKMKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGIIS+PPKSPI+IFK
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFK 846

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCHN TKFIS+IT+REI+VRDSNRFHHFKDGICSCGDYW
Sbjct: 847 NLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 260/517 (50%), Gaps = 20/517 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            K +H  ++  G    +F++  L+++Y   G  +++R  FD +P +D  +WN+MIS Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 107 SGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +G+  EA+    ++ L   +  D  T   +L  C     ++ G  IH +  K G ++N+F
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVF 251

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V+ +LI+MY++FG    A  +FD M  RD+ SWN++I+   Q+ +   A      M+  G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I+ + +T+VS+  +  QL D   +  +H ++++ G    D+ + NA+++MYAK G +  A
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDA 370

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              F+ + + DV+SWN++I  Y QN     A   F  M + N   P+  T VS+    + 
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVAQ 429

Query: 346 VGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
               +    +H  ++ +  L  DV +   +VDMY K G +D A  +F  +     + WN 
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 405 IISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +I+ +  +G   +A+  ++ M + + + P+  T+VS+L A +H G + +G R   +    
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR---IHGRV 546

Query: 464 FGIKPHLKHY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
                HL  +   C++D++G+ G L  A +    +P +  +  W A++    IHG+ E  
Sbjct: 547 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKT 605

Query: 522 AVASDRLFE--VDSENVGYYVLMSNI----YANVGKW 552
                 + +  V  ++V +  L+S      +   GKW
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/705 (76%), Positives = 613/705 (86%), Gaps = 1/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS YVR G   EA+DCFYQ  L +  + DFYTFPPVLKAC+ LVDG+KIHC V KLGF+
Sbjct: 145 MISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQ 204

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           WDVFVAASL+HMY RFG   +AR LFDDMP RD GSWNAMISG  Q+GNA +ALD+LDEM
Sbjct: 205 WDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 264

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           RLEG++MD +TVASILPVCA+  +I +  LIHLY++KHGLEF LFVSN LINMYAKFG +
Sbjct: 265 RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNL 324

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A +VF QM  RDVVSWNSIIAAYEQ++DP+TA GFF  MQ  G++PDLLTLVSL SI 
Sbjct: 325 GDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIA 384

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           AQ  D +NSRSVHGFIMRRGW ME V+IGNAV+DMYAKLG+I+SA  VF  +PVKDV+SW
Sbjct: 385 AQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSW 444

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NTLI+GY QNGLASEAIEV++MMEEC EI  NQGT+VSIL AY+HVGAL+QG++IH  +I
Sbjct: 445 NTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI 504

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K  L  DVFV TCL+D+YGKCGR+ DAM LFYQVPR SSVPWNAIISCHGIHG G+KAL 
Sbjct: 505 KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALK 564

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            FR+M DEGV+PDH+TF+SLL+ACSHSGLV EG+ +FH+MQ E+GIKP LKHYGCMVDL 
Sbjct: 565 LFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLL 623

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG L MA++FI++MP+ PDASIWGALLGACRIHGN+ELG  ASDRLFEVDSENVGYYV
Sbjct: 624 GRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYV 683

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYANVGKWEGVD+VRSLAR+RGLKKTPGWSSIEVN +VDIFYTGN++HPK ++IY 
Sbjct: 684 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYA 743

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           ELR LTAKMKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGIIS+PPKS I+IFK
Sbjct: 744 ELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFK 803

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCHN TKFIS+ITEREI+VRDS RFHHFK+GICSCGDYW
Sbjct: 804 NLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 257/492 (52%), Gaps = 16/492 (3%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  +  +C   +  K++H  ++  G     F++  L+++Y   G  +++R  FD +  +D
Sbjct: 79  FNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKD 138

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIH 152
             +WN+MIS Y ++G+  EA+D   ++ L      D  T   +L  C     ++ G  IH
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIH 195

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
            ++ K G ++++FV+ +LI+MY++FG +  A  +FD M  RD+ SWN++I+   Q+ +  
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A      M+  GI  D +T+ S+  + AQL D   +  +H ++++ G   E + + NA+
Sbjct: 256 QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE-LFVSNAL 314

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           ++MYAK G +  A  VF+ + ++DV+SWN++I  Y QN     A   F  M + N + P+
Sbjct: 315 INMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKM-QLNGLEPD 373

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLF 391
             T VS+    +     +    +H  +++     + V +   ++DMY K G ID A  +F
Sbjct: 374 LLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVF 433

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLV 450
             +P    V WN +IS +  +G   +A+  +R M +   ++ +  T+VS+L A +H G +
Sbjct: 434 NLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGAL 493

Query: 451 SEGQR-YFHMMQEEFGIKPHLKHY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            +G R + H+++       HL  +   C++DL+G+ G L  A      +P R  +  W A
Sbjct: 494 QQGMRIHGHLIKTNL----HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNA 548

Query: 508 LLGACRIHGNME 519
           ++    IHG+ E
Sbjct: 549 IISCHGIHGHGE 560


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/705 (70%), Positives = 603/705 (85%), Gaps = 3/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQ-FTLTSG--LRPDFYTFPPVLKACRNLVDGKKIHCSVLKL 57
           +IS YVR G+  EA++C  Q F++  G  LRPDFYTFPP+LKAC +LVDGKK+HC V K+
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKM 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFVAASL+H+Y R+G+ +VA K+F DMPV+D GSWNAMISG+CQ+GNA  AL +L
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + M+ EGV MD ITVASILPVCA+SD++++G+LIHL+++KHGL+ ++FVSN LINMY+KF
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  VFDQM  RD+VSWNSIIAAYEQ+NDP TA  FF  MQ  GI+PDLLT+VSLT
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +QL+D R SRS+ GF++RR W  +DV+IGNA+V+MYAKLG +N A  VF+ LP KD 
Sbjct: 331 SIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT 390

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWNTL+TGY QNGLASEAI+ + MMEEC +  PNQGT+VSI+PAYSHVGAL+QG+KIHA
Sbjct: 391 ISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           ++IKN L  DVFVATCL+D+YGKCGR++DAMSLFY++PR +SVPWNAII+  GIHG+G++
Sbjct: 451 KLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEE 510

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F+ ML E V+ DHITFVSLL+ACSHSGLV EGQ+ F +MQ+E+GIKP LKHYGCMV
Sbjct: 511 ALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMV 570

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG+L  A+  ++NMP++PDASIWGALL AC+I+GN ELG +ASDRL EVDSENVG
Sbjct: 571 DLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVG 630

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SNIYAN  KWEGV +VRSLARDRGL+KTPGWSS+ V +K ++FYTGN+THPKY +
Sbjct: 631 YYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTE 690

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL+ L+AKMKSLGYVPD SFV QD+EEDEKE IL SHSERLAIAFGIIS+PP+SPI+
Sbjct: 691 IYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIR 750

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IFKNLRVCGDCHN TK+IS+I+EREI+VRDSNRFHHFKDGICSC 
Sbjct: 751 IFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/541 (28%), Positives = 291/541 (53%), Gaps = 17/541 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           L ++V  FY+ + T+ L  D   F  +  +C N+   KK+H  +L  G   ++ ++  L+
Sbjct: 4   LLKSVSKFYK-SATTSLHKD-ADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLI 61

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM--RLEGVSMD 128
           ++Y   G  +++R  FD +  ++  SWN++IS Y + G   EA++ ++++     G  + 
Sbjct: 62  NLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLR 121

Query: 129 P--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           P   T   IL  C    +++ G  +H  + K G E ++FV+ +L+++Y+++G++  A +V
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M  +DV SWN++I+ + Q+ +   A G    M+  G++ D +T+ S+  + AQ +D 
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            N   +H  +++ G    DV + NA+++MY+K G +  A  VF+ + V+D++SWN++I  
Sbjct: 239 INGVLIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLC 365
           Y QN   S A+  F+ M +   I P+  T VS+   +S +   R    I   VI +  L 
Sbjct: 298 YEQNNDPSTALRFFKGM-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLD 356

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DV +   LV+MY K G ++ A ++F Q+PR  ++ WN +++ +  +G   +A++ +  M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 426 LD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
            +     P+  T+VS++ A SH G + +G +  H    +  +   +    C++DL+G+ G
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCG 475

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG-AVASDRLFE-VDSENVGYYVLM 542
            L  A +    +P R  +  W A++ +  IHG  E    +  D L E V ++++ +  L+
Sbjct: 476 RLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 543 S 543
           S
Sbjct: 535 S 535


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score = 1054 bits (2726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/701 (70%), Positives = 600/701 (85%), Gaps = 3/701 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQ-FTLTSG--LRPDFYTFPPVLKACRNLVDGKKIHCSVLKL 57
           +IS YVR G+  EA++C  Q F++  G  LRPDFYTFPP+LKAC +LVDGKK+HC V K+
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKM 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFVAASL+H+Y R+G+ +VA K+F DMPV+D GSWNAMISG+CQ+GNA  AL +L
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + M+ EGV MD ITVASILPVCA+SD++++G+LIHL+++KHGL+ ++FVSN LINMY+KF
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  VFDQM  RD+VSWNSIIAAYEQ+NDP TA  FF  MQ  GI+PDLLT+VSLT
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +QL+D R SRS+ GF++RR W  +DV+IGNA+V+MYAKLG +N A  VF+ LP KD 
Sbjct: 331 SIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT 390

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWNTL+TGY QNGLASEAI+ + MMEEC +  PNQGT+VSI+PAYSHVGAL+QG+KIHA
Sbjct: 391 ISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           ++IKN L  DVFVATCL+D+YGKCGR++DAMSLFY++PR +SVPWNAII+  GIHG+G++
Sbjct: 451 KLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEE 510

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F+ ML E V+ DHITFVSLL+ACSHSGLV EGQ+ F +MQ+E+GIKP LKHYGCMV
Sbjct: 511 ALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMV 570

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG+L  A+  ++NMP++PDASIWGALL AC+I+GN ELG +ASDRL EVDSENVG
Sbjct: 571 DLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVG 630

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SNIYAN  KWEGV +VRSLARDRGL+KTPGWSS+ V +K ++FYTGN+THPKY +
Sbjct: 631 YYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTE 690

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL+ L+AKMKSLGYVPD SFV QD+EEDEKE IL SHSERLAIAFGIIS+PP+SPI+
Sbjct: 691 IYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIR 750

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           IFKNLRVCGDCHN TK+IS+I+EREI+VRDSNRFHHFKDGI
Sbjct: 751 IFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/541 (28%), Positives = 291/541 (53%), Gaps = 17/541 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           L ++V  FY+ + T+ L  D   F  +  +C N+   KK+H  +L  G   ++ ++  L+
Sbjct: 4   LLKSVSKFYK-SATTSLHKD-ADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLI 61

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM--RLEGVSMD 128
           ++Y   G  +++R  FD +  ++  SWN++IS Y + G   EA++ ++++     G  + 
Sbjct: 62  NLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLR 121

Query: 129 P--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           P   T   IL  C    +++ G  +H  + K G E ++FV+ +L+++Y+++G++  A +V
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M  +DV SWN++I+ + Q+ +   A G    M+  G++ D +T+ S+  + AQ +D 
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            N   +H  +++ G    DV + NA+++MY+K G +  A  VF+ + V+D++SWN++I  
Sbjct: 239 INGVLIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLC 365
           Y QN   S A+  F+ M +   I P+  T VS+   +S +   R    I   VI +  L 
Sbjct: 298 YEQNNDPSTALRFFKGM-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLD 356

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DV +   LV+MY K G ++ A ++F Q+PR  ++ WN +++ +  +G   +A++ +  M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 426 LD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
            +     P+  T+VS++ A SH G + +G +  H    +  +   +    C++DL+G+ G
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCG 475

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG-AVASDRLFE-VDSENVGYYVLM 542
            L  A +    +P R  +  W A++ +  IHG  E    +  D L E V ++++ +  L+
Sbjct: 476 RLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 543 S 543
           S
Sbjct: 535 S 535


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/705 (70%), Positives = 594/705 (84%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+S YVR GR  +++DC  +    SG+RPDFYTFPPVLKAC +L DG+K+HC VLK+GFE
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFE 179

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV+VAASL+H+Y RFG   VA K+F DMPVRD GSWNAMISG+CQ+GN  EAL +LD M
Sbjct: 180 HDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRM 239

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + E V MD +TV+S+LP+CA+S++++ G+L+HLY++KHGLE ++FVSN LINMY+KFG +
Sbjct: 240 KTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRL 299

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           + A RVFD M  RD+VSWNSIIAAYEQ++DP+TA GFF  M   G++PDLLT+VSL SI 
Sbjct: 300 QDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIF 359

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
            QL+D R  R+VHGF++R  W   D++IGNA+V+MYAKLG I+ A AVFE LP +DVISW
Sbjct: 360 GQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISW 419

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NTLITGYAQNGLASEAI+ + MMEE   I PNQGT+VSILPAYSHVGAL+QG+KIH R+I
Sbjct: 420 NTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLI 479

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KNCL  DVFVATCL+DMYGKCGR++DAMSLFY++P+ +SVPWNAIIS  GIHG G+KAL 
Sbjct: 480 KNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQ 539

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F+ M  +GV+ DHITFVSLL+ACSHSGLV E Q  F  MQ+E+ IKP+LKHYGCMVDLF
Sbjct: 540 LFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLF 599

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG+L  A+N + NMP++ DASIWG LL ACRIHGN ELG  ASDRL EVDSENVGYYV
Sbjct: 600 GRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYV 659

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYANVGKWEG  +VRSLARDRGL+KTPGWSS+ V + V++FY GN++HP+  +IY+
Sbjct: 660 LLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYE 719

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           ELR L AKMKSLGYVPD SFVLQDVEEDEKE ILTSHSERLAI FGIIS+PPKSPI+IFK
Sbjct: 720 ELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFK 779

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCHN TK+IS+ITEREIIVRDSNRFHHFKDGICSCGDYW
Sbjct: 780 NLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 267/491 (54%), Gaps = 14/491 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  V ++C N+   K++H  +L LG   DV +   L+ +Y   G  +++   F  +  ++
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 94  SGSWNAMISGYCQSGNAVEALDILDE-MRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
             SWN+M+S Y + G   +++D + E + L GV  D  T   +L  C    ++  G  +H
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMH 170

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
            +++K G E +++V+ +LI++Y++FG +  A +VF  M  RDV SWN++I+ + Q+ +  
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A      M+   ++ D +T+ S+  I AQ ND      VH ++++ G    DV + NA+
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHG-LESDVFVSNAL 289

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           ++MY+K G +  A  VF+G+ V+D++SWN++I  Y QN     A+  F+ M     + P+
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG-MRPD 348

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
             T VS+   +  +   R G  +H  V++   L  D+ +   LV+MY K G ID A ++F
Sbjct: 349 LLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVF 408

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGL 449
            Q+P    + WN +I+ +  +G   +A++ +  M++EG  + P+  T+VS+L A SH G 
Sbjct: 409 EQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           + +G + +  +++    +   +    C++D++G+ G L  A +    +P +  +  W A+
Sbjct: 468 LQQGMKIHGRLIKNCLFLDVFVA--TCLIDMYGKCGRLEDAMSLFYEIP-QETSVPWNAI 524

Query: 509 LGACRIHGNME 519
           + +  IHG+ E
Sbjct: 525 ISSLGIHGHGE 535



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++HA ++      DV + T LV +Y   G +  + + F  + R +   WN+++S +   G
Sbjct: 69  QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRG 128

Query: 414 QGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           +   +++   ++L   GVRPD  TF  +L AC     +++G++  H    + G +  +  
Sbjct: 129 RYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLS---LADGEK-MHCWVLKMGFEHDVYV 184

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
              ++ L+ R G + +AH    +MPVR D   W A++     +GN+       DR+
Sbjct: 185 AASLIHLYSRFGAVEVAHKVFVDMPVR-DVGSWNAMISGFCQNGNVAEALRVLDRM 239


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/705 (68%), Positives = 586/705 (83%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y R G    AVDCF +F  TS L+ D YTFPPV++AC NL DG+K+HC VLKLGFE
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFE 171

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV++AAS +H Y RFG  ++A  LFD+M +RD G+WNAMISG+  +G   EAL++ DEM
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEM 231

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R + VSMD +T++S+LP+C + D+I+SG+LIH+Y +K GLEF+LFV N LINMYAKFG +
Sbjct: 232 RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGEL 291

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R A  +F+QM  RD+VSWNS++AA+EQ+  P+ A G +  M   G+ PDLLTLVSL S+ 
Sbjct: 292 RSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVA 351

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A+L +  +SRS+HGF+ RR WF+ D+ +GNA++DMYAKLG I+SA  VFEGLPVKDVISW
Sbjct: 352 AELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISW 411

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N+LITGY+QNGLA+EAI+V+  M   +   PNQGT+VSIL A+S +GAL+QG+K H ++I
Sbjct: 412 NSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLI 471

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L FD+FV+TCLVDMYGKCG++ DA+SLFY+VP  SSV WNAIISCHG+HG G KA+ 
Sbjct: 472 KNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVK 531

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F++M  EGV+PDHITFVSLL+ACSHSGLV EGQ  F +MQE +GI+P LKHYGCMVDLF
Sbjct: 532 LFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLF 591

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAGHL  A NF++NMPVRPD S+WGALLGACRIH N+EL    SD L +V+SENVGYYV
Sbjct: 592 GRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYV 651

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA +G WEGVDEVRSLARDRGLKKTPGWSSIEV+ K+D+FYTGN+THPK E+IY 
Sbjct: 652 LLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYS 711

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           ELRNLTAKMKS+GYVPD +FVLQDVE+DEKE+ILTSHSERLA+AFGIIS+PPK+ +QIFK
Sbjct: 712 ELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFK 771

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCHN TKFIS+ITEREIIVRDSNRFHHFKDG+CSCGDYW
Sbjct: 772 NLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 255/506 (50%), Gaps = 13/506 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  +   C  +   K++H  ++  G    +F++A L++ Y   G    AR  FD +  +D
Sbjct: 46  FNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKD 105

Query: 94  SGSWNAMISGYCQSGNAVEALDILDE-MRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
             +WN+MIS Y + G+   A+D  +E +    +  D  T   ++  C   D+   G  +H
Sbjct: 106 VYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVH 162

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             ++K G E +++++ + I+ Y++FG +  A  +FD MM RD+ +WN++I+ +  +    
Sbjct: 163 CLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVA 222

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  M+   +  D +T+ SL  I  QL+D  +   +H + ++ G    D+ + NA+
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLG-LEFDLFVCNAL 281

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           ++MYAK G + SA  +F  + V+D++SWN+L+  + QN     A+ V+  M     + P+
Sbjct: 282 INMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV-PD 340

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLF 391
             T VS+    + +G       IH  V + C    D+ +   ++DMY K G ID A  +F
Sbjct: 341 LLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVF 400

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLV 450
             +P    + WN++I+ +  +G  ++A++ +  M    G  P+  T+VS+LTA S  G +
Sbjct: 401 EGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGAL 460

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +G +    + + F +   +    C+VD++G+ G L  A +    +P +   S W A++ 
Sbjct: 461 KQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIIS 518

Query: 511 ACRIHGNMELGAVASDRLFEVDSENV 536
              +HG    G  A     E+ SE V
Sbjct: 519 CHGLHG---YGLKAVKLFKEMQSEGV 541



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 196/403 (48%), Gaps = 9/403 (2%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H  +V  G   ++F+S  LIN YA  G + HA   FDQ+  +DV +WNS+I+AY +   
Sbjct: 62  LHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGH 121

Query: 211 PITAHGFFTT-MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
              A   F   +  + +Q D  T   +      L+D    R VH  +++ G F  DV I 
Sbjct: 122 FHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLG-FECDVYIA 177

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            + +  Y++ G ++ AC +F+ + ++D+ +WN +I+G+  NG  +EA+EVF  M     +
Sbjct: 178 ASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEM-RFKSV 236

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           + +  T  S+LP    +  +  G+ IH   IK  L FD+FV   L++MY K G +  A +
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F Q+     V WN++++    + +   AL  + +M   GV PD +T VSL +  +  G 
Sbjct: 297 IFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN 356

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
               +     +         +     ++D++ + G +  A    + +PV+ D   W +L+
Sbjct: 357 FLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLI 415

Query: 510 GACRIHG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
                +G  N  +   +S R +     N G +V +   ++ +G
Sbjct: 416 TGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLG 458


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/706 (65%), Positives = 571/706 (80%), Gaps = 5/706 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y R G  SE + CF  F L+SGL+PD+ TFP VLKACRN+ DG KIHC  LK GF 
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFM 182

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           WDV+VAASL+H+YCR+G    AR LFD+MP RD GSWNAMISGYCQSGNA EAL + D +
Sbjct: 183 WDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGL 242

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R    +MD +TV S+L  C  + +   G+ IH Y +KHGLE  LFVSN LI++YA+FG +
Sbjct: 243 R----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           +   +VFD+M  RD++SWNSII AYE +  P+ A   F  M+ + IQPD LTL+SL SI+
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           +QL + R  RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF  LP KDVISW
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 301 NTLITGYAQNGLASEAIEVFQMMEE-CNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           NT+I+GYAQNG ASEAIE++ +MEE   EI+ NQGT+VS+LPA S  GALRQG+K+H R+
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +KN L  DVFV T L DMYGKCGR+DDA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+
Sbjct: 479 LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAV 538

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F++MLDEGV+PDHITFV+LL+ACSHSGLV EG+  F MMQ ++GI P LKHYGCMVDL
Sbjct: 539 MLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDL 598

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           +GRAG L +A NFI++MP++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+
Sbjct: 599 YGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYH 658

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SN+YA+ GKWEGVDE+RS+   +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y
Sbjct: 659 VLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMY 718

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
            EL  L  K+K +GYVPD  FVLQDVE+DEKEHIL SHSERLA+AF +I++P K+ I+IF
Sbjct: 719 RELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIF 778

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 779 KNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 259/513 (50%), Gaps = 17/513 (3%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           + + C NL   K +H  ++      +V ++A L+++YC  G   +AR  FD +  RD  +
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYA 119

Query: 97  WNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN MISGY ++G + E +       L  G+  D  T  S+L  C    N+  G  IH   
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACR---NVTDGNKIHCLA 176

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +K G  ++++V+ +LI++Y ++G + +A  +FD+M  RD+ SWN++I+ Y QS +   A 
Sbjct: 177 LKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEA- 235

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
               T+       D +T+VSL S   +  D     ++H + ++ G    ++ + N ++D+
Sbjct: 236 ---LTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG-LESELFVSNKLIDL 291

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YA+ G +     VF+ + V+D+ISWN++I  Y  N     AI +FQ M   + I P+  T
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEM-RLSRIQPDCLT 350

Query: 336 YVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
            +S+    S +G +R    +    + K     D+ +   +V MY K G +D A ++F  +
Sbjct: 351 LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGLVSE 452
           P    + WN IIS +  +G   +A+  +  M +EG  +  +  T+VS+L ACS +G + +
Sbjct: 411 PNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQ 470

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G +  H    + G+   +     + D++G+ G L  A +    +P R ++  W  L+   
Sbjct: 471 GMK-LHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACH 528

Query: 513 RIHGNMELGAVASDRLFE--VDSENVGYYVLMS 543
             HG+ E   +    + +  V  +++ +  L+S
Sbjct: 529 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 561


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/705 (64%), Positives = 566/705 (80%), Gaps = 4/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y R G  SE + CF  F L+SGL PD+ TFP VLKACR ++DG KIHC  LK GF 
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFM 182

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           WDV+VAASL+H+Y R+     AR LFD+MPVRD GSWNAMISGYCQSGNA EAL + + +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R    +MD +TV S+L  C  + +   G+ IH Y +KHGLE  LFVSN LI++YA+FG +
Sbjct: 243 R----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R   +VFD+M  RD++SWNSII AYE +  P+ A   F  M+ + IQPD LTL+SL SI+
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           +QL D R  RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF  LP  DVISW
Sbjct: 359 SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 418

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NT+I+GYAQNG ASEAIE++ +MEE  EI  NQGT+VS+LPA S  GALRQG+K+H R++
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 478

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+ 
Sbjct: 479 KNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVM 538

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F++MLDEGV+PDHITFV+LL+ACSHSGLV EGQ  F MMQ ++GI P LKHYGCMVD++
Sbjct: 539 LFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMY 598

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG L  A  FI++M ++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+V
Sbjct: 599 GRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHV 658

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SN+YA+ GKWEGVDE+RS+A  +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y 
Sbjct: 659 LLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYR 718

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           EL  L AK+K +GYVPD  FVLQDVE+DEKEHIL SHSERLAIAF +I++P K+ I+IFK
Sbjct: 719 ELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 778

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/512 (27%), Positives = 262/512 (51%), Gaps = 16/512 (3%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           + + C NL   K +H  ++      +V ++A L+++YC  G   +AR  FD +  RD  +
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYA 119

Query: 97  WNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN MISGY ++GN+ E +       L  G++ D  T  S+L  C     ++ G  IH   
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLA 176

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +K G  ++++V+ +LI++Y+++  + +A  +FD+M  RD+ SWN++I+ Y QS +   A 
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA- 235

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
               T+       D +T+VSL S   +  D     ++H + ++ G    ++ + N ++D+
Sbjct: 236 ---LTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG-LESELFVSNKLIDL 291

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YA+ G +     VF+ + V+D+ISWN++I  Y  N     AI +FQ M   + I P+  T
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM-RLSRIQPDCLT 350

Query: 336 YVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
            +S+    S +G +R    +    + K     D+ +   +V MY K G +D A ++F  +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG 453
           P +  + WN IIS +  +G   +A+  +  M +EG +  +  T+VS+L ACS +G + +G
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            +  H    + G+   +     + D++G+ G L  A +    +P R ++  W  L+    
Sbjct: 471 MK-LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHG 528

Query: 514 IHGNMELGAVASDRLFE--VDSENVGYYVLMS 543
            HG+ E   +    + +  V  +++ +  L+S
Sbjct: 529 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/663 (61%), Positives = 512/663 (77%), Gaps = 19/663 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y R G  SE + CF  F L+SGL PD+ TFP VLKACR ++DG KIHC  LK GF 
Sbjct: 56  MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFM 115

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           WDV+VAASL+H+Y R+     AR LFD+MPVRD GSWNAMISGYCQSGNA EAL + + +
Sbjct: 116 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 175

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R    +MD +TV S+L  C  + +   G+ IH Y +KHGLE  L               +
Sbjct: 176 R----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL---------------L 216

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R   +VFD+M  RD++SWNSII AYE +  P+ A   F  M+ + IQPD LTL+SL SI+
Sbjct: 217 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 276

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           +QL D R  RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF  LP  DVISW
Sbjct: 277 SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 336

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NT+I+GYAQNG ASEAIE++ +MEE  EI  NQGT+VS+LPA S  GALRQG+K+H R++
Sbjct: 337 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 396

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+ 
Sbjct: 397 KNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVM 456

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F++MLDEGV+PDHITFV+LL+ACSHSGLV EGQ  F MMQ ++GI P LKHYGCMVD++
Sbjct: 457 LFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMY 516

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG L  A  FI++M ++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+V
Sbjct: 517 GRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHV 576

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SN+YA+ GKWEGVDE+RS+A  +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y 
Sbjct: 577 LLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYR 636

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           EL  L AK+K +GYVPD  FVLQDVE+DEKEHIL SHSERLAIAF +I++P K+ I+IFK
Sbjct: 637 ELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 696

Query: 661 NLR 663
           NLR
Sbjct: 697 NLR 699



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 227/463 (49%), Gaps = 31/463 (6%)

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDN 144
           FD +  RD  +WN MISGY ++GN+ E +       L  G++ D  T  S+L  C     
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---T 98

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           ++ G  IH   +K G  ++++V+ +LI++Y+++  + +A  +FD+M  RD+ SWN++I+ 
Sbjct: 99  VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y QS +   A     T+       D +T+VSL S   +  D     ++H + ++ G   E
Sbjct: 159 YCQSGNAKEA----LTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE 214

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
                           ++     VF+ + V+D+ISWN++I  Y  N     AI +FQ M 
Sbjct: 215 ----------------LLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM- 257

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGR 383
             + I P+  T +S+    S +G +R    +    + K     D+ +   +V MY K G 
Sbjct: 258 RLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL 317

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLT 442
           +D A ++F  +P +  + WN IIS +  +G   +A+  +  M +EG +  +  T+VS+L 
Sbjct: 318 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 377

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACS +G + +G +  H    + G+   +     + D++G+ G L  A +    +P R ++
Sbjct: 378 ACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNS 435

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMS 543
             W  L+     HG+ E   +    + +  V  +++ +  L+S
Sbjct: 436 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 478



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%)

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS-NDP 211
           L +  H  +  L  +   ++ +      +  +  FD +  RDV +WN +I+ Y ++ N  
Sbjct: 8   LMMFTHFSDIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSS 67

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR---NSRSVHGFIMRRGWFMEDVII 268
                F   M  +G+ PD  T  S+      L  CR   +   +H   ++ G FM DV +
Sbjct: 68  EVIRCFSLFMLSSGLTPDYRTFPSV------LKACRTVIDGNKIHCLALKFG-FMWDVYV 120

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
             +++ +Y++   + +A  +F+ +PV+D+ SWN +I+GY Q+G A EA+ +   +   + 
Sbjct: 121 AASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDS 180

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +     T VS+L A +  G   +G+ IH+  IK+ L  ++               + D  
Sbjct: 181 V-----TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQ 220

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F ++     + WN+II  + ++ Q  +A++ F++M    ++PD +T +SL +  S  G
Sbjct: 221 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 280



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +I     V  +  L    S    F+ +  +DV +WN +I+GY + G +SE I  F +   
Sbjct: 19  LICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 78

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            + + P+  T+ S+L A   V     G KIH   +K    +DV+VA  L+ +Y +   + 
Sbjct: 79  SSGLTPDYRTFPSVLKACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 135

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTAC 444
           +A  LF ++P      WNA+IS +   G   +AL      L  G+R  D +T VSLL+AC
Sbjct: 136 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSAC 190

Query: 445 SHSGLVSEG 453
           + +G  + G
Sbjct: 191 TEAGDFNRG 199


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/679 (58%), Positives = 515/679 (75%), Gaps = 3/679 (0%)

Query: 30  DFYTFPPVLKACRNLVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDD 88
           D +TFPP+L+A +      ++H   L+LG    D F + +L+H Y RFG    A + FD+
Sbjct: 70  DAFTFPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDE 129

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           M  RD  +WNAM+SG C++  A EA+ +   M +EGV+ D +TV+S+LP+C    +    
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALA 189

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           L +HLY VKHGL+  LFV N +I++Y K GM+    +VFD M  RD+V+WNSII+ +EQ 
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
               +A   F  M+ +G+ PD+LTL+SL S +AQ  D    RSVH +++RRGW + D+I 
Sbjct: 250 GQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIA 309

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           GNA+VDMYAKL  I +A  +F+ +PV+D +SWNTLITGY QNGLASEAI V+  M++   
Sbjct: 310 GNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEG 369

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P QGT+VS+LPAYSH+GAL+QG ++HA  IK  L  DV+V TC++D+Y KCG++D+AM
Sbjct: 370 LKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM 429

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF Q PR S+ PWNA+IS  G+HG G KAL+ F QM  EG+ PDH+TFVSLL ACSH+G
Sbjct: 430 LLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAG 489

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV +G+ +F+MMQ  +GIKP  KHY CMVD+FGRAG L  A +FI+NMP++PD++IWGAL
Sbjct: 490 LVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGAL 549

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LGACRIHGN+E+G VAS  LFE+D +NVGYYVLMSN+YA VGKW+GVDEVRSL R + L+
Sbjct: 550 LGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQ 609

Query: 569 KTPGWSSIEVNNKVDIFYTGNR--THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           KTPGWSSIEV   V++FY+GN+   HP++E+I  EL +L AK++SLGYVPD SFVLQDVE
Sbjct: 610 KTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVE 669

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           EDEKE IL +HSERLAIAFGII++PP++P+ I+KNLRVCGDCHN TK+IS+ITEREIIVR
Sbjct: 670 EDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVR 729

Query: 687 DSNRFHHFKDGICSCGDYW 705
           DSNRFHHFKDG CSCGD+W
Sbjct: 730 DSNRFHHFKDGYCSCGDFW 748



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I+ Y++ G  SEA+  +       GL+P   TF  VL A  +   L  G ++H   +K 
Sbjct: 344 LITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT 403

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V   ++ +Y + G  + A  LF+  P R +G WNA+ISG    G+  +AL + 
Sbjct: 404 GLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLF 463

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M+ EG+S D +T  S+L  C+ +  +  G    ++    +G++        +++M+ +
Sbjct: 464 SQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGR 523

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A      M ++ D   W +++ A
Sbjct: 524 AGQLDDAFDFIRNMPIKPDSAIWGALLGA 552


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/698 (56%), Positives = 521/698 (74%), Gaps = 9/698 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF-EWDVFVAASL 69
           L   + C Y F      RPD +TFP +++A  +     ++H   L+LG     VF + SL
Sbjct: 56  LRHILSCAYPF------RPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSL 109

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           +H Y RFG  + A K+FD+M  RD  +WNAM+SG C++  A EA+ +   M  EGV+ D 
Sbjct: 110 VHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDT 169

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +TV+S+LP+C    + +  L++H+Y VKHGL+  LFV N LI++Y K GM+  A  VF  
Sbjct: 170 VTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHG 229

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M  RD+V+WNSII+  EQ      A   F  M+ +G+ PD+LTLVSL S +AQ  D R++
Sbjct: 230 MECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSA 289

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           +S+H ++MRRGW ++D+I GNA+VDMYAKL  I +A  +F+ +PV+D +SWNTLITGY Q
Sbjct: 290 KSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQ 349

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGLA+EA+E +  M++   +   QGT+VS+LPAYSH+GAL+QG+++HA  IK  L  DV+
Sbjct: 350 NGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVY 409

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V TCL+D+Y KCG++ +AM LF ++PR S+ PWNAIIS  G+HG G +AL  F +M  EG
Sbjct: 410 VGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEG 469

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PDH+TFVSLL ACSH+GLV +G+ +F +MQ  + I P  KHY CM D+ GRAG L  A
Sbjct: 470 IKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEA 529

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
            NFIQNMP++PD+++WGALLGACRIHGN+E+G VAS  LFE+D ENVGYYVLMSN+YA V
Sbjct: 530 FNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKV 589

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT--HPKYEKIYDELRNLTA 607
           GKW+GVDEVRSL R + L+KTPGWSSIEV   V++FY+GN+T  HP++E+I  ELR+L A
Sbjct: 590 GKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLA 649

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           K++S+GYV D SFVLQDVE+DEKEHIL +HSERLAIAFGII++P ++P+ I+KNLRVCGD
Sbjct: 650 KIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGD 709

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CHN TK+ISQITEREIIVRDSNRFHHFKDG CSCGD+W
Sbjct: 710 CHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I+ Y++ G  +EAV+ +       GL+    TF  VL A  +   L  G ++H   +K+
Sbjct: 343 LITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKI 402

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V   L+ +Y + G    A  LF+ MP R +G WNA+ISG    G+  EAL + 
Sbjct: 403 GLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLF 462

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG 148
             M+ EG+  D +T  S+L  C+ +  +  G
Sbjct: 463 SRMQQEGIKPDHVTFVSLLAACSHAGLVDQG 493


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/660 (61%), Positives = 504/660 (76%), Gaps = 37/660 (5%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            K +H  ++  G    +F++  L+++Y   G  +++R  FD +P +D  +WN+MIS Y  
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 107 SGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +G+  EA+    ++ L   +  D  T   +L  C     ++ G  IH +  K G ++N+F
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVF 151

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V+ +LI+MY++FG    A  +FD M  RD+ SWN++I+   Q+ +   A      M+  G
Sbjct: 152 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 211

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I+ + +T+VS+  +                                 VDMYAKLG+++SA
Sbjct: 212 IKMNFVTVVSILPVF--------------------------------VDMYAKLGLLDSA 239

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VFE +PVKDVISWNTLITGYAQNGLASEAIEV++MMEEC EI PNQGT+VSILPAY+H
Sbjct: 240 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 299

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           VGAL+QG+KIH RVIK  L  DVFVATCL+D+YGKCGR+ DAMSLFYQVP+ SSV WNAI
Sbjct: 300 VGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 359

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ISCHGIHG  +K L  F +MLDEGV+PDH+TFVSLL+ACSHSG V EG+  F +MQE +G
Sbjct: 360 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YG 418

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           IKP LKHYGCMVDL GRAG+L MA++FI++MP++PDASIWGALLGACRIHGN+ELG  AS
Sbjct: 419 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 478

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           DRLFEVDS+NVGYYVL+SNIYANVGKWEGVD+VRSLAR+RGLKKTPGWS+IEVN KVD+F
Sbjct: 479 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 538

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
           YTGN++HPK ++IY+ELR LTAKMKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAF
Sbjct: 539 YTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 598

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           GIIS+PPKSPI+IFKNLRVCGDCHN TKFIS+IT+REI+VRDSNRFHHFKDGICSCGDYW
Sbjct: 599 GIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 240/416 (57%), Gaps = 37/416 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS YV  G   EA+ CFYQ  L S +RPDFYTFPPVLKAC  LVDG+KIHC   KLGF+
Sbjct: 88  MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQ 147

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+VFVAASL+HMY RFG   +AR LFDDMP RD GSWNAMISG  Q+GNA +ALD+LDEM
Sbjct: 148 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 207

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           RLEG+ M+ +TV SILPV                                ++MYAK G++
Sbjct: 208 RLEGIKMNFVTVVSILPV-------------------------------FVDMYAKLGLL 236

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSI 239
             A +VF+ +  +DV+SWN++I  Y Q+     A   +  M++   I P+  T VS+   
Sbjct: 237 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A +   +    +HG +++    + DV +   ++D+Y K G +  A ++F  +P +  ++
Sbjct: 297 YAHVGALQQGMKIHGRVIKTNLHL-DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 355

Query: 300 WNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WN +I+ +  +G A + +++F +M++E   + P+  T+VS+L A SH G + +G      
Sbjct: 356 WNAIISCHGIHGHAEKTLKLFGEMLDE--GVKPDHVTFVSLLSACSHSGFVEEGKWCFRL 413

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           + +  +   +    C+VD+ G+ G ++ A      +P +  +  W A++    IHG
Sbjct: 414 MQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 469


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/682 (56%), Positives = 507/682 (74%), Gaps = 3/682 (0%)

Query: 27  LRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKL 85
           LRPD +TFPP+++A        ++H   L+LG    +VF + SL+H Y RFG    A ++
Sbjct: 65  LRPDSFTFPPLVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRV 124

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+MP RD  +WNAM+SG C++  A +A+ +L  M  EGV+ D +T++S+LP+C    + 
Sbjct: 125 FDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDR 184

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
              L++H+Y VKHGL   LFV N LI++Y K GM+  A  VF  M  RD+V+WNSII+A 
Sbjct: 185 ALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISAN 244

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
           EQ      A   F  M ++G+ PD+LTLVSL S VAQ  D   ++SVH ++ RRGW + D
Sbjct: 245 EQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGD 304

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +I GNA+VDMYAK+  I++A  VF+ LP +DV+SWNTLITGY QNGLA+EAI ++  M  
Sbjct: 305 IIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHN 364

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              + P QGT+VS+LPAYS++G L+QG+++HA  IK  L  DV+V TCL+D+Y KCG++ 
Sbjct: 365 HEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLV 424

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +AM LF  +PR S+ PWNAII+  G+HG G KAL+ F QM  E ++PDH+TFVSLL ACS
Sbjct: 425 EAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACS 484

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GLV +G+ +F +MQ  +GI P  KHY CMVD+ GRAG L  A  FIQ+MP++PD+++W
Sbjct: 485 HAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVW 544

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
           GALLGACRIHGN+E+G VAS  LFE+D ENVGYYVLMSN+YA +GKW+GVD VRSL R +
Sbjct: 545 GALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQ 604

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRT--HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            L+KTPGWSS+EV   V +FY+G +T  HP++E+I   L +L AKMKS GYVPD SFVLQ
Sbjct: 605 NLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQ 664

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DVEEDEKE IL +HSERLAIAFGII++PP +P+ I+KNLRVCGDCH+ TK+IS+ITEREI
Sbjct: 665 DVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREI 724

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           IVRD+NRFHHFKDG CSCGD+W
Sbjct: 725 IVRDANRFHHFKDGHCSCGDFW 746



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           +I+ Y++ G  +EA+  +       GL+P   TF  VL A      L  G ++H   +K 
Sbjct: 342 LITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKT 401

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V   L+ +Y + G    A  LF+ MP R +G WNA+I+G    G+  +AL + 
Sbjct: 402 GLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLF 461

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLY----IVKHGLEFNLFVSN 168
            +M+ E +  D +T  S+L  C+ +  +  G     L+  +Y    I KH          
Sbjct: 462 SQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH--------YT 513

Query: 169 NLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            +++M  + G +  A      M ++ D   W +++ A
Sbjct: 514 CMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGA 550


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/569 (66%), Positives = 466/569 (81%), Gaps = 2/569 (0%)

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
           PV     ++L G  IH  ++K G E+++FV+ +L++MY++FG++  A ++FD M  RD  
Sbjct: 2   PVVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRG 61

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWN++I+ Y Q+ +   A      M+  G++ D +T+ S+  + AQ+ D  + + +H ++
Sbjct: 62  SWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYV 121

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++ G   E + + NA+++MYAK G +  A  VF GL +KDV+SWNTLITGYAQNGLASEA
Sbjct: 122 IKHGLEFE-LFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEA 179

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           IEV+ +MEE  EI PNQGT+VSILPAYSHVGAL+QG++IH +VIKNCL  DVFV TCL+D
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLID 239

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MYGKCG++DDA+SLFYQVPR +SVPWNA+ISC+G+HG G+KAL  FR+M  E V+PDHIT
Sbjct: 240 MYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHIT 299

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           FVSLL+ACSHSGLVS+ Q  F+MM+EE+GIKP LKHYGCMVDLFGRAG L MA NFI+ M
Sbjct: 300 FVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKM 359

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
           P++PDAS WGALL ACRIHGN+ELG  AS+RLFEVDSENVGYYVL+SNIYANVGKWEGVD
Sbjct: 360 PIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVD 419

Query: 557 EVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
           +VRSLARDRGL+K PGWSSI +NNKVD+FYTGN+THPK E+IY ELR+LT+K+K++GYVP
Sbjct: 420 DVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVP 479

Query: 617 DKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
           D  FVLQDVEEDEKEHIL  HSERLAIA+GIIS+ PK+PI+IFKNLRVCGDCH  TKFIS
Sbjct: 480 DFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFIS 539

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDYW 705
            ITEREIIVRDS+RFHHFK G CSCGDYW
Sbjct: 540 IITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/393 (46%), Positives = 253/393 (64%), Gaps = 26/393 (6%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS 94
           PPV+KAC +L+DGKKIHC VLKLGFEWDVFVAASL+HMY RFGL   ARKLFDDMP RD 
Sbjct: 1   PPVVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDR 60

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
           GSWNAMISGYCQ+GNA EALDI DEMRLEGV MD ITVAS+LPVCA+  +ILSG LIHLY
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLY 120

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           ++KHGLEF LFVSN LINMYAKFG + HA +VF  ++ +DVVSWN++I  Y Q+     A
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEA 179

Query: 215 HGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
              +  M++   I P+  T VS+    + +   +    +HG +++   +  DV +G  ++
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLY-SDVFVGTCLI 238

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMY K G ++ A ++F  +P K+ + WN +I+ Y  +G   +A+E+F+ M +   + P+ 
Sbjct: 239 DMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREM-KAERVKPDH 297

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT-----------CLVDMYGKCG 382
            T+VS+L A SH G +               CF++               C+VD++G+ G
Sbjct: 298 ITFVSLLSACSHSGLVSDAQ----------WCFNMMEEEYGIKPSLKHYGCMVDLFGRAG 347

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            ++ A +   ++P +  +  W A+++   IHG 
Sbjct: 348 ELEMAFNFIKKMPIQPDASAWGALLNACRIHGN 380


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/704 (47%), Positives = 469/704 (66%), Gaps = 6/704 (0%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEW 61
           YV+ G  ++A+  +YQ   T G+ PD   F  V+KAC    +L  G+K+H  ++  GFE 
Sbjct: 95  YVKNGFWNKALRLYYQMQRT-GINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFES 153

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV V  +L  MY + G    AR++FD MP RD  SWNA+I+GY Q+G   EAL +  EM+
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           + G+  +  T+ S++PVCA    +  G  IH Y ++ G+E ++ V N L+NMYAK G + 
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A ++F++M  RDV SWN+II  Y  ++    A  FF  MQ  GI+P+ +T+VS+    A
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L      + +HG+ +R G+   DV+ GNA+V+MYAK G +NSA  +FE +P K+V++WN
Sbjct: 334 HLFALEQGQQIHGYAIRSGFESNDVV-GNALVNMYAKCGNVNSAYKLFERMPKKNVVAWN 392

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I+GY+Q+G   EA+ +F  M+    I P+    VS+LPA +H  AL QG +IH   I+
Sbjct: 393 AIISGYSQHGHPHEALALFIEMQ-AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIR 451

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           +    +V V T LVD+Y KCG ++ A  LF ++P    V W  +I  +GIHG G+ AL  
Sbjct: 452 SGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALAL 511

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F +M + G + DHI F ++LTACSH+GLV +G +YF  M+ ++G+ P L+HY C+VDL G
Sbjct: 512 FSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLG 571

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAGHL  A+  I+NM + PDA++WGALLGACRIH N+ELG  A+  LFE+D +N GYYVL
Sbjct: 572 RAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVL 631

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA   +WE V ++R + +++G+KK PG S + V+  V  F  G+RTHP+ E+IY  
Sbjct: 632 LSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAM 691

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  +M+  GYVP+ +  LQDVEE+ KE+IL+SHSE+LAI+FGII++ P  PI+I KN
Sbjct: 692 LEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKN 751

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVC DCHN TKFIS+I  REIIVRD+NRFHH K+G CSCGDYW
Sbjct: 752 LRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 244/435 (56%), Gaps = 5/435 (1%)

Query: 86  FDDMPVRDSGS-WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           F    +R++   W   I GY ++G   +AL +  +M+  G++ D +   S++  C    +
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           + +G  +H  I+  G E ++ V   L +MY K G + +A +VFD+M +RDVVSWN+IIA 
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y Q+  P  A   F+ MQ  GI+P+  TLVS+  + A L      + +H + +R G    
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG-IES 254

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV++ N +V+MYAK G +N+A  +FE +P++DV SWN +I GY+ N    EA+  F  M 
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM- 313

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   I PN  T VS+LPA +H+ AL QG +IH   I++    +  V   LV+MY KCG +
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + A  LF ++P+ + V WNAIIS +  HG   +AL  F +M  +G++PD    VS+L AC
Sbjct: 374 NSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +H   + +G++  H      G + ++     +VD++ + G++  A    + MP   D   
Sbjct: 434 AHFLALEQGKQ-IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVS 491

Query: 505 WGALLGACRIHGNME 519
           W  ++ A  IHG+ E
Sbjct: 492 WTTMILAYGIHGHGE 506


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 314/708 (44%), Positives = 444/708 (62%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y R   L +AV  F +     G+RP  Y F  +LK C +  D   GK+IHC ++  
Sbjct: 146 MLKGYARNSSLDDAVSFFCRMRY-DGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN 204

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +VF    +++MY +  L   A K+FD MP RD   WN +ISGY Q+G    AL+++
Sbjct: 205 GFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELV 264

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+ EG   D IT+ SILP  A   ++  G  IH Y ++ G E  + VS  L++MY+K 
Sbjct: 265 LRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKC 324

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD+M  + VVSWNS+I  Y Q+ DP  A   F  M    ++   +T++   
Sbjct: 325 GSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGAL 384

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    R VH  ++ +     DV + N+++ MY+K   ++ A  +FE L  K +
Sbjct: 385 HACADLGDVEQGRFVHK-LLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTL 443

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I GYAQNG  +EAI+ F  M+  N I P+  T VS++PA + +  L Q   IH 
Sbjct: 444 VSWNAMILGYAQNGRINEAIDYFCKMQLQN-IKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VI+ CL  +VFVAT LVDMY KCG +  A  LF  +       WNA+I  +G HG G  
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKA 562

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M  E ++P+ +TF+ +L+ACSHSGLV EG +YF  M++++G++P + HYG MV
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMV 622

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRA  L  A +FIQ MP+ P  S++GA+LGACRIH N+ELG  A++R+F++D ++ G
Sbjct: 623 DLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGG 682

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL++NIYA    W+ V  VR+    +G++KTPGWS +E+ N+V  FY+G  +HP+ +K
Sbjct: 683 YHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKK 742

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++K+ GY+PD + V  DVE+  KE +L SHSE+LAIAF ++++ P + I 
Sbjct: 743 IYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIH 801

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCHN TK+IS +T+REIIVRD  RFHHFKDG CSCGDYW
Sbjct: 802 LRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 279/539 (51%), Gaps = 16/539 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+ C ++ +  +    ++K G   +      L+ ++C+FG  + A ++F  +  +    
Sbjct: 83  LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           ++ M+ GY ++ +  +A+     MR +GV         +L VC  + ++  G  IH  ++
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            +G   N+F    ++NMYAK  ++  A ++FD+M ERD+V WN+II+ Y Q+    TA  
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
               MQ+ G +PD +T+VS+   VA +   R  RS+HG+ MR G F   V +  A+VDMY
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAG-FESFVNVSTALVDMY 321

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGT 335
           +K G + +A  +F+ +  K V+SWN++I GY QNG    A+E+FQ MM+E  ++     T
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDE--QVEMTNVT 379

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            +  L A + +G + QG  +H  + +  L  DV V   L+ MY KC R+D A  +F  + 
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ 439

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
             + V WNA+I  +  +G+ ++A+++F +M  + ++PD  T VS++ A +   ++ +  +
Sbjct: 440 HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA-K 498

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
           + H +     +  ++     +VD++ + G +  A      M  R   + W A++     H
Sbjct: 499 WIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGTH 557

Query: 516 GNMELGAVASDRLFE------VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           G   LG  A + LFE      +    V +  ++S    +    EG     S+ +D GL+
Sbjct: 558 G---LGKAALE-LFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLE 612


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 307/709 (43%), Positives = 461/709 (65%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y   G+  EA+  F +    S L P+ YTF   L+AC +   +  G  IH +VLK 
Sbjct: 289 MISAYSSNGQSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  +VFVA +L+ MY RFG    A  +F +M   D+ SWN+M+SG+ Q+G   EAL   
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EMR  G   D + V SI+   ARS N L+G+ IH Y +K+GL+ +L V N+L++MYAKF
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 467

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M++   +FD+M ++DVVSW +IIA + Q+     A   F  +Q  GI  D++ + S+ 
Sbjct: 468 CSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL 527

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L    + + +H +I+R+G  + D+++ N +VD+Y + G ++ A  +FE +  KDV
Sbjct: 528 LACSGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDV 585

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I+ Y  NGLA+EA+E+F +M+E   + P+  + VSIL A + + AL++G +IH 
Sbjct: 586 VSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKGKEIHG 644

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  +A+ LVDMY +CG ++ + ++F  +     V W ++I+ +G+HG G  
Sbjct: 645 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 704

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ FR+M DE + PDHI FV++L ACSHSGL++EG+R+   M+ E+ ++P  +HY C+V
Sbjct: 705 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLV 764

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRA HL  A+ F++ M V P A +W ALLGAC+IH N ELG +A+ +L E+D EN G
Sbjct: 765 DLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPG 824

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA   +W+ V+EVR   +  GLKK PG S IEV NKV  F   +++HP+  +
Sbjct: 825 NYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYE 884

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L  +T K+ K  GYV    FVL + +E+EK  +L  HSERLAIA+G++++P  + +
Sbjct: 885 IYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASL 944

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCHN+ K IS+  ERE+++RD+NRFHHFK G+CSCGD W
Sbjct: 945 RITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 301/545 (55%), Gaps = 21/545 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  YV  G    +++  Y+    SG+  D  TFP +LKAC  L D   G ++H   +K 
Sbjct: 187 MIGAYVTNGEPLGSLE-LYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKE 245

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G+   VFVA S++ MY +    N AR+LFD MP + D  SWN+MIS Y  +G ++EAL +
Sbjct: 246 GYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRL 305

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM+   ++ +  T  + L  C  S  I  G+ IH  ++K     N+FV+N LI MYA+
Sbjct: 306 FGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYAR 365

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           FG M  A  +F  M + D +SWNS+++ + Q+     A  F+  M+ AG +PDL+ ++S+
Sbjct: 366 FGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISI 425

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A+  +  N   +H + M+ G    D+ +GN++VDMYAK   +     +F+ +P KD
Sbjct: 426 IAASARSGNTLNGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 484

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW T+I G+AQNG  S A+E+F+ + +   I+ +     SIL A S +  +    +IH
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREV-QLEGIDLDVMMISSILLACSGLKLISSVKEIH 543

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + +I+  L  D+ +   +VD+YG+CG +D A  +F  +     V W ++ISC+  +G  +
Sbjct: 544 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 602

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC 475
           +AL  F  M + GV PD I+ VS+L+A +    + +G+  +  ++++ F ++  L     
Sbjct: 603 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--ST 660

Query: 476 MVDLFGRAGHLGMAH---NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           +VD++ R G L  +    NFI+N     D  +W +++ A  +HG    G  A D    ++
Sbjct: 661 LVDMYARCGTLEKSRNVFNFIRN----KDLVLWTSMINAYGMHG---CGRAAIDLFRRME 713

Query: 533 SENVG 537
            E++ 
Sbjct: 714 DESIA 718



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 257/491 (52%), Gaps = 11/491 (2%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFDD 88
            +  VL+ C   + L +G+++H  ++     ++ VF++  L+ MY + G    A KLFD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP +   +WNAMI  Y  +G  + +L++  EMR+ G+ +D  T   IL  C    +   G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAAYEQ 207
             +H   +K G    +FV+N+++ MY K   +  A ++FD+M E+ DVVSWNS+I+AY  
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +   I A   F  MQ+A + P+  T V+        +  +    +H  +++  +++ +V 
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVF 354

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + NA++ MYA+ G +  A  +F  +   D ISWN++++G+ QNGL  EA++ +  M +  
Sbjct: 355 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 414

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           +  P+    +SI+ A +  G    G++IHA  +KN L  D+ V   LVDMY K   +   
Sbjct: 415 Q-KPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 473

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F ++P    V W  II+ H  +G   +AL  FR++  EG+  D +   S+L ACS  
Sbjct: 474 DCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 533

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            L+S  +   H      G+   +   G +VD++G  G++  A    + +  + D   W +
Sbjct: 534 KLISSVKE-IHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFK-DVVSWTS 590

Query: 508 LLGACRIHGNM 518
           ++ +C +H  +
Sbjct: 591 MI-SCYVHNGL 600


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/708 (42%), Positives = 449/708 (63%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+   R GR  +A + F Q     G++PD   F  +L+AC +   L  GKK+H  + ++
Sbjct: 283 MITGLARHGRFKQACNLF-QRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV 341

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ +++V  ++L MY + G    A ++FD +  R+  SW AMI+G+ Q G   EA    
Sbjct: 342 GWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M   G+  + +T  SIL  C+    +  G  I  +I++ G   +  V   L++MYAK 
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A RVF+++ +++VV+WN++I AY Q      A   F  + + GI+P+  T  S+ 
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           ++    +     + VH  IM+ G    D+ + NA+V M+   G + SA  +F  +P +D+
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAG-LESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDL 580

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I G+ Q+G    A + F+MM+E   I P++ T+  +L A +   AL +G ++HA
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + +     DV V T L+ MY KCG I+DA  +F+++P+ +   W ++I+ +  HG+G +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM  EGV+PD ITFV  L+AC+H+GL+ EG  +F  M+E F I+P ++HYGCMV
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMV 758

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAG L  A  FI  M V PD+ +WGALLGAC++H N+EL   A+ +  E+D  + G
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +V++SNIYA  G W+ V ++R +  DRG+ K PG S IEV+ KV  FY+ ++THP+ E+
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE 878

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I+ EL  L  +M+ LGYVPD  +VL DVE++EKE  L  HSERLAI +G++ +PP +PI 
Sbjct: 879 IHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIV 938

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TKFIS+IT+R+II RDSNRFHHFKDG+CSCGD+W
Sbjct: 939 ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 274/518 (52%), Gaps = 8/518 (1%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
           + G+ +EA+    +   +S ++    T+  +L+ C   +NL DG++I+  + K G + D+
Sbjct: 87  KAGQFNEAMQVLERVD-SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI 145

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+  +L++MY + G    A+++FDDM  +D  SWN ++ GY Q G   EA  + ++M  +
Sbjct: 146 FMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQD 205

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  D  T  S+L  CA + N+  G  ++  I+K G + +LFV   LINM+ K G +  A
Sbjct: 206 SVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDA 265

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            +VFD +  RD+V+W S+I    +      A   F  M++ G+QPD +  VSL       
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + VH  +   GW  E + +G A++ MY K G +  A  VF+ +  ++V+SW  +
Sbjct: 326 EALEQGKKVHARMKEVGWDTE-IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G+AQ+G   EA   F  M E   I PN+ T++SIL A S   AL++G +I   +I+  
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESG-IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D  V T L+ MY KCG + DA  +F ++ + + V WNA+I+ +  H Q D AL  F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            +L EG++P+  TF S+L  C  S  +  G ++ H +  + G++  L     +V +F   
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           G L  A N   +MP R D   W  ++     HG  ++ 
Sbjct: 563 GDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVA 599



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 240/422 (56%), Gaps = 6/422 (1%)

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           ++D+   NA+++   ++G   EA+ +L+ +    + +   T +++L +C +  N+  G  
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           I+ +I K G++ ++F+ N LINMYAK G    A ++FD M E+DV SWN ++  Y Q   
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A      M Q  ++PD  T VS+ +  A   +    R ++  I++ GW   D+ +G 
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT-DLFVGT 250

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+++M+ K G I  A  VF+ LP +D+++W ++ITG A++G   +A  +FQ MEE   + 
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQ 309

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P++  +VS+L A +H  AL QG K+HAR+ +     +++V T ++ MY KCG ++DA+ +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  V   + V W A+I+    HG+ D+A  FF +M++ G+ P+ +TF+S+L ACS    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 451 SEGQRYF-HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             GQ+   H+++  +G    ++    ++ ++ + G L  AH   + +  + +   W A++
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMI 486

Query: 510 GA 511
            A
Sbjct: 487 TA 488


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/708 (42%), Positives = 449/708 (63%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+   R GR  +A + F Q     G++PD   F  +L+AC +   L  GKK+H  + ++
Sbjct: 283 MITGLARHGRFKQACNLF-QRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV 341

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ +++V  ++L MY + G    A ++FD +  R+  SW AMI+G+ Q G   EA    
Sbjct: 342 GWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M   G+  + +T  SIL  C+    +  G  I  +I++ G   +  V   L++MYAK 
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A RVF+++ +++VV+WN++I AY Q      A   F  + + GI+P+  T  S+ 
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           ++    +     + VH  IM+ G    D+ + NA+V M+   G + SA  +F  +P +D+
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAG-LESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDL 580

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I G+ Q+G    A + F+MM+E   I P++ T+  +L A +   AL +G ++HA
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + +     DV V T L+ MY KCG I+DA  +F+++P+ +   W ++I+ +  HG+G +
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM  EGV+PD ITFV  L+AC+H+GL+ EG  +F  M+E F I+P ++HYGCMV
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMV 758

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAG L  A  FI  M V PD+ +WGALLGAC++H N+EL   A+ +  E+D  + G
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNG 818

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +V++SNIYA  G W+ V ++R +  DRG+ K PG S IEV+ KV  FY+ ++THP+ E+
Sbjct: 819 VFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEE 878

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I+ EL  L  +M+ LGYVPD  +VL DVE++EKE  L  HSERLAI +G++ +PP +PI 
Sbjct: 879 IHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIV 938

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TKFIS+IT+R+II RDSNRFHHFKDG+CSCGD+W
Sbjct: 939 ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 274/518 (52%), Gaps = 8/518 (1%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
           + G+ +EA+    +   +S ++    T+  +L+ C   +NL DG++I+  + K G + D+
Sbjct: 87  KAGQFNEAMQVLERVD-SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI 145

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+  +L++MY + G    A+++FDDM  +D  SWN ++ GY Q G   EA  + ++M  +
Sbjct: 146 FMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQD 205

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  D  T  S+L  CA + N+  G  ++  I+K G + +LFV   LINM+ K G +  A
Sbjct: 206 SVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDA 265

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            +VFD +  RD+V+W S+I    +      A   F  M++ G+QPD +  VSL       
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + VH  +   GW  E + +G A++ MY K G +  A  VF+ +  ++V+SW  +
Sbjct: 326 EALEQGKKVHARMKEVGWDTE-IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G+AQ+G   EA   F  M E   I PN+ T++SIL A S   AL++G +I   +I+  
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESG-IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D  V T L+ MY KCG + DA  +F ++ + + V WNA+I+ +  H Q D AL  F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            +L EG++P+  TF S+L  C  S  +  G ++ H +  + G++  L     +V +F   
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           G L  A N   +MP R D   W  ++     HG  ++ 
Sbjct: 563 GDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVA 599



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 240/422 (56%), Gaps = 6/422 (1%)

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           ++D+   NA+++   ++G   EA+ +L+ +    + +   T +++L +C +  N+  G  
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           I+ +I K G++ ++F+ N LINMYAK G    A ++FD M E+DV SWN ++  Y Q   
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A      M Q  ++PD  T VS+ +  A   +    R ++  I++ GW   D+ +G 
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT-DLFVGT 250

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+++M+ K G I  A  VF+ LP +D+++W ++ITG A++G   +A  +FQ MEE   + 
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQ 309

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P++  +VS+L A +H  AL QG K+HAR+ +     +++V T ++ MY KCG ++DA+ +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  V   + V W A+I+    HG+ D+A  FF +M++ G+ P+ +TF+S+L ACS    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 451 SEGQRYF-HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             GQ+   H+++  +G    ++    ++ ++ + G L  AH   + +  + +   W A++
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMI 486

Query: 510 GA 511
            A
Sbjct: 487 TA 488


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/709 (43%), Positives = 459/709 (64%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y   G+  EA+  F +    S L P+ YTF   L+AC +   +  G  IH +VLK 
Sbjct: 253 MISAYSSNGQSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  +VFVA +L+ MY RFG    A  +F +M   D+ SWN+M+SG+ Q+G   EAL   
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EMR  G   D + V SI+   ARS N L G+ IH Y +K+GL+ +L V N+L++MYAKF
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKF 431

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M++   +FD+M ++DVVSW +IIA + Q+     A   F  +Q  GI  D++ + S+ 
Sbjct: 432 CSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL 491

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L    + + +H +I+R+G  + D+++ N +VD+Y + G ++ A  +FE +  KDV
Sbjct: 492 LACSGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDV 549

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I+ Y  NGLA+EA+E+F +M+E   + P+  + VSIL A + + AL++G +IH 
Sbjct: 550 VSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKGKEIHG 608

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  +A+ LVDMY +CG ++ + ++F  +     V W ++I+ +G+HG G  
Sbjct: 609 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 668

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ FR+M DE + PDHI FV++L ACSHSGL++EG+R+   M+ E+ ++P  +HY C+V
Sbjct: 669 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLV 728

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRA HL  A+ F++ M V P A +W ALLGAC+IH N ELG +A+ +L E+D EN G
Sbjct: 729 DLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPG 788

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+Y+   +W+ V+ VR   +  GLKK PG S IEV NKV  F   +++HP+  +
Sbjct: 789 NYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYE 848

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L  +T K+ K  GYV    FVL + +E+EK  +L  HSERLAIA+G++++P  + +
Sbjct: 849 IYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASL 908

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCHN+ K IS+  ERE+++RD+NRFHHFK G+CSCGD W
Sbjct: 909 RITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  281 bits (719), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 301/545 (55%), Gaps = 21/545 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  YV  G    +++  Y+    SG+  D  TFP +LKAC  L D   G ++H   +K 
Sbjct: 151 MIGAYVTNGEPLGSLE-LYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKE 209

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G+   VFVA S++ MY +    N AR+LFD MP + D  SWN+MIS Y  +G ++EAL +
Sbjct: 210 GYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRL 269

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM+   ++ +  T  + L  C  S  I  G+ IH  ++K     N+FV+N LI MYA+
Sbjct: 270 FGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYAR 329

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           FG M  A  +F  M + D +SWNS+++ + Q+     A  F+  M+ AG +PDL+ ++S+
Sbjct: 330 FGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISI 389

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A+  +  +   +H + M+ G    D+ +GN++VDMYAK   +     +F+ +P KD
Sbjct: 390 IAASARSGNTLHGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 448

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW T+I G+AQNG  S A+E+F+ + +   I+ +     SIL A S +  +    +IH
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREV-QLEGIDLDVMMISSILLACSGLKLISSVKEIH 507

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + +I+  L  D+ +   +VD+YG+CG +D A  +F  +     V W ++ISC+  +G  +
Sbjct: 508 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 566

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC 475
           +AL  F  M + GV PD I+ VS+L+A +    + +G+  +  ++++ F ++  L     
Sbjct: 567 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--ST 624

Query: 476 MVDLFGRAGHLGMAH---NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           +VD++ R G L  +    NFI+N     D  +W +++ A  +HG    G  A D    ++
Sbjct: 625 LVDMYARCGTLEKSRNVFNFIRN----KDLVLWTSMINAYGMHG---CGRAAIDLFRRME 677

Query: 533 SENVG 537
            E++ 
Sbjct: 678 DESIA 682



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 257/491 (52%), Gaps = 11/491 (2%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFDD 88
            +  VL+ C   + L +G+++H  ++     ++ VF++  L+ MY + G    A KLFD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP +   +WNAMI  Y  +G  + +L++  EMR+ G+ +D  T   IL  C    +   G
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAAYEQ 207
             +H   +K G    +FV+N+++ MY K   +  A ++FD+M E+ DVVSWNS+I+AY  
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +   I A   F  MQ+A + P+  T V+        +  +    +H  +++  +++ +V 
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-NVF 318

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + NA++ MYA+ G +  A  +F  +   D ISWN++++G+ QNGL  EA++ +  M +  
Sbjct: 319 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 378

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           +  P+    +SI+ A +  G    G++IHA  +KN L  D+ V   LVDMY K   +   
Sbjct: 379 Q-KPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 437

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F ++P    V W  II+ H  +G   +AL  FR++  EG+  D +   S+L ACS  
Sbjct: 438 DCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 497

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            L+S  +   H      G+   +   G +VD++G  G++  A    + +  + D   W +
Sbjct: 498 KLISSVKE-IHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFK-DVVSWTS 554

Query: 508 LLGACRIHGNM 518
           ++ +C +H  +
Sbjct: 555 MI-SCYVHNGL 564


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/708 (42%), Positives = 434/708 (61%), Gaps = 5/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVDGKKIHCSVLKLG 58
            M++ Y   G   E ++ F +  L +            L A    +L  GK+IH   L+  
Sbjct: 300  MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             + D+ VA  L+ MY + G    A++LF  +  RD  +W+A+I+   Q+G   EAL +  
Sbjct: 360  IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 119  EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            EM+ + +  + +T+ SILP CA    +  G  IH + VK  ++ +L     L++MYAK G
Sbjct: 420  EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479

Query: 179  MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
                AL  F++M  RD+V+WNS+I  Y Q  DP  A   F  ++ + I PD  T+V +  
Sbjct: 480  FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 239  IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDV 297
              A LND      +HG I++ G F  D  + NA++DMYAK G + SA  +F      KD 
Sbjct: 540  ACALLNDLDQGTCIHGLIVKLG-FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDE 598

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ++WN +I  Y QNG A EAI  F  M   N  +PN  T+VS+LPA +++ A R+G+  HA
Sbjct: 599  VTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAAAYLAAFREGMAFHA 657

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +I+     +  V   L+DMY KCG++D +  LF ++    +V WNA++S + +HG GD+
Sbjct: 658  CIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDR 717

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A+  F  M +  V+ D ++FVS+L+AC H+GLV EG++ FH M +++ IKP L+HY CMV
Sbjct: 718  AIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMV 777

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GRAG       FI+ MPV PDA +WGALLG+CR+H N++LG VA D L +++  N  
Sbjct: 778  DLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPA 837

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            ++V++S+IYA  G+W    + RS   D GLKKTPG S +E+ NKV  F  G+++HP+ E 
Sbjct: 838  HFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLES 897

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            ++     L  KM+ +GYVPD+S VLQ+VEE++KE  L SHSERLAI F ++++PP S IQ
Sbjct: 898  MHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQ 957

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I KNLRVC DCH  TKFIS+IT R IIVRD+ RFHHF+DGICSC DYW
Sbjct: 958  IVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 269/522 (51%), Gaps = 9/522 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  Y R  + +EA++ +Y   +  GL PD YTF  VLKAC    NL +G   H  + + 
Sbjct: 100 MIRAYTRSKQYNEALEMYYCM-VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRR 158

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVF+ A L+ MY + G    AR++FD MP RD  +WNAMI+G  QS +  EA+D  
Sbjct: 159 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFF 218

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+L GV    +++ ++ P   +  NI     IH Y+ +   +F+  VSN LI++Y+K 
Sbjct: 219 RSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC 276

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFDQM+++D VSW +++A Y  +   +     F  M+   ++ + ++ VS  
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAF 336

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A+  D    + +HG  +++     D+++   ++ MYAK G    A  +F GL  +D+
Sbjct: 337 LAAAETIDLEKGKEIHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W+ +I    Q G   EA+ +FQ M+   ++ PN+ T +SILPA + +  L+ G  IH 
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQN-QKMKPNRVTLMSILPACADLSLLKLGKSIHC 454

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K  +  D+   T LV MY KCG    A++ F ++     V WN++I+ +   G    
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYN 514

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F ++    + PD  T V ++ AC+    + +G    H +  + G +        ++
Sbjct: 515 AIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CIHGLIVKLGFESDCHVKNALI 573

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           D++ + G L  A           D   W  ++ A   +G+ +
Sbjct: 574 DMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 286/543 (52%), Gaps = 19/543 (3%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +L+S    ++  +P +L +C++L    +IH  ++  GF+    +   L+++Y  F   ++
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDL 81

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +FD  P      WN+MI  Y +S    EAL++   M  +G+  D  T   +L  C  
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           + N+  G+  H  I + GLE ++F+   L++MY+K G ++ A  VFD+M +RDVV+WN++
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA   QS DP  A  FF +MQ  G++P  ++L++L   + +L++    RS+HG++ RR +
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
                 + N ++D+Y+K G ++ A  VF+ +  +D +SW T++ GYA NG   E +E+F 
Sbjct: 262 ---SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 318

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+  N +  N+ + VS   A +    L +G +IH   ++  +  D+ VAT L+ MY KC
Sbjct: 319 KMKLGN-VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G  + A  LF+ +     V W+AII+     G  ++AL+ F++M ++ ++P+ +T +S+L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            AC+   L+  G+   H    +  +   L     +V ++ + G    A      M  R D
Sbjct: 438 PACADLSLLKLGKS-IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-D 495

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
              W +L     I+G  ++G    D    +D   + Y + +S I  + G   GV    +L
Sbjct: 496 IVTWNSL-----INGYAQIG----DPYNAID---MFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 562 ARD 564
             D
Sbjct: 544 LND 546


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/708 (42%), Positives = 446/708 (62%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+   R  +  +A + F Q     G++PD   F  +LKAC +   L  GK++H  + ++
Sbjct: 277 MITGLARHRQFKQACNLF-QVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEV 335

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +++V  +LL MY + G    A ++F+ +  R+  SW AMI+G+ Q G   EA    
Sbjct: 336 GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFF 395

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M   G+  + +T  SIL  C+R   +  G  IH  I+K G   +  V   L++MYAK 
Sbjct: 396 NKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKC 455

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF+++ +++VV+WN++I AY Q      A   F  + + GI+PD  T  S+ 
Sbjct: 456 GSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           ++    +     + V   I+R G F  D+ I NA+V M+   G + SA  +F  +P +D+
Sbjct: 516 NVCKSPDALELGKWVQSLIIRAG-FESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDL 574

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I G+ Q+G    A + F+MM+E   + P+Q T+  +L A +   AL +G ++HA
Sbjct: 575 VSWNTIIAGFVQHGENQFAFDYFKMMQESG-VKPDQITFTGLLNACASPEALTEGRRLHA 633

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + +  L  DV V T L+ MY KCG IDDA  +F+ +P+ +   W ++I+ +  HG+G +
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKE 693

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM  EGV+PD ITFV  L+AC+H+GL+ EG  +F  M++ F I+P ++HYGCMV
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMV 752

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAG L  A  FI  M V+PD+ +WGALLGAC++H ++EL    + +  E+D  + G
Sbjct: 753 DLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDG 812

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV++SNIYA  G W+ V ++R +  DRG+ K PG S IEV+ +V IF + ++THP+ E+
Sbjct: 813 VYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEE 872

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I+ EL  L  +MK LGYVPD  +VL DVE+ EKEH L  HSERLAIA+G++ +PP +PI 
Sbjct: 873 IHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIV 932

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TK IS+IT+R+II RDSNRFHHFKDG+CSCGD+W
Sbjct: 933 ISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 265/518 (51%), Gaps = 8/518 (1%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
           + G+LSEA+        +  ++    T+  +L+ C   +NL DG++IH  +     + D+
Sbjct: 81  KAGQLSEAMLVLLSVD-SPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDI 139

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+   L+ MY + G  N A+++FD+MP +D  SWN ++ GY Q     EA  + ++M  +
Sbjct: 140 FMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQD 199

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           GV  D  T   +L  CA + N+  G  +   I+  G + +LFV   LINM+ K G +  A
Sbjct: 200 GVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           L+VF+ +  RD+++W S+I    +      A   F  M++ G+QPD +  VSL       
Sbjct: 260 LKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + VH  +   G   E + +G A++ MY K G +  A  VF  +  ++V+SW  +
Sbjct: 320 EALEQGKRVHARMKEVGLDTE-IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAM 378

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G+AQ+G   EA   F  M E   I PN+ T++SIL A S   AL+QG +IH R+IK  
Sbjct: 379 IAGFAQHGRMEEAFLFFNKMIESG-IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAG 437

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D  V T L+ MY KCG + DA ++F ++ + + V WNA+I+ +  H + D A+  F+
Sbjct: 438 YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            +L EG++PD  TF S+L  C     +  G ++   +    G +  L     +V +F   
Sbjct: 498 ALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNC 556

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           G L  A N   +MP R D   W  ++     HG  +  
Sbjct: 557 GDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFA 593



 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 156/519 (30%), Positives = 274/519 (52%), Gaps = 8/519 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++  YV+  R  EA     Q  +  G++PD YTF  +L AC   +N+  G ++   +L  
Sbjct: 176 LLGGYVQHRRYEEAFRLHEQM-VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ D+FV  +L++M+ + G  + A K+F+++P RD  +W +MI+G  +     +A ++ 
Sbjct: 235 GWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EGV  D +   S+L  C   + +  G  +H  + + GL+  ++V   L++MY K 
Sbjct: 295 QVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKC 354

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  AL VF+ +  R+VVSW ++IA + Q      A  FF  M ++GI+P+ +T +S+ 
Sbjct: 355 GSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSIL 414

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              ++ +  +  R +H  I++ G+  +D  +  A++ MYAK G +  A  VFE +  ++V
Sbjct: 415 GACSRPSALKQGRQIHDRIIKAGYITDDR-VRTALLSMYAKCGSLMDARNVFERISKQNV 473

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN +IT Y Q+     A+  FQ + +   I P+  T+ SIL       AL  G  + +
Sbjct: 474 VAWNAMITAYVQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCKSPDALELGKWVQS 532

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     D+ +   LV M+  CG +  AM+LF  +P    V WN II+    HG+   
Sbjct: 533 LIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQF 592

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A ++F+ M + GV+PD ITF  LL AC+    ++EG+R  H +  E  +   +     ++
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTGLI 651

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++ + G +  AH    N+P + +   W +++     HG
Sbjct: 652 SMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHG 689



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 231/421 (54%), Gaps = 4/421 (0%)

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           ++++   NA ++   ++G   EA+ +L  +    + +   T +S+L +C +  N+  G  
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH +I    ++ ++F+ N LI+MYAK G    A ++FD+M ++DV SWN ++  Y Q   
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A      M Q G++PD  T V + +  A   +      +   I+  GW   D+ +G 
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGW-DTDLFVGT 244

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+++M+ K G ++ A  VF  LP +D+I+W ++ITG A++    +A  +FQ+MEE   + 
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEE-EGVQ 303

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P++  +VS+L A +H  AL QG ++HAR+ +  L  +++V T L+ MY KCG ++DA+ +
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEV 363

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  V   + V W A+I+    HG+ ++A  FF +M++ G+ P+ +TF+S+L ACS    +
Sbjct: 364 FNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSAL 423

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +G R  H    + G     +    ++ ++ + G L  A N  + +  + +   W A++ 
Sbjct: 424 KQG-RQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMIT 481

Query: 511 A 511
           A
Sbjct: 482 A 482


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/708 (42%), Positives = 432/708 (61%), Gaps = 5/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVDGKKIHCSVLKLG 58
            M++ Y   G   E ++ F +  L +            L A    +L  GK+IH   L+  
Sbjct: 300  MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             + D+ VA  L+ MY + G    A++LF  +  RD  +W+A+I+   Q+G   EAL +  
Sbjct: 360  IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 119  EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            EM+ + +  + +T+ SILP CA    +  G  IH + VK  ++ +L     L++MYAK G
Sbjct: 420  EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479

Query: 179  MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
                AL  F++M  RD+V+WNS+I  Y Q  DP  A   F  ++ + I PD  T+V +  
Sbjct: 480  FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 239  IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDV 297
              A LND      +HG I++ G F  D  + NA++DMYAK G + SA  +F      KD 
Sbjct: 540  ACALLNDLDQGTCIHGLIVKLG-FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDE 598

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ++WN +I  Y QNG A EAI  F  M   N  +PN  T+VS+LPA +++ A R+G+  HA
Sbjct: 599  VTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAAAYLAAFREGMAFHA 657

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +I+     +  V   L+DMY KCG++  +  LF ++    +V WNA++S + +HG GD+
Sbjct: 658  CIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDR 717

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A+  F  M +  V+ D ++FVS+L+AC H GLV EG++ FH M +++ IKP L+HY CMV
Sbjct: 718  AIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMV 777

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GRAG       FI+ MPV PDA +WGALLG+CR+H N++LG VA D L +++  N  
Sbjct: 778  DLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPA 837

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            ++V++S+IYA  G+W    + RS   D GLKKTPG S +E+ NKV  F  G+++HP+ E 
Sbjct: 838  HFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLES 897

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            ++     L  KM+ +GYVPD+S VLQ+VEE++KE  L SHSERLAI F ++++PP S IQ
Sbjct: 898  MHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQ 957

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I KNLRVC DCH  TKFIS+IT R IIVRD+ RFHHF+DGICSC DYW
Sbjct: 958  IVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 269/522 (51%), Gaps = 9/522 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  Y R  + +EA++ +Y   +  GL PD YTF  VLKAC    NL +G   H  + + 
Sbjct: 100 MIRAYTRSKQYNEALEMYYCM-VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRR 158

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVF+ A L+ MY + G    AR++FD MP RD  +WNAMI+G  QS +  EA+D  
Sbjct: 159 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFF 218

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+L GV    +++ ++ P   +  NI     IH Y+ +   +F+  VSN LI++Y+K 
Sbjct: 219 RSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC 276

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFDQM+++D VSW +++A Y  +   +     F  M+   ++ + ++ VS  
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAF 336

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A+  D    + +HG  +++     D+++   ++ MYAK G    A  +F GL  +D+
Sbjct: 337 LAAAETIDLEKGKEIHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W+ +I    Q G   EA+ +FQ M+   ++ PN+ T +SILPA + +  L+ G  IH 
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQN-QKMKPNRVTLMSILPACADLSLLKLGKSIHC 454

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K  +  D+   T LV MY KCG    A++ F ++     V WN++I+ +   G    
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYN 514

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F ++    + PD  T V ++ AC+    + +G    H +  + G +        ++
Sbjct: 515 AIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CIHGLIVKLGFESDCHVKNALI 573

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           D++ + G L  A           D   W  ++ A   +G+ +
Sbjct: 574 DMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615



 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 286/543 (52%), Gaps = 19/543 (3%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +L+S    ++  +P +L +C++L    +IH  ++  GF+    +   L+++Y  F   ++
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDL 81

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +FD  P      WN+MI  Y +S    EAL++   M  +G+  D  T   +L  C  
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           + N+  G+  H  I + GLE ++F+   L++MY+K G ++ A  VFD+M +RDVV+WN++
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA   QS DP  A  FF +MQ  G++P  ++L++L   + +L++    RS+HG++ RR +
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
                 + N ++D+Y+K G ++ A  VF+ +  +D +SW T++ GYA NG   E +E+F 
Sbjct: 262 ---SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 318

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+  N +  N+ + VS   A +    L +G +IH   ++  +  D+ VAT L+ MY KC
Sbjct: 319 KMKLGN-VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G  + A  LF+ +     V W+AII+     G  ++AL+ F++M ++ ++P+ +T +S+L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            AC+   L+  G+   H    +  +   L     +V ++ + G    A      M  R D
Sbjct: 438 PACADLSLLKLGKS-IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-D 495

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
              W +L     I+G  ++G    D    +D   + Y + +S I  + G   GV    +L
Sbjct: 496 IVTWNSL-----INGYAQIG----DPYNAID---MFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 562 ARD 564
             D
Sbjct: 544 LND 546


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/682 (42%), Positives = 434/682 (63%), Gaps = 6/682 (0%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           ++P  Y F  +LK C +  D   GK+IH  ++   F  +VF    +++MY +    + A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           K+FD MP RD  SWN +I+G+ Q+G A +AL+++  M+ EG   D IT+ ++LP  A   
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            ++ G  IH Y ++ G    + +S  L +MY+K G +  A  +FD M ++ VVSWNS++ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y Q+ +P  A   F  M + GI P  +T++      A L D    + VH F+ +     
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN-LG 381

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ + N+++ MY+K   ++ A  +F  L  +  +SWN +I GYAQNG  SEA+  F  M
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    + P+  T VS++PA + +   R    IH  +I++CL  ++FV T LVDMY KCG 
Sbjct: 442 KSLG-MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I  A  LF  +     + WNA+I  +G HG G  AL+ F +M    V P+ IT++S+++A
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSHSGLV EG R+F  M++++G++P + HYG MVDL GRAG +  A +FI+NMP+ P  +
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           ++GA+LGAC+IH N+E+G  A+ +LFE++ +  GY+VL++NIYA+  KW  V EVR    
Sbjct: 621 VYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTME 680

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            +GLKKTPG S +E+ N+V  FY+G+ THP+ ++IY  L  L  ++K+ GYVPD + +L 
Sbjct: 681 KKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL- 739

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DVE+D +E +L SHSE+LAIAFG++++ P + I + KNLRVCGDCHN TK+IS +T REI
Sbjct: 740 DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREI 799

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           IVRD  RFHHFK+GICSCGDYW
Sbjct: 800 IVRDMQRFHHFKNGICSCGDYW 821



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 283/561 (50%), Gaps = 16/561 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPP--VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           F+  +  + +    Y  P   +L+ C ++ +  +I   V+K G   +      L+ ++ +
Sbjct: 34  FHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK 93

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           +G  N A ++F+ +  +    ++ M+ GY ++ +   AL  L  MR + V         +
Sbjct: 94  YGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYL 153

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L VC  + ++  G  IH  ++ +    N+F    ++NMYAK   +  A ++FD+M ERD+
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSWN+IIA + Q+     A      MQ  G +PD +TLV++    A +      +S+HG+
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
            +R G F + V I  A+ DMY+K G + +A  +F+G+  K V+SWN+++ GY QNG   +
Sbjct: 274 AIRAG-FAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEK 332

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           AI VF+ M E   I+P   T +  L A + +G L +G  +H  V +  L  D+ V   L+
Sbjct: 333 AIAVFEKMLE-EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
            MY KC R+D A  +F  +   + V WNA+I  +  +G+  +ALN F +M   G++PD  
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T VS++ A +    V+   ++ H +     +  ++     +VD++ + G + MA      
Sbjct: 452 TMVSVIPALAELS-VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFE------VDSENVGYYVLMSNIYANV 549
           +  R     W A++     HG   LG  A D LF+      V+  ++ Y  ++S    + 
Sbjct: 511 ISDR-HVITWNAMIDGYGTHG---LGRAALD-LFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 550 GKWEGVDEVRSLARDRGLKKT 570
              EG+   +S+ +D GL+ +
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPS 586



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 7/195 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y + GR+SEA++CF +   + G++PD +T   V+ A   L      K IH  +++ 
Sbjct: 421 MILGYAQNGRVSEALNCFSEMK-SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + ++FV  +L+ MY + G  ++ARKLFD +  R   +WNAMI GY   G    ALD+ 
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
           D+M+   V  + IT  S++  C+ S  +  GL  H   +K  +GLE ++     ++++  
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDHYGAMVDLLG 598

Query: 176 KFGMMRHALRVFDQM 190
           + G ++ A    + M
Sbjct: 599 RAGRIKEAWDFIENM 613


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/708 (43%), Positives = 439/708 (62%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M+  Y +   L  A+  F +    S +RP  Y F  +LK C    +L  GK+IH SV+  
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDS-VRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF W++F    +++MY +    N A  +FD MP RD   WN MISGY Q+G A  AL ++
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG   D IT+ SILP  A +  +  G+ +H Y+++ G E  + VS  L++MY+K 
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD M  R VVSWNS+I  Y QS D   A   F  M   G+QP  +T++   
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    + VH  + +      DV + N+++ MY+K   ++ A  +F+ L  K +
Sbjct: 240 HACADLGDLERGKFVHKLVDQLK-LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 298

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I GYAQNG  +EA+  F  M+  N I P+  T VS++PA + +   RQ   IH 
Sbjct: 299 VSWNAMILGYAQNGCVNEALNAFCEMQSRN-IKPDSFTMVSVIPALAELSIPRQAKWIHG 357

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VI+  L  +VFV T LVDMY KCG I  A  LF  +     + WNA+I  +G HG G  
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKT 417

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           ++  F++M    ++P+ ITF+  L+ACSHSGLV EG  +F  M++++GI+P + HYG MV
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A +FIQ MP++P  +++GA+LGAC+IH N++LG  A+  +F+++ ++ G
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL++NIYA    W  V +VR++    GL+KTPG S +E+ N+V  FY+G  +HP+ +K
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++++ GYVPD + +  DVE+D K  +L +HSE+LAIAFG++++   +PI 
Sbjct: 598 IYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIH 656

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCHN TK+IS +T REIIVRD +RFH FKDG+CSCGDYW
Sbjct: 657 IRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/702 (41%), Positives = 441/702 (62%), Gaps = 7/702 (0%)

Query: 9   GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
            ++ + ++CF  F   +  G RPD YT P V++ACR+L +   G+ IH  V K G + D 
Sbjct: 6   AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH 65

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           FV A+L+ MY +      AR LFD M  RD  +W  MI GY + G A E+L + ++MR E
Sbjct: 66  FVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREE 125

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           GV  D + + +++  CA+   +    +I  YI +   + ++ +   +I+MYAK G +  A
Sbjct: 126 GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 185

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             +FD+M E++V+SW+++IAAY        A   F  M  +G+ PD +TL SL    + L
Sbjct: 186 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDL 245

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            + +  R +H  + + G  + D  +  A+VDMY K   I  A  +F+ +P +D+++W  +
Sbjct: 246 KNLQMGRLIHHIVYKFGLDL-DHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVM 304

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GYA+ G A+E++ +F  M E   + P++   V+++ A + +GA+ +   I   + +  
Sbjct: 305 IGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 363

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              DV + T ++DM+ KCG ++ A  +F ++   + + W+A+I+ +G HGQG KAL+ F 
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP 423

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            ML  G+ P+ IT VSLL ACSH+GLV EG R+F +M E++ ++  +KHY C+VDL GRA
Sbjct: 424 MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRA 483

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A   I++M V  D  +WGA LGACR H ++ L   A+  L E+  +N G+Y+L+S
Sbjct: 484 GRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLS 543

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYAN G+WE V + R L   R LKK PGW+ IEV+NK   F  G+ THP+ ++IY+ L+
Sbjct: 544 NIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 603

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
           +L  K++ +GYVPD +FVL DV+E+ K  IL SHSE+LAIAFG+I++P  +PI+I KNLR
Sbjct: 604 SLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLR 663

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           VCGDCH + K +S IT R IIVRD+NRFHHFK+G CSCGDYW
Sbjct: 664 VCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 217/419 (51%), Gaps = 6/419 (1%)

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           M+ G+ + G+ +       E+   G   D  T+  ++  C    N+  G LIH  + K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           L+ + FV   L++MY K   +  A  +FD+M ERD+V+W  +I  Y +      +   F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            M++ G+ PD + +V++    A+L     +R +  +I R+  F  DVI+G A++DMYAK 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK-FQLDVILGTAMIDMYAKC 179

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G + SA  +F+ +  K+VISW+ +I  Y  +G   +A+++F+MM     + P++ T  S+
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKITLASL 238

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S +  L+ G  IH  V K  L  D FV   LVDMYGKC  I+DA  LF ++P    
Sbjct: 239 LYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDL 298

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W  +I  +   G  +++L  F +M +EGV PD +  V+++ AC+  G + + +     
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 358

Query: 460 MQ-EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +Q ++F +   L     M+D+  + G +  A      M  +   S W A++ A   HG 
Sbjct: 359 IQRKKFQLDVILG--TAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQ 414


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/682 (42%), Positives = 432/682 (63%), Gaps = 6/682 (0%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           ++P  Y F  +LK C +  D   GK+IH  ++   F  +VF    +++MY +    + A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           K+FD MP RD  SWN +I+G+ Q+G A +AL+++  M+ EG   D IT+ ++LP  A   
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            ++ G  IH Y ++ G    + +S  L +MY+K G +  A  +FD M ++ VVSWNS++ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y Q+ +P  A   F  M + GI P  +T++      A L D    + VH F+ +     
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN-LG 381

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ + N+++ MY+K   ++ A  +F  L  +  +SWN +I GYAQNG  SEA+  F  M
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    + P+  T VS++PA + +   R    IH  +I++CL  ++FV T LVDMY KCG 
Sbjct: 442 KSLG-MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I  A  LF  +     + WNA+I  +G HG G  AL+ F +M    V P+ IT++S+++A
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSHSGLV EG R+F  M++++G++P + HYG MVDL GRAG +  A +FI+NMP+ P  +
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           ++GA  GAC+IH N+E+G  A+ +LFE++ +  GY+VL++NIYA+  KW  V EVR    
Sbjct: 621 VYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTME 680

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            +GLKKTPG S +E+ N+V  FY+G+ THP+ ++IY  L  L  ++K+ GYVPD + +L 
Sbjct: 681 KKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL- 739

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DVE+D +E +L SHSE+LAIAFG++++ P + I + KNLRVCGDCHN TK+IS +T REI
Sbjct: 740 DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREI 799

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           IVRD  RFHHFK+GICSCGDYW
Sbjct: 800 IVRDMQRFHHFKNGICSCGDYW 821



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 283/561 (50%), Gaps = 16/561 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPP--VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           F+  +  + +    Y  P   +L+ C ++ +  +I   V+K G   +      L+ ++ +
Sbjct: 34  FHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK 93

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           +G  N A ++F+ +  +    ++ M+ GY ++ +   AL  L  MR + V         +
Sbjct: 94  YGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYL 153

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L VC  + ++  G  IH  ++ +    N+F    ++NMYAK   +  A ++FD+M ERD+
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSWN+IIA + Q+     A      MQ  G +PD +TLV++    A +      +S+HG+
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
            +R G F + V I  A+ DMY+K G + +A  +F+G+  K V+SWN+++ GY QNG   +
Sbjct: 274 AIRAG-FAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEK 332

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           AI VF+ M E   I+P   T +  L A + +G L +G  +H  V +  L  D+ V   L+
Sbjct: 333 AIAVFEKMLE-EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
            MY KC R+D A  +F  +   + V WNA+I  +  +G+  +ALN F +M   G++PD  
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T VS++ A +    V+   ++ H +     +  ++     +VD++ + G + MA      
Sbjct: 452 TMVSVIPALAELS-VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFE------VDSENVGYYVLMSNIYANV 549
           +  R     W A++     HG   LG  A D LF+      V+  ++ Y  ++S    + 
Sbjct: 511 ISDR-HVITWNAMIDGYGTHG---LGRAALD-LFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 550 GKWEGVDEVRSLARDRGLKKT 570
              EG+   +S+ +D GL+ +
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPS 586



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 7/195 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y + GR+SEA++CF +   + G++PD +T   V+ A   L      K IH  +++ 
Sbjct: 421 MILGYAQNGRVSEALNCFSEMK-SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + ++FV  +L+ MY + G  ++ARKLFD +  R   +WNAMI GY   G    ALD+ 
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
           D+M+   V  + IT  S++  C+ S  +  GL  H   +K  +GLE ++     ++++  
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDHYGAMVDLLG 598

Query: 176 KFGMMRHALRVFDQM 190
           + G ++ A    + M
Sbjct: 599 RAGRIKEAWDFIENM 613


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/708 (41%), Positives = 439/708 (62%), Gaps = 7/708 (0%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           +SV  + GRL EA+       L  G R     F  +L+ C   R+L  G+++H ++LK G
Sbjct: 19  VSVLCKTGRLKEALGIMNTMIL-QGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG 77

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            + + ++  +LL MY + G    AR++FD +  R+  SW AMI  +      +EA    +
Sbjct: 78  IQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYE 137

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            M+L G   D +T  S+L      + +  G  +H+ IV+ GLE    V  +L+ MYAK G
Sbjct: 138 TMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCG 197

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  +FD++ E++VV+W  +IA Y Q      A     TMQQA + P+ +T  S+  
Sbjct: 198 DISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQ 257

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                    + + VH +I++ G+  E  ++ N+++ MY K G +  A  +F  LP +DV+
Sbjct: 258 GCTTPAALEHGKKVHRYIIQSGYGRELWVV-NSLITMYCKCGGLEEARKLFSDLPHRDVV 316

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           +W  ++TGYAQ G   EAI +F+ M++   I P++ T+ S+L + S    L++G +IH +
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQ-QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQ 375

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS-CHGIHGQGDK 417
           ++      DV++ + LV MY KCG +DDA  +F Q+   + V W AII+ C   HG+  +
Sbjct: 376 LVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCRE 435

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL +F QM  +G++PD +TF S+L+AC+H GLV EG+++F  M  ++GIKP ++HY C V
Sbjct: 436 ALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFV 495

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAGHL  A N I +MP  P  S+WGALL ACR+H ++E G  A++ + ++D ++ G
Sbjct: 496 DLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDG 555

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV +S+IYA  G++E  ++VR +   R + K PG S IEV+ KV +F+  +++HP+ E+
Sbjct: 556 AYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQ 615

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL  LT ++K +GYVPD  FVL DV+E++KE IL SHSERLAI +G++ +PP  PI+
Sbjct: 616 IYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIR 675

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TKFIS++  REII RD+ RFHHF DG+CSCGD+W
Sbjct: 676 IVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/709 (42%), Positives = 439/709 (61%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK---ACRNLVDGKKIHCSVLKL 57
           MIS Y   G   E+++ F Q  L  G++P+ YTF  +LK   A   + +G+++H  + KL
Sbjct: 222 MISEYSGSGNYGESINLFKQM-LELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKL 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  SL+  Y        A+KLFD++  RD  SWN+MISGY ++G     ++I 
Sbjct: 281 GFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIF 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAK 176
            +M + GV +D  T+ ++   CA    +L G ++H Y +K   L+  +  +N L++MY+K
Sbjct: 341 IKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSK 400

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A+RVF++M E+ VVSW S+I  Y +      A   F  M+  G+ PD+  + S+
Sbjct: 401 CGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSI 460

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A   + ++ + VH +I R      +  + NA+ DMYAK G +  A  VF  +  KD
Sbjct: 461 LNACAINGNLKSGKIVHDYI-RENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISWNT+I GY +N L +EA+ +F  M+   E  P+  T   ILPA + + AL +G +IH
Sbjct: 520 VISWNTMIGGYTKNSLPNEALTLFAEMQR--ESKPDGTTVACILPACASLAALDKGREIH 577

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
              ++N    D +V   +VDMY KCG +  A SLF  +P    V W  +I+ +G+HG G 
Sbjct: 578 GYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGS 637

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+N F QM   G+ PD ++F+S+L ACSHSGL+ EG + F++M++E  I+P+L+HY CM
Sbjct: 638 EAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACM 697

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  R G+L  AH FI+ MP++PDA+IWGALL  CRIH +++L    ++R+FE++ EN 
Sbjct: 698 VDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENT 757

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL++NIYA   KWE V ++R     RGLKK PG S IE+  K++IF  G+ + P+ +
Sbjct: 758 GYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAK 817

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           KI   L+ L +KMK  GY P  ++ L + +E EKE  L  HSE+LA+AFG+++ PP   I
Sbjct: 818 KIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTI 877

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVCGDCH   KF+S+   REII+RDS+RFHHFKDG CSC  YW
Sbjct: 878 RVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 239/490 (48%), Gaps = 7/490 (1%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D   +  +L+ C   +++ DG+++   +   G   D  +   L+ MY + G     R +F
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D +       WN MIS Y  SGN  E++++  +M   G+  +  T +SIL   A    + 
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVE 268

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H  I K G      V N+LI+ Y     +R A ++FD++ +RDV+SWNS+I+ Y 
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           ++         F  M   G+  DL T+V++    A +      + +H + ++      +V
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREV 388

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
              N ++DMY+K G +NSA  VFE +  K V+SW ++ITGY + GL+  AI++F  M+  
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKS- 447

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P+     SIL A +  G L+ G  +H  + +N L  + FV+  L DMY KCG + D
Sbjct: 448 RGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKD 507

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  + +   + WN +I  +  +   ++AL  F +M  E  +PD  T   +L AC+ 
Sbjct: 508 AHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACAS 566

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              + +G R  H      G          +VD++ + G L +A +    +P + D   W 
Sbjct: 567 LAALDKG-REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNK-DLVSWT 624

Query: 507 ALLGACRIHG 516
            ++    +HG
Sbjct: 625 VMIAGYGMHG 634



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 326 CNEINPN--QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           C+  N N   G Y SIL   +   ++R G ++ + +  + +  D  +   LV MY KCG 
Sbjct: 141 CSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGD 200

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           + +   +F ++  S    WN +IS +   G   +++N F+QML+ G++P+  TF S+L  
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKC 260

Query: 444 CSHSGLVSEGQR 455
            +    V EG++
Sbjct: 261 FAAVARVEEGRQ 272


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/707 (40%), Positives = 434/707 (61%), Gaps = 6/707 (0%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           +S+  + GRL EA+       L  G R     F  +L+ C   R+L  G+++H ++LK G
Sbjct: 68  VSILCKQGRLKEALGILNTMIL-QGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG 126

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            + + ++  +LL MY + G    AR++FD +  R+  SW AMI  +      +EA    +
Sbjct: 127 IQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYE 186

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            M+L G   D +T  S+L      + +  G  +H+ I K GLE    V  +L+ MYAK G
Sbjct: 187 TMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG 246

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  +FD++ E++VV+W  +IA Y Q      A      MQQA + P+ +T  S+  
Sbjct: 247 DISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQ 306

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                    + + VH +I++ G+  E + + NA++ MY K G +  A  +F  LP +DV+
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGRE-IWVVNALITMYCKCGGLKEARKLFGDLPHRDVV 365

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           +W  ++TGYAQ G   EAI++F+ M++   I P++ T+ S L + S    L++G  IH +
Sbjct: 366 TWTAMVTGYAQLGFHDEAIDLFRRMQQ-QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQ 424

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           ++      DV++ + LV MY KCG +DDA  +F Q+   + V W A+I+    HG+  +A
Sbjct: 425 LVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREA 484

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L +F QM  +G++PD +TF S+L+AC+H GLV EG+++F  M  ++GIKP ++HY C VD
Sbjct: 485 LEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 544

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAGHL  A N I  MP +P  S+WGALL ACRIH ++E G  A++ + ++D ++ G 
Sbjct: 545 LLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGA 604

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YV +SNIYA  G++E  ++VR +   R + K PG S IEV+ KV +F+  +++HP+ ++I
Sbjct: 605 YVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEI 664

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y EL  LT ++K  GYVPD  FVL DV+E++K   L SHSERLAI +G++ +PP +PI+I
Sbjct: 665 YAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRI 724

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLRVCGDCH  +KFIS++  REII RD++RFHHF DG+CSCGD+W
Sbjct: 725 VKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 254/504 (50%), Gaps = 42/504 (8%)

Query: 1   MISVYVRCGRLSEAVDCF------------------------------YQFTLTSGLRPD 30
           ++S+Y +CG L++A   F                              Y+    +G +PD
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196

Query: 31  FYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
             TF  +L A  N   L  G+K+H  + K G E +  V  SL+ MY + G  + A+ +FD
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            +P ++  +W  +I+GY Q G    AL++L++M+   V+ + IT  SIL  C     +  
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H YI++ G    ++V N LI MY K G ++ A ++F  +  RDVV+W +++  Y Q
Sbjct: 317 GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQ 376

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                 A   F  MQQ GI+PD +T  S  +  +     +  +S+H  ++  G+ + DV 
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL-DVY 435

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + +A+V MYAK G ++ A  VF  +  ++V++W  +ITG AQ+G   EA+E F+ M++  
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK-Q 494

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRID 385
            I P++ T+ S+L A +HVG + +G K H R +         V   +C VD+ G+ G ++
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRK-HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTA 443
           +A ++   +P +     W A++S   IH   ++       +L   + PD    +V+L   
Sbjct: 554 EAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLK--LDPDDDGAYVALSNI 611

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIK 467
            + +G   + ++   +M++   +K
Sbjct: 612 YAAAGRYEDAEKVRQVMEKRDVVK 635


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/708 (42%), Positives = 434/708 (61%), Gaps = 8/708 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS Y   G  +EA++ +Y+F    G+ PD YT   VL+AC  L    +G  IH  + K+
Sbjct: 187 LISGYNANGYWNEALEIYYRFR-NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKI 245

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DV V   LL MYC+F      R++FD M +RD+ SWN MI GY Q G   E++ + 
Sbjct: 246 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 305

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM +     D +T+ SIL  C    ++  G  +H Y++  G E +   SN LINMYAK 
Sbjct: 306 MEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 364

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  VF  M  +D VSWNS+I  Y Q+     A   F  M +  ++PD +T V L 
Sbjct: 365 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLL 423

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+  QL D    + +H  + + G F  ++++ N +VDMYAK G +  +  VFE +  +D+
Sbjct: 424 SMSTQLGDLHLGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 482

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WNT+I     +   +  + +   M     + P+  T +SILP  S + A RQG +IH 
Sbjct: 483 ITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSLLAAKRQGKEIHG 541

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + K  L  DV V   L++MY KCG + ++  +F  +     V W A+IS  G++G+G K
Sbjct: 542 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKK 601

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M   G+ PDH+ FV+++ ACSHSGLV EG  YFH M++++ I+P ++HY C+V
Sbjct: 602 AVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV 661

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  L  A +FI +MP++PD+SIWGALL ACR+ G+ E+    S+R+ E++ ++ G
Sbjct: 662 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 721

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SNIYA +GKW+ V  +R   + RGLKK PG S +E+ NKV +F TG +   ++E+
Sbjct: 722 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEE 781

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           +   L  L   M   GY+ +  FVL D++EDEK  IL  HSERLAIAFG++++ P +P+Q
Sbjct: 782 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 841

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH  TK+IS+I +RE++VRD+NRFH FKDG CSCGDYW
Sbjct: 842 VMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 281/513 (54%), Gaps = 14/513 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFV 65
           G  SEA+   Y  T    L+PD YTFP V+ AC  L+D    K IH  VL +GF  D+++
Sbjct: 94  GLFSEALS-LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             +L+ MYCRF   + ARK+F++MP+RD  SWN++ISGY  +G   EAL+I    R  GV
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 212

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D  T++S+L  C    ++  G +IH  I K G++ ++ V+N L++MY KF  +    R
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD+M+ RD VSWN++I  Y Q      +   F  M     +PDLLT+ S+      L D
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 331

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + VH +++  G+   D    N +++MYAK G + ++  VF G+  KD +SWN++I 
Sbjct: 332 LEFGKYVHDYMITSGYEC-DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 390

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y QNG   EA+++F+MM+   ++ P+  TYV +L   + +G L  G ++H  + K    
Sbjct: 391 VYIQNGSFDEAMKLFKMMK--TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN 448

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII-SCHGIHGQG-DKALNFFR 423
            ++ V+  LVDMY KCG + D++ +F  +     + WN II SC  +H +  +  L    
Sbjct: 449 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASC--VHSEDCNLGLRMIS 506

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M  EGV PD  T +S+L  CS      +G+   H    + G++  +     +++++ + 
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSKC 565

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G L  +    + M  + D   W AL+ AC ++G
Sbjct: 566 GSLRNSFQVFKLMKTK-DVVTWTALISACGMYG 597



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 238/492 (48%), Gaps = 7/492 (1%)

Query: 31  FYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD-DM 89
           F +    L +        K+H  ++ LG    V  +A L+  Y  F     +  +F    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P  +   WN++I     +G   EAL +  E +   +  D  T  S++  CA   +     
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            IH  ++  G   +L++ N LI+MY +F  +  A +VF++M  RDVVSWNS+I+ Y  + 
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   +   +  G+ PD  T+ S+      L        +HG I + G   +DVI+ 
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVN 254

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++ MY K   +     +F+ + ++D +SWNT+I GY+Q GL  E+I++F  ME  N+ 
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVNQF 312

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  SIL A  H+G L  G  +H  +I +    D   +  L++MY KCG +  +  
Sbjct: 313 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 372

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +    SV WN++I+ +  +G  D+A+  F+ M+   V+PD +T+V LL+  +  G 
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGD 431

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +  G+   H    + G   ++     +VD++ + G +G +    +NM  R D   W  ++
Sbjct: 432 LHLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTII 489

Query: 510 GACRIHGNMELG 521
            +C    +  LG
Sbjct: 490 ASCVHSEDCNLG 501



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 200/399 (50%), Gaps = 15/399 (3%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSN 209
           +H  I+  GL  ++  S  LI  YA F     +  VF       +V  WNSII A   + 
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   ++  Q+  +QPD  T  S+ +  A L D   ++S+H  ++  G F  D+ IG
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMG-FGSDLYIG 153

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           NA++DMY +   ++ A  VFE +P++DV+SWN+LI+GY  NG  +EA+E++        +
Sbjct: 154 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S+L A   +G++ +G  IH  + K  +  DV V   L+ MY K   + D   
Sbjct: 214 -PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++    +V WN +I  +   G  ++++  F +M+++  +PD +T  S+L AC H G 
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 331

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +  G +Y H      G +        +++++ + G+L  +      M  + D+  W +++
Sbjct: 332 LEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI 389

Query: 510 GACRIHGNMELGAVASDRLF-----EVDSENVGYYVLMS 543
                +G+ +     + +LF     +V  ++V Y +L+S
Sbjct: 390 NVYIQNGSFD----EAMKLFKMMKTDVKPDSVTYVMLLS 424


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/708 (41%), Positives = 434/708 (61%), Gaps = 8/708 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS Y   G  +EA++ +Y+F    G+ PD YT   VL+AC  L    +G  IH  + K+
Sbjct: 246 LISGYNANGYWNEALEIYYRFR-NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKI 304

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DV V   LL MYC+F      R++FD M +RD+ SWN MI GY Q G   E++ + 
Sbjct: 305 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 364

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM +     D +T+ SIL  C    ++  G  +H Y++  G E +   SN LINMYAK 
Sbjct: 365 MEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 423

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  VF  M  +D VSWNS+I  Y Q+     A   F  M +  ++PD +T V L 
Sbjct: 424 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLL 482

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+  QL D    + +H  + + G F  ++++ N +VDMYAK G +  +  VFE +  +D+
Sbjct: 483 SMSTQLGDLXLGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 541

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WNT+I     +   +  + +   M     + P+  T +SILP  S + A RQG +IH 
Sbjct: 542 ITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSLLAAKRQGKEIHG 600

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + K  L  DV V   L++MY KCG + ++  +F  +     V W A+IS  G++G+G K
Sbjct: 601 CIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKK 660

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M   G+ PDH+ FV+++ ACSHSGLV EG  YFH M++++ I+P ++HY C+V
Sbjct: 661 AVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV 720

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  L  A +FI +MP++PD+SIWGALL ACR+ G+ E+    S+R+ E++ ++ G
Sbjct: 721 DLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTG 780

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SN+YA +GKW+ V  +R   + RGLKK PG S +E+ NKV +F TG +   ++E+
Sbjct: 781 YYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEE 840

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           +   L  L   M   GY+ +  FVL D++EDEK  IL  HSERLAIAFG++++ P +P+Q
Sbjct: 841 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 900

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH  TK+IS+I +RE++VRD+NRFH FKDG CSCGDYW
Sbjct: 901 VMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 281/513 (54%), Gaps = 14/513 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFV 65
           G  SEA+   Y  T    L+PD YTFP V+ AC  L+D    K IH  VL +GF  D+++
Sbjct: 153 GLFSEALS-LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYI 211

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             +L+ MYCRF   + ARK+F++MP+RD  SWN++ISGY  +G   EAL+I    R  GV
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 271

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D  T++S+L  C    ++  G +IH  I K G++ ++ V+N L++MY KF  +    R
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD+M+ RD VSWN++I  Y Q      +   F  M     +PDLLT+ S+      L D
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 390

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + VH +++  G+   D    N +++MYAK G + ++  VF G+  KD +SWN++I 
Sbjct: 391 LEFGKYVHDYMITSGYEC-DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 449

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y QNG   EA+++F+MM+   ++ P+  TYV +L   + +G L  G ++H  + K    
Sbjct: 450 VYIQNGSFDEAMKLFKMMK--TDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN 507

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII-SCHGIHGQG-DKALNFFR 423
            ++ V+  LVDMY KCG + D++ +F  +     + WN II SC  +H +  +  L    
Sbjct: 508 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASC--VHSEDCNLGLRMIS 565

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M  EGV PD  T +S+L  CS      +G+   H    + G++  +     +++++ + 
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSKC 624

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G L  +    + M  + D   W AL+ AC ++G
Sbjct: 625 GSLRNSFQVFKLMKTK-DVVTWTALISACGMYG 656



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 238/492 (48%), Gaps = 7/492 (1%)

Query: 31  FYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD-DM 89
           F +    L +        K+H  ++ LG    V  +A L+  Y  F     +  +F    
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P  +   WN++I     +G   EAL +  E +   +  D  T  S++  CA   +     
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            IH  ++  G   +L++ N LI+MY +F  +  A +VF++M  RDVVSWNS+I+ Y  + 
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   +   +  G+ PD  T+ S+      L        +HG I + G   +DVI+ 
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVN 313

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++ MY K   +     +F+ + ++D +SWNT+I GY+Q GL  E+I++F  ME  N+ 
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVNQF 371

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  SIL A  H+G L  G  +H  +I +    D   +  L++MY KCG +  +  
Sbjct: 372 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 431

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +    SV WN++I+ +  +G  D+A+  F+ M+   V+PD +T+V LL+  +  G 
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGD 490

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +  G+   H    + G   ++     +VD++ + G +G +    +NM  R D   W  ++
Sbjct: 491 LXLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTII 548

Query: 510 GACRIHGNMELG 521
            +C    +  LG
Sbjct: 549 ASCVHSEDCNLG 560



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 200/399 (50%), Gaps = 15/399 (3%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSN 209
           +H  I+  GL  ++  S  LI  YA F     +  VF       +V  WNSII A   + 
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   ++  Q+  +QPD  T  S+ +  A L D   ++S+H  ++  G F  D+ IG
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMG-FGSDLYIG 212

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           NA++DMY +   ++ A  VFE +P++DV+SWN+LI+GY  NG  +EA+E++        +
Sbjct: 213 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 272

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S+L A   +G++ +G  IH  + K  +  DV V   L+ MY K   + D   
Sbjct: 273 -PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++    +V WN +I  +   G  ++++  F +M+++  +PD +T  S+L AC H G 
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 390

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +  G +Y H      G +        +++++ + G+L  +      M  + D+  W +++
Sbjct: 391 LEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI 448

Query: 510 GACRIHGNMELGAVASDRLF-----EVDSENVGYYVLMS 543
                +G+ +     + +LF     +V  ++V Y +L+S
Sbjct: 449 NVYIQNGSFD----EAMKLFKMMKTDVKPDSVTYVMLLS 483


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 287/709 (40%), Positives = 445/709 (62%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS Y   G  +EA+ C +   L +G+  + YTF   L+AC +   +  G +IH ++LK 
Sbjct: 131 IISAYSGNGMCTEAL-CLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+VA +L+ MY RFG    A  +F ++  +D  +WN+M++G+ Q+G   EAL+  
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +++   +  D +++ SI+    R   +L+G  IH Y +K+G + N+ V N LI+MYAK 
Sbjct: 250 YDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKC 309

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M +  R FD M  +D++SW +  A Y Q+   + A      +Q  G+  D   + S+ 
Sbjct: 310 CCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL 369

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                LN     + +HG+ +R G  + D ++ N ++D+Y + GII+ A  +FE +  KDV
Sbjct: 370 LACRGLNCLGKIKEIHGYTIRGG--LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDV 427

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I+ Y  NGLA++A+EVF  M+E   + P+  T VSIL A   +  L++G +IH 
Sbjct: 428 VSWTSMISCYVHNGLANKALEVFSSMKETG-LEPDYVTLVSILSAVCSLSTLKKGKEIHG 486

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  ++  LVDMY +CG ++DA  +F      + + W A+IS +G+HG G+ 
Sbjct: 487 FIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEA 546

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M DE + PDHITF++LL ACSHSGLV+EG+ +  +M+ E+ ++P  +HY C+V
Sbjct: 547 AVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLV 606

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR   L  A+  +++M   P   +W ALLGACRIH N E+G VA+++L E+D +N G
Sbjct: 607 DLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPG 666

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN++A  G+W+ V+EVR   +  GL K PG S IEV NK+  F + ++ HP+ +K
Sbjct: 667 NYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDK 726

Query: 598 IYDELRNLTAKMKSL-GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L  +T K+K   GYV    FVL +V E+EK  +L  HSERLAIA+G++++   +PI
Sbjct: 727 IYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPI 786

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVCGDCH++   +S+  ERE+IVRD++RFHHFKDG+CSCGD+W
Sbjct: 787 RVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 170/524 (32%), Positives = 283/524 (54%), Gaps = 12/524 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M+  YV  G    A++  Y+     G+  D YTFP +LKAC    +L  G +IH   +K 
Sbjct: 29  MMGGYVSNGEALGALE-MYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKY 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G +  VFV  SL+ +Y +    N ARKLFD M VR D  SWN++IS Y  +G   EAL +
Sbjct: 88  GCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCL 147

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM   GV  +  T A+ L  C  S  I  G+ IH  I+K G   +++V+N L+ MY +
Sbjct: 148 FSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVR 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           FG M  A  +F  +  +D+V+WNS++  + Q+     A  FF  +Q A ++PD ++++S+
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISI 267

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                +L    N + +H + ++ G F  ++++GN ++DMYAK   ++     F+ +  KD
Sbjct: 268 IVASGRLGYLLNGKEIHAYAIKNG-FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKD 326

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISW T   GYAQN    +A+E+ + + +   ++ +     SIL A   +  L +  +IH
Sbjct: 327 LISWTTAAAGYAQNKCYLQALELLRQL-QMEGMDVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
              I+  L  D  +   ++D+YG+CG ID A+ +F  +     V W ++ISC+  +G  +
Sbjct: 386 GYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLAN 444

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           KAL  F  M + G+ PD++T VS+L+A CS S L    + +  ++++ F ++  + +   
Sbjct: 445 KALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--T 502

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           +VD++ R G +  A+        R +  +W A++ A  +HG  E
Sbjct: 503 LVDMYARCGSVEDAYKIFTCTKNR-NLILWTAMISAYGMHGYGE 545



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 140/450 (31%), Positives = 232/450 (51%), Gaps = 11/450 (2%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY + G    A  +FD M  R   +WNAM+ GY  +G A+ AL++  EMR  GVS D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
              +L  C   +++  G  IH   +K+G +  +FV N+L+ +YAK   +  A ++FD+M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 192 ER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            R DVVSWNSII+AY  +     A   F+ M +AG+  +  T  +        +  +   
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H  I++ G  + DV + NA+V MY + G +  A  +F  L  KD+++WN+++TG+ QN
Sbjct: 181 QIHAAILKSGRVL-DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           GL SEA+E F  ++   ++ P+Q + +SI+ A   +G L  G +IHA  IKN    ++ V
Sbjct: 240 GLYSEALEFFYDLQNA-DLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILV 298

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMY KC  +      F  +     + W    + +  +    +AL   RQ+  EG+
Sbjct: 299 GNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 431 RPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIK-PHLKHYGCMVDLFGRAGHLGM 488
             D     S+L AC   GL   G+ +  H      G+  P L++   ++D++G  G +  
Sbjct: 359 DVDATMIGSILLAC--RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDY 414

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           A    +++  + D   W +++ +C +H  +
Sbjct: 415 AVRIFESIECK-DVVSWTSMI-SCYVHNGL 442


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/710 (41%), Positives = 438/710 (61%), Gaps = 11/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA++ +++  L + +RP+ YTFP VLK C  + D   GK+IH  V++ 
Sbjct: 169 LVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF 227

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV V  +L+ MY + G  + AR LFD MP RD  SWNAMISGY ++G  +E L++ 
Sbjct: 228 GFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF 287

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   V  D IT+ ++   C   DN   G  +H Y+VK     ++ ++N+LI MY+  
Sbjct: 288 SMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSL 347

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M  +DVVSW ++IA+      P  A   +  M+  GI PD +TLVS+ 
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +        +H   ++ G  +  VI+ N+++DMY+K   +++A  VF  +  K+V
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTG-LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW +LI G   N  + EA+  F+ M+E   + PN  T +S+L A + +GAL +G +IHA
Sbjct: 467 VSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTLISVLSACARIGALMRGKEIHA 524

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  + FD F+   ++DMY +CGR   A++ F    +     WN +++ +   GQ   
Sbjct: 525 HALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKL 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +ML+  + PD ITF+SLL ACS SG+V+EG  YF++M+ ++ + P+LKHY C+V
Sbjct: 584 AVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A++FIQ+MP+RPDA+IWGALL ACRIH N+ELG +A+ R+FE D+++VG
Sbjct: 644 DILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+ N+YA  G W+ V +VRSL R+RGL   PG S +E+  KV  F +G+ +H + ++
Sbjct: 704 YYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKE 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L    +KMK  G+   KS    ++E    + I   HSER AIAFG+I++ P  PI 
Sbjct: 764 INGVLDGFCSKMKENGFGNLKSSFTSEIESSRAD-IFCGHSERQAIAFGLINTAPGMPIW 822

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD--YW 705
           + KNL +C  CHN  KFIS I  REI VRD   +HHFKDG+CSCGD  YW
Sbjct: 823 VXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 256/471 (54%), Gaps = 8/471 (1%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           V +  +LL M+ RFG    A  +F  M  RD  SWN ++ GY ++G   EAL++   M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             +  +  T  S+L  CA   +I  G  IH ++++ G E ++ V N LI MY K G + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A  +FD+M +RD +SWN++I+ Y ++   +     F+ M++  + PDL+T+ ++ S    
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L++ R  R VHG++++   F  D+ + N+++ MY+ LG +  A  VF  +  KDV+SW  
Sbjct: 312 LDNERLGRGVHGYVVKSE-FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I     + L  +A+E ++MM E   I P++ T VS+L A + +G L  GI++H   IK 
Sbjct: 371 MIASLVSHKLPFKAVETYKMM-ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT 429

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L   V V+  L+DMY KC  +D+A+ +F  +   + V W ++I    I+ +  +AL FF
Sbjct: 430 GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFF 489

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFG 481
           RQM  E ++P+ +T +S+L+AC+  G +  G+  + H ++   G    L +   ++D++ 
Sbjct: 490 RQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYV 546

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           R G    A N  Q    + D + W  LL      G  +L     D++ E++
Sbjct: 547 RCGRKVPALN--QFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/510 (25%), Positives = 247/510 (48%), Gaps = 8/510 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N  +   C  GN  +A+  L+ M    + ++     ++L +C        G  ++  +  
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
                 + + N L++M+ +FG +  A  VF +M ERDV SWN ++  Y ++     A   
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  A I+P++ T  S+    A ++D    + +H  ++R G F  DV +GNA++ MY 
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYV 244

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I++A  +F+ +P +D ISWN +I+GY +NG   E +E+F MM E + ++P+  T  
Sbjct: 245 KCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMT 303

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++  A   +   R G  +H  V+K+    D+ +   L+ MY   GR+++A ++F ++   
Sbjct: 304 TVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK 363

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             V W A+I+    H    KA+  ++ M  EG+ PD IT VS+L+AC+  G +  G R  
Sbjct: 364 DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR-L 422

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H +  + G+  H+     ++D++ +   +  A    +N+  +   S W +L+   RI+  
Sbjct: 423 HEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNR 481

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
                +   ++ E    N    + + +  A +G      E+ + A    L+   G+    
Sbjct: 482 SFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHA----LRTGVGFDGFL 537

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
            N  +D++    R  P   +   + +++TA
Sbjct: 538 PNAILDMYVRCGRKVPALNQFNSQKKDVTA 567


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/710 (41%), Positives = 438/710 (61%), Gaps = 11/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA++ +++  L + +RP+ YTFP VLK C  + D   GK+IH  V++ 
Sbjct: 169 LVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF 227

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV V  +L+ MY + G  + AR LFD MP RD  SWNAMISGY ++G  +E L++ 
Sbjct: 228 GFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF 287

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   V  D IT+ ++   C   DN   G  +H Y+VK     ++ ++N+LI MY+  
Sbjct: 288 SMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSL 347

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M  +DVVSW ++IA+      P  A   +  M+  GI PD +TLVS+ 
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +        +H   ++ G  +  VI+ N+++DMY+K   +++A  VF  +  K+V
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTG-LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW +LI G   N  + EA+  F+ M+E   + PN  T +S+L A + +GAL +G +IHA
Sbjct: 467 VSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTLISVLSACARIGALMRGKEIHA 524

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  + FD F+   ++DMY +CGR   A++ F    +     WN +++ +   GQ   
Sbjct: 525 HALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKL 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +ML+  + PD ITF+SLL ACS SG+V+EG  YF++M+ ++ + P+LKHY C+V
Sbjct: 584 AVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A++FIQ+MP+RPDA+IWGALL ACRIH N+ELG +A+ R+FE D+++VG
Sbjct: 644 DILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+ N+YA  G W+ V +VRSL R+RGL   PG S +E+  KV  F +G+ +H + ++
Sbjct: 704 YYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKE 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L    +KMK  G+   KS    ++E    + I   HSER AIAFG+I++ P  PI 
Sbjct: 764 INGVLDGFCSKMKENGFGNLKSSFTSEIESSRAD-IFCGHSERQAIAFGLINTAPGMPIW 822

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD--YW 705
           + KNL +C  CHN  KFIS I  REI VRD   +HHFKDG+CSCGD  YW
Sbjct: 823 VTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 256/471 (54%), Gaps = 8/471 (1%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           V +  +LL M+ RFG    A  +F  M  RD  SWN ++ GY ++G   EAL++   M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             +  +  T  S+L  CA   +I  G  IH ++++ G E ++ V N LI MY K G + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A  +FD+M +RD +SWN++I+ Y ++   +     F+ M++  + PDL+T+ ++ S    
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L++ R  R VHG++++   F  D+ + N+++ MY+ LG +  A  VF  +  KDV+SW  
Sbjct: 312 LDNERLGRGVHGYVVKSE-FGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I     + L  +A+E ++MM E   I P++ T VS+L A + +G L  GI++H   IK 
Sbjct: 371 MIASLVSHKLPFKAVETYKMM-ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT 429

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L   V V+  L+DMY KC  +D+A+ +F  +   + V W ++I    I+ +  +AL FF
Sbjct: 430 GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFF 489

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFG 481
           RQM  E ++P+ +T +S+L+AC+  G +  G+  + H ++   G    L +   ++D++ 
Sbjct: 490 RQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYV 546

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           R G    A N  Q    + D + W  LL      G  +L     D++ E++
Sbjct: 547 RCGRKVPALN--QFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/510 (25%), Positives = 247/510 (48%), Gaps = 8/510 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N  +   C  GN  +A+  L+ M    + ++     ++L +C        G  ++  +  
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
                 + + N L++M+ +FG +  A  VF +M ERDV SWN ++  Y ++     A   
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  A I+P++ T  S+    A ++D    + +H  ++R G F  DV +GNA++ MY 
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYV 244

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I++A  +F+ +P +D ISWN +I+GY +NG   E +E+F MM E + ++P+  T  
Sbjct: 245 KCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMT 303

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++  A   +   R G  +H  V+K+    D+ +   L+ MY   GR+++A ++F ++   
Sbjct: 304 TVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK 363

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             V W A+I+    H    KA+  ++ M  EG+ PD IT VS+L+AC+  G +  G R  
Sbjct: 364 DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR-L 422

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H +  + G+  H+     ++D++ +   +  A    +N+  +   S W +L+   RI+  
Sbjct: 423 HEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNR 481

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
                +   ++ E    N    + + +  A +G      E+ + A    L+   G+    
Sbjct: 482 SFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHA----LRTGVGFDGFL 537

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
            N  +D++    R  P   +   + +++TA
Sbjct: 538 PNAILDMYVRCGRKVPALNQFNSQKKDVTA 567


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/708 (41%), Positives = 435/708 (61%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           + S YV+     EAV  FY+  L SG++P+ ++   ++ AC  L D   GK IH  ++KL
Sbjct: 229 LFSCYVQIDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++WD F A +L+ MY + G    A  +F+ +   D  SWNA+I+G     +  +AL++L
Sbjct: 288 GYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T++S L  CA       G  +H  ++K  +E +LFVS  L++MY+K 
Sbjct: 348 GQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKC 407

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            ++  A   F+ + E+D+++WN+II+ Y Q  + + A   F  M + GI  +  TL ++ 
Sbjct: 408 DLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      R VHG  ++ G F  D+ + N+++D Y K   +  A  +FE   + D+
Sbjct: 468 KSTAGLQVVHVCRQVHGLSVKSG-FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 526

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +S+ ++IT YAQ G   EA+++F  M++  E+ P++    S+L A +++ A  QG ++H 
Sbjct: 527 VSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQLHV 585

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++K     D+F    LV+MY KCG IDDA   F ++     V W+A+I     HG G +
Sbjct: 586 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQ 645

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QML EGV P+HIT VS+L AC+H+GLV+E + YF  M+E FG KP  +HY CM+
Sbjct: 646 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 705

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG +  A   +  MP   +AS+WGALLGA RIH ++ELG  A++ LF ++ E  G
Sbjct: 706 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 765

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++NIYA+ GKWE V EVR L RD  +KK PG S IEV +KV  F  G+R+H + ++
Sbjct: 766 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQE 825

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L+  M   GYVP     L DVE+ EKE +L  HSE+LA+AFG+I++P  +PI+
Sbjct: 826 IYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIR 885

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH   K+I +I  REIIVRD NRFHHFKDG CSCGDYW
Sbjct: 886 VKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 280/520 (53%), Gaps = 8/520 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y + G    A+  F++  L  G++ + +TF  VLKAC   ++L  GK++H  V+  
Sbjct: 128 LISGYAQNGLGGGALMAFHEMHLL-GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFVA +L+ MY +      +++LFD++P R+  SWNA+ S Y Q     EA+ + 
Sbjct: 187 GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLF 246

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L G+  +  +++S++  C    +   G +IH Y++K G +++ F +N L++MYAK 
Sbjct: 247 YEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKV 306

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A+ VF+++ + D+VSWN++IA          A      M+++GI P++ TL S  
Sbjct: 307 GDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSAL 366

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +      R +H  +M+      D+ +   +VDMY+K  ++  A   F  LP KD+
Sbjct: 367 KACAGMGLKELGRQLHSSLMKMD-MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +I+GY+Q     EA+ +F  M +   I  NQ T  +IL + + +  +    ++H 
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 484

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K+    D++V   L+D YGKC  ++DA  +F +      V + ++I+ +  +GQG++
Sbjct: 485 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 544

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M D  ++PD     SLL AC++     +G++  H+   ++G    +     +V
Sbjct: 545 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGNSLV 603

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +++ + G +  A      +  R   S W A++G    HG+
Sbjct: 604 NMYAKCGSIDDAGRAFSELTERGIVS-WSAMIGGLAQHGH 642



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/592 (28%), Positives = 283/592 (47%), Gaps = 56/592 (9%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   ++  +L  C   ++L  G +IH  + K G   D  +   L+++Y +      ARKL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            D+    D  SW+A+ISGY Q+G    AL    EM L GV  +  T +S+L  C+   ++
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  +V  G E ++FV+N L+ MYAK      + R+FD++ ER+VVSWN++ + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q +    A G F  M  +GI+P+  +L S+ +    L D    + +HG++++ G+   D
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW-D 292

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
               NA+VDMYAK+G +  A +VFE +   D++SWN +I G   +    +A+E+   M+ 
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              I PN  T  S L A + +G    G ++H+ ++K  +  D+FV+  LVDMY KC  ++
Sbjct: 353 SG-ICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           DA   F  +P    + WNAIIS +  + +  +AL+ F +M  EG+  +  T  ++L   S
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK--S 469

Query: 446 HSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF------------ 492
            +GL V    R  H +  + G    +     ++D +G+  H+  A               
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 529

Query: 493 ----------------------IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
                                 +Q+M ++PD  +  +LL AC       L A    +   
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC-----ANLSAFEQGKQLH 584

Query: 531 VDSENVGYYV------LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           V     G+ +       + N+YA  G  +      S   +RG+     WS++
Sbjct: 585 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI---VSWSAM 633


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/739 (39%), Positives = 432/739 (58%), Gaps = 37/739 (5%)

Query: 1    MISVYVRCGRLSEAVDCFYQFT------------------------------LTSGLRPD 30
            +IS+Y RCG L +A + FY                                  + G++P 
Sbjct: 371  LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPG 430

Query: 31   FYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
              TF  +L AC N     DGK IH  +L+ G + +  +A +L++MY R G    A+ +F+
Sbjct: 431  RVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE 490

Query: 88   DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
                RD  SWN+MI+G+ Q G+   A  +  EM+ E +  D IT AS+L  C   + +  
Sbjct: 491  GTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALEL 550

Query: 148  GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
            G  IH  I + GL+ ++ + N LINMY + G ++ A  VF  +  RDV+SW ++I     
Sbjct: 551  GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCAD 610

Query: 208  SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
              + + A   F  MQ  G +P   T  S+  +          + V  +I+  G+ + D  
Sbjct: 611  QGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL-DTG 669

Query: 268  IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE-VFQMMEEC 326
            +GNA++  Y+K G +  A  VF+ +P +D++SWN +I GYAQNGL   A+E  +QM E+ 
Sbjct: 670  VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQ- 728

Query: 327  NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             ++ PN+ ++VS+L A S   AL +G ++HA ++K  L  DV V   L+ MY KCG   +
Sbjct: 729  -DVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGE 787

Query: 387  AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
            A  +F  +   + V WNA+I+ +  HG   KAL FF  M  EG++PD  TF S+L+AC+H
Sbjct: 788  AQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNH 847

Query: 447  SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            +GLV EG + F  M+ E+G+ P ++HYGC+V L GRA     A   I  MP  PDA++W 
Sbjct: 848  AGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWE 907

Query: 507  ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
             LLGACRIHGN+ L   A++   ++++ N   Y+L+SN+YA  G+W+ V ++R +   RG
Sbjct: 908  TLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRG 967

Query: 567  LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
            ++K PG S IEV+N +  F   +R+HP+  +IY EL+ L+ +M+  GY PD   VL D+ 
Sbjct: 968  IRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLG 1027

Query: 627  EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
            +  +E  L +HSERLAIA+G+I +PP +PI+IFKNLR+CGDCH  +KFIS++  REII R
Sbjct: 1028 KAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIAR 1087

Query: 687  DSNRFHHFKDGICSCGDYW 705
            DSNRFH FK+G CSC DYW
Sbjct: 1088 DSNRFHSFKNGKCSCEDYW 1106



 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 268/520 (51%), Gaps = 10/520 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+   + G   EA + +Y+   + G+  +  T+  +L AC   + L  GK IH  + + 
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMR-SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED 359

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV +  +L+ MY R G    AR+LF  MP RD  SWNA+I+GY +  +  EA+ + 
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EGV    +T   +L  CA S     G +IH  I++ G++ N  ++N L+NMY + 
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF+    RDV+SWNS+IA + Q     TA+  F  MQ   ++PD +T  S+ 
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVL 539

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S           + +HG I   G  + DV +GNA+++MY + G +  A  VF  L  +DV
Sbjct: 540 SGCKNPEALELGKQIHGRITESGLQL-DVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIH 356
           +SW  +I G A  G   +AIE+F  M+  NE   P + T+ SIL   +    L +G K+ 
Sbjct: 599 MSWTAMIGGCADQGEDMKAIELFWQMQ--NEGFRPVKSTFSSILKVCTSSACLDEGKKVI 656

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A ++ +    D  V   L+  Y K G + DA  +F ++P    V WN II+ +  +G G 
Sbjct: 657 AYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQ 716

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+ F  QM ++ V P+  +FVSLL ACS    + EG+R  H    +  ++  ++    +
Sbjct: 717 TAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR-VHAEIVKRKLQGDVRVGAAL 775

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + ++ + G  G A     N+ +  +   W A++ A   HG
Sbjct: 776 ISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 164/540 (30%), Positives = 285/540 (52%), Gaps = 13/540 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+ +Y +   + E +  F Q + + G+ PD  T+  +L A      L +GK+IH   ++ 
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMS-SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+ V  +L+ M  R G  + A++ F     RD   +NA+I+   Q G+ VEA +  
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR +GV+++  T  SIL  C+ S  + +G LIH +I + G   ++ + N LI+MYA+ 
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F  M +RD++SWN+IIA Y +  D   A   +  MQ  G++P  +T + L 
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A  +   + + +H  I+R G    +  + NA+++MY + G +  A  VFEG   +DV
Sbjct: 439 SACANSSAYADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN++I G+AQ+G    A ++FQ M+   E+ P+  T+ S+L    +  AL  G +IH 
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQN-EELEPDNITFASVLSGCKNPEALELGKQIHG 556

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+ ++ L  DV +   L++MY +CG + DA ++F+ +     + W A+I      G+  K
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF-HMMQEEFGIKPHLKHYGCM 476
           A+  F QM +EG RP   TF S+L  C+ S  + EG++   +++   + +   + +   +
Sbjct: 617 AIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--AL 674

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +  + ++G +  A      MP R D   W  ++     +G   LG  A +  +++  ++V
Sbjct: 675 ISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAGYAQNG---LGQTAVEFAYQMQEQDV 730



 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 167/548 (30%), Positives = 278/548 (50%), Gaps = 26/548 (4%)

Query: 8   CGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
           CG   E V   +Q   T   R    T+  +L+ C   R L + K+IH  +++     D+F
Sbjct: 7   CGPDREDVSNTHQPRPTETERA---TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIF 63

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           ++  L++MY +      A ++F +MP RD  SWN++IS Y Q G   +A  + +EM+  G
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
              + IT  SIL  C     + +G  IH  I+K G + +  V N+L++MY K G +  A 
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRAR 183

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +VF  +  RDVVS+N+++  Y Q        G F  M   GI PD +T ++L       +
Sbjct: 184 QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPS 243

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + +H   +  G    D+ +G A+V M  + G ++SA   F+G   +DV+ +N LI
Sbjct: 244 MLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALI 302

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
              AQ+G   EA E +  M   + +  N+ TY+SIL A S   AL  G  IH+ + ++  
Sbjct: 303 AALAQHGHNVEAFEQYYRMRS-DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             DV +   L+ MY +CG +  A  LFY +P+   + WNAII+ +       +A+  ++Q
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVDLFG 481
           M  EGV+P  +TF+ LL+AC++S   ++G+    M+ E+    GIK +      +++++ 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGK----MIHEDILRSGIKSNGHLANALMNMYR 477

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF------EVDSEN 535
           R G L  A N  +    R D   W +++     HG+ E     + +LF      E++ +N
Sbjct: 478 RCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE----TAYKLFQEMQNEELEPDN 532

Query: 536 VGYYVLMS 543
           + +  ++S
Sbjct: 533 ITFASVLS 540


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/707 (41%), Positives = 426/707 (60%), Gaps = 6/707 (0%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLG 58
           I  Y  CGR   A + F +     G+ P+  T+  VL A  +   L  GK +H  +L  G
Sbjct: 199 IGGYADCGRSETAFEIFQKME-QEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAG 257

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E D  V  +L+ MY + G     R++F+ +  RD  +WN MI G  + G   EA ++ +
Sbjct: 258 HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M+ EGV  + IT   +L  C  S  +  G  IH  + K G   ++ V N LI+MY++ G
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG 377

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            ++ A  VFD+M+ +DV+SW ++I    +S     A   +  MQQAG++P+ +T  S+ +
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             +        R +H  ++  G    D  +GN +V+MY+  G +  A  VF+ +  +D++
Sbjct: 438 ACSSPAALEWGRRIHQQVVEAG-LATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIV 496

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           ++N +I GYA + L  EA+++F  ++E   + P++ TY+++L A ++ G+L    +IH  
Sbjct: 497 AYNAMIGGYAAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAREIHTL 555

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V K     D  V   LV  Y KCG   DA  +F ++ + + + WNAII     HG+G  A
Sbjct: 556 VRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDA 615

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L  F +M  EGV+PD +TFVSLL+ACSH+GL+ EG+RYF  M ++F I P ++HYGCMVD
Sbjct: 616 LQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVD 675

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAG L  A   I+ MP + +  IWGALLGACRIHGN+ +   A++   ++D +N   
Sbjct: 676 LLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVV 735

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YV +S++YA  G W+   ++R L   RG+ K PG S I+V +K+  F   +R+HP+ EKI
Sbjct: 736 YVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKI 795

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y EL  LT  MK  GYVPD   V+ DV+E EKE+ +  HSERLAIA+G+IS+PP + I I
Sbjct: 796 YAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHI 855

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FKNLRVC DCH  TKFIS+I +REII RD NRFHHFKDG+CSCGDYW
Sbjct: 856 FKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 272/525 (51%), Gaps = 20/525 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  Y++ G + +A+    Q     GL PD  T    L +C++   L  G++IH   ++ 
Sbjct: 97  MVVGYIQYGYIEKALKLLRQMQ-QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQA 155

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  +DV VA  +L+MY + G    AR++FD M  +   SW   I GY   G +  A +I 
Sbjct: 156 GLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIF 215

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV  + IT  S+L   +    +  G  +H  I+  G E +  V   L+ MYAK 
Sbjct: 216 QKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC 275

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  +   +VF++++ RD+++WN++I    +      A   +  MQ+ G+ P+ +T V L 
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVIL- 334

Query: 238 SIVAQLNDCRNS------RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                LN C NS      + +H  + + G F  D+ + NA++ MY++ G I  A  VF+ 
Sbjct: 335 -----LNACVNSAALHWGKEIHSRVAKAG-FTSDIGVQNALISMYSRCGSIKDARLVFDK 388

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  KDVISW  +I G A++G  +EA+ V+Q M++   + PN+ TY SIL A S   AL  
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG-VEPNRVTYTSILNACSSPAALEW 447

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IH +V++  L  D  V   LV+MY  CG + DA  +F ++ +   V +NA+I  +  
Sbjct: 448 GRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAA 507

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           H  G +AL  F ++ +EG++PD +T++++L AC++SG + E  R  H +  + G      
Sbjct: 508 HNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL-EWAREIHTLVRKGGFFSDTS 566

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
               +V  + + G    A    + M  R   S W A++G    HG
Sbjct: 567 VGNALVSTYAKCGSFSDASIVFEKMTKRNVIS-WNAIIGGSAQHG 610



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 281/561 (50%), Gaps = 13/561 (2%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           AVD   Q+    G + +   +  +LK C   ++LV G+++H  +++     D +   +L+
Sbjct: 7   AVDVV-QYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 71  HMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           +MY + G    AR+++  +    R   SWNAM+ GY Q G   +AL +L +M+  G++ D
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S L  C     +  G  IH   ++ GL F++ V+N ++NMYAK G +  A  VFD
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFD 185

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M ++ VVSW   I  Y       TA   F  M+Q G+ P+ +T +S+ +  +     + 
Sbjct: 186 KMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKW 245

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            ++VH  I+  G    D  +G A+V MYAK G       VFE L  +D+I+WNT+I G A
Sbjct: 246 GKAVHSRILNAG-HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + G   EA EV+  M+    + PN+ TYV +L A  +  AL  G +IH+RV K     D+
Sbjct: 305 EGGYWEEASEVYNQMQR-EGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDI 363

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            V   L+ MY +CG I DA  +F ++ R   + W A+I      G G +AL  +++M   
Sbjct: 364 GVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQA 423

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           GV P+ +T+ S+L ACS    +  G+R  H    E G+         +V+++   G +  
Sbjct: 424 GVEPNRVTYTSILNACSSPAALEWGRR-IHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIY 546
           A      M ++ D   + A++G    H   +      DRL E  +  + V  Y+ M N  
Sbjct: 483 ARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNAC 540

Query: 547 ANVGKWEGVDEVRSLARDRGL 567
           AN G  E   E+ +L R  G 
Sbjct: 541 ANSGSLEWAREIHTLVRKGGF 561


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/739 (39%), Positives = 437/739 (59%), Gaps = 37/739 (5%)

Query: 1    MISVYVRCGRLSEAVDCF------------------------------YQFTLTSGLRPD 30
            +IS+Y RCG L  A + F                              Y+   + G++P 
Sbjct: 426  LISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPG 485

Query: 31   FYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
              TF  +L AC N     DGK IH  +L+ G + +  +A +L++MY R G    A+ +F+
Sbjct: 486  RVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFE 545

Query: 88   DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
                RD  SWN+MI+G+ Q G+   A  +  EM+ EG+  D IT AS+L  C   + +  
Sbjct: 546  GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 148  GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
            G  IH+ I++ GL+ ++ + N LINMY + G ++ A  VF  +  R+V+SW ++I  +  
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFAD 665

Query: 208  SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
              +   A   F  MQ  G +P   T  S+             + V   I+  G+ + D  
Sbjct: 666  QGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYEL-DTG 724

Query: 268  IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE-VFQMMEEC 326
            +GNA++  Y+K G +  A  VF+ +P +D++SWN +I GYAQNGL   A++  +QM E+ 
Sbjct: 725  VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 327  NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
              +  N+ ++VSIL A S   AL +G ++HA ++K  +  DV V   L+ MY KCG +++
Sbjct: 785  --VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEE 842

Query: 387  AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
            A  +F      + V WNA+I+ +  HG   KAL+FF  M  EG++PD  TF S+L+AC+H
Sbjct: 843  AQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNH 902

Query: 447  SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            SGLV EG R F  ++ + G+ P ++HYGC+V L GRAG    A   I  MP  PDA++W 
Sbjct: 903  SGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWE 962

Query: 507  ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
             LLGACRIHGN+ L   A++   ++++ N   YVL+SN+YA  G+W+ V ++R +   RG
Sbjct: 963  TLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRG 1022

Query: 567  LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
            ++K PG S IEV+N +  F   +R+HP+  +IY+EL+ L+ +M+  GY PD  +VL +++
Sbjct: 1023 IRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLD 1082

Query: 627  EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
            ++ +E  L +HSERLAIA+G++ +PP +PI+IFKNLR+CGDCH  +KFIS++  REII R
Sbjct: 1083 KEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIAR 1142

Query: 687  DSNRFHHFKDGICSCGDYW 705
            DSNRFH FK+G CSC D+W
Sbjct: 1143 DSNRFHTFKNGKCSCEDFW 1161



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/545 (31%), Positives = 278/545 (51%), Gaps = 23/545 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+   + G   EA + +YQ   + G+  +  T+  VL AC   + L  G+ IH  + ++
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMR-SDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV 414

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV +  SL+ MY R G    AR+LF+ MP RD  SWNA+I+GY +  +  EA+ + 
Sbjct: 415 GHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLY 474

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EGV    +T   +L  C  S     G +IH  I++ G++ N  ++N L+NMY + 
Sbjct: 475 KQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRC 534

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF+    RD++SWNS+IA + Q      A+  F  M++ G++PD +T  S+ 
Sbjct: 535 GSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV- 593

Query: 238 SIVAQLNDCRN------SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                L  C+N       R +H  I+  G  + DV +GNA+++MY + G +  A  VF  
Sbjct: 594 -----LVGCKNPEALELGRQIHMLIIESGLQL-DVNLGNALINMYIRCGSLQDAYEVFHS 647

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           L  ++V+SW  +I G+A  G   +A E+F  M+  +   P + T+ SIL A      L +
Sbjct: 648 LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQN-DGFKPVKSTFSSILKACMSSACLDE 706

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G K+ A ++ +    D  V   L+  Y K G + DA  +F ++P    + WN +I+ +  
Sbjct: 707 GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQ 766

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +G G  AL F  QM ++GV  +  +FVS+L ACS    + EG+R  H    +  ++  ++
Sbjct: 767 NGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR-VHAEIVKRKMQGDVR 825

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
               ++ ++ + G L  A     N     +   W A++ A   HG   L + A D    +
Sbjct: 826 VGAALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMINAYAQHG---LASKALDFFNCM 881

Query: 532 DSENV 536
           D E +
Sbjct: 882 DKEGI 886



 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/540 (29%), Positives = 280/540 (51%), Gaps = 13/540 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+ +Y +   + E +  F Q + + G+ PD  T+  +L A      L +GK+IH   +  
Sbjct: 255 MLGLYAQKAYVEECIGLFGQMS-SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE 313

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+ V  +L  M+ R G    A++  +    RD   +NA+I+   Q G+  EA +  
Sbjct: 314 GLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQY 373

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR +GV M+  T  S+L  C+ S  + +G LIH +I + G   ++ + N+LI+MYA+ 
Sbjct: 374 YQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARC 433

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F+ M +RD++SWN+IIA Y +  D   A   +  MQ  G++P  +T + L 
Sbjct: 434 GDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLL 493

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S     +   + + +H  I+R G    +  + NA+++MY + G I  A  VFEG   +D+
Sbjct: 494 SACTNSSAYSDGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDI 552

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN++I G+AQ+G    A ++F  M++   + P++ T+ S+L    +  AL  G +IH 
Sbjct: 553 ISWNSMIAGHAQHGSYEAAYKLFLEMKK-EGLEPDKITFASVLVGCKNPEALELGRQIHM 611

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I++ L  DV +   L++MY +CG + DA  +F+ +   + + W A+I      G+  K
Sbjct: 612 LIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRK 671

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF-HMMQEEFGIKPHLKHYGCM 476
           A   F QM ++G +P   TF S+L AC  S  + EG++   H++   + +   + +   +
Sbjct: 672 AFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--AL 729

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +  + ++G +  A      MP R D   W  ++     +G   LG  A    +++  + V
Sbjct: 730 ISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAGYAQNG---LGGTALQFAYQMQEQGV 785



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/514 (29%), Positives = 251/514 (48%), Gaps = 10/514 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           G   E +   YQ   T   R  +          R+L + K+IH  +++ G   D+F++  
Sbjct: 63  GSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNL 122

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++MY +    + A ++F  MP RD  SWN++IS Y Q G   +A  + +EM+  G    
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPS 182

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            IT  SIL  C     +  G  IH  I++ G + +  V N+L+NMY K   +  A +VF 
Sbjct: 183 KITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS 242

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            +  RDVVS+N+++  Y Q        G F  M   GI PD +T ++L       +    
Sbjct: 243 GIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE 302

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   +  G    D+ +G A+  M+ + G +  A    E    +DV+ +N LI   A
Sbjct: 303 GKRIHKLAVNEG-LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALA 361

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           Q+G   EA E +  M   + +  N+ TY+S+L A S   AL  G  IH+ + +     DV
Sbjct: 362 QHGHYEEAFEQYYQMRS-DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDV 420

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            +   L+ MY +CG +  A  LF  +P+   + WNAII+ +       +A+  ++QM  E
Sbjct: 421 QIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVDLFGRAGH 485
           GV+P  +TF+ LL+AC++S   S+G+    M+ E+    GIK +      +++++ R G 
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSDGK----MIHEDILRSGIKSNGHLANALMNMYRRCGS 536

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           +  A N  +    R D   W +++     HG+ E
Sbjct: 537 IMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSYE 569


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/708 (40%), Positives = 429/708 (60%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +I  Y  CG    A + F Q     G+ P+  T+  VL A      L  GK +H  +L  
Sbjct: 316  IIGGYADCGHSEIAFEIF-QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNA 374

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G E D+ V  +L+ MY + G     R++F+ +  RD  +WN MI G  + GN  EA +I 
Sbjct: 375  GHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIY 434

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M+ EG+  + IT   +L  C     +  G  IH  +VK G  F++ V N LI+MYA+ 
Sbjct: 435  HQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARC 494

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G ++ A  +F++M+ +D++SW ++I    +S     A   F  MQQAG++P+ +T  S+ 
Sbjct: 495  GSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSIL 554

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            +  +        R +H  ++  G    D  + N +V+MY+  G +  A  VF+ +  +D+
Sbjct: 555  NACSSPAALDWGRRIHQQVIEAG-LATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +++N +I GYA + L  EA+++F  ++E   + P++ TY+++L A ++ G+L    +IH+
Sbjct: 614  VAYNAMIGGYAAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAKEIHS 672

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             V+K+    D  +   LV  Y KCG   DA+ +F ++ + + + WNAII     HG+G  
Sbjct: 673  LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQD 732

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
             L  F +M  EG++PD +TFVSLL+ACSH+GL+ EG+RYF  M  +FGI P ++HYGCMV
Sbjct: 733  VLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMV 792

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GRAG L      I+ MP + +  IWGALLGACRIHGN+ +   A++   ++D +N  
Sbjct: 793  DLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAA 852

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YV +S++YA  G W+   ++R L   RG+ K PG S IEV +K+  F   +R+HP+ EK
Sbjct: 853  VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEK 912

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            IY EL  LT  MK  GYVPD   V+ DV+E EKE+ +  HSERLAIA+G+IS+ P +PI+
Sbjct: 913  IYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIR 972

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            IFKNLRVC DCH  TKFI++I +REI+ RD NRFHHFKDG+CSCGDYW
Sbjct: 973  IFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/525 (32%), Positives = 279/525 (53%), Gaps = 20/525 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  YV+ G + EA+    +     GL     T   +L +C++   L  G++IH   +K 
Sbjct: 215 MVVGYVQYGYIEEALKLLREMQ-QHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
              +DV VA  +L+MY + G  + AR++FD M  +   SW  +I GY   G++  A +I 
Sbjct: 274 RLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EGV  + IT  ++L   +    +  G  +H +I+  G E +L V   L+ MYAK 
Sbjct: 334 QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKC 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  +   +VF++++ RD+++WN++I    +  +   A   +  MQ+ G+ P+ +T V L 
Sbjct: 394 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVIL- 452

Query: 238 SIVAQLNDCRN------SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                LN C N       R +H  +++ G FM D+ + NA++ MYA+ G I  A  +F  
Sbjct: 453 -----LNACVNPTALHWGREIHSRVVKDG-FMFDISVQNALISMYARCGSIKDARLLFNK 506

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  KD+ISW  +I G A++GL +EA+ VFQ M++   + PN+ TY SIL A S   AL  
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG-LKPNRVTYTSILNACSSPAALDW 565

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IH +VI+  L  D  VA  LV+MY  CG + DA  +F ++ +   V +NA+I  +  
Sbjct: 566 GRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAA 625

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           H  G +AL  F ++ +EG++PD +T++++L AC++SG + E  +  H +  + G      
Sbjct: 626 HNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL-EWAKEIHSLVLKDGYLSDTS 684

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
               +V  + + G    A      M  R   S W A++G C  HG
Sbjct: 685 LGNALVSTYAKCGSFSDALLVFDKMMKRNVIS-WNAIIGGCAQHG 728



 Score =  271 bits (694), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 177/554 (31%), Positives = 279/554 (50%), Gaps = 12/554 (2%)

Query: 20  QFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           Q+    G R +   +  +LK C   ++LV G+++H  +++     D +   +L++MY + 
Sbjct: 130 QYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQC 189

Query: 77  GLANVARKLFDDM--PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           G    AR++++ +    R   SWNAM+ GY Q G   EAL +L EM+  G+++   T   
Sbjct: 190 GSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMR 249

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C     +  G  IH+  +K  L F++ V+N ++NMYAK G +  A  VFD+M  + 
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VVSW  II  Y        A   F  MQQ G+ P+ +T +++ +  +     +  ++VH 
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHS 369

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            I+  G    D+ +G A+V MYAK G       VFE L  +D+I+WNT+I G A+ G   
Sbjct: 370 HILNAG-HESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE 428

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA E++  M+    + PN+ TYV +L A  +  AL  G +IH+RV+K+   FD+ V   L
Sbjct: 429 EASEIYHQMQR-EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL 487

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           + MY +CG I DA  LF ++ R   + W A+I      G G +AL  F+ M   G++P+ 
Sbjct: 488 ISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNR 547

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +T+ S+L ACS    +  G+R  H    E G+         +V+++   G +  A     
Sbjct: 548 VTYTSILNACSSPAALDWGRR-IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFD 606

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKW 552
            M  R D   + A++G    H   +      DRL E  +  + V  Y+ M N  AN G  
Sbjct: 607 RMTQR-DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSL 664

Query: 553 EGVDEVRSLARDRG 566
           E   E+ SL    G
Sbjct: 665 EWAKEIHSLVLKDG 678



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 204/414 (49%), Gaps = 9/414 (2%)

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           A+D++  ++ +G  ++      +L  C    ++++G  +H +I++H    + +  N LIN
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 173 MYAKFGMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           MY + G +  A +V++++   ER V SWN+++  Y Q      A      MQQ G+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T + L S     +     R +H   M +   + DV + N +++MYAK G I+ A  VF+
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAM-KARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  K V+SW  +I GYA  G +  A E+FQ M++   + PN+ TY+++L A+S   AL+
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQ-EGVVPNRITYINVLNAFSGPAALK 362

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G  +H+ ++      D+ V T LV MY KCG   D   +F ++     + WN +I    
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
             G  ++A   + QM  EG+ P+ IT+V LL AC +   +  G R  H    + G    +
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWG-REIHSRVVKDGFMFDI 481

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
                ++ ++ R G +  A      M VR D   W A++G     G   LGA A
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSG---LGAEA 531


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/710 (40%), Positives = 435/710 (61%), Gaps = 12/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y   G   +A+D +++F +T G+ PD +T   VL AC +L+   +G  +H  + K+
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMT-GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKI 251

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV +   LL MY +F     AR++F  M V+DS +WN MI GY Q G    ++ + 
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M ++G   D +++ S +  C +S ++  G  +H Y++  G E +    N LI+MYAK 
Sbjct: 312 MDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD    +D V+WNS+I  Y QS         F  M+    +PD +T V L 
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLL 429

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +QL D    R +H  +++ G F  ++IIGN+++D+YAK G ++    VF  +   D+
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFG-FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDI 488

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKI 355
           ISWNT+I   A +    +    FQM+ E     + P++ T + ILP  S +   RQG +I
Sbjct: 489 ISWNTVI---ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEI 545

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  + K+    +V +   L++MY KCG +++ + +F  +     V W A+IS  G++G+G
Sbjct: 546 HGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEG 605

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            KAL  F+ M   GV PD + F++ + ACSHSG+V EG R+F  M+ ++ ++P ++HY C
Sbjct: 606 KKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYAC 665

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL  R+G L  A  FI +MP++PDAS+WGALL ACR  GN  +    S ++ E++S++
Sbjct: 666 VVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDD 725

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            GYYVL+SNIYA +GKW+ V  VR+  + +GLKK PG S IE+  +V +F TG+++  +Y
Sbjct: 726 TGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQY 785

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +K+ D L  L   M   GYV D  F L DVEED+K  +L  HSERLAIAFG++++ P SP
Sbjct: 786 DKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSP 845

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + + KNLRVCGDCH  TK+I++I +REI+VRD+NRFH FKDG CSCGD+W
Sbjct: 846 LLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 271/524 (51%), Gaps = 19/524 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           +Y       L+PD +TFP V+ +C  ++D   G  +H   +++GFE D+++  +L+ MY 
Sbjct: 108 YYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYS 167

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           RF   + AR +F++M  RDS SWN++ISGYC +G   +ALD+  + R+ G+  D  T++S
Sbjct: 168 RFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSS 227

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C     +  G+ +H  I K G+  ++ + N L++MY KF  +R A RVF +M  +D
Sbjct: 228 VLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKD 287

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            V+WN++I  Y Q      +   F  M   G  PD+L++ S      Q  D +  + VH 
Sbjct: 288 SVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHK 346

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +++  G F  D +  N ++DMYAK G + +A  VF+    KD ++WN+LI GY Q+G   
Sbjct: 347 YLIGSG-FECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK 405

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           E +E F+MM+   E  P+  T+V +L  +S +  + QG  IH  VIK     ++ +   L
Sbjct: 406 EGLESFKMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSL 463

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +D+Y KCG +DD + +F  +     + WN +I+                +M  EG+ PD 
Sbjct: 464 LDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDE 523

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T + +L  CS   +  +G+   H    + G + ++     +++++ + G L       +
Sbjct: 524 ATVLGILPMCSLLAVRRQGKE-IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 495 NMPVRPDASIWGALLGACRIHG----------NMELGAVASDRL 528
            M  + D   W AL+ A  ++G          +MEL  V  D +
Sbjct: 583 YMKEK-DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSV 625



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 222/451 (49%), Gaps = 6/451 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSG 95
            L + +N    + +H  ++  G    V  +  L+  Y +      +  +F  + P  +  
Sbjct: 28  TLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVY 87

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
            WN++I     +G   +AL    EMR + +  D  T  S++  CAR  ++  G ++H + 
Sbjct: 88  LWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           ++ G E +L++ N LI+MY++F  + +A  VF++M  RD VSWNS+I+ Y  +     A 
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDAL 207

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             +   +  G+ PD  T+ S+      L   +   +VHG I + G    DVIIGN ++ M
Sbjct: 208 DMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG-IAGDVIIGNGLLSM 266

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K   +  A  VF  + VKD ++WNT+I GYAQ G    ++++F  M+  +   P+  +
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDMLS 324

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             S + A    G L+ G  +H  +I +    D      L+DMY KCG +  A  +F    
Sbjct: 325 ITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK 384

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
              SV WN++I+ +   G   + L  F+ M  E  +PD +TFV LL+  S    +++G R
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQG-R 442

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             H    +FG +  L     ++D++ + G +
Sbjct: 443 GIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/708 (41%), Positives = 437/708 (61%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y +   L +AV  FY+      + P  Y F  +L+     +D   G++IH  V+  
Sbjct: 113 MLKGYAKNSTLRDAVR-FYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITN 171

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++F   +++++Y +      A K+F+ MP RD  SWN +++GY Q+G A  A+ ++
Sbjct: 172 GFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVV 231

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G   D IT+ S+LP  A    +  G  IH Y  + G E+ + V+  +++ Y K 
Sbjct: 232 LQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKC 291

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R A  VF  M  R+VVSWN++I  Y Q+ +   A   F  M   G++P  ++++   
Sbjct: 292 GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGAL 351

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    R VH  +  +     DV + N+++ MY+K   ++ A +VF  L  K V
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGF-DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTV 410

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN +I GYAQNG  +EA+ +F  M+  ++I P+  T VS++ A + +   RQ   IH 
Sbjct: 411 VTWNAMILGYAQNGCVNEALNLFCEMQS-HDIKPDSFTLVSVITALADLSVTRQAKWIHG 469

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             I+  +  +VFV T L+D + KCG I  A  LF  +     + WNA+I  +G +G G +
Sbjct: 470 LAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGRE 529

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F +M +  V+P+ ITF+S++ ACSHSGLV EG  YF  M+E +G++P + HYG MV
Sbjct: 530 ALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMV 589

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A  FIQ+MPV+P  ++ GA+LGACRIH N+ELG   +D LF++D ++ G
Sbjct: 590 DLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGG 649

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL++N+YA+   W+ V  VR+    +G++KTPG S +E+ N+V  FY+G+  HP+ ++
Sbjct: 650 YHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKR 709

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  +MK+ GYVPD + +  DVEED KE +L+SHSERLAIAFG++++   + I 
Sbjct: 710 IYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIH 768

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TK+IS +T REIIVRD  RFHHFK+GICSCGDYW
Sbjct: 769 IRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 169/578 (29%), Positives = 288/578 (49%), Gaps = 56/578 (9%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+ C +L +  +I   ++K GF  +      L+ ++C+F     A ++F+ +  +    
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVL 109

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           ++ M+ GY ++    +A+   + MR + V         +L +   + ++  G  IH  ++
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            +G + NLF    ++N+YAK   +  A ++F++M +RD+VSWN+++A Y Q+     A  
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
               MQ+AG +PD +TLVS+   VA L   R  RS+HG+  R G F   V +  A++D Y
Sbjct: 230 VVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAG-FEYMVNVATAMLDTY 288

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGT 335
            K G + SA  VF+G+  ++V+SWNT+I GYAQNG + EA   F +M++E   + P   +
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG--VEPTNVS 346

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            +  L A +++G L +G  +H  + +  + FDV V   L+ MY KC R+D A S+F  + 
Sbjct: 347 MMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLK 406

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC----------- 444
             + V WNA+I  +  +G  ++ALN F +M    ++PD  T VS++TA            
Sbjct: 407 HKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKW 466

Query: 445 ----------------------SHS--GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
                                 +H+  G +   ++ F +MQE      H+  +  M+D +
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQER-----HVITWNAMIDGY 521

Query: 481 GRAGHLGMA---HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           G  GH   A    N +QN  V+P+   + +++ AC   G +E G       FE   EN G
Sbjct: 522 GTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY----YFESMKENYG 577

Query: 538 YYVLMSNIYANV---GKWEGVDEVRSLARDRGLKKTPG 572
               M +  A V   G+   +D+     +D  +K  PG
Sbjct: 578 LEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK--PG 613


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/747 (40%), Positives = 459/747 (61%), Gaps = 48/747 (6%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
            +IS   + G  ++A+  F +    SG + + +    +L A   L D   G+++H  +++ 
Sbjct: 348  IISAEAQFGHFNDALVLFLRMQ-ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                D+ + ++L+ MY + G+   A ++F  +  R+  S+NA+++GY Q G A EAL++ 
Sbjct: 407  LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 118  DEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M+ E G+  D  T  ++L +CA   N   G  IH ++++  +  N+ V   L++MY++
Sbjct: 467  HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE 526

Query: 177  FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             G + +A  +F++M ER+  SWNS+I  Y+Q+ +   A   F  MQ  GI+PD  +L S+
Sbjct: 527  CGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSM 586

Query: 237  TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
             S    L+D +  R +H FI+R     E+ I+   +VDMYAK G ++ A  V++    KD
Sbjct: 587  LSSCVSLSDSQKGRELHNFIVRNT-MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKD 645

Query: 297  VIS-------------------------------WNTLITGYAQNGLASEAIEVFQMMEE 325
            VI                                WN+++ GYA  GL  E+   F  M E
Sbjct: 646  VILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLE 705

Query: 326  CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK----NCLCFDVFVATCLVDMYGKC 381
             ++I  +  T V+I+   S + AL  G ++H+ +IK    NC    V + T LVDMY KC
Sbjct: 706  -SDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNC---SVVLETALVDMYSKC 761

Query: 382  GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            G I  A ++F  +   + V WNA+IS +  HG   +AL  + +M  +G+ P+ +TF+++L
Sbjct: 762  GAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAIL 821

Query: 442  TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            +ACSH+GLV EG R F  MQE++ I+   +HY CMVDL GRAG L  A  F++ MP+ P+
Sbjct: 822  SACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPE 881

Query: 502  ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             S WGALLGACR+H +M++G +A+ RLFE+D +N G YV+MSNIYA  G+W+ V+++R +
Sbjct: 882  VSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQM 941

Query: 562  ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
             + +G+KK PG S IE+N+++ IF+ G++THPK E+IY+ LR+LT + K LGY+PD SF+
Sbjct: 942  MKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFI 1001

Query: 622  LQ---DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
            LQ   D++E+E+E  L  HSERLA++ G+IS P KS I++FKNLR+CGDCH  TKFIS+I
Sbjct: 1002 LQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKI 1061

Query: 679  TEREIIVRDSNRFHHFKDGICSCGDYW 705
            T R II RD+NRFHHF++G CSCGDYW
Sbjct: 1062 TGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 182/604 (30%), Positives = 297/604 (49%), Gaps = 43/604 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           MI  Y R     E +   Y     SG   D +TFP V+KAC  + D    +++  SV+K 
Sbjct: 146 MILAYARVDDYMEVLR-LYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKA 204

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   ++FV  +L+  Y RFG  + A    D++      +WNA+I+GY +  +  EA  I 
Sbjct: 205 GLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIF 264

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D M   GV  D  T AS L VC    +   G  +H  ++  G + + FV N LI+MYAK 
Sbjct: 265 DRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKC 324

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                 L+VFD+M ER+ V+WNSII+A  Q      A   F  MQ++G + +   L S+ 
Sbjct: 325 DDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSIL 384

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    R +HG ++ R     D+I+G+A+VDMY+K G++  A  VF  L  ++ 
Sbjct: 385 MASAGLADIGKGRELHGHLV-RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNE 443

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +S+N L+ GY Q G A EA+E++  M+  + I P+Q T+ ++L   ++     QG +IHA
Sbjct: 444 VSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHA 503

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+  +  ++ V T LV MY +CGR++ A  +F ++   ++  WN++I  +  +G+  +
Sbjct: 504 HLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQE 563

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM----QEEFG-------- 465
           AL  F+QM   G++PD  +  S+L++C       +G+   + +     EE G        
Sbjct: 564 ALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVD 623

Query: 466 ------------------IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
                             IK  +     MV  F  +G    A N    M  R + ++W +
Sbjct: 624 MYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQR-NTALWNS 682

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVL----MSNIYANVGKWEGVDEVRSLAR 563
           +L     + N  L   + +   E+   ++ Y VL    + N+ +++   E  D++ SL  
Sbjct: 683 ILAG---YANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLII 739

Query: 564 DRGL 567
            +G 
Sbjct: 740 KKGF 743



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 248/494 (50%), Gaps = 18/494 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRDSGSWNAMISG 103
           GK IH  ++  G+  D ++   +L +Y R G  +    ARKLF++MP R+  +WN MI  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y +  + +E L +   MR  G   D  T  S++  C   +++     +   +VK GL  N
Sbjct: 150 YARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCN 209

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           LFV   L++ YA+FG M  A+   D++    VV+WN++IA Y +      A G F  M +
Sbjct: 210 LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLK 269

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G+ PD  T  S   +   L      + VH  ++  G F  D  +GNA++DMYAK     
Sbjct: 270 IGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG-FKGDTFVGNALIDMYAKCDDEE 328

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           S   VF+ +  ++ ++WN++I+  AQ G  ++A+ +F  M+E      N+    SIL A 
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESG-YKSNRFNLGSILMAS 387

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + +  + +G ++H  +++N L  D+ + + LVDMY KCG +++A  +F  +   + V +N
Sbjct: 388 AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 404 AIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           A+++ +   G+ ++AL  +  M  E G++PD  TF +LLT C++    ++G R  H    
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQG-RQIHAHLI 506

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL----------GAC 512
              I  ++     +V ++   G L  A      M  R +A  W +++           A 
Sbjct: 507 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNGETQEAL 565

Query: 513 RIHGNMELGAVASD 526
           R+   M+L  +  D
Sbjct: 566 RLFKQMQLNGIKPD 579



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 192/399 (48%), Gaps = 13/399 (3%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR---HA 183
           ++P+  +S++  C  S++   G  IH  ++ +G   + ++   ++ +YA+ G +    +A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            ++F++M ER++ +WN++I AY + +D +     +  M+ +G   D  T  S+      +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D    R +   +++ G    ++ +G A+VD YA+ G ++ A    + +    V++WN +
Sbjct: 189 EDMGGVRQLQSSVVKAG-LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ---GIKIHARVI 360
           I GY +     EA  +F  M +   + P+  T+ S L      GALR    G ++H+++I
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIG-VCPDNFTFASALRV---CGALRSRDGGKQVHSKLI 303

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
                 D FV   L+DMY KC   +  + +F ++   + V WN+IIS     G  + AL 
Sbjct: 304 ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALV 363

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M + G + +     S+L A +    + +G R  H       +   +     +VD++
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLADIGKG-RELHGHLVRNLLNSDIILGSALVDMY 422

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            + G +  AH   +++  R + S + ALL      G  E
Sbjct: 423 SKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQEGKAE 460


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/708 (41%), Positives = 427/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y   G   EA + F       GL PD +TF  +L AC +   L  G+++H  V++ 
Sbjct: 116 MISGYAHRGLGQEAFNLF-TLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEA 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +  V  +L+ MY + G    AR++FD M  RD  SW  +   Y +SG A E+L   
Sbjct: 175 GLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTY 234

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EGV    IT  ++L  C     +  G  IH  IV+     ++ VS  L  MY K 
Sbjct: 235 HAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKC 294

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  VF+ +  RDV++WN++I     S     AHG F  M +  + PD +T +++ 
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A+       + +H   ++ G  + DV  GNA+++MY+K G +  A  VF+ +P +DV
Sbjct: 355 SACARPGGLACGKEIHARAVKDG-LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  L+ GYA  G   E+   F+ M +   +  N+ TY+ +L A S+  AL+ G +IHA
Sbjct: 414 VSWTALVGGYADCGQVVESFSTFKKMLQ-QGVEANKITYMCVLKACSNPVALKWGKEIHA 472

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V+K  +  D+ VA  L+ MY KCG ++DA+ +   +     V WN +I     +G+G +
Sbjct: 473 EVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLE 532

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M  E +RP+  TFV++++AC    LV EG+R F  M++++GI P  KHY CMV
Sbjct: 533 ALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMV 592

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+  RAGHLG A + I  MP +P A++WGALL ACR HGN+E+G  A+++  +++ +N G
Sbjct: 593 DILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAG 652

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV +S IYA  G W  V ++R L ++RG+KK PG S IEV  +V  F  G+++HP+ E+
Sbjct: 653 TYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEE 712

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL  LT ++KSLGYVPD  FV+ D++++ KE  +  HSE+LAIA+G+IS+PP++PI+
Sbjct: 713 IYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIR 772

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH  TKFIS+IT REII RD++RFHHFK+G CSCGDYW
Sbjct: 773 VSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/501 (32%), Positives = 265/501 (52%), Gaps = 9/501 (1%)

Query: 20  QFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           Q+    G + D Y +  +L++C   ++L  GK++H  +L+ G + +V++  +LL +Y   
Sbjct: 33  QYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC 92

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  N AR+LFD    +   SWN MISGY   G   EA ++   M+ EG+  D  T  SIL
Sbjct: 93  GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C+    +  G  +H+ +++ GL  N  V N LI+MYAK G +R A RVFD M  RD V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW ++  AY +S     +   +  M Q G++P  +T +++ S    L      + +H  I
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +       DV +  A+  MY K G +  A  VFE LP +DVI+WNT+I G   +G   EA
Sbjct: 273 VESE-HHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331

Query: 317 IEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
             +F +M++EC  + P++ TY++IL A +  G L  G +IHAR +K+ L  DV     L+
Sbjct: 332 HGMFHRMLKEC--VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALI 389

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           +MY K G + DA  +F ++P+   V W A++  +   GQ  ++ + F++ML +GV  + I
Sbjct: 390 NMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKI 449

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T++ +L ACS+   +  G+   H    + GI   L     ++ ++ + G +  A    + 
Sbjct: 450 TYMCVLKACSNPVALKWGKE-IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEG 508

Query: 496 MPVRPDASIWGALLGACRIHG 516
           M  R D   W  L+G    +G
Sbjct: 509 MSTR-DVVTWNTLIGGLAQNG 528



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 215/396 (54%), Gaps = 4/396 (1%)

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D+L  +  +G  +D      +L  C ++ ++  G  +H +I++ G++ N+++ N L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
              G +  A R+FD+   + VVSWN +I+ Y        A   FT MQQ G++PD  T V
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+ S  +        R VH  +M  G    +  +GNA++ MYAK G +  A  VF+ +  
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAG-LANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +D +SW TL   YA++G A E+++ +  M +   + P++ TY+++L A   + AL +G +
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQ-EGVRPSRITYMNVLSACGSLAALEKGKQ 267

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IHA+++++    DV V+T L  MY KCG + DA  +F  +P    + WN +I      GQ
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            ++A   F +ML E V PD +T++++L+AC+  G ++ G+   H    + G+   ++   
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE-IHARAVKDGLVSDVRFGN 386

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +++++ +AG +  A      MP R D   W AL+G
Sbjct: 387 ALINMYSKAGSMKDARQVFDRMPKR-DVVSWTALVG 421


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/709 (41%), Positives = 433/709 (61%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    A+D  Y   L  G+RP+ YT+P VLKAC  L+   DG +IH      
Sbjct: 80  IIRAYAWNGPFDGAID-LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMF 138

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV  +L+  Y + G+   A++LF  M  RD  +WNAMI+G    G   +A+ ++
Sbjct: 139 GLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG+  +  T+  +LP    +  +  G  +H Y V+   +  + V   L++MYAK 
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKC 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSL 236
             + +A ++FD M  R+ VSW+++I  Y  S+    A   F  M  +  + P  +TL S+
Sbjct: 259 QCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A+L D    R +H +I++ G  + D+++GN ++ MYAK G+I+ A   F+ +  KD
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVL-DILLGNTLLSMYAKCGVIDDAIRFFDEMNPKD 377

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S++ +++G  QNG A+ A+ +F+MM+  + I+P+  T + +LPA SH+ AL+ G   H
Sbjct: 378 SVSFSAIVSGCVQNGNAAVALSIFRMMQ-LSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +I      D  +   L+DMY KCG+I  A  +F ++ R   V WNA+I  +GIHG G 
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  +L  G++PD ITF+ LL++CSHSGLV EG+ +F  M  +F I P ++H  CM
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VD+ GRAG +  AH+FI+NMP  PD  IW ALL ACRIH N+ELG   S ++  +  E+ 
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G +VL+SNIY+  G+W+    +R   +D GLKK PG S IE+N  V  F  G+++H +  
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLS 676

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  +L  L  +MK LGY  + SFV QDVEE+EKE IL  HSE+LAIAFGI++     PI
Sbjct: 677 QINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPI 736

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVCGDCH   KF++ IT+REI VRD+NRFHHFK+G C+CGD+W
Sbjct: 737 LVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 268/537 (49%), Gaps = 16/537 (2%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC   ++L + KKIH   LK     D  V   L  +Y       +AR+LFD++P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN +I  Y  +G    A+D+   M   GV  +  T   +L  C+    I  G+ IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA---YEQSND 210
           +    GLE ++FV   L++ YAK G++  A R+F  M  RDVV+WN++IA    Y   +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            +        MQ+ GI P+  T+V +   V +     + +++HG+ +RR  F   V++G 
Sbjct: 194 AVQ---LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS-FDNGVVVGT 249

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK   +  A  +F+ + V++ +SW+ +I GY  +    EA+E+F  M   + ++
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P   T  S+L A + +  L +G K+H  +IK     D+ +   L+ MY KCG IDDA+  
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++    SV ++AI+S    +G    AL+ FR M   G+ PD  T + +L ACSH   +
Sbjct: 370 FDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAAL 429

Query: 451 SEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             G   + +++   F     + +   ++D++ + G +  A      M  R D   W A++
Sbjct: 430 QHGFCSHGYLIVRGFATDTLICN--ALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMI 486

Query: 510 GACRIHG-NMELGAVASDRL-FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
               IHG  ME   +  D L   +  +++ +  L+S+   +    EG     +++RD
Sbjct: 487 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRD 543



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 10/235 (4%)

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           +  Y+ +L A     +L +  KIH   +KN    D  V   L  +Y  C ++  A  LF 
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           ++P  S + WN II  +  +G  D A++ +  ML  GVRP+  T+  +L ACS    + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G    H   + FG++  +     +VD + + G L  A     +M  R D   W A++  C
Sbjct: 128 GVE-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
            ++G   L   A   + ++  E +       N    VG    V E ++L   + L
Sbjct: 186 SLYG---LCDDAVQLIMQMQEEGI-----CPNSSTIVGVLPTVGEAKALGHGKAL 232


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/709 (41%), Positives = 433/709 (61%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    A+D  Y   L  G+RP+ YT+P VLKAC  L+   DG +IH      
Sbjct: 80  IIRAYAWNGPFDGAID-LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMF 138

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV  +L+  Y + G+   A++LF  M  RD  +WNAMI+G    G   +A+ ++
Sbjct: 139 GLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG+  +  T+  +LP    +  +  G  +H Y V+   +  + V   L++MYAK 
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKC 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSL 236
             + +A ++FD M  R+ VSW+++I  Y  S+    A   F  M  +  + P  +TL S+
Sbjct: 259 QCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A+L D    R +H +I++ G  + D+++GN ++ MYAK G+I+ A   F+ +  KD
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVL-DILLGNTLLSMYAKCGVIDDAIRFFDXMNPKD 377

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S++ +++G  QNG A+ A+ +F+MM+  + I+P+  T + +LPA SH+ AL+ G   H
Sbjct: 378 SVSFSAIVSGCVQNGNAAVALSIFRMMQ-LSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +I      D  +   L+DMY KCG+I  A  +F ++ R   V WNA+I  +GIHG G 
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  +L  G++PD ITF+ LL++CSHSGLV EG+ +F  M  +F I P ++H  CM
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VD+ GRAG +  AH+FI+NMP  PD  IW ALL ACRIH N+ELG   S ++  +  E+ 
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G +VL+SNIY+  G+W+    +R   +D GLKK PG S IE+N  V  F  G+++H +  
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLS 676

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  +L  L  +MK LGY  + SFV QDVEE+EKE IL  HSE+LAIAFGI++     PI
Sbjct: 677 QINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPI 736

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVCGDCH   KF++ IT+REI VRD+NRFHHFK+G C+CGD+W
Sbjct: 737 LVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 267/537 (49%), Gaps = 16/537 (2%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC   ++L + KKIH   LK     D  V   L  +Y       +AR+LFD++P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN +I  Y  +G    A+D+   M   GV  +  T   +L  C+    I  G+ IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA---YEQSND 210
           +    GLE ++FV   L++ YAK G++  A R+F  M  RDVV+WN++IA    Y   +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            +        MQ+ GI P+  T+V +   V +     + +++HG+ +RR  F   V++G 
Sbjct: 194 AVQ---LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS-FDNGVVVGT 249

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK   +  A  +F+ + V++ +SW+ +I GY  +    EA+E+F  M   + ++
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P   T  S+L A + +  L +G K+H  +IK     D+ +   L+ MY KCG IDDA+  
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  +    SV ++AI+S    +G    AL+ FR M   G+ PD  T + +L ACSH   +
Sbjct: 370 FDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAAL 429

Query: 451 SEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             G   + +++   F     + +   ++D++ + G +  A      M  R D   W A++
Sbjct: 430 QHGFCSHGYLIVRGFATDTLICN--ALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMI 486

Query: 510 GACRIHG-NMELGAVASDRL-FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
               IHG  ME   +  D L   +  +++ +  L+S+   +    EG     +++RD
Sbjct: 487 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRD 543



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 10/235 (4%)

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           +  Y+ +L A     +L +  KIH   +KN    D  V   L  +Y  C ++  A  LF 
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           ++P  S + WN II  +  +G  D A++ +  ML  GVRP+  T+  +L ACS    + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G    H   + FG++  +     +VD + + G L  A     +M  R D   W A++  C
Sbjct: 128 GVE-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
            ++G   L   A   + ++  E +       N    VG    V E ++L   + L
Sbjct: 186 SLYG---LCDDAVQLIMQMQEEGI-----CPNSSTIVGVLPTVGEAKALGHGKAL 232


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/708 (40%), Positives = 432/708 (61%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  + +   L +A+  F +      + P  Y F  +LK C +  +   GK+IH  ++K 
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMR-DDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+F    L +MY +    + ARK+FD MP RD  SWN +++GY Q+G A  AL+++
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + M  E +    IT+ S+LP  +    I  G  IH Y ++ G +  + ++  L++MYAK 
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKC 284

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  +FD M+ER+VVSWNS+I AY Q+ +P  A   F  M   G++P  ++++   
Sbjct: 285 GSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    R +H   +       +V + N+++ MY K   +++A ++F  L  + +
Sbjct: 345 HACADLGDLERGRFIHKLSVELE-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTI 403

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I G+AQNG   EA+  F  M+    + P+  TYVS++ A + +        IH 
Sbjct: 404 VSWNAMILGFAQNGRPIEALNYFSQMQ-ARTVKPDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++NCL  +VFV T LVDMY KCG I  A  +F  +       WNA+I  +G HG G  
Sbjct: 463 VVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKA 522

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M    +RP+ +TF+S+++ACSHSGLV  G + FHMM+E + I+P + HYG MV
Sbjct: 523 ALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMV 582

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A +FI  MPV+P  +++GA+LGAC+IH N+      ++RLFE++ E+ G
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGG 642

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL++NIY     WE V +VR     +GL+KTPG S +E+ N+V  F++G+  HP  +K
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKK 702

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++K  GYVPD + +L  +E+D KE +L+SHSE+LAI+FG++++   + I 
Sbjct: 703 IYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIH 761

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCHN TK+IS +T REIIVRD  RFHHFK+G CSCGDYW
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 257/503 (51%), Gaps = 10/503 (1%)

Query: 30  DFYTFPP--VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           + Y  P   +L+ C +L + + I   + K G   +      L+ ++CR+G  + A ++F+
Sbjct: 34  NVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFE 93

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            +  + +  +  M+ G+ +  +  +AL     MR + V         +L VC     +  
Sbjct: 94  PIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRV 153

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH  +VK G   +LF    L NMYAK   +  A +VFD+M ERD+VSWN+I+A Y Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A      M +  ++P  +T+VS+   V+ L   R  + +HG+ MR G F   V 
Sbjct: 214 NGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAG-FDSLVN 272

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           I  A+VDMYAK G + +A  +F+G+  ++V+SWN++I  Y QN    EA+ +FQ M +  
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD-E 331

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + P   + +  L A + +G L +G  IH   ++  L  +V V   L+ MY KC  +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            S+F ++   + V WNA+I     +G+  +ALN+F QM    V+PD  T+VS++TA +  
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAEL 451

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             ++   ++ H +     +  ++     +VD++ + G + +A   I +M      + W A
Sbjct: 452 S-ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNA 509

Query: 508 LLGACRIHGNMELGAVASDRLFE 530
           ++     HG   +G  A + LFE
Sbjct: 510 MIDGYGTHG---IGKAALE-LFE 528


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/708 (41%), Positives = 431/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I+ Y + G + EA   F Q  +  GL P   TF  VL AC +   L  GK++H  V+  
Sbjct: 129 LIAGYAQVGHVKEAFALFRQM-VDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTA 187

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D  +  +L+ MY + G  + AR++FD + +RD  ++N M+ GY +SG+  +A ++ 
Sbjct: 188 GFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELF 247

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+  G+  + I+  SIL  C   + +  G  +H   +  GL  ++ V+ +LI MY   
Sbjct: 248 YRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTC 307

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFD M  RDVVSW  +I  Y ++ +   A G F TMQ+ GIQPD +T + + 
Sbjct: 308 GSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIM 367

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A   +  ++R +H  +   G F  D+++  A+V MYAK G I  A  VF+ +P +DV
Sbjct: 368 NACAISANLNHAREIHSQVDIAG-FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDV 426

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+ +I  Y +NG  +EA E F +M+  N I P+  TY+++L A  H+GAL  G++I+ 
Sbjct: 427 VSWSAMIGAYVENGYGTEAFETFHLMKRSN-IEPDGVTYINLLNACGHLGALDVGMEIYT 485

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           + IK  L   V +   L+ M  K G ++ A  +F  + R   + WNA+I  + +HG   +
Sbjct: 486 QAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNARE 545

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +ML E  RP+ +TFV +L+ACS +G V EG+R+F  + E  GI P +K YGCMV
Sbjct: 546 ALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMV 605

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   I++MPV+P +SIW +LL ACRIHGN+++   A++R   +D  +  
Sbjct: 606 DLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGA 665

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV +S++YA  G WE V +VR +   RG++K  G + IEV  KV  F   +R+HP   +
Sbjct: 666 VYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGE 725

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL  L   +K  GY+P    VL DV E +KE  ++ HSE+LAIA+G++S P  +PI+
Sbjct: 726 IYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIR 785

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+KNLRVC DCH+ +KFIS++T REII RD++RFHHFKDG+CSCGDYW
Sbjct: 786 IYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 150/505 (29%), Positives = 255/505 (50%), Gaps = 9/505 (1%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D  T+  + + C  L D   GK++   +++ G + +++   +L+ +Y   G    AR++F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D +  +   +WNA+I+GY Q G+  EA  +  +M  EG+    IT  S+L  C+    + 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H  +V  G   +  +   L++MY K G M  A +VFD +  RDV ++N ++  Y 
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S D   A   F  MQQ G++P+ ++ +S+             ++VH   M  G  ++D+
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG-LVDDI 294

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +  +++ MY   G I  A  VF+ + V+DV+SW  +I GYA+NG   +A  +F  M+E 
Sbjct: 295 RVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQE- 353

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I P++ TY+ I+ A +    L    +IH++V       D+ V+T LV MY KCG I D
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +PR   V W+A+I  +  +G G +A   F  M    + PD +T+++LL AC H
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGH 473

Query: 447 SGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            G +  G   Y   ++ +  +  H+     ++ +  + G +  A      M VR D   W
Sbjct: 474 LGALDVGMEIYTQAIKAD--LVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITW 530

Query: 506 GALLGACRIHGNMELGAVASDRLFE 530
            A++G   +HGN        DR+ +
Sbjct: 531 NAMIGGYSLHGNAREALYLFDRMLK 555



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 202/401 (50%), Gaps = 4/401 (0%)

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           V A D+L  +   G  +D  T   +   C    +   G  +  +I++ G + N++  N L
Sbjct: 39  VGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTL 98

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I +Y+  G +  A ++FD +  + VV+WN++IA Y Q      A   F  M   G++P +
Sbjct: 99  IKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSI 158

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T +S+    +        + VH  ++  G F+ D  IG A+V MY K G ++ A  VF+
Sbjct: 159 ITFLSVLDACSSPAGLNWGKEVHAQVVTAG-FVSDFRIGTALVSMYVKGGSMDDARQVFD 217

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           GL ++DV ++N ++ GYA++G   +A E+F  M++   + PN+ +++SIL       AL 
Sbjct: 218 GLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVG-LKPNKISFLSILDGCWTPEALA 276

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G  +HA+ +   L  D+ VAT L+ MY  CG I+ A  +F  +     V W  +I  + 
Sbjct: 277 WGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYA 336

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            +G  + A   F  M +EG++PD IT++ ++ AC+ S  ++   R  H   +  G    L
Sbjct: 337 ENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA-REIHSQVDIAGFGTDL 395

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
                +V ++ + G +  A      MP R D   W A++GA
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/698 (42%), Positives = 424/698 (60%), Gaps = 6/698 (0%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAA 67
           LSEA+       L  GL  D + +  VLK C   ++L+  K++H  ++K   E +  V  
Sbjct: 9   LSEAIVVLMN-RLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMN 67

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +LLH+Y   G    AR +FD +  +   SWNAMI+GY +  +A +A+ +  EM  EGV  
Sbjct: 68  NLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQP 127

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           +  T   IL  CA    +  G  +H  I   GLE ++ V   L+ MY K G +  A R+F
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D +M  D++SW  +I AY QS +   A+     M+Q G +P+ +T VS+ +  A     +
Sbjct: 188 DNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             + VH   +  G  + DV +G A+V MYAK G I+ A  VF+ + V+DV+SWN +I  +
Sbjct: 248 WVKRVHRHALDAGLEL-DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAF 306

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           A++G   EA ++F  M+      P+   ++SIL A +  GAL    KIH   + + L  D
Sbjct: 307 AEHGRGHEAYDLFLQMQ-TEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V V T LV MY K G IDDA  +F ++   + V WNA+IS    HG G  AL  FR+M  
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            GV+PD +TFV++L+ACSH+GLV EG+  +  M + +GI+P + H  CMVDL GRAG L 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A  FI NM V PD + WGALLG+CR +GN+ELG + +    ++D +N   YVL+SNIYA
Sbjct: 486 EAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYA 545

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
             GKW+ V  VR++ R+RG++K PG S IEV+NK+  F   + +HP+ ++I +    +  
Sbjct: 546 EAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIE 605

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           K+K+ GY+PD   VL++    +KE  + SHSE+LAI +G++ +PP +PI++FKNLRVC D
Sbjct: 606 KIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTD 665

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH  TK IS++  REIIVRD+NRFHHFKDG+CSCGDYW
Sbjct: 666 CHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 418/618 (67%), Gaps = 9/618 (1%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWN++I+   +SG++VEAL     MR   +  +  T    +  C+   ++ SG   H   
Sbjct: 119 SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQA 178

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +  G E +LFVS+ L++MY+K G +R A  +FD++  R++VSW S+I  Y Q++D   A 
Sbjct: 179 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 238

Query: 216 GFFTT--MQQAGIQPD------LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
             F    ++++G + D       + +VS+ S  +++++   +  VHGF+++RG F  D+ 
Sbjct: 239 LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG-FEGDLG 297

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + N ++D YAK G +  +  VF+G+  +DVISWN++I  YAQNG+++E++E+F  M +  
Sbjct: 298 VENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG 357

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           EIN N  T  ++L A +H G+ R G  IH +VIK  L  +VFV T ++DMY KCG+++ A
Sbjct: 358 EINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMA 417

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
              F ++   +   W+A+++ +G+HG   +AL  F +M   GV+P++ITFVS+L ACSH+
Sbjct: 418 RKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHA 477

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GL+ EG  +F  M  EF ++P ++HYGCMVDL GRAG+L  A + I+ M +RPD  +WGA
Sbjct: 478 GLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGA 537

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LLGACR+H N++LG +++ +LFE+D +N GYYVL+SNIYA+ G+WE V+ +R L ++ GL
Sbjct: 538 LLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGL 597

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
            K PG+S +++  +V +F  G+R HP++EKIY+ L  L+ K++ +GYVPD + VL DV  
Sbjct: 598 VKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGH 657

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
           +EKE +L  HSE+LA+AFGI+++ P + I I KNLRVCGDCH   KFIS+I +REI+VRD
Sbjct: 658 EEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRD 717

Query: 688 SNRFHHFKDGICSCGDYW 705
           S RFHHF+DG+CSCGDYW
Sbjct: 718 SKRFHHFRDGLCSCGDYW 735



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/488 (32%), Positives = 251/488 (51%), Gaps = 30/488 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G   EA+  F      S L+P+  TFP  +K+C  L+D   G++ H   L  
Sbjct: 123 VIAELARSGDSVEALRAFSSMRKLS-LKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIF 181

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D+FV+++L+ MY + G    AR LFD++  R+  SW +MI+GY Q+ +A  AL + 
Sbjct: 182 GFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLF 241

Query: 118 DEMRLE--------GVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVS 167
            E  +E         V +DPI + S+L  C+R    +I  G  +H +++K G E +L V 
Sbjct: 242 KEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VHGFLIKRGFEGDLGVE 299

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-I 226
           N L++ YAK G +  + RVFD M ERDV+SWNSIIA Y Q+     +   F  M + G I
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 359

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
             + +TL ++    A     R  + +H  +++ G    +V +G +++DMY K G +  A 
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMG-LESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F+ +  K+V SW+ ++ GY  +G A EA+EVF  M     + PN  T+VS+L A SH 
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHA 477

Query: 347 GALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           G L +G      +      FDV        C+VD+ G+ G + +A  L   +  R   V 
Sbjct: 478 GLLEEGWHWFKAMSHE---FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVV 534

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMM 460
           W A++    +H   D      R++ +  + P +  +  LL+   + +G   + +R   +M
Sbjct: 535 WGALLGACRMHKNVDLGEISARKLFE--LDPKNCGYYVLLSNIYADAGRWEDVERMRILM 592

Query: 461 QEEFGIKP 468
           +    +KP
Sbjct: 593 KNSGLVKP 600



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 176/341 (51%), Gaps = 12/341 (3%)

Query: 186 VFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +F++ +++ +V SWNS+IA   +S D + A   F++M++  ++P+  T        + L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           D  + R  H   +  G F  D+ + +A+VDMY+K G +  A  +F+ +  ++++SW ++I
Sbjct: 167 DLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 305 TGYAQNGLASEAIEVFQ--MMEEC-----NEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           TGY QN  A  A+ +F+  ++EE       E+  +    VS+L A S V        +H 
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D+ V   L+D Y KCG +  +  +F  +     + WN+II+ +  +G   +
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 418 ALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           ++  F +M+ +G +  + +T  ++L AC+HSG    G +  H    + G++ ++     +
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSI 404

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +D++ + G + MA      M  + +   W A++    +HG+
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREK-NVKSWSAMVAGYGMHGH 444


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/745 (38%), Positives = 439/745 (58%), Gaps = 44/745 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y      ++A D F + T  + + P+  TF  +LKAC N   L  G+KIH  V  +
Sbjct: 128 MIAAYAGNNHPAKAFDTFERMT-DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAM 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DV VA +L+ MY + G  +VA ++F  M  R+  SW A+I    Q     EA ++ 
Sbjct: 187 GMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELY 246

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M   G+S + +T  S+L  C   + +  G  IH +I + GLE ++ V+N LI MY K 
Sbjct: 247 EQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKC 306

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQS--NDPITAHGFFT---TMQQAGIQPDLLT 232
             ++ A  +FD+M +RDV+SW+++IA Y QS   D  +    F     M++ G+ P+ +T
Sbjct: 307 NSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVT 366

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME---------------------------- 264
            +S+             R +H  + + G+ ++                            
Sbjct: 367 FMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA 426

Query: 265 --DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +V+   + + MY K G ++SA  VF  +P ++V+SWN +I GYAQNG   + ++VF++
Sbjct: 427 NKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNG---DIVKVFEL 483

Query: 323 ME--ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           +   +     P++ T ++IL A   +  L +G  +HA  +K  L  D  VAT L+ MY K
Sbjct: 484 LSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSK 543

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG++ +A ++F ++    +V WNA+++ +G HG G +A++ F++ML E V P+ IT  ++
Sbjct: 544 CGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAV 603

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           ++ACS +GLV EG+  F MMQE+F + P  +HYGCMVDL GRAG L  A  FIQ+MP  P
Sbjct: 604 ISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEP 663

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
           D S+W ALLGAC+ H N++L   A+  + E++      Y+ +SNIYA  G+W+   +VR 
Sbjct: 664 DISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRR 723

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
           +  DRGLKK  G SSIE++ ++  F   +  HP+ + I+ EL  LT +MK  GY PD  F
Sbjct: 724 VMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRF 783

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           VL DV++ +KE  L  HSE+LAIA+G++ +P  +PI+I KNLRVCGDCH  TKFIS+I +
Sbjct: 784 VLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRK 843

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI+ RD+NRFH+F +G CSCGD+W
Sbjct: 844 REIVARDANRFHYFNNGTCSCGDFW 868



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/549 (30%), Positives = 260/549 (47%), Gaps = 42/549 (7%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
           + GRL EA+          GL  +  T+  V++ C   R   DGK +H  + +LG E D+
Sbjct: 33  KAGRLREAIQ-LLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDI 91

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           ++  SL++ Y +F     A ++F  M +RD  +W++MI+ Y  + +  +A D  + M   
Sbjct: 92  YLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDA 151

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            +  + IT  SIL  C     +  G  IH  +   G+E ++ V+  LI MY+K G +  A
Sbjct: 152 NIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             VF +M ER+VVSW +II A  Q      A   +  M QAGI P+ +T VSL +     
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R +H  I  RG    D+I+ NA++ MY K   +  A  +F+ +  +DVISW+ +
Sbjct: 272 EALNRGRRIHSHISERG-LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 304 ITGYAQNGLA-SEAI-EVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           I GYAQ+G    E+I EVFQ++E      + PN+ T++SIL A +  GAL QG +IHA +
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRI-------------------------------DDAM 388
            K     D  + T + +MY KCG I                                 A 
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F ++P  + V WN +I+ +  +G   K       M  EG +PD +T +++L AC    
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            +  G +  H    + G++        ++ ++ + G +  A      M  R D   W A+
Sbjct: 511 GLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWNAM 568

Query: 509 LGACRIHGN 517
           L     HG+
Sbjct: 569 LAGYGQHGD 577



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/501 (28%), Positives = 256/501 (51%), Gaps = 25/501 (4%)

Query: 77  GLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           G A+  ++L  D P   SG   W       C++G   EA+ +L  ++  G+ ++  T   
Sbjct: 9   GFASTGKEL--DGPTSVSGGEVWR-----LCKAGRLREAIQLLGIIKQRGLLVNSNTYGC 61

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++  CA++     G ++H  + + G+E ++++ N+LIN Y+KF  +  A +VF +M  RD
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+W+S+IAAY  +N P  A   F  M  A I+P+ +T +S+       +     R +H 
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 255 FIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            +   G  ME DV +  A++ MY+K G I+ AC VF  +  ++V+SW  +I   AQ+   
Sbjct: 182 IVKAMG--METDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKL 239

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           +EA E+++ M +   I+PN  T+VS+L + +   AL +G +IH+ + +  L  D+ VA  
Sbjct: 240 NEAFELYEQMLQAG-ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANA 298

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK-----ALNFFRQMLDE 428
           L+ MY KC  + +A  +F ++ +   + W+A+I+ +   G  DK           +M  E
Sbjct: 299 LITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRRE 358

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           GV P+ +TF+S+L AC+  G + +G R  H    + G +        + +++ + G +  
Sbjct: 359 GVFPNKVTFMSILRACTAHGALEQG-RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYE 417

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENVGYYVLMSNIYA 547
           A      M  + +   W + L      G++     +++++F E+ + NV  + LM   YA
Sbjct: 418 AEQVFSKMANK-NVVAWTSFLSMYIKCGDLS----SAEKVFSEMPTRNVVSWNLMIAGYA 472

Query: 548 NVGKWEGVDEVRSLARDRGLK 568
             G    V E+ S  +  G +
Sbjct: 473 QNGDIVKVFELLSSMKAEGFQ 493


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/708 (40%), Positives = 430/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I+ Y + G + EA   F Q  +   + P   TF  VL AC +   L  GK+ H  V+K+
Sbjct: 133 IIAGYAQLGHVKEAFALFRQM-VDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKV 191

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D  +  +L+ MY + G  + AR++FD +  RD  ++N MI GY +SG+  +A  + 
Sbjct: 192 GFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLF 251

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+ EG   + I+  SIL  C+  + +  G  +H   +  GL  ++ V+  LI MY   
Sbjct: 252 YRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGC 311

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFD+M  RDVVSW  +I  Y ++++   A G F TMQ+ GIQPD +T + + 
Sbjct: 312 GSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHII 371

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A   D   +R +H  ++R G F  D+++  A+V MYAK G I  A  VF+ +  +DV
Sbjct: 372 NACASSADLSLAREIHSQVVRAG-FGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDV 430

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+ +I  Y +NG   EA E F +M+  N + P+  TY+++L A  H+GAL  G++I+ 
Sbjct: 431 VSWSAMIGAYVENGCGEEAFETFHLMKR-NNVEPDVVTYINLLNACGHLGALDLGMEIYT 489

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           + IK  L   + V   L++M  K G I+ A  +F  + +   V WN +I  + +HG   +
Sbjct: 490 QAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNARE 549

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F +ML E  RP+ +TFV +L+ACS +G V EG+R+F  + +  GI P ++ YGCMV
Sbjct: 550 ALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMV 609

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   I  MP++P++SIW  LL ACRI+GN+++   A++R    +  +  
Sbjct: 610 DLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGA 669

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV +S++YA  G WE V +VR +   RG++K  G + IEV  K+  F   +R+HP+  +
Sbjct: 670 VYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGE 729

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL  L   +K  GY+P    VL +V E EKE  ++ HSE+LAIA+G++S P  +PI+
Sbjct: 730 IYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIR 789

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IFKNLRVCGDCH+ +KFIS++T REII RD++RFHHFK+G+CSCGDYW
Sbjct: 790 IFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/505 (29%), Positives = 255/505 (50%), Gaps = 9/505 (1%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D  T+  + + C  L D   GK++   +++ G + +++   +L+ ++   G    AR+ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D +  +   +WNA+I+GY Q G+  EA  +  +M  E +    IT   +L  C+    + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G   H  ++K G   +  +   L++MY K G M  A +VFD + +RDV ++N +I  Y 
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S D   A   F  MQQ G +P+ ++ +S+    +        ++VH   M  G  ++DV
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG-LVDDV 298

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +  A++ MY   G I  A  VF+ + V+DV+SW  +I GYA+N    +A  +F  M+E 
Sbjct: 299 RVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE- 357

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I P++ TY+ I+ A +    L    +IH++V++     D+ V T LV MY KCG I D
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKD 417

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  + R   V W+A+I  +  +G G++A   F  M    V PD +T+++LL AC H
Sbjct: 418 ARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGH 477

Query: 447 SGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            G +  G   Y   ++ +  +  H+     ++++  + G +  A    +NM V+ D   W
Sbjct: 478 LGALDLGMEIYTQAIKAD--LVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTW 534

Query: 506 GALLGACRIHGNMELGAVASDRLFE 530
             ++G   +HGN        DR+ +
Sbjct: 535 NVMIGGYSLHGNAREALDLFDRMLK 559



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 11/425 (2%)

Query: 94  SGSWNAMISGYCQSG-------NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           +G W   +    QS          V A D+L  +      +D  T   +   C    +  
Sbjct: 19  AGRWCGFLQQPVQSARCRSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAG 78

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +  +I++ G + N++  N LI +++  G M  A + FD +  + VV+WN+IIA Y 
Sbjct: 79  LGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYA 138

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q      A   F  M    ++P ++T + +    +     +  +  H  +++ G F+ D 
Sbjct: 139 QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVG-FVSDF 197

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            IG A+V MY K G ++ A  VF+GL  +DV ++N +I GYA++G   +A ++F  M++ 
Sbjct: 198 RIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQ- 256

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
               PN+ +++SIL   S   AL  G  +HA+ +   L  DV VAT L+ MY  CG I+ 
Sbjct: 257 EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEG 316

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F ++     V W  +I  +  +   + A   F  M +EG++PD IT++ ++ AC+ 
Sbjct: 317 ARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACAS 376

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           S  +S   R  H      G    L     +V ++ + G +  A      M  R D   W 
Sbjct: 377 SADLSLA-REIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS-RRDVVSWS 434

Query: 507 ALLGA 511
           A++GA
Sbjct: 435 AMIGA 439


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/709 (40%), Positives = 449/709 (63%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y   G+  EA+  F +    +G+  + YT    L+AC +      G +IH ++LK 
Sbjct: 83  IISAYSLNGQCMEALGLFREMQ-KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKS 141

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DV+VA +L+ M+ RFG  + A ++FD++  +D+ +WN+MI+G+ Q+G   EAL   
Sbjct: 142 NQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFF 201

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             ++   +  D +++ SIL    R   +L+G  IH Y +K+ L+ NL + N LI+MY+K 
Sbjct: 202 CGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKC 261

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             + +A  VFD+M+ +D++SW ++IAAY Q+N    A      +Q  G+  D + + S  
Sbjct: 262 CCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTL 321

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L    +++ VHG+ ++RG  + D+++ N ++D+YA  G IN A  +FE +  KDV
Sbjct: 322 LACSGLRCLSHAKEVHGYTLKRG--LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDV 379

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I+ Y  NGLA+EA+ VF +M+E   + P+  T VSIL A + + AL +G +IH 
Sbjct: 380 VSWTSMISCYVHNGLANEALGVFYLMKE-TSVEPDSITLVSILSAAASLSALNKGKEIHG 438

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + +     +      LVDMY  CG +++A  +F      S V W  +I+ +G+HG+G  
Sbjct: 439 FIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKA 498

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F  M D+ + PDHITF++LL ACSHSGL++EG+R    M+ ++ ++P  +HY C+V
Sbjct: 499 AVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLV 558

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRA HL  A++F+++M + P A +W A LGACRIH N +LG +A+ +L ++D ++ G
Sbjct: 559 DLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPG 618

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN++A  G+W+ V+EVR   +  GLKK PG S IEV NKV  F   +++HP+  K
Sbjct: 619 SYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYK 678

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L  +T K+ K  GYVP    VL +V ++EK  +L  HSERLAIA+G++S+   +PI
Sbjct: 679 IYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPI 738

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVC DCH + K +S+  ERE+IVRD++RFHHF+DG+CSCGD+W
Sbjct: 739 RITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 163/511 (31%), Positives = 274/511 (53%), Gaps = 15/511 (2%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+  D +TFP VLKAC  + D   G +IH  ++K G++  VFVA SL+ MY +      A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 83  RKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           RKLFD M  R D  SWN++IS Y  +G  +EAL +  EM+  GV  +  T+ + L  C  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S     G+ IH  I+K     +++V+N L+ M+ +FG M +A R+FD++ E+D ++WNS+
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSM 184

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA + Q+     A  FF  +Q A ++PD ++L+S+ +   +L    N + +H + M+  W
Sbjct: 185 IAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKN-W 243

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ IGN ++DMY+K   +  A  VF+ +  KD+ISW T+I  YAQN   +EA+++ +
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            ++    ++ +     S L A S +  L    ++H   +K  L  D+ +   ++D+Y  C
Sbjct: 304 KVQT-KGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADC 361

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G I+ A  +F  +     V W ++ISC+  +G  ++AL  F  M +  V PD IT VS+L
Sbjct: 362 GNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSIL 421

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +A +    +++G+   H      G          +VD++   G L  A+     +  R  
Sbjct: 422 SAAASLSALNKGKE-IHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVF--ICTRSK 478

Query: 502 ASI-WGALLGACRIHGN----MELGAVASDR 527
           + + W  ++ A  +HG     +EL ++  D+
Sbjct: 479 SLVLWTTMINAYGMHGRGKAAVELFSIMEDQ 509



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 217/406 (53%), Gaps = 19/406 (4%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR+ GV  D  T   +L  C   ++I  G  IH  I+K G +  +FV+N+L++MYAK   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 180 MRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
           +  A ++FD+M ER DVVSWNSII+AY  +   + A G F  MQ+AG+  +  TL     
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTL----- 115

Query: 239 IVAQLNDCRNSR------SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            VA L  C +S        +H  I++    + DV + NA+V M+ + G ++ A  +F+ L
Sbjct: 116 -VAALQACEDSSFKKLGMEIHAAILKSNQVL-DVYVANALVAMHVRFGKMSYAARIFDEL 173

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             KD I+WN++I G+ QNGL +EA++ F  +++ N + P++ + +SIL A   +G L  G
Sbjct: 174 DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDAN-LKPDEVSLISILAASGRLGYLLNG 232

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IHA  +KN L  ++ +   L+DMY KC  +  A  +F ++     + W  +I+ +  +
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQN 292

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
               +AL   R++  +G+  D +   S L ACS    +S  +   H    + G+   L  
Sbjct: 293 NCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKE-VHGYTLKRGLSD-LMM 350

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
              ++D++   G++  A    +++  + D   W +++ +C +H  +
Sbjct: 351 QNMIIDVYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGL 394


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/715 (41%), Positives = 440/715 (61%), Gaps = 38/715 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  Y R     EA   F +  L  G+ PD +TF   L+ C   R+   GK++H  ++  
Sbjct: 146 MILAYARVDDYMEAWGIFDRM-LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 204

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ D FV  +L+ MY +        K+FD+M  R+  +WN++IS   Q G+  +AL + 
Sbjct: 205 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 264

Query: 118 DEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             M+   +G+  D  T  ++L +CA   N   G  IH ++++  +  N+ V   L++MY+
Sbjct: 265 LRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 324

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G + +A  +F++M ER+  SWNS+I  Y+Q+ +   A   F  MQ  GI+PD  +L S
Sbjct: 325 ECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSS 384

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S    L+D +  R +H FI+R     E+ I+   +VDMYAK G ++ A  V++    K
Sbjct: 385 MLSSCVSLSDSQKGRELHNFIVRNT-MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK 443

Query: 296 D--VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           D     WN+++ GYA  GL  E+   F  M E ++I  +  T V+I+             
Sbjct: 444 DRNTALWNSILAGYANKGLKKESFNHFLEMLE-SDIEYDVLTMVTIV------------- 489

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
                   N L  +    T LVDMY KCG I  A ++F  +   + V WNA+IS +  HG
Sbjct: 490 --------NLLVLE----TALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHG 537

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  + +M  +G+ P+ +TF+++L+ACSH+GLV EG R F  MQE++ I+   +HY
Sbjct: 538 CSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHY 597

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            CMVDL GRAG L  A  F++ MP+ P+ S WGALLGACR+H +M++G +A+ RLFE+D 
Sbjct: 598 TCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDP 657

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           +N G YV+MSNIYA  G+W+ V+++R + + +G+KK PG S IE+N+++ IF+ G++THP
Sbjct: 658 QNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHP 717

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQ---DVEEDEKEHILTSHSERLAIAFGIISS 650
           K E+IY+ LR+LT + K LGY+PD SF+LQ   D++E+E+E  L  HSERLA++ G+IS 
Sbjct: 718 KTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISL 777

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P KS I++FKNLR+CGDCH  TKFIS+IT R II RD+NRFHHF++G CSCGDYW
Sbjct: 778 PKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 156/536 (29%), Positives = 267/536 (49%), Gaps = 35/536 (6%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRDSGSWNAMISG 103
           GK IH  ++  G+  D ++   +L +Y R G  +    ARKLF++MP R+  +WN MI  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y +  + +EA  I D M   GV  D  T AS L VC    +   G  +H  ++  G + +
Sbjct: 150 YARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 209

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
            FV N LI+MYAK       L+VFD+M ER+ V+WNSII+A  Q      A   F  MQ+
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 269

Query: 224 A--GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           +  GIQPD  T  +L ++ A   +    R +H  ++R     +++I+   +V MY++ G 
Sbjct: 270 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN-ITKNIIVETELVHMYSECGR 328

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +N A  +F  +  ++  SWN++I GY QNG   EA+ +F+ M + N I P+  +  S+L 
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM-QLNGIKPDCFSLSSMLS 387

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SS 399
           +   +   ++G ++H  +++N +  +  +   LVDMY KCG +D A  ++ Q  +   ++
Sbjct: 388 SCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNT 447

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS----------LLTACSHSGL 449
             WN+I++ +   G   ++ N F +ML+  +  D +T V+          L+   S  G 
Sbjct: 448 ALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGA 507

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR---PDASIWG 506
           +++ +  F  M  +     ++  +  M+  + + G    A    + MP +   P+   + 
Sbjct: 508 ITKARTVFDNMNGK-----NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFL 562

Query: 507 ALLGACRIHGNMELG-----AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           A+L AC   G +E G     ++  D   E  +E   +Y  M ++    G+ E   E
Sbjct: 563 AILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE---HYTCMVDLLGRAGRLEDAKE 615



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 225/424 (53%), Gaps = 18/424 (4%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR---HA 183
           ++P+  +S++  C  S++   G  IH  ++ +G   + ++   ++ +YA+ G +    +A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            ++F++M ER++ +WN++I AY + +D + A G F  M + G+ PD  T  S   +   L
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + VH  ++  G F  D  +GNA++DMYAK     S   VF+ +  ++ ++WN++
Sbjct: 189 RSRDGGKQVHSKLIACG-FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 247

Query: 304 ITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           I+  AQ G  ++A+ +F  M+E  + I P+Q T+ ++L   ++     QG +IHA +I+ 
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 307

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            +  ++ V T LV MY +CGR++ A  +F ++   ++  WN++I  +  +G+  +AL  F
Sbjct: 308 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 367

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG----CMVD 478
           +QM   G++PD  +  S+L++C       +G R  H     F ++  ++  G     +VD
Sbjct: 368 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-RELH----NFIVRNTMEEEGILQVVLVD 422

Query: 479 LFGRAGHLGMAHN-FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           ++ + G +  A   + Q +    + ++W ++L     + N  L   + +   E+   ++ 
Sbjct: 423 MYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLEMLESDIE 479

Query: 538 YYVL 541
           Y VL
Sbjct: 480 YDVL 483


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/714 (40%), Positives = 445/714 (62%), Gaps = 13/714 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +I  Y   G   EA+D +Y+  L  G+ P+ +TFP VLKAC  L    +G++IHC + +L
Sbjct: 90  LIRAYAWNGPYEEAIDLYYKM-LGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRL 148

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC-QSGNAVEALDI 116
             E +V+V+ +L+  Y + G  + A+++FD M  RD  +WN+MISG+    G+  E   +
Sbjct: 149 RLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARL 208

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           L +M+   VS +  T+  +LP  A+ +++  G  IH + V+ G   ++ V   ++++Y K
Sbjct: 209 LVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGK 267

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
              + +A R+FD M + ++ V+W++++ AY   +    A   F  +        +L+ V+
Sbjct: 268 CQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVT 327

Query: 236 LTSIV---AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           L +++   A L D      +H + ++ G F+ D+++GN ++ MYAK GIIN A   F  +
Sbjct: 328 LATVIRVCANLTDLSTGTCLHCYAIKSG-FVLDLMVGNTLLSMYAKCGIINGAMRFFNEM 386

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            ++D +S+  +I+GY QNG + E + +F  M+  + INP + T  S+LPA +H+  L  G
Sbjct: 387 DLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ-LSGINPEKATLASVLPACAHLAGLHYG 445

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
              H   I      D  +   L+DMY KCG+ID A  +F ++ +   V WN +I  +GIH
Sbjct: 446 SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIH 505

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F  M  EG++PD +TF+ L++ACSHSGLV+EG+ +F+ M ++FGI P ++H
Sbjct: 506 GIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEH 565

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y CMVDL  RAG     H+FI+ MP+ PD  +WGALL ACR++ N+ELG   S ++ ++ 
Sbjct: 566 YACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG 625

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN-RT 591
            E+ G +VL+SN+Y+ VG+W+   +VR   +++G +K+PG S IE++  V  F  G  R+
Sbjct: 626 PESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRS 685

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+  +I ++L  L  +MK LGY  + S+V QDVEE+EKE +L  HSE+LAIAFGI+S  
Sbjct: 686 HPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLS 745

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P   I + KNLRVCGDCH   KFIS +T+R+I VRD++RFHHFKDGIC+CGD+W
Sbjct: 746 PDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/504 (28%), Positives = 244/504 (48%), Gaps = 36/504 (7%)

Query: 37  VLKAC---RNLVDGKKIHCSVLK--------------LGFEW--DVFVAASLLHMYCRFG 77
           +L++C   ++L  GK IH  +LK              + FE   D+++A S L       
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSEL------- 67

Query: 78  LANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
              +AR +FD MP R      WN +I  Y  +G   EA+D+  +M   G++ +  T   +
Sbjct: 68  --KIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFV 125

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  C+       G  IH  I +  LE N++VS  L++ YAK G +  A  VFD+M +RDV
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDV 185

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           V+WNS+I+ +                 Q  + P+  T+V +   VAQ+N  R+ + +HGF
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF 245

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLAS 314
            +RRG F+ DV++G  ++D+Y K   I+ A  +F+ +  VK+ ++W+ ++  Y       
Sbjct: 246 CVRRG-FVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMR 304

Query: 315 EAIEVF--QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           EA+E+F   +M + + I  +  T  +++   +++  L  G  +H   IK+    D+ V  
Sbjct: 305 EALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGN 364

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+ MY KCG I+ AM  F ++    +V + AIIS +  +G  ++ L  F +M   G+ P
Sbjct: 365 TLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINP 424

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           +  T  S+L AC+H   +  G    H      G          ++D++ + G +  A   
Sbjct: 425 EKATLASVLPACAHLAGLHYGS-CSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKV 483

Query: 493 IQNMPVRPDASIWGALLGACRIHG 516
              M  R   S W  ++ A  IHG
Sbjct: 484 FDRMHKRGIVS-WNTMIIAYGIHG 506


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/708 (40%), Positives = 429/708 (60%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  + +   L +A+  F +      + P  Y F  +LK C +  +   GK+IH  ++K 
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+F    L +MY +    N ARK+FD MP RD  SWN +++GY Q+G A  AL+++
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  E +    IT+ S+LP  +    I  G  IH Y ++ G +  + +S  L++MYAK 
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC 284

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++FD M+ER+VVSWNS+I AY Q+ +P  A   F  M   G++P  ++++   
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L D    R +H   +  G    +V + N+++ MY K   +++A ++F  L  + +
Sbjct: 345 HACADLGDLERGRFIHKLSVELG-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I G+AQNG   +A+  F  M     + P+  TYVS++ A + +        IH 
Sbjct: 404 VSWNAMILGFAQNGRPIDALNYFSQMRS-RTVKPDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V+++CL  +VFV T LVDMY KCG I  A  +F  +       WNA+I  +G HG G  
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M    ++P+ +TF+S+++ACSHSGLV  G + F+MM+E + I+  + HYG MV
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A +FI  MPV+P  +++GA+LGAC+IH N+     A++RLFE++ ++ G
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGG 642

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL++NIY     WE V +VR     +GL+KTPG S +E+ N+V  F++G+  HP  +K
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKK 702

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L   +K  GYVPD + VL  VE D KE +L++HSE+LAI+FG++++   + I 
Sbjct: 703 IYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIH 761

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCHN TK+IS +T REI+VRD  RFHHFK+G CSCGDYW
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/489 (30%), Positives = 252/489 (51%), Gaps = 6/489 (1%)

Query: 30  DFYTFPP--VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           + Y  P   +L+ C +L + ++I   V K G   + F    L+ ++CR+G  + A ++F+
Sbjct: 34  NVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFE 93

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            +  + +  ++ M+ G+ +  +  +AL     MR + V         +L VC     +  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH  +VK G   +LF    L NMYAK   +  A +VFD+M ERD+VSWN+I+A Y Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A     +M +  ++P  +T+VS+   V+ L      + +HG+ MR G F   V 
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG-FDSLVN 272

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           I  A+VDMYAK G + +A  +F+G+  ++V+SWN++I  Y QN    EA+ +FQ M +  
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD-E 331

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + P   + +  L A + +G L +G  IH   ++  L  +V V   L+ MY KC  +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            S+F ++   + V WNA+I     +G+   ALN+F QM    V+PD  T+VS++TA +  
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             ++   ++ H +     +  ++     +VD++ + G + +A   I +M      + W A
Sbjct: 452 S-ITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNA 509

Query: 508 LLGACRIHG 516
           ++     HG
Sbjct: 510 MIDGYGTHG 518


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/699 (40%), Positives = 422/699 (60%), Gaps = 7/699 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAA 67
           L  A+  F   +  SG  P   TF  +LK C    +L  G+ +H  +   G   +   A 
Sbjct: 205 LRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAAT 264

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVS 126
           +L +MY +      AR++FD MP RD  +WNA+++GY ++G A  A+ ++  M+ E G  
Sbjct: 265 ALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGER 324

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D +T+ S+LP CA +  + +   +H + V+ G +  + VS  ++++Y K G +  A +V
Sbjct: 325 PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKV 384

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD M +R+ VSWN++I  Y ++ D   A   F  M   G+    +++++      +L   
Sbjct: 385 FDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFL 444

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              R VH  ++R G    +V + NA++ MY K    + A  VF+ L  K  +SWN +I G
Sbjct: 445 DEGRRVHELLVRIG-LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILG 503

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
             QNG + +A+ +F  M+  N + P+  T VSI+PA + +    Q   IH   I+  L  
Sbjct: 504 CTQNGSSEDAVRLFSRMQLEN-VKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQ 562

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV+V T L+DMY KCGR+  A SLF        + WNA+I  +G HG G  A+  F +M 
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMK 622

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G  P+  TF+S+L+ACSH+GLV EGQ YF  M+E++G++P ++HYG MVDL GRAG L
Sbjct: 623 SSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKL 682

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A +FIQ MP+ P  S++GA+LGAC++H N+EL   ++ R+FE++ E   Y+VL++NIY
Sbjct: 683 HEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIY 742

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           AN   W+ V  VR+    +GL+KTPGWS +++ N++  FY+G+  H + + IY  L  L 
Sbjct: 743 ANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLI 802

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K++GYVPD   +  DVE+D K  +L +HSE+LAIA+G+I + P + IQI KNLRVC 
Sbjct: 803 EEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCK 861

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCHN TK IS +T REII+RD  RFHHFKDG CSCGDYW
Sbjct: 862 DCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 235/439 (53%), Gaps = 11/439 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +++ Y R G    AV    +     G RPD  T   VL AC +   L   +++H   ++ 
Sbjct: 297 LVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRG 356

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+  V V+ ++L +YC+ G  + ARK+FD M  R+S SWNAMI GY ++G+A EAL + 
Sbjct: 357 GFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALF 416

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EGV +  ++V + L  C     +  G  +H  +V+ GLE N+ V N LI MY K 
Sbjct: 417 KRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKC 476

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                A +VFD++  +  VSWN++I    Q+     A   F+ MQ   ++PD  TLVS+ 
Sbjct: 477 KRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSII 536

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             +A ++D   +R +HG+ +R     +DV +  A++DMYAK G ++ A ++F     + V
Sbjct: 537 PALADISDPLQARWIHGYSIRL-HLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHV 595

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +I GY  +G    A+E+F+ M+   ++ PN+ T++S+L A SH G + +G +  +
Sbjct: 596 ITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV-PNETTFLSVLSACSHAGLVDEGQEYFS 654

Query: 358 RVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQ- 414
            + ++  L   +     +VD+ G+ G++ +A S   ++P    +  + A++    +H   
Sbjct: 655 SMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNV 714

Query: 415 ---GDKALNFFRQMLDEGV 430
               + A   F    +EGV
Sbjct: 715 ELAEESAQRIFELEPEEGV 733


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/708 (40%), Positives = 419/708 (59%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y   G   EA + F        L PD +TF  +L AC +   L  G++IH  V++ 
Sbjct: 100 MISGYAHRGLAQEAFNLF-TLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEA 158

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  V  +L+ MY + G    AR++FD M  RD  SW  +   Y +SG   E+L   
Sbjct: 159 GLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTY 218

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  E V    IT  ++L  C     +  G  IH +IV+     ++ VS  L  MY K 
Sbjct: 219 HAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC 278

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  + A  VF+ +  RDV++WN++I  +  S     AHG F  M + G+ PD  T  ++ 
Sbjct: 279 GAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVL 338

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A+       + +H    + G  + DV  GNA+++MY+K G +  A  VF+ +P +DV
Sbjct: 339 SACARPGGLARGKEIHARAAKDG-LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 397

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW TL+  YA      E+   F+ M +   +  N+ TY+ +L A S+  AL+ G +IHA
Sbjct: 398 VSWTTLLGRYADCDQVVESFTTFKQMLQ-QGVKANKITYMCVLKACSNPVALKWGKEIHA 456

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V+K  L  D+ V   L+ MY KCG ++DA+ +F  +     V WN +I   G +G+G +
Sbjct: 457 EVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLE 516

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  +  M  EG+RP+  TFV++L+AC    LV EG+R F  M +++GI P  KHY CMV
Sbjct: 517 ALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMV 576

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+  RAGHL  A + I  +P++P A++WGALL ACRIH N+E+G  A++   +++ +N G
Sbjct: 577 DILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAG 636

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV +S IYA  G W  V ++R   ++RG+KK PG S IE+  +V  F   +++HP+ ++
Sbjct: 637 LYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQE 696

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY EL  L  +MKSLGYVPD  FV+ D++++ KE  +  HSE+LAIA+G+IS+PP +PI+
Sbjct: 697 IYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIR 756

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCH  TKFIS+IT+REII RD++RFHHFK+G CSCGDYW
Sbjct: 757 ISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 255/494 (51%), Gaps = 7/494 (1%)

Query: 20  QFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           Q+    G + D Y +  +L++C   ++L  GK++H  +L+ G + +V++  +LL +Y   
Sbjct: 17  QYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHC 76

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  N AR+LFD    +   SWN MISGY   G A EA ++   M+ E +  D  T  SIL
Sbjct: 77  GSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSIL 136

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C+    +  G  IH+ +++ GL  +  V N LI+MYAK G +R A RVFD M  RD V
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV 196

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW ++  AY +S     +   +  M Q  ++P  +T +++ S    L      + +H  I
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +    +  DV +  A+  MY K G    A  VFE L  +DVI+WNT+I G+  +G   EA
Sbjct: 257 V-ESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
              F  M E   + P++ TY ++L A +  G L +G +IHAR  K+ L  DV     L++
Sbjct: 316 HGTFHRMLE-EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALIN 374

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY K G + DA  +F ++P+   V W  ++  +    Q  ++   F+QML +GV+ + IT
Sbjct: 375 MYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKIT 434

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           ++ +L ACS+   +  G+   H    + G+   L     ++ ++ + G +  A    + M
Sbjct: 435 YMCVLKACSNPVALKWGKE-IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493

Query: 497 PVRPDASIWGALLG 510
            +R D   W  L+G
Sbjct: 494 SMR-DVVTWNTLIG 506



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 211/396 (53%), Gaps = 4/396 (1%)

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D+L  +  +G  +D      +L  C ++ ++  G  +H +I++ G++ N++++N L+ +Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           A  G +  A ++FD+   + VVSWN +I+ Y        A   FT MQQ  ++PD  T V
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+ S  +        R +H  +M  G    D  +GNA++ MYAK G +  A  VF+ +  
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEAG-LANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +D +SW TL   YA++G   E+++ +  M +   + P++ TY+++L A   + AL +G +
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQ-ERVRPSRITYMNVLSACGSLAALEKGKQ 251

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IHA ++++    DV V+T L  MY KCG   DA  +F  +     + WN +I      GQ
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQ 311

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            ++A   F +ML+EGV PD  T+ ++L+AC+  G ++ G+   H    + G+   ++   
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE-IHARAAKDGLVSDVRFGN 370

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +++++ +AG +  A      MP R D   W  LLG
Sbjct: 371 ALINMYSKAGSMKDARQVFDRMPKR-DVVSWTTLLG 405


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/694 (42%), Positives = 425/694 (61%), Gaps = 2/694 (0%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH 71
           S AV  +     ++ L PD +T+  V+    +L  G  +H   +  GF  D+FV ++++ 
Sbjct: 90  SSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVA 149

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
            Y +F     ARK+FD M  RD+  WN M+SG  ++    EA+ I  +M   G+  D  T
Sbjct: 150 CYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTT 209

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           VA++LP  A   ++  G+ I    +K G   + +V   L  +Y+K G +  A  +F Q+ 
Sbjct: 210 VAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIG 269

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           + D+VS+N++I+ Y  +N+  ++   F  +  +G + +  ++V L  +         +R 
Sbjct: 270 QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRC 329

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HGF  + G      +   A+  +Y++L  I SA  +F+    K + SWN +I+GYAQNG
Sbjct: 330 IHGFCTKSGVVSNSSVS-TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNG 388

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           L  +AI +FQ M++C E+ PN  T  SIL A + +GAL  G  +H  + +     ++FV+
Sbjct: 389 LTEKAISLFQEMQKC-EVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVS 447

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T L+DMY KCG I +A  LF  +P  ++V WNA+IS +G+HG G +ALN F +ML   V 
Sbjct: 448 TALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVS 507

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P  +TF+S+L ACSH+GLV EG   F  M  + G +P  +HY CMVDL GRAG+L  A +
Sbjct: 508 PTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALD 567

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI+ MPV P   +WGALLGAC IH +  L  +ASD+LFE+D +NVGYYVL+SNIY+    
Sbjct: 568 FIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQN 627

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +     VR + + R L KTPG + IEV N + IF +G+++HP+   IY  L  LT KM+ 
Sbjct: 628 YPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMRE 687

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            G+  +    L DVEE+EKE ++  HSE+LAIAFG+I+S P + I+I KNLRVC DCHN 
Sbjct: 688 AGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNA 747

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           TKFIS+ITER I+VRD+NRFHHFKDGICSCGDYW
Sbjct: 748 TKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/708 (41%), Positives = 428/708 (60%), Gaps = 5/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           +++   + G  S ++  F +  ++SG+  D YTF  V K+    R++  G+++H  +LK 
Sbjct: 166 LMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKS 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  SL+  Y +    + ARK+FD+M  RD  SWN++I+GY  +G A + L + 
Sbjct: 225 GFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G+ +D  T+ S+   CA S  I  G  +H + VK          N L++MY+K 
Sbjct: 285 VQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M  R VVS+ S+IA Y +      A   F  M++ GI PD+ T+ ++ 
Sbjct: 345 GDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A+       + VH +I        D+ + NA++DMYAK G +  A  VF  + VKD+
Sbjct: 405 NCCARNRLLDEGKRVHEWIKENDMGF-DIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWNT+I GY++N  A+EA+ +F ++      +P++ T   +LPA + + A  +G +IH 
Sbjct: 464 ISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++N    D  VA  LVDMY KCG +  A  LF  +     V W  +I+ +G+HG G +
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKE 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F QM   G+ PD I+FVSLL ACSHSGLV EG R+F++M+ E  I+P ++HY C+V
Sbjct: 584 AIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+  R G+L  A+ FI+NMP+ PDA+IWGALL  CRIH +++L    ++++FE++ EN G
Sbjct: 644 DMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTG 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVLM+NIYA   KWE V  +R     RGL+K PG S IE+  +V+IF  G+ ++P+ EK
Sbjct: 704 YYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEK 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   LR + A+M   GY P   + L D EE EKE  L  HSE+LA+A GIISS     I+
Sbjct: 764 IEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIR 823

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCH   KF+S++T REI++RDSNRFH FKDG CSC  +W
Sbjct: 824 VTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/492 (29%), Positives = 255/492 (51%), Gaps = 10/492 (2%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D  T   VL+ C   ++L DGK++   +   GF  D  + + L  MY   G    A ++F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D + +  +  WN +++   +SG+   ++ +  +M   GV MD  T + +    +   ++ 
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H YI+K G      V N+L+  Y K   +  A +VFD+M ERDV+SWNSII  Y 
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            +         F  M  +GI+ DL T+VS+ +  A        R+VH F ++  +  ED 
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
              N ++DMY+K G ++SA  VF  +  + V+S+ ++I GYA+ GLA EA+++F+ MEE 
Sbjct: 333 FC-NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE- 390

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I+P+  T  ++L   +    L +G ++H  + +N + FD+FV+  L+DMY KCG + +
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMRE 450

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVRPDHITFVSLLTACS 445
           A  +F ++     + WN +I  +  +   ++AL+ F  +L ++   PD  T   +L AC+
Sbjct: 451 AELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510

Query: 446 HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
                 +G+  + ++M+  +    H+ +   +VD++ + G L +A     ++  + D   
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLARLLFDDITSK-DLVS 567

Query: 505 WGALLGACRIHG 516
           W  ++    +HG
Sbjct: 568 WTVMIAGYGMHG 579



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 214/427 (50%), Gaps = 15/427 (3%)

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSDNIL 146
           D  V D+   N  +  +C+SGN   A+ +L    + G   +DP T+ S+L +CA S ++ 
Sbjct: 58  DRSVTDA---NTQLRRFCESGNLKNAVKLL---HVSGKWDIDPRTLCSVLQLCADSKSLK 111

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +  +I  +G   +  + + L  MY   G ++ A RVFDQ+     + WN ++    
Sbjct: 112 DGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELA 171

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S D   + G F  M  +G++ D  T   ++   + L        +HG+I++ G F E  
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSG-FGERN 230

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEE 325
            +GN++V  Y K   ++SA  VF+ +  +DVISWN++I GY  NGLA + + VF QM+  
Sbjct: 231 SVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFS 290

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             EI+    T VS+    +    +  G  +H   +K C   +      L+DMY KCG +D
Sbjct: 291 GIEIDL--ATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLD 348

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A  +F ++   S V + ++I+ +   G   +A+  F +M +EG+ PD  T  ++L  C+
Sbjct: 349 SAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408

Query: 446 HSGLVSEGQRYFHMMQE-EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
            + L+ EG+R    ++E + G    + +   ++D++ + G +  A      M V+ D   
Sbjct: 409 RNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVK-DIIS 465

Query: 505 WGALLGA 511
           W  ++G 
Sbjct: 466 WNTVIGG 472


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/685 (41%), Positives = 423/685 (61%), Gaps = 7/685 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           + LRPD +T+   + A   L D   G  +H   +  G   ++FV ++++ +Y +F  A +
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           ARK+FD MP RD+  WN MISG+ ++    +++ +  +M   G+S D  T+A++L   A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
                 G+ I     K GL  +++V   LI++Y+K G       +FDQ+ + D++S+N++
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y  +++  +A   F  +  +G + +  TLV L  +    N  + SR +    ++ G 
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            ++  +   A+  +Y +L  +  A  +F+  P K + SWN +I+GY QNGL   AI +FQ
Sbjct: 347 ILQPSV-STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQ 405

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M    +++PN  T  SIL A + +GAL  G  +H  +    L  +V+V+T LVDMY KC
Sbjct: 406 EM--MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G I +A  LF  +   + V WNA+I+ +G+HG G +AL  F +ML  G+ P  +TF+S+L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGLVSEG   FH M   +G +P  +HY CMVD+ GRAG L  A  FI+ MP+ P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            ++WGALLGAC IH N E+  VAS RLF++D ENVGYYVL+SNIY+    +     VR +
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK-SF 620
            + R L KTPG + IE++++  +F +G+R+HP+   I++ L  LT KM+  GY  +  + 
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L DVE++EKE ++  HSE+LAIAFG+IS+ P + I+I KNLRVC DCH  TKFIS+ITE
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           R I+VRD+NRFHHFK+GICSCGDYW
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 239/497 (48%), Gaps = 7/497 (1%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           T TS +R   + F  +L     L    +I   ++  G  +D+     L H +   G    
Sbjct: 6   TATSAIRGQRF-FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAH 64

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCA 140
            R+LF+ +   D   +N +I G+  +G    ++ +   +R +  +  D  T A  +   +
Sbjct: 65  VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAAS 124

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           R ++   G+L+H + +  G+  NLFV + ++++Y KF     A +VFD M ERD V WN+
Sbjct: 125 RLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNT 184

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I+ + +++    +   F  M   G+  D  TL ++ + VA+L + R    +     ++G
Sbjct: 185 MISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG 244

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
               DV +   ++ +Y+K G       +F+ +   D+IS+N +I+GY  N     A+ +F
Sbjct: 245 -LHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + +    +   N  T V ++P Y     L+    I    +K  +     V+T L  +Y +
Sbjct: 304 RELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
              +  A  LF + P  S   WNA+IS +  +G  D+A++ F++M+ + + P+ +T  S+
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L+AC+  G +S G ++ H + +   ++ ++     +VD++ + G +  A      M V  
Sbjct: 422 LSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDK 479

Query: 501 DASIWGALLGACRIHGN 517
           +   W A++    +HG+
Sbjct: 480 NVVTWNAMITGYGLHGH 496


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/685 (41%), Positives = 423/685 (61%), Gaps = 7/685 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           + LRPD +T+   + A   L D   G  +H   +  G   ++FV ++++ +Y +F  A +
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           ARK+FD MP RD+  WN MISG+ ++    +++ +  +M   G+S D  T+A++L   A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
                 G+ I     K GL  +++V   LI++Y+K G       +FDQ+ + D++S+N++
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y  +++  +A   F  +  +G + +  TLV L  +    N  + SR +    ++ G 
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            ++  +   A+  +Y +L  +  A  +F+  P K + SWN +I+GY QNGL   AI +FQ
Sbjct: 347 ILQPSV-STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQ 405

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M    +++PN  T  SIL A + +GAL  G  +H  +    L  +V+V+T LVDMY KC
Sbjct: 406 EM--MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G I +A  LF  +   + V WNA+I+ +G+HG G +AL  F +ML  G+ P  +TF+S+L
Sbjct: 464 GSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSIL 523

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGLVSEG   FH M   +G +P  +HY CMVD+ GRAG L  A  FI+ MP+ P 
Sbjct: 524 YACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPG 583

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            ++WGALLGAC IH N E+  VAS RLF++D ENVGYYVL+SNIY+    +     VR +
Sbjct: 584 PAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQV 643

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK-SF 620
            + R L KTPG + IE++++  +F +G+R+HP+   I++ L  LT KM+  GY  +  + 
Sbjct: 644 VKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTT 703

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L DVE++EKE ++  HSE+LAIAFG+IS+ P + I+I KNLRVC DCH  TKFIS+ITE
Sbjct: 704 ALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITE 763

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           R I+VRD+NRFHHFK+GICSCGDYW
Sbjct: 764 RVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 238/497 (47%), Gaps = 7/497 (1%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           T TS +R   + F  +L     L    +I   ++  G  +D+     L H +   G    
Sbjct: 6   TATSAIRGQRF-FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAH 64

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVASILPVCA 140
            R+LF+ +   D   +N +I G+  +G    ++ +   +R    +  D  T A  +   +
Sbjct: 65  VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAAS 124

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           R ++   G+L+H + +  G+  NLFV + ++++Y KF     A +VFD M ERD V WN+
Sbjct: 125 RLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNT 184

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I+ + +++    +   F  M   G+  D  TL ++ + VA+L + R    +     ++G
Sbjct: 185 MISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG 244

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
               DV +   ++ +Y+K G       +F+ +   D+IS+N +I+GY  N     A+ +F
Sbjct: 245 -LHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + +    +   N  T V ++P Y     L+    I    +K  +     V+T L  +Y +
Sbjct: 304 RELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
              +  A  LF + P  S   WNA+IS +  +G  D+A++ F++M+ + + P+ +T  S+
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L+AC+  G +S G ++ H + +   ++ ++     +VD++ + G +  A      M V  
Sbjct: 422 LSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDK 479

Query: 501 DASIWGALLGACRIHGN 517
           +   W A++    +HG+
Sbjct: 480 NVVTWNAMITGYGLHGH 496


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/744 (39%), Positives = 432/744 (58%), Gaps = 42/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y      ++A D F +    + + P+  TF  +LKAC N   L   ++IH  V   
Sbjct: 150 MIAAYAGNNHPAKAFDTFERMK-DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKAS 208

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DV VA +L+ MY + G  ++A ++F  M  R+  SW A+I    Q     EA ++ 
Sbjct: 209 GMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELY 268

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M   G+S + +T  S+L  C   + +  G  IH +I + GLE ++ V+N LI MY K 
Sbjct: 269 EKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC 328

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQS--NDPITAHGFFT---TMQQAGIQPDLLT 232
             ++ A   FD+M +RDV+SW+++IA Y QS   D  +    F     M++ G+ P+ +T
Sbjct: 329 NCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVT 388

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII---------- 282
            +S+    +        R +H  I + G F  D  +  A+ +MYAK G I          
Sbjct: 389 FMSILKACSVHGALEQGRQIHAEISKVG-FESDRSLQTAIFNMYAKCGSIYEAEQVFSKM 447

Query: 283 ---------------------NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
                                 SA  VF  +  ++V+SWN +I GYAQ+G  ++  E+  
Sbjct: 448 ENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLS 507

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+      P++ T +SIL A   + AL +G  +HA  +K  L  D  VAT L+ MY KC
Sbjct: 508 SMK-VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 566

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G + +A ++F ++    +V WNA+++ +G HG G +A++ F++ML E V P+ ITF +++
Sbjct: 567 GEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVI 626

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +AC  +GLV EG+  F +MQE+F +KP  +HYGCMVDL GRAG L  A  FIQ MP  PD
Sbjct: 627 SACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPD 686

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            S+W ALLGAC+ H N++L   A+  +  ++  N   YV +SNIYA  G+W+   +VR +
Sbjct: 687 ISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKV 746

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
             D+GLKK  G SSIE++ ++  F   +  HP+ + I+ EL  LT +MK  GY PD  FV
Sbjct: 747 MDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFV 806

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DV+E +KE  L  HSE+LAIA+G++ +PP +PI+I KNLRVCGDCH  TKFIS+I +R
Sbjct: 807 LHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKR 866

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI+ RD+NRFH+FK+G CSCGD+W
Sbjct: 867 EIVARDANRFHYFKNGTCSCGDFW 890



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 256/548 (46%), Gaps = 42/548 (7%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
           + GRL EA+          GL  +  T+  +++ C   R   DGK +H  + +LG   D+
Sbjct: 55  KAGRLKEAIQ-LLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDI 113

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           ++  SL++ Y +FG      ++F  M +RD  +W++MI+ Y  + +  +A D  + M+  
Sbjct: 114 YLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDA 173

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            +  + IT  SIL  C     +     IH  +   G+E ++ V+  LI MY+K G +  A
Sbjct: 174 NIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             +F +M ER+VVSW +II A  Q      A   +  M QAGI P+ +T VSL +     
Sbjct: 234 CEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R +H  I  RG    DV++ NA++ MY K   I  A   F+ +  +DVISW+ +
Sbjct: 294 EALNRGRRIHSHISERG-LETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 304 ITGYAQNGLASEAI--EVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           I GYAQ+G   +    EVFQ++E      + PN+ T++SIL A S  GAL QG +IHA +
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH---------- 409
            K     D  + T + +MY KCG I +A  +F ++   + V W ++++ +          
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 410 -------------------GIHGQGD--KALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
                              G    GD  K       M  EG +PD +T +S+L AC    
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            +  G +  H    + G++        ++ ++ + G +  A      +  R D   W A+
Sbjct: 533 ALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR-DTVAWNAM 590

Query: 509 LGACRIHG 516
           L     HG
Sbjct: 591 LAGYGQHG 598



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 253/499 (50%), Gaps = 21/499 (4%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G A+   +L     V     W       C++G   EA+ +L  ++  G+ ++  T   I+
Sbjct: 31  GFASTGEELAGPRSVSGGEVWR-----LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCII 85

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             CA+      G ++H  + + GL  ++++ N+LIN Y+KFG +    +VF +M  RDVV
Sbjct: 86  EHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVV 145

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +W+S+IAAY  +N P  A   F  M+ A I+P+ +T +S+       +    +R +H  +
Sbjct: 146 TWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVV 205

Query: 257 MRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
              G  ME DV +  A++ MY+K G I+ AC +F+ +  ++V+SW  +I   AQ+   +E
Sbjct: 206 KASG--METDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A E+++ M +   I+PN  T+VS+L + +   AL +G +IH+ + +  L  DV VA  L+
Sbjct: 264 AFELYEKMLQAG-ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALI 322

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK-----ALNFFRQMLDEGV 430
            MY KC  I DA   F ++ +   + W+A+I+ +   G  DK           +M  EGV
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            P+ +TF+S+L ACS  G + +G R  H    + G +        + +++ + G +  A 
Sbjct: 383 FPNKVTFMSILKACSVHGALEQG-RQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAE 441

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENVGYYVLMSNIYANV 549
                M  + +   W +LL      G++     +++++F E+ + NV  + LM   YA  
Sbjct: 442 QVFSKMENK-NVVAWASLLTMYIKCGDL----TSAEKVFSEMSTRNVVSWNLMIAGYAQS 496

Query: 550 GKWEGVDEVRSLARDRGLK 568
           G    V E+ S  +  G +
Sbjct: 497 GDIAKVFELLSSMKVEGFQ 515


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/708 (41%), Positives = 427/708 (60%), Gaps = 5/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           +++   + G  S ++  F +  ++SG+  D YTF  V K+    R++  G+++H  +LK 
Sbjct: 166 LMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKS 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  SL+  Y +    + ARK+FD+M  RD  SWN++I+GY  +G A + L + 
Sbjct: 225 GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M + G+ +D  T+ S+   CA S  I  G  +H   VK          N L++MY+K 
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M +R VVS+ S+IA Y +      A   F  M++ GI PD+ T+ ++ 
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A+       + VH +I        D+ + NA++DMYAK G +  A  VF  + VKD+
Sbjct: 405 NCCARYRLLDEGKRVHEWIKENDLGF-DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWNT+I GY++N  A+EA+ +F ++ E    +P++ T   +LPA + + A  +G +IH 
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++N    D  VA  LVDMY KCG +  A  LF  +     V W  +I+ +G+HG G +
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F QM   G+  D I+FVSLL ACSHSGLV EG R+F++M+ E  I+P ++HY C+V
Sbjct: 584 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+  R G L  A+ FI+NMP+ PDA+IWGALL  CRIH +++L    ++++FE++ EN G
Sbjct: 644 DMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTG 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVLM+NIYA   KWE V  +R     RGL+K PG S IE+  +V+IF  G+ ++P+ E 
Sbjct: 704 YYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEN 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   LR + A+M   GY P   + L D EE EKE  L  HSE+LA+A GIISS     I+
Sbjct: 764 IEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIR 823

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCH   KF+S++T REI++RDSNRFH FKDG CSC  +W
Sbjct: 824 VTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 257/492 (52%), Gaps = 10/492 (2%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D  T   VL+ C   ++L DGK++   +   GF  D  + + L  MY   G    A ++F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D++ +  +  WN +++   +SG+   ++ +  +M   GV MD  T + +    +   ++ 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H +I+K G      V N+L+  Y K   +  A +VFD+M ERDV+SWNSII  Y 
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            +         F  M  +GI+ DL T+VS+ +  A        R+VH   ++  +  ED 
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
              N ++DMY+K G ++SA AVF  +  + V+S+ ++I GYA+ GLA EA+++F+ MEE 
Sbjct: 333 FC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE- 390

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I+P+  T  ++L   +    L +G ++H  + +N L FD+FV+  L+DMY KCG + +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 450

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACS 445
           A  +F ++     + WN II  +  +   ++AL+ F  +L+E    PD  T   +L AC+
Sbjct: 451 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510

Query: 446 HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
                 +G+  + ++M+  +    H+ +   +VD++ + G L +AH    ++  + D   
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASK-DLVS 567

Query: 505 WGALLGACRIHG 516
           W  ++    +HG
Sbjct: 568 WTVMIAGYGMHG 579



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 215/427 (50%), Gaps = 15/427 (3%)

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSDNIL 146
           D  V D+   N  +  +C+SGN   A+ +L    + G   +DP T+ S+L +CA S ++ 
Sbjct: 58  DRSVTDA---NTQLRRFCESGNLENAVKLLC---VSGKWDIDPRTLCSVLQLCADSKSLK 111

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +  +I  +G   +  + + L  MY   G ++ A RVFD++     + WN ++    
Sbjct: 112 DGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELA 171

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S D   + G F  M  +G++ D  T   ++   + L        +HGFI++ G F E  
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSG-FGERN 230

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEE 325
            +GN++V  Y K   ++SA  VF+ +  +DVISWN++I GY  NGLA + + VF QM+  
Sbjct: 231 SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS 290

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             EI+    T VS+    +    +  G  +H+  +K C   +      L+DMY KCG +D
Sbjct: 291 GIEIDL--ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLD 348

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A ++F ++   S V + ++I+ +   G   +A+  F +M +EG+ PD  T  ++L  C+
Sbjct: 349 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 408

Query: 446 HSGLVSEGQRYFHMMQE-EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
              L+ EG+R    ++E + G    + +   ++D++ + G +  A      M V+ D   
Sbjct: 409 RYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIIS 465

Query: 505 WGALLGA 511
           W  ++G 
Sbjct: 466 WNTIIGG 472


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/708 (40%), Positives = 425/708 (60%), Gaps = 33/708 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           + S YV+     EAV  FY+  L SG++P+ ++   ++ AC  L D   GK IH  ++KL
Sbjct: 229 LFSCYVQXDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++WD F A +L+ MY + G    A  +F+ +   D  SWNA+I+G     +  +AL++L
Sbjct: 288 GYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ +                           +H  ++K  +E +LFVS  L++MY+K 
Sbjct: 348 GQMKRQ---------------------------LHSSLMKMDMESDLFVSVGLVDMYSKC 380

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            ++  A   F+ + E+D+++WN+II+ Y Q  + + A   F  M + GI  +  TL ++ 
Sbjct: 381 DLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 440

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      R VHG  ++ G F  D+ + N+++D Y K   +  A  +FE   + D+
Sbjct: 441 KSTAGLQVVHVCRQVHGLSVKSG-FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 499

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +S+ ++IT YAQ G   EA+++F  M++  E+ P++    S+L A +++ A  QG ++H 
Sbjct: 500 VSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQLHV 558

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++K     D+F    LV+MY KCG IDDA   F ++     V W+A+I     HG G +
Sbjct: 559 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQ 618

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QML EGV P+HIT VS+L AC+H+GLV+E + YF  M+E FG KP  +HY CM+
Sbjct: 619 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 678

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG +  A   +  MP   +AS+WGALLGA RIH ++ELG  A++ LF ++ E  G
Sbjct: 679 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 738

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++NIYA+ GKWE V EVR L RD  +KK PG S IEV +KV  F  G+R+H + ++
Sbjct: 739 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQE 798

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L+  M   GYVP     L DVE+ EKE +L  HSE+LA+AFG+I++P  +PI+
Sbjct: 799 IYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIR 858

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH   K+I +I  REIIVRD NRFHHFKDG CSCGDYW
Sbjct: 859 VKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 270/523 (51%), Gaps = 41/523 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y + G    A+  F++  L  G++ + +TF  VLKAC   ++L  GK++H  V+  
Sbjct: 128 LISGYAQNGLGGGALMAFHEMHLL-GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVS 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFVA +L+ MY +      +++LFD++P R+  SWNA+ S Y Q     EA+ + 
Sbjct: 187 GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLF 246

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L G+  +  +++S++  C    +   G +IH Y++K G +++ F +N L++MYAK 
Sbjct: 247 YEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKV 306

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAA---YEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           G +  A+ VF+++ + D+VSWN++IA    +E     +   G                  
Sbjct: 307 GDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG------------------ 348

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
                       +  R +H  +M+      D+ +   +VDMY+K  ++  A   F  LP 
Sbjct: 349 ------------QMKRQLHSSLMKMD-MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 395

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD+I+WN +I+GY+Q     EA+ +F  M +   I  NQ T  +IL + + +  +    +
Sbjct: 396 KDLIAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHVCRQ 454

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H   +K+    D++V   L+D YGKC  ++DA  +F +      V + ++I+ +  +GQ
Sbjct: 455 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 514

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G++AL  F +M D  ++PD     SLL AC++     +G++  H+   ++G    +    
Sbjct: 515 GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFVLDIFAGN 573

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +V+++ + G +  A      +  R   S W A++G    HG+
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSELTERGIVS-WSAMIGGLAQHGH 615



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/592 (27%), Positives = 272/592 (45%), Gaps = 83/592 (14%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   ++  +L  C   ++L  G +IH  + K G   D  +   L+++Y +      ARKL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            D+    D  SW+A+ISGY Q+G    AL    EM L GV  +  T +S+L  C+   ++
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  +V  G E ++FV+N L+ MYAK      + R+FD++ ER+VVSWN++ + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q +    A G F  M  +GI+P+  +L S+ +    L D    + +HG++++ G+   D
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW-D 292

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
               NA+VDMYAK+G +  A +VFE +   D++SWN +I G   +    +A+E+   M+ 
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
                                       ++H+ ++K  +  D+FV+  LVDMY KC  ++
Sbjct: 353 ----------------------------QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 384

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           DA   F  +P    + WNAIIS +  + +  +AL+ F +M  EG+  +  T  ++L   S
Sbjct: 385 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK--S 442

Query: 446 HSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF------------ 492
            +GL V    R  H +  + G    +     ++D +G+  H+  A               
Sbjct: 443 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 502

Query: 493 ----------------------IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
                                 +Q+M ++PD  +  +LL AC       L A    +   
Sbjct: 503 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC-----ANLSAFEQGKQLH 557

Query: 531 VDSENVGYYV------LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           V     G+ +       + N+YA  G  +      S   +RG+     WS++
Sbjct: 558 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI---VSWSAM 606


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/708 (41%), Positives = 427/708 (60%), Gaps = 5/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           +++   + G  S ++  F +  ++SG+  D YTF  V K+    R++  G+++H  +LK 
Sbjct: 15  LMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKS 73

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  SL+  Y +    + ARK+FD+M  RD  SWN++I+GY  +G A + L + 
Sbjct: 74  GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 133

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M + G+ +D  T+ S+   CA S  I  G  +H   VK          N L++MY+K 
Sbjct: 134 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 193

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M +R VVS+ S+IA Y +      A   F  M++ GI PD+ T+ ++ 
Sbjct: 194 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 253

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A+       + VH +I        D+ + NA++DMYAK G +  A  VF  + VKD+
Sbjct: 254 NCCARYRLLDEGKRVHEWIKENDLGF-DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 312

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWNT+I GY++N  A+EA+ +F ++ E    +P++ T   +LPA + + A  +G +IH 
Sbjct: 313 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 372

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++N    D  VA  LVDMY KCG +  A  LF  +     V W  +I+ +G+HG G +
Sbjct: 373 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 432

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F QM   G+  D I+FVSLL ACSHSGLV EG R+F++M+ E  I+P ++HY C+V
Sbjct: 433 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 492

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+  R G L  A+ FI+NMP+ PDA+IWGALL  CRIH +++L    ++++FE++ EN G
Sbjct: 493 DMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTG 552

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVLM+NIYA   KWE V  +R     RGL+K PG S IE+  +V+IF  G+ ++P+ E 
Sbjct: 553 YYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEN 612

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   LR + A+M   GY P   + L D EE EKE  L  HSE+LA+A GIISS     I+
Sbjct: 613 IEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIR 672

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCH   KF+S++T REI++RDSNRFH FKDG CSC  +W
Sbjct: 673 VTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 230/433 (53%), Gaps = 7/433 (1%)

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD++ +  +  WN +++   +SG+   ++ +  +M   GV MD  T + +    +   ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H +I+K G      V N+L+  Y K   +  A +VFD+M ERDV+SWNSII  Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +         F  M  +GI+ DL T+VS+ +  A        R+VH   ++  +  ED
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
               N ++DMY+K G ++SA AVF  +  + V+S+ ++I GYA+ GLA EA+++F+ MEE
Sbjct: 181 RFC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              I+P+  T  ++L   +    L +G ++H  + +N L FD+FV+  L+DMY KCG + 
Sbjct: 240 -EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTAC 444
           +A  +F ++     + WN II  +  +   ++AL+ F  +L+E    PD  T   +L AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 445 SHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           +      +G+  + ++M+  +    H+ +   +VD++ + G L +AH    ++  + D  
Sbjct: 359 ASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASK-DLV 415

Query: 504 IWGALLGACRIHG 516
            W  ++    +HG
Sbjct: 416 SWTVMIAGYGMHG 428


>gi|255555443|ref|XP_002518758.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542139|gb|EEF43683.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 379

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/369 (69%), Positives = 307/369 (83%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +FGL   ARKLFD+MP+RD GSWNAMISGYCQ+GN VE LDI+DEMR +GV+MD   
Sbjct: 1   MYAKFGLVGEARKLFDEMPIRDCGSWNAMISGYCQNGNVVEVLDIVDEMRKDGVAMDAFA 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           VASILPVCA+ +++LSG LIHL ++K GLEF+ FVSN LI MYAKFG +  A +VFD M+
Sbjct: 61  VASILPVCAKLNDVLSGKLIHLLVIKLGLEFDSFVSNALIAMYAKFGSLGLAQKVFDHMV 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            RD+VSWNSIIAAYEQ++D  TA  FF  M+Q G++PDLLT++SL SIVAQLND +NSRS
Sbjct: 121 VRDIVSWNSIIAAYEQNDDAATARSFFDKMRQIGVRPDLLTVLSLASIVAQLNDHQNSRS 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HGF+ RRGWFM+D +IGNAVVDMYAKLG   SA AVFE LPVKDVISWNTLITGYAQNG
Sbjct: 181 IHGFVTRRGWFMKDTVIGNAVVDMYAKLGATESARAVFERLPVKDVISWNTLITGYAQNG 240

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           LASEAIEV+ MMEEC E++P QGT+VSILPAYSH+GAL QG++ H  VIKN L  DVFV 
Sbjct: 241 LASEAIEVYNMMEECKEVSPTQGTWVSILPAYSHLGALHQGMRTHGHVIKNSLHLDVFVG 300

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           TCL+DMYGKCG++DDAMSLFY+VPR  +VPWNAIISCH +HG G+K +  FR+M+D+GV+
Sbjct: 301 TCLIDMYGKCGKLDDAMSLFYEVPRKDAVPWNAIISCHAVHGHGEKVIKLFREMIDDGVK 360

Query: 432 PDHITFVSL 440
           PD +  + +
Sbjct: 361 PDQLVAIQV 369



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 184/338 (54%), Gaps = 8/338 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G + E +D   +     G+  D +    +L  C  L D   GK IH  V+KL
Sbjct: 29  MISGYCQNGNVVEVLDIVDEMR-KDGVAMDAFAVASILPVCAKLNDVLSGKLIHLLVIKL 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E+D FV+ +L+ MY +FG   +A+K+FD M VRD  SWN++I+ Y Q+ +A  A    
Sbjct: 88  GLEFDSFVSNALIAMYAKFGSLGLAQKVFDHMVVRDIVSWNSIIAAYEQNDDAATARSFF 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAK 176
           D+MR  GV  D +TV S+  + A+ ++  +   IH ++ + G    +  + N +++MYAK
Sbjct: 148 DKMRQIGVRPDLLTVLSLASIVAQLNDHQNSRSIHGFVTRRGWFMKDTVIGNAVVDMYAK 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVS 235
            G    A  VF+++  +DV+SWN++I  Y Q+     A   +  M++   + P   T VS
Sbjct: 208 LGATESARAVFERLPVKDVISWNTLITGYAQNGLASEAIEVYNMMEECKEVSPTQGTWVS 267

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    + L         HG +++    + DV +G  ++DMY K G ++ A ++F  +P K
Sbjct: 268 ILPAYSHLGALHQGMRTHGHVIKNSLHL-DVFVGTCLIDMYGKCGKLDDAMSLFYEVPRK 326

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           D + WN +I+ +A +G   + I++F+ M + + + P+Q
Sbjct: 327 DAVPWNAIISCHAVHGHGEKVIKLFREMID-DGVKPDQ 363



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 186/352 (52%), Gaps = 12/352 (3%)

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           MYAKFG++  A ++FD+M  RD  SWN++I+ Y Q+ + +        M++ G+  D   
Sbjct: 1   MYAKFGLVGEARKLFDEMPIRDCGSWNAMISGYCQNGNVVEVLDIVDEMRKDGVAMDAFA 60

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           + S+  + A+LND  + + +H  +++ G    D  + NA++ MYAK G +  A  VF+ +
Sbjct: 61  VASILPVCAKLNDVLSGKLIHLLVIKLG-LEFDSFVSNALIAMYAKFGSLGLAQKVFDHM 119

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            V+D++SWN++I  Y QN  A+ A   F  M +   + P+  T +S+    + +   +  
Sbjct: 120 VVRDIVSWNSIIAAYEQNDDAATARSFFDKMRQIG-VRPDLLTVLSLASIVAQLNDHQNS 178

Query: 353 IKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
             IH  V +      D  +   +VDMY K G  + A ++F ++P    + WN +I+ +  
Sbjct: 179 RSIHGFVTRRGWFMKDTVIGNAVVDMYAKLGATESARAVFERLPVKDVISWNTLITGYAQ 238

Query: 412 HGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPH 469
           +G   +A+  +  M + + V P   T+VS+L A SH G + +G R + H+++       H
Sbjct: 239 NGLASEAIEVYNMMEECKEVSPTQGTWVSILPAYSHLGALHQGMRTHGHVIKNSL----H 294

Query: 470 LKHY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           L  +   C++D++G+ G L  A +    +P R DA  W A++    +HG+ E
Sbjct: 295 LDVFVGTCLIDMYGKCGKLDDAMSLFYEVP-RKDAVPWNAIISCHAVHGHGE 345



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I+ Y + G  SEA++ +        + P   T+  +L A  +L     G + H  V+K 
Sbjct: 232 LITGYAQNGLASEAIEVYNMMEECKEVSPTQGTWVSILPAYSHLGALHQGMRTHGHVIKN 291

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVFV   L+ MY + G  + A  LF ++P +D+  WNA+IS +   G+  + + + 
Sbjct: 292 SLHLDVFVGTCLIDMYGKCGKLDDAMSLFYEVPRKDAVPWNAIISCHAVHGHGEKVIKLF 351

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNI 145
            EM  +GV  D +    +  V  +  ++
Sbjct: 352 REMIDDGVKPDQLVAIQVWSVMVKDTSV 379


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/683 (42%), Positives = 421/683 (61%), Gaps = 14/683 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDV-FVAASLLHMYCRFGLANVARKLFDD---- 88
           +  +L+ C +L   K IH S+   GF        A L+ +Y + G  + AR LFD     
Sbjct: 28  YDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 89  ----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
                   +S   N M+  Y  +G + EA+D+   M+  GV ++  T   +L VCA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
            + G ++H  +V+ G   +LFV   L++MYAK G +  A  VFD+M+ RDVV W ++I  
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           YEQ+  P+ A   F  MQ+ G   D +T +S+ S V QL D R + SVHG+ +  G F+ 
Sbjct: 208 YEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNG-FIG 266

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV +GN++V MYAK G +  A  VF+ +  ++ ISWN++++GY QNG  ++A+ +F  M+
Sbjct: 267 DVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQ 326

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             +E +PN  T + ++ A S++G+   G K+H  VI + +  D  +   ++DMY KCG +
Sbjct: 327 -ASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 385

Query: 385 DDAMSLFY--QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           D A+ +F   ++       WN +IS +G+HG G +AL  F +M  EGV P+ ITF S+L+
Sbjct: 386 DTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 445

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSH+GL+ EG++ F  M +   ++P +KHY CMVD+ GRAG L  A   I+ +P RP  
Sbjct: 446 ACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSD 504

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
            +WGALL ACRIHGN ELG +A++ LF+++ E+ GYYVLMSNIYA   KW+ V+ VR   
Sbjct: 505 EVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNM 564

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           + RGLKK   +S IE   +V  F+T +++ P Y ++Y ++ +L  +MK +GYVPD S VL
Sbjct: 565 KSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVL 624

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DVE ++KEH+L  HSE+LA+AFGI+      PIQ+ KNLRVC DCH   KFIS I  R+
Sbjct: 625 HDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRK 684

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           IIVRD NRFHHF+ G CSCGDYW
Sbjct: 685 IIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  Y   GR  EA+D  Y +    G+  + +T+P VLK C +    V G+ +H  V++ 
Sbjct: 103 MLRAYANAGRSYEAID-LYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRT 161

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+FV A+L+ MY + G    A ++FD M +RD   W AMI+ Y Q+   ++AL + 
Sbjct: 162 GFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLF 221

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG   D IT  S+     +  +    + +H Y V +G   ++ V N+++ MYAK 
Sbjct: 222 RKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKC 281

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD+M ER+ +SWNS+++ Y Q+  P  A   F  MQ +   P+ +T + + 
Sbjct: 282 GNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMV 341

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG--LPVK 295
           S  + L      R +H F++     + D  + NA++DMY K G +++A  +F    L  +
Sbjct: 342 SACSYLGSKHLGRKLHNFVISSKMDI-DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV SWN LI+GY  +G   EA+E+F  M +   + PN  T+ SIL A SH G + +G K 
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRM-QVEGVEPNDITFTSILSACSHAGLIDEGRKC 459

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            A + K  +  ++    C+VDM G+ G +++A  L  ++P R S   W A++    IHG 
Sbjct: 460 FADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 519

Query: 415 ---GDKALNFFRQMLDEGVRPDHITFVSLLT 442
              G+ A N   Q+      P+H  +  L++
Sbjct: 520 TELGEIAANNLFQL-----EPEHTGYYVLMS 545


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/708 (40%), Positives = 427/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           + S YV      EAV  F+   L SG+RP+ ++   ++  C  L   V G+KIH  ++KL
Sbjct: 82  LFSCYVHSDMHGEAVSLFHDMVL-SGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKL 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ D F A +L+ MY + G+   A  +FD++   D  SWNA+I+G         AL++L
Sbjct: 141 GYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELL 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G+  +  T++S L  CA       G  +H  ++K  +  + F+   LI+MY+K 
Sbjct: 201 REMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKC 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M  A  VF  M ERD+++WN++I+ + Q+ +   A   F  M   GI  +  TL ++ 
Sbjct: 261 NSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             +A L      R +H   ++ G+  ++ ++ N+++D Y K G +  A  VFE  P+ D+
Sbjct: 321 KSIAALQANYMCRQIHALSLKSGFEFDNYVV-NSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + + +L+T YAQ+G   EA+ ++  M++   I P+     S+L A + + A  QG ++H 
Sbjct: 380 VLFTSLVTAYAQDGQGEEALRLYLEMQD-RGIKPDSFVCSSLLNACASLSAYEQGKQVHV 438

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++K     D+F    LV+MY KCG I+DA   F ++P    V W+A+I     HG G +
Sbjct: 439 HILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKE 498

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F+QML  GV P+HIT VS+L AC+H+GLV+E + YF+ M+  FGI+P  +HY CM+
Sbjct: 499 ALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMI 558

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   +  MP + +A +WGALLGA RIH N++LG  A++ L  ++ E  G
Sbjct: 559 DLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSG 618

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++NIYA+VG W+ V  VR L +D  +KK PG S +EV +KV  F  G+R+H +  +
Sbjct: 619 THVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTE 678

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L+  +K  GYVP     L DVE  EKE +L  HSE+LA+AFG+I++PP +PI+
Sbjct: 679 IYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIR 738

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS+I  REIIVRD+NRFHHF++G CSCG+YW
Sbjct: 739 VKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  271 bits (694), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 272/495 (54%), Gaps = 9/495 (1%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G++ + + FP VLKAC   ++LV GK++H  V+  GF+ D FVA SL+ +Y + G    A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R LFD +P R   SWNA+ S Y  S    EA+ +  +M L G+  +  +++S++ VC   
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           ++ + G  IH Y++K G + + F +N L++MYAK G++  A  VFD++ + D+VSWN+II
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A          A      M ++G+ P++ TL S     A +      R +H  +++    
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMD-M 243

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D  +G  ++DMY+K   ++ A  VF+ +P +D+I+WN +I+G++QN    EA  +F +
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPL 303

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M     I  NQ T  ++L + + + A     +IHA  +K+   FD +V   L+D YGKCG
Sbjct: 304 M-HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCG 362

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            ++DA  +F + P    V + ++++ +   GQG++AL  + +M D G++PD     SLL 
Sbjct: 363 HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422

Query: 443 ACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           AC+      +G Q + H+++  FG    +     +V+++ + G +  A      +PVR  
Sbjct: 423 ACASLSAYEQGKQVHVHILK--FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480

Query: 502 ASIWGALLGACRIHG 516
            S W A++G    HG
Sbjct: 481 VS-WSAMIGGLAQHG 494



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 3/379 (0%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M L G+  +     S+L  C  + +++ G  +H  +V  G + + FV+N+L+ +YAK G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
              A  +FD + +R VVSWN++ + Y  S+    A   F  M  +GI+P+  +L S+ ++
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
              L D    R +HG++++ G +  D    NA+VDMYAK+GI+  A +VF+ +   D++S
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLG-YDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVS 179

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN +I G   +     A+E+ + M +   + PN  T  S L A + +     G ++H+ +
Sbjct: 180 WNAIIAGCVLHEYHHRALELLREMNKSG-MCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK  +  D F+   L+DMY KC  +DDA  +F  +P    + WNA+IS H  + + ++A 
Sbjct: 239 IKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA 298

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F  M  EG+  +  T  ++L + + +   +   R  H +  + G +        ++D 
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVLKSIA-ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 480 FGRAGHLGMAHNFIQNMPV 498
           +G+ GH+  A    +  P+
Sbjct: 358 YGKCGHVEDATRVFEESPI 376


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/683 (40%), Positives = 420/683 (61%), Gaps = 12/683 (1%)

Query: 33  TFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T  PVLK C N   L   + +H   +K+G EWDVFV+ +L+++Y + G    AR LFD M
Sbjct: 185 TLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWM 244

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC--ARSDNILS 147
             RD   WN M+ GY Q G   EA  +  E    G+  D  +V  IL  C  A +D++  
Sbjct: 245 RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLEL 304

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H   VK GL+ ++ V+N+L+NMY+K G    A  VF+ M   D++SWNS+I++  Q
Sbjct: 305 GKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQ 364

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLT-SIVAQLNDC----RNSRSVHGFIMRRGWF 262
           S+    +   F  +   G++PD  TL S+T +  A+   C       + +H   ++ G F
Sbjct: 365 SSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAG-F 423

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D+ + + ++DMY K G + +A  VF  +   D ++W ++I+G   NG   +A+ ++  
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 483

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M + + + P++ T+ +++ A S V AL QG ++HA VIK     D FV T LVDMY KCG
Sbjct: 484 MRQ-SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 542

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            I+DA  LF ++   +   WNA++     HG  ++A+N F+ M   G+ PD ++F+ +L+
Sbjct: 543 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 602

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSH+GL SE   Y H M  ++GI+P ++HY C+VD  GRAG +  A   I+ MP +  A
Sbjct: 603 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 662

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           SI  ALLGACRI G++E G   + RLF ++  +   YVL+SNIYA   +W+ V + R + 
Sbjct: 663 SINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 722

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           + + +KK PG+S I+V N + +F   +R+HP+ + IYD++  +   ++  GYVPD  FVL
Sbjct: 723 KRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 782

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DVE++EKE  L  HSE+LAIA+G+IS+P  + I++ KNLRVCGDCHN  K+IS++ ERE
Sbjct: 783 LDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFERE 842

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           I++RD+NRFHHF+DG+CSCGDYW
Sbjct: 843 IVLRDANRFHHFRDGVCSCGDYW 865



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 261/494 (52%), Gaps = 20/494 (4%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           +  NL+ GK  H  ++  G   D F++ +LL MY + G  + AR++FD  P RD  +WNA
Sbjct: 89  STHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA 148

Query: 100 MISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
           ++  Y  S     GNA E L +   +R    S   +T+A +L +C  S  + +   +H Y
Sbjct: 149 ILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGY 208

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            +K GLE+++FVS  L+N+Y+K G MR A  +FD M ERDVV WN ++  Y Q      A
Sbjct: 209 AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEA 268

Query: 215 HGFFTTMQQAGIQPDLLT--LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
              F+   ++G++PD  +  L+    + A  +D    + VHG  ++ G    DV + N++
Sbjct: 269 FQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSG-LDSDVSVANSL 327

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINP 331
           V+MY+K+G    A  VF  +   D+ISWN++I+  AQ+ L  E++ +F  ++ E   + P
Sbjct: 328 VNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE--GLKP 385

Query: 332 NQGTYVSILPAYSHVGA-----LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           +  T  SI  A +         L QG +IHA  IK     D+ V + ++DMY KCG + +
Sbjct: 386 DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVN 445

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +     V W ++IS    +G  D+AL  + +M    V PD  TF +L+ A S 
Sbjct: 446 AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSC 505

Query: 447 SGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
              + +G Q + ++++ +    P +     +VD++ + G++  A+   + M VR + ++W
Sbjct: 506 VTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALW 562

Query: 506 GALLGACRIHGNME 519
            A+L     HGN E
Sbjct: 563 NAMLVGLAQHGNAE 576



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 227/425 (53%), Gaps = 15/425 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-----RNLVDGKKIHCSVL 55
           M+  YV+ G   EA   F +F   SGLRPD ++   +L  C      +L  GK++H   +
Sbjct: 255 MLKGYVQLGLEKEAFQLFSEFH-RSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAV 313

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           K G + DV VA SL++MY + G A  AR++F+DM   D  SWN+MIS   QS    E+++
Sbjct: 314 KSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVN 373

Query: 116 ILDEMRLEGVSMDPITVASI-LPVCARSDNIL----SGLLIHLYIVKHGLEFNLFVSNNL 170
           +  ++  EG+  D  T+ASI L   A++   L     G  IH + +K G + +L V++ +
Sbjct: 374 LFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 433

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY K G M +A  VF+ +   D V+W S+I+    + +   A   +  M+Q+ + PD 
Sbjct: 434 LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 493

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  +L    + +      R +H  +++    + D  +G ++VDMYAK G I  A  +F+
Sbjct: 494 YTFATLIKASSCVTALEQGRQLHANVIKLD-CVSDPFVGTSLVDMYAKCGNIEDAYRLFK 552

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            + V+++  WN ++ G AQ+G A EA+ +F+ M+  + I P++ +++ IL A SH G   
Sbjct: 553 KMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS-HGIEPDRVSFIGILSACSHAGLTS 611

Query: 351 QGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN-AIISC 408
           +  + +H+      +  ++   +CLVD  G+ G + +A  +   +P  +S   N A++  
Sbjct: 612 EAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGA 671

Query: 409 HGIHG 413
             I G
Sbjct: 672 CRIQG 676



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 199/401 (49%), Gaps = 28/401 (6%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L     + N+L G   H  IV  G   + F+SNNL+ MY+K G +  A +VFD   ERD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 195 VVSWNSIIAAYE---QSNDPITAHG--FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           +V+WN+I+ AY     SND     G   F  ++ +      +TL  +  +         +
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 250 RSVHGFIMRRG--WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             VHG+ ++ G  W   DV +  A+V++Y+K G +  A  +F+ +  +DV+ WN ++ GY
Sbjct: 203 EGVHGYAIKIGLEW---DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 259

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA--YSHVGALRQGIKIHARVIKNCLC 365
            Q GL  EA ++F        + P++ +   IL    ++    L  G ++H   +K+ L 
Sbjct: 260 VQLGLEKEAFQLFSEFHRSG-LRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD 318

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DV VA  LV+MY K G    A  +F  +     + WN++IS        ++++N F  +
Sbjct: 319 SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL 378

Query: 426 LDEGVRPDHITF--VSLLTACSHSG---LVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDL 479
           L EG++PDH T   ++L TA    G   L+ +G++ + H ++  F    H+     ++D+
Sbjct: 379 LHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN--SGILDM 436

Query: 480 FGRAGHL---GMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + + G +   G+  N+I      PD   W +++  C  +GN
Sbjct: 437 YIKCGDMVNAGIVFNYIS----APDDVAWTSMISGCVDNGN 473


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/815 (36%), Positives = 452/815 (55%), Gaps = 113/815 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++ +Y   G   E +  FY   +  G+RPD + FP V KAC  L +   GK ++  +L +
Sbjct: 161 IMEMYCGLGDYEETIKLFY-LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 219

Query: 58  GFEWDVFVAASLLHMYCRFGLANVAR-------------------------------KLF 86
           GFE +  V  S+L M+ + G  ++AR                               K  
Sbjct: 220 GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCI 279

Query: 87  DDMPVR----DSGSWNAMISGYCQSG--------------------NAV----------- 111
            DM +     D  +WNA+ISGY QSG                    N V           
Sbjct: 280 SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 112 -----EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLF 165
                EAL +  +M LEGV  + IT+AS +  C     +  G  IH Y +K   L+ +L 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 166 VSNNLINMYAK----------FGMMRH---------------------ALRVFDQM---- 190
           V N+L++ YAK          FGM++                      A+ +  +M    
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG 459

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +E D+++WN ++  + Q  D   A  FF  M   G+ P+  T+    +   Q+ + +  +
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +HG+++R    +    +G+A++ MY+    +  AC+VF  L  +DV+ WN++I+  AQ+
Sbjct: 520 EIHGYVLRNHIEL-STGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G +  A+++ + M   N +  N  T VS LPA S + ALRQG +IH  +I+  L    F+
Sbjct: 579 GRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 637

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMYG+CG I  +  +F  +P+   V WN +IS +G+HG G  A+N F+Q    G+
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 697

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +P+HITF +LL+ACSHSGL+ EG +YF MM+ E+ + P ++ Y CMVDL  RAG      
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            FI+ MP  P+A++WG+LLGACRIH N +L   A+  LFE++ ++ G YVLM+NIY+  G
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +WE   ++R L ++RG+ K PG S IEV  K+  F  G+ +HP  E+I  ++ +L   +K
Sbjct: 818 RWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIK 877

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
            +GYVPD +FVLQDV+EDEKE  L  HSE++A+AFG+IS+   +P++I KNLRVCGDCH+
Sbjct: 878 EIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHS 937

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            TKFIS++ +R+II+RD+ RFHHF DG+CSCGDYW
Sbjct: 938 ATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 216/474 (45%), Gaps = 52/474 (10%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPD--FYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           R G L+ A        LT+   PD     +  +L+ CR L +   G ++H  ++  G + 
Sbjct: 66  RNGVLNNAAMLLSSMDLTN---PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDV 122

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
             F+ + LL +YC+ G    AR++FD M  R+  SW A++  YC  G+  E + +   M 
Sbjct: 123 CEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMV 182

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EGV  D      +   C+   N   G  ++ Y++  G E N  V  ++++M+ K G M 
Sbjct: 183 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A R F+++  +DV  WN +++ Y    +   A    + M+ +G++PD +T         
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT--------- 293

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKD---- 296
                              W        NA++  YA+ G    A   F E   +KD    
Sbjct: 294 -------------------W--------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW  LI G  QNG   EA+ VF+ M     + PN  T  S + A +++  LR G +IH
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 357 ARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              IK   L  D+ V   LVD Y KC  ++ A   F  + ++  V WNA+++ + + G  
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           ++A+    +M  +G+ PD IT+  L+T  +  G       +F  M    G+ P+
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH-SMGMDPN 498


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/708 (40%), Positives = 435/708 (61%), Gaps = 7/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK---ACRNLVDGKKIHCSVLKL 57
           ++S Y + G   E+V  F +     G+  + YTF  VLK   A   + + K++H  VLKL
Sbjct: 166 LMSEYAKIGNFRESVSLFKKMQ-KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +  V  SL+  Y +FG    A  LFD++   D  SWN+MI+G   +G +   L+I 
Sbjct: 225 GFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M + GV +D  T+ S+L  CA   N+  G  +H + VK      +  SN L++MY+K 
Sbjct: 285 IQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M +  +VSW SIIAAY +      A G F  MQ  G++PD+ T+ S+ 
Sbjct: 345 GNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIV 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A  +     R VH ++++ G    ++ + NA+++MYAK G +  A  VF  +PVKD+
Sbjct: 405 HACACSSSLDKGRDVHSYVIKNG-MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I GY+QN L +EA+E+F  M++  +  P+  T   +LPA + + AL +G +IH 
Sbjct: 464 VSWNTMIGGYSQNLLPNEALELFLDMQK--QFKPDDITMACVLPACAGLAALDKGREIHG 521

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++     D+ VA  LVDMY KCG +  A  LF  +P+   + W  +I+ +G+HG G++
Sbjct: 522 HILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNE 581

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M   G+ PD  +F ++L ACSHSGL++EG ++F+ M+ E G++P L+HY C+V
Sbjct: 582 AISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVV 641

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G+L  A+ FI++MP++PD +IWG LL  CRIH +++L    ++ +FE++ +N  
Sbjct: 642 DLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTR 701

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYV+++N+YA   KWE V ++R   + RG K+ PG S IEV  K +IF  GN  HP+ +K
Sbjct: 702 YYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKK 761

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L  LT +M++  Y     +VL + ++ EKE I   HSE+ A+AFGI++ PP   ++
Sbjct: 762 IDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVR 821

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KN RVCGDCH   KF+S+ T+ EI++RDSNRFHHFKDG+CSC D +
Sbjct: 822 VSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRDAF 869



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 261/520 (50%), Gaps = 15/520 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           I+ +   G L  A++     T +        ++  VL+ C   ++L DGK++H  ++  G
Sbjct: 68  INKFCEMGDLRNAIELL---TKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNG 124

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              D  + A L+ MY   G     RK+FD +       WN ++S Y + GN  E++ +  
Sbjct: 125 ISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 184

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M+  GV  +  T   +L   A    +     +H Y++K G   N  V N+LI  Y KFG
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  +FD++ E DVVSWNS+I     +         F  M   G++ DL TLVS+  
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A + +    R++HGF + +  F E+V+  N ++DMY+K G +N A  VF  +    ++
Sbjct: 305 ACANIGNLSLGRALHGFGV-KACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIV 363

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW ++I  Y + GL S+AI +F  M+    + P+  T  SI+ A +   +L +G  +H+ 
Sbjct: 364 SWTSIIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           VIKN +  ++ V   L++MY KCG +++A  +F ++P    V WN +I  +  +   ++A
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC-M 476
           L  F  M  +  +PD IT   +L AC+    + +G+  + H+++  +    H+    C +
Sbjct: 483 LELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHV---ACAL 538

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           VD++ + G L +A      +P + D   W  ++    +HG
Sbjct: 539 VDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 577


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 302/747 (40%), Positives = 450/747 (60%), Gaps = 56/747 (7%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E V   Y+     G RPD YTFP VLKAC  +     G  +H  V   GFEW+VFV   L
Sbjct: 108 EDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGL 167

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSG---SWNAMISGYCQSGNAVEALDILDEMRLE-GV 125
           + MY R G    AR++FD+M  R  G   SWN++++ Y Q G+++ A+ + + M  + G+
Sbjct: 168 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 227

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D +++ ++LP CA       G  +H Y ++ GL  ++FV N +++MYAK GMM  A +
Sbjct: 228 RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANK 287

Query: 186 VFDQMMERDVVSWNS-----------------------------------IIAAYEQSND 210
           VF++M  +DVVSWN+                                   +IA Y Q   
Sbjct: 288 VFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGL 347

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM------- 263
              A   F  M+  G +P+++TLVSL S  A      + +  H   ++  W +       
Sbjct: 348 GFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIK--WILNLDENDP 405

Query: 264 -EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVF 320
            +D+++ NA++DMY+K     +A A+F+ +P KD  V++W  LI G AQ+G A+EA+E+F
Sbjct: 406 GDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF 465

Query: 321 -QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMY 378
            QM++  N + PN  T    L A + +GALR G +IHA V++N      +FVA CL+DMY
Sbjct: 466 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMY 525

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            K G +D A  +F  + + + V W ++++ +G+HG+G++AL  F +M   G+ PD +TFV
Sbjct: 526 SKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFV 585

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L ACSHSG+V +G  YF+ M ++FG+ P  +HY CMVDL  RAG L  A   I+ MP+
Sbjct: 586 VVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPM 645

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +P  ++W ALL ACR++ N+ELG  A+++L E++S N G Y L+SNIYAN   W+ V  +
Sbjct: 646 KPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARI 705

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L ++ G+KK PG S ++       F+ G+ +HP  ++IYD LR+L  ++K+LGYVPD 
Sbjct: 706 RYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDN 765

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
            F L DV+++EK  +L+ HSE+LA+A+GI+++ P +PI+I KNLR CGDCH+   +IS I
Sbjct: 766 RFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISII 825

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            E EIIVRDS+RFHHFK+G CSC  YW
Sbjct: 826 IEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 246/532 (46%), Gaps = 60/532 (11%)

Query: 41  CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS--WN 98
           C++L   + IH  +L  G   D      ++ MY  F     A  +   +         WN
Sbjct: 39  CKSLASAELIHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWN 95

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            +I      G   + L +   M+  G   D  T   +L  C    +   G  +H  +   
Sbjct: 96  QLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFAS 155

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAH 215
           G E+N+FV N L++MY + G   +A +VFD+M ER   D+VSWNSI+AAY Q  D I A 
Sbjct: 156 GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAM 215

Query: 216 GFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
             F  M +  GI+PD ++LV++    A +      + VHG+ +R G F EDV +GNAVVD
Sbjct: 216 KMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF-EDVFVGNAVVD 274

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLIT----------------------------- 305
           MYAK G++  A  VFE + VKDV+SWN ++T                             
Sbjct: 275 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 334

Query: 306 ------GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
                 GYAQ GL  EA++VF+ M  C    PN  T VS+L   +  G L  G + H   
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQMRLCGS-EPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 360 IKNCLCF-------DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCHG 410
           IK  L         D+ V   L+DMY KC     A ++F  +P    S V W  +I  + 
Sbjct: 394 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453

Query: 411 IHGQGDKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIK 467
            HG+ ++AL  F QML  D  V P+  T    L AC+  G +  G Q + ++++  F   
Sbjct: 454 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFE-S 512

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             L    C++D++ ++G +  A     NM  R   S W +L+    +HG  E
Sbjct: 513 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHGRGE 563



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 226/461 (49%), Gaps = 58/461 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +++ Y++ G    A+  F + T   G+RPD  +   VL AC ++     GK++H   L+ 
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAM----------------- 100
           G   DVFV  +++ MY + G+   A K+F+ M V+D  SWNAM                 
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 101 ------------------ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                             I+GY Q G   EALD+  +MRL G   + +T+ S+L  CA +
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALA 380

Query: 143 DNILSGLLIHLYIVKHGLEF-------NLFVSNNLINMYAKFGMMRHALRVFDQM--MER 193
             +L G   H + +K  L         +L V N LI+MY+K    + A  +FD +   +R
Sbjct: 381 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 440

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRS 251
            VV+W  +I    Q  +   A   F+ M Q    + P+  T+       A+L   R  R 
Sbjct: 441 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 500

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H +++R  +    + + N ++DMY+K G +++A  VF+ +  ++ +SW +L+TGY  +G
Sbjct: 501 IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG 560

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+++F  M++   + P+  T+V +L A SH G + QGI     + K+   F V   
Sbjct: 561 RGEEALQIFYEMQKVGLV-PDGVTFVVVLYACSHSGMVDQGINYFNGMNKD---FGVVPG 616

Query: 372 ----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
                C+VD+  + GR+D+AM L   +P + +   W A++S
Sbjct: 617 AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 657


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/689 (41%), Positives = 416/689 (60%), Gaps = 3/689 (0%)

Query: 18  FYQFTL-TSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           FY   L  + L PD +T+   + A  +   G  +H   +  GF+ ++FVA++L+ +YC+F
Sbjct: 92  FYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKF 151

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
                ARK+FD MP RD+  WN MI+G  ++    +++ +  +M  +GV +D  TVA++L
Sbjct: 152 SRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVL 211

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
           P  A    +  G+ I    +K G  F+ +V   LI++++K   +  A  +F  + + D+V
Sbjct: 212 PAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLV 271

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           S+N++I+ +  + +   A  +F  +  +G +    T+V L  + +       +  + GF 
Sbjct: 272 SYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++ G  ++  +   A+  +Y++L  I+ A  +F+    K V +WN +I+GYAQ+GL   A
Sbjct: 332 VKSGTILQPSV-STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           I +FQ M    E  PN  T  SIL A + +GAL  G  +H  +    L  +++V+T L+D
Sbjct: 391 ISLFQEMMT-TEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALID 449

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY KCG I +A  LF      ++V WN +I  +G+HG GD+AL  F +ML  G +P  +T
Sbjct: 450 MYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVT 509

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F+S+L ACSH+GLV EG   FH M  ++ I+P  +HY CMVD+ GRAG L  A  FI+ M
Sbjct: 510 FLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKM 569

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
           PV P  ++WG LLGAC IH +  L  VAS+RLFE+D  NVGYYVL+SNIY+    +    
Sbjct: 570 PVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAA 629

Query: 557 EVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
            VR   + R L KTPG + IEVN    +F  G+R+H +   IY +L  LT KM+ +GY  
Sbjct: 630 SVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQS 689

Query: 617 DKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
           +    L DVEE+EKE +   HSE+LAIAFG+I++ P + I+I KNLRVC DCH  TKFIS
Sbjct: 690 ETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFIS 749

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +ITER I+VRD+NRFHHFKDGICSCGDYW
Sbjct: 750 KITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           + HA++I+N    D+   T L       G    A +LF+ VP+     +N +I   G   
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIK--GFSF 83

Query: 414 QGD-KALNFFRQML-DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
             D  +++F+  +L +  + PD+ T+   ++A     L        H      G   +L 
Sbjct: 84  SPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNL----GMCLHAHAVVDGFDSNLF 139

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
               +VDL+ +   +  A      MP R D  +W  ++
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMPDR-DTVLWNTMI 176


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A++ F +  L SG  PD  T   +L AC ++ D   GK++H  +LK 
Sbjct: 215 LISRHAQCGNGESALEIFEEMRL-SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  +  SLL +Y + G+   A ++F      +   WN M+  Y Q  +  ++ D+ 
Sbjct: 274 GMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV  +  T   +L  C  +  I  G  IHL  +K G E +++VS  LI+MY+K+
Sbjct: 334 CQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKY 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+ + +  +DVVSW S+IA Y Q      A   F  MQ  GI PD + L S  
Sbjct: 394 GWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAI 453

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +   R  + +H  +   G +  DV I NA+V++YA+ G    A ++FE +  KD 
Sbjct: 454 SACAGIKAMRQGQQIHSRVYVSG-YSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDK 512

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +++G+AQ+GL  EA+EVF  M +   +  N  T+VS + A +++  ++QG +IHA
Sbjct: 513 ITWNGMVSGFAQSGLYEEALEVFIKMYQAG-VKYNVFTFVSSISASANLADIKQGKQIHA 571

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VIK     +  VA  L+ +YGKCG I+DA   F+++   + V WN II+    HG G +
Sbjct: 572 TVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLE 631

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M  E GI P   HY C+V
Sbjct: 632 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVV 691

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A  F++ MPV  +A +W  LL ACR+H N+E+G +A+  L E++  +  
Sbjct: 692 DILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSA 751

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA  GKW   D VR + +DRG++K PG S IEV N V  F+ G+R HP   +
Sbjct: 752 SYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQ 811

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L +L  ++  +GY+    F+  + E+++K+     HSE+LA+AFG++S PP  P++
Sbjct: 812 IYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLR 871

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH W KF S++  REI++RD  RFHHF +G CSCGD+W
Sbjct: 872 VIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 267/519 (51%), Gaps = 8/519 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           M+S Y R G   EAV  ++Q    SG+ P  Y    VL AC        G+ +H  V K 
Sbjct: 114 MLSGYARNGLGEEAVGLYHQMH-CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQ 172

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +  V  +L+ +Y RFG  ++A ++F +MP  D  ++N +IS + Q GN   AL+I 
Sbjct: 173 GSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIF 232

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EMRL G + D +T+AS+L  CA   ++  G  +H Y++K G+  +  +  +L+++Y K 
Sbjct: 233 EEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKC 292

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  AL +F      +VV WN ++ AY Q +D   +   F  M  AG++P+  T   L 
Sbjct: 293 GVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLL 352

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                  +      +H   ++ G F  D+ +   ++DMY+K G ++ A  + E L  KDV
Sbjct: 353 RTCTYAGEINLGEQIHLLSIKTG-FESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV 411

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I GY Q+    EA+E F+ M+    I P+     S + A + + A+RQG +IH+
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKDMQLFG-IWPDNIGLASAISACAGIKAMRQGQQIHS 470

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RV  +    DV +   LV++Y +CGR  +A SLF  +     + WN ++S     G  ++
Sbjct: 471 RVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEE 530

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M   GV+ +  TFVS ++A ++   + +G++  H    + G     +    ++
Sbjct: 531 ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQ-IHATVIKTGCTSETEVANALI 589

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            L+G+ G +  A      M  R   S W  ++ +C  HG
Sbjct: 590 SLYGKCGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHG 627



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 235/480 (48%), Gaps = 8/480 (1%)

Query: 34  FPPVLKACRNLVDG----KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           F   L+ CR  V        IH   +  G   D      L+ +Y + GL   AR++F+ +
Sbjct: 44  FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQL 103

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             RD+ SW AM+SGY ++G   EA+ +  +M   GV   P  ++S+L  C ++     G 
Sbjct: 104 SARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           L+H  + K G      V N LI +Y +FG +  A RVF +M   D V++N++I+ + Q  
Sbjct: 164 LVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +  +A   F  M+ +G  PD +T+ SL +  A + D    + +H ++++ G    D II 
Sbjct: 224 NGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAG-MSPDYIIE 282

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            +++D+Y K G+I  A  +F+     +V+ WN ++  Y Q    +++ ++F  M     +
Sbjct: 283 GSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAG-V 341

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN+ TY  +L   ++ G +  G +IH   IK     D++V+  L+DMY K G +D A  
Sbjct: 342 RPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR 401

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +   +     V W ++I+ +  H    +AL  F+ M   G+ PD+I   S ++AC+    
Sbjct: 402 ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKA 461

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + +GQ+  H      G    +  +  +V+L+ R G    A +  + +    D   W  ++
Sbjct: 462 MRQGQQ-IHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMV 519


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/686 (41%), Positives = 423/686 (61%), Gaps = 5/686 (0%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           +++G+ P+ ++   VL AC  L D   G K+H  ++KLG++ D F A +LL MY + G  
Sbjct: 180 ISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCP 239

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             A  +F ++P  D  SWNA+I+G         AL +L +M    V+    T++S L  C
Sbjct: 240 EAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKAC 299

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A    +  G  +H  ++K  +E + FV   LI+MY+K G+++ A  VFD M  +DV+ WN
Sbjct: 300 AAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWN 359

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           SII+ Y      I A   FT M + G++ +  TL ++    A          VH   ++ 
Sbjct: 360 SIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKS 419

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G +  D  + N+++D Y K  ++  A  VFE  P +D++++ ++IT Y+Q GL  EA+++
Sbjct: 420 G-YQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKM 478

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           +  M++  +I P+   + S+  A +++ A  QG +IH  V+K  L  DVF    LV+MY 
Sbjct: 479 YLRMQD-RDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYA 537

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCG IDDA  +F ++     V W+A+I     HG G KAL  F QML  G+ P+HIT VS
Sbjct: 538 KCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVS 597

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L+AC+H+GLV+E +R+F +M++ FGI P  +HY CMVD+ GR G L  A   ++ MP +
Sbjct: 598 VLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQ 657

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
             A++WGALLGA RIH N+ELG  A++ L  ++ E  G ++L++NIYA+ G W+ V +VR
Sbjct: 658 ASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVR 717

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              ++  +KK PG S IE+ +KV  F  G+R+HP+ ++IY +L +L  ++ S GYVP   
Sbjct: 718 RSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIE 777

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
             L DVE+ EKE +L  HSE+LA+AFG+I++PP +PI++ KNLRVC DCH   KFIS++ 
Sbjct: 778 TDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVA 837

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            REIIVRD NRFHHF+DG CSCGDYW
Sbjct: 838 SREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 154/532 (28%), Positives = 259/532 (48%), Gaps = 60/532 (11%)

Query: 34  FPPVL---KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +P +L    A +++  G  IH  +++LG    + +   L+++Y +     VARKL  D  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRLGL---LGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI----- 145
             D  SW+A+ISGY Q+G   EAL    EM L G   +  T +S+L  C+ + N+     
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 146 ---------------------LS--------------GLLIHLYIVKHGLEFNLFVSNNL 170
                                LS              G+ +H Y++K G + + F +N L
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA--YEQSNDPITAHGFFTTMQQAGIQP 228
           ++MYAK G    A+ VF ++ + D+VSWN++IA     + ND   A      M    + P
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND--LALKLLGKMGSYRVAP 287

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACA 287
            + TL S     A +   +  R +H  +M+    ME D  +G  ++DMY+K G++  A  
Sbjct: 288 SMFTLSSALKACAAIGLVKLGRQLHSALMKMD--MEPDSFVGVGLIDMYSKCGLLQDARM 345

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF+ +P KDVI WN++I+GY+  G   EA+ +F  M +   +  NQ T  +IL   S  G
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYK-EGLEFNQTTLSTILK--STAG 402

Query: 348 ALRQGI--KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +   G   ++H   IK+   +D +VA  L+D YGKC  ++DA  +F   P    V + ++
Sbjct: 403 SQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSM 462

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I+ +  +G G++AL  + +M D  ++PD   F SL  AC++     +G++  H+   + G
Sbjct: 463 ITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ-IHVHVLKCG 521

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +   +     +V+++ + G +  A      +  R   S W A++G    HG+
Sbjct: 522 LLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQHGH 572



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y  +L  ++    +  G+ IHAR+I+      + +   LV++Y KC     A  L     
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               V W+A+IS +  +G+G++AL  + +M   G + +  TF S+L  CS +  +  G++
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 456 YFH----------------------------MMQEEFGIKPH--LKHYG---------CM 476
                                          +  E +G+K H  L   G          +
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +D++ ++G    A      +P +PD   W A++  C +H   +L 
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLA 273


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/708 (39%), Positives = 419/708 (59%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +IS   + G   +A++ F +  L   L+PD  T   +L AC +   L+ GK+ H   +K 
Sbjct: 343  LISGLSQQGYSDKALELFKKMCLDC-LKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA 401

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G   D+ +  +LL +Y +      A + F      +   WN M+  Y    N  E+  I 
Sbjct: 402  GMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIF 461

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++EG+  +  T  SIL  C+    +  G  IH  ++K G +FN++VS+ LI+MYAK 
Sbjct: 462  TQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKL 521

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G + HAL++F ++ E+DVVSW ++IA Y Q      A   F  MQ  GI  D +   S  
Sbjct: 522  GKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAI 581

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A +      + +H      G + +D+ +GNA+V +YA+ G +  A   F+ +  KD 
Sbjct: 582  SACAGIQALNQGQQIHAQACVSG-YSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN 640

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ISWN+LI+G+AQ+G   EA+ +F  M +  +   N  T+   + A ++V  ++ G +IHA
Sbjct: 641  ISWNSLISGFAQSGHCEEALSLFSQMSKAGQ-EINSFTFGPAVSAAANVANVKLGKQIHA 699

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +IK     +  V+  L+ +Y KCG IDDA   F+++P  + + WNA+++ +  HG G K
Sbjct: 700  MIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFK 759

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL+ F  M   GV P+H+TFV +L+ACSH GLV EG +YF  M+E  G+ P  +HY C+V
Sbjct: 760  ALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVV 819

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GR+G L  A  F++ MP++PDA +   LL AC +H N+++G  A+  L E++ ++  
Sbjct: 820  DLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSA 879

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SN+YA  GKW   D  R + +DRG+KK PG S IEVNN V  F+ G++ HP  +K
Sbjct: 880  TYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDK 939

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            IY+ LR+L       GY+P  + +L D E  +K      HSE+LAIAFG++S    +PI 
Sbjct: 940  IYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIH 999

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +FKNLRVCGDCHNW K++S+I++R I+VRDS RFHHFK GICSC DYW
Sbjct: 1000 VFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 264/515 (51%), Gaps = 8/515 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLKLGFEWDVF 64
           G+++  V   ++  L   ++PD  T+  VL+ C          +KIH   +  G+E  +F
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLF 206

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           V   L+ +Y + G  N A+K+FD +  RDS SW AM+SG  QSG   EA+ +  +M   G
Sbjct: 207 VCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSG 266

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           V   P   +S+L  C + +    G  +H  ++K G     +V N L+ +Y++ G    A 
Sbjct: 267 VYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAE 326

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +VF+ M++RD VS+NS+I+   Q      A   F  M    ++PD +T+ SL S  + + 
Sbjct: 327 QVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVG 386

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                +  H + ++ G    D+I+  A++D+Y K   I +A   F     ++V+ WN ++
Sbjct: 387 ALLVGKQFHSYAIKAG-MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVML 445

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
             Y      +E+ ++F  M +   I PNQ TY SIL   S + A+  G +IH +V+K   
Sbjct: 446 VAYGLLDNLNESFKIFTQM-QMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF 504

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
            F+V+V++ L+DMY K G++D A+ +F ++     V W A+I+ +  H +  +ALN F++
Sbjct: 505 QFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKE 564

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M D+G+  D+I F S ++AC+    +++GQ+  H      G    L     +V L+ R G
Sbjct: 565 MQDQGIHSDNIGFASAISACAGIQALNQGQQ-IHAQACVSGYSDDLSVGNALVSLYARCG 623

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            +  A+ F  +     D   W +L+      G+ E
Sbjct: 624 KVRDAY-FAFDKIFSKDNISWNSLISGFAQSGHCE 657



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 249/503 (49%), Gaps = 10/503 (1%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F       G+R +  T+  +L  C +     DG K+H  +LK+GF  +V +   L+ +Y 
Sbjct: 55  FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI 114

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
            FG  + A  +FD+MPVR    WN ++  +     A   L +   M  E V  D  T A 
Sbjct: 115 AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAG 174

Query: 135 ILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           +L  C   D     +  IH   + HG E +LFV N LI++Y K G +  A +VFD + +R
Sbjct: 175 VLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKR 234

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D VSW ++++   QS     A   F  M  +G+ P      S+ S   ++   +    +H
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G ++++G+ +E  +  NA+V +Y++LG    A  VF  +  +D +S+N+LI+G +Q G +
Sbjct: 295 GLVLKQGFSLETYVC-NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYS 353

Query: 314 SEAIEVFQMM-EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
            +A+E+F+ M  +C  + P+  T  S+L A S VGAL  G + H+  IK  +  D+ +  
Sbjct: 354 DKALELFKKMCLDC--LKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEG 411

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+D+Y KC  I  A   F      + V WN ++  +G+    +++   F QM  EG+ P
Sbjct: 412 ALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEP 471

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           +  T+ S+L  CS    V  G++  H    + G + ++     ++D++ + G L  A   
Sbjct: 472 NQFTYPSILRTCSSLRAVDLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 493 IQNMPVRPDASIWGALLGACRIH 515
            + +  + D   W A++     H
Sbjct: 531 FRRLKEK-DVVSWTAMIAGYAQH 552



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 194/428 (45%), Gaps = 17/428 (3%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
            A+   Y         ++ L  M   GV  +  T   +L  C  S     G  +H  I+K
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            G    + +   L+++Y  FG +  A+ VFD+M  R +  WN ++  +          G 
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS-------RSVHGFIMRRGWFMEDVIIGN 270
           F  M Q  ++PD  T   +      L  C            +H   +  G +   + + N
Sbjct: 157 FRRMLQEKVKPDERTYAGV------LRGCGGGDVPFHCVEKIHARTITHG-YENSLFVCN 209

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++D+Y K G +NSA  VF+GL  +D +SW  +++G +Q+G   EA+ +F  M     + 
Sbjct: 210 PLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSG-VY 268

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P    + S+L A + V   + G ++H  V+K     + +V   LV +Y + G    A  +
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQV 328

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  + +   V +N++IS     G  DKAL  F++M  + ++PD +T  SLL+ACS  G +
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             G++ FH    + G+   +   G ++DL+ +   +  AH F  +     +  +W  +L 
Sbjct: 389 LVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLV 446

Query: 511 ACRIHGNM 518
           A  +  N+
Sbjct: 447 AYGLLDNL 454



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 3/220 (1%)

Query: 301 NTLIT-GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           NT ++  Y+ +   +  I    +MEE   +  N  TY+ +L      G    G K+H ++
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEE-RGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKI 94

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K   C +V +   L+D+Y   G +D A+++F ++P      WN ++          + L
Sbjct: 95  LKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVL 154

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             FR+ML E V+PD  T+  +L  C    +        H      G +  L     ++DL
Sbjct: 155 GLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDL 214

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           + + G L  A      +  R D+  W A+L      G  E
Sbjct: 215 YFKNGFLNSAKKVFDGLQKR-DSVSWVAMLSGLSQSGCEE 253


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/708 (41%), Positives = 426/708 (60%), Gaps = 7/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
            M+S Y + G   E++  F +     G+  + YTF  +LK    L    + K+IH  V KL
Sbjct: 524  MMSEYAKIGDYRESIYLFKKMQ-KLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKL 582

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            GF     V  SL+  Y + G  + A KLFD++  RD  SWN+MISG   +G +  AL+  
Sbjct: 583  GFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFF 642

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M +  V +D  T+ + +  CA   ++  G  +H   VK      +  +N L++MY+K 
Sbjct: 643  VQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKC 702

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A++ F++M ++ VVSW S+IAAY +      A   F  M+  G+ PD+ ++ S+ 
Sbjct: 703  GNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVL 762

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
               A  N     R VH +I R+      + + NA++DMYAK G +  A  VF  +PVKD+
Sbjct: 763  HACACGNSLDKGRDVHNYI-RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDI 821

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +SWNT+I GY++N L +EA+++F  M++  E  P+  T   +LPA   + AL  G  IH 
Sbjct: 822  VSWNTMIGGYSKNSLPNEALKLFAEMQK--ESRPDGITMACLLPACGSLAALEIGRGIHG 879

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +++N    ++ VA  L+DMY KCG +  A  LF  +P    + W  +IS  G+HG G++
Sbjct: 880  CILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNE 939

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A+  F++M   G++PD ITF S+L ACSHSGL++EG  +F+ M  E  ++P L+HY CMV
Sbjct: 940  AIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMV 999

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL  R G+L  A+N I+ MP++PDA+IWGALL  CRIH ++EL    ++ +FE++ +N G
Sbjct: 1000 DLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAG 1059

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YYVL++NIYA   KWE V ++R     RGLKK+PG S IEV  K   F + +  HP+ + 
Sbjct: 1060 YYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKS 1119

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I+  L NL  KMK+ G+ P   + L +  + EKE  L  HSE+LA+AFGI++ P    I+
Sbjct: 1120 IFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIR 1179

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCH   KF+S+ T REII+RDSNRFHHFKDG CSC D+W
Sbjct: 1180 VAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 253/520 (48%), Gaps = 14/520 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           I  +   G L  AV+   + +  S L  D   +  +L+ C   + L +GK +H  +   G
Sbjct: 425 ICKFCEVGDLRNAVE-LLRMSQKSEL--DLNAYSSILQLCAEHKCLQEGKMVHSVISSNG 481

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDI 116
              +  + A L+ MY   G     R++FD + + D+    WN M+S Y + G+  E++ +
Sbjct: 482 IPIEGVLGAKLVFMYVSCGALREGRRIFDHI-LSDNKVFLWNLMMSEYAKIGDYRESIYL 540

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M+  G++ +  T + IL   A    +     IH  + K G      V N+LI  Y K
Sbjct: 541 FKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFK 600

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A ++FD++ +RDVVSWNS+I+    +    +A  FF  M    +  DL TLV+ 
Sbjct: 601 SGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNS 660

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A +      R++HG  + +  F  +V+  N ++DMY+K G +N A   FE +  K 
Sbjct: 661 VAACANVGSLSLGRALHGQGV-KACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT 719

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW +LI  Y + GL  +AI +F  ME    ++P+  +  S+L A +   +L +G  +H
Sbjct: 720 VVSWTSLIAAYVREGLYDDAIRLFYEMES-KGVSPDVYSMTSVLHACACGNSLDKGRDVH 778

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             + KN +   + V+  L+DMY KCG +++A  +F Q+P    V WN +I  +  +   +
Sbjct: 779 NYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPN 838

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F +M  E  RPD IT   LL AC     +  G R  H      G    L     +
Sbjct: 839 EALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG-RGIHGCILRNGYSSELHVANAL 896

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +D++ + G L  A      +P + D   W  ++  C +HG
Sbjct: 897 IDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMHG 935



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 210/417 (50%), Gaps = 11/417 (2%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIHLYIV 156
           N  I  +C+ G+   A+++L   R+   S +D    +SIL +CA    +  G ++H  I 
Sbjct: 422 NTKICKFCEVGDLRNAVELL---RMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVIS 478

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAH 215
            +G+     +   L+ MY   G +R   R+FD ++ +  V  WN +++ Y +  D   + 
Sbjct: 479 SNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  MQ+ GI  +  T   +    A L      + +HG + + G+   + ++ N+++  
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV-NSLIAT 597

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQG 334
           Y K G ++SA  +F+ L  +DV+SWN++I+G   NG +  A+E F QM+     +  +  
Sbjct: 598 YFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML--ILRVGVDLA 655

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T V+ + A ++VG+L  G  +H + +K C   +V     L+DMY KCG ++DA+  F ++
Sbjct: 656 TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            + + V W ++I+ +   G  D A+  F +M  +GV PD  +  S+L AC+    + +G 
Sbjct: 716 GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG- 774

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           R  H    +  +   L     ++D++ + G +  A+     +PV+ D   W  ++G 
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/706 (40%), Positives = 433/706 (61%), Gaps = 7/706 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK---ACRNLVDGKKIHCSVLKL 57
            ++S Y + G   E+V  F +     G+  + YTF  VLK   A   + + K++H  VLKL
Sbjct: 441  LMSEYAKIGNFRESVSLFKKMQ-KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL 499

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            GF  +  V  SL+  Y +FG    A  LFD++   D  SWN+MI+G   +G +   L+I 
Sbjct: 500  GFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF 559

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M + GV +D  T+ S+L   A   N+  G  +H + VK      +  SN L++MY+K 
Sbjct: 560  IQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC 619

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A  VF +M +  +VSW S IAAY +      A G F  MQ  G++PD+ T+ S+ 
Sbjct: 620  GNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIV 679

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
               A  +     R VH ++++ G    ++ + NA+++MYAK G +  A  VF  +PVKD+
Sbjct: 680  HACACSSSLDKGRDVHSYVIKNG-MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI 738

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +SWNT+I GY+QN L +EA+E+F  M++  +  P+  T   +LPA + + AL +G +IH 
Sbjct: 739  VSWNTMIGGYSQNSLPNEALELFLDMQK--QFKPDDITMACVLPACAGLAALDKGREIHG 796

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +++     D+ VA  LVDMY KCG +  A  LF  +P+   + W  +I+ +G+HG G++
Sbjct: 797  HILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNE 856

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A++ F +M   G+ PD  +F  +L ACSHSGL++EG ++F+ M+ E G++P L+HY C+V
Sbjct: 857  AISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVV 916

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL  R G+L  A+ FI++MP++PD +IWG LL  CRIH +++L    ++ +FE++ +N  
Sbjct: 917  DLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTR 976

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YYV+++N+YA   KWE V ++R   + RG K+ PG S IEV  K +IF  GN  HP+ ++
Sbjct: 977  YYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKR 1036

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I   LR LT +M++  Y     +VL + ++ EKE I   HSE+ A+AFGI++ PP   ++
Sbjct: 1037 IDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVR 1096

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
            + KN RVCGDCH   KF+S+ T+REI++RDSNRFHHFKDG+CSC D
Sbjct: 1097 VSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 154/549 (28%), Positives = 272/549 (49%), Gaps = 17/549 (3%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           I+ +   G L  A++     T +        ++  VL+ C   ++L DGK++H  ++  G
Sbjct: 343 INKFCEMGDLRNAIELL---TKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNG 399

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              D  + A L+ MY   G     RK+FD +       WN ++S Y + GN  E++ +  
Sbjct: 400 ISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 459

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M+  GV  +  T   +L   A    +     +H Y++K G   N  V N+LI  Y KFG
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  +FD++ E DVVSWNS+I     +         F  M   G++ DL TLVS+  
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A + +    R++HGF + +  F E+V+  N ++DMY+K G +N A  VF  +    ++
Sbjct: 580 AWANIGNLSLGRALHGFGV-KACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIV 638

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW + I  Y + GL S+AI +F  M+    + P+  T  SI+ A +   +L +G  +H+ 
Sbjct: 639 SWTSTIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           VIKN +  ++ V   L++MY KCG +++A  +F ++P    V WN +I  +  +   ++A
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC-M 476
           L  F  M  +  +PD IT   +L AC+    + +G+  + H+++  +    H+    C +
Sbjct: 758 LELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHV---ACAL 813

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH--GNMELGAVASDRLFEVDSE 534
           VD++ + G L +A      +P + D   W  ++    +H  GN  +      R+  ++ +
Sbjct: 814 VDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 872

Query: 535 NVGYYVLMS 543
              + V+++
Sbjct: 873 ESSFSVILN 881


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/680 (41%), Positives = 417/680 (61%), Gaps = 17/680 (2%)

Query: 40  ACRNLVDGKKIHCSVLKLG-FEWDVFV-----------AASLLHMYCRFGLANV--ARKL 85
            C +L +G++I   V     F W++ +           + SL       G+  V  ARKL
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL 207

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD++  RD  SWN+MISGY  +G + + LD+ ++M L G++ D  T+ S++  C+ +  +
Sbjct: 208 FDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGML 267

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           L G  +H Y +K      L ++N L++MY+K G +  A++VF+ M ER VVSW S+IA Y
Sbjct: 268 LLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGY 327

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            +      +   F  M++ GI PD+ T+ ++    A      N + VH +I +      D
Sbjct: 328 AREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI-KENKMQSD 386

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           + + NA++DMYAK G +  A +VF  + VKD++SWNT+I GY++N L +EA+ +F  M+ 
Sbjct: 387 LFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY 446

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            ++  PN  T   ILPA + + AL +G +IH  +++N    D  VA  LVDMY KCG + 
Sbjct: 447 NSK--PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 504

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A  LF  +P    V W  +I+ +G+HG G +A+  F +M + G+ PD ++F+S+L ACS
Sbjct: 505 LARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 564

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           HSGL+ EG  +F+MM+    I+P  +HY C+VDL  RAG+L  A+ FI+ MP+ PDA+IW
Sbjct: 565 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 624

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
           GALL  CRI+ +++L    ++ +FE++ EN GYYVL++NIYA   KWE V ++R     R
Sbjct: 625 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRR 684

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GL+K PG S IE+  KV IF TG+ +HP   KI   L+    +MK  G+ P   + L   
Sbjct: 685 GLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKA 744

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           ++ EKE  L  HSE++A+AFGI+S PP   +++ KNLRVCGDCH   KF+S++ +R+II+
Sbjct: 745 DDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIIL 804

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RDSNRFHHFKDG CSC  +W
Sbjct: 805 RDSNRFHHFKDGSCSCRGHW 824



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 240/503 (47%), Gaps = 62/503 (12%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
            V+++L H     G + +  +  D   + D   +N  I  +C+ GN   A++++++    
Sbjct: 42  LVSSNLYHSCATIGTSVLPSETID-CKITD---YNIEICRFCELGNLRRAMELINQSPKP 97

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            + +   T  S+L +CA   +I  G  IH  I  + +E +  + + L+ MY   G +R  
Sbjct: 98  DLELR--TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREG 155

Query: 184 LRV-------------------------------------------------FDQMMERD 194
            R+                                                 FD++ +RD
Sbjct: 156 RRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRD 215

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           V+SWNS+I+ Y  +         F  M   GI  DL T+VS+ +  +        R++HG
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHG 275

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           + ++   F +++ + N ++DMY+K G +NSA  VFE +  + V+SW ++I GYA+ GL+ 
Sbjct: 276 YAIKAS-FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSD 334

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
            ++ +F  ME+   I+P+  T  +IL A +  G L  G  +H  + +N +  D+FV+  L
Sbjct: 335 MSVRLFHEMEK-EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNAL 393

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KCG + DA S+F ++     V WN +I  +  +   ++ALN F +M     +P+ 
Sbjct: 394 MDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNS 452

Query: 435 ITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
           IT   +L AC+    +  GQ  + H+++  F +  H+ +   +VD++ + G LG+A    
Sbjct: 453 ITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLARLLF 510

Query: 494 QNMPVRPDASIWGALLGACRIHG 516
             +P + D   W  ++    +HG
Sbjct: 511 DMIPEK-DLVSWTVMIAGYGMHG 532



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 183/378 (48%), Gaps = 38/378 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y R G    +V  F++     G+ PD +T   +L AC     L +GK +H  + + 
Sbjct: 323 MIAGYAREGLSDMSVRLFHEME-KEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN 381

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D+FV+ +L+ MY + G    A  +F +M V+D  SWN MI GY ++    EAL++ 
Sbjct: 382 KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLF 441

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+      + IT+A ILP CA    +  G  IH +I+++G   +  V+N L++MY K 
Sbjct: 442 VEMQYNSKP-NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 500

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD + E+D+VSW  +IA Y        A   F  M+ +GI+PD ++ +S+ 
Sbjct: 501 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI- 559

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIINSAC 286
                L  C      H  ++  GW   +++  N            +VD+ A+ G ++ A 
Sbjct: 560 -----LYACS-----HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAY 609

Query: 287 AVFEGLPVK-DVISWNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILP 341
              + +P++ D   W  L+ G   Y    LA +  E VF++  E      N G YV +  
Sbjct: 610 KFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPE------NTGYYVLLAN 663

Query: 342 AYSHVGALRQGIKIHARV 359
            Y+      +  K+  R+
Sbjct: 664 IYAEAEKWEEVKKLRERI 681



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 123/281 (43%), Gaps = 40/281 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y +    +EA++ F +    S  +P+  T   +L AC +L     G++IH  +L+ 
Sbjct: 424 MIGGYSKNSLPNEALNLFVEMQYNS--KPNSITMACILPACASLAALERGQEIHGHILRN 481

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D  VA +L+ MY + G   +AR LFD +P +D  SW  MI+GY   G   EA+   
Sbjct: 482 GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAF 541

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN-------- 169
           +EMR  G+  D ++  SIL  C+      SGLL        G  F   + NN        
Sbjct: 542 NEMRNSGIEPDEVSFISILYACSH-----SGLL------DEGWGFFNMMRNNCCIEPKSE 590

Query: 170 ----LINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND-----PITAHGFFT 219
               ++++ A+ G +  A +    M +E D   W +++      +D      +  H F  
Sbjct: 591 HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFEL 650

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
             +  G        V L +I A+       + +   I RRG
Sbjct: 651 EPENTGY------YVLLANIYAEAEKWEEVKKLRERIGRRG 685


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/709 (39%), Positives = 435/709 (61%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y++ GR  E ++ F     +  L  D  +    LKAC + +D   G +I  S ++ 
Sbjct: 101 MLCGYLQSGRYRETLELF-GLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEK 159

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E + FV +S++    +FG    A+++FD MP +D   WN++I GY Q+G    A  + 
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF 219

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G+   PIT+ S++  C    N+  G  +H Y++  GL  ++ V  + ++MY+K 
Sbjct: 220 FEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKM 279

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M  R++VSWN++I+   ++     +   F  + ++    DL T+VSL 
Sbjct: 280 GDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLL 339

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +Q       + +HG  +R   F  ++I+  A+VD+Y+K G +  A  VF  +  ++V
Sbjct: 340 QGCSQTASLATGKILHGCAIRS--FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNV 397

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  ++ G AQNG A +A+ +F  M+E   I  N  T+VS++ + +H+G+L++G  IH 
Sbjct: 398 ITWTAMLVGLAQNGHAEDALRLFAQMQE-EGIAANSVTFVSLVHSCAHLGSLKRGRSIHG 456

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGD 416
            + +    FD+   T LVDMY KCG+I+ A  +F     S  V  WN++I+ +G+HG G 
Sbjct: 457 HLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGY 516

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  + +M++EG++P+  TF+SLL+ACSHS LV +G   F+ M+ +  I+P  KHY C+
Sbjct: 517 QAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACL 576

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG    A   I+ MP +P  ++  ALL  CR H N+ LG   SD+L  +D+ N 
Sbjct: 577 VDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNP 636

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y+++SNIYA   +W+ VD +R L R+RGLKKTPG+S +E  N V  F+ G+ +HP +E
Sbjct: 637 GIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWE 696

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY  L +L + +++ GYVPD S VL+DV+E+ K  +L  HSERLAIAFG++++P  S I
Sbjct: 697 EIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLI 756

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCH  TK+IS+I +REIIVRD+NRFHHF +G CSCGDYW
Sbjct: 757 RITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/479 (29%), Positives = 244/479 (50%), Gaps = 4/479 (0%)

Query: 39  KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           ++ +NL+  K  H  ++      D FVA  L+  Y        AR +FD          N
Sbjct: 40  ESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCN 99

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           AM+ GY QSG   E L++   MR   + +D  +    L  CA S +   G+ I    V+ 
Sbjct: 100 AMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEK 159

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G+E N FV +++I+   KFG +  A RVFD M  +DVV WNSII  Y Q+     A   F
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF 219

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M  +GI+P  +T+ SL      + + +  + +HG+++  G    D+++  + VDMY+K
Sbjct: 220 FEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLG-LGNDILVLTSFVDMYSK 278

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
           +G I SA  VF  +P ++++SWN +I+G  +NGL  E+ ++F  +   +    +  T VS
Sbjct: 279 MGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG-GFDLTTIVS 337

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +L   S   +L  G  +H   I++    ++ ++T +VD+Y KCG +  A  +F ++   +
Sbjct: 338 LLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRN 396

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            + W A++     +G  + AL  F QM +EG+  + +TFVSL+ +C+H G +  G R  H
Sbjct: 397 VITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG-RSIH 455

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
                 G    + +   +VD++ + G + +A     +  +  D  +W +++    +HG+
Sbjct: 456 GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGH 514


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/498 (52%), Positives = 354/498 (71%), Gaps = 1/498 (0%)

Query: 27  LRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKL 85
           LRPD +TFPP+++A        + H   L+LG    +VF + SL+H Y RFG    A ++
Sbjct: 65  LRPDSFTFPPLVRAAPGPASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRV 124

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+MP RD  +WNAM+SG C++  AV+A+ +   M  EGV+ D +T++S+LP+C    + 
Sbjct: 125 FDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDR 184

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
              L++H+Y VK GL   LFV N LI++Y K GM+  A  VF  M  RD+V+WNSII+AY
Sbjct: 185 ALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAY 244

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
           EQ      A   F  M ++G+ PD+LTLVSL S VAQ  D R ++SVH ++ RRGW + D
Sbjct: 245 EQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGD 304

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +I GNAVVDMYAKL  I++A  VF+ LP +DV+SWNTLITGY QNGL++EA+ ++  M+ 
Sbjct: 305 IIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQN 364

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              + P QGT+VSILPAYS++GAL+QG+++HA  IK  L  DV+V+TCL+D+Y KCG++ 
Sbjct: 365 HEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLV 424

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +AM LF  +PR S+ PWNAII+  G+HG G KALN F QM  EG++PD++TFVSLL ACS
Sbjct: 425 EAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACS 484

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GLV +G+ +F +MQ  +GI P  KHY CMVD+ GRAG L  A  FIQ MP++PD+++W
Sbjct: 485 HAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVW 544

Query: 506 GALLGACRIHGNMELGAV 523
           GALLGACRIHGN+EL A+
Sbjct: 545 GALLGACRIHGNVELAAI 562



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 21/217 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I+ Y++ G  +EAV  +       GL+P   TF  +L A  N   L  G ++H   +K 
Sbjct: 342 LITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKT 401

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V+  L+ +Y + G    A  LF+ MP R +G WNA+I+G    G+  +AL++ 
Sbjct: 402 GLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLF 461

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLY----IVKHGLEFNLFVSN 168
            +M+ EG+  D +T  S+L  C+ +  +  G     L+  +Y    I KH          
Sbjct: 462 SQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH--------YA 513

Query: 169 NLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            +++M  + G +  A      M ++ D   W +++ A
Sbjct: 514 CMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGA 550


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/709 (41%), Positives = 424/709 (59%), Gaps = 28/709 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+  L   + P+ YTFP  LKAC  L D   G+ IH   +  G + D+FV+ +LL MY 
Sbjct: 112 LYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYV 171

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITV 132
           +      A  +F  MP RD  +WNAM++GY   G    A+  L  M+++   + P   T+
Sbjct: 172 KCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 231

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFN----------LFVSNNLINMYAKFGMMRH 182
            ++LP+ A+   +  G  +H Y ++  L  N          + +   L++MYAK G + +
Sbjct: 232 VALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 291

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A RVFD M  R+ V+W+++I  +   +    A   F  M   G     L  +S TSI + 
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG-----LCFLSPTSIASA 346

Query: 243 LNDC------RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           L  C      R    +H  + + G    D+  GN+++ MYAK G+I+ A A+F+ + VKD
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKD 405

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S++ L++GY QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+ G   H
Sbjct: 406 TVSYSALVSGYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             VI   L  +  +   L+DMY KCGRID +  +F  +P    V WN +I+ +GIHG G 
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A   F +M + G  PD +TF+ LL+ACSHSGLV EG+ +FH+M+  +G+ P ++HY CM
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  R G L  A+ FIQ+MP+R D  +W ALLGACR++ N++LG   S  + E+  E  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G +VL+SNIY+  G+++   EVR + + +G KK+PG S IE+N  +  F  G+++HP+  
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY EL N+   +K LGY PD SFVLQD+EE+EKE  L  HSE+LAIA+GI+S      I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVCGDCH   K IS +  R IIVRD+NRFHHFK+G CSCGD+W
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 228/470 (48%), Gaps = 20/470 (4%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSG--NAVEALDILDEMRLEGVSMDPITVASILPVC 139
           A  LFD +P  D  ++N +I  Y  S    A + L +   M    V+ +  T    L  C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           +   +   G  IH + +  GL+ +LFVS  L++MY K   +  A  +F  M  RD+V+WN
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 200 SIIAAYEQSN--DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           +++A Y          AH     MQ   ++P+  TLV+L  ++AQ        SVH + +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 258 R---------RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           R         +    + V++G A++DMYAK G +  A  VF+ +P ++ ++W+ LI G+ 
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
                ++A  +F+ M        +  +  S L A + +  LR G ++HA + K+ +  D+
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 375

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
                L+ MY K G ID A++LF ++    +V ++A++S +  +G+ ++A   F++M   
Sbjct: 376 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
            V PD  T VSL+ ACSH   +  G R  H      G+         ++D++ + G + +
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           +      MP R D   W  ++    IHG   LG  A+    E++  N+G+
Sbjct: 495 SRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEATALFLEMN--NLGF 538



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 169/358 (47%), Gaps = 21/358 (5%)

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG--FFTTMQQAGIQPDLLTLVS 235
           G +  A  +FDQ+   DV ++N +I AY  S+    A G   +  M +  + P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                + L D    R++H   +  G    D+ +  A++DMY K   +  A  +F  +P +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 296 DVISWNTLITGYAQNGLASEAI-EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+++WN ++ GYA +G+   A+  +  M  + + + PN  T V++LP  +  GAL QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 355 IHARVIKNCLCFD----------VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
           +HA  I+ CL  +          V + T L+DMY KCG +  A  +F  +P  + V W+A
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 405 IISCHGIHGQGDKALNFFRQMLDEG---VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +I    +  +  +A   F+ ML +G   + P  I   S L AC+    +  G++  H + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALL 366

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            + G+   L     ++ ++ +AG +  A      M V+ D   + AL+     +G  E
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAE 423


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/684 (40%), Positives = 412/684 (60%), Gaps = 6/684 (0%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL PD  T   VL  C   VD   G +IH   +KLG   DV V  SL+ MY + G    A
Sbjct: 129 GLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCAR 141
           + LFD    +++ SWN MI G C  G   EA ++  EM++ E + ++ +TV +ILP C  
Sbjct: 189 QMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLE 248

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              + S   +H Y ++HG +++  V+N  +  YAK GM+  A RVF  M  + V SWN++
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I    Q+ DP  A   +  M  +G+ PD  T+ SL    A L   R  + VHGF++R G 
Sbjct: 309 IGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGL 368

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + D  IG +++ +Y   G  +SA  +F+G+  K  +SWN +I+GY+QNGL  +A+ +F+
Sbjct: 369 EI-DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFR 427

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            +   +   P+    VS+L A S   ALR G + H   +K  L  DVFVA   +DMY K 
Sbjct: 428 KLVS-DGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKS 486

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G I ++ S+F  +       WNAII+ +G+HG G++++  F +M   G  PD  TF+ +L
Sbjct: 487 GCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGIL 546

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           T CSH+GLV EG +YF+ MQ   GI+P L+HY C++D+ GRAG L  A   +  MP +PD
Sbjct: 547 TVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPD 606

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           + +W +LL  CR  G +E+G + +++L E++ +NV  YV +SN+YA  G+W+ V  VR +
Sbjct: 607 SRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQM 666

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +D GL+K  G S IE+  KV  F  G+   P+ +++    R L  KM  +GY P+ S V
Sbjct: 667 IKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAV 726

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DV+E++K   L  HSE+LAI FG++++   + ++IFKNLR+C DCHN +KF+S++T R
Sbjct: 727 LHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGR 786

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EII+RD+ RFHHFKDG+CSCGDYW
Sbjct: 787 EIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 288/529 (54%), Gaps = 22/529 (4%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
           S+A+D F +    +    D +TFP V+KAC   +D   G+ IH  V+K+G   DVFV  +
Sbjct: 12  SDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNA 71

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVS 126
           L+ MY +FG  + A K+F  MPVR+  SWN++ISG+ ++G + +  D+L EM    EG+ 
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D  T+ ++LPVCAR  ++  G+ IH   VK GL  ++ V+N+L++MY+K G +  A  +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLND 245
           FD+   ++ VSWN++I           A   F  MQ Q  I+ + +T++++     +++ 
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQ 251

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            R+ + +HG+ +R G F  D ++ N  V  YAK G++  A  VF  +  K V SWN LI 
Sbjct: 252 LRSLKELHGYSIRHG-FQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           G AQNG   +A+ ++  M     + P+  T  S+L A +H+ +LR G ++H  V+++ L 
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLV-PDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLE 369

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            D F+   L+ +Y  CG    A  LF  +   SSV WNA+IS +  +G  + AL  FR++
Sbjct: 370 IDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKL 429

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH---YGC-MVDLFG 481
           + +G +P  I  VS+L ACS    +  G+         + +K  L       C  +D++ 
Sbjct: 430 VSDGFQPSDIAVVSVLGACSQQSALRLGKE-----THCYALKALLMEDVFVACSTIDMYA 484

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           ++G +  + +    +  +  AS W A++ A  +HG+ E     S  LFE
Sbjct: 485 KSGCIKESRSVFDGLKNKDLAS-WNAIIAAYGVHGDGE----ESIELFE 528


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/710 (41%), Positives = 430/710 (60%), Gaps = 11/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA++ +++  L  G+RPD YTFP VL+ C  L D   G+++H  V++ 
Sbjct: 166 LVGGYAKAGYFDEALNLYHRM-LWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV V  +L+ MY + G    AR +FD MP RD  SWNAMISGY ++   +E L + 
Sbjct: 225 GFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   V  D +T+ S++  C    +   G  +H Y++K G    + V+N+LI M++  
Sbjct: 285 FMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSV 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A  VF +M  +D+VSW ++I+ YE++  P  A   +T M+  G+ PD +T+ S+ 
Sbjct: 345 GCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L        +H F  R G     VI+ N+++DMY+K   I+ A  VF  +P K+V
Sbjct: 405 SACAGLGLLDKGIMLHEFADRTG-LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNV 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISW ++I G   N  + EA+  FQ M     + PN  T VS+L A + +GAL  G +IHA
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSCGKEIHA 521

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  L FD F+   L+DMY +CGR++ A + F    +  +  WN +++ +   G+G  
Sbjct: 522 HALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVA-SWNILLTGYAQQGKGGL 580

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M++  V PD ITF SLL ACS SG+V++G  YF  M+ +F I P+LKHY  +V
Sbjct: 581 AVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVV 640

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A+ FI+ MP+ PD +IWGALL ACRI+ N+ELG +A+  +FE+D+++VG
Sbjct: 641 DLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVG 700

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+ N+YA+ GKW+ V  VR + R+  L   PG S +EV  +V  F TG+  HP+ ++
Sbjct: 701 YYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKE 760

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L     KM++ G    K     D++  + E I   HSERLAIAFG+I++ P +PI 
Sbjct: 761 INAVLEGFYEKMEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIW 819

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD--YW 705
           + KNL +C +CHN  KFIS++  R I VRD+ +FHHFKDG+CSCGD  YW
Sbjct: 820 VTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 272/504 (53%), Gaps = 11/504 (2%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T+  +L+ C   R   +G ++H  V K      V +  +LL M+ RFG    A  +F  M
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             RD  SWN ++ GY ++G   EAL++   M   G+  D  T   +L  C    ++  G 
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +HL+++++G E ++ V N LI MY K G +  A  VFD+M  RD +SWN++I+ Y +++
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
             +     F  M++  + PDL+T+ S+ S    L D R  R VHG++++ G F+ +V + 
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG-FVAEVSVN 334

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N+++ M++ +G  + A  VF  +  KD++SW  +I+GY +NGL  +A+E + +ME    +
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH-EGV 393

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  S+L A + +G L +GI +H    +  L   V VA  L+DMY KC  ID A+ 
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F+++P  + + W +II    ++ +  +AL FF+QM+   ++P+ +T VS+L+AC+  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGA 512

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +S G+  + H ++   G    L +   ++D++ R G +  A N  Q      D + W  L
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWN--QFNSCEKDVASWNIL 568

Query: 509 LGACRIHGNMELGAVASDRLFEVD 532
           L      G   L      ++ E D
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESD 592



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 16/504 (3%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N++I   C  G+  +AL  LD M+   VS++  T  ++L +C        G  +H Y+ K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
                 + + N L++M+ +FG +  A  VF +M ERD+ SWN ++  Y ++     A   
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M   GI+PD+ T   +      L D    R VH  ++R G F  DV + NA++ MY 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYV 241

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I SA  VF+ +P +D ISWN +I+GY +N +  E + +F MM E   ++P+  T  
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF-VDPDLMTMT 300

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S++ A   +G  R G ++H  VIK     +V V   L+ M+   G  D+A  +F ++   
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             V W A+IS +  +G  +KA+  +  M  EGV PD IT  S+L+AC+  GL+ +G    
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG---- 416

Query: 458 HMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            +M  EF  +  L  Y      ++D++ +   +  A      +P +   S    +LG   
Sbjct: 417 -IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
            + + E        +  +   +V    ++S   A +G      E+ + A   GL    G+
Sbjct: 476 NYRSFEALFFFQQMILSLKPNSVTLVSVLSAC-ARIGALSCGKEIHAHALRTGL----GF 530

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEK 597
                N  +D++    R  P + +
Sbjct: 531 DGFLPNALLDMYVRCGRMEPAWNQ 554


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 299/747 (40%), Positives = 450/747 (60%), Gaps = 56/747 (7%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E V   Y+     G RPD YTFP VLKAC  +     G  +H  V   GFEW+VFV   L
Sbjct: 127 EDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGL 186

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSG---SWNAMISGYCQSGNAVEALDILDEMRLE-GV 125
           + MY R G    AR++FD+M  R  G   SWN++++ Y Q G+++ A+ + + M  + G+
Sbjct: 187 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 246

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D +++ ++LP CA       G  +H Y ++ GL  ++FV N +++MYAK GMM  A +
Sbjct: 247 RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANK 306

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ---------------------- 223
           VF++M  +DVVSWN+++  Y Q      A G F  +++                      
Sbjct: 307 VFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGL 366

Query: 224 -------------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM------- 263
                         G +P+++TLVSL S  A      + +  H   ++  W +       
Sbjct: 367 GFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIK--WILNLDENDP 424

Query: 264 -EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVF 320
            +D+++ NA++DMY+K     +A A+F+ +P KD  V++W  LI G AQ+G A+EA+E+F
Sbjct: 425 GDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF 484

Query: 321 -QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMY 378
            QM++  N + PN  T    L A + +GALR G +IHA V++N      +FVA CL+DMY
Sbjct: 485 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMY 544

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            K G +D A  +F  + + + V W ++++ +G+HG+G++AL  F +M    + PD +TFV
Sbjct: 545 SKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFV 604

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L ACSHSG+V +G  YF+ M ++FG+ P  +HY CMVDL  RAG L  A   I+ MP+
Sbjct: 605 VVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPM 664

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +P  ++W ALL ACR++ N+ELG  A+++L E++S N G Y L+SNIYAN   W+ V  +
Sbjct: 665 KPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARI 724

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L ++ G+KK PG S ++       F+ G+ +HP  ++IYD LR+L  ++K+LGYVPD 
Sbjct: 725 RYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDN 784

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
            F L DV+++EK  +L+ HSE+LA+A+GI+++ P +PI+I KNLR CGDCH+   +IS I
Sbjct: 785 RFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISII 844

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            E EIIVRDS+RFHHFK+G CSC  YW
Sbjct: 845 IEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/532 (31%), Positives = 245/532 (46%), Gaps = 60/532 (11%)

Query: 41  CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS--WN 98
           C++L   +  H  +L  G   D      ++ MY  F     A  +   +         WN
Sbjct: 58  CKSLASAELTHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWN 114

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            +I      G   + L +   M+  G   D  T   +L  C    +   G  +H  +   
Sbjct: 115 QLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFAS 174

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAH 215
           G E+N+FV N L++MY + G   +A +VFD+M ER   D+VSWNSI+AAY Q  D I A 
Sbjct: 175 GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAM 234

Query: 216 GFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
             F  M +  GI+PD ++LV++    A +      + VHG+ +R G F EDV +GNAVVD
Sbjct: 235 KMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF-EDVFVGNAVVD 293

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLIT----------------------------- 305
           MYAK G++  A  VFE + VKDV+SWN ++T                             
Sbjct: 294 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 353

Query: 306 ------GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
                 GYAQ GL  EA++VF+ M  C    PN  T VS+L   +  G L  G + H   
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGS-EPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 360 IKNCLCF-------DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCHG 410
           IK  L         D+ V   L+DMY KC     A ++F  +P    S V W  +I  + 
Sbjct: 413 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472

Query: 411 IHGQGDKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIK 467
            HG+ ++AL  F QML  D  V P+  T    L AC+  G +  G Q + ++++  F   
Sbjct: 473 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFE-S 531

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             L    C++D++ ++G +  A     NM  R   S W +L+    +HG  E
Sbjct: 532 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHGRGE 582



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 58/461 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +++ Y++ G    A+  F + T   G+RPD  +   VL AC ++     GK++H   L+ 
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN-------- 109
           G   DVFV  +++ MY + G+   A K+F+ M V+D  SWNAM++GY Q G         
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 110 ---------------------------AVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                        EALD+  +M L G   + +T+ S+L  CA +
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASA 399

Query: 143 DNILSGLLIHLYIVKHGLEF-------NLFVSNNLINMYAKFGMMRHALRVFDQM--MER 193
             +L G   H + +K  L         +L V N LI+MY+K    + A  +FD +   +R
Sbjct: 400 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 459

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRS 251
            VV+W  +I    Q  +   A   F+ M Q    + P+  T+       A+L   R  R 
Sbjct: 460 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 519

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H +++R  +    + + N ++DMY+K G +++A  VF+ +  ++ +SW +L+TGY  +G
Sbjct: 520 IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG 579

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+++F  M++   + P+  T+V +L A SH G + QGI     + K+   F V   
Sbjct: 580 RGEEALQIFYEMQKVXLV-PDGVTFVVVLYACSHSGMVDQGINYFNGMNKD---FGVVPG 635

Query: 372 ----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
                C+VD+  + GR+D+AM L   +P + +   W A++S
Sbjct: 636 AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 676


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/708 (39%), Positives = 414/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +IS + +CG    A+  F +  L SGL PD  T   +L AC    +L  GK++H  +LK 
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQL-SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  +  SLL +Y + G    A ++FD     +   WN M+  Y Q  +  ++ DI 
Sbjct: 274 GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV  +  T   +L  C  +  I  G  IH   +K+G + +++VS  LI+MY+K+
Sbjct: 334 YRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKY 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+ D + E+DVVSW S+IA Y Q      A   F  MQ  GI PD + L S  
Sbjct: 394 GWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAI 453

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +        +H  +   G +  DV I N +V +YA+ GI   A + FE +  K+ 
Sbjct: 454 SACAGIKAVHQGSQIHARVYVSG-YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEG 512

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN LI+G+AQ+GL  EA++VF  M++      N  T+VS + A +++  ++QG +IHA
Sbjct: 513 ITWNGLISGFAQSGLYEEALKVFMKMDQAGA-KYNVFTFVSSISASANLADIKQGKQIHA 571

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RVIK     +  ++  L+ +YGKCG I+DA   F+++ + + V WN II+C   HG+G +
Sbjct: 572 RVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLE 631

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  +G++P  +TFV +LTACSH GLV EG  YF  M  E GI P   HY C+V
Sbjct: 632 ALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVV 691

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A  F++ MP+  D+ +W  LL AC++H N+E+G  A+  L E++  +  
Sbjct: 692 DILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSA 751

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA  GKW   D++R + +DRG++K PG S IEV N V  F+ G+R HP  ++
Sbjct: 752 SYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQ 811

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ L +L  ++  +GY  +   +  + E++ K+     HSE+LA+AFG++S P   P++
Sbjct: 812 IYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLR 871

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH W KF S +  REI++RD  RFHHF +G CSCGDYW
Sbjct: 872 VIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 235/457 (51%), Gaps = 11/457 (2%)

Query: 34  FPPVLKACRNLVDGKK------IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           F   L+ACR    G++      IH   +  G      +   L+ +Y + G    AR++F+
Sbjct: 44  FACALRACRG--SGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFE 101

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
           ++ VRD+ SW A++SGY Q+G   EA+ +  EM   GV   P  ++SIL  C +++    
Sbjct: 102 ELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQL 161

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G LIH+ + K G     FV N LI++Y +    R A RVF  M+  D V++N++I+ + Q
Sbjct: 162 GRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQ 221

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                 A G F  MQ +G+ PD +T+ SL +  + + D R  + +H ++++ G  + D I
Sbjct: 222 CGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSL-DYI 280

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +  +++D+Y K G I  A  +F+     +V+ WN ++  Y Q    +++ ++F  M    
Sbjct: 281 MEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAG 340

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + PN+ TY  +L   +H G +  G +IH+  IKN    D++V+  L+DMY K G +D A
Sbjct: 341 -VRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA 399

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +   +     V W ++I+ +  H    +AL  F++M   G+ PD+I   S ++AC+  
Sbjct: 400 QRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGI 459

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
             V +G +  H      G    +  +  +V L+ R G
Sbjct: 460 KAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCG 495


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/708 (39%), Positives = 417/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS   + G    A+  F +  L   ++PD  T   +L AC ++     GK++H  V+K+
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDC-MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKM 343

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+ +  SLL +Y +      A + F      +   WN M+  Y Q GN  E+  I 
Sbjct: 344 GMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIF 403

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M++EG+  +  T  SIL  C     +  G  IH  ++K G +FN++V + LI+MYAK 
Sbjct: 404 LQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH 463

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +  ++ E DVVSW ++IA Y Q +    A   F  M+  GI+ D +   S  
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAI 523

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +      + +H      G + ED+ IGNA+V +YA+ G    A   FE +  KD 
Sbjct: 524 SACAGIQALNQGQQIHAQSYISG-YSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN 582

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN LI+G+AQ+G   EA++VF  M +   +  N  T+ S + A ++   ++QG +IHA
Sbjct: 583 ISWNALISGFAQSGHCEEALQVFSQMNQAG-VEANLFTFGSAVSATANTANIKQGKQIHA 641

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     +   +  L+ +Y KCG I+DA   F+++P  + V WNA+I+ +  HG G +
Sbjct: 642 MMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSE 701

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M   G+ P+H+TFV +L+ACSH GLV+EG  YF  M +E G+ P  +HY C+V
Sbjct: 702 AVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVV 761

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRA  L  A  FI+ MP+ PDA IW  LL AC +H N+E+G  A+  L E++ E+  
Sbjct: 762 DLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSA 821

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA  GKW+  D  R + +DRG+KK PG S IEV N +  F+ G+R HP  E+
Sbjct: 822 TYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQ 881

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ + +L  +   +GYV D+  +L DVE+++K+     HSE+LA+AFG++S     PI+
Sbjct: 882 IYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIR 941

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCHNW KF+S+I+ R I+VRD+ RFHHF+ G+CSC DYW
Sbjct: 942 VIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/514 (30%), Positives = 265/514 (51%), Gaps = 8/514 (1%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLKLGFEWDVFV 65
           +L+  V   +   +T  + PD  TF  VL+AC          ++IH  ++  GF     V
Sbjct: 90  KLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV 149

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+ +Y + G  ++A+ +F+ + ++DS SW AMISG  Q+G   EA+ +  +M    V
Sbjct: 150 CNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
              P   +S+L  C + +    G  +H +IVK GL    FV N L+ +Y+++G +  A +
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ 269

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F +M  RD +S+NS+I+   Q      A   F  MQ   ++PD +T+ SL S  A +  
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + +H ++++ G    D+II  +++D+Y K   I +A   F     ++V+ WN ++ 
Sbjct: 330 GYKGKQLHSYVIKMG-MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLV 388

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y Q G  SE+  +F  M +   + PNQ TY SIL   + +GAL  G +IH +VIK+   
Sbjct: 389 AYGQLGNLSESYWIFLQM-QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQ 447

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           F+V+V + L+DMY K G +D A  +  ++     V W A+I+ +  H    +AL  F++M
Sbjct: 448 FNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEM 507

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            ++G+R D+I F S ++AC+    +++GQ+  H      G    L     +V L+ R G 
Sbjct: 508 ENQGIRSDNIGFSSAISACAGIQALNQGQQ-IHAQSYISGYSEDLSIGNALVSLYARCGR 566

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
              A+   + +  + + S W AL+      G+ E
Sbjct: 567 AQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCE 599



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 266/524 (50%), Gaps = 20/524 (3%)

Query: 26  GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+R +  T+  + + C N   L+D KK+H  + K GF+ +  + + L+ +Y   G  + A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            KLFDD+P  +   WN +ISG      A + L +   M  E V+ D  T AS+L  C+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 143 DNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
                    IH  I+ HG   +  V N LI++Y+K G +  A  VF+++  +D VSW ++
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+   Q+     A   F  M ++ + P      S+ S   ++   +    +HGFI++ G 
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG- 243

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              +  + NA+V +Y++ G + +A  +F  +  +D IS+N+LI+G AQ G +  A+++F+
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE 303

Query: 322 MME-ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
            M+ +C  + P+  T  S+L A + VGA  +G ++H+ VIK  +  D+ +   L+D+Y K
Sbjct: 304 KMQLDC--MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           C  I+ A   F      + V WN ++  +G  G   ++   F QM  EG+ P+  T+ S+
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L  C+  G +  G++  H    + G + ++     ++D++ + G L  A   +Q +    
Sbjct: 422 LRTCTSLGALDLGEQ-IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EE 479

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFE------VDSENVGY 538
           D   W A++     H   +L A A  +LF+      + S+N+G+
Sbjct: 480 DVVSWTAMIAGYTQH---DLFAEAL-KLFQEMENQGIRSDNIGF 519



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 192/400 (48%), Gaps = 5/400 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+  +  T   +   C  S ++L    +H  I K G +    + + LI++Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTS 238
           + +A+++FD +   +V  WN +I+            G F+ M    + PD  T  S L +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                   + +  +H  I+  G F    ++ N ++D+Y+K G ++ A  VFE L +KD +
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHG-FGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW  +I+G +QNG   EAI +F  M +   I P    + S+L A + +   + G ++H  
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVI-PTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           ++K  L  + FV   LV +Y + G +  A  +F ++ R   + +N++IS     G  D+A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L  F +M  + ++PD +T  SLL+AC+  G   +G++  H    + G+   L   G ++D
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ-LHSYVIKMGMSSDLIIEGSLLD 357

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           L+ +   +  AH +        +  +W  +L A    GN+
Sbjct: 358 LYVKCFDIETAHEYFLTTETE-NVVLWNVMLVAYGQLGNL 396


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/709 (41%), Positives = 423/709 (59%), Gaps = 28/709 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+  L   + P+ YTFP  LKAC  L D   G+ IH   +  G + D+FV+ +LL MY 
Sbjct: 112 LYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYV 171

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITV 132
           +      A  +F  MP RD  +WNAM++GY   G    A+  L  M+++   + P   T+
Sbjct: 172 KCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 231

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFN----------LFVSNNLINMYAKFGMMRH 182
            ++LP+ A+   +  G  +H Y ++  L  N          + +   L++MYAK G + +
Sbjct: 232 VALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 291

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A RVFD M  R+ V+W+++I  +   +    A   F  M   G     L  +S TSI + 
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG-----LCFLSPTSIASA 346

Query: 243 LNDC------RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           L  C      R    +H  + + G    D+  GN+++ MYAK G+I+ A A+F+ + VKD
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKD 405

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S++ L++GY QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+ G   H
Sbjct: 406 TVSYSALVSGYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             VI   L  +  +   L+DMY KCGRID +  +F  +P    V WN +I+ +GIHG G 
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A   F +M + G  PD +TF+ LL+ACSHSGLV EG+ +FH+M   +G+ P ++HY CM
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  R G L  A+ FIQ+MP+R D  +W ALLGACR++ N++LG   S  + E+  E  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G +VL+SNIY+  G+++   EVR + + +G KK+PG S IE+N  +  F  G+++HP+  
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY EL N+   +K LGY PD SFVLQD+EE+EKE  L  HSE+LAIA+GI+S      I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVCGDCH   K IS +  R IIVRD+NRFHHFK+G CSCGD+W
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 228/470 (48%), Gaps = 20/470 (4%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSG--NAVEALDILDEMRLEGVSMDPITVASILPVC 139
           A  LFD +P  D  ++N +I  Y  S    A + L +   M    V+ +  T    L  C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           +   +   G  IH + +  GL+ +LFVS  L++MY K   +  A  +F  M  RD+V+WN
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 200 SIIAAYEQSN--DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           +++A Y          AH     MQ   ++P+  TLV+L  ++AQ        SVH + +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 258 R---------RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           R         +    + V++G A++DMYAK G +  A  VF+ +P ++ ++W+ LI G+ 
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
                ++A  +F+ M        +  +  S L A + +  LR G ++HA + K+ +  D+
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 375

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
                L+ MY K G ID A++LF ++    +V ++A++S +  +G+ ++A   F++M   
Sbjct: 376 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
            V PD  T VSL+ ACSH   +  G R  H      G+         ++D++ + G + +
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           +      MP R D   W  ++    IHG   LG  A+    E++  N+G+
Sbjct: 495 SRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEATALFLEMN--NLGF 538



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 169/358 (47%), Gaps = 21/358 (5%)

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG--FFTTMQQAGIQPDLLTLVS 235
           G +  A  +FDQ+   DV ++N +I AY  S+    A G   +  M +  + P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                + L D    R++H   +  G    D+ +  A++DMY K   +  A  +F  +P +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 296 DVISWNTLITGYAQNGLASEAI-EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+++WN ++ GYA +G+   A+  +  M  + + + PN  T V++LP  +  GAL QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 355 IHARVIKNCLCFD----------VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
           +HA  I+ CL  +          V + T L+DMY KCG +  A  +F  +P  + V W+A
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 405 IISCHGIHGQGDKALNFFRQMLDEG---VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +I    +  +  +A   F+ ML +G   + P  I   S L AC+    +  G++  H + 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALL 366

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            + G+   L     ++ ++ +AG +  A      M V+ D   + AL+     +G  E
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAE 423


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/678 (41%), Positives = 418/678 (61%), Gaps = 6/678 (0%)

Query: 32  YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           YT    LKAC +L+D   G +I  + ++ GF   ++V +S+++   + G    A+K+FD 
Sbjct: 146 YTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDG 205

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP +D   WN++I GY Q G   E++ +  EM   G+   P+T+A++L  C +S     G
Sbjct: 206 MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG 265

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +  H Y++  G+  ++FV  +L++MY+  G    A  VFD M  R ++SWN++I+ Y Q+
Sbjct: 266 MCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQN 325

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                ++  F  + Q+G   D  TLVSL    +Q +D  N R +H  I+R+      +++
Sbjct: 326 GMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE-LESHLVL 384

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
             A+VDMY+K G I  A  VF  +  K+VI+W  ++ G +QNG A +A+++F  M+E  +
Sbjct: 385 STAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQE-EK 443

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +  N  T VS++   +H+G+L +G  +HA  I++   FD  + + L+DMY KCG+I  A 
Sbjct: 444 VAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAE 503

Query: 389 SLFY-QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            LF  +      +  N++I  +G+HG G  AL  + +M++E ++P+  TFVSLLTACSHS
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHS 563

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV EG+  FH M+ +  ++P  KHY C+VDL  RAG L  A   ++ MP +P   +  A
Sbjct: 564 GLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEA 623

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL  CR H N  +G   +DRL  +D  N G YV++SNIYA   KWE V+ +R L R +G+
Sbjct: 624 LLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGM 683

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           KK PG+S IEV NKV  F+  + +HP +  IY  L NL  ++++ GY+PD S VL+DV E
Sbjct: 684 KKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNE 743

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
             K  +L  HSERLAIAFG++S+P  S I+I KNLRVC DCHN TK+IS+I +REIIVRD
Sbjct: 744 PMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRD 803

Query: 688 SNRFHHFKDGICSCGDYW 705
           +NRFHHF +G CSC D+W
Sbjct: 804 ANRFHHFVNGKCSCNDFW 821



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 161/607 (26%), Positives = 283/607 (46%), Gaps = 58/607 (9%)

Query: 29  PDFYTFPPVLKA-----CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           P F   P V  +        L+  K IH  ++K     + F+AA L+ +Y   G    AR
Sbjct: 40  PFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHAR 99

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD   + ++   NAMI+G+ ++   +E   +   M    + ++  T    L  C    
Sbjct: 100 NVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLL 159

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +   G+ I    V+ G   +L+V ++++N   K G +  A +VFD M E+DVV WNSII 
Sbjct: 160 DDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIG 219

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y Q      +   F  M   G++P  +T+ +L     Q    +     H +++  G   
Sbjct: 220 GYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALG-MG 278

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            DV +  ++VDMY+ LG   SA  VF+ +  + +ISWN +I+GY QNG+  E+  +F+ +
Sbjct: 279 NDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRL 338

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +      + GT VS++   S    L  G  +H+ +I+  L   + ++T +VDMY KCG 
Sbjct: 339 VQSGS-GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGA 397

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I  A  +F ++ + + + W A++     +G  + AL  F QM +E V  + +T VSL+  
Sbjct: 398 IKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHC 457

Query: 444 CSHSGLVSEGQRY----------------------------FHMMQEEFGIKPHLKHY-- 473
           C+H G +++G+                               H  ++ F  + HLK    
Sbjct: 458 CAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVIL 517

Query: 474 -GCMVDLFGRAGH----LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV---AS 525
              M+  +G  GH    LG+    I+   ++P+ + + +LL AC   G +E G     + 
Sbjct: 518 CNSMIMGYGMHGHGRYALGVYSRMIEE-RLKPNQTTFVSLLTACSHSGLVEEGKALFHSM 576

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           +R  +V  ++  +Y  + ++++  G+ E  DE+        +K+ P   S +V   ++  
Sbjct: 577 ERDHDVRPQH-KHYACLVDLHSRAGRLEEADEL--------VKQMPFQPSTDV---LEAL 624

Query: 586 YTGNRTH 592
            +G RTH
Sbjct: 625 LSGCRTH 631



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 234/445 (52%), Gaps = 21/445 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI----HCSVLK 56
           +I  YV+ G   E++  F +  +  GLRP   T   +LKAC      KK+    H  VL 
Sbjct: 217 IIGGYVQKGLFWESIQMFLEM-IGGGLRPSPVTMANLLKACGQ-SGLKKVGMCAHSYVLA 274

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           LG   DVFV  SL+ MY   G    A  +FD M  R   SWNAMISGY Q+G   E+  +
Sbjct: 275 LGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYAL 334

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              +   G   D  T+ S++  C+++ ++ +G ++H  I++  LE +L +S  +++MY+K
Sbjct: 335 FRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSK 394

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G ++ A  VF +M +++V++W +++    Q+     A   F  MQ+  +  + +TLVSL
Sbjct: 395 CGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSL 454

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-LPVK 295
               A L      R+VH   +R G+   D +I +A++DMYAK G I+SA  +F     +K
Sbjct: 455 VHCCAHLGSLTKGRTVHAHFIRHGYAF-DAVITSALIDMYAKCGKIHSAEKLFNNEFHLK 513

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DVI  N++I GY  +G    A+ V+  M E   + PNQ T+VS+L A SH G + +G  +
Sbjct: 514 DVILCNSMIMGYGMHGHGRYALGVYSRMIE-ERLKPNQTTFVSLLTACSHSGLVEEGKAL 572

Query: 356 HARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHG 410
              + ++    DV        CLVD++ + GR+++A  L  Q+P + S+    A++S   
Sbjct: 573 FHSMERD---HDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCR 629

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHI 435
            H    K  N   Q+ D  +  D++
Sbjct: 630 TH----KNTNMGIQIADRLISLDYL 650


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/698 (41%), Positives = 419/698 (60%), Gaps = 28/698 (4%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P+ YTFP  LKAC  L D   G+ IH   +  G + D+FV+ +LL MY +      A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSD 143
           F  MP RD  +WNAM++GY   G    A+  L  M+++   + P   T+ ++LP+ A+  
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 144 NILSGLLIHLYIVKHGLEFN----------LFVSNNLINMYAKFGMMRHALRVFDQMMER 193
            +  G  +H Y ++  L  N          + +   L++MYAK G + +A RVFD M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC------R 247
           + V+W+++I  +   +    A   F  M   G     L  +S TSI + L  C      R
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG-----LCFLSPTSIASALRACASLDHLR 242

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  + + G    D+  GN+++ MYAK G+I+ A A+F+ + VKD +S++ L++GY
Sbjct: 243 MGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+ G   H  VI   L  +
Sbjct: 302 VQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             +   L+DMY KCGRID +  +F  +P    V WN +I+ +GIHG G +A   F +M +
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G  PD +TF+ LL+ACSHSGLV EG+ +FH+M   +G+ P ++HY CMVDL  R G L 
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A+ FIQ+MP+R D  +W ALLGACR++ N++LG   S  + E+  E  G +VL+SNIY+
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
             G+++   EVR + + +G KK+PG S IE+N  +  F  G+++HP+  +IY EL N+  
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            +K LGY PD SFVLQD+EE+EKE  L  HSE+LAIA+GI+S      I + KNLRVCGD
Sbjct: 601 GIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGD 660

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH   K IS +  R IIVRD+NRFHHFK+G CSCGD+W
Sbjct: 661 CHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 14/196 (7%)

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           + + PN  T+   L A S +     G  IH   I   L  D+FV+T L+DMY KC  + D
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF--RQMLDEGVRPDHITFVSLLTAC 444
           A  +F  +P    V WNA+++ +  HG    A+      QM    +RP+  T V+LL   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYG----------CMVDLFGRAGHLGMAHNFIQ 494
           +  G +++G    H       + P+                ++D++ + G L  A     
Sbjct: 124 AQQGALAQGTS-VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 495 NMPVRPDASIWGALLG 510
            MP R + + W AL+G
Sbjct: 183 AMPARNEVT-WSALIG 197


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/718 (38%), Positives = 422/718 (58%), Gaps = 47/718 (6%)

Query: 34  FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L+ CR L +   G ++H  ++  G +   F+ + LL +YC+ G    AR++FD M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R+  SW A++  YC  G+  E + +   M  EGV  D      +   C+   N   G  
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           ++ Y++  G E N  V  ++++M+ K G M  A R F+++  +DV  WN +++ Y    +
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M   G++P+ +T+ S  S    L+  R+ R +HG+ ++      D+++GN
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 271 AVVDMYAK----------LGIINS---------------------------------ACA 287
           ++VD YAK           G+I                                   AC+
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF  L  +DV+ WN++I+  AQ+G +  A+++ + M   N +  N  T VS LPA S + 
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLA 371

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           ALRQG +IH  +I+  L    F+   L+DMYG+CG I  +  +F  +P+   V WN +IS
Sbjct: 372 ALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMIS 431

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+HG G  A+N F+Q    G++P+HITF +LL+ACSHSGL+ EG +YF MM+ E+ + 
Sbjct: 432 VYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMD 491

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++ Y CMVDL  RAG       FI+ MP  P+A++WG+LLGACRIH N +L   A+  
Sbjct: 492 PAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARY 551

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LFE++ ++ G YVLM+NIY+  G+WE   ++R L ++RG+ K PG S IEV  K+  F  
Sbjct: 552 LFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVV 611

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+ +HP  E+I  ++ +L   +K +GYVPD +FVLQDV+EDEKE  L  HSE++A+AFG+
Sbjct: 612 GDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGL 671

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+   +P++I KNLRVCGDCH+ TKFIS++ +R+II+RD+ RFHHF DG+CSCGDYW
Sbjct: 672 ISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 252/519 (48%), Gaps = 57/519 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++ +Y   G   E +  FY   +  G+RPD + FP V KAC  L +   GK ++  +L +
Sbjct: 82  IMEMYCGLGDYEETIKLFY-LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE +  V  S+L M+ + G  ++AR+ F+++  +D   WN M+SGY   G   +AL++ 
Sbjct: 141 GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVF 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYA- 175
            +M LEGV  + IT+AS +  C     +  G  IH Y +K   L+ +L V N+L++ YA 
Sbjct: 201 RKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAK 260

Query: 176 ---------KFGMMRH---------------------------------ALRVFDQMMER 193
                    KFGM++                                  A  VF ++  R
Sbjct: 261 CRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTR 320

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DVV WNSII+A  QS   + A      M  + ++ + +T+VS     ++L   R  + +H
Sbjct: 321 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 380

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            FI+R G    + I+ N+++DMY + G I  +  +F+ +P +D++SWN +I+ Y  +G  
Sbjct: 381 QFIIRCGLDTCNFIL-NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 439

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-- 371
            +A+ +FQ       + PN  T+ ++L A SH G + +G K + +++K     D  V   
Sbjct: 440 MDAVNLFQQFRTMG-LKPNHITFTNLLSACSHSGLIEEGWK-YFKMMKTEYAMDPAVEQY 497

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            C+VD+  + G+ ++ +    ++P   ++  W +++    IH   D A    R + +  +
Sbjct: 498 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFE--L 555

Query: 431 RPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
            P     +V +    S +G   +  +   +M+E    KP
Sbjct: 556 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP 594



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 8/188 (4%)

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +EC EI      Y SIL     +  LR G ++HA+++ N +    F+ + L+++Y + G 
Sbjct: 7   DECIEI------YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++DA  +F ++   +   W AI+  +   G  ++ +  F  M++EGVRPDH  F  +  A
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS       G+  +  M    G + +    G ++D+F + G + +A  F + +  + D  
Sbjct: 121 CSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVF 178

Query: 504 IWGALLGA 511
           +W  ++  
Sbjct: 179 MWNIMVSG 186


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/709 (39%), Positives = 429/709 (60%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+ +Y +   + E +  F Q + + G+ PD  T+  +L A      L +GK+IH   ++ 
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMS-SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+ V  +L+ M  R G  + A++ F  +  RD   +NA+I+   Q G+ VEA +  
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR +GV+++  T  SIL  C+ S  + +G LIH +I + G   ++ + N LI+MYA+ 
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F  M +RD++SWN+IIA Y +  D   A   +  MQ  G++P  +T + L 
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A  +   + + +H  I+R G    +  + NA+++MY + G +  A  VFEG   +DV
Sbjct: 439 SACANSSAYADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN++I G+AQ+G    A ++FQ M+   E+ P+  T+ S+L    +  AL  G +IH 
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQN-EELEPDNITFASVLSGCKNPEALELGKQIHG 556

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+ ++ L  DV +   L++MY +CG + DA ++F+ +     + W A+I      G+  K
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616

Query: 418 ALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           A+  F QM +EG RP D  TF S+L+AC+H+GLV EG + F  M+ E+G+ P ++HYGC+
Sbjct: 617 AIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 676

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           V L GRA     A   I  MP  PDA++W  LLGACRIHGN+ L   A++   ++++ N 
Sbjct: 677 VGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNP 736

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             Y+L+SN+YA  G+W+ V ++R +   RG++K PG S IEV+N +  F   +R+HP+  
Sbjct: 737 AVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETA 796

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY EL+ L+ +M+  GY PD   VL D+ +  +E  L +HSERLAIA+G+I +PP +PI
Sbjct: 797 EIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPI 856

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IFKNLR+CGDCH  +KFIS++  REII RDSNRFH FK+G CSC DYW
Sbjct: 857 RIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/548 (30%), Positives = 280/548 (51%), Gaps = 26/548 (4%)

Query: 8   CGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
           CG   E V   +Q   T     D  T+  +L+ C   R L + K+IH  +++ G   D+F
Sbjct: 7   CGPDREDVSNTHQPRPTE---TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIF 63

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           ++  L++MY +      A ++F +MP RD  SWN++IS Y Q G   +A  + +EM+  G
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
              + IT  SIL  C     + +G  IH  I+K G + +  V N+L++MY K G +  A 
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRAR 183

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +VF  +  RDVVS+N+++  Y Q        G F  M   GI PD +T ++L       +
Sbjct: 184 QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPS 243

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + +H   +  G    D+ +G A+V M  + G ++SA   F+G+  +DV+ +N LI
Sbjct: 244 MLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALI 302

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
              AQ+G   EA E +  M   + +  N+ TY+SIL A S   AL  G  IH+ + ++  
Sbjct: 303 AALAQHGHNVEAFEQYYRMRS-DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             DV +   L+ MY +CG +  A  LFY +P+   + WNAII+ +       +A+  ++Q
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVDLFG 481
           M  EGV+P  +TF+ LL+AC++S   ++G+    M+ E+    GIK +      +++++ 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGK----MIHEDILRSGIKSNGHLANALMNMYR 477

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF------EVDSEN 535
           R G L  A N  +    R D   W +++     HG+ E     + +LF      E++ +N
Sbjct: 478 RCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE----TAYKLFQEMQNEELEPDN 532

Query: 536 VGYYVLMS 543
           + +  ++S
Sbjct: 533 ITFASVLS 540


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 442/709 (62%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS +V  G   EA+  F +     G+  + YTF   L+   +   +  G  IH +VLK 
Sbjct: 219 IISAHVAEGNCLEALSLFRRMQ-EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKS 277

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DV+VA +L+ MY + G    A ++F+ M  RD  SWN ++SG  Q+    +AL+  
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYF 337

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G   D ++V +++    RS N+L G  +H Y +++GL+ N+ + N L++MYAK 
Sbjct: 338 RDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKC 397

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +++    F+ M E+D++SW +IIA Y Q+   + A   F  +Q  G+  D + + S+ 
Sbjct: 398 CCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVL 457

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L      R +HG++ +R   + D+++ NA+V++Y ++G I+ A   FE +  KD+
Sbjct: 458 RACSGLKSRNFIREIHGYVFKRD--LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDI 515

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++IT    NGL  EA+E+F  +++ N I P+    +S L A +++ +L++G +IH 
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTN-IQPDSIAIISALSATANLSSLKKGKEIHG 574

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  +A+ LVDMY  CG ++++  +F+ V +   + W ++I+ +G+HG G+K
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNK 634

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F++M D+ V PDHITF++LL ACSHSGL+ EG+R+F +M+  + ++P  +HY CMV
Sbjct: 635 AIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMV 694

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  L  A++F++NMP++P + IW ALLGAC IH N ELG +A+  L + D+EN G
Sbjct: 695 DLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSG 754

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y L+SNI+A  G+W  V+EVR   +  GLKK PG S IEV+NK+  F   +++HP+ + 
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDD 814

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L   T  + K  GY+    FV  +V E+EK  +L  HSERLA+ +G++ +P  + I
Sbjct: 815 IYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCI 874

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLR+C DCH + K  S++++R ++VRD+NRFHHF+ G+CSCGD+W
Sbjct: 875 RITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 159/523 (30%), Positives = 274/523 (52%), Gaps = 15/523 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  +V  G+  EA++  Y+     G+  D  TFP VLKAC  L +   G +IH   +K 
Sbjct: 116 LMGAFVSSGKYLEAIE-LYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKC 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD--MPVRDSGSWNAMISGYCQSGNAVEALD 115
           G+   VFV  +L+ MY + G    AR LFD   M   D+ SWN++IS +   GN +EAL 
Sbjct: 175 GYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALS 234

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   M+  GV+ +  T  + L        +  G+ IH  ++K     +++V+N LI MYA
Sbjct: 235 LFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYA 294

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G M  A RVF+ M+ RD VSWN++++   Q+     A  +F  MQ +G +PD +++++
Sbjct: 295 KCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLN 354

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L +   +  +    + VH + +R G    ++ IGN +VDMYAK   +      FE +  K
Sbjct: 355 LIAASGRSGNLLKGKEVHAYAIRNG-LDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEK 413

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+ISW T+I GYAQN    EAI +F+ ++ +  +++P      S+L A S + +     +
Sbjct: 414 DLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMM--IGSVLRACSGLKSRNFIRE 471

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  V K  L  D+ +   +V++YG+ G ID A   F  +     V W ++I+C   +G 
Sbjct: 472 IHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGL 530

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHY 473
             +AL  F  +    ++PD I  +S L+A ++   + +G+  +  ++++ F ++  +   
Sbjct: 531 PVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA-- 588

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             +VD++   G +  +     ++  R D  +W +++ A  +HG
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHG 630



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 251/489 (51%), Gaps = 16/489 (3%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A + L  G+++H  +LK       F+A  L+ MY + G    A K+FD+M  R   SWNA
Sbjct: 58  AAKALPQGQQLHALLLK--SHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNA 115

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           ++  +  SG  +EA+++  +MR+ GV++D  T  S+L  C        G  IH   VK G
Sbjct: 116 LMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQ-MMER-DVVSWNSIIAAYEQSNDPITAHGF 217
               +FV N LI MY K G +  A  +FD  MME+ D VSWNSII+A+    + + A   
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  MQ+ G+  +  T V+    V   +  +    +HG +++   F  DV + NA++ MYA
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHF-ADVYVANALIAMYA 294

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G +  A  VFE +  +D +SWNTL++G  QN L S+A+  F+ M+   +  P+Q + +
Sbjct: 295 KCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ-KPDQVSVL 353

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           +++ A    G L +G ++HA  I+N L  ++ +   LVDMY KC  +      F  +   
Sbjct: 354 NLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEK 413

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + W  II+ +  +    +A+N FR++  +G+  D +   S+L AC  SGL S   R F
Sbjct: 414 DLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGLKS---RNF 468

Query: 458 HMMQEEFGIKPHLKH---YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
                 +  K  L        +V+++G  GH+  A    +++  + D   W +++  C +
Sbjct: 469 IREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSK-DIVSWTSMITCC-V 526

Query: 515 HGNMELGAV 523
           H  + + A+
Sbjct: 527 HNGLPVEAL 535


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/715 (40%), Positives = 427/715 (59%), Gaps = 15/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G    A+D  Y+  L   + P+ YTFP VLKAC  L D   G+ IH     +
Sbjct: 70  LIRAYSWRGPFHAAID-LYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAV 128

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DI 116
           G   D+FV+ +L+ +Y R      A  +F  MP+RD  +WNAM++GY   G    A+  +
Sbjct: 129 GLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 188

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN---LFVSNNLINM 173
           LD     G+  +  T+ S+LP+ A+   +  G  +H Y ++  L+ N   + +   L++M
Sbjct: 189 LDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDM 248

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK   + +A RVF  M  R+ V+W+++I  +   +    A   F  M   G+    L+ 
Sbjct: 249 YAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMC--FLSA 306

Query: 234 VSLTS---IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            S+ S   + A L D R    +H  + + G    D+  GN+++ MYAK G+IN A  +F+
Sbjct: 307 TSVASALRVCASLADLRMGTQLHALLAKSG-IHADLTAGNSLLSMYAKAGLINEATMLFD 365

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            + +KD IS+  L++GY QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+
Sbjct: 366 EIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACN-VQPDIATMVSLIPACSHLAALQ 424

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G   H  VI   L  +  +   L+DMY KCGRID +  +F ++P    V WN +I+ +G
Sbjct: 425 HGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYG 484

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           IHG G +A   F  M ++G  PD +TF+ L+ ACSHSGLV+EG+ +F  M  ++GI P +
Sbjct: 485 IHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRM 544

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HY CMVDL  R G L  A+ FIQ+MP++ D  +WGALLGACRIH N++LG   S  + +
Sbjct: 545 EHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQK 604

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E  G +VL+SNI++  G+++   EVR + + +G KK+PG S IE+N  +  F  G++
Sbjct: 605 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQ 664

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +HP    IY EL N+   +K LGY  D SFVLQD+EE+EKE  L  HSE+LAIAFG++S 
Sbjct: 665 SHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSL 724

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
                I + KNLRVCGDCH   K+++ +  R IIVRD+NRFHHFK+G CSCGD+W
Sbjct: 725 NEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 221/443 (49%), Gaps = 5/443 (1%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G   +AR++FD +P  D+ ++NA+I  Y   G    A+D+   M    V  +  T   +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C+   ++ +G  IH +    GL  +LFVS  LI++Y +      A  VF +M  RDVV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           +WN+++A Y        A      MQ + G++P+  TLVSL  ++AQ        SVH +
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 256 IMRR--GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            +R       E V+IG A++DMYAK   +  AC VF G+ V++ ++W+ LI G+      
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           +EA  +F+ M        +  +  S L   + +  LR G ++HA + K+ +  D+     
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNS 346

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY K G I++A  LF ++    ++ + A++S +  +G+ ++A   F++M    V+PD
Sbjct: 347 LLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPD 406

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
             T VSL+ ACSH   +  G R  H      G+         ++D++ + G + ++    
Sbjct: 407 IATMVSLIPACSHLAALQHG-RCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVF 465

Query: 494 QNMPVRPDASIWGALLGACRIHG 516
             MP R D   W  ++    IHG
Sbjct: 466 DKMPAR-DIVSWNTMIAGYGIHG 487


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 442/709 (62%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS +V  G   EA+  F +     G+  + YTF   L+AC     +  G+ IH  +LK 
Sbjct: 222 IISAHVGEGESLEALSLFRRMQ-EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKS 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DV+V+ +L+ MY   G    A ++F  M  +D  SWN ++SG  Q+    +A++  
Sbjct: 281 NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHF 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G   D ++V +++    RS N+L+G+ +H Y +KHG++ N+ + N+LI+MY K 
Sbjct: 341 QDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC 400

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +++    F+ M E+D++SW +IIA Y Q+   + A      +Q   +  D + + S+ 
Sbjct: 401 CCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSIL 460

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L   +  + +HG++++ G  + D++I NA+V++Y +L +++ A  VFE +  KD+
Sbjct: 461 LACSGLKSEKLIKEIHGYVLKGG--LADILIQNAIVNVYGELALVDYARHVFESINSKDI 518

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++IT    NGLA EA+E+F  + E N I P+  T VS+L A + + +L++G +IH 
Sbjct: 519 VSWTSMITCCVHNGLAIEALELFNSLIETN-IEPDLITLVSVLYAAAALSSLKKGKEIHG 577

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  +A  LVDMY +CG +++A ++F  V +   + W ++I+ +G+HG G  
Sbjct: 578 FLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKD 637

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M DE V PDHITF++LL ACSHSGLV EG+++F +M+ E+ ++P  +HY C+V
Sbjct: 638 AIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLV 697

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  L  A++F++NMP+ P A +W ALLGACRIH N +LG VA+ +L ++++EN G
Sbjct: 698 DLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSG 757

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN +A  G+W  V+EVRS+ +   LKK PG S IEV NK+  F   +++HP+   
Sbjct: 758 NYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNN 817

Query: 598 IYDELRNLTAKMKSL-GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L   T  +K   GY      V  DV E+EK  +L  HSERLA+ +G++ +   + +
Sbjct: 818 IYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCL 877

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLR+C DCH + K  S+I++R ++VRD++RFHHF+ G+CSCGD+W
Sbjct: 878 RITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 167/543 (30%), Positives = 283/543 (52%), Gaps = 18/543 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI   V  GR  EA++ + +  +  G+  D +TFP VLKAC    +   G +IH   +K 
Sbjct: 119 MIGACVSAGRYVEAIELYKEMRVL-GVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKC 177

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD--MPVRDSGSWNAMISGYCQSGNAVEALD 115
           G+   VFV  +L+ MY + G    AR LFD   M   D  SWN++IS +   G ++EAL 
Sbjct: 178 GYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALS 237

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   M+  GV  +  T  S L  C     I  G  IH  I+K     +++VSN LI MYA
Sbjct: 238 LFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYA 297

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
             G M  A RVF  M+ +D VSWN++++   Q++    A   F  MQ +G +PD +++++
Sbjct: 298 NCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLN 357

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + +   +  +      VH + ++ G    ++ IGN+++DMY K   +    + FE +P K
Sbjct: 358 MIAASGRSANLLAGMEVHAYAIKHG-IDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEK 416

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+ISW T+I GYAQN    +A+ + + ++ E  +++P      SIL A S + + +   +
Sbjct: 417 DLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMM--IGSILLACSGLKSEKLIKE 474

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  V+K  L  D+ +   +V++YG+   +D A  +F  +     V W ++I+C   +G 
Sbjct: 475 IHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGL 533

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHY 473
             +AL  F  +++  + PD IT VS+L A +    + +G+  +  ++++ F ++  + + 
Sbjct: 534 AIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIAN- 592

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             +VD++ R G +  A N    +  R D  +W +++ A  +HG    G  A D   ++  
Sbjct: 593 -SLVDMYARCGTMENARNIFNYVKQR-DLILWTSMINANGMHG---CGKDAIDLFSKMTD 647

Query: 534 ENV 536
           ENV
Sbjct: 648 ENV 650



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/514 (31%), Positives = 257/514 (50%), Gaps = 15/514 (2%)

Query: 18  FYQFTLTSGLR-PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWD-VFVAASLLHM 72
           F+   L +  R P    +   L+ C   + L  G+++H   LK     D VF+    +HM
Sbjct: 32  FFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHM 91

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    A K+FD M  R   +WNAMI     +G  VEA+++  EMR+ GVS+D  T 
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTF 151

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ-MM 191
             +L  C        G  IH   VK G    +FV N LI MYAK G +  A  +FD  +M
Sbjct: 152 PCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLM 211

Query: 192 ER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           E+ D VSWNSII+A+    + + A   F  MQ+ G++ +  T VS           +  R
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H  I++   F  DV + NA++ MYA  G +  A  VF+ +  KD +SWNTL++G  QN
Sbjct: 272 GIHAVILKSNHFT-DVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
            + S+AI  FQ M++  +  P+Q + ++++ A      L  G+++HA  IK+ +  ++ +
Sbjct: 331 DMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHI 389

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMYGKC  +    S F  +P    + W  II+ +  +     ALN  R++  E +
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKM 449

Query: 431 RPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             D +   S+L AC  SGL SE   +  H    + G+   L     +V+++G    +  A
Sbjct: 450 DVDPMMIGSILLAC--SGLKSEKLIKEIHGYVLKGGLADILIQ-NAIVNVYGELALVDYA 506

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
            +  +++  + D   W +++  C +H  + + A+
Sbjct: 507 RHVFESINSK-DIVSWTSMITCC-VHNGLAIEAL 538


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/727 (38%), Positives = 428/727 (58%), Gaps = 50/727 (6%)

Query: 9   GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVA 66
            ++ + ++CF  F   +  G RPD YT P V++ACR+L +                  + 
Sbjct: 155 AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN------------------LQ 196

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            +L+ MY +      AR LFD M  RD  +W  MI GY + G A E+L + ++MR EGV 
Sbjct: 197 MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 256

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D + + +++  CA+   +    +I  YI +   + ++ +   +I+MYAK G +  A  +
Sbjct: 257 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 316

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD+M E++V+SW+++IAAY        A   F  M  +G+ PD +TL SL        + 
Sbjct: 317 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNL 376

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              R VH      G  ++++I+ N +V  Y+    ++ A  +F+G+ V+D +SW+ ++ G
Sbjct: 377 TQVRQVHAQASVHG-MLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 435

Query: 307 YAQ----------------------------NGLASEAIEVFQMMEECNEINPNQGTYVS 338
           +A+                             G A+E++ +F  M E   + P++   V+
Sbjct: 436 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMRE-EGVVPDKVAMVT 494

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           ++ A + +GA+ +   I   + +     DV + T ++DM+ KCG ++ A  +F ++   +
Sbjct: 495 VVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 554

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            + W+A+I+ +G HGQG KAL+ F  ML  G+ P+ IT VSLL ACSH+GLV EG R+F 
Sbjct: 555 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 614

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           +M E++ ++  +KHY C+VDL GRAG L  A   I++M V  D  +WGA LGACR H ++
Sbjct: 615 LMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDV 674

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            L   A+  L E+  +N G+Y+L+SNIYAN G+WE V + R L   R LKK PGW+ IEV
Sbjct: 675 VLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 734

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
           +NK   F  G+ THP+ ++IY+ L++L  K++ +GYVPD +FVL DV+E+ K  IL SHS
Sbjct: 735 DNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHS 794

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIAFG+I++P  +PI+I KNLRVCGDCH + K +S IT R IIVRD+NRFHHFK+G 
Sbjct: 795 EKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGA 854

Query: 699 CSCGDYW 705
           CSCGDYW
Sbjct: 855 CSCGDYW 861



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 241/527 (45%), Gaps = 57/527 (10%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           +F     L P FY     L  CRNL   +++H      G   ++ VA  L++ Y  +   
Sbjct: 72  KFHFLQRLNPKFYI--SALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRAL 129

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + A  LFD M VRDS SW+ M+ G+ + G+ +       E+   G   D  T+  ++  C
Sbjct: 130 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC 189

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
               N+                        L++MY K   +  A  +FD+M ERD+V+W 
Sbjct: 190 RDLKNL---------------------QMALVDMYVKCREIEDARFLFDKMQERDLVTWT 228

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            +I  Y +      +   F  M++ G+ PD + +V++    A+L     +R +  +I R+
Sbjct: 229 VMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRK 288

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
             F  DVI+G A++DMYAK G + SA  +F+ +  K+VISW+ +I  Y  +G   +A+++
Sbjct: 289 K-FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 347

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+MM     + P++ T  S+L A  +   L Q  ++HA+   + +  ++ VA  LV  Y 
Sbjct: 348 FRMMLSSGML-PDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYS 406

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAII----------SCHGIH----------------- 412
               +DDA  LF  +    SV W+ ++          +C G                   
Sbjct: 407 YYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPF 466

Query: 413 -GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ-EEFGIKPHL 470
            G  +++L  F +M +EGV PD +  V+++ AC+  G + + +     +Q ++F +   L
Sbjct: 467 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 526

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
                M+D+  + G +  A      M  +   S W A++ A   HG 
Sbjct: 527 G--TAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQ 570


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/706 (41%), Positives = 428/706 (60%), Gaps = 9/706 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA++ +++  L  G+RPD YTFP VL+ C  L D   G+++H  V++ 
Sbjct: 166 LVGGYAKAGYFDEALNLYHRM-LWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV V  +L+ MY + G    AR +FD MP RD  SWNAMISGY ++   +E L + 
Sbjct: 225 GFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   V  D +T+ S++  C    +   G  +H Y++K G    + V+N+LI M++  
Sbjct: 285 FMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSV 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A  VF +M  +D+VSW ++I+ YE++  P  A   +T M+  G+ PD +T+ S+ 
Sbjct: 345 GCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L        +H F  R G     VI+ N+++DMY+K   I+ A  VF  +P K+V
Sbjct: 405 SACAGLGLLDKGIMLHEFADRTG-LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNV 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISW ++I G   N  + EA+  FQ M     + PN  T VS+L A + +GAL  G +IHA
Sbjct: 464 ISWTSIILGLRLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSCGKEIHA 521

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  L FD F+   L+DMY +CGR++ A + F    +  +  WN +++ +   G+G  
Sbjct: 522 HALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVA-SWNILLTGYAQQGKGGL 580

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M++  V PD ITF SLL ACS SG+V++G  YF  M+ +F I P+LKHY  +V
Sbjct: 581 AVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVV 640

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A+ FI+ MP+ PD +IWGALL ACRI+ N+ELG +A+  +FE+D+++VG
Sbjct: 641 DLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVG 700

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+ N+YA+ GKW+ V  VR + R+  L   PG S +EV  +V  F TG+  HP+ ++
Sbjct: 701 YYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKE 760

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L     KM++ G    K     D++  + E I   HSERLAIAFG+I++ P +PI 
Sbjct: 761 INAVLEGFYEKMEATGLSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIW 819

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           + KNL +C +CHN  KFIS++  R I VRD+ +FHHFKDG+CSCGD
Sbjct: 820 VTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 272/504 (53%), Gaps = 11/504 (2%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T+  +L+ C   R   +G ++H  V K      V +  +LL M+ RFG    A  +F  M
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             RD  SWN ++ GY ++G   EAL++   M   G+  D  T   +L  C    ++  G 
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +HL+++++G E ++ V N LI MY K G +  A  VFD+M  RD +SWN++I+ Y +++
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
             +     F  M++  + PDL+T+ S+ S    L D R  R VHG++++ G F+ +V + 
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG-FVAEVSVN 334

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N+++ M++ +G  + A  VF  +  KD++SW  +I+GY +NGL  +A+E + +ME    +
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH-EGV 393

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  S+L A + +G L +GI +H    +  L   V VA  L+DMY KC  ID A+ 
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F+++P  + + W +II    ++ +  +AL FF+QM+   ++P+ +T VS+L+AC+  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGA 512

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +S G+  + H ++   G    L +   ++D++ R G +  A N  Q      D + W  L
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWN--QFNSCEKDVASWNIL 568

Query: 509 LGACRIHGNMELGAVASDRLFEVD 532
           L      G   L      ++ E D
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESD 592



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 16/504 (3%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N++I   C  G+  +AL  LD M+   VS++  T  ++L +C        G  +H Y+ K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
                 + + N L++M+ +FG +  A  VF +M ERD+ SWN ++  Y ++     A   
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M   GI+PD+ T   +      L D    R VH  ++R G F  DV + NA++ MY 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYV 241

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I SA  VF+ +P +D ISWN +I+GY +N +  E + +F MM E   ++P+  T  
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF-VDPDLMTMT 300

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S++ A   +G  R G ++H  VIK     +V V   L+ M+   G  D+A  +F ++   
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             V W A+IS +  +G  +KA+  +  M  EGV PD IT  S+L+AC+  GL+ +G    
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG---- 416

Query: 458 HMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            +M  EF  +  L  Y      ++D++ +   +  A      +P +   S    +LG   
Sbjct: 417 -IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
            + + E        +  +   +V    ++S   A +G      E+ + A   GL    G+
Sbjct: 476 NYRSFEALFFFQQMILSLKPNSVTLVSVLSAC-ARIGALSCGKEIHAHALRTGL----GF 530

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEK 597
                N  +D++    R  P + +
Sbjct: 531 DGFLPNALLDMYVRCGRMEPAWNQ 554


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/682 (40%), Positives = 403/682 (59%), Gaps = 5/682 (0%)

Query: 27  LRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L+PD  T   +L AC +   L  G+++H  V+K G   D+ V  +LL +Y        A 
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           ++F      +   WN M+  + +  N  E+  I  +M+++G+  +  T  SIL  C    
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G  IH  ++K G +FN++V + LI+MYAK G +  A  +   + E DVVSW ++I+
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALIS 489

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y Q N    A   F  M   GIQ D +   S  S  A +      R +H      G + 
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSG-YS 548

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
           ED+ IGNA+V +YA+ G I  A   FE +  KD ISWN LI+G+AQ+G   +A++VF  M
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM 608

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
               ++  +  T+ S + A +++  ++QG +IHA +IK     D+ V+  L+  Y KCG 
Sbjct: 609 NRA-KLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGS 667

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I+DA   F ++P  + V WNA+I+ +  HG G++A+N F +M   G  P+H+TFV +L+A
Sbjct: 668 IEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSA 727

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH GLV++G  YF  M +E G+ P   HY C+VDL  RAG L  A  FI+ MP+ PDA+
Sbjct: 728 CSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDAT 787

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IW  LL AC +H N+E+G  A+  L E++ E+   YVL+SN+YA  GKW+  D+ R + R
Sbjct: 788 IWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMR 847

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           +RG+KK PG S IEV N V  FY G+R HP  +KIY+ L  L  K   +GY  D+  +L 
Sbjct: 848 NRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLN 907

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DVE+++K+  +  HSE+LAI FG++S     PI + KNLRVC DCH+W KF+S+I+ R I
Sbjct: 908 DVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAI 967

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           IVRD+ RFHHF+ GICSC DYW
Sbjct: 968 IVRDAYRFHHFEGGICSCKDYW 989



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/584 (27%), Positives = 283/584 (48%), Gaps = 16/584 (2%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG----KKIHCSVLKLGFEWDVFV 65
           ++S  V   +   +   + P   +F  VL+AC     G    ++IH  ++  G      +
Sbjct: 90  KMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPII 149

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           +  L+ +Y + GL   ARK+FD++  +DS SW AMISG+ Q+G   EA+ +  EM   G+
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
              P   +S+L  C +      G  +H  + K+G     +V N L+ +Y++      A +
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK 269

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF +M  +D VS+NS+I+   Q      A   FT M++  ++PD +T+ SL S  A    
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
                 +H ++++ G    D+I+  A++D+Y     I +A  +F     ++V+ WN ++ 
Sbjct: 330 LCKGEQLHSYVIKAG-ISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            + +    SE+  +F+ M +   + PNQ TY SIL   + VGAL  G +IH +VIK    
Sbjct: 389 AFGKLDNLSESFRIFRQM-QIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           F+V+V + L+DMY K G++D A  +   +     V W A+IS +  H    +AL  F++M
Sbjct: 448 FNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
           L+ G++ D+I F S ++AC+    +++G R  H      G    L     +V L+ R G 
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQG-RQIHAQSYVSGYSEDLSIGNALVSLYARCGR 566

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           +  A+   + +  + D+  W  L+      G  E       ++     E   ++   S +
Sbjct: 567 IKEAYLEFEKIDAK-DSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE-ASFFTFGSAV 624

Query: 546 --YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
              AN+   +   ++ ++   RG       S IEV+N +  FY 
Sbjct: 625 SAAANIANIKQGKQIHAMIIKRGFD-----SDIEVSNALITFYA 663



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 157/527 (29%), Positives = 262/527 (49%), Gaps = 16/527 (3%)

Query: 26  GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+  +  T+  +L  C N   LV+ KK+H  +LKLGF  +  +   L+ +Y   G  +  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA-R 141
            K+F+DMP R   SW+ +ISG+ +   +   LD+   M  E VS   I+ AS+L  C+  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              I     IH  I+ HGL  +  +SN LI +YAK G++  A +VFD +  +D VSW ++
Sbjct: 125 RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAM 184

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ + Q+     A   F  M  AGI P      S+ S   ++        +H  + + G 
Sbjct: 185 ISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS 244

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            +E  +  NA+V +Y+++    SA  VF  +  KD +S+N+LI+G AQ G +  A+E+F 
Sbjct: 245 SLETYVC-NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+  + + P+  T  S+L A +  GAL +G ++H+ VIK  +  D+ V   L+D+Y  C
Sbjct: 304 KMKR-DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNC 362

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
             I  A  +F      + V WN ++   G      ++   FRQM  +G+ P+  T+ S+L
Sbjct: 363 SDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSIL 422

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             C+  G +  G++  H    + G + ++     ++D++ + G L  AH  ++ +    D
Sbjct: 423 RTCTSVGALDLGEQ-IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL-TEDD 480

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFE-----VDSENVGYYVLMS 543
              W AL+     H    L A A     E     + S+N+G+   +S
Sbjct: 481 VVSWTALISGYAQHN---LFAEALKHFKEMLNRGIQSDNIGFSSAIS 524



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 184/393 (46%), Gaps = 5/393 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+  +  T   +L +C  S +++    +H  I+K G      + N L+++Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTS 238
           +   ++VF+ M  R V SW+ II+ + +          F+ M +  + P  ++  S L +
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                   R +  +H  I+  G  +   II N ++ +YAK G+I SA  VF+ L  KD +
Sbjct: 121 CSGHRIGIRYAEQIHARIICHG-LLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW  +I+G++QNG   EAI +F  M     I P    + S+L   + +     G ++HA 
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAG-IFPTPYVFSSVLSGCTKIKLFDVGEQLHAL 238

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V K     + +V   LV +Y +      A  +F ++     V +N++IS     G  D A
Sbjct: 239 VFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGA 298

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L  F +M  + ++PD +T  SLL+AC+ +G + +G++  H    + GI   +   G ++D
Sbjct: 299 LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSDMIVEGALLD 357

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           L+     +  AH          +  +W  +L A
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/718 (40%), Positives = 430/718 (59%), Gaps = 28/718 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y +   L +A+ CF+   +   +R     +  +L+ C   +D   G++IH  ++  
Sbjct: 116 MLKGYAKNSSLGDAL-CFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITN 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE ++FV  +++ +Y +    + A K+F+ M  +D  SW  +++GY Q+G+A  AL ++
Sbjct: 175 GFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLV 234

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G   D +T+ SILP  A    +  G  IH Y  + G E  + V+N L++MY K 
Sbjct: 235 LQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKC 294

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  R A  VF  M  + VVSWN++I    Q+ +   A   F  M   G  P  +T++ + 
Sbjct: 295 GSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVL 354

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFM----------EDVIIGNAVVDMYAKLGIINSACA 287
              A L D           + RGWF+           +V + N+++ MY+K   ++ A +
Sbjct: 355 LACANLGD-----------LERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAAS 403

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  L  K  ++WN +I GYAQNG   EA+ +F MM+    I  +  T V ++ A +   
Sbjct: 404 IFNNLE-KTNVTWNAMILGYAQNGCVKEALNLFCMMQS-QGIKLDCFTLVGVITALADFS 461

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
             RQ   IH   ++ C+  +VFV+T LVDMY KCG I  A  LF  +     + WNA+I 
Sbjct: 462 VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMID 521

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G HG G + L+ F +M    V+P+ ITF+S+++ACSHSG V EG   F  MQE++ ++
Sbjct: 522 GYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLE 581

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY  MVDL GRAG L  A NFIQ MP++P  S+ GA+LGAC+IH N+ELG  A+ +
Sbjct: 582 PTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQK 641

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF++D +  GY+VL++NIYA+   W+ V +VR+   D+GL KTPG S +E+ N++  FY+
Sbjct: 642 LFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYS 701

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+  HP+ +KIY  L  L  ++K+ GYVPD   +  DVEED K+ +L+SHSERLAIAFG+
Sbjct: 702 GSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGL 760

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +++ P + + I KNLRVCGDCH+ TK+IS +T REIIVRD  RFHHFK+G CSCGDYW
Sbjct: 761 LNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 255/480 (53%), Gaps = 5/480 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+ C +  +  +I   ++K GF  +      ++ ++C+FG  + A ++F+ + ++    
Sbjct: 53  LLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVL 112

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           ++ M+ GY ++ +  +AL     M  + V +     A +L +C  + ++  G  IH  I+
Sbjct: 113 YHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLII 172

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            +G E NLFV   ++++YAK   + +A ++F++M  +D+VSW +++A Y Q+     A  
Sbjct: 173 TNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQ 232

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
               MQ+AG +PD +TLVS+   VA +   R  RS+HG+  R G F   V + NA++DMY
Sbjct: 233 LVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG-FESLVNVTNALLDMY 291

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G    A  VF+G+  K V+SWNT+I G AQNG + EA   F  M +  E+ P + T 
Sbjct: 292 FKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV-PTRVTM 350

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           + +L A +++G L +G  +H  + K  L  +V V   L+ MY KC R+D A S+F  + +
Sbjct: 351 MGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEK 410

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            ++V WNA+I  +  +G   +ALN F  M  +G++ D  T V ++TA +    V+   ++
Sbjct: 411 -TNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQAKW 468

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H +     +  ++     +VD++ + G +  A      M  R     W A++     HG
Sbjct: 469 IHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQER-HVITWNAMIDGYGTHG 527


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/710 (40%), Positives = 428/710 (60%), Gaps = 18/710 (2%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEW 61
           Y + G   EA D F    L  G +   +T   VL+ C +L     G+ IH  V+K GFE 
Sbjct: 137 YCKFGCKVEAFDLFRSMRL-EGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEG 195

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDE 119
           +VFV   L+ MY +    + A  LF  +    ++   W AM++GY Q+G+  +A++    
Sbjct: 196 NVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRY 255

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M  +GV  +  T  +IL  C+       G  +H +IVK G   N++V + L++MYAK G 
Sbjct: 256 MHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGD 315

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +++A  + + M + DVVSWNS++  + +      A   F  M    ++ D  T  S+   
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSV--- 372

Query: 240 VAQLNDCR----NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
              LN C     N +SVHG I++ G F    ++ NA+VDMYAK G ++ A  VFE +  K
Sbjct: 373 ---LNCCVVGSINPKSVHGLIIKTG-FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEK 428

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DVISW +L+TGYAQN    E++++F  M     +NP+Q    SIL A + +  L  G ++
Sbjct: 429 DVISWTSLVTGYAQNNSHEESLKIFCDMR-VTGVNPDQFIVASILSACAELTLLEFGKQV 487

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   IK+ L +   V   LV MY KCG +DDA ++F  +     + W AII  +  +G+G
Sbjct: 488 HLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKG 547

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             +L F+  M+  G RPD ITF+ LL ACSH+GLV EG++YF  M + +GIKP  +HY C
Sbjct: 548 RNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYAC 607

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DLFGR+G L  A   +  M V+PDA++W +LL ACR+H N+EL   A+  LFE++  N
Sbjct: 608 MIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMN 667

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV++SN+Y+   KW  V ++R L + +G+ K PG S +E+N++V+ F + +R HP+ 
Sbjct: 668 AMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPRE 727

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            +IY ++  +  ++K  GYVPD SF L D++++ KE  L  HSE+LA+AFG++++PP +P
Sbjct: 728 AEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAP 787

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+IFKNLRVCGDCH+  K+IS++  R II+RDSN FHHF++G CSCGDYW
Sbjct: 788 IRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/481 (30%), Positives = 242/481 (50%), Gaps = 41/481 (8%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI--------------------- 101
           ++    LL+   + G  N ARKLFD MP +D  SWN MI                     
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 102 ----------SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
                     SGYC+ G  VEA D+   MRLEG      T+ S+L VC+    I +G +I
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD--QMMERDVVSWNSIIAAYEQSN 209
           H ++VK+G E N+FV   L++MYAK   +  A  +F   +   ++ V W +++  Y Q+ 
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           D   A  FF  M   G++ +  T  + LT+  + L  C   + VHGFI++ G F  +V +
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQ-VHGFIVKSG-FGSNVYV 302

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            +A+VDMYAK G + +A  + E +   DV+SWN+L+ G+ ++GL  EA+ +F+ M   N 
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN- 361

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +  +  T+ S+L     VG++     +H  +IK        V+  LVDMY K G +D A 
Sbjct: 362 MKIDDYTFPSVLNC-CVVGSINPK-SVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           ++F ++     + W ++++ +  +   +++L  F  M   GV PD     S+L+AC+   
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           L+  G++  H+   + G++     Y  +V ++ + G L  A     +M V+ D   W A+
Sbjct: 480 LLEFGKQ-VHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAI 537

Query: 509 L 509
           +
Sbjct: 538 I 538



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 184/380 (48%), Gaps = 39/380 (10%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND------------ 210
           +++ +N L+N  +K G +  A ++FD+M ++D  SWN++I++Y                 
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 211 -------------------PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
                               + A   F +M+  G +    TL S+  + + L   +    
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQ 309
           +HGF+++ G F  +V +   +VDMYAK   ++ A  +F+GL    K+ + W  ++TGYAQ
Sbjct: 184 IHGFVVKNG-FEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NG   +A+E F+ M     +  NQ T+ +IL A S V A   G ++H  ++K+    +V+
Sbjct: 243 NGDGYKAVEFFRYM-HAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVY 301

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V + LVDMY KCG + +A ++   +     V WN+++     HG  ++AL  F+ M    
Sbjct: 302 VQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN 361

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++ D  TF S+L  C    + S   +  H +  + G + +      +VD++ + G +  A
Sbjct: 362 MKIDDYTFPSVLNCCV---VGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCA 418

Query: 490 HNFIQNMPVRPDASIWGALL 509
           +   + M +  D   W +L+
Sbjct: 419 YTVFEKM-LEKDVISWTSLV 437



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 38/287 (13%)

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT------------------ 305
           E +   N +++  +K G +N A  +F+ +P KD  SWNT+I+                  
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 306 -------------GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
                        GY + G   EA ++F+ M        +Q T  S+L   S +G ++ G
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSM-RLEGWKASQFTLGSVLRVCSSLGLIQTG 181

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF--YQVPRSSSVPWNAIISCHG 410
             IH  V+KN    +VFV T LVDMY KC  + +A  LF   +  R + V W A+++ + 
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPH 469
            +G G KA+ FFR M  +GV  +  TF ++LTACS       G++ +  +++  FG   +
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVY 301

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           ++    +VD++ + G L  A N ++ M    D   W +L+     HG
Sbjct: 302 VQ--SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/704 (42%), Positives = 420/704 (59%), Gaps = 38/704 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRD 93
           +L  C++  + K+IH  ++K G     F  + L+  +C    FG  + A  LF+ +   +
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPN 96

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN MI G   S + V A+D    M L GV  +  T   +L  CA+      G  IH 
Sbjct: 97  QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHA------------------------------ 183
           +++K GLE + FV  +LINMYA+ G + +A                              
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD 216

Query: 184 -LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
             R+F+++  RD VSWN++IA Y QS     A  FF  M++A + P+  T+V++ S  AQ
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                    V  +I   G    ++ + NA++DMY+K G ++ A  +FEG+  KD+ISWN 
Sbjct: 277 SGSLELGNWVRSWIEDHG-LGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I GY+      EA+ +F+ M++ N + PN  T+VSILPA +++GAL  G  IHA + K 
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK 394

Query: 363 CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
            L   +  + T L+DMY KCG I+ A  +F  +   S   WNA+IS   +HG  + AL  
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           FRQM DEG  PD ITFV +L+ACSH+GLV  G++ F  M E++ I P L+HYGCM+DL G
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG    A   ++NM ++PD +IWG+LLGACR+HGN+ELG  A+  LFE++ EN G YVL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA  G+W+ V  +R+   D+G+KK PG SSIEV++ V  F  G++ H + + IY  
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKM 634

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  +   ++  G+VPD S VL D++E+ KE  L+ HSE+LAIAFG+IS+ P++ I+I KN
Sbjct: 635 LDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKN 694

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCG+CH+  K IS+I  REII RD NRFHHFKDG CSC DYW
Sbjct: 695 LRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 236/439 (53%), Gaps = 44/439 (10%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLL 70
           A+D FY   L  G+ P+ YTFP +LK+C  +    +GK+IH  VLKLG E D FV  SL+
Sbjct: 116 AID-FYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLI 174

Query: 71  HMYCR---FGLANV----------------------------ARKLFDDMPVRDSGSWNA 99
           +MY +    G A +                            AR+LF+++PVRD+ SWNA
Sbjct: 175 NMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNA 234

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           MI+GY QSG   EAL    EM+   V+ +  T+ ++L  CA+S ++  G  +  +I  HG
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG 294

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           L  NL + N LI+MY+K G +  A  +F+ + E+D++SWN +I  Y   N    A   F 
Sbjct: 295 LGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFR 354

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            MQQ+ ++P+ +T VS+    A L      + +H +I ++   + +  +  +++DMYAK 
Sbjct: 355 KMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKC 414

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I +A  VF G+  K + SWN +I+G A +G A+ A+E+F+ M +     P+  T+V +
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRD-EGFEPDDITFVGV 473

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP 395
           L A SH G +  G +  + ++++   +D+        C++D+ G+ G  D+A +L   + 
Sbjct: 474 LSACSHAGLVELGRQCFSSMVED---YDISPKLQHYGCMIDLLGRAGLFDEAEALMKNME 530

Query: 396 -RSSSVPWNAIISCHGIHG 413
            +     W +++    +HG
Sbjct: 531 MKPDGAIWGSLLGACRVHG 549


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/639 (43%), Positives = 417/639 (65%), Gaps = 17/639 (2%)

Query: 79   ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV----SMDPITVAS 134
            +N+A   +  +   +  SWN++I+   + G++VEAL     +R  G+    S  P T+ S
Sbjct: 1092 SNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKS 1151

Query: 135  ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
               +C    +++SG + H      G E +LFVS+ LI+MY+K G ++ A  +FD++  R+
Sbjct: 1152 CSALC----DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 1207

Query: 195  VVSWNSIIAAYEQSNDPITAHGFF-------TTMQQAGIQP-DLLTLVSLTSIVAQLNDC 246
            VVSW S+I  Y Q+     A   F       T ++     P D + +VS+ S  ++++  
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 247  RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              +  VHGF++++G F   + +GN ++D YAK G    +  VF+ +  KD ISWN++I  
Sbjct: 1268 GITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAV 1326

Query: 307  YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            YAQ+GL+ EA+EVF  M     +  N  T  ++L A +H GALR G  IH +VIK  L +
Sbjct: 1327 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY 1386

Query: 367  DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            +V V T ++DMY KCGR++ A   F ++   +   W A+++ +G+HG+  +AL+ F +M+
Sbjct: 1387 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 1446

Query: 427  DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
              GV+P++ITFVS+L ACSH+GLV EG  +F+ M+ ++ I+P ++HYGCMVDLFGRAG L
Sbjct: 1447 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCL 1506

Query: 487  GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
              A+N I+ M ++PD  +WG+LLGACRIH N++LG +A+ +LFE+D +N GYYVL+SN+Y
Sbjct: 1507 NEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLY 1566

Query: 547  ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
            A+ G+W  V+ +R L ++R L K PG+S +E+  +V +F  G++ HP +E IY  L  LT
Sbjct: 1567 ADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLT 1626

Query: 607  AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
             +++ +GYVP+ + VL DV+E+EKE IL  HSE+LA+AFG+++S P + I I KNLRVCG
Sbjct: 1627 LELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCG 1686

Query: 667  DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            DCH   K IS++  R+ +VRDS RFHHFKDG+CSCGDYW
Sbjct: 1687 DCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 186/370 (50%), Gaps = 33/370 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  I++ GL  +  ++  LI++Y+  G + +A+ +F Q+      +WN II A   +  
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   +  M   GI  D  T   +             + VHG +++ G F  DV + N
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFVQN 164

Query: 271 AVVDMYAKLGIINSACAVFEGL-------------------------------PVKDVIS 299
            ++D Y K G    A  VFE +                               P K+V+S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  +I GY +N    EA+E+F+ M+  N I PN+ T VS++ A + +G L  G  IH   
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IKNC+   V++ T L+DMY KCG I DA+ +F  +PR S   WN++I+  G+HG G +AL
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           N F +M    V+PD ITF+ +L AC H   V EG  YF  M + +GI P  +HY CM +L
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 480 FGRAGHLGMA 489
           + R+ +L  A
Sbjct: 404 YARSNNLDEA 413



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 252/485 (51%), Gaps = 24/485 (4%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
            +I+   R G   EA+  F       GL P   +FP  +K+C    +LV G+  H      
Sbjct: 1113 VIADLARGGDSVEALRAFSSLR-KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVF 1171

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL--- 114
            GFE D+FV+++L+ MY + G    AR LFD++P+R+  SW +MI+GY Q+  A  AL   
Sbjct: 1172 GFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF 1231

Query: 115  -DIL-DEMRLE---GVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVS 167
             D L +E  +E    V +D + + S+L  C+R     I  G  +H ++VK G + ++ V 
Sbjct: 1232 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVG 1289

Query: 168  NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGI 226
            N L++ YAK G    + +VFD M E+D +SWNS+IA Y QS     A   F  M +  G+
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 227  QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            + + +TL ++    A     R  + +H  +++      +V +G +++DMY K G +  A 
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAK 1408

Query: 287  AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
              F+ +  K+V SW  ++ GY  +G A EA+++F  M     + PN  T+VS+L A SH 
Sbjct: 1409 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHA 1467

Query: 347  GALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
            G + +G    +A   K  +   +    C+VD++G+ G +++A +L  ++  +   V W +
Sbjct: 1468 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527

Query: 405  IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEE 463
            ++    IH   D      +++ +  + PD+  +  LL+   + +G  ++ +R   +M+  
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFE--LDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNR 1585

Query: 464  FGIKP 468
              +KP
Sbjct: 1586 QLVKP 1590



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 190/397 (47%), Gaps = 34/397 (8%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+ C+N    ++IH  +++ G   D  +   L+H+Y   G    A  LF  +    + +
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I     +G + +AL +   M  +G++ D  T   ++  C    +I  G ++H  ++
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA------------- 203
           K+G   ++FV NNLI+ Y K G  R AL+VF++M  R+VVSW ++I+             
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 204 ------------------AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                              Y ++  P  A   F  MQ   I P+  T+VSL     ++  
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R +H + ++    +  V +G A++DMY+K G I  A  VFE +P K + +WN++IT
Sbjct: 273 LTLGRGIHDYAIKNCIEI-GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT 331

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
               +GL  EA+ +F  ME  N + P+  T++ +L A  H+  +++G     R+ ++   
Sbjct: 332 SLGVHGLGQEALNLFSEMERVN-VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 366 FDVFV-ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
             +     C+ ++Y +   +D+A     +V   ++ P
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSP 427



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 34/260 (13%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
           LSE     Y+  +  G+  D +TFP V+KAC N +    GK +H S++K GF  DVFV  
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 68  SLLHMY-----CRFGLA--------NV------------------ARKLFDDMPVRDSGS 96
           +L+  Y      RF L         NV                  AR++FD++P ++  S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W AMI+GY ++    EAL++   M+ E +  +  T+ S++  C     +  G  IH Y +
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K+ +E  +++   LI+MY+K G ++ A+ VF+ M  + + +WNS+I +         A  
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 217 FFTTMQQAGIQPDLLTLVSL 236
            F+ M++  ++PD +T + +
Sbjct: 345 LFSEMERVNVKPDAITFIGV 364



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           LRQ   IHA++I++ L  D  +   L+ +Y   GRI  A+ LFYQ+    +  WN II  
Sbjct: 43  LRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           + I+G  ++AL  ++ M+ +G+  D  TF  ++ AC++   +  G +  H    ++G   
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSG 158

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            +     ++D + + GH   A    + M VR   S W  ++      G+++     + R+
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTVISGLISCGDLQ----EARRI 213

Query: 529 F-EVDSENVGYYVLMSNIY 546
           F E+ S+NV  +  M N Y
Sbjct: 214 FDEIPSKNVVSWTAMINGY 232



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y+R  +  EA++ F +      + P+ YT   ++KAC     L  G+ IH   +K 
Sbjct: 228 MINGYIRNQQPEEALELFKRMQ-AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E  V++  +L+ MY + G    A ++F+ MP +   +WN+MI+     G   EAL++ 
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            EM    V  D IT   +L  C    N+  G      + +H
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/734 (38%), Positives = 432/734 (58%), Gaps = 33/734 (4%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL------VDGKKIHCSVL 55
           I+   R  +  +A++ F    + + +    +T   V  AC NL        GK++H   L
Sbjct: 166 IAALCRFEKWEQALEAFRAMQMEN-MELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSL 224

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           ++G +   F   +L+ MY + G  + ++ LF+    RD  SWN MIS + QS    EAL 
Sbjct: 225 RVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALA 283

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMY 174
               M LEGV +D +T+AS+LP C+  + +  G  IH Y++++  L  N FV + L++MY
Sbjct: 284 FFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMY 343

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTL 233
                +    RVFD ++ R +  WN++I+ Y ++  D      F   ++ AG+ P+  T+
Sbjct: 344 CNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTM 403

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+           N  S+HG+ ++ G F ED  + NA++DMY+++G ++ +  +F+ + 
Sbjct: 404 ASVMPACVHCEAFSNKESIHGYAVKLG-FKEDRYVQNALMDMYSRMGKMDISETIFDSME 462

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI----------------NPNQGTYV 337
           V+D +SWNT+ITGY  +G  S A+ +   M+                      PN  T +
Sbjct: 463 VRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLM 522

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++LP  + + A+ +G +IHA  I+N L  D+ V + LVDMY KCG ++ +  +F ++P  
Sbjct: 523 TVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK 582

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-----PDHITFVSLLTACSHSGLVSE 452
           + + WN +I   G+HG+G++AL  F+ M+ E  R     P+ +TF+++  ACSHSGL+SE
Sbjct: 583 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 642

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGA 511
           G   F+ M+ + G++P   HY C+VDL GRAG L  A+  +  MP   D    W +LLGA
Sbjct: 643 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 702

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CRIH N+ELG VA+  L  ++     +YVL+SNIY++ G W    EVR   R  G+KK P
Sbjct: 703 CRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 762

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S IE  ++V  F  G+ +HP+ E+++  L  L+ KM+  GYVPD S VL +V+EDEKE
Sbjct: 763 GCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKE 822

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
           ++L  HSE+LAIAFGI+++PP + I++ KNLRVC DCH  TKFIS+I EREIIVRD  RF
Sbjct: 823 NLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRF 882

Query: 692 HHFKDGICSCGDYW 705
           HHFK+G CSCGDYW
Sbjct: 883 HHFKEGTCSCGDYW 896



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/539 (27%), Positives = 269/539 (49%), Gaps = 30/539 (5%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF-EW 61
            R     EA+  + + T+ SG RPD + FP VLKA   L D   G++IH + +K G+   
Sbjct: 68  TRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSS 126

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V VA +L++MY + G      K+FD +  RD  SWN+ I+  C+     +AL+    M+
Sbjct: 127 SVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQ 186

Query: 122 LEGVSMDPITVASILPVCARSDNILSGL----LIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +E + +   T+ S+   C+ +  ++ GL     +H Y ++ G +   F +N L+ MYAK 
Sbjct: 187 MENMELSSFTLVSVALACS-NLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKL 244

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  +F+  ++RD+VSWN++I+++ QS+    A  FF  M   G++ D +T+ S+ 
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 304

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L      + +H +++R    +E+  +G+A+VDMY     + S   VF+ +  + +
Sbjct: 305 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 364

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
             WN +I+GYA+NGL  +A+ +F  M +   + PN  T  S++PA  H  A      IH 
Sbjct: 365 ELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHG 424

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K     D +V   L+DMY + G++D + ++F  +     V WN +I+ + + G+   
Sbjct: 425 YAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSN 484

Query: 418 ALNFFRQM-----------------LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           AL    +M                      +P+ IT +++L  C+    +++G+   H  
Sbjct: 485 ALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE-IHAY 543

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
                +   +     +VD++ + G L ++      MP + +   W  L+ AC +HG  E
Sbjct: 544 AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGE 601



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 219/429 (51%), Gaps = 17/429 (3%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P R + SW   +    +S +  EA+    EM + G   D     ++L   +   ++ +G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 150 LIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA---Y 205
            IH   VK G    ++ V+N L+NMY K G +    +VFD++ +RD VSWNS IAA   +
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT---SIVAQLNDCRNSRSVHGFIMRRGWF 262
           E+    + A   F  MQ   ++    TLVS+    S +  ++  R  + +HG+ +R G  
Sbjct: 173 EKWEQALEA---FRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-- 227

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            +     NA++ MYAKLG ++ + A+FE    +D++SWNT+I+ ++Q+   SEA+  F++
Sbjct: 228 DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL 287

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKC 381
           M     +  +  T  S+LPA SH+  L  G +IHA V++N  L  + FV + LVDMY  C
Sbjct: 288 M-VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC 346

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSL 440
            +++    +F  +       WNA+IS +  +G  +KAL  F +M+   G+ P+  T  S+
Sbjct: 347 RQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASV 406

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           + AC H    S  +   H    + G K        ++D++ R G + ++     +M VR 
Sbjct: 407 MPACVHCEAFS-NKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRD 465

Query: 501 DASIWGALL 509
             S W  ++
Sbjct: 466 RVS-WNTMI 473



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 41/338 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           MIS Y R G   +A+  F +    +GL P+  T   V+ A   C    + + IH   +KL
Sbjct: 370 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKL 429

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ D +V  +L+ MY R G  +++  +FD M VRD  SWN MI+GY  SG    AL +L
Sbjct: 430 GFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLL 489

Query: 118 DEM-RLEGVSM----------------DPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
            EM R+E                    + IT+ ++LP CA    I  G  IH Y +++ L
Sbjct: 490 HEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNML 549

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             ++ V + L++MYAK G +  + RVF++M  ++V++WN +I A         A   F  
Sbjct: 550 ASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKN 609

Query: 221 M-QQAG----IQPDLLTLVSLTS-------IVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           M  +AG     +P+ +T +++ +       I   LN     +  HG       +      
Sbjct: 610 MVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA----- 664

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLI 304
              VVD+  + G +  A  +   +P +   V +W++L+
Sbjct: 665 --CVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLL 700


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/699 (40%), Positives = 426/699 (60%), Gaps = 8/699 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAA 67
           L  A+  F   + ++G  P   TF  +LK C    +L  G+ +H  +   G + +   A 
Sbjct: 40  LPAALAAFVAMS-SAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVS 126
           +L +MY +      AR++FD MPVRD  +WNA+++GY ++G A  A++++  M+ E G  
Sbjct: 99  ALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D IT+ S+LP CA +  + +    H + ++ GLE  + V+  +++ Y K G +R A  V
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD M  ++ VSWN++I  Y Q+ D   A   F  M + G+    +++++      +L   
Sbjct: 219 FDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCL 278

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                VH  ++R G    +V + NA++ MY+K   ++ A  VF+ L  +  +SWN +I G
Sbjct: 279 DEGMRVHELLVRIG-LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            AQNG + +A+ +F  M+  N + P+  T VS++PA + +    Q   IH   I+  L  
Sbjct: 338 CAQNGCSEDAVRLFTRMQLEN-VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ 396

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV+V T L+DMY KCGR++ A  LF        + WNA+I  +G HG G  A+  F +M 
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G+ P+  TF+S+L+ACSH+GLV EG+ YF  M+E++G++P ++HYG MVDL GRAG L
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKL 516

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A  FIQ MP+ P  S++GA+LGAC++H N+EL   ++ ++FE+  +   Y+VL++NIY
Sbjct: 517 DEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIY 576

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           AN   W+ V  VR+     GL+KTPGWS I++ N++  FY+G+  H + ++IY  L  L 
Sbjct: 577 ANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLI 636

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K++GYVPD   +  DVE+D K  +L +HSE+LAIAFG+I + P + IQI KNLRVC 
Sbjct: 637 EEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCN 695

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCHN TK IS +T REII+RD  RFHHFKDG CSCGDYW
Sbjct: 696 DCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 217/399 (54%), Gaps = 6/399 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL---KACRNLVDGKKIHCSVLKL 57
           +++ Y R G    A++   +     G RPD  T   VL      R L   ++ H   ++ 
Sbjct: 131 LVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRS 190

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E  V VA ++L  YC+ G    AR +FD MP ++S SWNAMI GY Q+G++ EAL + 
Sbjct: 191 GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALF 250

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + M  EGV +  ++V + L  C     +  G+ +H  +V+ GL+ N+ V N LI MY+K 
Sbjct: 251 NRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKC 310

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A  VFD++  R  VSWN++I    Q+     A   FT MQ   ++PD  TLVS+ 
Sbjct: 311 KRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI 370

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             +A ++D   +R +HG+ +R     +DV +  A++DMYAK G +N A  +F     + V
Sbjct: 371 PALADISDPLQARWIHGYSIRLH-LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHV 429

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +I GY  +G    A+E+F+ M+    I PN+ T++S+L A SH G + +G +   
Sbjct: 430 ITWNAMIHGYGSHGFGKAAVELFEEMKSIG-IVPNETTFLSVLSACSHAGLVDEGREYFT 488

Query: 358 RVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            + ++  L   +     +VD+ G+ G++D+A +   ++P
Sbjct: 489 SMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMP 527


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/711 (39%), Positives = 429/711 (60%), Gaps = 10/711 (1%)

Query: 2    ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG 58
            ++ ++  G++  A+DCF    L S +  D  T   +L A     D   G++IH  V+K  
Sbjct: 866  LTEFLHAGQIVAAIDCFKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSS 924

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            F   V V+ SL++MY + G+   A K F + P  D  SWN MIS Y Q+   +EA+    
Sbjct: 925  FAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFR 984

Query: 119  EMRLEGVSMDPITVASILPVCARSDN---ILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            ++  +G+  D  T+AS+L  C+  D       G  +H+Y +K G+  + FVS  LI++Y+
Sbjct: 985  DLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYS 1044

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            K G M  A  +     + D+ SWN+I+  Y +SN    A   F+ M + GI  D +TL +
Sbjct: 1045 KGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLAT 1104

Query: 236  LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                   L + +  + +  + ++ G F  D+ + + V+DMY K G + +A  +F  +   
Sbjct: 1105 AIKASGCLINLKQGKQIQAYAIKLG-FNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP 1163

Query: 296  DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            D ++W T+I+GY +NG    A+ V+ +M   + + P++ T+ +++ A S + AL QG +I
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMR-VSGVQPDEYTFATLIKASSCLTALEQGKQI 1222

Query: 356  HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
            HA V+K     D FV T LVDMY KCG + DA  +F ++     V WNA++     HG  
Sbjct: 1223 HANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHV 1282

Query: 416  DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            D+ALN FR M   G++PD +TF+ +L+ACSHSGL SE  +YF  M + +GI P ++HY C
Sbjct: 1283 DEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSC 1342

Query: 476  MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
            +VD  GRAG +  A N I +MP +  AS++ ALLGACR  G+ E     +D+L  +D  +
Sbjct: 1343 LVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSD 1402

Query: 536  VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
               YVL+SNIYA   +W+ V + R++ + + +KK PG+S I+V NKV +F   +R+HP+ 
Sbjct: 1403 SSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQA 1462

Query: 596  EKIYDELRNLTAKMKSLG-YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              IY+++ +L  +++  G YVPD  F L DVEE+EKE  L  HSE+LAIAFG+IS+PP +
Sbjct: 1463 SLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSA 1522

Query: 655  PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             I++ KNLRVCGDCH+  K IS++T+REI++RD+NRFHHF++G CSCGDYW
Sbjct: 1523 TIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 259/530 (48%), Gaps = 46/530 (8%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV-DGKKIHCSVLKLGF 59
            M+  YV      EA+  F  F   SG  PDF     V+    + V + +K H   +K   
Sbjct: 789  MLKAYVENSFQDEALRFFSAFH-RSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKA-- 845

Query: 60   EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS----WNAMISGYCQSGNAVEALD 115
                                  A K+F   P  D GS    WN  ++ +  +G  V A+D
Sbjct: 846  ---------------------YAMKMF---PF-DQGSNIFAWNKKLTEFLHAGQIVAAID 880

Query: 116  ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
                +    +  D +T+  IL     +D++  G  IH  ++K      + VSN+L+NMY+
Sbjct: 881  CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            K G++  A + F    E D++SWN++I++Y Q+N  + A   F  + + G++PD  TL S
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 236  LTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            +    +  ++         VH + ++ G  + D  +  A++D+Y+K G ++ A  +  G 
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCG-IINDSFVSTALIDLYSKGGKMDEAEFLLHGK 1059

Query: 293  PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
               D+ SWN ++ GY ++  + +A+E F +M E   I  ++ T  + + A   +  L+QG
Sbjct: 1060 YDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG-IPIDEITLATAIKASGCLINLKQG 1118

Query: 353  IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +I A  IK     D++V++ ++DMY KCG + +A+ LF ++ R   V W  +IS +  +
Sbjct: 1119 KQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIEN 1178

Query: 413  GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLK 471
            G  D AL+ +  M   GV+PD  TF +L+ A S    + +G++ + ++++ ++     L 
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS----LD 1234

Query: 472  HY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            H+    +VD++ + G +  A+   + M VR     W A+L     HG+++
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVD 1283



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 225/487 (46%), Gaps = 55/487 (11%)

Query: 40   ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
            A  +L  GK+ H  ++  G   D ++  +L+ MY + G    AR++FD    RD  +WN+
Sbjct: 623  AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 100  MISGYCQSG-----NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            +++ Y Q       N +E   +   +R  G S+  +T+A +L +C  S  +     +H Y
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 155  IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
             VK G E +LFVS  L+N+Y K+G++  A  +FD+M ERD V WN ++ AY +++    A
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 215  HGFFTTMQQAGIQPDLLTLVSLTSIVAQLN-DCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
              FF+   ++G  PD     +L  ++  +N D  N+R  H                   V
Sbjct: 803  LRFFSAFHRSGFXPD---FSNLHCVIGGVNSDVSNNRKRHA----------------EQV 843

Query: 274  DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
              Y        A  +F      ++ +WN  +T +   G    AI+ F+ +     I  + 
Sbjct: 844  KAY--------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST-IGHDS 894

Query: 334  GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
             T V IL A      L  G +IHA VIK+     V V+  L++MY K G +  A   F  
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 394  VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
             P    + WN +IS +  +    +A+  FR +L +G++PD  T  S+L ACS      EG
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG 1011

Query: 454  QRYFHMMQEEFGIKPHLKHYGC-----------MVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            + YF +     G + H+    C           ++DL+ + G +  A  F+ +     D 
Sbjct: 1012 E-YFTL-----GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDFDL 1064

Query: 503  SIWGALL 509
            + W A++
Sbjct: 1065 ASWNAIM 1071



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L+ G + HAR++ +    D ++   L+ MY KCG +  A  +F +      V WN+I++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 409 HGIHGQGD-----KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +            +    F  + + G     +T   LL  C  SG V   +   H    +
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET-VHGYAVK 745

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G +  L   G +V+++ + G +G A      MP R DA +W  +L A
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/711 (39%), Positives = 429/711 (60%), Gaps = 10/711 (1%)

Query: 2    ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG 58
            ++ ++  G++  A+DCF    L S +  D  T   +L A     D   G++IH  V+K  
Sbjct: 866  LTEFLHAGQIVAAIDCFKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSS 924

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            F   V V+ SL++MY + G+   A K F + P  D  SWN MIS Y Q+   +EA+    
Sbjct: 925  FAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFR 984

Query: 119  EMRLEGVSMDPITVASILPVCARSDN---ILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            ++  +G+  D  T+AS+L  C+  D       G  +H+Y +K G+  + FVS  LI++Y+
Sbjct: 985  DLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYS 1044

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            K G M  A  +     + D+ SWN+I+  Y +SN    A   F+ M + GI  D +TL +
Sbjct: 1045 KGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLAT 1104

Query: 236  LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                   L + +  + +  + ++ G F  D+ + + V+DMY K G + +A  +F  +   
Sbjct: 1105 AIKASGCLINLKQGKQIQAYAIKLG-FNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP 1163

Query: 296  DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            D ++W T+I+GY +NG    A+ V+ +M   + + P++ T+ +++ A S + AL QG +I
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMR-VSGVQPDEYTFATLIKASSCLTALEQGKQI 1222

Query: 356  HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
            HA V+K     D FV T LVDMY KCG + DA  +F ++     V WNA++     HG  
Sbjct: 1223 HANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHV 1282

Query: 416  DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            D+ALN FR M   G++PD +TF+ +L+ACSHSGL SE  +YF  M + +GI P ++HY C
Sbjct: 1283 DEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSC 1342

Query: 476  MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
            +VD  GRAG +  A N I +MP +  AS++ ALLGACR  G+ E     +D+L  +D  +
Sbjct: 1343 LVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSD 1402

Query: 536  VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
               YVL+SNIYA   +W+ V + R++ + + +KK PG+S I+V NKV +F   +R+HP+ 
Sbjct: 1403 SSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQA 1462

Query: 596  EKIYDELRNLTAKMKSLG-YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              IY+++ +L  +++  G YVPD  F L DVEE+EKE  L  HSE+LAIAFG+IS+PP +
Sbjct: 1463 SLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSA 1522

Query: 655  PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             I++ KNLRVCGDCH+  K IS++T+REI++RD+NRFHHF++G CSCGDYW
Sbjct: 1523 TIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 259/530 (48%), Gaps = 46/530 (8%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV-DGKKIHCSVLKLGF 59
            M+  YV      EA+  F  F   SG  PDF     V+    + V + +K H   +K   
Sbjct: 789  MLKAYVENSFQDEALRFFSAFH-RSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKA-- 845

Query: 60   EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS----WNAMISGYCQSGNAVEALD 115
                                  A K+F   P  D GS    WN  ++ +  +G  V A+D
Sbjct: 846  ---------------------YAMKMF---PF-DQGSNIFAWNKKLTEFLHAGQIVAAID 880

Query: 116  ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
                +    +  D +T+  IL     +D++  G  IH  ++K      + VSN+L+NMY+
Sbjct: 881  CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            K G++  A + F    E D++SWN++I++Y Q+N  + A   F  + + G++PD  TL S
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 236  LTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            +    +  ++         VH + ++ G  + D  +  A++D+Y+K G ++ A  +  G 
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCG-IINDSFVSTALIDLYSKGGKMDEAEFLLHGK 1059

Query: 293  PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
               D+ SWN ++ GY ++  + +A+E F +M E   I  ++ T  + + A   +  L+QG
Sbjct: 1060 YDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG-IPIDEITLATAIKASGCLINLKQG 1118

Query: 353  IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +I A  IK     D++V++ ++DMY KCG + +A+ LF ++ R   V W  +IS +  +
Sbjct: 1119 KQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIEN 1178

Query: 413  GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLK 471
            G  D AL+ +  M   GV+PD  TF +L+ A S    + +G++ + ++++ ++     L 
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS----LD 1234

Query: 472  HY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            H+    +VD++ + G +  A+   + M VR     W A+L     HG+++
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVD 1283



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 225/487 (46%), Gaps = 55/487 (11%)

Query: 40   ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
            A  +L  GK+ H  ++  G   D ++  +L+ MY + G    AR++FD    RD  +WN+
Sbjct: 623  AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 100  MISGYCQSG-----NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            +++ Y Q       N +E   +   +R  G S+  +T+A +L +C  S  +     +H Y
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 155  IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
             VK G E +LFVS  L+N+Y K+G++  A  +FD+M ERD V WN ++ AY +++    A
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 215  HGFFTTMQQAGIQPDLLTLVSLTSIVAQLN-DCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
              FF+   ++G  PD     +L  ++  +N D  N+R  H                   V
Sbjct: 803  LRFFSAFHRSGFFPD---FSNLHCVIGGVNSDVSNNRKRHA----------------EQV 843

Query: 274  DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
              Y        A  +F      ++ +WN  +T +   G    AI+ F+ +     I  + 
Sbjct: 844  KAY--------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST-IGHDS 894

Query: 334  GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
             T V IL A      L  G +IHA VIK+     V V+  L++MY K G +  A   F  
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 394  VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
             P    + WN +IS +  +    +A+  FR +L +G++PD  T  S+L ACS      EG
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG 1011

Query: 454  QRYFHMMQEEFGIKPHLKHYGC-----------MVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            + YF +     G + H+    C           ++DL+ + G +  A  F+ +     D 
Sbjct: 1012 E-YFTL-----GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDFDL 1064

Query: 503  SIWGALL 509
            + W A++
Sbjct: 1065 ASWNAIM 1071



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L+ G + HAR++ +    D ++   L+ MY KCG +  A  +F +      V WN+I++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 409 HGIHGQGD-----KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +            +    F  + + G     +T   LL  C  SG V   +   H    +
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET-VHGYAVK 745

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G +  L   G +V+++ + G +G A      MP R DA +W  +L A
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/639 (43%), Positives = 417/639 (65%), Gaps = 17/639 (2%)

Query: 79   ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV----SMDPITVAS 134
            +N+A   +  +   +  SWN++I+   + G++VEAL     +R  G+    S  P T+ S
Sbjct: 1965 SNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKS 2024

Query: 135  ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
               +C    +++SG + H      G E +LFVS+ LI+MY+K G ++ A  +FD++  R+
Sbjct: 2025 CSALC----DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 195  VVSWNSIIAAYEQSNDPITAHGFF-------TTMQQAGIQP-DLLTLVSLTSIVAQLNDC 246
            VVSW S+I  Y Q+     A   F       T ++     P D + +VS+ S  ++++  
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 247  RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              +  VHGF++++G F   + +GN ++D YAK G    +  VF+ +  KD ISWN++I  
Sbjct: 2141 GITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAV 2199

Query: 307  YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            YAQ+GL+ EA+EVF  M     +  N  T  ++L A +H GALR G  IH +VIK  L +
Sbjct: 2200 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY 2259

Query: 367  DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            +V V T ++DMY KCGR++ A   F ++   +   W A+++ +G+HG+  +AL+ F +M+
Sbjct: 2260 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 2319

Query: 427  DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
              GV+P++ITFVS+L ACSH+GLV EG  +F+ M+ ++ I+P ++HYGCMVDLFGRAG L
Sbjct: 2320 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCL 2379

Query: 487  GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
              A+N I+ M ++PD  +WG+LLGACRIH N++LG +A+ +LFE+D +N GYYVL+SN+Y
Sbjct: 2380 NEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLY 2439

Query: 547  ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
            A+ G+W  V+ +R L ++R L K PG+S +E+  +V +F  G++ HP +E IY  L  LT
Sbjct: 2440 ADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLT 2499

Query: 607  AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
             +++ +GYVP+ + VL DV+E+EKE IL  HSE+LA+AFG+++S P + I I KNLRVCG
Sbjct: 2500 LELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCG 2559

Query: 667  DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            DCH   K IS++  R+ +VRDS RFHHFKDG+CSCGDYW
Sbjct: 2560 DCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 186/370 (50%), Gaps = 33/370 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  I++ GL  +  ++  LI++Y+  G + +A+ +F Q+      +WN II A   +  
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   +  M   GI  D  T   +             + VHG +++ G F  DV + N
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFVQN 164

Query: 271 AVVDMYAKLGIINSACAVFEGL-------------------------------PVKDVIS 299
            ++D Y K G    A  VFE +                               P K+V+S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  +I GY +N    EA+E+F+ M+  N I PN+ T VS++ A + +G L  G  IH   
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IKNC+   V++ T L+DMY KCG I DA+ +F  +PR S   WN++I+  G+HG G +AL
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           N F +M    V+PD ITF+ +L AC H   V EG  YF  M + +GI P  +HY CM +L
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 480 FGRAGHLGMA 489
           + R+ +L  A
Sbjct: 404 YARSNNLDEA 413



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 252/485 (51%), Gaps = 24/485 (4%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
            +I+   R G   EA+  F       GL P   +FP  +K+C    +LV G+  H      
Sbjct: 1986 VIADLARGGDSVEALRAFSSLR-KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVF 2044

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL--- 114
            GFE D+FV+++L+ MY + G    AR LFD++P+R+  SW +MI+GY Q+  A  AL   
Sbjct: 2045 GFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF 2104

Query: 115  -DIL-DEMRLE---GVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVS 167
             D L +E  +E    V +D + + S+L  C+R     I  G  +H ++VK G + ++ V 
Sbjct: 2105 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVG 2162

Query: 168  NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGI 226
            N L++ YAK G    + +VFD M E+D +SWNS+IA Y QS     A   F  M +  G+
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 227  QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            + + +TL ++    A     R  + +H  +++      +V +G +++DMY K G +  A 
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAK 2281

Query: 287  AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
              F+ +  K+V SW  ++ GY  +G A EA+++F  M     + PN  T+VS+L A SH 
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHA 2340

Query: 347  GALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
            G + +G    +A   K  +   +    C+VD++G+ G +++A +L  ++  +   V W +
Sbjct: 2341 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400

Query: 405  IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEE 463
            ++    IH   D      +++ +  + PD+  +  LL+   + +G  ++ +R   +M+  
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFE--LDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNR 2458

Query: 464  FGIKP 468
              +KP
Sbjct: 2459 QLVKP 2463



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 190/397 (47%), Gaps = 34/397 (8%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+ C+N    ++IH  +++ G   D  +   L+H+Y   G    A  LF  +    + +
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I     +G + +AL +   M  +G++ D  T   ++  C    +I  G ++H  ++
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA------------- 203
           K+G   ++FV NNLI+ Y K G  R AL+VF++M  R+VVSW ++I+             
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 204 ------------------AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                              Y ++  P  A   F  MQ   I P+  T+VSL     ++  
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R +H + ++    +  V +G A++DMY+K G I  A  VFE +P K + +WN++IT
Sbjct: 273 LTLGRGIHDYAIKNCIEI-GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMIT 331

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
               +GL  EA+ +F  ME  N + P+  T++ +L A  H+  +++G     R+ ++   
Sbjct: 332 SLGVHGLGQEALNLFSEMERVN-VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 366 FDVFV-ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
             +     C+ ++Y +   +D+A     +V   ++ P
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSP 427



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 34/260 (13%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
           LSE     Y+  +  G+  D +TFP V+KAC N +    GK +H S++K GF  DVFV  
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 68  SLLHMY-----CRFGLA--------NV------------------ARKLFDDMPVRDSGS 96
           +L+  Y      RF L         NV                  AR++FD++P ++  S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W AMI+GY ++    EAL++   M+ E +  +  T+ S++  C     +  G  IH Y +
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K+ +E  +++   LI+MY+K G ++ A+ VF+ M  + + +WNS+I +         A  
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 217 FFTTMQQAGIQPDLLTLVSL 236
            F+ M++  ++PD +T + +
Sbjct: 345 LFSEMERVNVKPDAITFIGV 364



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           LRQ   IHA++I++ L  D  +   L+ +Y   GRI  A+ LFYQ+    +  WN II  
Sbjct: 43  LRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           + I+G  ++AL  ++ M+ +G+  D  TF  ++ AC++   +  G +  H    ++G   
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSG 158

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            +     ++D + + GH   A    + M VR   S W  ++      G+++     + R+
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTVISGLISCGDLQ----EARRI 213

Query: 529 F-EVDSENVGYYVLMSNIY 546
           F E+ S+NV  +  M N Y
Sbjct: 214 FDEIPSKNVVSWTAMINGY 232



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y+R  +  EA++ F +      + P+ YT   ++KAC     L  G+ IH   +K 
Sbjct: 228 MINGYIRNQQPEEALELFKRMQ-AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E  V++  +L+ MY + G    A ++F+ MP +   +WN+MI+     G   EAL++ 
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            EM    V  D IT   +L  C    N+  G      + +H
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 427/711 (60%), Gaps = 10/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MIS YV+  +  +A+  F +  + SG RP+ + F  V+ AC   R+L  G+++H +V++ 
Sbjct: 176 MISAYVKNDQSGDAIGVFREM-VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E DVF A +L+ MY + G   +A  +F+ MP  D  SWNA ISG    G+   AL++L
Sbjct: 235 GYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELL 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T++S+L  CA +     G  IH ++VK   +F+ FV+  L++MYAK 
Sbjct: 295 LQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKH 354

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL--LTLVS 235
           G +  A +VFD M  RD++ WN++I+              F  M++ G+  D+   TL S
Sbjct: 355 GFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAS 414

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    A      ++R VH    + G   +  +I N ++D Y K G ++ A  VF+     
Sbjct: 415 VLKSTASSEAICHTRQVHALAEKIGLLSDSHVI-NGLIDSYWKCGQLDYAIKVFKESRSD 473

Query: 296 DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+IS  T++T  +Q     +AI++F QM+ +   + P+     S+L A + + A  QG +
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRK--GLEPDSFVLSSLLNACTSLSAYEQGKQ 531

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +HA +IK     DVF    LV  Y KCG I+DA   F  +P    V W+A+I     HG 
Sbjct: 532 VHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGH 591

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +AL+ F +MLDEGV P+HIT  S+L+AC+H+GLV + ++YF  M+E FGI    +HY 
Sbjct: 592 GKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYA 651

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CM+D+ GRAG L  A   + NMP + +A++WGALLGA R+H + ELG +A+++LF ++ E
Sbjct: 652 CMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPE 711

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
             G +VL++N YA+ G W+ + +VR L +D  +KK P  S +E+ +KV  F  G+++HP 
Sbjct: 712 KSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPM 771

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              IY +L  L   M   GYVP+    L DV+  EKE +L+ HSERLA+AF +IS+P  +
Sbjct: 772 TRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGA 831

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI++ KNLR+C DCH   K+IS+I  REII+RD NRFHHF +G CSCGDYW
Sbjct: 832 PIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/454 (33%), Positives = 233/454 (51%), Gaps = 14/454 (3%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L  G  +H  +LK G       +  LL +Y R  L + AR +FD++P     SW++++
Sbjct: 18  RSLFAGAHLHSHLLKSGLL--AGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLV 75

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           + Y  +G   +AL     MR  GV  +   +  +L  CA   ++  G  +H   V   L 
Sbjct: 76  TAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHALAVATRLV 132

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMM----ERDVVSWNSIIAAYEQSNDPITAHGF 217
            ++FV+N L+ +Y  FGM+  A R+FD+ +    ER+ VSWN++I+AY +++    A G 
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  M  +G +P+      + +      D    R VHG ++R G + +DV   NA+VDMY+
Sbjct: 193 FREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG-YEKDVFTANALVDMYS 251

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           KLG I  A  VFE +P  DV+SWN  I+G   +G    A+E+   M+    + PN  T  
Sbjct: 252 KLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLV-PNVFTLS 310

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+L A +  GA   G +IH  ++K    FD FVA  LVDMY K G +DDA  +F  +PR 
Sbjct: 311 SVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRR 370

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQR 455
             + WNA+IS     G+  + L+ F +M  EG+  D    T  S+L + + S  +    R
Sbjct: 371 DLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH-TR 429

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             H + E+ G+         ++D + + G L  A
Sbjct: 430 QVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYA 463



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 149/524 (28%), Positives = 264/524 (50%), Gaps = 13/524 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y   G   +A+  F       G+  + +  P VLK   ++  G ++H   +     
Sbjct: 74  LVTAYSNNGMPRDALLAFRAMR-GRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLV 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDM----PVRDSGSWNAMISGYCQSGNAVEALDI 116
            DVFVA +L+ +Y  FG+ + AR++FD+       R++ SWN MIS Y ++  + +A+ +
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM   G   +    + ++  C  S ++ +G  +H  +V+ G E ++F +N L++MY+K
Sbjct: 193 FREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  VF++M   DVVSWN+ I+          A      M+ +G+ P++ TL S+
Sbjct: 253 LGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSV 312

Query: 237 TSIVAQLNDCRNSRSVHGFIMRR-GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
               A        R +HGF+++    F E V +G  +VDMYAK G ++ A  VF+ +P +
Sbjct: 313 LKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG--LVDMYAKHGFLDDARKVFDFMPRR 370

Query: 296 DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+I WN LI+G + +G   E + +F +M +E  +++ N+ T  S+L + +   A+    +
Sbjct: 371 DLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQ 430

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +HA   K  L  D  V   L+D Y KCG++D A+ +F +      +    +++       
Sbjct: 431 VHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDH 490

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHY 473
           G+ A+  F QML +G+ PD     SLL AC+      +G Q + H+++ +F     +   
Sbjct: 491 GEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQF--TSDVFAG 548

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             +V  + + G +  A      +P R   S W A++G    HG+
Sbjct: 549 NALVYAYAKCGSIEDADMAFSGLPERGIVS-WSAMIGGLAQHGH 591



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 20/257 (7%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME----E 325
           N ++ +Y++  + ++A AVF+ +P    +SW++L+T Y+ NG+  +A+  F+ M      
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 326 CNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           CNE           LP        +R G ++HA  +   L  DVFVA  LV +YG  G +
Sbjct: 101 CNEF---------ALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMV 151

Query: 385 DDAMSLFYQV----PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           D+A  +F +        ++V WN +IS +  + Q   A+  FR+M+  G RP+   F  +
Sbjct: 152 DEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCV 211

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           + AC+ S  +  G R  H      G +  +     +VD++ + G + MA    + MP   
Sbjct: 212 VNACTGSRDLEAG-RQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPA-A 269

Query: 501 DASIWGALLGACRIHGN 517
           D   W A +  C  HG+
Sbjct: 270 DVVSWNAFISGCVTHGH 286


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/699 (40%), Positives = 426/699 (60%), Gaps = 8/699 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAA 67
           L  A+  F   + ++G  P   TF  +LK C    +L  G+ +H  +   G + +   A 
Sbjct: 40  LPAALAAFVAMS-SAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVS 126
           +L +MY +      AR++FD MPVRD  +WNA+++GY ++G A  A++++  M+ E G  
Sbjct: 99  ALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D IT+ S+LP CA +  + +    H + ++ GLE  + V+  +++ Y K G +R A  V
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD M  ++ VSWN++I  Y Q+ D   A   F  M + G+    +++++      +L   
Sbjct: 219 FDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCL 278

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                VH  ++R G    +V + NA++ MY+K   ++ A  VF+ L  +  +SWN +I G
Sbjct: 279 DEGMRVHELLVRIG-LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            AQNG + +A+ +F  M+  N + P+  T VS++PA + +    Q   IH   I+  L  
Sbjct: 338 CAQNGCSEDAVRLFTRMQLEN-VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ 396

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV+V T L+DMY KCGR++ A  LF        + WNA+I  +G HG G  A+  F +M 
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G+ P+  TF+S+L+ACSH+GLV EG+ YF  M+E++G++P ++HYG MVDL GRAG L
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKL 516

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A  FIQ MP+ P  S++GA+LGAC++H N+EL   ++ ++FE+  +   Y+VL++NIY
Sbjct: 517 DEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIY 576

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           AN   W+ V  VR+     GL+KTPGWS I++ N++  FY+G+  H + ++IY  L  L 
Sbjct: 577 ANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLI 636

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K++GYVPD   +  DVE+D K  +L +HSE+LAIAFG+I + P + IQI KNLRVC 
Sbjct: 637 EEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCN 695

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCHN TK IS +T REII+RD  RFHHFKDG CSCGDYW
Sbjct: 696 DCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 217/399 (54%), Gaps = 6/399 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL---KACRNLVDGKKIHCSVLKL 57
           +++ Y R G    A++   +     G RPD  T   VL      R L   ++ H   ++ 
Sbjct: 131 LVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRS 190

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E  V VA ++L  YC+ G    AR +FD MP ++S SWNAMI GY Q+G++ EAL + 
Sbjct: 191 GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALF 250

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + M  EGV +  ++V + L  C     +  G+ +H  +V+ GL+ N+ V N LI MY+K 
Sbjct: 251 NRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKC 310

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A  VFD++  R  VSWN++I    Q+     A   FT MQ   ++PD  TLVS+ 
Sbjct: 311 KRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI 370

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             +A ++D   +R +HG+ +R     +DV +  A++DMYAK G +N A  +F     + V
Sbjct: 371 PALADISDPLQARWIHGYSIRLH-LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHV 429

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +I GY  +G    A+E+F+ M+    I PN+ T++S+L A SH G + +G +   
Sbjct: 430 ITWNAMIHGYGSHGFGKAAVELFEEMKSIG-IVPNETTFLSVLSACSHAGLVDEGREYFT 488

Query: 358 RVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            + ++  L   +     +VD+ G+ G++D+A +   ++P
Sbjct: 489 SMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMP 527


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 428/706 (60%), Gaps = 21/706 (2%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL------VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           ++  L   + P  +T   V+ AC NL      + GK++H   L+ G E + F+  +L+ M
Sbjct: 100 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAM 158

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    ++ L      RD  +WN ++S  CQ+   +EAL+ L EM LEGV  D  T+
Sbjct: 159 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 218

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +S+LP C+  + + +G  +H Y +K+G L+ N FV + L++MY     +    RVFD M 
Sbjct: 219 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 278

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R +  WN++IA Y Q+     A   F  M++ AG+  +  T+  +     +        
Sbjct: 279 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 338

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           ++HGF+++RG    D  + N ++DMY++LG I+ A  +F  +  +D+++WNT+ITGY  +
Sbjct: 339 AIHGFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 311 GLASEAIEVFQMMEECNE----------INPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
               +A+ +   M+              + PN  T ++ILP+ + + AL +G +IHA  I
Sbjct: 398 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 457

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DV V + LVDMY KCG +  +  +F Q+P+ + + WN II  +G+HG G +A++
Sbjct: 458 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 517

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             R M+ +GV+P+ +TF+S+  ACSHSG+V EG R F++M+ ++G++P   HY C+VDL 
Sbjct: 518 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 577

Query: 481 GRAGHLGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           GRAG +  A+  +  MP     A  W +LLGA RIH N+E+G +A+  L +++     +Y
Sbjct: 578 GRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHY 637

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL++NIY++ G W+   EVR   +++G++K PG S IE  ++V  F  G+ +HP+ EK+ 
Sbjct: 638 VLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLS 697

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  L  +M+  GYVPD S VL +VEEDEKE +L  HSE+LAIAFGI+++ P + I++ 
Sbjct: 698 GYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 757

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC DCH  TKFIS+I +REII+RD  RFH FK+G CSCGDYW
Sbjct: 758 KNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  236 bits (601), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/510 (29%), Positives = 255/510 (50%), Gaps = 21/510 (4%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANV 81
           G++PD Y FP +LKA  +L D   GK+IH  V K G+  D V VA +L+++Y + G    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
             K+FD +  R+  SWN++IS  C       AL+    M  E V     T+ S++  C+ 
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 142 ---SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
               + ++ G  +H Y ++ G E N F+ N L+ MY K G +  +  +      RD+V+W
Sbjct: 125 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 183

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N+++++  Q+   + A  +   M   G++PD  T+ S+    + L   R  + +H + ++
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 243

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G   E+  +G+A+VDMY     + S   VF+G+  + +  WN +I GY+QN    EA+ 
Sbjct: 244 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 303

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F  MEE   +  N  T   ++PA    GA  +   IH  V+K  L  D FV   L+DMY
Sbjct: 304 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMY 363

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGV------ 430
            + G+ID AM +F ++     V WN +I+ +      + AL    +M  L+  V      
Sbjct: 364 SRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASR 423

Query: 431 ---RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
              +P+ IT +++L +C+    +++G+   H    +  +   +     +VD++ + G L 
Sbjct: 424 VSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 482

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           M+      +P + +   W  ++ A  +HGN
Sbjct: 483 MSRKVFDQIP-QKNVITWNVIIMAYGMHGN 511


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/708 (39%), Positives = 425/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           + S YV+     EAV  F +  + SG+ P+ ++   +L AC  L +G   +KIH  +LK+
Sbjct: 154 LFSCYVQSELCGEAVGLFKEM-VRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKM 212

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D F A +L+ MY + G    A  +F D+   D  SWNA+I+G         AL +L
Sbjct: 213 GLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLL 272

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           DEM+  G   +  T++S L  CA       G  +H  ++K     +LF +  L++MY+K 
Sbjct: 273 DEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKC 332

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            MM  A R +D M ++D+++WN++I+ Y Q  D + A   F+ M    I  +  TL ++ 
Sbjct: 333 EMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVL 392

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             VA L   +  + +H   ++ G +  D  + N+++D Y K   I+ A  +FE    +D+
Sbjct: 393 KSVASLQAIKVCKQIHTISIKSGIY-SDFYVINSLLDTYGKCNHIDEASKIFEERTWEDL 451

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +++ ++IT Y+Q G   EA++++  M++  +I P+     S+L A +++ A  QG ++H 
Sbjct: 452 VAYTSMITAYSQYGDGEEALKLYLQMQDA-DIKPDPFICSSLLNACANLSAYEQGKQLHV 510

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             IK     D+F +  LV+MY KCG I+DA   F ++P    V W+A+I  +  HG G +
Sbjct: 511 HAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKE 570

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QML +GV P+HIT VS+L AC+H+GLV+EG++YF  M+  FGIKP  +HY CM+
Sbjct: 571 ALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMI 630

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G L  A   + ++P   D  +WGALLGA RIH N+ELG  A+  LF+++ E  G
Sbjct: 631 DLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSG 690

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++NIYA+ G WE V +VR   +D  +KK PG S IE+ +KV  F  G+R+H + ++
Sbjct: 691 THVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDE 750

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   +   GY       + +V++ EKE +L  HSE+LA+AFG+I++PP  PI+
Sbjct: 751 IYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIR 810

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH + KF+ +I  REIIVRD NRFHHFKDG CSCGDYW
Sbjct: 811 VKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 280/520 (53%), Gaps = 8/520 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+ G + EA+  F +  L  G++ + +TFP VLKAC   R+L  G+K+H   +  
Sbjct: 53  LLSGYVQNGFVEEALLVFNEMCLL-GVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVT 111

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D FVA +L+ MY + GL + +R+LF  +  R+  SWNA+ S Y QS    EA+ + 
Sbjct: 112 GFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLF 171

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G+  +  +++ IL  CA       G  IH  ++K GL+ + F +N L++MY+K 
Sbjct: 172 KEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKA 231

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A+ VF  +   DVVSWN+IIA     +    A      M+ +G +P++ TL S  
Sbjct: 232 GEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSAL 291

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +      R +H  +++      D+     +VDMY+K  +++ A   ++ +P KD+
Sbjct: 292 KACAAMGFKELGRQLHSSLIKMDAH-SDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI 350

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN LI+GY+Q G   +A+ +F  M    +I+ NQ T  ++L + + + A++   +IH 
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFS-EDIDFNQTTLSTVLKSVASLQAIKVCKQIHT 409

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             IK+ +  D +V   L+D YGKC  ID+A  +F +      V + ++I+ +  +G G++
Sbjct: 410 ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEE 469

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  + QM D  ++PD     SLL AC++     +G++  H+   +FG    +     +V
Sbjct: 470 ALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ-LHVHAIKFGFMCDIFASNSLV 528

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +++ + G +  A      +P R   S W A++G    HG+
Sbjct: 529 NMYAKCGSIEDADRAFSEIPNRGIVS-WSAMIGGYAQHGH 567



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 161/568 (28%), Positives = 266/568 (46%), Gaps = 51/568 (8%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           ++H  ++K GF  D  +   L+ +Y +      ARKL D+    D  SW++++SGY Q+G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              EAL + +EM L GV  +  T  S+L  C+   ++  G  +H   V  G E + FV+N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L+ MYAK G++  + R+F  ++ER+VVSWN++ + Y QS     A G F  M ++GI P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           +  ++  + +  A L +    R +HG +++ G  + D    NA+VDMY+K G I  A AV
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDL-DQFSANALVDMYSKAGEIEGAVAV 240

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ +   DV+SWN +I G   +     A+ +   M+      PN  T  S L A + +G 
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSG-TRPNMFTLSSALKACAAMGF 299

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
              G ++H+ +IK     D+F A  LVDMY KC  +DDA   +  +P+   + WNA+IS 
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +   G    A++ F +M  E +  +  T  ++L + +    +   ++  H +  + GI  
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQ-IHTISIKSGIYS 418

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNF----------------------------------IQ 494
                  ++D +G+  H+  A                                     +Q
Sbjct: 419 DFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQ 478

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV------LMSNIYAN 548
           +  ++PD  I  +LL AC       L A    +   V +   G+         + N+YA 
Sbjct: 479 DADIKPDPFICSSLLNAC-----ANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAK 533

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            G  E  D   S   +RG+     WS++
Sbjct: 534 CGSIEDADRAFSEIPNRGI---VSWSAM 558



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           +++HA +IK     D  +   LV +Y KC R   A  L  +      V W++++S +  +
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G  ++AL  F +M   GV+ +  TF S+L ACS    ++ G R  H M    G +     
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG-RKVHGMAVVTGFESDGFV 119

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
              +V ++ + G L  +      +  R   S W AL  +C +   +
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVS-WNALF-SCYVQSEL 163


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/708 (40%), Positives = 434/708 (61%), Gaps = 9/708 (1%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG 58
           IS  V+ G   EA+D F +   + G   + YT   VL+ C  L     G+++H ++LK G
Sbjct: 237 ISGCVQNGMFLEALDLFRRMQ-SDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCG 295

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E+++   A LL MY R G  + A ++F ++  +D  SWN+M+S Y Q+    EA+D   
Sbjct: 296 TEFNIQCNA-LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFG 354

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           EM   G + D   + S+L        +++G  +H Y VK  L+ +L ++N L++MY K  
Sbjct: 355 EMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCY 414

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  + RVFD+M  +D VSW +IIA Y QS+    A G F T Q+ GI+ D + + S+  
Sbjct: 415 SVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILE 474

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             + L      + VH + +R G    D+I+ N ++D+Y + G +  A  +FE L  KD++
Sbjct: 475 ACSGLKSISLLKQVHSYAIRNGLL--DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIV 532

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           +W +++  +A+NGL  EA+ +F  M     I P+    V IL A + + +L +G +IH  
Sbjct: 533 TWTSMVNCFAENGLLHEAVALFGKMLNAG-IQPDSVALVGILGAIAGLSSLTKGKEIHGF 591

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           +I+     +  V + LVDMY  CG ++ A+ +F +      V W A+I+  G+HG G +A
Sbjct: 592 LIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQA 651

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           +  F++ML+ GV PDH++F++LL ACSHS LV EG+ Y  MM  ++ ++P  +HY C+VD
Sbjct: 652 IYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVD 711

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GR+G    A+ FI++MP+ P + +W ALLGACRIH N EL  +A+D+L E++ +N G 
Sbjct: 712 LLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGN 771

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SN++A +GKW  V E+R+   ++GL+K P  S IE+ N V  F   + +H   + I
Sbjct: 772 YVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAI 831

Query: 599 YDELRNLTAKMKSLG-YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           + +L  +T K++  G YV D SFVL DV E+EK  +L  HSERLAI+FG+IS+   +P++
Sbjct: 832 HLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLR 891

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH +TK +S++ EREI+VRD+NRFHHF  G CSCGD+W
Sbjct: 892 IAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 167/552 (30%), Positives = 290/552 (52%), Gaps = 17/552 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLT---SGLRPDFYTFPPVLKACRNLVDGK---KIHCSV 54
           +I   +  G   EAV  +     +   +G  PD  T   VLKAC    DG+   ++H   
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLA 189

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEA 113
           +K G +    VA +L+ MY + GL + A ++F+ M   RD  SWN+ ISG  Q+G  +EA
Sbjct: 190 VKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           LD+   M+ +G SM+  T   +L VCA    +  G  +H  ++K G EFN+   N L+ M
Sbjct: 250 LDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNI-QCNALLVM 308

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YA+ G +  ALRVF ++ ++D +SWNS+++ Y Q+     A  FF  M Q G  PD   +
Sbjct: 309 YARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACI 368

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           VSL S V  L    N R VH + +++     D+ I N ++DMY K   +  +  VF+ + 
Sbjct: 369 VSLLSAVGHLGRLINGREVHAYAVKQR-LDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           +KD +SW T+I  YAQ+   SEAI  F+  ++   I  +     SIL A S + ++    
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQK-EGIKVDPMMMGSILEACSGLKSISLLK 486

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++H+  I+N L  D+ +   ++D+YG+CG +  A+++F  + +   V W ++++C   +G
Sbjct: 487 QVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENG 545

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKH 472
              +A+  F +ML+ G++PD +  V +L A +    +++G+  +  +++ +F ++  +  
Sbjct: 546 LLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV-- 603

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-- 530
              +VD++   G +  A         + D  +W A++ A  +HG+ +       R+ E  
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETG 662

Query: 531 VDSENVGYYVLM 542
           V  ++V +  L+
Sbjct: 663 VSPDHVSFLALL 674



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 252/489 (51%), Gaps = 15/489 (3%)

Query: 30  DFYTFPPVLKACRNLV-DGKKIHCSVLKLGFEWD---VFVAASLLHMYCRFGLANVARKL 85
           D Y +   L A R  V +G+++H   +  G   D    F+A  LL MY + G    A +L
Sbjct: 56  DHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRL 115

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR----LEGVSMDPITVASILPVCAR 141
           FD MP R   SWNA+I     SG A EA+ +   MR    + G + D  T+AS+L  C  
Sbjct: 116 FDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGA 175

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNS 200
             +   G  +H   VK GL+ +  V+N L+ MYAK G++  ALRVF+ M + RDV SWNS
Sbjct: 176 EGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNS 235

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
            I+   Q+   + A   F  MQ  G   +  T V +  + A+L    + R +H  +++ G
Sbjct: 236 AISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCG 295

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
              E  I  NA++ MYA+ G ++SA  VF  +  KD ISWN++++ Y QN L +EAI+ F
Sbjct: 296 --TEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFF 353

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
             M + N  NP+    VS+L A  H+G L  G ++HA  +K  L  D+ +A  L+DMY K
Sbjct: 354 GEMVQ-NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIK 412

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           C  ++ +  +F ++     V W  II+C+    +  +A+  FR    EG++ D +   S+
Sbjct: 413 CYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSI 472

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L ACS    +S  ++          +   LK+   ++D++G  G +  A N  + M  + 
Sbjct: 473 LEACSGLKSISLLKQVHSYAIRNGLLDLILKNR--IIDIYGECGEVCYALNIFE-MLDKK 529

Query: 501 DASIWGALL 509
           D   W +++
Sbjct: 530 DIVTWTSMV 538


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 428/706 (60%), Gaps = 21/706 (2%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL------VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           ++  L   + P  +T   V+ AC NL      + GK++H   L+ G E + F+  +L+ M
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAM 245

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    ++ L      RD  +WN ++S  CQ+   +EAL+ L EM LEGV  D  T+
Sbjct: 246 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +S+LP C+  + + +G  +H Y +K+G L+ N FV + L++MY     +    RVFD M 
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R +  WN++IA Y Q+     A   F  M++ AG+  +  T+  +     +        
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           ++HGF+++RG    D  + N ++DMY++LG I+ A  +F  +  +D+++WNT+ITGY  +
Sbjct: 426 AIHGFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 311 GLASEAIEVFQMMEECNE----------INPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
               +A+ +   M+              + PN  T ++ILP+ + + AL +G +IHA  I
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DV V + LVDMY KCG +  +  +F Q+P+ + + WN II  +G+HG G +A++
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             R M+ +GV+P+ +TF+S+  ACSHSG+V EG R F++M+ ++G++P   HY C+VDL 
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664

Query: 481 GRAGHLGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           GRAG +  A+  +  MP     A  W +LLGA RIH N+E+G +A+  L +++     +Y
Sbjct: 665 GRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHY 724

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL++NIY++ G W+   EVR   +++G++K PG S IE  ++V  F  G+ +HP+ EK+ 
Sbjct: 725 VLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLS 784

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  L  +M+  GYVPD S VL +VEEDEKE +L  HSE+LAIAFGI+++ P + I++ 
Sbjct: 785 GYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 844

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC DCH  TKFIS+I +REII+RD  RFH FK+G CSCGDYW
Sbjct: 845 KNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 263/530 (49%), Gaps = 22/530 (4%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
           VR   L EAV  +    +  G++PD Y FP +LKA  +L D   GK+IH  V K G+  D
Sbjct: 73  VRSNLLREAVLTYVDMIVL-GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD 131

Query: 63  -VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V VA +L+++Y + G      K+FD +  R+  SWN++IS  C       AL+    M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 122 LEGVSMDPITVASILPVCAR---SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            E V     T+ S++  C+     + ++ G  +H Y ++ G E N F+ N L+ MY K G
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLG 250

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  +  +      RD+V+WN+++++  Q+   + A  +   M   G++PD  T+ S+  
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             + L   R  + +H + ++ G   E+  +G+A+VDMY     + S   VF+G+  + + 
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            WN +I GY+QN    EA+ +F  MEE   +  N  T   ++PA    GA  +   IH  
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V+K  L  D FV   L+DMY + G+ID AM +F ++     V WN +I+ +      + A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 419 LNFFRQM--LDEGV---------RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           L    +M  L+  V         +P+ IT +++L +C+    +++G+   H    +  + 
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLA 549

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             +     +VD++ + G L M+      +P + +   W  ++ A  +HGN
Sbjct: 550 TDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 197/419 (47%), Gaps = 11/419 (2%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W  ++    +S    EA+    +M + G+  D     ++L   A   ++  G  IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 157 KHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K G   + + V+N L+N+Y K G      +VFD++ ER+ VSWNS+I++         A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQL---NDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             F  M    ++P   TLVS+ +  + L         + VH + +R+G     +I  N +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTL 242

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V MY KLG + S+  +      +D+++WNT+++   QN    EA+E  + M     + P+
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPD 301

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T  S+LPA SH+  LR G ++HA  +KN  L  + FV + LVDMY  C ++     +F
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLV 450
             +       WNA+I+ +  +    +AL  F  M +  G+  +  T   ++ AC  SG  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           S  +   H    + G+         ++D++ R G + +A      M  R D   W  ++
Sbjct: 422 SR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 14/219 (6%)

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  L+    ++ L  EA+  +  M     I P+   + ++L A + +  +  G +IHA V
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 360 IKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            K     D V VA  LV++Y KCG       +F ++   + V WN++IS      + + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHY- 473
           L  FR MLDE V P   T VS++TACS+     GL+   Q + + ++     K  L  + 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-----KGELNSFI 238

Query: 474 -GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
              +V ++G+ G L  +   + +   R D   W  +L +
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSS 276


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 428/706 (60%), Gaps = 21/706 (2%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL------VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           ++  L   + P  +T   V+ AC NL      + GK++H   L+ G E + F+  +L+ M
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAM 245

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    ++ L      RD  +WN ++S  CQ+   +EAL+ L EM LEGV  D  T+
Sbjct: 246 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +S+LP C+  + + +G  +H Y +K+G L+ N FV + L++MY     +    RVFD M 
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R +  WN++IA Y Q+     A   F  M++ AG+  +  T+  +     +        
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           ++HGF+++RG    D  + N ++DMY++LG I+ A  +F  +  +D+++WNT+ITGY  +
Sbjct: 426 AIHGFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 311 GLASEAIEVFQMMEECNE----------INPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
               +A+ +   M+              + PN  T ++ILP+ + + AL +G +IHA  I
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DV V + LVDMY KCG +  +  +F Q+P+ + + WN II  +G+HG G +A++
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             R M+ +GV+P+ +TF+S+  ACSHSG+V EG R F++M+ ++G++P   HY C+VDL 
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664

Query: 481 GRAGHLGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           GRAG +  A+  +  MP     A  W +LLGA RIH N+E+G +A+  L +++     +Y
Sbjct: 665 GRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHY 724

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL++NIY++ G W+   EVR   +++G++K PG S IE  ++V  F  G+ +HP+ EK+ 
Sbjct: 725 VLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLS 784

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  L  +M+  GYVPD S VL +VEEDEKE +L  HSE+LAIAFGI+++ P + I++ 
Sbjct: 785 GYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 844

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC DCH  TKFIS+I +REII+RD  RFH FK+G CSCGDYW
Sbjct: 845 KNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 263/530 (49%), Gaps = 22/530 (4%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
           VR   L EAV  +    +  G++PD Y FP +LKA  +L D   GK+IH  V K G+  D
Sbjct: 73  VRSNLLREAVLTYVDMIVL-GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD 131

Query: 63  -VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V VA +L+++Y + G      K+FD +  R+  SWN++IS  C       AL+    M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 122 LEGVSMDPITVASILPVCAR---SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            E V     T+ S++  C+     + ++ G  +H Y ++ G E N F+ N L+ MY K G
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLG 250

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  +  +      RD+V+WN+++++  Q+   + A  +   M   G++PD  T+ S+  
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             + L   R  + +H + ++ G   E+  +G+A+VDMY     + S   VF+G+  + + 
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            WN +I GY+QN    EA+ +F  MEE   +  N  T   ++PA    GA  +   IH  
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V+K  L  D FV   L+DMY + G+ID AM +F ++     V WN +I+ +      + A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 419 LNFFRQM--LDEGV---------RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           L    +M  L+  V         +P+ IT +++L +C+    +++G+   H    +  + 
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLA 549

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             +     +VD++ + G L M+      +P + +   W  ++ A  +HGN
Sbjct: 550 TDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 197/419 (47%), Gaps = 11/419 (2%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W  ++    +S    EA+    +M + G+  D     ++L   A   ++  G  IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 157 KHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K G   + + V+N L+N+Y K G      +VFD++ ER+ VSWNS+I++         A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQL---NDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             F  M    ++P   TLVS+ +  + L         + VH + +R+G     +I  N +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTL 242

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V MY KLG + S+  +      +D+++WNT+++   QN    EA+E  + M     + P+
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPD 301

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T  S+LPA SH+  LR G ++HA  +KN  L  + FV + LVDMY  C ++     +F
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLV 450
             +       WNA+I+ +  +    +AL  F  M +  G+  +  T   ++ AC  SG  
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           S  +   H    + G+         ++D++ R G + +A      M  R D   W  ++
Sbjct: 422 SR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 14/219 (6%)

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  L+    ++ L  EA+  +  M     I P+   + ++L A + +  +  G +IHA V
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 360 IKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            K     D V VA  LV++Y KCG       +F ++   + V WN++IS      + + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHY- 473
           L  FR MLDE V P   T VS++TACS+     GL+   Q + + ++     K  L  + 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-----KGELNSFI 238

Query: 474 -GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
              +V ++G+ G L  +   + +   R D   W  +L +
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSS 276


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/682 (39%), Positives = 416/682 (60%), Gaps = 1/682 (0%)

Query: 24  TSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           T  L P       +L+  ++L   ++IH  ++  G   + F++ SL++ Y   GL   A+
Sbjct: 17  TQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAK 76

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           ++F   P ++  SW  +ISG  ++   VEA+D+  EM +     + +T++S+LP  A   
Sbjct: 77  QIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLG 136

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            I     +H + V+ G E N+FV   L++MY+KFG M  A ++F+ M ER+VV+WN+I++
Sbjct: 137 LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVS 196

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y        A   F  M++ G+  D  T++SL      +   +    +HGFI+R G + 
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTG-YE 255

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D  I  A++D+Y     ++ A  VF  + VKDV +W  ++TG++       AI+ F  M
Sbjct: 256 NDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM 315

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                +  +    + IL + SH GAL+QG ++HA  IK C   ++FV + ++DMY  CG 
Sbjct: 316 LGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGN 375

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++DA   FY +     V WNA+I+ +G++G G  A++ F QM   G+ PD  TFVS+L A
Sbjct: 376 LEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYA 435

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH+G+V EG + F+ M +   + P+L+HY C++D+ GRAG L  A++FI NMP +PD  
Sbjct: 436 CSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFD 495

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           ++  LLGACRIHGN++LG   S ++FE++  + GYYVL+SN+YA  G WEGV   R+  R
Sbjct: 496 VYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLR 555

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            + +KK PG+SSIE+N ++  F  G + HP+Y KI   L+ L  K+K  GYVP+ + +LQ
Sbjct: 556 SKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQ 615

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DV +D K+ IL  HSE++AIAFG++ + P++ I+I KNLR C DCH  +KF+S++  R +
Sbjct: 616 DVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVL 675

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           +++D+NRFH F+DG+CSC DYW
Sbjct: 676 VIKDANRFHVFQDGVCSCRDYW 697



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 218/432 (50%), Gaps = 41/432 (9%)

Query: 1   MISVYVRCGRLSEAV------------------------DCF------YQFTLTSGLRPD 30
           +++ YV CG L++A                         DCF      ++  +    +P+
Sbjct: 62  LMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPN 121

Query: 31  FYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
             T   VL A  NL      K +HC  ++ GFE +VFV  +L+ MY +FG   VAR+LF+
Sbjct: 122 AVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFE 181

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            M  R+  +WNA++SGY   G + EA+D+ + MR +G+ +D  T+ S++P       +  
Sbjct: 182 SMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQV 241

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH +I++ G E +  +   L+++Y     +  A RVF +M  +DV +W  ++  +  
Sbjct: 242 GTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSS 301

Query: 208 SNDPITAHGFFTTMQQAGIQP---DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
                 A   F  M   GIQ    D + L+ + S  +     +  R VH   ++   F  
Sbjct: 302 GRHWDRAIKHFNKM--LGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT-CFAN 358

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           ++ +G+AV+DMYA  G +  A   F G+  KDV+ WN +I G   NG  ++AI++F  M+
Sbjct: 359 NIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMK 418

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGR 383
               ++P++ T+VS+L A SH G + +G++I   ++K      ++    C++D+ G+ G+
Sbjct: 419 GSG-LDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQ 477

Query: 384 IDDAMSLFYQVP 395
           +D A S    +P
Sbjct: 478 LDAAYSFINNMP 489


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/683 (39%), Positives = 419/683 (61%), Gaps = 3/683 (0%)

Query: 24  TSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           T  L P   +   +L+  ++L   ++IH  ++  G   + F++ SL++ Y   GL   A+
Sbjct: 17  TQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAK 76

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           ++F   P ++  SW  +ISG  ++   VEA+D+  EM +     + +T++S+LP  A   
Sbjct: 77  QIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLG 136

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            I     +H + V+ G E N+FV   L++MY+KFG M  A ++F+ M ER+VVSWN+I++
Sbjct: 137 LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVS 196

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y        A   F  M++ G+  D  T++SL      +   +    +HGFI+R G + 
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTG-YE 255

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D  I  A++D+Y     ++ A  VF  + VKDV +W  ++TG++       AI+ F  M
Sbjct: 256 NDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM 315

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                +  +    + IL + SH GAL+QG ++HA  IK C   ++FV + ++DMY  CG 
Sbjct: 316 LGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGN 375

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++DA   FY +     V WNA+I+ +G++G G  A++ F QM   G+ PD  TFVS+L A
Sbjct: 376 LEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYA 435

Query: 444 CSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           CSH+G+V EG Q ++HM++    I P+L+HY C++D+ GRAG L  A++FI NMP +PD 
Sbjct: 436 CSHAGMVYEGLQIFYHMVKTSHDI-PNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
            ++  LLGACRIHGN++LG   S ++FE++  + GYYVL+SN+YA  G WEGV   R+  
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASL 554

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           R + LKK PG+SSIE+N ++  F  G + HP+Y KI   L+ L  K+K  GYVP+ + +L
Sbjct: 555 RSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLL 614

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
           QDV +D K+ IL  HSE++AIAFG++ + P + I+I KNLR C DCH+ +KF+S++  R 
Sbjct: 615 QDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRV 674

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           ++++D+NRFH F+DG+CSC DYW
Sbjct: 675 LVIKDANRFHVFQDGVCSCRDYW 697



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 219/433 (50%), Gaps = 43/433 (9%)

Query: 1   MISVYVRCGRLS-------------------------------EAVDCFYQFTLTSGLRP 29
           +++ YV CG L+                               EA+D F + T+    +P
Sbjct: 62  LMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTM-GNFKP 120

Query: 30  DFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           +  T   VL A  NL      K +HC  ++ GFE +VFV  +L+ MY +FG   VAR+LF
Sbjct: 121 NAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLF 180

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           + M  R+  SWNA++SGY   G + EA+D+ + MR +G+ +D  T+ S++P       + 
Sbjct: 181 ESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQ 240

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  IH +I++ G E +  +   L+++Y     +  A RVF +M  +DV +W  ++  + 
Sbjct: 241 VGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFS 300

Query: 207 QSNDPITAHGFFTTMQQAGIQP---DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                  A   F  M   GIQ    D + L+ + S  +     +  R VH   ++   F 
Sbjct: 301 SGRHWDRAIKHFNKM--LGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKT-CFA 357

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            ++ +G+AV+DMYA  G +  A   F G+  KDV+ WN +I G   NG  ++AI++F  M
Sbjct: 358 NNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQM 417

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCG 382
           +  + ++P++ T+VS+L A SH G + +G++I   ++K      ++    C++D+ G+ G
Sbjct: 418 KG-SGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAG 476

Query: 383 RIDDAMSLFYQVP 395
           ++D A S    +P
Sbjct: 477 QLDAAYSFINNMP 489


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/709 (39%), Positives = 431/709 (60%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL-KACR--NLVDGKKIHCSVLKL 57
           ++S Y+  G+ S  + CF    + S L  D  TF  VL  A R  +L  G+++HC  LKL
Sbjct: 293 ILSGYLHAGQYSALLKCFMDM-VESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKL 351

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +  + V+ SL++MYC+     +AR +F++M  RD  SWN++I+G  QS   VEA+ + 
Sbjct: 352 GLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF 411

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++   G+  D  T+ S+L   +     LS    IH++ +K     + FVS  LI+ Y++
Sbjct: 412 MQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSR 471

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              M+ A  +F +    D+V+WN++++ Y QS+D       F  M + G + D  TL ++
Sbjct: 472 NRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATV 530

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                 L      + VH + ++ G+ + D+ + + ++DMY K G +++A   F+ +PV D
Sbjct: 531 LKTCGFLFAINQGKQVHAYAIKSGYDL-DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 589

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            ++W TLI+G  +NG    A+ VF  M     + P++ T  ++  A S + AL QG +IH
Sbjct: 590 DVAWTTLISGCIENGEEERALHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A  +K     D FV T LVDMY KCG IDDA  LF ++   +   WNA++     HG+G 
Sbjct: 649 ANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F+QM   G++PD +TF+ +L+ACSHSGLVSE  +Y   M  ++GIKP ++HY C+
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
            D  GRAG +  A N I +M +   AS++  LL ACR+ G+ E G   + +L E++  + 
Sbjct: 769 ADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 828

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SN+YA   KW+ +   R++ +   +KK PG+S IEV NK+ +F   +R++P+ E
Sbjct: 829 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTE 888

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            IY +++++   +K  GYVP+  F L DVEE+EKE  L  HSE+LA+AFG++S+PP +PI
Sbjct: 889 LIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPI 948

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVCGDCHN  K+IS++ +REI++RD+NRFH FKDGICSCGDYW
Sbjct: 949 RVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 237/488 (48%), Gaps = 14/488 (2%)

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D   V +  S N ++SGY  +G     L    +M    +  D +T   +L    R D++ 
Sbjct: 280 DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLA 339

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H   +K GL+  L VSN+LINMY K   +  A  VF+ M ERD++SWNS+IA   
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN-SRSVHGFIMRRGWFMED 265
           QS+  + A   F  + + G++PD  T+ S+    + L +  + S+ +H   ++    + D
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN-NVAD 458

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  A++D Y++   +  A  +F G    D+++WN +++GY Q+    + +E+F +M +
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHK 517

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             E   +  T  ++L     + A+ QG ++HA  IK+    D++V++ ++DMY KCG + 
Sbjct: 518 QGE-RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 576

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A   F  +P    V W  +IS    +G+ ++AL+ F QM   GV PD  T  +L  A S
Sbjct: 577 AAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASS 636

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
               + +G R  H    +            +VD++ + G +  A+   + + +  + + W
Sbjct: 637 CLTALEQG-RQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAW 694

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDS-----ENVGYYVLMSNIYANVGKWEGVDEVRS 560
            A+L     HG    G  A     +++S     + V +  ++S    +    E    +RS
Sbjct: 695 NAMLVGLAQHGE---GKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRS 751

Query: 561 LARDRGLK 568
           + RD G+K
Sbjct: 752 MHRDYGIK 759



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 147/551 (26%), Positives = 242/551 (43%), Gaps = 78/551 (14%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L+ GK  H  +L L    + F+  +L+ MY + G    AR++FD MP RD  SWN++++
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILA 120

Query: 103 GYCQSGNAV-----EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
            Y QS   V     EA  +   +R + V    +T++ +L +C  S  + +    H Y  K
Sbjct: 121 AYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACK 180

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GL+ + FV+  L+N+Y KFG ++    +F++M  RDVV WN ++ AY +      A   
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 218 FTTMQQAGIQPDLLTLVSLTSI---------VAQLNDCRNSRSVHGFIMRR----GWF-- 262
            +    +G+ P+ +TL  L+ I         V    +  ++ +V   I R     G+   
Sbjct: 241 SSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHA 300

Query: 263 ----------------------------------MEDVIIGNAVVDMYAKLG-------- 280
                                             ++ + +G  V  M  KLG        
Sbjct: 301 GQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVS 360

Query: 281 --IINSAC---------AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
             +IN  C          VF  +  +D+ISWN++I G AQ+ L  EA+ +F  +  C  +
Sbjct: 361 NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG-L 419

Query: 330 NPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
            P+  T  S+L A S +   L    +IH   IK     D FV+T L+D Y +   + +A 
Sbjct: 420 KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF +      V WNA++S +     G K L  F  M  +G R D  T  ++L  C    
Sbjct: 480 VLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLF 538

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            +++G++  H    + G    L     ++D++ + G +  A     ++PV PD   W  L
Sbjct: 539 AINQGKQ-VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTL 596

Query: 509 LGACRIHGNME 519
           +  C  +G  E
Sbjct: 597 ISGCIENGEEE 607



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 175/398 (43%), Gaps = 82/398 (20%)

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           + +++ G   H  I+        F+ NNLI+MY+K G + +A RVFD+M ERD+VSWNSI
Sbjct: 59  TSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 202 IAAYEQSNDPIT-----AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +AAY QS++ +      A   F  ++Q  +    +TL  +  +         S S HG+ 
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA 178

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
            + G   +D + G A+V++Y K G +     +FE +P +DV+ WN ++  Y + G   EA
Sbjct: 179 CKIGLDGDDFVAG-ALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 237

Query: 317 IEVFQMMEEC----NEI----------------------NPNQGTYVS-------ILPAY 343
           I++           NEI                      N N  + VS       IL  Y
Sbjct: 238 IDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGY 297

Query: 344 SHVG-----------------------------------ALRQGIKIHARVIKNCLCFDV 368
            H G                                   +L  G ++H   +K  L   +
Sbjct: 298 LHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLML 357

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD---KALNFFRQM 425
            V+  L++MY K  +I  A ++F  +     + WN++I+  GI  Q D   +A+  F Q+
Sbjct: 358 TVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIA--GI-AQSDLEVEAVCLFMQL 414

Query: 426 LDEGVRPDHITFVSLLTACSH--SGLVSEGQRYFHMMQ 461
           L  G++PDH T  S+L A S    GL    Q + H ++
Sbjct: 415 LRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIK 452


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/706 (39%), Positives = 427/706 (60%), Gaps = 7/706 (0%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R  +  EA++ F      SG   D  +   VLK C  L D   GK++HC  +K GF  
Sbjct: 67  FSRNDQNKEALNLFLGLR-RSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVE 125

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV V  SL+ MY +        ++FD+M V++  SW ++++GY Q+G   +AL +  +M+
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           LEG+  +P T A++L   A    +  G+ +H  ++K GL+  +FV N+++NMY+K  M+ 
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD M  R+ VSWNS+IA +  +   + A   F  M+  G++       ++  + A
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL-PVKDVISW 300
            + +   ++ +H  +++ G    D+ I  A++  Y+K   I+ A  +F  +  V++V+SW
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDF-DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSW 364

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGALRQGIKIHARV 359
             +I+GY QNG    A+ +F  M     + PN+ T+ S+L A  +   ++ QG + H+  
Sbjct: 365 TAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCS 424

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK+     + V++ LV MY K G I+ A  +F +      V WN++IS +  HG G K+L
Sbjct: 425 IKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSL 484

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F +M  + +  D ITF+ +++AC+H+GLV+EGQRYF +M +++ I P ++HY CMVDL
Sbjct: 485 KIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 544

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           + RAG L  A + I  MP    A+IW  LL ACR+H N++LG +A+++L  +  ++   Y
Sbjct: 545 YSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAY 604

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA  G W+   +VR L   + +KK  G+S IEV NK   F  G+ +HP+ ++IY
Sbjct: 605 VLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIY 664

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
            +L  L+ ++K  GY PD  +VL DVEE+ KE IL+ HSERLAIAFG+I++PP +PIQI 
Sbjct: 665 LKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIV 724

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCH   K IS+I  R+I+VRDSNRFHHFK G CSCGDYW
Sbjct: 725 KNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 225/437 (51%), Gaps = 5/437 (1%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           +++LFD+ P +     N ++  + ++    EAL++   +R  G   D  +++ +L VC  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             + + G  +H   +K G   ++ V  +L++MY K   +    RVFD+M  ++VVSW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +A Y Q+     A   F+ MQ  GI+P+  T  ++   +A          VH  +++ G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG- 223

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
               + +GN++V+MY+K  +++ A AVF+ +  ++ +SWN++I G+  NGL  EA E+F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M     +   Q  + +++   +++  +    ++H +VIKN   FD+ + T L+  Y KC
Sbjct: 284 RM-RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 382 GRIDDAMSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVS 439
             IDDA  LF  +    + V W AIIS +  +G+ D+A+N F QM  +EGV P+  TF S
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L AC+      E  + FH    + G    L     +V ++ + G++  A+   +   V 
Sbjct: 403 VLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VD 461

Query: 500 PDASIWGALLGACRIHG 516
            D   W +++     HG
Sbjct: 462 RDLVSWNSMISGYAQHG 478



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 14/214 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC----RNLVDGKKIHCSVLK 56
           +IS YV+ GR   A++ F Q     G+ P+ +TF  VL AC     ++  GK+ H   +K
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 426

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            GF   + V+++L+ MY + G    A ++F     RD  SWN+MISGY Q G   ++L I
Sbjct: 427 SGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKI 486

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLI 171
            +EMR + + +D IT   ++  C  +  +  G     L++  Y +   +E      + ++
Sbjct: 487 FEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEH----YSCMV 542

Query: 172 NMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           ++Y++ GM+  A+ + ++M        W +++AA
Sbjct: 543 DLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAA 576


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 279/691 (40%), Positives = 420/691 (60%), Gaps = 21/691 (3%)

Query: 28  RPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           +P+ YTFP VLKAC  L+D    + +HC   + G   D+FV+ +L+ +Y +      A  
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAAT 185

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +F  MP RD  +WNAM++GY   G   + +  L  M+ +  + +  T+ ++LP+ A+   
Sbjct: 186 VFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGA 244

Query: 145 ILSGLLIHLYIVK----HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +  G  +H Y V+    H  +  + V   L++MYAK G + +A RVF+ M  R+ V+W++
Sbjct: 245 LSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSA 304

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN------SRSVHG 254
           ++  +      + A   F  M   G     L  +S TS+ + L  C N       + +H 
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQG-----LCFLSPTSVASALRACANLSDLCLGKQLHA 359

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            + + G    D+  GN+++ MYAK G+I+ A  +F+ + VKD +S++ L++GY QNG A 
Sbjct: 360 LLAKSG-LHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKAD 418

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA  VF+ M+ CN + P+  T VS++PA SH+ AL+ G   H  VI   +  +  +   L
Sbjct: 419 EAFRVFRKMQACN-VQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNAL 477

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KCGRID +  +F  +P    V WN +I+ +GIHG G +A   F  M  +   PD 
Sbjct: 478 IDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDD 537

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TF+ L++ACSHSGLV+EG+R+FHMM  ++GI P ++HY  MVDL  R G L  A+ FIQ
Sbjct: 538 VTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQ 597

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
            MP++ D  +WGALLGACR+H N++LG   S  + ++  E  G +VL+SNI++  G+++ 
Sbjct: 598 GMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDE 657

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
             EVR + +++G KK+PG S IE+N  +  F  G+R+H +  +IY EL N+   +  LGY
Sbjct: 658 AAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGY 717

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
             D SFVLQDVEE+EKE  L  HSE+LAIAFG+++      I + KNLRVCGDCH   K+
Sbjct: 718 RADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKY 777

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ + +R IIVRD+NRFHHFK+G CSCGD+W
Sbjct: 778 MTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 220/446 (49%), Gaps = 12/446 (2%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  ++AR LFD +P      +NA+I  Y   G A+         R      +  T   +L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C+   ++ S   +H +  + GL  +LFVS  L+++YAK    RHA  VF +M  RDVV
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 197 SWNSIIAAYE---QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +WN+++A Y    + +D I        + Q    P+  TLV+L  ++AQ       R+VH
Sbjct: 197 AWNAMLAGYALHGKYSDTIAC----LLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 254 GFIMRRGWF---MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            + +R        + V++G A++DMYAK G +  A  VFE + V++ ++W+ L+ G+   
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLC 312

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EA  +F+ M        +  +  S L A +++  L  G ++HA + K+ L  D+  
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+ MY K G ID A +LF Q+    +V ++A++S +  +G+ D+A   FR+M    V
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +PD  T VSL+ ACSH   +  G +  H      GI         ++D++ + G + ++ 
Sbjct: 433 QPDVATMVSLIPACSHLAALQHG-KCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSR 491

Query: 491 NFIQNMPVRPDASIWGALLGACRIHG 516
                MP R D   W  ++    IHG
Sbjct: 492 QIFDVMPAR-DIVSWNTMIAGYGIHG 516



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 157/314 (50%), Gaps = 16/314 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSG---LRPDFYTFPPVLKACRNLVD---GKKIHCSV 54
           ++  +V CGR+ EA   F    L  G   L P   +    L+AC NL D   GK++H  +
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDM-LAQGLCFLSPT--SVASALRACANLSDLCLGKQLHALL 361

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            K G   D+    SLL MY + GL + A  LFD M V+D+ S++A++SGY Q+G A EA 
Sbjct: 362 AKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAF 421

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +  +M+   V  D  T+ S++P C+    +  G   H  ++  G+     + N LI+MY
Sbjct: 422 RVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMY 481

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           AK G +  + ++FD M  RD+VSWN++IA Y        A   F  M+    +PD +T +
Sbjct: 482 AKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFI 541

Query: 235 SLTSIVAQLN-DCRNSRSVHGFIMRRGWF--MEDVIIGNAVVDMYAKLGIINSACAVFEG 291
            L S  +         R  H    + G    ME  I    +VD+ A+ G ++ A    +G
Sbjct: 542 CLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYI---GMVDLLARGGFLDEAYQFIQG 598

Query: 292 LPVK-DVISWNTLI 304
           +P+K DV  W  L+
Sbjct: 599 MPLKADVRVWGALL 612



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 6/242 (2%)

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G ++ A  +F+ +P   +  +N LI  Y+  G A        +        PN  T+  +
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLP-QPNNYTFPFV 135

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S +  LR    +H    +  L  D+FV+T LVD+Y KC     A ++F ++P    
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V WNA+++ + +HG+    +     M D+   P+  T V+LL   +  G +S+G+     
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 460 MQEEFGIKPHLKHY---GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                 +  H         ++D++ + GHL  A    + M VR + + W AL+G   + G
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALVGGFVLCG 313

Query: 517 NM 518
            M
Sbjct: 314 RM 315



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG +  A  LF Q+P      +NA+I  + + G       +         +P++ TF  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L ACS + L     R  H      G+   L     +VD++ +      A    + MP R 
Sbjct: 136 LKACS-ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR- 193

Query: 501 DASIWGALLGACRIHGN 517
           D   W A+L    +HG 
Sbjct: 194 DVVAWNAMLAGYALHGK 210


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 433/711 (60%), Gaps = 9/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y   G   +++   Y   L  G+ P  +TFP +LKAC +L     G+ IH     L
Sbjct: 78  MIRTYAWSGPFQQSI-YLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHIL 136

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALD 115
           G   D++V+ +LLHMY + G    A+ LF+ +    RD  +WNAMI+ +       + + 
Sbjct: 137 GLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIH 196

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            + +M+  GV+ +  T+ SILP   +++ +  G  IH Y +++    N+ +   L++MYA
Sbjct: 197 SVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYA 256

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLV 234
           K  ++ +A ++F+ + +++ V W+++I  Y   +    A   +  M    G+ P   TL 
Sbjct: 257 KCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLA 316

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++    AQL D +  + +H  +++ G  + D  +GN+++ MYAK GI+++A    + +  
Sbjct: 317 TMLRACAQLTDLKRGKKLHCHMIKSGMDL-DTTVGNSLISMYAKCGIMDNAVGFLDEMIA 375

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD +S++ +I+G  QNG A +A+ +F+ M+  + I P   T +++LPA SH+ AL+ G  
Sbjct: 376 KDTVSYSAIISGCVQNGYAEKALLIFRQMQS-SGIAPYLETMIALLPACSHLAALQHGTC 434

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            H   +      D  +   ++DMY KCG+I  +  +F ++     + WN +I  +GIHG 
Sbjct: 435 CHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGL 494

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +AL+ F+++   G++PD +T +++L+ACSHSGLV+EG+ +F  M + F IKP + HY 
Sbjct: 495 CVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYI 554

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL  RAG+L  A+ FIQ MP  P+  IWGALL ACR H N+E+G   S ++  +  E
Sbjct: 555 CMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPE 614

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
             G +VLMSNIY++VG+W+    +RS+ R  G KK+PG S +E++  + +F  G+++HP+
Sbjct: 615 GTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQ 674

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I  +L+ L  +MK LGY  D SFVL DVEE+EKE IL  HSE++AIAFGI+++ P S
Sbjct: 675 SASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSS 734

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I + KNLR+C DCH+  KFI+ +TEREI VRD++RFHHFKDGIC+C D+W
Sbjct: 735 RILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/440 (30%), Positives = 224/440 (50%), Gaps = 7/440 (1%)

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
            +AR +FD +P      WN MI  Y  SG   +++ +   M   GV+    T   +L  C
Sbjct: 58  QLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKAC 117

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVS 197
           +    +  G LIH +    GL  +L+VS  L++MYAK G +  A  +F+ +   +RD+V+
Sbjct: 118 SSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVA 177

Query: 198 WNSIIAAYE-QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           WN++IAA+   +    T H     MQQAG+ P+  TLVS+   + Q N     +++H + 
Sbjct: 178 WNAMIAAFSFHALHAQTIHS-VAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           + R +F ++V++  A++DMYAK  ++  A  +F  +  K+ + W+ +I GY  +   S+A
Sbjct: 237 I-RNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           + ++  M     +NP   T  ++L A + +  L++G K+H  +IK+ +  D  V   L+ 
Sbjct: 296 LALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLIS 355

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY KCG +D+A+    ++    +V ++AIIS    +G  +KAL  FRQM   G+ P   T
Sbjct: 356 MYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLET 415

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
            ++LL ACSH   +  G    H      G          ++D++ + G + ++      M
Sbjct: 416 MIALLPACSHLAALQHGT-CCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRM 474

Query: 497 PVRPDASIWGALLGACRIHG 516
             R D   W  ++    IHG
Sbjct: 475 QNR-DIISWNTMIIGYGIHG 493



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 5/240 (2%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  A  VF+ +P   V+ WN +I  YA +G   ++I ++  M +   + P   T+  +L 
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPFLLK 115

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-- 399
           A S + AL+ G  IH       L  D++V+T L+ MY KCG +  A +LF  +       
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V WNA+I+    H    + ++   QM   GV P+  T VS+L     +  + +G+     
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAY 235

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
               F    ++     ++D++ +   L  A      +  + D   W A++G   +H ++ 
Sbjct: 236 YIRNFFFD-NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVC-WSAMIGGYVLHDSIS 293



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           AT L   +     I  A  +F Q+P+ S V WN +I  +   G   +++  +  ML  GV
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            P + TF  LL ACS    +  G R  H      G+   L     ++ ++ + GHL  A 
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQ 162

Query: 491 NFIQNMPVRP-DASIWGALLGACRIHG 516
               ++  +  D   W A++ A   H 
Sbjct: 163 TLFNSISHQDRDIVAWNAMIAAFSFHA 189


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/708 (39%), Positives = 426/708 (60%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+  R S AV  F +  +  G++P+ + F  V+ AC   R+L  G+K+H  V++ 
Sbjct: 173 LMSAYVKNDRCSHAVKVFGEM-VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRT 231

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ DVF A +L+ MY + G   +A  +F  +P  D  SWNA ISG    G+   AL++L
Sbjct: 232 GYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELL 291

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T++SIL  CA S     G  IH ++VK   + + +++  L++MYAK 
Sbjct: 292 LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKH 351

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A +VFD + +RD+V WN++I+          A   F  M++ G   +  TL ++ 
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L    ++R VH    + G F+ D  + N ++D Y K   +N A  VFE     D+
Sbjct: 412 KSTASLEAISDTRQVHALAEKLG-FLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDI 470

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I++ ++IT  +Q     +AI++F  M     ++P+     S+L A + + A  QG ++HA
Sbjct: 471 IAFTSMITALSQCDHGEDAIKLFMEMLR-KGLDPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     DVF    LV  Y KCG I+DA   F  +P    V W+A+I     HG G +
Sbjct: 530 HLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKR 589

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F +M+DE + P+HIT  S+L AC+H+GLV E +RYF+ M+E FGI+   +HY CM+
Sbjct: 590 ALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMI 649

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   + +MP + +A++WGALL A R+H + ELG +A+++LF ++ E  G
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSG 709

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++N YA+ G W+ V +VR L +D  +KK P  S +E+ +KV  F  G+++HP+   
Sbjct: 710 THVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARD 769

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   M   GYVP+    L DV+++EKE +L+ HSERLA+AF +IS+P  +PI+
Sbjct: 770 IYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIR 829

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS I  REII+RD NRFHHF+DG CSC DYW
Sbjct: 830 VKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/562 (26%), Positives = 272/562 (48%), Gaps = 12/562 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y       +A+  F      S +R + +  P VLK   +   G ++H   +  G  
Sbjct: 74  LVTAYSNNAMPRDALGAFRSMRSCS-VRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLG 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILDE 119
            D+FVA +L+ MY  FG  + AR +FD+    R++ SWN ++S Y ++     A+ +  E
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   GV  +    + ++  C  S ++ +G  +H  +++ G + ++F +N L++MY+K G 
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGD 252

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +R A  VF ++ E DVVSWN+ I+          A      M+ +G+ P++ TL S+   
Sbjct: 253 IRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A        R +HGF+++      D  I   +VDMYAK G+++ A  VF+ +P +D++ 
Sbjct: 313 CAGSGAFNLGRQIHGFMVKAN-ADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN LI+G +     +EA+ +F  M +    + N+ T  ++L + + + A+    ++HA  
Sbjct: 372 WNALISGCSHGAQHAEALSLFCRMRK-EGFDVNRTTLAAVLKSTASLEAISDTRQVHALA 430

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            K     D  V   L+D Y KC  ++ A  +F +      + + ++I+       G+ A+
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAI 490

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVD 478
             F +ML +G+ PD     SLL AC+      +G Q + H+++ +F     +     +V 
Sbjct: 491 KLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF--MSDVFAGNALVY 548

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG- 537
            + + G +  A      +P +   S W A++G    HG+   G  A D    +  E++  
Sbjct: 549 TYAKCGSIEDADLAFSGLPEKGVVS-WSAMIGGLAQHGH---GKRALDVFHRMVDEHISP 604

Query: 538 YYVLMSNIYANVGKWEGVDEVR 559
            ++ M+++         VDE +
Sbjct: 605 NHITMTSVLCACNHAGLVDEAK 626



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 220/437 (50%), Gaps = 12/437 (2%)

Query: 33  TFPPVLK---ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T  P+L    A ++L+ G  IH  +LK G  + VF    LL  Y +  L   AR++FD++
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGL-FAVF-RNHLLSFYSKCRLPGSARRVFDEI 63

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P     SW+++++ Y  +    +AL     MR   V  +   +  +L  CA       G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAGF--GT 120

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQS 208
            +H   +  GL  ++FV+N L+ MY  FG +  A  VFD+   ER+ VSWN +++AY ++
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           +    A   F  M   G+QP+      + +      D    R VH  ++R G + +DV  
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTG-YDKDVFT 239

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            NA+VDMY+KLG I  A  VF  +P  DV+SWN  I+G   +G    A+E+   M+    
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + PN  T  SIL A +  GA   G +IH  ++K     D ++A  LVDMY K G +DDA 
Sbjct: 300 V-PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAK 358

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  +P+   V WNA+IS      Q  +AL+ F +M  EG   +  T  ++L + +   
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 449 LVSEGQRYFHMMQEEFG 465
            +S+  R  H + E+ G
Sbjct: 419 AISD-TRQVHALAEKLG 434



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 197/395 (49%), Gaps = 11/395 (2%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T+  +L   A + ++L G  IH +++K GL F +F  N+L++ Y+K  +   A RVFD++
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGL-FAVF-RNHLLSFYSKCRLPGSARRVFDEI 63

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +   VSW+S++ AY  +  P  A G F +M+   ++ +      L  ++    D     
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFV---LPVVLKCAPDAGFGT 120

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISWNTLITGYAQ 309
            +H   M  G    D+ + NA+V MY   G ++ A  VF E    ++ +SWN L++ Y +
Sbjct: 121 QLHALAMATG-LGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVK 179

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N   S A++VF  M     + PN+  +  ++ A +    L  G K+HA VI+     DVF
Sbjct: 180 NDRCSHAVKVFGEM-VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            A  LVDMY K G I  A  +F +VP +  V WNA IS   +HG    AL    QM   G
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P+  T  S+L AC+ SG  + G++    M +      +   +G +VD++ + G L  A
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDA 357

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
                 +P R D  +W AL+  C  HG     A++
Sbjct: 358 KKVFDWIPQR-DLVLWNALISGCS-HGAQHAEALS 390



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 10/289 (3%)

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
           L T+  L +  A          +H  +++ G F    +  N ++  Y+K  +  SA  VF
Sbjct: 4   LETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF---AVFRNHLLSFYSKCRLPGSARRVF 60

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           + +P    +SW++L+T Y+ N +  +A+  F+ M  C+ +  N+     +L      G  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCS-VRCNEFVLPVVLKCAPDAGF- 118

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISC 408
             G ++HA  +   L  D+FVA  LV MYG  G +D+A  +F +     ++V WN ++S 
Sbjct: 119 --GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +  + +   A+  F +M+  GV+P+   F  ++ AC+ S  +  G R  H M    G   
Sbjct: 177 YVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAG-RKVHAMVIRTGYDK 235

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +     +VD++ + G + MA      +P   D   W A +  C +HG+
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGH 283


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/710 (40%), Positives = 419/710 (59%), Gaps = 8/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ Y++    ++A    Y +   +    D +  P VLKAC    + + G+++H  V+K 
Sbjct: 95  LITSYIKNNCPADAAK-IYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKN 153

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DVFV  +L+ MY   G   +AR LFD +  +D  SW+ MI  Y +SG   EALD+L
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYA 175
            +M +  V    I + SI  V A   ++  G  +H Y++++G   +  + +   LI+MY 
Sbjct: 214 RDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYV 273

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K   + +A RVFD + +  ++SW ++IAAY   N+       F  M   G+ P+ +T++S
Sbjct: 274 KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLS 333

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L             + +H F +R G F   +++  A +DMY K G + SA +VF+    K
Sbjct: 334 LVKECGTAGALELGKLLHAFTLRNG-FTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK 392

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D++ W+ +I+ YAQN    EA ++F  M  C  I PN+ T VS+L   +  G+L  G  I
Sbjct: 393 DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG-IRPNERTMVSLLMICAKAGSLEMGKWI 451

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H+ + K  +  D+ + T  VDMY  CG ID A  LF +        WNA+IS   +HG G
Sbjct: 452 HSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHG 511

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           + AL  F +M   GV P+ ITF+  L ACSHSGL+ EG+R FH M  EFG  P ++HYGC
Sbjct: 512 EAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGC 571

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL GRAG L  AH  I++MP+RP+ +++G+ L AC++H N++LG  A+ +   ++   
Sbjct: 572 MVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHK 631

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            GY VLMSNIYA+  +W  V  +R   +D G+ K PG SSIEVN  +  F  G+R HP  
Sbjct: 632 SGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDA 691

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +K+Y+ +  +  K++  GY PD S VL ++++++K   L  HSE+LA+A+G+IS+ P  P
Sbjct: 692 KKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVP 751

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLRVC DCHN TK +S+I  REIIVRD NRFHHFK+G CSC DYW
Sbjct: 752 IRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 439/709 (61%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS +V  G+  EA+  F +     G+  + YTF   L+   +   +  G  IH + LK 
Sbjct: 219 IISAHVTEGKCLEALSLFRRMQ-EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKS 277

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DV+VA +L+ MY + G    A ++F  M  RD  SWN ++SG  Q+    +AL+  
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYF 337

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+      D ++V +++    RS N+L+G  +H Y +++GL+ N+ + N LI+MYAK 
Sbjct: 338 RDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKC 397

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             ++H    F+ M E+D++SW +IIA Y Q+   + A   F  +Q  G+  D + + S+ 
Sbjct: 398 CCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVL 457

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L      R +HG++ +R   + D+++ NA+V++Y ++G  + A   FE +  KD+
Sbjct: 458 RACSGLKSRNFIREIHGYVFKRD--LADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDI 515

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++IT    NGL  EA+E+F  +++ N I P+    +S L A +++ +L++G +IH 
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTN-IQPDSIAIISALSATANLSSLKKGKEIHG 574

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  +A+ LVDMY  CG ++++  +F+ V +   + W ++I+ +G+HG G++
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNE 634

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F++M DE V PDHITF++LL ACSHSGL+ EG+R+F +M+  + ++P  +HY CMV
Sbjct: 635 AIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMV 694

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  L  A+ F+++MP++P + +W ALLGAC IH N ELG +A+  L + D++N G
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSG 754

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y L+SNI+A  G+W  V+EVR   +  GLKK PG S IEV+NK+  F   +++HP+ + 
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDD 814

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L   T  + K  GY+    FV  +V E+EK  +L  HSERLA+ +G++ +P  + I
Sbjct: 815 IYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSI 874

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLR+C DCH + K  S++++R ++VRD+NRFHHF+ G+CSCGD+W
Sbjct: 875 RITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 271/523 (51%), Gaps = 15/523 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  +V  G+  EA++ + +  +  G+  D  TFP VLKAC  L +   G +IH   +K 
Sbjct: 116 MMGAFVSSGKYLEAIELYKEMRVL-GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKC 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD--MPVRDSGSWNAMISGYCQSGNAVEALD 115
           GF   VFV  +L+ MY + G    AR LFD   M   D+ SWN++IS +   G  +EAL 
Sbjct: 175 GFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALS 234

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   M+  GV+ +  T  + L        +  G+ IH   +K     +++V+N LI MYA
Sbjct: 235 LFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYA 294

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G M  A RVF  M+ RD VSWN++++   Q+     A  +F  MQ +  +PD +++++
Sbjct: 295 KCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLN 354

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L +   +  +  N + VH + +R G    ++ IGN ++DMYAK   +      FE +  K
Sbjct: 355 LIAASGRSGNLLNGKEVHAYAIRNG-LDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEK 413

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D+ISW T+I GYAQN    EAI +F+ ++ +  +++P      S+L A S + +     +
Sbjct: 414 DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMM--IGSVLRACSGLKSRNFIRE 471

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  V K  L  D+ +   +V++YG+ G  D A   F  +     V W ++I+C   +G 
Sbjct: 472 IHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGL 530

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHY 473
             +AL  F  +    ++PD I  +S L+A ++   + +G+  +  ++++ F ++  +   
Sbjct: 531 PVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA-- 588

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             +VD++   G +  +     ++  R D  +W +++ A  +HG
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHG 630



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 246/489 (50%), Gaps = 16/489 (3%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A + L  G+++H  +LK       F+A  LLHMY + G    A K+FD+M  R   +WNA
Sbjct: 58  AVKALPQGQQLHARLLK--SHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNA 115

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           M+  +  SG  +EA+++  EMR+ GV++D  T  S+L  C        G  IH   VK G
Sbjct: 116 MMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQ-MMER-DVVSWNSIIAAYEQSNDPITAHGF 217
               +FV N LI MY K G +  A  +FD  MME+ D VSWNSII+A+      + A   
Sbjct: 176 FGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSL 235

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  MQ+ G+  +  T V+    V   +  +    +HG  ++   F  DV + NA++ MYA
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHF-ADVYVANALIAMYA 294

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G +  A  VF  +  +D +SWNTL++G  QN L  +A+  F+ M+   +  P+Q + +
Sbjct: 295 KCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ-KPDQVSVL 353

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           +++ A    G L  G ++HA  I+N L  ++ +   L+DMY KC  +      F  +   
Sbjct: 354 NLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEK 413

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + W  II+ +  +    +A+N FR++  +G+  D +   S+L AC  SGL S   R F
Sbjct: 414 DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGLKS---RNF 468

Query: 458 HMMQEEFGIKPHLKH---YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
                 +  K  L        +V+++G  GH   A    +++  + D   W +++  C +
Sbjct: 469 IREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSK-DIVSWTSMITCC-V 526

Query: 515 HGNMELGAV 523
           H  + + A+
Sbjct: 527 HNGLPVEAL 535


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/696 (38%), Positives = 419/696 (60%), Gaps = 9/696 (1%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLL 70
           ++  F     ++ L+P+  T+   + A     D   G+ IH   +  G + ++ + ++++
Sbjct: 102 SLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIV 161

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS-MDP 129
            MY +F     ARK+FD MP +D+  WN MISGY ++   VE++ +  ++  E  + +D 
Sbjct: 162 KMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDT 221

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
            T+  ILP  A    +  G+ IH    K G   + +V    I++Y+K G ++    +F +
Sbjct: 222 TTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE 281

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
             + D+V++N++I  Y  + +   +   F  +  +G +    TLVSL  +   L      
Sbjct: 282 FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY-- 339

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
            ++HG+ ++   F+    +  A+  +Y+KL  I SA  +F+  P K + SWN +I+GY Q
Sbjct: 340 -AIHGYCLKSN-FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL  +AI +F+ M++ +E +PN  T   IL A + +GAL  G  +H  V        ++
Sbjct: 398 NGLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V+T L+ MY KCG I +A  LF  + + + V WN +IS +G+HGQG +ALN F +ML+ G
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 516

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P  +TF+ +L ACSH+GLV EG   F+ M   +G +P +KHY CMVD+ GRAGHL  A
Sbjct: 517 ITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRA 576

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             FI+ M + P +S+W  LLGACRIH +  L    S++LFE+D +NVGY+VL+SNI++  
Sbjct: 577 LQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSAD 636

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
             +     VR  A+ R L K PG++ IE+     +F +G+++HP+ ++IY++L  L  KM
Sbjct: 637 RNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKM 696

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GY P+    L DVEE+E+E ++  HSERLAIAFG+I++ P + I+I KNLRVC DCH
Sbjct: 697 REAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCH 756

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             TK IS+ITER I+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 757 TVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 4/271 (1%)

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
            H  I+  G F  D+ +   +    + LG I  A  +F  +   DV  +N L+ G++ N 
Sbjct: 39  THAQIILHG-FRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               ++ VF  + +  ++ PN  TY   + A S     R G  IH + + +    ++ + 
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           + +V MY K  R++DA  +F ++P   ++ WN +IS +  +    +++  FR +++E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           R D  T + +L A +    +  G +  H +  + G   H       + L+ + G + M  
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELG 521
              +    +PD   + A++     +G  EL 
Sbjct: 277 ALFREFR-KPDIVAYNAMIHGYTSNGETELS 306


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 423/708 (59%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+  +  +A+  F +  + SG++P  + F  V+ AC   RN+  G+++H  V+++
Sbjct: 80  LMSAYVKNDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 138

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E DVF A +L+ MY + G  ++A  +F+ MP  D  SWNA+ISG   +G+   A+++L
Sbjct: 139 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +   ++SIL  CA +     G  IH +++K   + + ++   L++MYAK 
Sbjct: 199 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A++VFD M  RD++ WN++I+          A   F  +++ G+  +  TL ++ 
Sbjct: 259 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 318

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L     +R VH    + G F+ D  + N ++D Y K   ++ A  VFE     D+
Sbjct: 319 KSTASLEAASATRQVHALAEKIG-FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 377

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+  ++IT  +Q      AI++F  M     + P+     S+L A + + A  QG ++HA
Sbjct: 378 IAVTSMITALSQCDHGEGAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQVHA 436

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D F    LV  Y KCG I+DA   F  +P    V W+A+I     HG G +
Sbjct: 437 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 496

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M+DEG+ P+HIT  S+L AC+H+GLV E +RYF+ M+E FGI    +HY CM+
Sbjct: 497 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMI 556

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   + +MP + +AS+WGALLGA R+H + ELG +A+++LF ++ E  G
Sbjct: 557 DLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSG 616

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++N YA+ G W  V +VR L +D  +KK P  S +EV +KV  F  G+++HP  ++
Sbjct: 617 THVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKE 676

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   M   GY+P+    L D++  EKE +L+ HSERLA+AF ++S+PP +PI+
Sbjct: 677 IYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIR 736

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS I  REII+RD NRFHHF+DG CSCGDYW
Sbjct: 737 VKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/488 (28%), Positives = 244/488 (50%), Gaps = 7/488 (1%)

Query: 32  YTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-P 90
           +  P VLK   +   G ++H   +  GF  DVFVA +L+ MY  FG  + AR++FD+   
Sbjct: 11  FALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGS 70

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R++ SWN ++S Y ++    +A+ +  EM   G+       + ++  C  S NI +G  
Sbjct: 71  ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 130

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H  +V+ G E ++F +N L++MY K G +  A  +F++M + DVVSWN++I+    +  
Sbjct: 131 VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 190

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A      M+ +G+ P++  L S+    A        R +HGF+++     +D  IG 
Sbjct: 191 DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD-YIGV 249

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            +VDMYAK   ++ A  VF+ +  +D+I WN LI+G +  G   EA  +F  + +   + 
Sbjct: 250 GLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK-EGLG 308

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            N+ T  ++L + + + A     ++HA   K    FD  V   L+D Y KC  + DA+ +
Sbjct: 309 VNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRV 368

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F +      +   ++I+       G+ A+  F +ML +G+ PD     SLL AC+     
Sbjct: 369 FEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 428

Query: 451 SEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            +G Q + H+++ +F       +   +V  + + G +  A     ++P R   S W A++
Sbjct: 429 EQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPERGVVS-WSAMI 485

Query: 510 GACRIHGN 517
           G    HG+
Sbjct: 486 GGLAQHGH 493


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/734 (38%), Positives = 428/734 (58%), Gaps = 32/734 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD------GKKIHCSV 54
           +IS   R      A+  F +  L  G  P  +T   +  AC NL        GK+IH   
Sbjct: 84  IISALCRFEEWEVAIKAF-RLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCC 142

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            + G  W  F   +L+ MY + G  + A+ L      RD  +WN+MIS + Q+   +EAL
Sbjct: 143 FRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEAL 201

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINM 173
             L  M LEGV  D +T AS+LP C+  D + +G  IH Y ++   +  N FV + L++M
Sbjct: 202 MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDM 261

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLT 232
           Y   G +     VFD +++R +  WN++IA Y QS     A   F  M+ A G+  +  T
Sbjct: 262 YCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATT 321

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           + S+     +         +HG++++RG    +  + NA++DMY+++G I ++  +F+ +
Sbjct: 322 MSSIVPAYVRCEGISRKEGIHGYVIKRG-LETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE---------------INPNQGTYV 337
             +D++SWNT+IT Y   G +S+A+ +   M+   E                 PN  T +
Sbjct: 381 EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLM 440

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++LP  + + AL +G +IHA  I+N L   V V + LVDMY KCG ++ A  +F Q+P  
Sbjct: 441 TVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR 500

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-----VRPDHITFVSLLTACSHSGLVSE 452
           + + WN II  +G+HG+G ++L  F  M+ EG     V+P  +TF++L  +CSHSG+V E
Sbjct: 501 NVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDE 560

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGA 511
           G   FH M+ E GI+P   HY C+VDL GRAG +  A+  +  MP   D    W +LLGA
Sbjct: 561 GLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGA 620

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CRI+ N+E+G +A++ L ++  +   +YVL+SNIY++ G W+    +R   +  G+KK P
Sbjct: 621 CRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEP 680

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S IE  ++V  F  G+ +HP+ EK++D L  L+ ++K  GYVPD + VL D++E+EKE
Sbjct: 681 GCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKE 740

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
            IL  HSE+LAIAFGI+++PP + I++ KNLRVC DCH  +KFIS+I +REII+RD+ RF
Sbjct: 741 TILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRF 800

Query: 692 HHFKDGICSCGDYW 705
           HHFKDG CSCGDYW
Sbjct: 801 HHFKDGTCSCGDYW 814



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/519 (28%), Positives = 249/519 (47%), Gaps = 27/519 (5%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEW--DVFVAASLLHMYCRFG 77
           + SG  PD + FP VLKA    + L  GK+IH  V K G+     V +  +L++MY + G
Sbjct: 2   IGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCG 61

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               A K+FD +  RD  SWN++IS  C+      A+     M +EG      T+ S+  
Sbjct: 62  GLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMAL 121

Query: 138 VCA---RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
            C+   + D +  G  IH    + G  +  F +N L+ MYAK G +  A  +     +RD
Sbjct: 122 ACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +V+WNS+I+++ Q+   + A  F   M   G++PD +T  S+    + L+  R  + +H 
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           + +R    +E+  +G+A+VDMY   G + S   VF+ +  + +  WN +I GYAQ+    
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +A+ +F  ME    +  N  T  SI+PAY     + +   IH  VIK  L  + ++   L
Sbjct: 301 KALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNAL 360

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML-------- 426
           +DMY + G I  +  +F  +     V WN II+ + I G+   AL    +M         
Sbjct: 361 IDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTY 420

Query: 427 -----DEG---VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
                DE     +P+ IT +++L  C+    +++G+   H       +   +     +VD
Sbjct: 421 DGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKE-IHAYAIRNLLASQVTVGSALVD 479

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           ++ + G L +A      MP+R +   W  ++ A  +HG 
Sbjct: 480 MYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGK 517


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 294/715 (41%), Positives = 425/715 (59%), Gaps = 15/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G    A+D  Y+  L   + P+ YTFP VLKAC  LVD   G+ IH      
Sbjct: 71  LIRAYSWLGPFHAAID-LYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAA 129

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DI 116
           G   D+FV+ +L+ +Y R      AR +F  MP+RD  +WNAM++GY   G    A+  +
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN---LFVSNNLINM 173
           LD     G+  +  T+ S+LP+ A+   +  G  IH Y ++  LE N   + +   L++M
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDM 249

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK   + +A RVF  M  R+ V+W+++I  +   +    A   F  M   G+    L+ 
Sbjct: 250 YAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC--FLSA 307

Query: 234 VSLTS---IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            S+ S   + A L D      +H  I + G    D+   N+++ MYAK G+IN A   F+
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            + VKD IS+  L++G  QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLAALQ 425

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G   H  VI   L  +  +   L+DMY KCG+ID +  +F ++P    V WN +I+ +G
Sbjct: 426 HGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYG 485

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           IHG G +A   F  M ++G  PD +TF+ L+ ACSHSGLV+EG+ +F  M  ++GI P +
Sbjct: 486 IHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRM 545

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HY CMVDL  R G L  A+ FIQ+MP++ D  +WGALLGACRIH N++LG   S  + +
Sbjct: 546 EHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK 605

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E  G +VL+SNI++  G+++   EVR + + +G KK+PG+S IE+N  +  F  G++
Sbjct: 606 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQ 665

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +HP    IY EL N+   +K LGY  D SFVLQD+EE+EKE  L  HSE+LAIAFG++S 
Sbjct: 666 SHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSL 725

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
                I + KNLRVCGDCH   K+++ +  R IIVRD+NRFHHFK+G CSCG++W
Sbjct: 726 NEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 225/453 (49%), Gaps = 11/453 (2%)

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           L  +   G   +AR++FD +P  D+ ++NA+I  Y   G    A+D+   M    V+ + 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY---AKFGMMRHALRV 186
            T   +L  C+   ++ +G  IH +    GL  +LFVS  LI++Y   A+FG  R+   V
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN---V 157

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLND 245
           F +M  RDVV+WN+++A Y        A      MQ   G++P+  TLVSL  ++AQ   
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 246 CRNSRSVHGFIMRRGWFM--EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                S+H + +R       E V+IG A++DMYAK   +  AC VF G+PV++ ++W+ L
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G+      +EA  +F+ M        +  +  S L   + +  L  G ++HA + K+ 
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +  D+  +  L+ MY K G I++A   F ++    ++ + A++S    +G+ ++A   F+
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M    + PD  T VSL+ ACSH   +  G +  H      G+         ++D++ + 
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G + ++      MP R D   W  ++    IHG
Sbjct: 457 GKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHG 488


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/706 (40%), Positives = 418/706 (59%), Gaps = 9/706 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           ++  Y + G   EA+ C Y   L +G+RPD YTFP VL++C    +LV G+++H  V++ 
Sbjct: 106 LVGGYTKAGFFDEAL-CLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRF 164

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ DV V  +L+ MY + G    AR LFD MP RD  SWNAMISGY ++   +E L++ 
Sbjct: 165 DFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELF 224

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   +  D +T+ S++  C    +   G  +H Y+V+   + N+ V N+LI MY   
Sbjct: 225 FRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSV 284

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  + A  VF  M  RDVVSW +II+    +  P  A   + TM+  G  PD +T+ S+ 
Sbjct: 285 GHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVL 344

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L        +H    R G  +  V++ N+++DMY+K   I  A  +F  +P KDV
Sbjct: 345 SACASLGQLDMGMKLHELAERTGHILY-VVVANSLIDMYSKCKRIEKALEIFHQIPDKDV 403

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISW ++I G   N    EA+  F+ M    +  PN  T +S L A + VGAL  G +IHA
Sbjct: 404 ISWTSVINGLRINNRCFEALIFFRKM--ILKSKPNSVTLISALSACARVGALMCGKEIHA 461

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K  + FD F+   ++D+Y +CGR+  A++ F  +       WN +++ +   G+G  
Sbjct: 462 HALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAM 520

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            +  F++M++  + PD +TF+SLL ACS SG+V+EG  YF  M+  + I P+LKHY C+V
Sbjct: 521 VMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVV 580

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  AH FI+ MP++PD +IWGALL ACRIH ++ LG +A+  +F+ D+E++G
Sbjct: 581 DLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIG 640

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+ N+YA+ GKW+ V +VR   ++ GL   PG S +EV  KV  F +G+  HP+ ++
Sbjct: 641 YYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQE 700

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L     KMK+ G+   +   +  ++   K  I   HSER AIA+ +I+S P  PI 
Sbjct: 701 INVVLEGFYEKMKTSGFNGQECSSMDGIQTS-KADIFCGHSERQAIAYSLINSAPGMPIW 759

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           + KNL +C  CH+  KFIS+I  REI VRD+ +FHHFKDG+CSCGD
Sbjct: 760 VTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 258/481 (53%), Gaps = 12/481 (2%)

Query: 34  FPPVLKACRN---LVDGKKIHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           F  +++ C N     +G+ +  +VL  L     V +  +LL M+ RFG    A  +F  M
Sbjct: 36  FVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRM 95

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             RD  SWN ++ GY ++G   EAL +   +   G+  D  T  S+L  CA + +++ G 
Sbjct: 96  GERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGR 155

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H ++V+   + ++ V N LI MY K G +  A  +FD+M  RD +SWN++I+ Y +++
Sbjct: 156 EVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEND 215

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           + +     F  M++  I PDL+T+ S+ S    L D R    +H +++R   +  ++ + 
Sbjct: 216 ECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTA-YDGNISVY 274

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N+++ MY  +G    A +VF G+  +DV+SW T+I+G   N L  +A+E ++ ME    +
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTM 334

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  S+L A + +G L  G+K+H    +      V VA  L+DMY KC RI+ A+ 
Sbjct: 335 -PDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALE 393

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F+Q+P    + W ++I+   I+ +  +AL FFR+M+ +  +P+ +T +S L+AC+  G 
Sbjct: 394 IFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGA 452

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +  G+  + H ++   G    L +   ++DL+ R G +  A N  Q      D   W  L
Sbjct: 453 LMCGKEIHAHALKAGMGFDGFLPN--AILDLYVRCGRMRTALN--QFNLNEKDVGAWNIL 508

Query: 509 L 509
           L
Sbjct: 509 L 509



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 208/419 (49%), Gaps = 5/419 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N+ +   C SGN  +AL  L  M+   + ++     +++ +C        G  +   ++ 
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 158 HGLE-FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             +   ++ + N L++M+ +FG + +A  VF +M ERD+ SWN ++  Y ++     A  
Sbjct: 62  SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            +  +  AGI+PD+ T  S+    A   D    R VH  ++R  + M DV + NA++ MY
Sbjct: 122 LYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM-DVDVVNALITMY 180

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G + SA  +F+ +P +D ISWN +I+GY +N    E +E+F  M E + I+P+  T 
Sbjct: 181 VKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELS-IDPDLMTM 239

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S++ A   +G  R G ++H+ V++     ++ V   L+ MY   G   +A S+F  +  
Sbjct: 240 TSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMEC 299

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V W  IIS    +   DKAL  ++ M   G  PD +T  S+L+AC+  G +  G + 
Sbjct: 300 RDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK- 358

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
            H + E  G   ++     ++D++ +   +  A      +P + D   W +++   RI+
Sbjct: 359 LHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK-DVISWTSVINGLRIN 416


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/715 (41%), Positives = 425/715 (59%), Gaps = 15/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G    A+D  Y+  L   + P+ YTFP VLKAC  LVD   G+ IH      
Sbjct: 71  LIRAYSWLGPFHAAID-LYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAA 129

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DI 116
           G   D+FV+ +L+ +Y R      AR +F  MP+RD  +WNAM++GY   G    A+  +
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN---LFVSNNLINM 173
           LD     G+  +  T+ S+LP+ A+   +  G  IH Y ++  LE N   + +   L++M
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDM 249

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK   + +A RVF  M  R+ V+W+++I  +   +    A   F  M   G+    L+ 
Sbjct: 250 YAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC--FLSA 307

Query: 234 VSLTS---IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            S+ S   + A L D      +H  I + G    D+   N+++ MYAK G+IN A   F+
Sbjct: 308 TSVASALRVCASLADLHMGTQLHALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            + VKD IS+  L++G  QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLAALQ 425

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G   H  VI   L  +  +   L+DMY KCG+ID +  +F ++P    V WN +I+ +G
Sbjct: 426 HGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYG 485

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           IHG G +A   F  M ++G  PD +TF+ L+ ACSHSGLV+EG+ +F  M  ++GI P +
Sbjct: 486 IHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRM 545

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HY CMVDL  R G L  A+ FIQ+MP++ D  +WGALLGACRIH N++LG   S  + +
Sbjct: 546 EHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK 605

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E  G +VL+SNI++  G+++   EVR + + +G KK+PG+S IE+N  +  F  G++
Sbjct: 606 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQ 665

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +HP    IY EL N+   +K LGY  D SFVLQD+EE+EKE  L  HSE+LAIAFG++S 
Sbjct: 666 SHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSL 725

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
                I + KNLRVCGDCH   K+++ +  R IIVRD+NRFHHFK+G CSCG++W
Sbjct: 726 NEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 225/453 (49%), Gaps = 11/453 (2%)

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           L  +   G   +AR++FD +P  D+ ++NA+I  Y   G    A+D+   M    V+ + 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY---AKFGMMRHALRV 186
            T   +L  C+   ++ +G  IH +    GL  +LFVS  LI++Y   A+FG  R+   V
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN---V 157

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLND 245
           F +M  RDVV+WN+++A Y        A      MQ   G++P+  TLVSL  ++AQ   
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 246 CRNSRSVHGFIMRRGWFM--EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                S+H + +R       E V+IG A++DMYAK   +  AC VF G+PV++ ++W+ L
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G+      +EA  +F+ M        +  +  S L   + +  L  G ++HA + K+ 
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +  D+  +  L+ MY K G I++A   F ++    ++ + A++S    +G+ ++A   F+
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M    + PD  T VSL+ ACSH   +  G +  H      G+         ++D++ + 
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G + ++      MP R D   W  ++    IHG
Sbjct: 457 GKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHG 488


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 423/708 (59%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+  +  +A+  F +  + SG++P  + F  V+ AC   RN+  G+++H  V+++
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 231

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E DVF A +L+ MY + G  ++A  +F+ MP  D  SWNA+ISG   +G+   A+++L
Sbjct: 232 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +   ++SIL  CA +     G  IH +++K   + + ++   L++MYAK 
Sbjct: 292 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A++VFD M  RD++ WN++I+          A   F  +++ G+  +  TL ++ 
Sbjct: 352 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L     +R VH    + G F+ D  + N ++D Y K   ++ A  VFE     D+
Sbjct: 412 KSTASLEAASATRQVHALAEKIG-FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 470

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+  ++IT  +Q      AI++F  M     + P+     S+L A + + A  QG ++HA
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D F    LV  Y KCG I+DA   F  +P    V W+A+I     HG G +
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M+DEG+ P+HIT  S+L AC+H+GLV E +RYF+ M+E FGI    +HY CM+
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMI 649

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   + +MP + +AS+WGALLGA R+H + ELG +A+++LF ++ E  G
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSG 709

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++N YA+ G W  V +VR L +D  +KK P  S +EV +KV  F  G+++HP  ++
Sbjct: 710 THVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKE 769

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   M   GY+P+    L D++  EKE +L+ HSERLA+AF ++S+PP +PI+
Sbjct: 770 IYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIR 829

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS I  REII+RD NRFHHF+DG CSCGDYW
Sbjct: 830 VKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 256/519 (49%), Gaps = 8/519 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y   G    A+  F+      G+  + +  P VLK   +   G ++H   +  GF 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMR-AEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFG 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEALDILDE 119
            DVFVA +L+ MY  FG  + AR++FD+    R++ SWN ++S Y ++    +A+ +  E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+       + ++  C  S NI +G  +H  +V+ G E ++F +N L++MY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  +F++M + DVVSWN++I+    +     A      M+ +G+ P++  L S+   
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKA 312

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A        R +HGF+++     +D  IG  +VDMYAK   ++ A  VF+ +  +D+I 
Sbjct: 313 CAGAGAFDLGRQIHGFMIKANADSDD-YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 371

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN LI+G +  G   EA  +F  + +   +  N+ T  ++L + + + A     ++HA  
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRK-EGLGVNRTTLAAVLKSTASLEAASATRQVHALA 430

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            K    FD  V   L+D Y KC  + DA+ +F +      +   ++I+       G+ A+
Sbjct: 431 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 490

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVD 478
             F +ML +G+ PD     SLL AC+      +G Q + H+++ +F       +   +V 
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVY 548

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            + + G +  A     ++P R   S W A++G    HG+
Sbjct: 549 TYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH 586



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 217/430 (50%), Gaps = 15/430 (3%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A + L+ G  +H ++LK GF     +   L+  Y +      AR++FD++P     SW++
Sbjct: 16  AAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +++ Y  +G    A+     MR EGV  +   +  +L  C     +  G  +H   +  G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATG 130

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFF 218
              ++FV+N L+ MY  FG M  A RVFD+   ER+ VSWN +++AY +++    A   F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             M  +GIQP   T    + +V      RN    R VH  ++R G + +DV   NA+VDM
Sbjct: 191 GEMVWSGIQP---TEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG-YEKDVFTANALVDM 246

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K+G ++ A  +FE +P  DV+SWN LI+G   NG    AIE+   M+    + PN   
Sbjct: 247 YVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV-PNVFM 305

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             SIL A +  GA   G +IH  +IK     D ++   LVDMY K   +DDAM +F  + 
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 365

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               + WNA+IS     G+ D+A + F  +  EG+  +  T  ++L + + S   +   R
Sbjct: 366 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA-SLEAASATR 424

Query: 456 YFHMMQEEFG 465
             H + E+ G
Sbjct: 425 QVHALAEKIG 434



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 11/387 (2%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T++  L   A +  +L G  +H  ++K G   +L   N+LI+ Y+K      A RVFD++
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEI 63

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +   VSW+S++ AY  +  P +A   F  M+  G+        +L  ++  + D +   
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV---CCNEFALPVVLKCVPDAQLGA 120

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISWNTLITGYAQ 309
            VH   M  G F  DV + NA+V MY   G ++ A  VF E    ++ +SWN L++ Y +
Sbjct: 121 QVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 179

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N    +AI+VF  M   + I P +  +  ++ A +    +  G ++HA V++     DVF
Sbjct: 180 NDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVF 238

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            A  LVDMY K GR+D A  +F ++P S  V WNA+IS   ++G   +A+    QM   G
Sbjct: 239 TANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 298

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P+     S+L AC+ +G    G++    M +           G +VD++ +   L  A
Sbjct: 299 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDA 357

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHG 516
                 M  R D  +W AL+  C  HG
Sbjct: 358 MKVFDWMSHR-DLILWNALISGCS-HG 382



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 20/272 (7%)

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H  +++ G+      + N ++  Y+K      A  VF+ +P    +SW++L+T Y+ NG
Sbjct: 26  LHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 312 LASEAIEVFQMMEE----CNEINPNQGTYVSILP-AYSHVGALRQGIKIHARVIKNCLCF 366
           L   AI+ F  M      CNE           LP     V   + G ++HA  +      
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEF---------ALPVVLKCVPDAQLGAQVHAMAMATGFGS 133

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           DVFVA  LV MYG  G +DDA  +F +     ++V WN ++S +  + Q   A+  F +M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
           +  G++P    F  ++ AC+ S  +  G R  H M    G +  +     +VD++ + G 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + +A    + MP   D   W AL+  C ++G+
Sbjct: 253 VDIASVIFEKMP-DSDVVSWNALISGCVLNGH 283


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 425/709 (59%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI +Y + G    A+  FYQ      + P   T+  +L AC    +L DG +IH  +L+ 
Sbjct: 76  MIGIYCQQGDYDRALGMFYQMQ-EEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQ 134

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFV  +L++MY + G    A   F  +  RD  SW AMI+   Q      A  + 
Sbjct: 135 GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLY 194

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+L+GV  + IT+ ++       + +  G  ++  +    +E ++ V N+ +NM+   
Sbjct: 195 RRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNA 254

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A R+F+ M++RDVV+WN +I  Y Q+ +   A   F  +QQ G++ + +T V + 
Sbjct: 255 GLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLML 314

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           ++   L      + +H  +   G +  D ++  A++ +Y +      A  +F  +  KDV
Sbjct: 315 NVYTSLTSLAKGKVIHELVKEAG-YDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 373

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  +   YAQNG   EA+++FQ M+      P   T V++L   +H+ AL++G +IH+
Sbjct: 374 ITWTVMCVAYAQNGFRKEALQLFQEMQ-LEGRRPTSATLVAVLDTCAHLAALQKGRQIHS 432

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+N    ++ V T L++MYGKCG++ +AMS+F ++ +   + WN+++  +  HG  D+
Sbjct: 433 HIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDE 492

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F QM  +GV+ D ++FVS+L+A SHSG V++G +YF  M ++F I P  + YGC+V
Sbjct: 493 TLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVV 552

Query: 478 DLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           DL GRAG +  A + +  +    PD  +W  LLGACR H   +    A++++ E D  + 
Sbjct: 553 DLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHS 612

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YV++SN+YA  G W+GV+ +R L R RG+KK PG SSIE+ N+V  F  G+R+HP+  
Sbjct: 613 GAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRH 672

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            IY EL  L ++M++ GY+PD   +L DVE++ KE +L  HSERLAIAFG+IS+PP +P+
Sbjct: 673 PIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPL 732

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCH  TK+IS++  REI+VRD++RFH+FKDG CSC DYW
Sbjct: 733 RVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/550 (28%), Positives = 283/550 (51%), Gaps = 11/550 (2%)

Query: 28  RPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           +PD   F  +L+ C   +N+  G+++H  V   GFE +  V   L+ MY + G    A++
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +F+ +  +D  +W  MI  YCQ G+   AL +  +M+ E V    +T  +IL  CA +++
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +  G+ IH  I++ G E ++FV   LINMY K G +R A   F ++  RDVVSW ++IAA
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
             Q +    A   +  MQ  G+ P+ +TL ++ +     N     + V+G +   G    
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLV-SSGVMES 239

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV + N+ V+M+   G++  A  +FE +  +DV++WN +IT Y QN    EA+ +F  ++
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           + + +  N  T+V +L  Y+ + +L +G  IH  V +     D  VAT L+ +YG+C   
Sbjct: 300 Q-DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
             A  +F  +     + W  +   +  +G   +AL  F++M  EG RP   T V++L  C
Sbjct: 359 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 445 SHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           +H   + +G Q + H+++  F ++  ++    +++++G+ G +  A +  + M  R D  
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMAKR-DIL 475

Query: 504 IWGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           +W ++LGA   HG  +  L      +L  V ++ V +  ++S +  +    +G     ++
Sbjct: 476 VWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAM 535

Query: 562 ARDRGLKKTP 571
            +D  +  TP
Sbjct: 536 LQDFSITPTP 545


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/657 (41%), Positives = 398/657 (60%), Gaps = 3/657 (0%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           KIH  ++  G        A L+  Y R G    AR++FD  P     +WNAMI  Y + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              EAL +   M  EGV  D  T   +L  C RS ++ SG       V  G   ++FV  
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            ++N+YAK G M  A+RVFD+M  RD+V W ++I    Q+     A   +  M +  ++ 
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D + ++ L      L   +   S+HG+++R+   M DVI+  ++VDMYAK G +  A  V
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIM-DVIVQTSLVDMYAKNGHLELASCV 263

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F  +  K+VISW+ LI+G+AQNG A  A+++   M+      P+  + VS+L A S VG 
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFG-YKPDSVSLVSVLLACSQVGF 322

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L+ G  +H  +++  L FD   +T ++DMY KCG +  A ++F Q+    S+ WNAII+ 
Sbjct: 323 LKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIAS 381

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +GIHG G++AL+ F QM +  V+PDH TF SLL+A SHSGLV +G+ +F +M  E+ I+P
Sbjct: 382 YGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQP 441

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
             KHY CMVDL  RAG +  A   I++M   P  +IW ALL  C  HG   +G +A+ ++
Sbjct: 442 SEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKV 501

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
            E++ ++ G Y L+SN +A   +W+ V EVR + +  G+KK PG+S +EVN K+  F   
Sbjct: 502 LELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLME 561

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           +++H +YE+I   L  L  +MK++GYVP   FVL ++EE+ KE +L +HSERLAIAFG++
Sbjct: 562 DKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLL 621

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ P + + I KNLRVCGDCH  TKFIS+I  REI+VRD  RFHHFKDG+CSCGDYW
Sbjct: 622 NTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 231/423 (54%), Gaps = 17/423 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y R G + EA+  +++   + G+RPD  T+  VLKAC   +D   G++     +  
Sbjct: 76  MIIAYSRRGAMFEALSLYHRMA-SEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQ 134

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  DVFV A++L++Y + G  + A ++FD M  RD   W  MI+G  Q+G A EA+DI 
Sbjct: 135 GYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIY 194

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  + V  D + +  ++  C    +   GL IH Y+++  +  ++ V  +L++MYAK 
Sbjct: 195 RQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKN 254

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M+ ++V+SW+++I+ + Q+     A      MQ  G +PD ++LVS+ 
Sbjct: 255 GHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVL 314

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +Q+   +  +SVHG+I+RR  F  D +   AV+DMY+K G ++ A  VF+ +  +D 
Sbjct: 315 LACSQVGFLKLGKSVHGYIVRRLHF--DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS 372

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG----- 352
           ISWN +I  Y  +G   EA+ +F  M E N + P+  T+ S+L A+SH G + +G     
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETN-VKPDHATFASLLSAFSHSGLVEKGRYWFS 431

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
           I ++   I+           C+VD+  + GR+++A  L   +     +  W A++S    
Sbjct: 432 IMVNEYKIQPSEKH----YACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLN 487

Query: 412 HGQ 414
           HG+
Sbjct: 488 HGK 490


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/756 (38%), Positives = 435/756 (57%), Gaps = 54/756 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLR--PDFYTFPPVLKACRNLVD---GKKIHCSVL 55
           +I  Y   GR   A  C   F L   L   PD YTFP V KAC  +     G   H    
Sbjct: 98  LIRSYGNNGR---ANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSR 154

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
             GF  +VFV  +L+ MY R G  + ARK+FD+MPV D  SWN++I  Y + G    AL+
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 116 ILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           +  +M  E G   D IT+ ++LP CA       G   H + V   +  N+FV N L++MY
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMY 274

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ----------- 223
           AKFGMM  A  VF  M  +DVVSWN+++A Y Q      A   F  MQ+           
Sbjct: 275 AKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWS 334

Query: 224 ------------------------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI--- 256
                                   +GI+P+ +TL+S+ S  A +    + + +H +    
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394

Query: 257 ---MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITGYAQNG 311
              +R+    ++ ++ N ++DMYAK   ++ A A+F+ L  K  DV++W  +I GY+Q+G
Sbjct: 395 PMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 312 LASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVF 369
            A++A+E+  +M EE  +  PN  T    L A + + AL  G +IHA  ++N      +F
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLF 514

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V+ CL+DMY KCG I DA  +F  +   + V W ++++ +G+HG G++AL  F +M   G
Sbjct: 515 VSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG 574

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
            + D +T + +L ACSHSG++ +G  YF+ M+ +FG+ P  +HY C+VDL GRAG L  A
Sbjct: 575 FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAA 634

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
              I+ MP+ P   +W ALL  CRIHG +ELG  A+ ++ E+ S N G Y L+SN+YAN 
Sbjct: 635 LRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANA 694

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W+ V  +RSL R +G+KK PG S +E       F+ G++THP  ++IY  L +   ++
Sbjct: 695 GRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRI 754

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           K +GYVP+  F L DV+++EK+ +L  HSE+LA+A+GI+++P  + I+I KNLRVCGDCH
Sbjct: 755 KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCH 814

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
               ++S+I + EII+RDS+RFHHFK+G+CSC  YW
Sbjct: 815 TAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 251/534 (47%), Gaps = 53/534 (9%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS 94
           PP +  C+ +   K IH  +L  G    + + + L+  Y   G  + A  L    P  D+
Sbjct: 32  PPFIHKCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDA 90

Query: 95  G--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           G   WN++I  Y  +G A + L     M     + D  T   +   C    ++  G   H
Sbjct: 91  GVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSH 150

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
                 G   N+FV N L+ MY++ G +  A +VFD+M   DVVSWNSII +Y +   P 
Sbjct: 151 ALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210

Query: 213 TAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
            A   F+ M  + G +PD +TLV++    A +      +  HGF +     ++++ +GN 
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSE-MIQNMFVGNC 269

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE------ 325
           +VDMYAK G+++ A  VF  +PVKDV+SWN ++ GY+Q G   +A+ +F+ M+E      
Sbjct: 270 LVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMD 329

Query: 326 -----------------------CNE-----INPNQGTYVSILPAYSHVGALRQGIKIHA 357
                                  C +     I PN+ T +S+L   + VGAL  G +IH 
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHC 389

Query: 358 RVI-------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV-PRSSS-VPWNAIISC 408
             I       KN    +  V   L+DMY KC ++D A ++F  + P+    V W  +I  
Sbjct: 390 YAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGG 449

Query: 409 HGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFG 465
           +  HG  +KAL    +M +E    RP+  T    L AC+    +S G++ + + ++ +  
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQN 509

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             P L    C++D++ + G +G A     NM  + + + W +L+    +HG  E
Sbjct: 510 AVP-LFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVT-WTSLMTGYGMHGYGE 561



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 10/262 (3%)

Query: 272 VVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           ++  Y  LG ++ A ++    P  D  V  WN+LI  Y  NG A++ +  F +M   +  
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS-W 123

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T+  +  A   + ++R G   HA         +VFV   LV MY +CG + DA  
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARK 183

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSG 448
           +F ++P    V WN+II  +   G+   AL  F +M +E G RPD IT V++L  C+  G
Sbjct: 184 VFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
             S G++ FH       +  ++    C+VD++ + G +  A+    NMPV+ D   W A+
Sbjct: 244 TRSLGKQ-FHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAM 301

Query: 509 LGACRIHGNMELGAVASDRLFE 530
           +      G  E       RLFE
Sbjct: 302 VAGYSQIGRFEDAV----RLFE 319


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/658 (40%), Positives = 410/658 (62%), Gaps = 5/658 (0%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +I+  +L  G ++  F+ A L++     G  + ARKLFD  P  D   WNA++  Y + G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
               A+++   M++  VS D  +   +L  C+    +  G  +H  I +HG E ++FV N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L+ +YAK G +  A  VF ++++R +VSW SII+ Y Q+  PI A   F+ M++  ++P
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACA 287
           D + LVS+      + D  + +S+HG +++ G   E D++I  ++  +YAK G +  A  
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLI--SLTSLYAKCGHVMVARL 330

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F  +    +I WN +I+GY +NG A EAIE+F++M+  N I P+  T  S + A + +G
Sbjct: 331 FFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN-IRPDSITVTSSIAACAQIG 389

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           +L     +   +  +    DV V T L+D Y KCG +D A  +F ++P    V W+A++ 
Sbjct: 390 SLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMV 449

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+HGQG +++  F  M   GV P+ +TFV LLTAC +SGLV EG   FH M++ +GI+
Sbjct: 450 GYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIE 508

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P  +HY C+VDL GRAGHL  A+NF+ NMP+ P  S+WGALL AC+IH ++ LG  A++R
Sbjct: 509 PRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAER 568

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF +D  N G+YV +SN+YA+   W+ V +VR L R++GL K  G+S IE+N K+  F  
Sbjct: 569 LFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQA 628

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G++THP+ ++I++E+ +L  ++K  G+VP    VL D+  +E E  L +HSERLAIA+G+
Sbjct: 629 GDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGL 688

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+PP + ++I KNLR C +CH   K IS++  REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 689 ISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 218/418 (52%), Gaps = 11/418 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y R G    A++ + +  +   + PD ++FP VLKAC  L     G+++H  + + 
Sbjct: 144 IVRCYSRHGFFGHAIEMYARMQVAC-VSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH 202

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFV   L+ +Y + G    A  +F  +  R   SW ++ISGY Q+G  +EAL I 
Sbjct: 203 GFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIF 262

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYA 175
            EMR   V  D I + S+L      +++  G  IH  ++K GL  EF+L +S  L ++YA
Sbjct: 263 SEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLIS--LTSLYA 320

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A   F+Q+    ++ WN++I+ Y ++     A   F  M+   I+PD +T+ S
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS 380

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
             +  AQ+     +R +  +I     F  DVI+  +++D YAK G ++ A  VF+ +P K
Sbjct: 381 SIAACAQIGSLELARWMDEYI-SMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK 439

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV+ W+ ++ GY  +G   E+I +F  M +   ++PN  T+V +L A  + G + +G  +
Sbjct: 440 DVVVWSAMMVGYGLHGQGRESIILFHAMRQAG-VSPNDVTFVGLLTACKNSGLVEEGWDL 498

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
             R+    +        C+VD+ G+ G +D A +    +P    V  W A++S   IH
Sbjct: 499 FHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/766 (36%), Positives = 450/766 (58%), Gaps = 62/766 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  +++ GRL  A++   +  L +G RPD +T P VLKAC  L     G   H  +   
Sbjct: 126 LIREHIKQGRLDSAINVSCRM-LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN 184

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR---DSGSWNAMISGYCQSGNAVEAL 114
           GFE +VF+  +L+ MY R G    A  +FD++  R   D  SWN+++S + +S NA  AL
Sbjct: 185 GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTAL 244

Query: 115 DILDEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           D+  +M L           D I++ +ILP C     +     +H   +++G   ++FV N
Sbjct: 245 DLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGN 304

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ----- 223
            LI+ YAK G+M +A++VF+ M  +DVVSWN+++A Y QS +   A   F  M++     
Sbjct: 305 ALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPL 364

Query: 224 ------------------------------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                         +G  P+ +T++S+ S  A L        +H
Sbjct: 365 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 424

Query: 254 GFIMRR---------GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNT 302
            + ++          G   ED+++ NA++DMY+K     +A ++F+ +P+  ++V++W  
Sbjct: 425 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 484

Query: 303 LITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           +I G+AQ G +++A+++F +M+ E   + PN  T   IL A +H+ A+R G +IHA V++
Sbjct: 485 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 544

Query: 362 N--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +        FVA CL+DMY KCG +D A  +F  + + S++ W ++++ +G+HG+G +AL
Sbjct: 545 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 604

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M   G  PD ITF+ +L ACSH G+V +G  YF  M  ++G+ P  +HY C +DL
Sbjct: 605 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 664

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
             R+G L  A   +++MP+ P A +W ALL ACR+H N+EL   A ++L E+++EN G Y
Sbjct: 665 LARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 724

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
            L+SNIYA  G+W+ V  +R L +  G+KK PG S ++       F+ G+R+HP   +IY
Sbjct: 725 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 784

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L +L  ++K++GYVP+ +F L DV+E+EK ++L  HSE+LA+A+G++++ P  PI+I 
Sbjct: 785 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRIT 844

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCH+   +IS+I + EI+VRD +RFHHFK+G CSCG YW
Sbjct: 845 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 230/478 (48%), Gaps = 60/478 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I  + + G    A+++   M   G   D  T+  +L  C    +   G   H  I 
Sbjct: 123 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 182

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPIT 213
            +G E N+F+ N L+ MY++ G +  A  +FD++ +R   DV+SWNSI++A+ +S++  T
Sbjct: 183 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 242

Query: 214 AHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           A   F+ M      +    + D++++V++      L     ++ VHG  +R G F  DV 
Sbjct: 243 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF-PDVF 301

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +GNA++D YAK G++ +A  VF  +  KDV+SWN ++ GY+Q+G    A E+F+ M + N
Sbjct: 302 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 361

Query: 328 -----------------------EIN-----------PNQGTYVSILPAYSHVGALRQGI 353
                                   +N           PN  T +S+L A + +GA  QG 
Sbjct: 362 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 421

Query: 354 KIHARVIKNCLCF----------DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVP 401
           +IHA  +KNCL            D+ V   L+DMY KC     A S+F  +P    + V 
Sbjct: 422 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 481

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQR-YFH 458
           W  +I  H  +G  + AL  F +M+ E  GV P+  T   +L AC+H   +  G++ + +
Sbjct: 482 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 541

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +++             C++D++ + G +  A +   +M  +   S W +++    +HG
Sbjct: 542 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHG 598



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 202/467 (43%), Gaps = 77/467 (16%)

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG---------------LEFNLFVS- 167
           GV + P   AS+L  C  ++ +     IH  I+  G               L    F+S 
Sbjct: 32  GVDVYPSHFASLLKECKSANTVHQ---IHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 88

Query: 168 ----NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
                 ++  Y   G   +AL V +++     V WN +I  + +     +A      M +
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 148

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           AG +PD  TL  +     +L   R   + HG I   G F  +V I NA+V MY++ G + 
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLE 207

Query: 284 SACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-----T 335
            A  +F+ +    + DVISWN++++ + ++  A  A+++F  M       P        +
Sbjct: 208 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF---- 391
            V+ILPA   + A+ Q  ++H   I+N    DVFV   L+D Y KCG +++A+ +F    
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 327

Query: 392 --------------------------YQVPRSSSVP-----WNAIISCHGIHGQGDKALN 420
                                     ++  R  ++P     W A+I+ +   G   +ALN
Sbjct: 328 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 387

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG--------QRYFHMMQEEFGIKPH-LK 471
            FRQM+  G  P+ +T +S+L+AC+  G  S+G        +     +  +FG +   L 
Sbjct: 388 LFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLM 447

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRIHGN 517
            Y  ++D++ +      A +   ++P+   +   W  ++G    +G+
Sbjct: 448 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 494


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/766 (36%), Positives = 450/766 (58%), Gaps = 62/766 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  +++ GRL  A++   +  L +G RPD +T P VLKAC  L     G   H  +   
Sbjct: 133 LIREHIKQGRLDSAINVSCRM-LRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN 191

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR---DSGSWNAMISGYCQSGNAVEAL 114
           GFE +VF+  +L+ MY R G    A  +FD++  R   D  SWN+++S + +S NA  AL
Sbjct: 192 GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTAL 251

Query: 115 DILDEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           D+  +M L           D I++ +ILP C     +     +H   +++G   ++FV N
Sbjct: 252 DLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGN 311

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ----- 223
            LI+ YAK G+M +A++VF+ M  +DVVSWN+++A Y QS +   A   F  M++     
Sbjct: 312 ALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPL 371

Query: 224 ------------------------------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                         +G  P+ +T++S+ S  A L        +H
Sbjct: 372 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 431

Query: 254 GFIMRR---------GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNT 302
            + ++          G   ED+++ NA++DMY+K     +A ++F+ +P+  ++V++W  
Sbjct: 432 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 491

Query: 303 LITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           +I G+AQ G +++A+++F +M+ E   + PN  T   IL A +H+ A+R G +IHA V++
Sbjct: 492 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 551

Query: 362 NCL--CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +        FVA CL+DMY KCG +D A  +F  + + S++ W ++++ +G+HG+G +AL
Sbjct: 552 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 611

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M   G  PD ITF+ +L ACSH G+V +G  YF  M  ++G+ P  +HY C +DL
Sbjct: 612 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 671

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
             R+G L  A   +++MP+ P A +W ALL ACR+H N+EL   A ++L E+++EN G Y
Sbjct: 672 LARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSY 731

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
            L+SNIYA  G+W+ V  +R L +  G+KK PG S ++       F+ G+R+HP   +IY
Sbjct: 732 TLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIY 791

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L +L  ++K++GYVP+ +F L DV+E+EK ++L  HSE+LA+A+G++++ P  PI+I 
Sbjct: 792 ALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRIT 851

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCH+   +IS+I + EI+VRD +RFHHFK+G CSCG YW
Sbjct: 852 KNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 230/478 (48%), Gaps = 60/478 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I  + + G    A+++   M   G   D  T+  +L  C    +   G   H  I 
Sbjct: 130 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 189

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPIT 213
            +G E N+F+ N L+ MY++ G +  A  +FD++ +R   DV+SWNSI++A+ +S++  T
Sbjct: 190 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 249

Query: 214 AHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           A   F+ M      +    + D++++V++      L     ++ VHG  +R G F  DV 
Sbjct: 250 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF-PDVF 308

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +GNA++D YAK G++ +A  VF  +  KDV+SWN ++ GY+Q+G    A E+F+ M + N
Sbjct: 309 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 368

Query: 328 -----------------------EIN-----------PNQGTYVSILPAYSHVGALRQGI 353
                                   +N           PN  T +S+L A + +GA  QG 
Sbjct: 369 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 428

Query: 354 KIHARVIKNCLCF----------DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVP 401
           +IHA  +KNCL            D+ V   L+DMY KC     A S+F  +P    + V 
Sbjct: 429 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 488

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQR-YFH 458
           W  +I  H  +G  + AL  F +M+ E  GV P+  T   +L AC+H   +  G++ + +
Sbjct: 489 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 548

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +++             C++D++ + G +  A +   +M  +   S W +++    +HG
Sbjct: 549 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHG 605



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 202/467 (43%), Gaps = 77/467 (16%)

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG---------------LEFNLFVS- 167
           GV + P   AS+L  C  ++ +     IH  I+  G               L    F+S 
Sbjct: 39  GVDVYPSHFASLLKECKSANTVHQ---IHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 95

Query: 168 ----NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
                 ++  Y   G   +AL V +++     V WN +I  + +     +A      M +
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 155

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           AG +PD  TL  +     +L   R   + HG I   G F  +V I NA+V MY++ G + 
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLE 214

Query: 284 SACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-----T 335
            A  +F+ +    + DVISWN++++ + ++  A  A+++F  M       P        +
Sbjct: 215 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF---- 391
            V+ILPA   + A+ Q  ++H   I+N    DVFV   L+D Y KCG +++A+ +F    
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 334

Query: 392 --------------------------YQVPRSSSVP-----WNAIISCHGIHGQGDKALN 420
                                     ++  R  ++P     W A+I+ +   G   +ALN
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 394

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG--------QRYFHMMQEEFGIKPH-LK 471
            FRQM+  G  P+ +T +S+L+AC+  G  S+G        +     +  +FG +   L 
Sbjct: 395 LFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLM 454

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRIHGN 517
            Y  ++D++ +      A +   ++P+   +   W  ++G    +G+
Sbjct: 455 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 501


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/688 (39%), Positives = 412/688 (59%), Gaps = 7/688 (1%)

Query: 23  LTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L  G++ +  TF  VL +  +   L  GK IH  V +     DVFV  +L++ Y + G  
Sbjct: 2   LLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSL 61

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             ARK+FD MP R  G+WN+MIS Y  S  + EA  I   M+ EG   D +T  SIL  C
Sbjct: 62  TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDAC 121

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
              +N+  G  +   I +   E +LFV   LI MYA+     +A +VF +M ++++++W+
Sbjct: 122 VNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWS 181

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +II A+        A  +F  MQQ GI P+ +T +SL +     +       +H  I   
Sbjct: 182 AIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEH 241

Query: 260 GWFMEDVIIGNAVVDMYAK--LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           G   +   + NA+V++Y +   G ++ A  + + +  + + +WN LI GY  +G + EA+
Sbjct: 242 G-LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           E +Q ++    I  ++ T++S+L A +   +L +G  IH+  ++  L  DV V   L +M
Sbjct: 301 ETYQRLQ-LEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNM 359

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG +++A  +F  +P  S+V WN ++  +  HG+ ++ L   R+M  EGV+ + ITF
Sbjct: 360 YSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITF 419

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           VS+L++CSH+GL++EG +YFH +  + GI+   +HYGC+VDL GRAG L  A  +I  MP
Sbjct: 420 VSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMP 479

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
             P+   W +LLGACR+H +++ G +A+ +L E+D  N    V++SNIY+  G W+   +
Sbjct: 480 SEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAK 539

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +R     R +KK PG SSI+V NKV  F   + +HP+  +IYD++  L   M+  GYVPD
Sbjct: 540 LRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPD 599

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
              VL DV+E++KE +L  HSE+LAIAFG+IS+P KS + IFKNLRVC DCH  TKFIS+
Sbjct: 600 TKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISK 659

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IT REI+VRD++RFHHF+DG CSC DYW
Sbjct: 660 ITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 228/458 (49%), Gaps = 18/458 (3%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M LEGV  + IT  ++L      D +  G  IH  + +     ++FV+  L+N Y K G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VFD M  R V +WNS+I+AY  S     A   F  MQ  G + D +T +S+   
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSI--- 117

Query: 240 VAQLNDCRNSRSV-HGFIMRRG----WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
              L+ C N  ++ HG  +R       F  D+ +G A++ MYA+     +A  VF  +  
Sbjct: 118 ---LDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQ 174

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K++I+W+ +IT +A +G   EA+  F+MM++   I PN+ T++S+L  ++    L +  +
Sbjct: 175 KNLITWSAIITAFADHGHCGEALRYFRMMQQ-EGILPNRVTFISLLNGFTTPSGLEELSR 233

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKC--GRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           IH  + ++ L     ++  LV++YG+C  G +D A  +  ++       WN +I+ + +H
Sbjct: 234 IHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLH 293

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G+  +AL  ++++  E +  D +TF+S+L AC+ S  ++EG +  H    E G+   +  
Sbjct: 294 GRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIV 352

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFE 530
              + +++ + G +  A     +MP+R   S W  +L A   HG  E  L  +       
Sbjct: 353 KNALTNMYSKCGSMENARRIFDSMPIRSAVS-WNGMLQAYAQHGESEEVLKLIRKMEQEG 411

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           V    + +  ++S+        EG     SL  DRG++
Sbjct: 412 VKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIE 449


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/696 (38%), Positives = 416/696 (59%), Gaps = 9/696 (1%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKLGFEWDVFVAASLL 70
           ++  F     ++ L+P+  T+   + A     D +    IH   +  G + ++ + ++++
Sbjct: 102 SLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIV 161

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS-MDP 129
            MY +F     ARK+FD MP +D+  WN MISGY ++   VE++ +  ++  E  + +D 
Sbjct: 162 KMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDT 221

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
            T+  ILP  A    +  G+ IH    K G   + +V    I++Y+K G ++ A  +F +
Sbjct: 222 TTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFRE 281

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
               D+V++N++I  Y  + +   +   F  +  +G +    TLVSL  +   L      
Sbjct: 282 FRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIY-- 339

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
            ++HG+ ++   F+    +  A+  +Y+KL  I SA  +F+  P K + SWN +I+GY Q
Sbjct: 340 -AIHGYSLKSN-FLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL  +AI +F+ M+  +E +PN  T   IL A + +GAL  G  +H  V        ++
Sbjct: 398 NGLTEDAISLFREMQN-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V+T L+ MY KCG I +A  LF  +P+ + V WN +IS +G+HG G +AL  F +ML+ G
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSG 516

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P  +TF+ +L ACSH+GLV EG   F+ M   +G +P +KHY C+VD+ GRAGHL  A
Sbjct: 517 IAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRA 576

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             FI+ MP++P  S+W  LLGACRIH +  L    S++LFE+D +NVGY+VL+SNI++  
Sbjct: 577 LQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSAD 636

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
             +     VR  A+ R L K PG++ IE+     +F +G+++HP+ + I+++L  L  KM
Sbjct: 637 RNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKM 696

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GY P+    L DVEE+E+E ++  HSERLAIAFG+I++ P + I+I KNLRVC DCH
Sbjct: 697 REAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCH 756

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             TK IS+ITER I+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 757 TATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 4/271 (1%)

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
            H  I+  G F  D+ +   +    + LG I  A  +F  +   DV  +N L+ G++ N 
Sbjct: 39  THAQIVLHG-FRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               ++ VF  + +  ++ PN  TY   + A S     R G  IH + I +    ++ + 
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLG 157

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           + +V MY K  R++DA  +F ++P   ++ WN +IS +  +    +++  FR +++E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           R D  T + +L A +    +  G +  H +  + G   H       + L+ + G + MA 
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQ-IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAS 276

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELG 521
              +    RPD   + A++     +G  EL 
Sbjct: 277 TLFREFR-RPDIVAYNAMIHGYTSNGETELS 306


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/708 (38%), Positives = 412/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A+  F +  L SGLRPD  T   +L AC ++ D   GK++H  +LK 
Sbjct: 216 LISGHAQCGHGECALQIFDEMQL-SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKA 274

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  +D     SLL +Y + G    A  +F+     +   WN M+  Y Q  +  ++ +I 
Sbjct: 275 GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T   IL  C  +  I  G  IH   +K+G E +++VS  LI+MY+K+
Sbjct: 335 GQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++ + + +RDVVSW S+IA Y Q +    A   F  MQ  G+ PD + L S  
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +   R    +H  +   G +  D+ I N +V++YA+ G    A ++F  +  KD 
Sbjct: 455 SACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDE 513

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN LI+G+ Q+ L  +A+ VF  M +      N  T++S + A +++  ++QG ++H 
Sbjct: 514 ITWNGLISGFGQSRLYEQALMVFMKMSQAGA-KYNVFTFISAISALANLADIKQGKQVHG 572

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R +K     +  VA  L+ +YGKCG I+DA  +F ++   + V WN II+    HG+G +
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M   +G+ P   HY C+V
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVV 692

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A  F+  MP+  +A IW  LL AC++H N+E+G +A+  L E++  +  
Sbjct: 693 DILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSA 752

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA  GKW   D+VR + +DRG++K PG S IEV N V  F+ G+R HP  ++
Sbjct: 753 SYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQ 812

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++  +GY  +   +  + E+++K+     HSE+LA+AFG+++ PP  P++
Sbjct: 813 IYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLR 872

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH+W KF S++T REI++RD  RFHHF  G CSCGDYW
Sbjct: 873 VIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/571 (28%), Positives = 280/571 (49%), Gaps = 29/571 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+S Y + G   EA   + Q   T+ + P  Y    VL AC        G+ IH  V K 
Sbjct: 115 MLSGYAQRGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  + FV  +L+ +Y  FG   +A ++F DM   D  ++N +ISG+ Q G+   AL I 
Sbjct: 174 AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIF 233

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           DEM+L G+  D +TVAS+L  CA   ++  G  +H Y++K G+ F+     +L+++Y K 
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC 293

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F+     +VV WN ++ AY Q +D   +   F  MQ  GI P+  T   + 
Sbjct: 294 GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCIL 353

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                         +H   ++ G F  D+ +   ++DMY+K   ++ A  + E L  +DV
Sbjct: 354 RTCTCTGQIELGEQIHSLSIKNG-FESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDV 412

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I GY Q+    EA+  F+ M++C  + P+     S   A + + A+RQG++IHA
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RV  +    D+ +   LV++Y +CGR ++A SLF ++     + WN +IS  G     ++
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQ 531

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M   G + +  TF+S ++A ++   + +G++  H    + G     +    ++
Sbjct: 532 ALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALI 590

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN-ME----------------- 519
            L+G+ G +  A      M +R + S W  ++ +C  HG  +E                 
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649

Query: 520 ---LGAVASDRLFEVDSENVGYYVLMSNIYA 547
              +G +A+     +  E + Y+  MSN+Y 
Sbjct: 650 VTFIGVLAACSHVGLVEEGLSYFKSMSNVYG 680



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 235/477 (49%), Gaps = 8/477 (1%)

Query: 37  VLKACRNLVDG----KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
            L+ACR   +      +IH + +  G   D  +   L+ +Y + GL   AR++F ++  R
Sbjct: 48  ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR 107

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D  SW AM+SGY Q G   EA  +  +M    V   P  ++S+L  C +      G +IH
Sbjct: 108 DHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             + K       FV N LI +Y  FG  + A RVF  M+  D V++N++I+ + Q     
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  MQ +G++PD +T+ SL +  A + D +  + +H ++++ G    D I   ++
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF-DYITEGSL 286

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +D+Y K G I +A  +F      +V+ WN ++  Y Q    +++ E+F  M+    I+PN
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATG-IHPN 345

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + TY  IL   +  G +  G +IH+  IKN    D++V+  L+DMY K   +D A  +  
Sbjct: 346 KFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE 405

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            + +   V W ++I+ +  H   ++AL  F++M D GV PD+I   S  +AC+    + +
Sbjct: 406 MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQ 465

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G +  H      G    +  +  +V+L+ R G    A +  + +    D   W  L+
Sbjct: 466 GLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLI 520


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/714 (38%), Positives = 420/714 (58%), Gaps = 15/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +++ + R G   EA+  +Y+  +  GLRPD   F   +  C   ++L  G+ +H  +L+ 
Sbjct: 29  IVAAFARNGHYREALG-YYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILET 87

Query: 58  GF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E+D+ +  +L+ MY R     +ARK FD+M  +   +WNA+I+GY ++G+   AL I
Sbjct: 88  QLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKI 147

Query: 117 LDEM---RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
             +M     EG+  D IT +S L  C+   +I  G  I    V  G   +  V N LINM
Sbjct: 148 YQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINM 207

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y+K G +  A +VFD++  RDV++WN++I+ Y +      A   F  M     +P+++T 
Sbjct: 208 YSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTF 267

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGL 292
           + L +    L D    R++H  +   G +  D++IGN +++MY K    +  A  VFE L
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVKEHG-YESDLVIGNVLLNMYTKCSSSLEEARQVFERL 326

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             +DVI+WN LI  Y Q G A +A+++F+ M+  N + PN+ T  ++L A + +GA RQG
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN-VAPNEITLSNVLSACAVLGAKRQG 385

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA +       DV +   L++MY +CG +DD + +F  +   S V W+ +I+ +  H
Sbjct: 386 KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQH 445

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G     L  F ++L EG+  D +T VS L+ACSH G++ EG + F  M  + G+ P  +H
Sbjct: 446 GHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRH 505

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           + CMVDL  RAG L  A N I +MP  PDA  W +LL  C++H + +  A  +D+LFE++
Sbjct: 506 FLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELE 565

Query: 533 SENVGYYV-LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           SE+    V L+SN+YA  G+W   D+VR     R  +K PG S IE+N+ V  F  G+++
Sbjct: 566 SEDEHSTVTLLSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKS 622

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ E I  E++ L+ +MK  GYVPD   VL +V+E+EKE +L  HSE+LAIA+G+IS+P
Sbjct: 623 HPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTP 682

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P +P+ I KNLR C DCH   KFIS+I  R+I+VRDS RFHHF++G CSC DYW
Sbjct: 683 PGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 240/457 (52%), Gaps = 13/457 (2%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY + G    A  +F  +   +S SW  +++ + ++G+  EAL     M LEG+  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
               + VC+ S ++  G L+H  I++   LEF++ +   LI MYA+   +  A + FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLNDCR 247
            ++ +V+WN++IA Y ++ D   A   +  M      G++PD +T  S     + + D  
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             R +    +  G +  D I+ NA+++MY+K G + SA  VF+ L  +DVI+WNT+I+GY
Sbjct: 181 QGREIEARTVASG-YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           A+ G A++A+E+FQ M   N+  PN  T++ +L A +++  L QG  IH +V ++    D
Sbjct: 240 AKQGAATQALELFQRMGP-NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESD 298

Query: 368 VFVATCLVDMYGKC-GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           + +   L++MY KC   +++A  +F ++     + WN +I  +  +GQ   AL+ F+QM 
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            E V P+ IT  ++L+AC+  G   +G +  H +      K  +     +++++ R G L
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 487 GMAHNFIQNMPVRPDASI--WGALLGACRIHGNMELG 521
               + +       D S+  W  L+ A   HG+   G
Sbjct: 418 D---DTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/694 (39%), Positives = 415/694 (59%), Gaps = 2/694 (0%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH 71
           S ++  +      + L PD +T+   + AC N      +H   +  G+  +VFV ++L+ 
Sbjct: 92  SSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVD 151

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           +YC+F     ARK+FD MP RD+  WN MI+G  ++    +++ +  EM  +GV +D  T
Sbjct: 152 LYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSST 211

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           V ++LP  A    +  G+ I    +K G  F  +V   LI++Y+K G +  A  +F ++ 
Sbjct: 212 VTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRIN 271

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
             D++++N++I+ +  +     +   F  +  +G +    T+V L  + +       + S
Sbjct: 272 RPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACS 331

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HGF ++ G  +   +   A   +Y KL  I+ A  +F+  P K V++WN +I+GY QNG
Sbjct: 332 IHGFCVKSGIILNPTV-STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNG 390

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               AI +F+ M +  E  PN  T  +IL A + +G+L  G  +H  +    L  +++V+
Sbjct: 391 STETAISLFKEMMK-TEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVS 449

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T LVDMY KCG I +A  LF  +   ++V WN +I  +G+HG G +AL  + +ML  G  
Sbjct: 450 TALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN 509

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P  +TF+S+L ACSH+GLV EG+  FH M  ++ I+P ++HY CMVD+ GR+G L  A  
Sbjct: 510 PSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALE 569

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI+ MPV P  ++WG LLGAC IH + ++  +AS+RLFE+D  +VGYYVL+SNIY+    
Sbjct: 570 FIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERN 629

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +     +R + + R L K+PG + IEVN    +F +G+R+H     IY +L  LT KM+ 
Sbjct: 630 FPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMRE 689

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
           +GY  +    L DVEE+EKE  +  HSE+LAIAFG+I++ P + I+I KNLRVC DCH  
Sbjct: 690 MGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTA 749

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           TKFIS+ITER I+VRD+NRFHHFKDGICSCGDYW
Sbjct: 750 TKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 207/482 (42%), Gaps = 52/482 (10%)

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           I  AS  P  A++         H   + +G  F+L     L      F   RHA  +F  
Sbjct: 19  INKASTFPHLAQT---------HAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFS 69

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRN 248
           + + D+  +N ++  +  ++ P ++   +T +++   + PD  T     ++ A  ND ++
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYA--FAVAACSND-KH 126

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
              +H   +  G+   +V +G+A+VD+Y K   +  A  VF+G+P +D + WNT+I G  
Sbjct: 127 LMLLHAHSIIDGY-GSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           +N    ++I++F+ M   + +  +  T  ++LPA + +  L+ G+ I    +K    F  
Sbjct: 186 KNCCFDDSIQLFREM-VADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCD 244

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +V T L+ +Y KCG ++ A  LF ++ R   + +NA+IS    +G  + ++  FR++L  
Sbjct: 245 YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFS 304

Query: 429 GVR----------PDHITFVSLLTACSHSGL-----------VSEGQRYFHMMQEEFGIK 467
           G R          P H  F  L  ACS  G            VS      +    E  + 
Sbjct: 305 GERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLA 364

Query: 468 PHL---------KHYGCMVDLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIH 515
            HL           +  M+  + + G    A +  + M      P+A     +L AC   
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424

Query: 516 GNMELGAVASDRLFEVDSE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           G++  G      +   + E N+     + ++YA  G    + E   L      K T  W+
Sbjct: 425 GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGN---ISEAWQLFDSMSEKNTVTWN 481

Query: 575 SI 576
           ++
Sbjct: 482 TM 483


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/639 (41%), Positives = 411/639 (64%), Gaps = 17/639 (2%)

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
           L  +  K FD   V    SWN++I+   + G++ E+L     MR   +  +  T    + 
Sbjct: 34  LTTLFNKYFDRTDVY---SWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIK 90

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            C+   ++ SG   H   +  G E +LFVS+ LI+MY+K G + +A  +FD++  R++V+
Sbjct: 91  SCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVT 150

Query: 198 WNSIIAAYEQSNDPITAHGFFTTM---------QQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           W S+I  Y Q++D   A   F            ++ G   D + ++S+ S  +++++   
Sbjct: 151 WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAV 210

Query: 249 SRSVHGFIMRRGWFMEDVIIG--NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           S  VHG  ++ G    D ++G  N ++D YAK G ++ +  VF+ +  KDV+SWN++I  
Sbjct: 211 SEGVHGVAIKVGL---DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAV 267

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YAQNGL+++A EVF  M +      N+ T  ++L A +H GALR G+ +H +VIK     
Sbjct: 268 YAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN 327

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +V +AT ++DMY KCG+ + A + F  +   +   W A+I+ +G+HG   +AL+ F QM+
Sbjct: 328 NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             GV+P++ITF+S+L ACSH+G + EG R+F+ M  E+ ++P ++HYGCMVDL GRAG++
Sbjct: 388 WAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYI 447

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A+N I++M VR D  +WG+LL ACRIH ++EL  +++  LF++D  N GYYVL++NIY
Sbjct: 448 KEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIY 507

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A+ G+W+ V+ +R L +DRGL K PG+S +E+  +V +F  G++ HP++EKIY  L  L+
Sbjct: 508 ADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELS 567

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            K++  GYVP+ + VL DV+E+EKE I+  HSE+LA+AFG+++S P S I + KNLRVCG
Sbjct: 568 VKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCG 627

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K IS+I  REIIVRD+ RFHHFKDG+CSCGDYW
Sbjct: 628 DCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 228/432 (52%), Gaps = 28/432 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G   E++  F  +     ++P+  TFP  +K+C  L D   GK+ H   L  
Sbjct: 53  LIAELARGGDSCESLRAF-SWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVF 111

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D+FV+++L+ MY + G  + AR LFD++P R+  +W ++I+GY Q+ +A EAL + 
Sbjct: 112 GFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVF 171

Query: 118 DEMRLE---------GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
            E   E         G S+D + + S+L  C+R  N      +H   +K GL+  + V N
Sbjct: 172 KEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVEN 231

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQ 227
            L++ YAK G +  + +VFD M E+DVVSWNS+IA Y Q+     A   F  M +A G +
Sbjct: 232 TLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGK 291

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            + +TL +L    A     R    +H  +++ G ++ +VI+  +++DMY K G    A  
Sbjct: 292 YNEVTLSTLLLACAHEGALRVGMCLHDQVIKMG-YVNNVIMATSIIDMYCKCGQAEMARN 350

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F+G+  K+V SW  +I GY  +G A EA++VF  M     + PN  T++S+L A SH G
Sbjct: 351 AFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAG-VKPNYITFISVLAACSHAG 409

Query: 348 ALRQGIKIHARVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            L +G +       N +  +  V        C+VD+ G+ G I +A +L   +  R   V
Sbjct: 410 FLEEGWRWF-----NAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFV 464

Query: 401 PWNAIISCHGIH 412
            W ++++   IH
Sbjct: 465 LWGSLLAACRIH 476


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/708 (38%), Positives = 412/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A+  F +  L SGLRPD  T   +L AC ++ D   GK++H  +LK 
Sbjct: 216 LISGHAQCGHGECALQIFDEMQL-SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKA 274

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  +D     SLL +Y + G    A  +F+     +   WN M+  Y Q  +  ++ +I 
Sbjct: 275 GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T   IL  C  +  I  G  IH   +K+G E +++VS  LI+MY+K+
Sbjct: 335 GQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++ + + +RDVVSW S+IA Y Q +    A   F  MQ  G+ PD + L S  
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +   R    +H  +   G +  D+ I N +V++YA+ G    A ++F  +  KD 
Sbjct: 455 SACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDE 513

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN LI+G+ Q+ L  +A+ VF  M +      N  T++S + A +++  ++QG ++H 
Sbjct: 514 ITWNGLISGFGQSRLYKQALMVFMKMGQAGA-KYNVFTFISAISALANLADIKQGKQVHG 572

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R +K     +  VA  L+ +YGKCG I+DA  +F ++   + V WN II+    HG+G +
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M   +G+ P   HY C+V
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVV 692

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A  F+  MP+  +A IW  LL AC++H N+E+G +A+  L E++  +  
Sbjct: 693 DILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSA 752

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA  GKW   D+VR + +DRG++K PG S IEV N V  F+ G+R HP  ++
Sbjct: 753 SYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQ 812

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++  +GY  +   +  + E+++K+     HSE+LA+AFG+++ PP  P++
Sbjct: 813 IYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLR 872

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH+W K  S++T REI++RD  RFHHF  G CSCGDYW
Sbjct: 873 VIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/571 (28%), Positives = 280/571 (49%), Gaps = 29/571 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+S Y + G   EA   + Q   T+ + P  Y    VL AC        G+ IH  V K 
Sbjct: 115 MLSGYAQSGLGKEAFRLYSQMHWTAVI-PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  + FV  +L+ +Y  FG   +A ++F DM   D  ++N +ISG+ Q G+   AL I 
Sbjct: 174 AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIF 233

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           DEM+L G+  D +TVAS+L  CA   ++  G  +H Y++K G+ F+     +L+++Y K 
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC 293

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F+     +VV WN ++ AY Q +D   +   F  MQ  GI P+  T   + 
Sbjct: 294 GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCIL 353

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                         +H   ++ G F  D+ +   ++DMY+K G ++ A  + E L  +DV
Sbjct: 354 RTCTCTGQIELGEQIHSLSIKNG-FESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDV 412

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I GY Q+    EA+  F+ M++C  + P+     S   A + + A+RQG++IHA
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RV  +    D+ +   LV++Y +CGR ++A SLF ++     + WN +IS  G      +
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQ 531

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M   G + +  TF+S ++A ++   + +G++  H    + G     +    ++
Sbjct: 532 ALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALI 590

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG-NME----------------- 519
            L+G+ G +  A      M +R + S W  ++ +C  HG  +E                 
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649

Query: 520 ---LGAVASDRLFEVDSENVGYYVLMSNIYA 547
              +G +A+     +  E + Y+  MSN+Y 
Sbjct: 650 VTFIGVLAACSHVGLVEEGLSYFKSMSNVYG 680



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 237/477 (49%), Gaps = 8/477 (1%)

Query: 37  VLKACRNLVDG----KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
            L+ACR   +      +IH + +  G   D  +   L+ +Y + GL   AR++F ++  R
Sbjct: 48  ALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSR 107

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D  SW AM+SGY QSG   EA  +  +M    V   P  ++S+L  C +      G +IH
Sbjct: 108 DHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             + K       FV N LI +Y  FG  + A RVF  M+  D V++N++I+ + Q     
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  MQ +G++PD +T+ SL +  A + D +  + +H ++++ G    D I   ++
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF-DYITEGSL 286

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +D+Y K G I +A  +F      +V+ WN ++  Y Q    +++ E+F  M+    I+PN
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATG-IHPN 345

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           Q TY  IL   +  G +  G +IH+  IKN    D++V+  L+DMY K G +D A  +  
Sbjct: 346 QFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE 405

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            + +   V W ++I+ +  H   ++AL  F++M D GV PD+I   S  +AC+    + +
Sbjct: 406 MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQ 465

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G +  H      G    +  +  +V+L+ R G    A +  + +    D   W  L+
Sbjct: 466 GLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLI 520


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 424/708 (59%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+  +  +A+  F +  + SG++P  + F  V+ AC   RN+  G+++H  V+++
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ DVF A +L+ MY + G  ++A  +F+ MP  D  SWNA+ISG   +G+   A+++L
Sbjct: 232 GYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T++SIL  C+ +     G  IH +++K   + + ++   L++MYAK 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A +VFD M  RD++  N++I+          A   F  +++ G+  +  TL ++ 
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L     +R VH   ++ G F+ D  + N ++D Y K   ++ A  VFE     D+
Sbjct: 412 KSTASLEAASTTRQVHALAVKIG-FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDI 470

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+  ++IT  +Q      AI++F  M     + P+     S+L A + + A  QG ++HA
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D F    LV  Y KCG I+DA   F  +P    V W+A+I     HG G +
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M+DEG+ P+HIT  S+L AC+H+GLV E +RYF+ M+E FGI    +HY CM+
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMI 649

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   + +MP + +ASIWGALLGA R+H + ELG +A+++LF ++ E  G
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSG 709

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++N YA+ G W  V +VR L +D  +KK P  S IEV +KV  F  G+++HP  ++
Sbjct: 710 THVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKE 769

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   M   G+VP+    L D++  EKE +L+ HSERLA+AF ++S+PP +PI+
Sbjct: 770 IYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIR 829

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS+I  REII+RD NRFHHF+DG CSCGDYW
Sbjct: 830 VKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 257/519 (49%), Gaps = 8/519 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y   G    A+  F+      G+  + +  P VLK   +   G ++H   +  GF 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMR-AEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFG 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILDE 119
            DVFVA +L+ MY  FG  + AR++F++    R++ SWN ++S Y ++    +A+ +  E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+       + ++  C  S NI +G  +H  +V+ G + ++F +N L++MY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  +F++M + DVVSWN++I+    +     A      M+ +G+ P++ TL S+   
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            +        R +HGF+++     +D  IG  +VDMYAK   ++ A  VF+ +  +D+I 
Sbjct: 313 CSGAGAFDLGRQIHGFMIKANADSDD-YIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
            N LI+G +  G   EA+ +F  + +   +  N+ T  ++L + + + A     ++HA  
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRK-EGLGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K    FD  V   L+D Y KC  + DA  +F +      +   ++I+       G+ A+
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVD 478
             F +ML +G+ PD     SLL AC+      +G Q + H+++ +F       +   +V 
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVY 548

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            + + G +  A     ++P R   S W A++G    HG+
Sbjct: 549 TYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH 586



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 215/430 (50%), Gaps = 15/430 (3%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A + L+ G  +H S+LK G          L+  Y +      AR++FD++P     SW++
Sbjct: 16  AAQALLPGAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +++ Y  +G    A+     MR EGV  +   +  +L  C     +  G  +H   +  G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL--GAQVHAMAMATG 130

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFF 218
              ++FV+N L+ MY  FG M  A RVF++   ER+ VSWN +++AY +++    A   F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             M  +GIQP   T    + +V      RN    R VH  ++R G + +DV   NA+VDM
Sbjct: 191 GEMVWSGIQP---TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG-YDKDVFTANALVDM 246

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K+G ++ A  +FE +P  DV+SWN LI+G   NG    AIE+   M+    + PN  T
Sbjct: 247 YMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFT 305

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             SIL A S  GA   G +IH  +IK     D ++   LVDMY K   +DDA  +F  + 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               +  NA+IS     G+ D+AL+ F ++  EG+  +  T  ++L + + S   +   R
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-SLEAASTTR 424

Query: 456 YFHMMQEEFG 465
             H +  + G
Sbjct: 425 QVHALAVKIG 434



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 197/408 (48%), Gaps = 13/408 (3%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T++  L   A +  +L G  +H  ++K G   +    N+LI+ Y+K      A RVFD++
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEI 63

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +   VSW+S++ AY  +  P +A   F  M+  G+        +L  ++  + D R   
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV---CCNEFALPVVLKCVPDARLGA 120

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISWNTLITGYAQ 309
            VH   M  G F  DV + NA+V MY   G ++ A  VF E    ++ +SWN L++ Y +
Sbjct: 121 QVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N    +AI+VF  M   + I P +  +  ++ A +    +  G ++HA V++     DVF
Sbjct: 180 NDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            A  LVDMY K GR+D A  +F ++P S  V WNA+IS   ++G   +A+    QM   G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P+  T  S+L ACS +G    G++    M +           G +VD++ +   L  A
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDA 357

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
                 M  R D  +  AL+  C  HG     A++    +E+  E +G
Sbjct: 358 RKVFDWMFHR-DLILCNALISGCS-HGGRHDEALS--LFYELRKEGLG 401


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 423/709 (59%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI +Y + G    A+  FYQ      + P   T+  +L AC    +L DG +IH  +L+ 
Sbjct: 77  MIGIYCQQGDYDRALGMFYQMQ-EEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQ 135

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFV  +L++MY + G    A   F  +  RD  SW AMI+   Q      A  + 
Sbjct: 136 GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLY 195

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+L+GV  + IT+ ++         +  G  I+  +    +E ++ V N+ +NM+   
Sbjct: 196 RRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNA 255

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A R+F+ M++RDVV+WN +I  Y Q+ +   A   F  +QQ GI+ + +T V + 
Sbjct: 256 GLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLML 315

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           ++   L      + +H  +   G +  DV++  A++ +Y +      A  +F  +  KDV
Sbjct: 316 NVYTSLTSLAKGKVIHELVKEAG-YDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 374

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  +   YAQNG   EA+++FQ M+      P   T V++L   +H+ AL++G +IH+
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQ-LEGRRPTSATLVAVLDTCAHLAALQKGRQIHS 433

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+N    ++ V T L++MYGKCG++ +A S+F ++ +   + WN+++  +  HG  D+
Sbjct: 434 HIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDE 493

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F QM  +G + D ++FVS+L+A SHSG V++G +YF  M ++F I P  + YGC+V
Sbjct: 494 TLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVV 553

Query: 478 DLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           DL GRAG +  A + +  +    PD  +W  LLGACR H   +    A++++ E D  + 
Sbjct: 554 DLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHS 613

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YV++SN+YA  G W+GV+ +R L R RG+KK PG SSIE+ N+V  F  G+R+HP+  
Sbjct: 614 GAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRH 673

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            IY EL  L ++M++ GY+PD   +L DVE++ KE +L  HSERLAIAFG++S+PP +P+
Sbjct: 674 PIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPL 733

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCH  TK+IS++  REI+VRD++RFH+FKDG CSC DYW
Sbjct: 734 RVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/494 (30%), Positives = 257/494 (52%), Gaps = 9/494 (1%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
            +PD   F  +L+ C   +N+  G+++H  V   GFE +  V   L+ MY + G    A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           ++F+ +  +D  +W  MI  YCQ G+   AL +  +M+ E V    +T  +IL  CA ++
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           ++  G+ IH  I++ G E ++FV   LINMY K G +R A   F ++  RDVVSW ++IA
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q +    A   +  MQ  G+ P+ +TL ++ +     +     + ++  +  R   M
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSR--VM 238

Query: 264 E-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           E DV + N+ ++M+   G++  A  +FE +  +DV++WN +IT Y QN    EA+ +F  
Sbjct: 239 ESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGR 298

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           +++ + I  N  T+V +L  Y+ + +L +G  IH  V +     DV VAT L+ +YG+C 
Sbjct: 299 LQQ-DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCE 357

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
               A  +F  +     + W  +   +  +G   +AL  F++M  EG RP   T V++L 
Sbjct: 358 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 417

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            C+H   + +G R  H    E G +  +     +++++G+ G +  A +  + M  R D 
Sbjct: 418 TCAHLAALQKG-RQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKR-DI 475

Query: 503 SIWGALLGACRIHG 516
            +W ++LGA   HG
Sbjct: 476 LVWNSMLGAYAQHG 489


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/665 (40%), Positives = 412/665 (61%), Gaps = 2/665 (0%)

Query: 42  RNLVDGKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAM 100
           ++   G+++H  ++     E + ++   L   Y   GL + A  +FD + +++S  WN M
Sbjct: 73  KSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFM 132

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           I GY  +G  +++L +  EM   G   D  T   +L  C     +  G  +H  +V  GL
Sbjct: 133 IRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGL 192

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E +++V N+L+ MYAKFG M  A  VFD+M ERD+ SWN++I+ Y ++ D  TA   F  
Sbjct: 193 ESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDL 252

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M +AG+  D  TL+ L S  A L   +  + +HG+ +R      +    N++++MY    
Sbjct: 253 MGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCN 312

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +  A  +FE +  KD +SWN++I GYA+NG A E++ +F+ M   +   P+Q T++++L
Sbjct: 313 CMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMA-LDGSGPDQVTFIAVL 371

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A   + ALR G+ IH+ ++K     +  V T LVDMY KCG +  +  +F ++P  S V
Sbjct: 372 GACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLV 431

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W+A+++ +G+HG+G +A++    M    V PD+  F S+L+ACSH+GLV EG+  F+ M
Sbjct: 432 SWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKM 491

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           ++E+ +KP L HY CMVDL GRAGHL  A+  I+ M ++P + IW ALL A R+H N++L
Sbjct: 492 EKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKL 551

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
             +++ ++F+++ + V  Y+ +SNIYA   +W+ V+ VR++ R +GLKK+PG S IE++N
Sbjct: 552 AEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDN 611

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
            V  F  G+++H + E IY +L  L  ++K  GY PD S V  DVEE+ KE +L  HSER
Sbjct: 612 MVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSER 671

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LAIAF +I++ P + I+I KNLRVCGDCH  TK IS++T REII+RD +RFHHF  G CS
Sbjct: 672 LAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCS 731

Query: 701 CGDYW 705
           CGDYW
Sbjct: 732 CGDYW 736



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/404 (33%), Positives = 225/404 (55%), Gaps = 14/404 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+  L  G R D +T+P VLKAC +L+    G+++H  V+  G E D++V  SLL MY 
Sbjct: 148 LYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYA 207

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           +FG    AR +FD M  RD  SWN MISGY ++ ++  A  + D M   G+  D  T+  
Sbjct: 208 KFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLG 267

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           +L  CA    +  G +IH Y V++ +  +N F +N+LI MY     M  A R+F+++  +
Sbjct: 268 LLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWK 327

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D VSWNS+I  Y ++ D   +   F  M   G  PD +T +++     Q+   R   S+H
Sbjct: 328 DTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIH 387

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            +++++G F  + I+G A+VDMY+K G +  +  VF+ +P K ++SW+ ++ GY  +G  
Sbjct: 388 SYLVKKG-FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRG 446

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-- 371
            EAI +   M + N + P+ G + SIL A SH G + +G +I  ++ K    ++V  A  
Sbjct: 447 REAISILDGM-KANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE---YNVKPALS 502

Query: 372 --TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
             +C+VD+ G+ G +D+A  +   +  + +S  W A+++   +H
Sbjct: 503 HYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 4/212 (1%)

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV-SILPAYSHVGALRQGIKIHAR 358
           +N+  + ++Q  +A        M E   +  P       ++L ++++  + +QG ++HA 
Sbjct: 25  YNSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAH 84

Query: 359 VIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +I  + L  + ++ T L   Y  CG +  A  +F  +   +S  WN +I  +  +G   K
Sbjct: 85  MISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMK 144

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           +L  +R+ML  G R D+ T+  +L AC    LV  G+R  H      G++  +     ++
Sbjct: 145 SLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRR-VHSEVVVCGLESDIYVGNSLL 203

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            ++ + G +G A      M  R D + W  ++
Sbjct: 204 AMYAKFGDMGTARMVFDRMAER-DLTSWNTMI 234


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/706 (38%), Positives = 429/706 (60%), Gaps = 21/706 (2%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRN------LVDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           ++  L   + P  +T   V  AC N      L+ GK++H   L+ G E + F+  +L+ M
Sbjct: 183 FRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAM 241

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    ++ L      RD  +WN ++S  CQ+   +EAL+ L EM LEGV  D  T+
Sbjct: 242 YGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTI 301

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +S+LP C+  + + +G  +H Y +K+G L+ N FV + L++MY     +    RVFD M 
Sbjct: 302 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMF 361

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R +  WN++I  Y Q+     A   F  M++ AG+  +  T+  +     +        
Sbjct: 362 DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKE 421

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           ++HGF+++RG    D  + NA++DMY++LG I+ A  +F  +  +D+++WNT+ITGY  +
Sbjct: 422 AIHGFVVKRG-LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS 480

Query: 311 GLASEAIEVFQMME----ECNE------INPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
               +A+ +   M+    + +E      + PN  T ++ILP+ + + AL +G +IHA  I
Sbjct: 481 ERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 540

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN L  DV V + LVDMY KCG +  +  +F Q+P  + + WN I+  +G+HG    A++
Sbjct: 541 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAID 600

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             R M+ +GV+P+ +TF+S+  ACSHSG+V+EG + F+ M++++G++P   HY C+VDL 
Sbjct: 601 MLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLL 660

Query: 481 GRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           GRAG +  A+  I  +P   D A  W +LLGACRIH N+E+G +A+  L +++     +Y
Sbjct: 661 GRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHY 720

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL++NIY++ G W    EVR   + +G++K PG S IE  ++V  F  G+ +HP+ EK+ 
Sbjct: 721 VLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLR 780

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  L  +M+  GY+PD S VL +VEEDEKE +L  HSE+LAIAFGI+++ P + I++ 
Sbjct: 781 GYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 840

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC DCH  TKFIS++ +REII+RD  RFHHFK+G CSCGDYW
Sbjct: 841 KNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 157/532 (29%), Positives = 266/532 (50%), Gaps = 22/532 (4%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
           VR   L EAV  +    +  G++PD + FP +LKA  +L D   GK+IH  V K G+  D
Sbjct: 69  VRSNLLREAVLTYIDMIVL-GIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVD 127

Query: 63  -VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V VA +L+++Y + G      K+FD +  R+  SWN++IS  C       AL+    M 
Sbjct: 128 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 187

Query: 122 LEGVSMDPITVASILPVCAR---SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            E V     T+ S+   C+     + +L G  +H Y ++ G E N F+ N L+ MY K G
Sbjct: 188 DEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMG 246

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  +  +      RD+V+WN+++++  Q+   + A  +   M   G++PD  T+ S+  
Sbjct: 247 KLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLP 306

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             + L   R  + +H + ++ G   E+  +G+A+VDMY     + S C VF+G+  + + 
Sbjct: 307 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIG 366

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            WN +ITGYAQN    EA+ +F  MEE   +  N  T   ++PA    GA  +   IH  
Sbjct: 367 LWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGF 426

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V+K  L  D FV   L+DMY + G+ID A  +F ++     V WN II+ +    + + A
Sbjct: 427 VVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDA 486

Query: 419 LNFFRQM--LDE---------GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           L    +M  L+           ++P+ IT +++L +C+    +++G+   H    +  + 
Sbjct: 487 LLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLA 545

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +     +VD++ + G L M+      +P+R +   W  ++ A  +HGN +
Sbjct: 546 TDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQ 596



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 197/419 (47%), Gaps = 11/419 (2%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W  ++    +S    EA+    +M + G+  D     ++L   A   ++  G  IH ++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 157 KHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K G   + + V+N L+N+Y K G      +VFD++ ER+ VSWNS+I++         A 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQL---NDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             F  M    ++P   TLVS+    +           + VH + +R+G     +I  N +
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII--NTL 238

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V MY K+G + S+  +      +D+++WNT+++   QN    EA+E  + M     + P+
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREM-VLEGVEPD 297

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
             T  S+LPA SH+  LR G ++HA  +KN  L  + FV + LVDMY  C ++     +F
Sbjct: 298 GFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVF 357

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLV 450
             +       WNA+I+ +  +   ++AL  F +M +  G+  +  T   ++ AC  SG  
Sbjct: 358 DGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAF 417

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           S+ +   H    + G+         ++D++ R G + +A      M  R D   W  ++
Sbjct: 418 SK-KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTII 474


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 424/708 (59%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S YV+  +  +A+  F +  + SG++P  + F  V+ AC   RN+  G+++H  V+++
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ DVF A +L+ MY + G  ++A  +F+ MP  D  SWNA+ISG   +G+   A+++L
Sbjct: 232 GYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T++SIL  C+ +     G  IH +++K   + + ++   L++MYAK 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A +VFD M  RD++  N++I+          A   F  +++ G+  +  TL ++ 
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L     +R VH   ++ G F+ D  + N ++D Y K   ++ A  VFE     D+
Sbjct: 412 KSTASLEAASTTRQVHALAVKIG-FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDI 470

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+  ++IT  +Q      AI++F  M     + P+     S+L A + + A  QG ++HA
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D F    LV  Y KCG I+DA   F  +P    V W+A+I     HG G +
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M+DEG+ P+HIT  S+L AC+H+GLV E +RYF+ M+E FGI    +HY CM+
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMI 649

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   + +MP + +ASIWGALLGA R+H + ELG +A+++LF ++ E  G
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSG 709

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL++N YA+ G W  V +VR L +D  +KK P  S IEV +KV  F  G+++HP  ++
Sbjct: 710 THVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKE 769

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +L  L   M   G+VP+    L D++  EKE +L+ HSERLA+AF ++S+PP +PI+
Sbjct: 770 IYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIR 829

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+C DCH   KFIS+I  REII+RD NRFHHF+DG CSCGDYW
Sbjct: 830 VKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 257/519 (49%), Gaps = 8/519 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y   G    A+  F+      G+  + +  P VLK   +   G ++H   +  GF 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMR-AEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFG 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILDE 119
            DVFVA +L+ MY  FG  + AR++F++    R++ SWN ++S Y ++    +A+ +  E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+       + ++  C  S NI +G  +H  +V+ G + ++F +N L++MY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  +F++M + DVVSWN++I+    +     A      M+ +G+ P++ TL S+   
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            +        R +HGF+++     +D  IG  +VDMYAK   ++ A  VF+ +  +D+I 
Sbjct: 313 CSGAGAFDLGRQIHGFMIKANADSDDY-IGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
            N LI+G +  G   EA+ +F  + +   +  N+ T  ++L + + + A     ++HA  
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRK-EGLGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K    FD  V   L+D Y KC  + DA  +F +      +   ++I+       G+ A+
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVD 478
             F +ML +G+ PD     SLL AC+      +G Q + H+++ +F       +   +V 
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVY 548

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            + + G +  A     ++P R   S W A++G    HG+
Sbjct: 549 TYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH 586



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 214/430 (49%), Gaps = 15/430 (3%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A + L+ G  +H S+LK G          L+  Y +      AR+ FD++P     SW++
Sbjct: 16  AAQALLPGAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSS 73

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +++ Y  +G    A+     MR EGV  +   +  +L  C     +  G  +H   +  G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDARL--GAQVHAMAMATG 130

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFF 218
              ++FV+N L+ MY  FG M  A RVF++   ER+ VSWN +++AY +++    A   F
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             M  +GIQP   T    + +V      RN    R VH  ++R G + +DV   NA+VDM
Sbjct: 191 GEMVWSGIQP---TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG-YDKDVFTANALVDM 246

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K+G ++ A  +FE +P  DV+SWN LI+G   NG    AIE+   M+    + PN  T
Sbjct: 247 YMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFT 305

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             SIL A S  GA   G +IH  +IK     D ++   LVDMY K   +DDA  +F  + 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               +  NA+IS     G+ D+AL+ F ++  EG+  +  T  ++L + + S   +   R
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-SLEAASTTR 424

Query: 456 YFHMMQEEFG 465
             H +  + G
Sbjct: 425 QVHALAVKIG 434



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 196/408 (48%), Gaps = 13/408 (3%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T++  L   A +  +L G  +H  ++K G   +    N+LI+ Y+K      A R FD++
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEI 63

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +   VSW+S++ AY  +  P +A   F  M+  G+        +L  ++  + D R   
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV---CCNEFALPVVLKCVPDARLGA 120

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISWNTLITGYAQ 309
            VH   M  G F  DV + NA+V MY   G ++ A  VF E    ++ +SWN L++ Y +
Sbjct: 121 QVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N    +AI+VF  M   + I P +  +  ++ A +    +  G ++HA V++     DVF
Sbjct: 180 NDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            A  LVDMY K GR+D A  +F ++P S  V WNA+IS   ++G   +A+    QM   G
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P+  T  S+L ACS +G    G++    M +           G +VD++ +   L  A
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDA 357

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
                 M  R D  +  AL+  C  HG     A++    +E+  E +G
Sbjct: 358 RKVFDWMFHR-DLILCNALISGCS-HGGRHDEALS--LFYELRKEGLG 401


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/742 (37%), Positives = 438/742 (59%), Gaps = 43/742 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G   +A+  + Q  L  G+ PD YTFP +L AC  ++   +G ++H +VLK+
Sbjct: 101 LIRGYASAGLGDQAILLYVQM-LVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKM 159

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D+FV+ SL+H Y   G  ++ RKLFD M  R+  SW ++I+GY     + EA+ + 
Sbjct: 160 GLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLF 219

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV  +P+T+  ++  CA+  ++  G  +  YI + G+E +  + N L++MY K 
Sbjct: 220 FQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKC 279

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           G +  A ++FD+   +++V +N+I++ Y   E ++D +        M Q G +PD +T++
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLV---ILDEMLQKGPRPDKVTML 336

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S  +  AQL D    +S H +++R G    D  I NA++DMY K G   +AC VFE +P 
Sbjct: 337 STIAACAQLGDLSVGKSSHAYVLRNGLEGWDN-ISNAIIDMYMKCGKREAACKVFEHMPN 395

Query: 295 KDVISWNTLITGYAQNG-------------------------------LASEAIEVFQMM 323
           K V++WN+LI G  ++G                               +  EAIE+F+ M
Sbjct: 396 KTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREM 455

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    I  ++ T V I  A  ++GAL     +   + KN +  D+ + T LVDM+ +CG 
Sbjct: 456 QN-QGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
              AM +F ++ +     W A I    + G  + A+  F +ML++ V+PD + FV+LLTA
Sbjct: 515 PSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTA 574

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH G V +G++ F  M++  GI+PH+ HYGCMVDL GRAG L  A + IQ+MP+ P+  
Sbjct: 575 CSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDV 634

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           +WG+LL ACR H N+EL   A+++L ++  E VG +VL+SNIYA+ GKW  V  VR   +
Sbjct: 635 VWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMK 694

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           ++G++K PG SSIEV   +  F +G+ +H +   I   L  +  ++   GYVPD + VL 
Sbjct: 695 EKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLL 754

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DV+E EKEH+L+ HSE+LA+A+G+I++    PI++ KNLR+C DCH++ K +S++  REI
Sbjct: 755 DVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREI 814

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
            VRD+NR+H FK+G CSC DYW
Sbjct: 815 TVRDNNRYHFFKEGFCSCRDYW 836



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 263/529 (49%), Gaps = 51/529 (9%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGF-------EWDVFVAASLLHMYCRFGLANVARKLF--D 87
           +L  C+ L + K++HC ++K G          +  +A+S+          + AR  F  D
Sbjct: 31  LLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSV--QIGTLESLDYARNAFGDD 88

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
           D  +     +N +I GY  +G   +A+ +  +M + G+  D  T   +L  C++   +  
Sbjct: 89  DGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSE 148

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G+ +H  ++K GLE ++FVSN+LI+ YA+ G +    ++FD M+ER+VVSW S+I  Y  
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
            +    A   F  M +AG++P+ +T+V + S  A+L D    + V  +I   G  +  ++
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIM 268

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + NA+VDMY K G I +A  +F+    K+++ +NT+++ Y  +  AS+ + +   M +  
Sbjct: 269 V-NALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKG 327

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
              P++ T +S + A + +G L  G   HA V++N L     ++  ++DMY KCG+ + A
Sbjct: 328 P-RPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAA 386

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGD------------------------------- 416
             +F  +P  + V WN++I+  G+   GD                               
Sbjct: 387 CKVFEHMPNKTVVTWNSLIA--GLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSM 444

Query: 417 --KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +A+  FR+M ++G+  D +T V + +AC + G + +  ++     E+  I   L+   
Sbjct: 445 FEEAIELFREMQNQGIPGDRVTMVGIASACGYLGAL-DLAKWVCTYIEKNDIHVDLQLGT 503

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
            +VD+F R G    A +  + M  R D S W A +G   + GN E GA+
Sbjct: 504 ALVDMFSRCGDPSSAMHVFKRMEKR-DVSAWTAAIGVMAMEGNTE-GAI 550


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/703 (38%), Positives = 413/703 (58%), Gaps = 8/703 (1%)

Query: 9   GRLSEAVDCFYQFTL-TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
           G L E+ + F +  +      PD  T   VL  C    ++  G  +H   +KLG   ++ 
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           V  SL+ MY +    + A+ LFD    ++  SWN+MI GY +  +      +L +M+ E 
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTED 300

Query: 125 VSM--DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             M  D  T+ ++LPVC     + S   +H Y  +HGL+ N  V+N  I  Y + G +  
Sbjct: 301 AKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCS 360

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           + RVFD M  + V SWN+++  Y Q++DP  A   +  M  +G+ PD  T+ SL    ++
Sbjct: 361 SERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           +        +HGF +R G  + D  IG +++ +Y   G   +A  +F+G+  + ++SWN 
Sbjct: 421 MKSLHYGEEIHGFALRNGLAV-DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I GY+QNGL  EAI +F+ M   + I P +   + +  A S + ALR G ++H   +K 
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLS-DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 538

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L  D+FV++ ++DMY K G I  +  +F ++       WN II+ +GIHG+G +AL  F
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 598

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +ML  G++PD  TF  +L ACSH+GLV +G  YF+ M     I+P L+HY C+VD+ GR
Sbjct: 599 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 658

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG +  A   I+ MP  PD+ IW +LL +CRIHGN+ LG   +++L E++ E    YVL+
Sbjct: 659 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLI 718

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SN++A  GKW+ V  VR   +D GL+K  G S IEV  KV  F  G+   P+ E++ +  
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETW 778

Query: 603 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
           R L  K+ S+GY PD   VL D+EE++K  IL  HSE+LAI+FG++++    P++++KNL
Sbjct: 779 RRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNL 838

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R+CGDCHN  KFIS++  R+I+VRD+ RFHHF+DGICSCGDYW
Sbjct: 839 RICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  269 bits (688), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/527 (30%), Positives = 279/527 (52%), Gaps = 19/527 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y R     +A+  F +    +  +PD +T P V+KAC  L+D   G+ IH    K+
Sbjct: 71  IVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKM 130

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVFV  +L+ MY + GL   A K+F+ MP R+  SWN++I G+ ++G   E+ +  
Sbjct: 131 DLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAF 190

Query: 118 DEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            EM +  E    D  T+ ++LPVCA  ++I  G+ +H   VK GL   L V+N+LI+MY+
Sbjct: 191 REMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYS 250

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ--QAGIQPDLLTL 233
           K   +  A  +FD+  ++++VSWNS+I  Y +  D          MQ   A ++ D  T+
Sbjct: 251 KCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTI 310

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           +++  +  + ++ ++ + +HG+  R G    + ++ NA +  Y + G + S+  VF+ + 
Sbjct: 311 LNVLPVCLERSELQSLKELHGYSWRHG-LQSNELVANAFIAAYTRCGALCSSERVFDLMD 369

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K V SWN L+ GYAQN    +A++++  M +   ++P+  T  S+L A S + +L  G 
Sbjct: 370 TKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHYGE 428

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH   ++N L  D F+   L+ +Y  CG+   A  LF  +   S V WN +I+ +  +G
Sbjct: 429 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 488

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH- 472
             D+A+N FRQML +G++P  I  + +  ACS    +  G+   H     F +K HL   
Sbjct: 489 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHC----FALKAHLTED 543

Query: 473 ---YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                 ++D++ + G +G++      +  + D + W  ++    IHG
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIAGYGIHG 589



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 213/418 (50%), Gaps = 9/418 (2%)

Query: 37  VLKACRNLVD---GKKIHCSV-LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           +L+AC    D   G+++H  V     F  D  +   ++ MY   G  + +R +FD +  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLI 151
           +   WNA++S Y ++    +A+ I  E+  +     D  T+  ++  CA   ++  G +I
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H    K  L  ++FV N LI MY K G++  A++VF+ M ER++VSWNSII  + ++   
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 212 ITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
             +   F  M   +    PD+ TLV++  + A   D     +VHG  ++ G   E++++ 
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLG-LNEELMVN 242

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME-ECNE 328
           N+++DMY+K   ++ A  +F+    K+++SWN++I GYA+         + Q M+ E  +
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +  ++ T +++LP       L+   ++H    ++ L  +  VA   +  Y +CG +  + 
Sbjct: 303 MKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSE 362

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
            +F  +   +   WNA++  +  +    KAL+ + QM D G+ PD  T  SLL ACS 
Sbjct: 363 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 4/278 (1%)

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L     Q  D    R +H  +     F  D ++   ++ MY+  G  + +  VF+ L  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++  WN +++ Y +N L  +A+ +F  +    E  P+  T   ++ A + +  L  G  I
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H    K  L  DVFV   L+ MYGKCG +++A+ +F  +P  + V WN+II     +G  
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 416 DKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            ++ N FR+ML  +E   PD  T V++L  C+    + +G    H +  + G+   L   
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGM-AVHGLAVKLGLNEELMVN 242

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
             ++D++ +   L  A         +   S W +++G 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVS-WNSMIGG 279


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 295/759 (38%), Positives = 444/759 (58%), Gaps = 55/759 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I   V+ G L + +  FY      G  PD YTFP VLKAC    +L  G  +H  V   
Sbjct: 98  LIRRSVKLGLLDDTLG-FYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCAN 156

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDM---PVRDSGSWNAMISGYCQSGNAVEAL 114
           G   +VF+  S++ MY R G  + A ++FD++    + D  SWN++++ Y Q G +  AL
Sbjct: 157 GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTAL 216

Query: 115 DILDEMRLE---GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
            I   M       +  D IT+ +ILP CA    +  G  +H + V++GL  ++FV N L+
Sbjct: 217 RIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALV 276

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN-------------------DPI 212
           +MYAK   M  A +VF+ + ++DVVSWN+++  Y Q                     D I
Sbjct: 277 SMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVI 336

Query: 213 T-----------AHGF-----FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           T            HGF     F  MQ  G++P+++TL SL S  A +      +  H ++
Sbjct: 337 TWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYV 396

Query: 257 MRR----GW--FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYA 308
           ++      W    +D+++ N ++DMYAK      A ++F+ +  KD  V++W  +I GYA
Sbjct: 397 IKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456

Query: 309 QNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           Q+G A++A+++F Q+ ++   + PN  T    L A + +G LR G ++HA  ++N    +
Sbjct: 457 QHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESE 516

Query: 368 V-FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           V +V  CL+DMY K G ID A ++F  +   + V W ++++ +G+HG+G++AL+ F QM 
Sbjct: 517 VLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQ 576

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G   D ITF+ +L ACSHSG+V +G  YFH M + FGI P  +HY CMVDL GRAG L
Sbjct: 577 KLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRL 636

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A   I+NM + P A +W ALL A RIH N+ELG  A+ +L E+ +EN G Y L+SN+Y
Sbjct: 637 NEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLY 696

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           AN  +W+ V  +RSL +  G++K PG S I+       F+ G+R+HP+ E+IY+ L +L 
Sbjct: 697 ANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLI 756

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K +GYVP  SF L DV+++EK  +L  HSE+LA+A+GI+++ P  PI+I KNLR+CG
Sbjct: 757 KRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICG 816

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH+   +IS I + EI++RDS+RFHHFK G CSC  YW
Sbjct: 817 DCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 163/549 (29%), Positives = 258/549 (46%), Gaps = 66/549 (12%)

Query: 31  FYTFPP------VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           F T PP      +L+ C+ L++ K  H  +   GF  ++F  A   ++ C  G +  A  
Sbjct: 24  FTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFT-EMFSYAVGAYIEC--GASAEAVS 80

Query: 85  LFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           L   +    S    WNA+I    + G   + L    +M+  G   D  T   +L  C   
Sbjct: 81  LLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEI 140

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWN 199
            ++  G  +H  +  +GL  N+F+ N+++ MY + G +  A ++FD+++ER   D+VSWN
Sbjct: 141 PSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWN 200

Query: 200 SIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SI+AAY Q     TA      M       ++PD +TLV++    A +   ++ + VHGF 
Sbjct: 201 SILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFS 260

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +R G  ++DV +GNA+V MYAK   +N A  VFEG+  KDV+SWN ++TGY+Q G    A
Sbjct: 261 VRNG-LVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 317 IEVFQMMEECN----------------------------------EINPNQGTYVSILPA 342
           + +F+MM+E +                                   + PN  T  S+L  
Sbjct: 320 LSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG 379

Query: 343 YSHVGALRQGIKIHARVIKNCLCF-------DVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            + VGAL  G + HA VIKN L         D+ V   L+DMY KC     A S+F  + 
Sbjct: 380 CASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIE 439

Query: 396 RSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVS 451
                 V W  +I  +  HG+ + AL  F Q+  +   ++P+  T    L AC+  G + 
Sbjct: 440 GKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELR 499

Query: 452 EGQRYFHMMQEEFGIKPHLKHYG-CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            G R  H        +  + + G C++D++ ++G +  A     NM +R   S W +L+ 
Sbjct: 500 LG-RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMT 557

Query: 511 ACRIHGNME 519
              +HG  E
Sbjct: 558 GYGMHGRGE 566


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/714 (38%), Positives = 419/714 (58%), Gaps = 15/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +++ + R G   EA+  +Y+  +  GLRPD   F   +  C   ++L  G+ +H  +L+ 
Sbjct: 29  IVAAFARNGHYREALG-YYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILET 87

Query: 58  GF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E+D+ +  +L+ MY R     +ARK FD+M  +   +WNA+I+GY ++G+   AL I
Sbjct: 88  RLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKI 147

Query: 117 LDEM---RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
             +M     EG+  D IT +S L  C    +I  G  I    V  G   +  V N LINM
Sbjct: 148 YQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINM 207

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y+K G +  A +VFD++  RDV++WN++I+ Y +      A   F  M     +P+++T 
Sbjct: 208 YSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTF 267

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGL 292
           + L +    L D    R++H  +   G +  D++IGN +++MY K    +  A  VFE +
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVREDG-YESDLVIGNVLLNMYTKCSSSLEEARQVFERM 326

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             +DVI+WN LI  Y Q G A +A+++F+ M+  N + PN+ T  ++L A + +GA RQG
Sbjct: 327 RTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN-VAPNEITLSNVLSACAVLGAKRQG 385

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA +       DV +   L++MY +CG +DD + +F  +   S V W+ +I+ +  H
Sbjct: 386 KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQH 445

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G     L  F ++L EG+  D +T VS L+ACSH G++ EG + F  M  + G+ P  +H
Sbjct: 446 GHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRH 505

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           + CMVDL  RAG L  A N I +MP  PDA  W +LL  C++H + +  A  +D+LFE++
Sbjct: 506 FLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELE 565

Query: 533 SENVGYYV-LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           SE+    V L+SN+YA  G+W   D+VR     R  +K PG S IE+N+ V  F  G+++
Sbjct: 566 SEDEHSTVTLLSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKS 622

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ E I  E++ L+ +MK  GYVPD   VL +V+E+EKE +L  HSE+LAIA+G+IS+P
Sbjct: 623 HPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTP 682

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P +P+ I KNLR C DCH   KFIS+I  R+I+VRDS RFHHF++G CSC DYW
Sbjct: 683 PGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 239/457 (52%), Gaps = 13/457 (2%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY + G    A  +F  +   +S SW  +++ + ++G+  EAL     M LEG+  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
               + VC+ S ++  G L+H  I++   LEF++ +   LI MYA+   +  A + FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLNDCR 247
            ++ +V+WN++IA Y ++ D   A   +  M      G++PD +T  S       + D  
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             R +    +  G +  D I+ NA+++MY+K G + SA  VF+ L  +DVI+WNT+I+GY
Sbjct: 181 QGREIEARTVASG-YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           A+ G A++A+E+FQ M   N+  PN  T++ +L A +++  L QG  IH +V ++    D
Sbjct: 240 AKQGAATQALELFQRMGP-NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESD 298

Query: 368 VFVATCLVDMYGKC-GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           + +   L++MY KC   +++A  +F ++     + WN +I  +  +GQ   AL+ F+QM 
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            E V P+ IT  ++L+AC+  G   +G +  H +      K  +     +++++ R G L
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 487 GMAHNFIQNMPVRPDASI--WGALLGACRIHGNMELG 521
               + +       D S+  W  L+ A   HG+   G
Sbjct: 418 ---DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/661 (41%), Positives = 406/661 (61%), Gaps = 8/661 (1%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            + +H   +  G+  D FVA++L  +Y +    + ARK+FD +P  D+  WN +++G   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 107 SGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           S    EAL+    M   G V  D  T+AS L   A + ++  G  +H Y VK GL  +  
Sbjct: 193 S----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V   L+++Y+K G M  A  +FD+M   D+V++N++I+ Y  +    ++   F  +  +G
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
            +P+  TLV++  + +       +R +H F+++      D ++  A+  +Y +L  + SA
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK-ARLDADALVSTALTTLYCRLNDMESA 367

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
            ++F+ +  K + SWN +I+GYAQNGL   A+ +FQ+M+E N + PN  T  S L A +H
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELN-VQPNPITISSTLSACAH 426

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +GAL  G  +H  + K  L  +V+V T L+DMY KCG I +A S+F ++   + V WNA+
Sbjct: 427 LGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAM 486

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           IS +G+HGQG +AL  ++ MLD  + P   TF+S++ ACSH GLV EGQ+ F +M  E+ 
Sbjct: 487 ISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYR 546

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRIHGNMELGAVA 524
           I P ++H  CMVDL GRAG L  A   I   P       +WGALLGAC +H N +L  +A
Sbjct: 547 ITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLA 606

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           S +LFE+DSEN GYYVL+SN+Y +   +     VR  A+ R L KTPG + IE+ ++  +
Sbjct: 607 SQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHV 666

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+  HP+ E IY  L  LTAKM   GY P     L DVEE+EKEH++  HSE+LAIA
Sbjct: 667 FMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIA 726

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG++S+ P + I+I KNLRVC DCHN TKFIS++T+R I+VRD++RFHHF+DG+CSCGDY
Sbjct: 727 FGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDY 786

Query: 705 W 705
           W
Sbjct: 787 W 787



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 253/492 (51%), Gaps = 19/492 (3%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           SEA++ F +      +RPD  T    L+A     ++  G+ +H   +K G      V   
Sbjct: 193 SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG 252

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+ +Y + G  + A+ LFD M   D  ++NA+ISGY  +G    ++++  E+   G   +
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPN 312

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ +++PV +   + L    +H ++VK  L+ +  VS  L  +Y +   M  A  +FD
Sbjct: 313 SSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFD 372

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M+E+ + SWN++I+ Y Q+     A   F  MQ+  +QP+ +T+ S  S  A L     
Sbjct: 373 AMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSL 432

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + VH  I +    + +V +  A++DMYAK G I  A ++F+ +  K+V+SWN +I+GY 
Sbjct: 433 GKWVHRIISKEKLEL-NVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYG 491

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCF 366
            +G  +EA+++++ M +   I P   T++S++ A SH G + +G K+  RV+ N   +  
Sbjct: 492 LHGQGAEALKLYKDMLDA-RILPTSSTFLSVIYACSHGGLVDEGQKVF-RVMTNEYRITP 549

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIISCHGIHGQGDKALNFFRQ 424
            +   TC+VD+ G+ G++++A+ L  + P+S+  P  W A++    +H   D A    ++
Sbjct: 550 GIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQK 609

Query: 425 M--LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
           +  LD      ++   +L T+  H    SE      ++++E   +  +K  GC +   G 
Sbjct: 610 LFELDSENAGYYVLLSNLYTSKKH---YSEAA----VVRQEAKTRKLVKTPGCTLIEIGD 662

Query: 483 AGHLGMAHNFIQ 494
             H+ MA + + 
Sbjct: 663 RPHVFMAGDHLH 674



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 192/378 (50%), Gaps = 9/378 (2%)

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           R ++  +   +H   V  G   + FV++ L  +Y K      A +VFD +   D + WN+
Sbjct: 126 RGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNT 185

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++A    S     A   F  M  AG ++PD  TL S     A+ +     R VHG+ ++ 
Sbjct: 186 LLAGLPGSE----ALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKC 241

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    + ++   ++ +Y+K G ++SA  +F+ +   D++++N LI+GY+ NG+   ++E+
Sbjct: 242 GLAEHEHVV-TGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVEL 300

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ +   +   PN  T V+++P YS  G       +HA V+K  L  D  V+T L  +Y 
Sbjct: 301 FKEL-TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYC 359

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +   ++ A S+F  +   +   WNA+IS +  +G  + A+  F+ M +  V+P+ IT  S
Sbjct: 360 RLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISS 419

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            L+AC+H G +S G ++ H +  +  ++ ++     ++D++ + G +  A +    M  +
Sbjct: 420 TLSACAHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK 478

Query: 500 PDASIWGALLGACRIHGN 517
              S W A++    +HG 
Sbjct: 479 NVVS-WNAMISGYGLHGQ 495


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/739 (37%), Positives = 430/739 (58%), Gaps = 37/739 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  +  CG   +A+  F Q  +  G  PD +TFP VL AC     L +G ++H +++K+
Sbjct: 110 LIRGFSACGLGYKAIVVFRQL-MCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKM 168

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D+FV  SL+H Y   G  +  R++FD M  R+  SW ++I GY + G   EA+ + 
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G+  + +T+  ++  CA+  ++  G  +   I +  LE N  + N L++MY K 
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKC 288

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++FD+ +++++V +N+I++ Y +             M + G +PD +T++S  
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE------- 290
           S  ++L+D    +  HG+++R G    D +  NA+++MY K G    AC VF+       
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVC-NAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 291 ------------------------GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                                    +P  D++SWNT+I    Q  +  EAIE+F++M+  
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQS- 466

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I  ++ T V +  A  ++GAL     IH  + K  + FD+ + T LVDM+ +CG    
Sbjct: 467 EGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQS 526

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           AM +F ++ +     W A I    + G G  A+  F +ML +G++PD + FV+LLTA SH
Sbjct: 527 AMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSH 586

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            GLV +G   F  M++ +GI P   HYGCMVDL GRAG L  A + I +M + P+  IWG
Sbjct: 587 GGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWG 646

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           +LL ACR+H N+++ A A++R+ E+D E  G +VL+SNIYA+ G+W+ V +VR   +++G
Sbjct: 647 SLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKG 706

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
             K PG SSIE+N K+  F TG+ +HP+   I   L+ +  +++ +GYVPD + VL DV 
Sbjct: 707 AHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVN 766

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E EKE++L+ HSE+LAIAF +IS+    PI++ KNLR+C DCH++ K +S+   REIIVR
Sbjct: 767 EKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVR 826

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D+NRFH F+ G CSCGDYW
Sbjct: 827 DNNRFHFFQQGFCSCGDYW 845



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/523 (26%), Positives = 239/523 (45%), Gaps = 51/523 (9%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL------ANVARKLFDDMPV 91
            K C+ + + K++H  + K G         +L+      G       A  A +LF    +
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELF----I 95

Query: 92  RDSG------SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            D+G       ++++I G+   G   +A+ +  ++   G   D  T   +L  C +S  +
Sbjct: 96  EDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAAL 155

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  IVK G E ++FV N+LI+ Y + G +    RVFD+M ER+VVSW S+I  Y
Sbjct: 156 TEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGY 215

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            +      A   F  M + GI+P+ +T+V + S  A+L D +    V   I      +  
Sbjct: 216 AKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNA 275

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +++ NA+VDMY K G I+ A  +F+    K+++ +NT+++ Y + GLA E + V   M +
Sbjct: 276 LMV-NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLK 334

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-- 383
            +   P++ T +S + A S +  +  G   H  V++N L     V   +++MY KCG+  
Sbjct: 335 -HGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393

Query: 384 -----------------------------IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
                                        ++ A  +F  +P S  V WN +I        
Sbjct: 394 MACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESM 453

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +A+  FR M  EG+  D +T V + +AC + G + +  ++ H   ++  I   +    
Sbjct: 454 FKEAIELFRVMQSEGITADKVTMVGVASACGYLGAL-DLAKWIHGYIKKKDIHFDMHLGT 512

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +VD+F R G    A      M V+ D S W A +GA  + GN
Sbjct: 513 ALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 426/708 (60%), Gaps = 8/708 (1%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           +S Y+  G+ S  + CF    + S +  D  TF  +L       +L  G+++HC  LKLG
Sbjct: 287 LSEYLHSGQYSALLKCFADM-VESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG 345

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            +  + V+ SL++MYC+      AR +FD+M  RD  SWN++I+G  Q+G  VEA+ +  
Sbjct: 346 LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFM 405

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++   G+  D  T+ S+L   +     LS    +H++ +K     + FVS  LI+ Y++ 
Sbjct: 406 QLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRN 465

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M+ A  +F++    D+V+WN+++A Y QS+D       F  M + G + D  TL ++ 
Sbjct: 466 RCMKEAEILFERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L      + VH + ++ G+ + D+ + + ++DMY K G +++A   F+ +PV D 
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDL-DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W T+I+G  +NG    A  VF  M     + P++ T  ++  A S + AL QG +IHA
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHA 642

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K     D FV T LVDMY KCG IDDA  LF ++   +   WNA++     HG+G +
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F+QM   G++PD +TF+ +L+ACSHSGLVSE  ++   M  ++GIKP ++HY C+ 
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D  GRAG +  A N I++M +   AS++  LL ACR+ G+ E G   + +L E++  +  
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA   KW+ +   R++ +   +KK PG+S IEV NK+ IF   +R++ + E 
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY +++++   +K  GYVP+  F L DVEE+EKE  L  HSE+LA+AFG++S+PP +PI+
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCHN  K+I+++  REI++RD+NRFH FKDGICSCGDYW
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 146/553 (26%), Positives = 242/553 (43%), Gaps = 82/553 (14%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L+ GK  H  +L      + F+  +L+ MY + G    AR++FD MP RD  SWN++++
Sbjct: 54  DLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILA 113

Query: 103 GYCQSGNAV-----EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
            Y QS   V     +A  +   +R + V    +T++ +L +C  S  + +    H Y  K
Sbjct: 114 AYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACK 173

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GL+ + FV+  L+N+Y KFG ++    +F++M  RDVV WN ++ AY +      A   
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233

Query: 218 FTTMQQAGIQPDLLTLVSLTSI---------VAQLNDCRNSRSVHGFIMRRGWFME---- 264
            +    +G+ P+ +TL  L  I         V    +  ++ SV   I R     E    
Sbjct: 234 SSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHS 293

Query: 265 ------------------------------------DVIIGNAVVDMYAKLG-------- 280
                                                + +G  V  M  KLG        
Sbjct: 294 GQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVS 353

Query: 281 --IINSAC---------AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
             +IN  C          VF+ +  +D+ISWN++I G AQNGL  EA+ +F  +  C  +
Sbjct: 354 NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG-L 412

Query: 330 NPNQGTYVSILPAYSHVG---ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
            P+Q T  S+L A S +    +L + + +HA  I N    D FV+T L+D Y +   + +
Sbjct: 413 KPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINN--VSDSFVSTALIDAYSRNRCMKE 470

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF +      V WNA+++ +     G K L  F  M  +G R D  T  ++   C  
Sbjct: 471 AEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGF 529

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              +++G++  H    + G    L     ++D++ + G +  A     ++PV PD   W 
Sbjct: 530 LFAINQGKQ-VHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWT 587

Query: 507 ALLGACRIHGNME 519
            ++  C  +G  E
Sbjct: 588 TMISGCIENGEEE 600



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 203/420 (48%), Gaps = 6/420 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N  +S Y  SG     L    +M    V  D +T   +L    + D++  G  +H   +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GL+  L VSN+LINMY K      A  VFD M ERD++SWNS+IA   Q+   + A   
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           F  + + G++PD  T+ S+    + L +  + S+ VH   ++    + D  +  A++D Y
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKIN-NVSDSFVSTALIDAY 462

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           ++   +  A  +FE     D+++WN ++ GY Q+    + +++F +M +  E   +  T 
Sbjct: 463 SRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE-RSDDFTL 520

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            ++      + A+ QG ++HA  IK+    D++V++ ++DMY KCG +  A   F  +P 
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V W  +IS    +G+ ++A + F QM   GV PD  T  +L  A S    + +G R 
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG-RQ 639

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    +            +VD++ + G +  A+   + + +  + + W A+L     HG
Sbjct: 640 IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHG 698



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 174/387 (44%), Gaps = 42/387 (10%)

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S +++ G   H  I+        F+ NNLI+MY+K G + +A RVFD+M +RD+VSWNSI
Sbjct: 52  SSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111

Query: 202 IAAYEQSNDPIT-----AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +AAY QS++ +      A   F  ++Q  +    +TL  +  +         S S HG+ 
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
            + G   ++ + G A+V++Y K G +     +FE +P +DV+ WN ++  Y + G   EA
Sbjct: 172 CKIGLDGDEFVAG-ALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 230

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           I++         +NPN+ T + +L   S   +    +K  A                   
Sbjct: 231 IDLSSAFHSSG-LNPNEIT-LRLLARISGDDSDAGQVKSFANG----------------- 271

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
                   +DA S+      S  +  N  +S +   GQ    L  F  M++  V  D +T
Sbjct: 272 --------NDASSV------SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVT 317

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F+ +L        ++ GQ+  H M  + G+   L     +++++ +    G A     NM
Sbjct: 318 FILMLATAVKVDSLALGQQ-VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNM 376

Query: 497 PVRPDASIWGALLGACRIHGNMELGAV 523
             R D   W +++     +G +E+ AV
Sbjct: 377 SER-DLISWNSVIAGIAQNG-LEVEAV 401


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/711 (38%), Positives = 434/711 (61%), Gaps = 14/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL---KACRNLVDGKKIHCSVLKL 57
           +++ Y + G   +A+  F Q  L  G++P+ +TF  VL    A   +  G ++H  V+K 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQL-EGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +  +FV  S+++MY +  + + A+ +FD M  R++ SWN+MI+G+  +G  +EA ++ 
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MRLEGV +     A+++ +CA    +     +H  ++K+G +F+L +   L+  Y+K 
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 178 GMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             +  A ++F  M   ++VVSW +II+ Y Q+     A   F  M++ G++P+  T    
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTY--- 399

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S +   N   +   +H  +++   +     +G A+ D Y+K+G  N A  +FE +  KD
Sbjct: 400 -STILTANAAVSPSQIHALVVKTN-YENSPSVGTALSDSYSKIGDANEAAKIFELIDEKD 457

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPA-YSHVGALRQGIK 354
           +++W+ +++GYAQ G    A+++F Q+ +E   + PN+ T+ S+L A  +   ++ QG +
Sbjct: 458 IVAWSAMLSGYAQMGDIEGAVKIFLQLAKE--GVEPNEFTFSSVLNACAAPTASVEQGKQ 515

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            H+  IK+     + V++ LV MY K G I+ A  +F +      V WN++IS +  HG 
Sbjct: 516 FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGC 575

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G K+L  F +M  + +  D ITF+ +++AC+H+GLV+EGQRYF +M +++ I P ++HY 
Sbjct: 576 GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 635

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL+ RAG L  A + I  MP    A+IW  LL ACR+H N++LG +A+++L  +  +
Sbjct: 636 CMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQ 695

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   YVL+SNIYA  G W+   +VR L   + +KK  G+S IEV NK   F  G+ +HP+
Sbjct: 696 DSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQ 755

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++IY +L  L+ ++K  GY PD  +VL DVEE+ KE IL+ HSERLAIAFG+I++PP +
Sbjct: 756 SDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGT 815

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PIQI KNLRVCGDCH   K IS+I  R+I+VRDSNRFHHFK G CSCGDYW
Sbjct: 816 PIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/517 (30%), Positives = 262/517 (50%), Gaps = 14/517 (2%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R  +  EA++ F      SG   D  +   VLK C  L D   GK++HC  +K GF  
Sbjct: 67  FSRNDQNKEALNLFLGLR-RSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVE 125

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV V  SL+ MY +        ++FD+M V++  SW ++++GY Q+G   +AL +  +M+
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           LEG+  +P T A++L   A    +  G+ +H  ++K GL+  +FV N+++NMY+K  M+ 
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD M  R+ VSWNS+IA +  +   + A   F  M+  G++       ++  + A
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL-PVKDVISW 300
            + +   ++ +H  +++ G    D+ I  A++  Y+K   I+ A  +F  +  V++V+SW
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDF-DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSW 364

Query: 301 NTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
             +I+GY QNG    A+ +F QM  E   + PN  TY +IL A + V       +IHA V
Sbjct: 365 TAIISGYVQNGRTDRAMNLFCQMRRE--GVRPNHFTYSTILTANAAVSP----SQIHALV 418

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K        V T L D Y K G  ++A  +F  +     V W+A++S +   G  + A+
Sbjct: 419 VKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAV 478

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F Q+  EGV P+  TF S+L AC+      E  + FH    + G    L     +V +
Sbjct: 479 KIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTM 538

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + + G++  A+   +   V  D   W +++     HG
Sbjct: 539 YAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHG 574



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 231/443 (52%), Gaps = 10/443 (2%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           +++LFD+ P +     N ++  + ++    EAL++   +R  G   D  +++ +L VC  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             + + G  +H   +K G   ++ V  +L++MY K   +    RVFD+M  ++VVSW S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +A Y Q+     A   F+ MQ  GI+P+  T  ++   +A          VH  +++ G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG- 223

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
               + +GN++V+MY+K  +++ A AVF+ +  ++ +SWN++I G+  NGL  EA E+F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M     +   Q  + +++   +++  +    ++H +VIKN   FD+ + T L+  Y KC
Sbjct: 284 RM-RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 382 GRIDDAMSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
             IDDA  LF  +    + V W AIIS +  +G+ D+A+N F QM  EGVRP+H T+ ++
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTI 402

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           LTA   +  VS  Q +  +++  +   P +     + D + + G    A    + +  + 
Sbjct: 403 LTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELIDEK- 456

Query: 501 DASIWGALLGACRIHGNMELGAV 523
           D   W A+L      G++E GAV
Sbjct: 457 DIVAWSAMLSGYAQMGDIE-GAV 478


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/705 (38%), Positives = 413/705 (58%), Gaps = 5/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  +   GR S+A+  F +  L  G+ PD  T   VL      V    +H   +K G +
Sbjct: 111 MMRAHAAAGRTSDALSLF-RAMLGEGVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLD 167

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
             VFV  +LL  YC+ GL   AR++F +M  +D+ ++NAM+ G  + G   +AL +   M
Sbjct: 168 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 227

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R  G+     T +SIL V A   ++L G  +H  +++     N+FV+N+L++ Y+K   +
Sbjct: 228 RRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCL 287

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
               R+FD+M ERD VS+N IIAAY  +    T    F  MQ+ G    +L   ++ S+ 
Sbjct: 288 DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVA 347

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             L D    + +H  ++  G   ED ++GNA++DMY+K G++++A + F     K  ISW
Sbjct: 348 GSLPDVHIGKQIHAQLVLLGLASED-LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW 406

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             LITGY QNG   EA+++F  M     + P++ T+ SI+ A S +  +  G ++H+ +I
Sbjct: 407 TALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIGLGRQLHSYLI 465

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           ++     VF  + LVDMY KCG +D+A+  F ++P  +S+ WNA+IS +  +G+   A+ 
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F  ML  G  PD +TF+S+L ACSH+GL  E  +YFH+M+ ++ I P  +HY C++D  
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 585

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GR G        +  MP + D  IW ++L +CRIHGN EL  VA+D+LF ++  +   YV
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYV 645

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           ++SNIYA  G+WE    V+ + RDRG++K  G+S +E+  K+  F + + T P  ++I D
Sbjct: 646 ILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKD 705

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           EL  L  +M   GY PD +  L  V+ + K   L  HSERLAIAF ++++P  +PI+I K
Sbjct: 706 ELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMK 765

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NL  C DCH   K IS+I  R+IIVRDS RFHHFKDG+CSCGDYW
Sbjct: 766 NLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 228/463 (49%), Gaps = 19/463 (4%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F    +L  Y   G    A+ LF   P R++ +W  M+  +  +G   +AL +   M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 122 LEGVSMDPITVASI--LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            EGV  D +TV ++  LP C           +H + +K GL+ ++FV N L++ Y K G+
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVF +M ++D V++N+++    +      A   F  M++AGI     T  S+ ++
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A +        VH  ++R    + +V + N+++D Y+K   ++    +F+ +P +D +S
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEEC---NEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +N +I  YA N  A+  + +F+ M++     ++ P    Y ++L     +  +  G +IH
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP----YATMLSVAGSLPDVHIGKQIH 360

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A+++   L  +  +   L+DMY KCG +D A S F      S++ W A+I+ +  +GQ +
Sbjct: 361 AQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 420

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  M   G+RPD  TF S++ A S   ++  G R  H      G K  +     +
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVL 479

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           VD++ + G L  A      MP R   S W A++ A   +G  +
Sbjct: 480 VDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAK 521



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 177/393 (45%), Gaps = 34/393 (8%)

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PIT 213
           +VK G +   +  N  +      G +  A  +FDQM  +++ S N I++AY  S D P  
Sbjct: 34  MVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 214 AHGFFTTMQQ--------------AGIQPDLLTL-------------VSLTSIVAQLNDC 246
            H F ++  +              AG   D L+L             V++T+++  L  C
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-NLPGC 152

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
               S+H F ++ G     V + N ++D Y K G++ +A  VF  +  KD +++N ++ G
Sbjct: 153 -TVPSLHPFAIKFG-LDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            ++ GL ++A+++F  M     I     T+ SIL   + +  L  G ++HA V+++    
Sbjct: 211 CSKEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL 269

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +VFV   L+D Y KC  +DD   LF ++P   +V +N II+ +  +      L  FR+M 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G     + + ++L+       V  G++  H      G+         ++D++ + G L
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDLLGNALIDMYSKCGML 388

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             A +   N   +   S W AL+     +G  E
Sbjct: 389 DAAKSNFSNRSEKSAIS-WTALITGYVQNGQHE 420


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/708 (37%), Positives = 424/708 (59%), Gaps = 7/708 (0%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG 58
           +S Y++ G   EAVDCF    + S +  D  T+  +L    +L     GK+IH +V++ G
Sbjct: 269 LSSYLQAGEGWEAVDCFRDM-IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG 327

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           ++  V VA S ++MY + G  N AR++F  M   D  SWN +ISG  +SG    +L +  
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 119 EMRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++   G+  D  T+ S+L  C+   ++   G  +H   +K G+  + FVS  LI++Y+K 
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG 447

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  +F      D+ SWN+++  +  S++   A   F+ M + G + D +T  +  
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAA 507

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L   +  + +H  +++   F  D+ + + ++DMY K G + SA  VF  +P  D 
Sbjct: 508 KAAGCLVRLQQGKQIHAVVIKMR-FHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDD 566

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W T+I+G  +NG   +A+  +  M     + P++ T+ +++ A S + AL QG +IHA
Sbjct: 567 VAWTTVISGCVENGEEEQALFTYHQMRLAG-VQPDEYTFATLVKACSLLTALEQGKQIHA 625

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++K    FD FV T LVDMY KCG I+DA  LF ++   S   WNA+I     HG  ++
Sbjct: 626 NIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEE 685

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           ALNFF +M   GV PD +TF+ +L+ACSHSGL S+  + F  MQ+ +G++P ++HY C+V
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLV 745

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D   RAGH+  A   + +MP    A+++  LL ACR+ G+ E G   +++LF +D  +  
Sbjct: 746 DALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSA 805

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SNIYA   +WE     R++ +   +KK PG+S I++ NKV +F  G+R+H + + 
Sbjct: 806 AYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDL 865

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+++  +  ++K  GYVPD  F L D+EE++KE  L+ HSE+LAIA+G++ +PP + ++
Sbjct: 866 IYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLR 925

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVCGDCHN  K+IS + +REI++RD+NRFHHF+ GICSCGDYW
Sbjct: 926 VIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 256/521 (49%), Gaps = 32/521 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  YV  G   E +  F  F   SGLRPD  +   +L        GKK   +V +   E
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFH-RSGLRPDCVSVRTILMGV-----GKK---TVFERELE 244

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
                            +   A KLF      D   WN  +S Y Q+G   EA+D   +M
Sbjct: 245 ----------------QVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM 288

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
               V  D +T   IL V A  +++  G  IH  +V+ G +  + V+N+ INMY K G +
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSV 348

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            +A R+F QM E D++SWN++I+   +S     +   F  + ++G+ PD  T+ S+    
Sbjct: 349 NYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRAC 408

Query: 241 AQLNDCR-NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           + L +     R VH   ++ G  + D  +  A++D+Y+K G +  A  +F      D+ S
Sbjct: 409 SSLEESYCVGRQVHTCALKAGIVL-DSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLAS 467

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN ++ G+  +    EA+ +F +M E  E   +Q T+ +   A   +  L+QG +IHA V
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGE-KADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK    +D+FV + ++DMY KCG +  A  +F Q+P    V W  +IS    +G+ ++AL
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVD 478
             + QM   GV+PD  TF +L+ ACS    + +G++ + ++M+      P +     +VD
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVD 644

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           ++ + G++  A+   + M  R  A +W A++     HGN E
Sbjct: 645 MYAKCGNIEDAYGLFRRMNTRSVA-LWNAMIVGLAQHGNAE 684



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/531 (26%), Positives = 244/531 (45%), Gaps = 46/531 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDF-----YTFPPVLKACRNLVDG-----KKI 50
           +++ Y   G L +       F +   LR        +T  P+ K C  L+ G     + +
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLC--LLYGSPSASEAL 144

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
               +K+G +WDVFVA +L+++Y +F     AR LFD MPVRD   WN M+  Y + G  
Sbjct: 145 QGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAG 204

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNN 169
            E L +       G+  D ++V +IL    +       L  +  Y  K      LFV ++
Sbjct: 205 DEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATK------LFVCDD 258

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
                                 + DV  WN  +++Y Q+ +   A   F  M ++ +  D
Sbjct: 259 ----------------------DSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCD 296

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
            LT + + S+VA LN     + +HG ++R GW  + V + N+ ++MY K G +N A  +F
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVRFGW-DQFVSVANSAINMYVKAGSVNYARRMF 355

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GA 348
             +   D+ISWNT+I+G A++GL   ++ +F  +     + P+Q T  S+L A S +  +
Sbjct: 356 GQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL-PDQFTITSVLRACSSLEES 414

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
              G ++H   +K  +  D FV+T L+D+Y K G++++A  LF+         WNA++  
Sbjct: 415 YCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHG 474

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
             +     +AL  F  M + G + D ITF +   A      + +G++  H +  +     
Sbjct: 475 FTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ-IHAVVIKMRFHY 533

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            L     ++D++ + G +  A      +P  PD   W  ++  C  +G  E
Sbjct: 534 DLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 226/502 (45%), Gaps = 40/502 (7%)

Query: 25  SGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           S L P +++      A  +L+ GK+ H  ++  G   D +V  +L+ MY + G    ARK
Sbjct: 10  SSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARK 69

Query: 85  LFDDMPV--RDSGSWNAMISGYCQSG------NAVEALDILDEMRLEGVSMDPITVASIL 136
           LFD  P   RD  ++NA+++ Y  +G         EA  I   +R   +     T++ + 
Sbjct: 70  LFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLF 129

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
            +C    +  +   +  Y VK GL++++FV+  L+N+YAKF  +R A  +FD+M  RDVV
Sbjct: 130 KLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVV 189

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
            WN ++ AY +        G F+   ++G++P                DC + R++   +
Sbjct: 190 LWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP----------------DCVSVRTILMGV 233

Query: 257 MRRGWFMEDVIIGNAVVDMYA-KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
            ++  F  ++      V  YA KL + +            DV  WN  ++ Y Q G   E
Sbjct: 234 GKKTVFEREL----EQVRAYATKLFVCDDD---------SDVTVWNKTLSSYLQAGEGWE 280

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A++ F+ M + + +  +  TY+ IL   + +  L  G +IH  V++      V VA   +
Sbjct: 281 AVDCFRDMIK-SRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAI 339

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           +MY K G ++ A  +F Q+     + WN +IS     G  + +L  F  +L  G+ PD  
Sbjct: 340 NMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQF 399

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T  S+L ACS         R  H    + GI         ++D++ + G +  A     N
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN 459

Query: 496 MPVRPDASIWGALLGACRIHGN 517
                D + W A++    +  N
Sbjct: 460 QD-GFDLASWNAMMHGFTVSDN 480


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/705 (38%), Positives = 413/705 (58%), Gaps = 5/705 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  +   GR S+A+  F +  L  G+ PD  T   VL      V    +H   +K G +
Sbjct: 111 MMRAHAAAGRTSDALSLF-RAMLGEGVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLD 167

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
             VFV  +LL  YC+ GL   AR++F +M  +D+ ++NAM+ G  + G   +AL +   M
Sbjct: 168 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 227

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R  G+     T +SIL V A   ++L G  +H  +++     N+FV+N+L++ Y+K   +
Sbjct: 228 RRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCL 287

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
               R+FD+M ERD VS+N IIAAY  +    T    F  MQ+ G    +L   ++ S+ 
Sbjct: 288 DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVA 347

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             L D    + +H  ++  G   ED ++GNA++DMY+K G++++A + F     K  ISW
Sbjct: 348 GSLPDVHIGKQIHAQLVLLGLASED-LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW 406

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             LITGY QNG   EA+++F  M     + P++ T+ SI+ A S +  +  G ++H+ +I
Sbjct: 407 TALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIGLGRQLHSYLI 465

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           ++     VF  + LVDMY KCG +D+A+  F ++P  +S+ WNA+IS +  +G+   A+ 
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F  ML  G  PD +TF+S+L ACSH+GL  E  +YFH+M+ ++ I P  +HY C++D  
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 585

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GR G        +  MP + D  IW ++L +CRIHGN EL  VA+D+LF ++  +   YV
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYV 645

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           ++SNIYA  G+WE    V+ + RDRG++K  G+S +E+  K+  F + + T P  ++I D
Sbjct: 646 ILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKD 705

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           EL  L  +M   GY PD +  L  V+ + K   L  HSERLAIAF ++++P  +PI+I K
Sbjct: 706 ELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMK 765

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NL  C DCH   K IS+I  R+IIVRDS RFHHFKDG+CSCGDYW
Sbjct: 766 NLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 226/460 (49%), Gaps = 13/460 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F    +L  Y   G    A+ LF   P R++ +W  M+  +  +G   +AL +   M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 122 LEGVSMDPITVASI--LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            EGV  D +TV ++  LP C           +H + +K GL+ ++FV N L++ Y K G+
Sbjct: 133 GEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVF +M ++D V++N+++    +      A   F  M++AGI     T  S+ ++
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A +        VH  ++R    + +V + N+++D Y+K   ++    +F+ +P +D +S
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           +N +I  YA N  A+  + +F+ M++    +     Y ++L     +  +  G +IHA++
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLG-FDRQVLPYATMLSVAGSLPDVHIGKQIHAQL 363

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +   L  +  +   L+DMY KCG +D A S F      S++ W A+I+ +  +GQ ++AL
Sbjct: 364 VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 423

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M   G+RPD  TF S++ A S   ++  G R  H      G K  +     +VD+
Sbjct: 424 QLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDM 482

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           + + G L  A      MP R   S W A++ A   +G  +
Sbjct: 483 YAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAK 521



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 177/393 (45%), Gaps = 34/393 (8%)

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PIT 213
           +VK G +   +  N  +      G +  A  +FDQM  +++ S N I++AY  S D P  
Sbjct: 34  MVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 214 AHGFFTTMQQ--------------AGIQPDLLTL-------------VSLTSIVAQLNDC 246
            H F ++  +              AG   D L+L             V++T+++  L  C
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-NLPGC 152

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
               S+H F ++ G     V + N ++D Y K G++ +A  VF  +  KD +++N ++ G
Sbjct: 153 -TVPSLHPFAIKFG-LDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            ++ GL ++A+++F  M     I     T+ SIL   + +  L  G ++HA V+++    
Sbjct: 211 CSKEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL 269

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +VFV   L+D Y KC  +DD   LF ++P   +V +N II+ +  +      L  FR+M 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G     + + ++L+       V  G++  H      G+         ++D++ + G L
Sbjct: 330 KLGFDRQVLPYATMLSVAGSLPDVHIGKQ-IHAQLVLLGLASEDLLGNALIDMYSKCGML 388

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             A +   N   +   S W AL+     +G  E
Sbjct: 389 DAAKSNFSNRSEKSAIS-WTALITGYVQNGQHE 420


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/658 (41%), Positives = 397/658 (60%), Gaps = 36/658 (5%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           KK+H  +  L    +  +   L+  Y   G   + RK+FD+M  R+   +N MI  Y  +
Sbjct: 38  KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               + L +  EM   G   D  T   +L  C+ S+N+  GLLIH  ++K GL+FNLFV 
Sbjct: 98  HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N LI MY K G +  A RVFD+M+ +DVVSWNS++A Y  +     A      M+  G +
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQK 217

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  T+ SL   VA      N+ S +   + +                            
Sbjct: 218 PDGCTMASLMPAVA------NTSSENVLYVEK---------------------------- 243

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  L  K++ISWN +I  Y +N L ++A++++  ME+C  + P+  T+ S+LPA   + 
Sbjct: 244 IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKC-RVEPDAITFASVLPACGDLS 302

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G +IH  V K  LC ++ +   L+DMY +CG +DDA  +F ++       W ++IS
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+ GQG  A+  F +ML+ G  PD I FV++L+ACSHSGL+ EG+ YF  M +++ I 
Sbjct: 363 AYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRIT 422

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++HY C+VDL GRAG +  A+N I+ MP+ P+  +W  LL +CR+  NM++G +A+D 
Sbjct: 423 PRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADN 482

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L ++  E  GYYVL+SNIYA  G+W+ V E+RS+ + + ++KTPG S++E+NN+V  F  
Sbjct: 483 LLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLA 542

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+ +HP+ ++IY+EL  L AKMK LGYVP+    L DVEE++KE  L  HSE+LAI F +
Sbjct: 543 GDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFAL 602

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +++  +  I+I KNLRVCGDCH   K IS+I EREIIVRD+NRFHHFKDG+CSCGDYW
Sbjct: 603 LNT-QEYQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 210/415 (50%), Gaps = 47/415 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  YV   R  + +  F +  +  G RPD YT+P VLKAC    NL  G  IH  VLK+
Sbjct: 90  MIRSYVNNHRYDDGLLVFREM-VNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKV 148

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G ++++FV   L+ MY + G    AR++FD+M  +D  SWN+M++GY  +    +AL+I 
Sbjct: 149 GLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEIC 208

Query: 118 DEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            EM   G   D  T+AS++P  A   S+N+L                             
Sbjct: 209 REMEDYGQKPDGCTMASLMPAVANTSSENVL----------------------------- 239

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
                 +  ++F  +  ++++SWN +I  Y +++ P  A   +  M++  ++PD +T  S
Sbjct: 240 ------YVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFAS 293

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +      L+     R +H ++ ++     ++++ N+++DMYA+ G ++ A  VF+ +  +
Sbjct: 294 VLPACGDLSALLLGRRIHEYVEKKK-LCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR 352

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV SW +LI+ Y   G    A+ +F  M    +  P+   +V+IL A SH G L +G +I
Sbjct: 353 DVASWTSLISAYGMTGQGCNAVALFTEMLNSGQA-PDSIAFVAILSACSHSGLLDEG-RI 410

Query: 356 HARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           + + + +       +    CLVD+ G+ GR+D+A ++  Q+P   +   W  ++S
Sbjct: 411 YFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLS 465


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/621 (43%), Positives = 398/621 (64%), Gaps = 9/621 (1%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D  SWN++I+   +SG++ EAL     MR   +     +    +  C+   +I SG   H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
                 G + ++FVS+ LI MY+  G +  A +VFD++ +RD+VSW S+I  Y+ + + +
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 213 TAHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            A   F  +          +  D + LVS+ S  +++     + S+H F+++RG F   V
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG-FDRGV 218

Query: 267 IIGNAVVDMYAKLGIINSACA--VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
            +GN ++D YAK G    A A  +F+ +  KD +S+N++++ YAQ+G+++EA EVF+ + 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   +  N  T  ++L A SH GALR G  IH +VI+  L  DV V T ++DMY KCGR+
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + A   F ++   +   W A+I+ +G+HG   KAL  F  M+D GVRP++ITFVS+L AC
Sbjct: 339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH+GL  EG R+F+ M+  FG++P L+HYGCMVDL GRAG L  A++ IQ M ++PD+ I
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           W +LL ACRIH N+EL  ++  RLFE+DS N GYY+L+S+IYA+ G+W+ V+ VR + ++
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           RGL K PG+S +E+N +V +F  G+  HP+ EKIY+ L  L  K+   GYV + S V  D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           V+E+EKE  L  HSE+LAIAFGI+++ P S + + KNLRVC DCHN  K IS+I +RE +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD+ RFHHFKDG CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 232/426 (54%), Gaps = 17/426 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G  +EA+  F      S L P   +FP  +KAC +L D   GK+ H      
Sbjct: 47  VIADLARSGDSAEALLAFSSMRKLS-LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVF 105

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ D+FV+++L+ MY   G    ARK+FD++P RD  SW +MI GY  +GNA++A+ + 
Sbjct: 106 GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 118 DEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
            ++ +      + + +D + + S++  C+R         IH +++K G +  + V N L+
Sbjct: 166 KDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 172 NMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQP 228
           + YAK G   +  A ++FDQ++++D VS+NSI++ Y QS     A   F  + +   +  
Sbjct: 226 DAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTF 285

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           + +TL ++   V+     R  + +H  ++R G   +DVI+G +++DMY K G + +A   
Sbjct: 286 NAITLSTVLLAVSHSGALRIGKCIHDQVIRMG-LEDDVIVGTSIIDMYCKCGRVETARKA 344

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ +  K+V SW  +I GY  +G A++A+E+F  M +   + PN  T+VS+L A SH G 
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGL 403

Query: 349 LRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
             +G +  +A   +  +   +    C+VD+ G+ G +  A  L  ++  +  S+ W++++
Sbjct: 404 HVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL 463

Query: 407 SCHGIH 412
           +   IH
Sbjct: 464 AACRIH 469


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/701 (39%), Positives = 426/701 (60%), Gaps = 17/701 (2%)

Query: 14   AVDCFYQFTLTSGLRPDF--YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
            A++CF      +GL  D+   T   VL A     D   GK++H   +K G + DV VA S
Sbjct: 888  AIECFVNM---NGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANS 944

Query: 69   LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
            L++MY + G A  AR++F+DM   D  SWN+MIS   QS    E++++  ++  EG+  D
Sbjct: 945  LVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPD 1004

Query: 129  PITVASILPVCARSDNILSGL----LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
              T+AS+L  C+   +++ GL     IH++ +K G   + FV+  LI++Y+K G M  A 
Sbjct: 1005 HFTLASVLRACS---SLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 185  RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
             +F    + D+  WN+++  Y   ND   A   F+ + ++G + D +TL +       L 
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 245  DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                 + +H   ++ G F  D+ + + ++DMY K G + +A  VF  +   D ++W ++I
Sbjct: 1122 LLDQGKQIHAHAIKAG-FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 1180

Query: 305  TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            +G   NG   +A+ ++  M + + + P++ T+ +++ A S V AL QG ++HA VIK   
Sbjct: 1181 SGCVDNGNEDQALRIYHRMRQ-SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC 1239

Query: 365  CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
              D FV T LVDMY KCG I+DA  LF ++   +   WNA++     HG  ++A+N F+ 
Sbjct: 1240 VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKS 1299

Query: 425  MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
            M   G+ PD ++F+ +L+ACSH+GL SE   Y H M  ++GI+P ++HY C+VD  GRAG
Sbjct: 1300 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 1359

Query: 485  HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
             +  A   I+ MP +  ASI  ALLGACRI G++E G   + RLF ++  +   YVL+SN
Sbjct: 1360 LVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSN 1419

Query: 545  IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
            IYA   +W+ V + R + + + +KK PG+S I+V N + +F   +R+HP+ + IYD++  
Sbjct: 1420 IYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEE 1479

Query: 605  LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
            +   ++  GYVPD  FVL DVE++EKE  L  HSE+LAIA+G+IS+P  + I++ KNLRV
Sbjct: 1480 MMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRV 1539

Query: 665  CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            CGDCHN  K+IS++ EREI++RD+NRFHHF+DG+CSCGDYW
Sbjct: 1540 CGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 230/477 (48%), Gaps = 37/477 (7%)

Query: 40   ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
            +  NL+ GK  H  ++  G   D F++ +LL MY + G  + AR++FD  P RD  +WNA
Sbjct: 633  STHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA 692

Query: 100  MISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            ++  Y  S     GNA E L +   +R    S   +T+A +L +C  S  + +   +H Y
Sbjct: 693  ILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGY 752

Query: 155  IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
             +K GLE+++FVS  L+N+Y+K G MR A  +FD M ERDVV WN ++  Y Q      A
Sbjct: 753  AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEA 812

Query: 215  HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
               F+   ++G++PD  ++  + + V+++N               G ++ D +   A   
Sbjct: 813  FQLFSEFHRSGLRPDEFSVQLILNGVSEVN------------WDEGKWLADQVQAYA--- 857

Query: 275  MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
              AKL + +            DV  WN  ++     G    AIE F  M   N I+ +  
Sbjct: 858  --AKLSLSDDN---------PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLN-IDYDAV 905

Query: 335  TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
            T + +L A +    L  G ++H   +K+ L  DV VA  LV+MY K G    A  +F  +
Sbjct: 906  TLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDM 965

Query: 395  PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH--SGLVSE 452
                 + WN++IS        ++++N F  +L EG++PDH T  S+L ACS    GL   
Sbjct: 966  KHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNIS 1025

Query: 453  GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             Q + H ++   G          ++D++ ++G +  A    QN     D + W A++
Sbjct: 1026 RQIHVHALKT--GNIADSFVATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 11/219 (5%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L     + N+L G   H  IV  G   + F+SNNL+ MY+K G +  A +VFD   ERD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 195 VVSWNSIIAAYE---QSNDPITAHG--FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           +V+WN+I+ AY     SND     G   F  ++ +      +TL  +  +         +
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 250 RSVHGFIMRRG--WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             VHG+ ++ G  W   DV +  A+V++Y+K G +  A  +F+ +  +DV+ WN ++ GY
Sbjct: 747 EGVHGYAIKIGLEW---DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 803

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            Q GL  EA ++F        + P++ +   IL   S V
Sbjct: 804 VQLGLEKEAFQLFSEFHRSG-LRPDEFSVQLILNGVSEV 841


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/679 (40%), Positives = 408/679 (60%), Gaps = 7/679 (1%)

Query: 32  YTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           +  P VLKAC  +     GK+IH  VLK G + DVFV  +L+ MY        AR +FD 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           M  RD  SW+ MI    ++     AL+++ EM    V    + + S++ + A + N+  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 149 LLIHLYIVKHGLEFNLFV--SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
             +H Y++++    ++ V  +  L++MYAK G +  A ++F+ + ++ VVSW ++IA   
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +SN        F  MQ+  I P+ +T++SL          +  + +H +I+R G F   +
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNG-FSVSL 333

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +  A+VDMY K   I +A A+F+    +DV+ W  +++ YAQ     +A  +F  M   
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P + T VS+L   +  GAL  G  +H+ + K  +  D  + T LVDMY KCG I+ 
Sbjct: 394 G-VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 452

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF +        WNAII+   +HG G++AL+ F +M  +GV+P+ ITF+ LL ACSH
Sbjct: 453 AGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +GLV+EG++ F  M   FG+ P ++HYGCMVDL GRAG L  AH  I++MP++P+  +WG
Sbjct: 513 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 572

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           AL+ ACR+H N +LG +A+ +L E++ EN GY VLMSNIYA   +W     VR   +  G
Sbjct: 573 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 632

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +KK PG S IEVN  V  F  G+++HP+  +I + L  +  K+   GYVPD S VL +++
Sbjct: 633 MKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNID 692

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  LT HSE+LA+AFG+IS+ P +PI+I KNLRVC DCH  TK +S+I  R IIVR
Sbjct: 693 EEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVR 752

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHF++G CSCGDYW
Sbjct: 753 DRNRFHHFREGYCSCGDYW 771


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/744 (38%), Positives = 439/744 (59%), Gaps = 59/744 (7%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI---HCSVLKLGFEWDVFVAASLLHMYC 74
            Y+   + G  PD YTFP V KAC NL         H +V + GF  +VFV  +++ MY 
Sbjct: 246 LYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYG 305

Query: 75  RFGLANVARKLFDDM---PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPI 130
           + G    A  +FDD+    ++D  SWN+++S Y  + +A  AL +  +M    + S D I
Sbjct: 306 KCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVI 365

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           ++ +ILP CA     L G  +H + ++ GL  ++FV N +++MYAK G M  A +VF +M
Sbjct: 366 SLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRM 425

Query: 191 MERDVVSWNSIIAAYEQSN-------------------DPIT----------------AH 215
             +DVVSWN+++  Y Q+                    D +T                A 
Sbjct: 426 KFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEAL 485

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM----------ED 265
             F  M   G +P+++TLVSL S    +    + +  H + ++   F+          +D
Sbjct: 486 DVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIK---FILNLDGPDPGADD 542

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMM 323
           + + N ++DMYAK      A  +F+ +  KD  V++W  +I GYAQ+G A+ A+++F  M
Sbjct: 543 LKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGM 602

Query: 324 EECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKC 381
            + ++ I PN  T    L A + + ALR G ++HA V++N      +FVA CL+DMY K 
Sbjct: 603 FKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKS 662

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +D A  +F  +P+ ++V W ++++ +G+HG+G+ AL  F +M    + PD ITF+ +L
Sbjct: 663 GDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSG+V  G  +F+ M ++FG+ P  +HY CMVDL+GRAG LG A   I  MP+ P 
Sbjct: 723 YACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPT 782

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +W ALL ACR+H N+ELG  A++RL E++S N G Y L+SNIYAN  +W+ V  +R  
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYT 842

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +  G+KK PG S I+    V  FY G+R+HP+ ++IY+ L +L  ++K++GYVP  SF 
Sbjct: 843 MKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFA 902

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DV+++EK  +L  HSE+LA+A+GI++  P++PI+I KNLR+CGDCH+   +IS+I E 
Sbjct: 903 LHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEH 962

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EII+RDS+RFHHFK+G CSC  YW
Sbjct: 963 EIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 180/626 (28%), Positives = 283/626 (45%), Gaps = 64/626 (10%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFP-PVLKACRNLVDGKKIHCSVLKLGFE 60
           IS+ +RC  +   +    QFT T  L     T P   LK C +L   K +H   +  G  
Sbjct: 134 ISMLLRCFPIKSKL-LQSQFTNTRLL--SCATIPITALKECNSLAHAKLLHQQSIMQGLL 190

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILD 118
           + +  A +L+  Y        A  L + +P   S    WN +I      G+  +   +  
Sbjct: 191 FHL--ATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYR 248

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M+  G + D  T   +   CA   ++  G  +H  + + G   N+FV N +++MY K G
Sbjct: 249 QMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG 308

Query: 179 MMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI-QPDLLTLV 234
            +RHA  +FD +  R   D+VSWNS+++AY  ++D  TA   F  M    +  PD+++LV
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLV 368

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++    A L      R VHGF +R G  ++DV +GNAVVDMYAK G +  A  VF+ +  
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSG-LVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKF 427

Query: 295 KDVISWNTL-----------------------------------ITGYAQNGLASEAIEV 319
           KDV+SWN +                                   ITGYAQ G   EA++V
Sbjct: 428 KDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDV 487

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF--------DVFVA 371
           F+ M +C    PN  T VS+L A   VGAL  G + H   IK  L          D+ V 
Sbjct: 488 FRQMCDCGS-RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVI 546

Query: 372 TCLVDMYGKCGRIDDAMSLFYQV-PRSSS-VPWNAIISCHGIHGQGDKALNFFRQM--LD 427
             L+DMY KC   + A  +F  V P+    V W  +I  +  HG  + AL  F  M  +D
Sbjct: 547 NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMD 606

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           + ++P+  T    L AC+    +  G++    +   F     L    C++D++ ++G + 
Sbjct: 607 KSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVD 666

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLMSNI 545
            A     NMP R +A  W +L+    +HG  E      D + +V    + + + V++   
Sbjct: 667 TAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYAC 725

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTP 571
             +     G++    +++D G+   P
Sbjct: 726 SHSGMVDHGINFFNRMSKDFGVDPGP 751



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 224/467 (47%), Gaps = 59/467 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S Y+     + A+  F++ T    + PD  +   +L AC +L   + G+++H   ++ 
Sbjct: 334 VVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS 393

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +++ MY + G    A K+F  M  +D  SWNAM++GY Q+G    AL + 
Sbjct: 394 GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLF 453

Query: 118 DEMRLEGVSMD-----------------------------------PITVASILPVCARS 142
           + M  E + +D                                    +T+ S+L  C   
Sbjct: 454 ERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSV 513

Query: 143 DNILSGLLIHLYIVKHGLEF--------NLFVSNNLINMYAKFGMMRHALRVFDQM--ME 192
             +L G   H Y +K  L          +L V N LI+MYAK      A ++FD +   +
Sbjct: 514 GALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKD 573

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           RDVV+W  +I  Y Q  D   A   F+ M      I+P+  TL       A+L   R  R
Sbjct: 574 RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGR 633

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VH +++R  +    + + N ++DMY+K G +++A  VF+ +P ++ +SW +L+TGY  +
Sbjct: 634 QVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMH 693

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   +A+ VF  M +   + P+  T++ +L A SH G +  GI    R+ K+   F V  
Sbjct: 694 GRGEDALRVFDEMRKVPLV-PDGITFLVVLYACSHSGMVDHGINFFNRMSKD---FGVDP 749

Query: 371 A----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
                 C+VD++G+ GR+ +AM L  ++P   + V W A++S   +H
Sbjct: 750 GPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLH 796


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/746 (38%), Positives = 435/746 (58%), Gaps = 44/746 (5%)

Query: 1   MISVYVRCGRLSEA-------------------VDCF------YQFTLT------SGLRP 29
           +IS+Y +CG+  +A                   V CF      ++  LT      +G  P
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 30  DFYTFPPVLKACRN---LVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANV--AR 83
           + Y F    +AC     +  G  I   V+K G+ + DV V   L+ M+ + G  ++  A 
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAF 225

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           K+F+ MP R++ +W  MI+   Q G A EA+D+  EM L G   D  T++ ++  CA  +
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERDVVSWNS 200
            +L G  +H   ++HGL  +  V   LINMYAK    G M  A ++FDQ+++ +V SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 201 IIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +I  Y Q       A   F  M    + P+  T  S     A L   R    V    ++ 
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F     + N+++ MYA+ G I+ A   F+ L  K++IS+NT+I  YA+N  + EA+E+
Sbjct: 406 G-FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALEL 464

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  +E+   +  +  T+ S+L   + +G + +G +IHARVIK+ L  +  V   L+ MY 
Sbjct: 465 FNEIED-QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYS 523

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +CG I+ A  +F  +   + + W +II+    HG   +AL  F +ML+EGVRP+ +T+++
Sbjct: 524 RCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIA 583

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L+ACSH GLV+EG ++F  M  E G+ P ++HY CMVD+ GR+G L  A  FI +MP +
Sbjct: 584 VLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK 643

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
            DA +W   LGACR+HGN+ELG  A+  + E +  +   Y+L+SN+YA+  KW+ V  +R
Sbjct: 644 ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIR 703

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              +++ L K  G S +EV NKV  FY G+ +HPK  +IYDEL+NL+ K+K LGYVP+  
Sbjct: 704 KAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLD 763

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
           FVL DVEE++KE +L  HSE++A+AFG+IS+    PI++FKNLR+CGDCH+  K+IS  T
Sbjct: 764 FVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMAT 823

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            REIIVRD+NRFHH KDG CSC +YW
Sbjct: 824 GREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 195/390 (50%), Gaps = 16/390 (4%)

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +G   +A+  L+ M  +G   D  T +  L  C R+ +   G L+H  + +  L+ +   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 167 SNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
            N+LI++Y+K G    A  +F  M   RD++SW+++++ +  +N    A   F  M + G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK-LGIINS 284
             P+     + T   +         S+ GF+++ G+   DV +G  ++DM+ K  G + S
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VFE +P ++ ++W  +IT   Q G A EAI++F  M   +   P++ T   ++ A +
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEM-ILSGYEPDRFTLSGVISACA 282

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC---GRIDDAMSLFYQVPRSSSVP 401
           ++  L  G ++H++ I++ L  D  V  CL++MY KC   G +  A  +F Q+   +   
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 402 WNAIISCHGIHGQGD-KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           W A+I+ +   G  D +AL+ FR M+   V P+H TF S L AC++   +  G++ F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF--- 399

Query: 461 QEEFGIKPHLKHYGC----MVDLFGRAGHL 486
                +K       C    ++ ++ R+G +
Sbjct: 400 --THAVKLGFSSVNCVANSLISMYARSGRI 427


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/713 (39%), Positives = 417/713 (58%), Gaps = 39/713 (5%)

Query: 29  PDFYTFPPV--LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARK 84
           P     PP+  +K C+++   K+IH   +  G   +  V A ++   C+  L ++  AR 
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARM 74

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FD MP  +   WN MI GY + G    A+ +  EM   GV  D  T   +L    R   
Sbjct: 75  VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +  G  +H +IVK G   N+FV N LI++Y+  G +  A  VFD+  + DVV+WN +I+ 
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y +S     +   F  M++  + P  +TLVS+ S  ++L D    + VH ++  +   +E
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV--KDLKIE 252

Query: 265 DV-IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA---QNGLA------- 313
            V ++ NA++DMYA  G +++A  +F+ +  +DVISW  ++TG+    Q GLA       
Sbjct: 253 PVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKM 312

Query: 314 ---------------------SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
                                 E + +F+ M+  N I P++ T VSIL A +H+GAL  G
Sbjct: 313 PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAAN-IKPDEFTMVSILTACAHLGALELG 371

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             I A + KN +  D FV   L+DMY  CG ++ A+ +F  +P    + W A+I    I+
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAIN 431

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G++AL+ F QML   + PD +T + +L AC+HSG+V +G+++F  M  + GI+P++ H
Sbjct: 432 GYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAH 491

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           YGCMVDL GRAGHL  AH  I+NMPV+P++ +WG+LLGACR+H + E+  +A+ ++ E++
Sbjct: 492 YGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELE 551

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            EN   YVL+ NIYA   +WE + EVR L  DRG+KKTPG S IE+N  V  F  G++ H
Sbjct: 552 PENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVH 611

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ ++IY +L  ++  +K  GY PD S V  D+ E+EKE  +  HSE+LAIAFG+ISS P
Sbjct: 612 PQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGP 671

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              I+I KNLR+C DCH   K +S++  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 672 GVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/545 (29%), Positives = 263/545 (48%), Gaps = 63/545 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           MI  Y R G  + AV  + +  L  G+ PD YT+P +LK  R   D     G+++H  ++
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEM-LERGVMPDEYTYPFLLK--RFTRDTAVKCGRELHDHIV 146

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           KLGF  +VFV  +L+H+Y   G  +VAR +FD     D  +WN MISGY +S    E++ 
Sbjct: 147 KLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMK 206

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           + DEM    V    IT+ S+L  C++  ++  G  +H Y+    +E    + N LI+MYA
Sbjct: 207 LFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYA 266

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIA-------------------------------A 204
             G M  AL +FD M  RDV+SW +I+                                 
Sbjct: 267 ACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDG 326

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y Q N        F  MQ A I+PD  T+VS+ +  A L        +  +I  +     
Sbjct: 327 YLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI-DKNEIKI 385

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D  +GNA++DMY   G +  A  +F  +P +D ISW  +I G A NG   EA+++F  M 
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQML 445

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGR 383
           + + I P++ T + +L A +H G + +G K  AR+  ++ +  +V    C+VD+ G+ G 
Sbjct: 446 KAS-ITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGH 504

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFV 438
           + +A  +   +P + +S+ W +++    +H   + A    +Q+L+  + P+    ++   
Sbjct: 505 LKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILE--LEPENGAVYVLLC 562

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMP 497
           ++  AC+    + E ++   MM    GIK   K  GC ++++ G        H F+    
Sbjct: 563 NIYAACNRWEKLHEVRKL--MMDR--GIK---KTPGCSLIEMNGS------VHEFVAGDQ 609

Query: 498 VRPDA 502
           V P +
Sbjct: 610 VHPQS 614


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/741 (37%), Positives = 426/741 (57%), Gaps = 41/741 (5%)

Query: 3   SVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF 59
           S YV CG   + ++ F +  L  G++PD  T   +L AC +L D   GK IH   LK G 
Sbjct: 215 SCYVNCGFPQKGLNVFREMVL-DGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGM 273

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
             +VFV+ +L+++Y        A+ +FD MP R+  +WN++ S Y   G   + L++  E
Sbjct: 274 VENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFRE 333

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M L GV  DP+ ++SILP C++  ++ SG  IH + VKHG+  ++FV   L+N+YA    
Sbjct: 334 MGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLC 393

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +R A  VFD M  R+VV+WNS+ + Y     P      F  M   G++PDL+T++S+   
Sbjct: 394 VREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHA 453

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            + L D ++ + +HGF +R G  +EDV + NA++ +YAK   +  A  VF+ +P ++V S
Sbjct: 454 CSDLQDLKSGKVIHGFAVRHG-MVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVAS 512

Query: 300 WNTLITGY-----------------------------------AQNGLASEAIEVFQMME 324
           WN ++T Y                                    +N    EA+E+F+ M+
Sbjct: 513 WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ 572

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
                 P++ T  SIL A S    LR G +IH  V ++   +D+     LVDMY KCG +
Sbjct: 573 TMG-FKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGL 631

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
             + ++F  +P      WN +I  +G+HG G +AL+ F +ML   V+PD  TF  +L+AC
Sbjct: 632 SLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSAC 691

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHS LV EG + F+ M  +  ++P  +HY C+VD++ RAG L  A+ FIQ MP+ P A  
Sbjct: 692 SHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIA 751

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           W A L  CR++ N+EL  +++ +LFE+D      YV + NI      W    ++R L ++
Sbjct: 752 WKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKE 811

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           RG+ KTPG S   V N+V  F  G++++ + +KIY+ L  L AK+K+ GY PD  +VL D
Sbjct: 812 RGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHD 871

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           ++++EK   L +HSE+LA+AFGI++   +S I++FKNLR+CGDCHN  K++S +    I+
Sbjct: 872 IDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIV 931

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRDS RFHHFK+G CSC D+W
Sbjct: 932 VRDSLRFHHFKNGNCSCKDFW 952



 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 294/563 (52%), Gaps = 20/563 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G  +EA+   Y  +   G++PD   F  V KAC   R+ +  K+ H    + G   DV +
Sbjct: 19  GLPNEAIK-IYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             + +H Y +      AR++FDD+  RD  +WN++ + Y   G   + L++  +M L  V
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +P+TV+SILP C+   ++ SG  IH ++V+HG+  ++FVS+  +N YAK   +R A  
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VFD M  RDVV+WNS+ + Y     P      F  M   G++PD +T+  + S  + L D
Sbjct: 198 VFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQD 257

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            ++ +++HGF ++ G  +E+V + NA+V++Y     +  A AVF+ +P ++VI+WN+L +
Sbjct: 258 LKSGKAIHGFALKHG-MVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLAS 316

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y   G   + + VF+ M   N + P+     SILPA S +  L+ G  IH   +K+ + 
Sbjct: 317 CYVNCGFPQKGLNVFREM-GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV 375

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DVFV T LV++Y  C  + +A ++F  +P  + V WN++ SC+   G   K LN FR+M
Sbjct: 376 EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM 435

Query: 426 LDEGVRPDHITFVSLLTACS-----HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
           +  GV+PD +T +S+L ACS      SG V  G    H M E+  +         ++ L+
Sbjct: 436 VLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFV------CNALLSLY 489

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF--EVDSENVGY 538
            +   +  A      +P R  AS W  +L A   +   E G     ++   EV ++ + +
Sbjct: 490 AKCVCVREAQVVFDLIPHREVAS-WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITW 548

Query: 539 YVLMSNIYANVGKWEGVDEVRSL 561
            V++     N    E ++  R +
Sbjct: 549 SVVIGGCVKNSRIEEAMEIFRKM 571



 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 173/602 (28%), Positives = 300/602 (49%), Gaps = 45/602 (7%)

Query: 3   SVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF 59
           + YV CG   + ++ F +  L   ++ +  T   +L  C +L D   GK+IH  V++ G 
Sbjct: 114 ACYVNCGFPQQGLNVFRKMGLNK-VKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGM 172

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
             DVFV+++ ++ Y +      A+ +FD MP RD  +WN++ S Y   G   + L++  E
Sbjct: 173 VEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFRE 232

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M L+GV  DP+TV+ IL  C+   ++ SG  IH + +KHG+  N+FVSN L+N+Y     
Sbjct: 233 MVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC 292

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +R A  VFD M  R+V++WNS+ + Y     P      F  M   G++PD + + S+   
Sbjct: 293 VREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPA 352

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            +QL D ++ +++HGF ++ G  +EDV +  A+V++YA    +  A  VF+ +P ++V++
Sbjct: 353 CSQLKDLKSGKTIHGFAVKHG-MVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVT 411

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN+L + Y   G   + + VF+ M   N + P+  T +SIL A S +  L+ G  IH   
Sbjct: 412 WNSLSSCYVNCGFPQKGLNVFREM-VLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFA 470

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +++ +  DVFV   L+ +Y KC  + +A  +F  +P      WN I++ +  + + +K L
Sbjct: 471 VRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGL 530

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP----------- 468
             F QM  + V+ D IT+  ++  C  +  + E    F  MQ   G KP           
Sbjct: 531 YMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ-TMGFKPDETTIYSILRA 589

Query: 469 ------------------------HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
                                    L     +VD++ + G L ++ N    MP++ D   
Sbjct: 590 CSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFS 648

Query: 505 WGALLGACRIHGNMELGAVASDRLF--EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           W  ++ A  +HGN +      +++    V  ++  +  ++S    ++   EGV    S++
Sbjct: 649 WNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMS 708

Query: 563 RD 564
           RD
Sbjct: 709 RD 710


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/708 (37%), Positives = 423/708 (59%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +++ + + G   + ++ F + T  S +    +T   VLK C N   L  G+ +H   +++
Sbjct: 301  LLNGFAQMGDAEKVLNLFCRMT-GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRI 359

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G E D F++  L+ MY + GLA  A K+F  +   D  SW+A+I+   Q G + EA ++ 
Sbjct: 360  GCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVF 419

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              MR  GV  +  T+AS++       ++  G  IH  + K+G E++  V N L+ MY K 
Sbjct: 420  KRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKI 479

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G ++   RVF+    RD++SWN++++ +  +    T    F  M   G  P++ T +S+ 
Sbjct: 480  GSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISIL 539

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
               + L+D    + VH  I++      D  +G A+VDMYAK   +  A  +F  L  +D+
Sbjct: 540  RSCSSLSDVDLGKQVHAQIVKNSLDGND-FVGTALVDMYAKNRFLEDAETIFNRLIKRDL 598

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
             +W  ++ GYAQ+G   +A++ F  M+    + PN+ T  S L   S +  L  G ++H+
Sbjct: 599  FAWTVIVAGYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGRQLHS 657

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
              IK     D+FVA+ LVDMY KCG ++DA  +F  +    +V WN II  +  HGQG K
Sbjct: 658  MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 717

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL  F  MLDEG  PD +TF+ +L+ACSH GL+ EG+++F+ + + +GI P ++HY CMV
Sbjct: 718  ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 777

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            D+ GRAG      +FI+ M +  +  IW  +LGAC++HGN+E G  A+ +LFE++ E   
Sbjct: 778  DILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDS 837

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             Y+L+SN++A  G W+ V  VR+L   RG+KK PG S +EVN +V +F + + +HPK  +
Sbjct: 838  NYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIRE 897

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I+ +L++L  K+ S+GY P+   VL +V + EK+ +L  HSERLA+AF ++S+  +  I+
Sbjct: 898  IHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIR 957

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            IFKNLR+CGDCH++ K IS+IT +E++VRD N FHHFK+G CSC ++W
Sbjct: 958  IFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 218/425 (51%), Gaps = 5/425 (1%)

Query: 34  FPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L+ C    +L +GK IH  V+K G   D  +  SL+++Y + G AN A K+F ++P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  SW A+I+G+   G    A+++  EMR EGV  +  T A+ L  C+   ++  G  
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H   +K G   +LFV + L+++YAK G M  A RVF  M +++ VSWN+++  + Q  D
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
                  F  M  + I     TL ++    A   + R  + VH   +R G  + D  I  
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL-DEFISC 369

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            +VDMY+K G+   A  VF  +   DV+SW+ +IT   Q G + EA EVF+ M     I 
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI- 428

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PNQ T  S++ A + +G L  G  IHA V K    +D  V   LV MY K G + D   +
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F        + WNA++S    +   D  L  F QML EG  P+  TF+S+L +CS    V
Sbjct: 489 FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 548

Query: 451 SEGQR 455
             G++
Sbjct: 549 DLGKQ 553



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 195/377 (51%), Gaps = 4/377 (1%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           + +L  CA   ++  G  IH  ++K G+  +  + N+L+N+YAK G   +A +VF ++ E
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           RDVVSW ++I  +        A   F  M++ G++ +  T  +     +   D    + V
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H   ++ G F  D+ +G+A+VD+YAK G +  A  VF  +P ++ +SWN L+ G+AQ G 
Sbjct: 252 HAEAIKVGDF-SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           A + + +F  M   +EIN ++ T  ++L   ++ G LR G  +H+  I+     D F++ 
Sbjct: 311 AEKVLNLFCRMTG-SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISC 369

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
           CLVDMY KCG   DA+ +F ++     V W+AII+C    GQ  +A   F++M   GV P
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP 429

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           +  T  SL++A +  G +  G+   H    ++G +        +V ++ + G +      
Sbjct: 430 NQFTLASLVSAATDLGDLYYGES-IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 493 IQNMPVRPDASIWGALL 509
            +    R D   W ALL
Sbjct: 489 FEATTNR-DLISWNALL 504



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y  +L   +  G L +G  IH +VIK+ +  D  +   LV++Y KCG  + A  +F ++P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               V W A+I+     G G  A+N F +M  EGV  +  T+ + L ACS   L  E  +
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMC-LDLEFGK 249

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
             H    + G    L     +VDL+ + G + +A      MP + +A  W ALL      
Sbjct: 250 QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGFAQM 308

Query: 516 GNME 519
           G+ E
Sbjct: 309 GDAE 312


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/621 (43%), Positives = 398/621 (64%), Gaps = 9/621 (1%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D  SWN++I+   +SG++ EAL     MR   +     +    +  C+   +I SG   H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
                 G + ++FVS+ LI MY+  G +  A +VFD++ +R++VSW S+I  Y+ + + +
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 213 TAHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            A   F  +          +  D + LVS+ S  +++     + S+H F+++RG F   V
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG-FDRGV 218

Query: 267 IIGNAVVDMYAKLGIINSACA--VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
            +GN ++D YAK G    A A  +F+ +  KD +S+N++++ YAQ+G+++EA EVF+ + 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   +  N  T  ++L A SH GALR G  IH +VI+  L  DV V T ++DMY KCGR+
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + A   F ++   +   W A+I+ +G+HG   KAL  F  M+D GVRP++ITFVS+L AC
Sbjct: 339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH+GL  EG R+F+ M+  FG++P L+HYGCMVDL GRAG L  A++ IQ M ++PD+ I
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           W +LL ACRIH N+EL  ++  RLFE+DS N GYY+L+S+IYA+ G+W+ V+ VR + ++
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           RGL K PG+S +E+N +V +F  G+  HP+ EKIY+ L  L  K+   GYV + S V  D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           V+E+EKE  L  HSE+LAIAFGI+++ P S + + KNLRVC DCHN  K IS+I +RE +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD+ RFHHFKDG CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/426 (30%), Positives = 232/426 (54%), Gaps = 17/426 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G  +EA+  F      S L P   +FP  +KAC +L D   GK+ H      
Sbjct: 47  VIADLARSGDSAEALLAFSSMRKLS-LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVF 105

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ D+FV+++L+ MY   G    ARK+FD++P R+  SW +MI GY  +GNA++A+ + 
Sbjct: 106 GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 118 DEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
            ++ +      + + +D + + S++  C+R         IH +++K G +  + V N L+
Sbjct: 166 KDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 172 NMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQP 228
           + YAK G   +  A ++FDQ++++D VS+NSI++ Y QS     A   F  + +   +  
Sbjct: 226 DAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTF 285

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           + +TL ++   V+     R  + +H  ++R G   +DVI+G +++DMY K G + +A   
Sbjct: 286 NAITLSTVLLAVSHSGALRIGKCIHDQVIRMG-LEDDVIVGTSIIDMYCKCGRVETARKA 344

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ +  K+V SW  +I GY  +G A++A+E+F  M +   + PN  T+VS+L A SH G 
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGL 403

Query: 349 LRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
             +G +  +A   +  +   +    C+VD+ G+ G +  A  L  ++  +  S+ W++++
Sbjct: 404 HVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL 463

Query: 407 SCHGIH 412
           +   IH
Sbjct: 464 AACRIH 469


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/684 (38%), Positives = 429/684 (62%), Gaps = 8/684 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           SG+  D + +  ++ +  +    K+IH  +L LG ++  F+   L+H    FG    AR+
Sbjct: 16  SGIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQ 74

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FDD+P      WNA+I GY ++ +  +AL +   M+L  VS D  T   +L  C+   +
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD--QMMERDVVSWNSII 202
           +  G  +H  + + G + ++FV N LI +YAK   +  A  VF+   + ER +VSW +I+
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           +AY Q+ +P+ A   F+ M++  ++PD + LVS+ +    L D +  RS+H  +++ G  
Sbjct: 195 SAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 263 ME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           +E D++I  ++  MYAK G + +A  +F+ +   ++I WN +I+GYA+NG A EAI++F 
Sbjct: 255 IEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M    ++ P+  +  S + A + VG+L Q   ++  V ++    DVF+++ L+DM+ KC
Sbjct: 313 EMIN-KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G ++ A  +F +      V W+A+I  +G+HG+  +A++ +R M   GV P+ +TF+ LL
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            AC+HSG+V EG  +F++M +   I P  +HY C++DL GRAGHL  A+  I+ MPV+P 
Sbjct: 432 MACNHSGMVREGWWFFNLMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPG 490

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            ++WGALL AC+ H ++ELG  A+ +LF +D  N G+YV +SN+YA    W+ V EVR  
Sbjct: 491 VTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVR 550

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +++GL K  G S +EV  +++ F  G+++HP+YE+I  ++  + +++K  G+V +K   
Sbjct: 551 MKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDAS 610

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D+ ++E E  L SHSER+AIA+G+IS+P  +P++I KNLR C +CH  TK IS++ +R
Sbjct: 611 LHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDR 670

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 671 EIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 5/208 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y + G   EA+D F++  +   +RPD  +    + AC    +L   + ++  V + 
Sbjct: 294 MISGYAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVF++++L+ M+ + G    AR +FD    RD   W+AMI GY   G A EA+ + 
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV  + +T   +L  C  S  +  G      +  H +         +I++  + 
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRA 472

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAA 204
           G +  A  V   M ++  V  W ++++A
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/743 (38%), Positives = 430/743 (57%), Gaps = 51/743 (6%)

Query: 14  AVDCFYQFTLTSGLR--PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
           A  C Y F L   L   PD YTFP V KAC  +     G+  H   L  GF  +VFV  +
Sbjct: 108 ANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNA 167

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSM 127
           L+ MY R    + ARK+FD+M V D  SWN++I  Y + G    AL++   M  E G   
Sbjct: 168 LVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRP 227

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D IT+ ++LP CA       G  +H + V   +  N+FV N L++MYAK GMM  A  VF
Sbjct: 228 DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVF 287

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ------------------------ 223
             M  +DVVSWN+++A Y Q      A   F  MQ+                        
Sbjct: 288 SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGY 347

Query: 224 -----------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI------MRRGWFMEDV 266
                      +GI+P+ +TL+S+ S  A +    + + +H +       +R+    ++ 
Sbjct: 348 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDEN 407

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITGYAQNGLASEAIEVF-QMM 323
           ++ N ++DMYAK   +++A A+F+ L  K  DV++W  +I GY+Q+G A++A+E+  +M 
Sbjct: 408 MVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKCG 382
           EE  +  PN  T    L A + + ALR G +IHA  ++N      +FV+ CL+DMY KCG
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 527

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            I DA  +F  +   + V W ++++ +G+HG G++AL  F +M   G + D +T + +L 
Sbjct: 528 SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLY 587

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSHSG++ +G  YF+ M+  FG+ P  +HY C+VDL GRAG L  A   I+ MP+ P  
Sbjct: 588 ACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPP 647

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
            +W A L  CRIHG +ELG  A++++ E+ S + G Y L+SN+YAN G+W+ V  +RSL 
Sbjct: 648 VVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLM 707

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           R +G+KK PG S +E       F+ G++THP  ++IY  L +   ++K +GYVP+  F L
Sbjct: 708 RHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFAL 767

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DV+++EK+ +L  HSE+LA+A+GI+++P  + I+I KNLRVCGDCH    ++S+I + +
Sbjct: 768 HDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHD 827

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           II+RDS+RFHHFK+G CSC  YW
Sbjct: 828 IILRDSSRFHHFKNGSCSCKGYW 850



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 256/551 (46%), Gaps = 55/551 (9%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           + + +L S   P+    PP +  C+ +   K IH  +L  G    + + + L+  Y   G
Sbjct: 17  YIKVSLFSTSAPEIT--PPFIHKCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVG 73

Query: 78  LANVARKLFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
             + A  L    P  D+G   WN++I  Y  +G A + L +   M     + D  T   +
Sbjct: 74  CLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFV 133

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
              C    ++  G   H   +  G   N+FV N L+ MY++   +  A +VFD+M   DV
Sbjct: 134 FKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDV 193

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VSWNSII +Y +   P  A   F+ M  + G +PD +TLV++    A L      + +H 
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHC 253

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           F +     ++++ +GN +VDMYAK G+++ A  VF  + VKDV+SWN ++ GY+Q G   
Sbjct: 254 FAVTSE-MIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312

Query: 315 EAIEVFQMMEE-----------------------------CNE-----INPNQGTYVSIL 340
           +A+ +F+ M+E                             C +     I PN+ T +S+L
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVL 372

Query: 341 PAYSHVGALRQGIKIHARVI-------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
              + VGAL  G +IH   I       KN    +  V   L+DMY KC ++D A ++F  
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDS 432

Query: 394 V-PRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGL 449
           + P+    V W  +I  +  HG  +KAL    +M +E    RP+  T    L AC+    
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +  G++ + + ++ +    P L    C++D++ + G +  A     NM  + + + W +L
Sbjct: 493 LRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSL 550

Query: 509 LGACRIHGNME 519
           +    +HG  E
Sbjct: 551 MTGYGMHGYGE 561



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 218/468 (46%), Gaps = 58/468 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y + G+   A++ F + T   G RPD  T   VL  C +L     GK++HC  +  
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               ++FV   L+ MY + G+ + A  +F +M V+D  SWNAM++GY Q G   +A+ + 
Sbjct: 259 EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLF 318

Query: 118 DEMRLEGVSMD-----------------------------------PITVASILPVCARS 142
           ++M+ E + MD                                    +T+ S+L  CA  
Sbjct: 319 EKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASV 378

Query: 143 DNILSGLLIHLYIVKHGLEFNL-------FVSNNLINMYAKFGMMRHALRVFDQM--MER 193
             ++ G  IH Y +K+ ++           V N LI+MYAK   +  A  +FD +   ER
Sbjct: 379 GALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER 438

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ--PDLLTLVSLTSIVAQLNDCRNSRS 251
           DVV+W  +I  Y Q  D   A    + M +   Q  P+  T+       A L   R  + 
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQ 498

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H + +R       + + N ++DMYAK G I+ A  VF+ +  K+ ++W +L+TGY  +G
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHG 558

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +F  M        +  T + +L A SH G + QG++   R+      F V   
Sbjct: 559 YGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKT---VFGVSPG 614

Query: 372 ----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
                CLVD+ G+ GR++ A+ L  ++P     V W A +SC  IHG+
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGK 662



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 179/380 (47%), Gaps = 35/380 (9%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL- 57
           IS Y + G   EA+    Q  L+SG++P+  T   VL  C +   L+ GK+IHC  +K  
Sbjct: 337 ISGYAQRGLGYEALGVCRQM-LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP 395

Query: 58  ------GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGN 109
                 G   +  V   L+ MY +    + AR +FD +    RD  +W  MI GY Q G+
Sbjct: 396 IDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455

Query: 110 AVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFV 166
           A +AL++L EM  E     P   T++  L  CA    +  G  IH Y +++      LFV
Sbjct: 456 ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFV 515

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           SN LI+MYAK G +  A  VFD MM ++ V+W S++  Y        A G F  M++ G 
Sbjct: 516 SNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGF 575

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFI--MRRGWFMEDVIIG----NAVVDMYAKLG 280
           + D +TL+ +      L  C +S  +   +    R   +  V  G      +VD+  + G
Sbjct: 576 KLDGVTLLVV------LYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629

Query: 281 IINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQ-GTYV 337
            +N+A  + E +P++   + W   ++    +G     +E+ +   E+  E+  N  G+Y 
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHG----KVELGEYAAEKITELASNHDGSYT 685

Query: 338 SILPAYSHVGALRQGIKIHA 357
            +   Y++ G  +   +I +
Sbjct: 686 LLSNLYANAGRWKDVTRIRS 705



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 272 VVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           ++  Y  +G ++ A ++    P  D  V  WN+LI  Y  NG A++ + +F +M   +  
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS-W 123

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T+  +  A   + ++R G   HA  +      +VFV   LV MY +C  + DA  
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSG 448
           +F ++     V WN+II  +   G+   AL  F +M +E G RPD+IT V++L  C+  G
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
             S G++  H       +  ++    C+VD++ + G +  A+    NM V+ D   W A+
Sbjct: 244 THSLGKQ-LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAM 301

Query: 509 LGACRIHGNMELGAVASDRLFE 530
           +      G  E       RLFE
Sbjct: 302 VAGYSQIGRFEDAV----RLFE 319


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 282/707 (39%), Positives = 420/707 (59%), Gaps = 11/707 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++  Y + G   EA+D  Y   L  G++PD YTFP VL+ C    NLV G++IH  V++ 
Sbjct: 178 LVGGYAKAGLFDEALD-LYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRY 236

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV V  +L+ MY + G  N AR +FD MP RD  SWNAMISGY ++G  +E L + 
Sbjct: 237 GFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLF 296

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V  D +T+ S++  C    +   G  IH Y+++     +  + N+LI MY+  
Sbjct: 297 GMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSV 356

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A  VF +   RD+VSW ++I+ YE    P  A   +  M+  GI PD +T+  + 
Sbjct: 357 GLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVL 416

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  + L +     ++H    ++G  +   I+ N+++DMYAK   I+ A  +F     K++
Sbjct: 417 SACSCLCNLDMGMNLHEVAKQKG-LVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNI 475

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I G   N    EA+  F+  E    + PN  T V +L A + +GAL  G +IHA
Sbjct: 476 VSWTSIILGLRINNRCFEALFFFR--EMIRRLKPNSVTLVCVLSACARIGALTCGKEIHA 533

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  + FD F+   ++DMY +CGR++ A   F+ V    +  WN +++ +   G+G  
Sbjct: 534 HALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVT-SWNILLTGYAERGKGAH 592

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A   F++M++  V P+ +TF+S+L ACS SG+V+EG  YF+ M+ ++ I P+LKHY C+V
Sbjct: 593 ATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVV 652

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G L  A+ FIQ MP++PD ++WGALL +CRIH ++ELG +A++ +F+ D+ +VG
Sbjct: 653 DLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVG 712

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L+SN+YA+ GKW+ V EVR + R  GL   PG S +EV   V  F + +  HP+ ++
Sbjct: 713 YYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKE 772

Query: 598 IYDELRNLTAKMKSLGYV-PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           I   L     KMK  G   P+ S +  D+ E  K  I   HSERLAI FG+I+S P  PI
Sbjct: 773 INALLERFYKKMKEAGVEGPESSHM--DIMEASKADIFCGHSERLAIVFGLINSGPGMPI 830

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
            + KNL +C  CHN  KFIS+   REI VRD+ +FHHFK GICSC D
Sbjct: 831 WVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 242/469 (51%), Gaps = 9/469 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +LL M+ RFG    A  +F  M  R+  SWN ++ GY ++G   EALD+   M   GV  
Sbjct: 146 ALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKP 205

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    N++ G  IH++++++G E ++ V N LI MY K G +  A  VF
Sbjct: 206 DVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVF 265

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D+M  RD +SWN++I+ Y ++   +     F  M +  + PDL+T+ S+ +    L D R
Sbjct: 266 DKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDR 325

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             R +HG+++R   F  D  I N+++ MY+ +G+I  A  VF     +D++SW  +I+GY
Sbjct: 326 LGRQIHGYVLRTE-FGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
               +  +A+E ++MM E   I P++ T   +L A S +  L  G+ +H    +  L   
Sbjct: 385 ENCLMPQKALETYKMM-EAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSY 443

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             VA  L+DMY KC  ID A+ +F+     + V W +II    I+ +  +AL FFR+M+ 
Sbjct: 444 SIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR 503

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             ++P+ +T V +L+AC+  G ++ G+   H      G+         ++D++ R G   
Sbjct: 504 R-LKPNSVTLVCVLSACARIGALTCGKE-IHAHALRTGVSFDGFMPNAILDMYVRCGR-- 559

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           M + + Q   V  + + W  LL      G    GA A++    +   NV
Sbjct: 560 MEYAWKQFFSVDHEVTSWNILLTGYAERGK---GAHATELFQRMVESNV 605



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 177/348 (50%), Gaps = 2/348 (0%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N+ I   C  GN   A+  LD M    + ++     +++ +C        G  ++ Y+  
Sbjct: 75  NSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSI 134

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
                +L + N L++M+ +FG +  A  VF +M +R++ SWN ++  Y ++     A   
Sbjct: 135 SMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDL 194

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M   G++PD+ T   +      + +    R +H  ++R G F  DV + NA++ MY 
Sbjct: 195 YHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYG-FESDVDVVNALITMYV 253

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G +N+A  VF+ +P +D ISWN +I+GY +NG+  E + +F MM +   ++P+  T  
Sbjct: 254 KCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIK-YPVDPDLMTMT 312

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S++ A   +G  R G +IH  V++     D  +   L+ MY   G I++A ++F +    
Sbjct: 313 SVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECR 372

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
             V W A+IS +       KAL  ++ M  EG+ PD IT   +L+ACS
Sbjct: 373 DLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACS 420


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/621 (42%), Positives = 403/621 (64%), Gaps = 12/621 (1%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWN++I+ + +SG++++AL     MR   +  +  T    +  C+   ++ +G  IH   
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQA 112

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
              G   ++FV++ LI+MY+K G +  A ++FD++ ER+VVSW S+I+ Y Q+     A 
Sbjct: 113 FVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAV 172

Query: 216 GFFTT-----------MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
             F             +   G+  D + L  + S  A++     +  VHG  +++G F  
Sbjct: 173 FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKG-FEG 231

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
            + +GN ++D YAK G I+ +  VF+G+   DV SWN+LI  YAQNGL+ EA  +F  M 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +  E+  N  T  ++L A +H GAL+ G  IH +V+K  L  ++ V T +VDMY KCGR+
Sbjct: 292 KRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRV 351

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + A   F ++ R +   W  +++ +G+HG G +A+  F +M+  G++P++ITFVS+L AC
Sbjct: 352 EMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAAC 411

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH+GL+ EG  +F+ M+ EF ++P ++HY CMVDL GRAG+L  A+  IQ M V+PD  +
Sbjct: 412 SHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIV 471

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WG+LLGACRIH N+ELG +++ +LF++D  N GYYVL+SNIYA+ G+W+ V+ +R L ++
Sbjct: 472 WGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKN 531

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
            GL KTPG+S +E   +V +F  G++ HP++EKIY+ L  L  K++ +GY+P+ + VL D
Sbjct: 532 HGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYD 591

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           V+ +EK  +L  HSE+LA+AFGI++S P S IQI KNLR+CGDCH   K IS+I  REI+
Sbjct: 592 VDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIV 651

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RDS RFHHFKDG+CSCGDYW
Sbjct: 652 IRDSKRFHHFKDGLCSCGDYW 672



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 228/432 (52%), Gaps = 26/432 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ + R G   +A+  F      S L P+  TFP  +K+C +L D   GK+IH      
Sbjct: 57  IIADFARSGDSLQALYAFSSMRKLS-LHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVF 115

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  D+FVA++L+ MY + G  N ARKLFD++P R+  SW +MISGY Q+  A EA+ + 
Sbjct: 116 GYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLF 175

Query: 118 -----------DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
                      DE+   GV +D + +  ++  CAR         +H   VK G E  L V
Sbjct: 176 KEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAV 235

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG- 225
            N L++ YAK G +  + +VFD M E DV SWNS+IA Y Q+   + A   F+ M + G 
Sbjct: 236 GNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGE 295

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++ + +TL ++    A     +  + +H  +++     +++++G ++VDMY K G +  A
Sbjct: 296 VRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKME-LEDNLVVGTSIVDMYCKCGRVEMA 354

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              F+ L  K+V SW  ++ GY  +G   EA++VF  M  C  I PN  T+VS+L A SH
Sbjct: 355 RKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCG-IKPNYITFVSVLAACSH 413

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            G L++G     ++   C  FDV       +C+VD+ G+ G + +A  L  ++  +   +
Sbjct: 414 AGLLKEGWHWFNKM--KCE-FDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFI 470

Query: 401 PWNAIISCHGIH 412
            W +++    IH
Sbjct: 471 VWGSLLGACRIH 482



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 166/336 (49%), Gaps = 18/336 (5%)

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH- 253
           V SWNSIIA + +S D + A   F++M++  + P+  T        + L D    + +H 
Sbjct: 51  VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110

Query: 254 -GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
             F+   G    D+ + +A++DMY+K G +N A  +F+ +P ++V+SW ++I+GY QN  
Sbjct: 111 QAFVFGYG---SDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNER 167

Query: 313 ASEAIEVFQ---MMEEC--NEINPNQGTYVSILPAYSHVGALRQGIK-----IHARVIKN 362
           A EA+ +F+   +++E   +EI        S+L         R  +K     +H   +K 
Sbjct: 168 AREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKK 227

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
                + V   L+D Y KCG I  +  +F  +  +    WN++I+ +  +G   +A + F
Sbjct: 228 GFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLF 287

Query: 423 RQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
             M+  G VR + +T  ++L AC+HSG +  G +  H    +  ++ +L     +VD++ 
Sbjct: 288 SDMVKRGEVRYNAVTLSAVLLACAHSGALQIG-KCIHDQVVKMELEDNLVVGTSIVDMYC 346

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + G + MA      +  R +   W  ++    +HG+
Sbjct: 347 KCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGH 381


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 417/711 (58%), Gaps = 11/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-----KKIHCSVL 55
           MI    + GR  EA   F Q     G  P+  T+  +L A      G     K++H    
Sbjct: 203 MIGGLAQHGRGQEAFSLFLQME-RGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAG 261

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           K GF  D+ V  +L+HMY + G  + AR +FD M  RD  SWNAMI G  Q+G   EA  
Sbjct: 262 KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFT 321

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           I  +M+ EG   D  T  S+L     +        +H + V+ GL  +L V +  ++MY 
Sbjct: 322 IFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYI 381

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G +  A  +FD++  R+V +WN++I    Q      A   F  M++ G  PD  T V+
Sbjct: 382 RCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVN 441

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S           + VH + +  G  + D+ +GNA+V MYAK G    A  VF+ +  +
Sbjct: 442 ILSANVGEEALEWVKEVHSYAIDAG--LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVER 499

Query: 296 DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +V +W  +I+G AQ+G   EA  +F QM+ E   I P+  TYVSIL A +  GAL    +
Sbjct: 500 NVTTWTVMISGLAQHGCGHEAFSLFLQMLREG--IVPDATTYVSILSACASTGALEWVKE 557

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H+  +   L  D+ V   LV MY KCG +DDA  +F  +       W  +I     HG+
Sbjct: 558 VHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGR 617

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G  AL+ F +M  EG +P+  +FV++L+ACSH+GLV EG+R F  + +++GI+P ++HY 
Sbjct: 618 GLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYT 677

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAG L  A +FI NMP+ P  + WGALLGAC  +GN+E+   A+    ++  +
Sbjct: 678 CMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 737

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   YVL+SNIYA  G WE    VRS+ + RG++K PG S IEV+N++  F  G+ +HP+
Sbjct: 738 SASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPE 797

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++IY +L++L  ++K+ GYVPD   VL++ +++ KE  L SHSE+LAI +G++ +P ++
Sbjct: 798 SKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRN 857

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI+++KNLRVC DCH  TKFIS++T REI+ RD+ RFHHFKDG+CSCGDYW
Sbjct: 858 PIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 189/608 (31%), Positives = 296/608 (48%), Gaps = 17/608 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y   G   +A+  + Q     G +P+  T+  +LKAC + V    GKKIH  +++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV V  +L++MY + G  + A+ +FD M  R+  SW  MI G    G   EA    
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG   +  T  SIL   A +  +     +H + V  GL  +L V N L++MYAK 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL- 236
           G +  A  VFD M+ERD+ SW  +I    Q      A   F  M++ G  P+L T +S+ 
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 237 -TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
             S +         + VH    + G F+ D+ +GNA++ MYAK G I+ A  VF+G+  +
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAG-FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DVISWN +I G AQNG   EA  +F  M++   + P+  TY+S+L  +   GA     ++
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEWVKEV 357

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   ++  L  D+ V +  V MY +CG IDDA  +F ++   +   WNA+I        G
Sbjct: 358 HKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCG 417

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL+ F QM  EG  PD  TFV++L+A      + E  +  H    + G+   L+    
Sbjct: 418 REALSLFLQMRREGFFPDATTFVNILSANVGEEAL-EWVKEVHSYAIDAGL-VDLRVGNA 475

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG-NMELGAVASDRLFEVDSE 534
           +V ++ + G+   A     +M V  + + W  ++     HG   E  ++    L E    
Sbjct: 476 LVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVP 534

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   YV + +  A+ G  E V EV S A + GL      S + V N +   Y    +   
Sbjct: 535 DATTYVSILSACASTGALEWVKEVHSHAVNAGLV-----SDLRVGNALVHMYAKCGSVDD 589

Query: 595 YEKIYDEL 602
             +++D++
Sbjct: 590 ARRVFDDM 597



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 165/519 (31%), Positives = 251/519 (48%), Gaps = 29/519 (5%)

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           MI GY + G A +A+ +  +MR EG   + IT  SIL  C    ++  G  IH +I++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
            + ++ V   L+NMY K G +  A  +FD+M+ER+V+SW  +I           A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            MQ+ G  P+  T VS+ +  A        + VH   +  G  + D+ +GNA+V MYAK 
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL-DLRVGNALVHMYAKS 179

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I+ A  VF+G+  +D+ SW  +I G AQ+G   EA  +F  ME    + PN  TY+SI
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL-PNLTTYLSI 238

Query: 340 L--PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           L   A +  GAL    ++H    K     D+ V   L+ MY KCG IDDA  +F  +   
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + WNA+I     +G G +A   F +M  EG  PD  T++SLL     +G   E  +  
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG-AWEWVKEV 357

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H    E G+   L+     V ++ R G +  A      + VR + + W A++G       
Sbjct: 358 HKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGV---AQ 413

Query: 518 MELGAVASDRLFEVDSENVGYY----VLMSNIYANVGK--WEGVDEVRSLARDRGLKKTP 571
            + G  A     ++  E  G++      ++ + ANVG+   E V EV S A D GL    
Sbjct: 414 QKCGREALSLFLQMRRE--GFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL---- 467

Query: 572 GWSSIEVNNKVDIFYT--GNRTHPKYEKIYDEL--RNLT 606
               + V N +   Y   GN  + K  +++D++  RN+T
Sbjct: 468 --VDLRVGNALVHMYAKCGNTMYAK--QVFDDMVERNVT 502


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/625 (41%), Positives = 385/625 (61%), Gaps = 24/625 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD +  RD  SWN+MISGY  +G     L I  +M   G+ +D  T+ S+L  CA+
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  +  G  +H   +K   E  +  SN L++MY+K G +  ALRVF++M ER+VVSW S+
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y +      A      M++ G++ D++ + S+    A+     N + VH +I +   
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI-KANN 244

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ + NA++DMYAK G +  A +VF  + VKD+ISWNT++                 
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------- 287

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                 E+ P+  T   ILPA + + AL +G +IH  +++N    D  VA  LVD+Y KC
Sbjct: 288 -----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +  A  LF  +P    V W  +I+ +G+HG G++A+  F +M D G+ PD ++F+S+L
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGL+ +G R+F++M+ +F I+P L+HY CMVDL  R G+L  A+ FI+ +P+ PD
Sbjct: 403 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL  CRI+ ++EL    ++R+FE++ EN GYYVL++NIYA   KWE V  +R  
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 522

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNR-THPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
              +GL+K PG S IE+  +V++F +GN  +HP  +KI   L+ +  KMK  GY P   +
Sbjct: 523 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 582

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L + +E +KE  L  HSE+LA+AFG+++ PP+  I++ KNLRVCGDCH   KF+S+ T 
Sbjct: 583 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 642

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI++RDSNRFHHFKDG CSC  +W
Sbjct: 643 REIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 252/491 (51%), Gaps = 41/491 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS YV  G L+E     Y+  +  G+  D  T   VL  C     L  GK +H   +K 
Sbjct: 84  MISGYVSNG-LTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKS 142

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE  +  + +LL MY + G  + A ++F+ M  R+  SW +MI+GY + G +  A+ +L
Sbjct: 143 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 202

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV +D + + SIL  CARS ++ +G  +H YI  + +  NLFV N L++MYAK 
Sbjct: 203 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC 262

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M+ +D++SWN+++                       ++PD  T+  + 
Sbjct: 263 GSMEGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRTMACIL 301

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+     + +HG+I+R G +  D  + NA+VD+Y K G++  A  +F+ +P KD+
Sbjct: 302 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 360

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY  +G  +EAI  F  M +   I P++ +++SIL A SH G L QG +   
Sbjct: 361 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY 419

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQ 414
            ++KN    +  +    C+VD+  + G +  A      +P +  +  W A++    I+  
Sbjct: 420 -IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD 478

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM--MQEEFGIKPHLKH 472
            + A     ++ +  + P++  +  LL     + + +E +++  +  M+E+ G K   K+
Sbjct: 479 IELAEKVAERVFE--LEPENTGYYVLL-----ANIYAEAEKWEEVKRMREKIGKKGLRKN 531

Query: 473 YGC-MVDLFGR 482
            GC  +++ GR
Sbjct: 532 PGCSWIEIKGR 542



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 150/335 (44%), Gaps = 50/335 (14%)

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN------------ 283
           L S  A   D +  R V   + ++     +V + N +V  YAK+G               
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKK-----NVYLWNFMVSEYAKIGDFKESICLFKIMVEK 56

Query: 284 --------SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
                   SA  +F+ L  +DVISWN++I+GY  NGL    + +++ M     I+ +  T
Sbjct: 57  GIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLAT 115

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            +S+L   +  G L  G  +H+  IK+     +  +  L+DMY KCG +D A+ +F ++ 
Sbjct: 116 IISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG 175

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
             + V W ++I+ +   G  D A+   +QM  EGV+ D +   S+L AC+ SG +  G+ 
Sbjct: 176 ERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD 235

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV-------------RPDA 502
             H   +   +  +L     ++D++ + G +  A++    M V             +PD+
Sbjct: 236 -VHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDS 294

Query: 503 SIWGALLGAC----------RIHGNMELGAVASDR 527
                +L AC           IHG +     +SDR
Sbjct: 295 RTMACILPACASLSALERGKEIHGYILRNGYSSDR 329


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/686 (40%), Positives = 412/686 (60%), Gaps = 13/686 (1%)

Query: 26  GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+ P+ YT   V+ A  N   +  G ++H  V+K GFE  + V  SL+ +Y R G+   A
Sbjct: 189 GVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDA 248

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R +FD M +RD  +WN+MI+GY ++G  +E  +I ++M+L GV    +T AS++  CA  
Sbjct: 249 RDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL 308

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNSI 201
             +    L+    +K G   +  V   L+   +K   M  AL +F  M E ++VVSW ++
Sbjct: 309 RELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+   Q+     A   F+ M++ G++P+  T  ++ ++   +        +H  +++   
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVF----VSEMHAEVIKTN- 423

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF- 320
           +     +G A++D Y KLG    A  VFE +  KD+++W+ ++ GYAQ G   EA ++F 
Sbjct: 424 YERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFH 483

Query: 321 QMMEECNEINPNQGTYVSILPA-YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           Q+++E   I PN+ T+ S++ A  S   A  QG + HA  IK  L   + V++ LV MY 
Sbjct: 484 QLIKEG--IKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYA 541

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           K G ID A  +F +      V WN++IS +  HGQ  KAL  F +M    +  D +TF+ 
Sbjct: 542 KRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIG 601

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           ++TAC+H+GLV +GQ+YF+ M  +  I P +KHY CM+DL+ RAG L  A   I  MP  
Sbjct: 602 VITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFP 661

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P A++W  LLGA R+H N+ELG +A+++L  +  E+   YVL+SN+YA  G W+    VR
Sbjct: 662 PGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVR 721

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
            L   R +KK PG+S IEV NK   F  G+ THP   +IY +L  L+ ++K  GY PD  
Sbjct: 722 KLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTK 781

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            V  D+E+++KE IL+ HSERLAIAFG+I++PP+ PIQI KNLRVCGDCHN+TK +S + 
Sbjct: 782 NVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVE 841

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           +R I+VRDSNRFHHFKDG+CSCGDYW
Sbjct: 842 QRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 264/520 (50%), Gaps = 20/520 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKLGFEW 61
           Y R  +  EA++ F    L S L+PD  T   V   C   +DGK   ++HC  +K G   
Sbjct: 68  YSRDKQTKEALNLFVSL-LHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVD 126

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V V  SL+ MY +    N  R++FD+M  R+  SW ++++GY  +G      ++  +M+
Sbjct: 127 HVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQ 186

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EGV  +  TV++++        +  GL +H  +VKHG E  + V N+LI++Y++ GM+R
Sbjct: 187 YEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLR 246

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD+M  RD V+WNS+IA Y ++   +     F  MQ AG++P  +T  S+    A
Sbjct: 247 DARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCA 306

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISW 300
            L +    + +    ++ G F  D I+  A++   +K   ++ A ++F  +   K+V+SW
Sbjct: 307 SLRELALVKLMQCKALKSG-FTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSW 365

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I+G  QNG   +A+ +F  M     + PN  TY +IL  +  V       ++HA VI
Sbjct: 366 TAMISGCLQNGGNDQAVNLFSQMRR-EGVKPNHFTYSAILTVHYPVFV----SEMHAEVI 420

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K        V T L+D Y K G   DA+ +F  +     + W+A+++ +   G+ ++A  
Sbjct: 421 KTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAK 480

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC----M 476
            F Q++ EG++P+  TF S++ AC+     +E  + FH     + IK  L +  C    +
Sbjct: 481 LFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFH----AYAIKMRLNNALCVSSAL 536

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           V ++ + G++  AH   +    R D   W +++     HG
Sbjct: 537 VTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHG 575



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 78  LANVARKLFDDMPVRDS--GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           + ++A  LFD +P R +     N ++  Y +     EAL++   +    +  D  T++ +
Sbjct: 40  VPHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCV 99

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
             +CA S +   G  +H   VK GL  ++ V  +L++MY K   +    RVFD+M ER+V
Sbjct: 100 FNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNV 159

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSW S++A Y  +         F  MQ  G+ P+  T+ ++ + +           VH  
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +++ G F E + + N+++ +Y++LG++  A  VF+ + ++D ++WN++I GY +NG   E
Sbjct: 220 VVKHG-FEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
             E+F  M+    + P   T+ S++ + + +  L     +  + +K+    D  V T L+
Sbjct: 279 VFEIFNKMQLAG-VKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALM 337

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
               KC  +DDA+SLF  +    + V W A+IS    +G  D+A+N F QM  EGV+P+H
Sbjct: 338 VALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNH 397

Query: 435 ITFVSLLT 442
            T+ ++LT
Sbjct: 398 FTYSAILT 405


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/714 (38%), Positives = 429/714 (60%), Gaps = 12/714 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y    +  EA+  F+   L  G  P+ Y F  V +AC    N+  GK I   +LK 
Sbjct: 13  LISCYANNEKAFEAISAFFDM-LECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKT 71

Query: 58  G-FEWDVFVAASLLHMYCRF-GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G FE DV V  +L+ M+ +  G    A K+FD MP R+  +W  MI+ + Q G + +A+D
Sbjct: 72  GYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVD 131

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  +M L G   D  T++ ++  CA    +  G   H  ++K GL+ ++ V  +L++MYA
Sbjct: 132 LFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYA 191

Query: 176 KF---GMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLL 231
           K    G +  A +VFD+M   +V+SW +II  Y QS      A   F  M Q  ++P+  
Sbjct: 192 KCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHF 251

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T  S+    A L+D      V+  +++      + + GN+++ MY++ G + +A   F+ 
Sbjct: 252 TFSSVLKACANLSDIWLGEQVYALVVKMRLASINCV-GNSLISMYSRCGNMENARKAFDV 310

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           L  K+++S+NT++  YA++  + EA E+F  +E       N  T+ S+L   S +GA+ +
Sbjct: 311 LFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAG-TGVNAFTFASLLSGASSIGAIGK 369

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IH+R++K+    ++ +   L+ MY +CG I+ A  +F ++   + + W ++I+    
Sbjct: 370 GEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAK 429

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG   +AL  F +ML+ GV P+ +T++++L+ACSH GL+SEG ++F  M+ E GI P ++
Sbjct: 430 HGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRME 489

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY C+VDL GR+GHL  A   + +MP + DA +    LGACR+HGNM+LG  A++ + E 
Sbjct: 490 HYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQ 549

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           D  +   Y+L+SN++A+ G+WE V E+R   ++R L K  G S IEV NKV  FY G+ +
Sbjct: 550 DPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTS 609

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ ++IYDEL  L  K+K LGY+P   FVL DVEE++KE  L  HSE++A+A+G IS+ 
Sbjct: 610 HPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTS 669

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              PI++FKNLRVCGDCH   K+ S +  +EI++RD+NRFHHFKDG CSC DYW
Sbjct: 670 TSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 241/486 (49%), Gaps = 16/486 (3%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           RD  SW+A+IS Y  +  A EA+    +M   G   +      +   C+  +NI  G +I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 152 HLYIVKHG-LEFNLFVSNNLINMYAKF-GMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
             +++K G  E ++ V   LI+M+ K  G +  A +VFD+M +R+VV+W  +I  ++Q  
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   F  M  +G  PD  TL  + S  A++      R  H  +M+ G  + DV +G
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL-DVCVG 183

Query: 270 NAVVDMYAKL---GIINSACAVFEGLPVKDVISWNTLITGYAQN-GLASEAIEVFQMMEE 325
            ++VDMYAK    G ++ A  VF+ +PV +V+SW  +ITGY Q+ G   EAIE+F  M +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             ++ PN  T+ S+L A +++  +  G +++A V+K  L     V   L+ MY +CG ++
Sbjct: 244 -GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNME 302

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A   F  +   + V +N I++ +      ++A   F ++   G   +  TF SLL+  S
Sbjct: 303 NARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGAS 362

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI- 504
             G + +G++  H    + G K +L     ++ ++ R G++  A      M    D ++ 
Sbjct: 363 SIGAIGKGEQ-IHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM---GDGNVI 418

Query: 505 -WGALLGACRIHGNMELGAVASDRLFEVD-SENVGYYVLMSNIYANVGKW-EGVDEVRSL 561
            W +++     HG          ++ E   S N   Y+ + +  ++VG   EG+   +S+
Sbjct: 419 SWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSM 478

Query: 562 ARDRGL 567
             + G+
Sbjct: 479 KVEHGI 484



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 164/304 (53%), Gaps = 15/304 (4%)

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           +RD+VSW+++I+ Y  +     A   F  M + G  P+      +    +   +    + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAK-LGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           + GF+++ G+F  DV +G A++DM+ K  G + SA  VF+ +P ++V++W  +IT + Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G + +A+++F  M     + P++ T   ++ A + +G L  G + H  V+K+ L  DV V
Sbjct: 124 GFSRDAVDLFLDMVLSGYV-PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 371 ATCLVDMYGKC---GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK-ALNFFRQML 426
              LVDMY KC   G +DDA  +F ++P  + + W AII+ +   G  D+ A+  F +M+
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC----MVDLFGR 482
              V+P+H TF S+L AC++   +  G++ + ++     +K  L    C    ++ ++ R
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALV-----VKMRLASINCVGNSLISMYSR 297

Query: 483 AGHL 486
            G++
Sbjct: 298 CGNM 301


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/684 (38%), Positives = 428/684 (62%), Gaps = 8/684 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           SG+  D + +  ++ +  +    K+IH  +L LG ++  F+   L+H    FG    AR+
Sbjct: 16  SGIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQ 74

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FDD+P      WNA+I GY ++ +  +AL +   M+L  VS D  T   +L  C+   +
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD--QMMERDVVSWNSII 202
           +  G  +H  + + G + ++FV N LI +YAK   +  A  VF+   + ER +VSW +I+
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           +AY Q+ +P+ A   F+ M++  ++PD + LVS+ +    L D +  RS+H  +++ G  
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 263 ME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           +E D++I  ++  MYAK G + +A  +F+ +   ++I WN +I+GYA+NG A EAI++F 
Sbjct: 255 IEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M    ++ P+  +  S + A + VG+L Q   ++  V ++    DVF+++ L+DM+ KC
Sbjct: 313 EMIN-KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G ++ A  +F +      V W+A+I  +G+HG+  +A++ +R M   GV P+ +TF+ LL
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            AC+HSG+V EG  +F+ M +   I P  +HY C++DL GRAGHL  A+  I+ MPV+P 
Sbjct: 432 MACNHSGMVREGWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPG 490

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            ++WGALL AC+ H ++ELG  A+ +LF +D  N G+YV +SN+YA    W+ V EVR  
Sbjct: 491 VTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVR 550

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +++GL K  G S +EV  +++ F  G+++HP+YE+I  ++  + +++K  G+V +K   
Sbjct: 551 MKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDAS 610

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D+ ++E E  L SHSER+AIA+G+IS+P  +P++I KNLR C +CH  TK IS++ +R
Sbjct: 611 LHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDR 670

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 671 EIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 5/208 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y + G   EA+D F++  +   +RPD  +    + AC    +L   + ++  V + 
Sbjct: 294 MISGYAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVF++++L+ M+ + G    AR +FD    RD   W+AMI GY   G A EA+ + 
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV  + +T   +L  C  S  +  G      +  H +         +I++  + 
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRA 472

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAA 204
           G +  A  V   M ++  V  W ++++A
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/625 (41%), Positives = 384/625 (61%), Gaps = 24/625 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD +  RD  SWN+MISGY  +G     L+I  +M   G+ +D  T+ S+L  CA 
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  +  G  +H   +K   E  +  SN L++MY+K G +  ALRVF++M ER+VVSW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y +      A      M++ G++ D++   S+    A+     N + VH +I +   
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYI-KANN 382

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ + NA++DMY K G ++ A +VF  + VKD+ISWNT+I                 
Sbjct: 383 MESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI----------------- 425

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                 E+ P+  T   ILPA + + AL +G +IH  +++N    D  VA  LVD+Y KC
Sbjct: 426 -----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +  A  LF  +P    V W  +IS +G+HG G++A+  F +M D G+ PD ++F+S+L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGL+ +G R+F++M+ +F I+P L+HY CMVDL  R G+L  A+ FI+ +P+ PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL  CRI+ ++EL    ++R+FE++ EN GYYVL++NIYA   KWE V  +R  
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 660

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNR-THPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
              +GL+K PG S IE+  KV++F +GN  +HP  +KI   L+ +  KMK  GY P   +
Sbjct: 661 IGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L + +E +KE  L  HSE+LA+AFG+++ PP+  +++ KNLRVCGDCH   KF+S+ T 
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI++RDSNRFHHFK+G CSC  +W
Sbjct: 781 REIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 247/483 (51%), Gaps = 40/483 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G     ++ + Q  +  G+  D  T   VL  C N   L  GK +H   +K 
Sbjct: 222 MISGYVSNGLTERGLEIYKQM-MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE  +  + +LL MY + G  + A ++F+ M  R+  SW +MI+GY + G +  A+ +L
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV +D +   SIL  CARS ++ +G  +H YI  + +E NLFV N L++MY K 
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKC 400

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M+ +D++SWN++I                       ++PD  T+  + 
Sbjct: 401 GSMDGANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACIL 439

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+     + +HG+I+R G +  D  + NA+VD+Y K G++  A  +F+ +P KD+
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+GY  +G  +EAI  F  M +   I P++ +++SIL A SH G L QG +   
Sbjct: 499 VSWTVMISGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQ 414
            ++KN    +  +    C+VD+  + G +  A      +P +  +  W A++    I+  
Sbjct: 558 -IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHD 616

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM--MQEEFGIKPHLKH 472
            + A     ++ +  + P++  +  LL     + + +E +++  +  M+E+ G K   K+
Sbjct: 617 IELAEKVAERVFE--LEPENTGYYVLL-----ANIYAEAEKWEEVKRMREKIGKKGLRKN 669

Query: 473 YGC 475
            GC
Sbjct: 670 PGC 672



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 210/479 (43%), Gaps = 84/479 (17%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           R    +NA I  +CQ GN   A++++     +   ++  T +S+L +CA S ++  G  +
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELV--CMCQKSELETKTYSSVLQLCAGSKSLTDGKKV 121

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--------------------- 190
           H  I  + +  +  +   L+++YA  G ++   RVFD M                     
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 191 ------------------------------MERDVVSWNSIIAAYEQSNDPITAHGF--F 218
                                          +RDV+SWNS+I+ Y   ++ +T  G   +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGY--VSNGLTERGLEIY 239

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M   GI  DL T++S+    A        ++VH   + +  F   +   N ++DMY+K
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI-KSTFERRINFSNTLLDMYSK 298

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G ++ A  VFE +  ++V+SW ++I GY ++G +  AI + Q ME+   +  +     S
Sbjct: 299 CGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK-EGVKLDVVATTS 357

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           IL A +  G+L  G  +H  +  N +  ++FV   L+DMY KCG +D A S+F  +    
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKD 417

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YF 457
            + WN +I                       ++PD  T   +L AC+    +  G+  + 
Sbjct: 418 IISWNTMIG---------------------ELKPDSRTMACILPACASLSALERGKEIHG 456

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           ++++  +    H+ +   +VDL+ + G LG+A      +P + D   W  ++    +HG
Sbjct: 457 YILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMISGYGMHG 512



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 113/293 (38%), Gaps = 66/293 (22%)

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           + V  +N  I  + Q G    A+E+  M   C +      TY S+L   +   +L  G K
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCM---CQKSELETKTYSSVLQLCAGSKSLTDGKK 120

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV-------------------- 394
           +H+ +  N +  D  +   LV +Y  CG + +   +F  +                    
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 395 --------------------PRSSS-----------VPWNAIISCHGIHGQGDKALNFFR 423
                               P S+S           + WN++IS +  +G  ++ L  ++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           QM+  G+  D  T +S+L  C++SG +S G +  H +  +   +  +     ++D++ + 
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSKC 299

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALL----------GACRIHGNMELGAVASD 526
           G L  A    + M  R   S W +++          GA R+   ME   V  D
Sbjct: 300 GDLDGALRVFEKMGERNVVS-WTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLD 351


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/768 (36%), Positives = 438/768 (57%), Gaps = 64/768 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  ++  GRL  A+    +  L +G +PD +T P  LKAC  L     G   H  +   
Sbjct: 120 LVRAHIEEGRLDRAIGVSCRM-LRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCN 178

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEAL 114
           GFE +VFV  +L+ MY R G    A  +FD++    + D  SWN++++ + +  N   AL
Sbjct: 179 GFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTAL 238

Query: 115 DILDEM------RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           D+  EM      +      D I++ +ILP CA    +     IH Y +++G   + FV N
Sbjct: 239 DLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCN 298

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI-- 226
            LI+ YAK G M+ A+ VF+ M  +DVVSWN+++  Y QS     A   F  M++  I  
Sbjct: 299 ALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPL 358

Query: 227 ---------------------------------QPDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                            +P+ +T++SL S  A L         H
Sbjct: 359 DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETH 418

Query: 254 GFIMRRGWF-----------MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISW 300
            + +++               ED+++ NA++DMY+K     +A  +F  +P ++  V++W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTW 478

Query: 301 NTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
             +I GYAQ G +++A+++F +M+ +   + PN  T   IL A +H+ +LR G +IHA V
Sbjct: 479 TVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYV 538

Query: 360 IKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++        FVA CL+DMY KCG +D A ++F  +P+ + V W +++S +G+HG+G +
Sbjct: 539 TRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKE 598

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F +M   G  PD I+F+ LL ACSHSG+V +G  YF +M+ ++G+    +HY C++
Sbjct: 599 ALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVI 658

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+G L  A   IQ MP+ P A+IW ALL ACR+H N+EL   A ++L  + +EN G
Sbjct: 659 DLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDG 718

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y L+SNIYA   +W+ V  +R L +  G+KK PG S ++       F+ G+R+HP   +
Sbjct: 719 SYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPE 778

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++K +GYVP+ +F L DV+++EK ++LT HSE+LA+A+G++++ P  PI+
Sbjct: 779 IYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIR 838

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH+   +IS+I + EIIVRDS+RFHHFK+G CSCG YW
Sbjct: 839 ITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 148/566 (26%), Positives = 251/566 (44%), Gaps = 88/566 (15%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--------------------- 72
           F  +LK CR++   ++IH  ++  G    +   ASLL +                     
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIAYGL---LSYPASLLSVSLPPLPSHSYVSPKSLGTGVV 90

Query: 73  --YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI 130
             Y   G  + A  + + +    +  WN ++  + + G    A+ +   M   G   D  
Sbjct: 91  ASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHF 150

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T+   L  C    +  SG   H  I  +G E N+FV N L+ MY++ G +  A  VFD++
Sbjct: 151 TLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEI 210

Query: 191 MER---DVVSWNSIIAAYEQSNDPITAHGFFTTM------QQAGIQPDLLTLVSLTSIVA 241
             +   DV+SWNSI+AA+ + ++P TA   F+ M      +    + D++++V++    A
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACA 270

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L     ++ +H + +R G F  D  + NA++D YAK G +  A  VF  +  KDV+SWN
Sbjct: 271 SLKALPQTKEIHSYAIRNGTF-ADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWN 329

Query: 302 TLITGYAQNGLASEAIEVFQMMEECN---------------------------------- 327
            ++TGY Q+G    A E+F+ M + N                                  
Sbjct: 330 AMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILY 389

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC------------FDVFVATCLV 375
              PN  T +S+L A + +GAL QG++ HA  +K CL              D+ V   L+
Sbjct: 390 GSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALI 449

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDE--GVR 431
           DMY KC     A ++F  +PR     V W  +I  +  +G  + AL  F +M+ +   V 
Sbjct: 450 DMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVA 509

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-CMVDLFGRAGHLGMAH 490
           P+  T   +L AC+H   +  G++    +      +  +     C++D++ + G +  A 
Sbjct: 510 PNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTAR 569

Query: 491 NFIQNMPVRPDASIWGALLGACRIHG 516
           N   +MP R + S W +++    +HG
Sbjct: 570 NVFDSMPKRNEVS-WTSMMSGYGMHG 594


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/746 (38%), Positives = 435/746 (58%), Gaps = 44/746 (5%)

Query: 1   MISVYVRCGRLSEA-------------------VDCF------YQFTLT------SGLRP 29
           +IS+Y +CG+  +A                   V CF      ++  LT      +G  P
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 30  DFYTFPPVLKACRN---LVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANV--AR 83
           + Y F    +AC     +  G  I   V+K G+ + DV V   L+ M+ + G  ++  A 
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAF 225

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           K+F+ MP R++ +W  MI+   Q G A EA+D+  +M   G   D  T++ ++  CA  +
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANME 285

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERDVVSWNS 200
            +L G  +H   ++HGL  +  V   LINMYAK    G M  A ++FDQ+++ +V SW +
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 201 IIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +I  Y Q       A   F  M    + P+  T  S     A L   R    V    ++ 
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F     + N+++ MYA+ G I+ A   F+ L  K++IS+NT+I  YA+N  + EA+E+
Sbjct: 406 G-FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALEL 464

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  +E+   +  +  T+ S+L   + +G + +G +IHARVIK+ L  +  V   L+ MY 
Sbjct: 465 FNEIED-QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYS 523

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +CG I+ A  +F  +   + + W +II+    HG   +AL  F +ML+EGVRP+ +T+++
Sbjct: 524 RCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIA 583

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L+ACSH GLV+EG ++F  M  E G+ P ++HY C+VD+ GR+G L  A  FI +MP +
Sbjct: 584 VLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK 643

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
            DA +W   LGACR+HGN+ELG  A+  + E +  +   Y+L+SN+YA++ KW+ V  +R
Sbjct: 644 ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIR 703

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              +++ L K  G S +EV NKV  FY G+ +HPK  +IYDEL+NL+ K+K LGYVP+  
Sbjct: 704 KAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLD 763

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
           FVL DVEE++KE +L  HSE++A+AFG+IS+    PI++FKNLR+CGDCH+  K+IS  T
Sbjct: 764 FVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMAT 823

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            REIIVRD+NRFHH KDG CSC +YW
Sbjct: 824 GREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 195/390 (50%), Gaps = 16/390 (4%)

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +G   +A+  L+ M  +G   D  T +  L  C R+ +   G L+H  + +  L+ +   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 167 SNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
            N+LI++Y+K G    A  +F  M   RD++SW+++++ +  +N    A   F  M + G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK-LGIINS 284
             P+     + T   +         S+ GF+++ G+   DV +G  ++DM+ K  G + S
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VFE +P ++ ++W  +IT   Q G A EAI++F  M   +   P++ T   ++ A +
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDM-IFSGYEPDRFTLSGVISACA 282

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC---GRIDDAMSLFYQVPRSSSVP 401
           ++  L  G ++H++ I++ L  D  V  CL++MY KC   G +  A  +F Q+   +   
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 402 WNAIISCHGIHGQGD-KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           W A+I+ +   G  D +AL+ FR M+   V P+H TF S L AC++   +  G++ F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF--- 399

Query: 461 QEEFGIKPHLKHYGC----MVDLFGRAGHL 486
                +K       C    ++ ++ R+G +
Sbjct: 400 --THAVKLGFSSVNCVANSLISMYARSGRI 427


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/710 (38%), Positives = 429/710 (60%), Gaps = 9/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  +V  G   +AVD FY      G+R D +T+P V+KAC  L D   G+++H  V+K 
Sbjct: 97  MIRGFVDNGLFWDAVD-FYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKS 155

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D+++  SL+ MY + G    A  +F +MPVRD  SWN+MISGY   G+   +L   
Sbjct: 156 GLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCF 215

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+  G+ +D  +V  IL  C+    + +G  IH  +++  LE ++ V  +L++MYAK 
Sbjct: 216 REMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKC 275

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSL 236
           G M +A R+FDQ+ ++ +V+WN++I  Y  +     +  +   MQ+ G + PD +T+++L
Sbjct: 276 GRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINL 335

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               AQL      +SVHGF +R G F+  +++  A+VDMY + G +  A  +F  +  ++
Sbjct: 336 LPPCAQLEAILLGKSVHGFAIRNG-FLPHLVLETALVDMYGECGKLKPAECLFGQMNERN 394

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKI 355
           +ISWN +I  Y +NG   +A+ +FQ +  CN+ + P+  T  SILPAY+ + +LR+  +I
Sbjct: 395 LISWNAMIASYTKNGENRKAMTLFQDL--CNKTLKPDATTIASILPAYAELASLREAEQI 452

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  V K  L  + FV+  +V MYGKCG +  A  +F ++     + WN +I  + IHG G
Sbjct: 453 HGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFG 512

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             ++  F +M ++G  P+  TFVSLL +CS +GLV+EG  YF+ M+ ++ I P ++HYGC
Sbjct: 513 RISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGC 572

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL GR G+L  A NFI+ MP+ P A IWG+LL A R  G++EL  +A++ +  ++ +N
Sbjct: 573 ILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDN 632

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YVL+SN+YA  G+WE V+ ++   +  GL+K+ G S +++++K   F   +R+  + 
Sbjct: 633 TGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEI 692

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
             +YD L  ++ K+    YV   +       E ++ +   SHS RLAI FG+IS+   +P
Sbjct: 693 NMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNP 752

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + + KN+R+C  CH + K IS+ T+REIIVRDS  FHHF  G CSCGDYW
Sbjct: 753 VLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 259/507 (51%), Gaps = 11/507 (2%)

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           L  Y   G    A  LF++M   D+  WN MI G+  +G   +A+D    M   GV  D 
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
            T   ++  C    ++  G  +H  ++K GL+ ++++ N+LI MYAK G +  A  VF +
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M  RD+VSWNS+I+ Y    D   +   F  MQ +GI+ D  +++ +    +     RN 
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNG 246

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + +H  +MR    + DV++  ++VDMYAK G ++ A  +F+ +  K +++WN +I GY+ 
Sbjct: 247 KEIHCQMMRSRLEL-DVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSL 305

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N  + E+    + M+E  +++P+  T +++LP  + + A+  G  +H   I+N     + 
Sbjct: 306 NAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLV 365

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           + T LVDMYG+CG++  A  LF Q+   + + WNA+I+ +  +G+  KA+  F+ + ++ 
Sbjct: 366 LETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKT 425

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PD  T  S+L A +    + E ++  H    +  +  +      +V ++G+ G+L  A
Sbjct: 426 LKPDATTIASILPAYAELASLREAEQ-IHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRA 484

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHG----NMELGAVASDRLFEVDSENVGYYVLMSNI 545
                 M  + D   W  ++ A  IHG    ++EL +   ++ FE +       +L  ++
Sbjct: 485 REIFDRMTFK-DVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSV 543

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPG 572
              V   EG +   S+ RD  +   PG
Sbjct: 544 AGLVN--EGWEYFNSMKRDYNI--NPG 566


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/702 (40%), Positives = 413/702 (58%), Gaps = 35/702 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMPVRDS 94
           +L  C+++   K+IH  ++K G    +F  + L+      R G  + A  LF+ +   + 
Sbjct: 35  LLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNL 94

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             WN+MI G   S +   AL     M   GV  +  T   +L  CA+  +   G  IH +
Sbjct: 95  FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ------------------------- 189
           ++K G   ++F+  +LINMYA+ G M +A  VFDQ                         
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214

Query: 190 ------MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
                 M  +DVVSWN++IA Y Q      A   F  M++A + P+  T+VS+ S  AQ 
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS 274

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
           N      S+  +I  RG    ++ + NA++DMY+K G + +A  +F+ +  +DVISWN +
Sbjct: 275 NALDLGNSMRSWIEDRG-LCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVM 333

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GY       EA+ +F+ M   + + P + T++SILP+ +H+GA+  G  IHA + KN 
Sbjct: 334 IGGYTHMCSYKEALALFREML-ASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
                 ++T L+D+Y KCG I  A  +F  +   S   WNA+I    +HGQ DKA   F 
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFS 452

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M  +G+ P+ ITFV +L+AC H+GLV  GQ++F  M +++ I P  +HYGCM+DL GRA
Sbjct: 453 KMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRA 512

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G    A + +QNM V+PD +IWG+LLGACR HG +ELG + ++RLFE++ +N G YVL+S
Sbjct: 513 GLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLS 572

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA  GKW+ V  +R+   DRG+KK PG ++IEV+N V  F  G++ HP+ E IY  L 
Sbjct: 573 NIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLE 632

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +  ++K  G+V D S VL D++E+ KE  L+ HSE+LAIAFG+IS+ P +PI+I KNLR
Sbjct: 633 EVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLR 692

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           VC +CH+ TK IS+I  REII RD NRFHHFKDG CSC DYW
Sbjct: 693 VCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/436 (32%), Positives = 231/436 (52%), Gaps = 44/436 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F+   + SG+ P+ YTFP +LK+C  L    +GK+IH  VLKLGF  DVF+  SL++MY 
Sbjct: 116 FFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYA 175

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                               +G  + AR+LFD+MPV+D  SWNAMI+G
Sbjct: 176 QSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAG 235

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y Q G + EAL + ++MR   V  +  T+ S+L  CA+S+ +  G  +  +I   GL  N
Sbjct: 236 YAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSN 295

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI+MY+K G ++ A  +FD M+ERDV+SWN +I  Y        A   F  M  
Sbjct: 296 LKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLA 355

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +G++P  +T +S+    A L      + +H +I  + +      +  +++D+YAK G I 
Sbjct: 356 SGVEPTEITFLSILPSCAHLGAIDLGKWIHAYI-NKNFNSVSTSLSTSLIDLYAKCGNIV 414

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           +A  VF+G+ +K + SWN +I G A +G A +A E+F  M   + I PN+ T+V IL A 
Sbjct: 415 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSS-DGIEPNEITFVGILSAC 473

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP-RSS 398
            H G +  G +  + ++++   + +   +    C++D+ G+ G  ++A SL   +  +  
Sbjct: 474 KHAGLVDLGQQFFSSMVQD---YKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPD 530

Query: 399 SVPWNAIISCHGIHGQ 414
              W +++     HG+
Sbjct: 531 GAIWGSLLGACRDHGR 546



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 211/432 (48%), Gaps = 44/432 (10%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMER 193
           L + ++  +I +   IH +I+K GL   LF  + LI   A  + G + +A+ +F+ + E 
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           ++  WNS+I     S  P  A  FF  M  +G++P+  T   L    A+L      + +H
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG---------------------- 291
             +++ G F+ DV I  ++++MYA+ G +N+A  VF+                       
Sbjct: 153 AHVLKLG-FVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 211

Query: 292 ---------LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                    +PVKDV+SWN +I GYAQ G + EA+ +F+ M + N + PN+ T VS+L A
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN-VPPNESTIVSVLSA 270

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            +   AL  G  + + +    LC ++ +   L+DMY KCG +  A  LF  +     + W
Sbjct: 271 CAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISW 330

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           N +I  +       +AL  FR+ML  GV P  ITF+S+L +C+H G +  G+     + +
Sbjct: 331 NVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK 390

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            F           ++DL+ + G++  A      M ++  AS W A++    +HG      
Sbjct: 391 NFNSVSTSLSTS-LIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQ----- 443

Query: 523 VASDRLFEVDSE 534
             +D+ FE+ S+
Sbjct: 444 --ADKAFELFSK 453


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/683 (40%), Positives = 405/683 (59%), Gaps = 9/683 (1%)

Query: 29  PDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   TF  +LK C    +L  G+ +H  +   G   +   + +L +MY +      AR++
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSD 143
           FD MP RD  +WNA+++GY ++G    A++ +  M+ E  G   D +T+ S+LP CA + 
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            + +   +H + ++ GL+  + VS  +++ Y K G +  A  VFD M  R+ VSWN++I 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y  + +   A   F  M Q G+     ++++      +L      R VH  ++R G   
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVG-LS 252

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISWNTLITGYAQNGLASEAIEVFQM 322
            +V + NA++  YAK    + A  VF  L  K   ISWN +I G+ QN    +A  +F  
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFAR 312

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M+  N + P+  T VS++PA + +    Q   IH   I++ L  DV+V T L+DMY KCG
Sbjct: 313 MQLEN-VRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCG 371

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           R+  A  LF        + WNA+I  +G HG G  A+  F +M   G  P+  TF+S+L 
Sbjct: 372 RVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLA 431

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSH+GLV EGQ+YF  M++++G++P ++HYG MVDL GRAG L  A +FI+NMP+ P  
Sbjct: 432 ACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGI 491

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           S++GA+LGAC++H N+EL   ++  +FE+  E   Y+VL++NIYAN   W+ V  VR+  
Sbjct: 492 SVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAM 551

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
             +GL+KTPGWS I++ N+V  FY+G+  H   + IY  L  L  ++K +GYVPD   + 
Sbjct: 552 EKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI- 610

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DVE+D K  +L +HSE+LAIA+G+I + P + IQI KNLRVC DCHN TK IS +T RE
Sbjct: 611 HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGRE 670

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           II+RD  RFHHFKDG CSCGDYW
Sbjct: 671 IIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 218/401 (54%), Gaps = 8/401 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT-LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLK 56
           +++ Y R G  S A++   +      G RPD  T   VL AC   R L   +++H   L+
Sbjct: 88  VVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALR 147

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G +  V V+ ++L  YC+ G    AR +FD MPVR+S SWNAMI GY  +GNA EA+ +
Sbjct: 148 AGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMAL 207

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M  EGV +   +V + L  C     +     +H  +V+ GL  N+ V+N LI  YAK
Sbjct: 208 FWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAK 267

Query: 177 FGMMRHALRVFDQMMERDV-VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
                 A +VF+++  +   +SWN++I  + Q+  P  A   F  MQ   ++PD  TLVS
Sbjct: 268 CKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVS 327

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +   VA ++D   +R +HG+ +R     +DV +  A++DMY+K G ++ A  +F+    +
Sbjct: 328 VIPAVADISDPLQARWIHGYSIRH-QLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDR 386

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            VI+WN +I GY  +G    A+E+F+ M+    + PN+ T++S+L A SH G + +G K 
Sbjct: 387 HVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSL-PNETTFLSVLAACSHAGLVDEGQKY 445

Query: 356 HARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            A + K+  L   +     +VD+ G+ G++D+A S    +P
Sbjct: 446 FASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMP 486


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/708 (39%), Positives = 414/708 (58%), Gaps = 12/708 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA+  +++     G++PD YTFP VL+ C  + D   G+++H  V++ 
Sbjct: 166 LVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRY 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E D+ V  +L+ MY + G    AR LFD MP RD  SWNAMISGY ++G   E L + 
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLF 285

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             MR  G+S+DP  +T+ S++  C    +   G  IH Y++  G   ++ V N+L  MY 
Sbjct: 286 FAMR--GLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYL 343

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
             G  R A ++F +M  +D+VSW ++I+ YE +  P  A   +  M Q  ++PD +T+ +
Sbjct: 344 YAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAA 403

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S  A L D      +H   ++    +  VI+ N +++MY+K   I+ A  +F  +P K
Sbjct: 404 VLSACATLGDLDTGVELHKLAIK-ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +VISW ++I G   N    EA+  F+ M+    + PN  T  + L A + +GAL  G +I
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFFRQMKM--TLQPNAITLTAALAACARIGALMCGKEI 520

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA V++  +  D F+   L+DMY +CGR++ A + F    +  S  WN +++ +   GQG
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQKKDVS-SWNILLTGYSERGQG 579

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
              +  F +M+   VRPD ITF+SLL  C  S +V +G  YF  M EE+G+ P+LKHY C
Sbjct: 580 SVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKM-EEYGVTPNLKHYAC 638

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL GRAG L  AH FIQ MPV PD ++WGALL ACRIH N++LG +++ R+FE+D  +
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGS 698

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
           VGYY+L+ N+YA+ GKW  V +VR + ++ GL    G S +EV  KV  F + ++ HP+ 
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQT 758

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++I   L     KM  +G          D  E  ++ I   HSER AIAFG+I+S P  P
Sbjct: 759 KEINTVLDGFYEKMSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMP 818

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           I + KNL +C  CH+  KFIS+   REI VRDS  FHHFKDG CSCGD
Sbjct: 819 IWVTKNLNMCESCHDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 263/503 (52%), Gaps = 12/503 (2%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
            F  +++ C   R   +G K++   L       V +  + L M+ RFG    A  +F  M
Sbjct: 96  VFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKM 155

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSG 148
             R+  SWN ++ GY + G   EA+ +   M  + GV  D  T   +L  C    ++  G
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG 215

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H+++V++G E ++ V N LI MY K G ++ A  +FD+M  RD++SWN++I+ Y ++
Sbjct: 216 REVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFEN 275

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                    F  M+   + PDL+TL S+ S    L D R  R +H +++  G F  D+ +
Sbjct: 276 GMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG-FAVDISV 334

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N++  MY   G    A  +F  +  KD++SW T+I+GY  N L  +AI+ ++MM++ + 
Sbjct: 335 CNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQ-DS 393

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P++ T  ++L A + +G L  G+++H   IK  L   V VA  L++MY KC  ID A+
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKAL 453

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F+ +PR + + W +II+   ++ +  +AL FFRQM    ++P+ IT  + L AC+  G
Sbjct: 454 DIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAITLTAALAACARIG 512

Query: 449 LVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            +  G+  + H+++   G+   L +   ++D++ R G + +A N  Q    + D S W  
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPN--ALLDMYVRCGRMNIAWN--QFNSQKKDVSSWNI 568

Query: 508 LLGACRIHGNMELGAVASDRLFE 530
           LL      G   +     DR+ +
Sbjct: 569 LLTGYSERGQGSVVVELFDRMVK 591



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 206/420 (49%), Gaps = 13/420 (3%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           + G C +G   EA+ +L+ M+   V++D     +++ +C        G  ++   +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             ++ + N  + M+ +FG +  A  VF +M ER++ SWN ++  Y +      A   +  
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 221 MQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           M    G++PD+ T   +      + D    R VH  ++R G+ + D+ + NA++ MY K 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYEL-DIDVVNALITMYVKC 244

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G + SA  +F+ +P +D+ISWN +I+GY +NG+  E +++F  M   + ++P+  T  S+
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLS-VDPDLMTLTSV 303

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A   +G  R G  IHA VI      D+ V   L  MY   G   +A  LF ++     
Sbjct: 304 ISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDI 363

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W  +IS +  +   +KA++ +R M  + V+PD IT  ++L+AC+  G +  G      
Sbjct: 364 VSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVEL--- 420

Query: 460 MQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
              +  IK  L  Y      +++++ +   +  A +   N+P R +   W +++   R++
Sbjct: 421 --HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLN 477


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/739 (37%), Positives = 432/739 (58%), Gaps = 76/739 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR-NLVD--GKKIHCSVLKL 57
           M+  Y++     +A+   Y+  + + + PD YT+P V++AC   L++  GK+IH  VLK+
Sbjct: 112 MMRAYIQSNSAEKAL-LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKV 170

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V  +L++MY   G    ARKLFD+ PV DS SWN++++GY + G+  EA  I 
Sbjct: 171 GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIF 230

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D+M                                        + N+  SN++I +  K 
Sbjct: 231 DQMP---------------------------------------QRNIVASNSMIVLLGKM 251

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++F++M E+D+VSW+++I+ YEQ+     A   F  M   G++ D + +VS+ 
Sbjct: 252 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVL 311

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA-------------------- 277
           S  A L+  +  + +HG ++R G     V + NA++ MY+                    
Sbjct: 312 SACAHLSIVKTGKMIHGLVIRMG-IESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQ 370

Query: 278 -----------KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                      K G +  A A+F+ +P KD++SW+ +I+GYAQ+   SE + +F  M+  
Sbjct: 371 ISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQ-L 429

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
            +I P++   VS++ A +H+ AL QG  +HA + KN L  +V + T L+DMY KCG +++
Sbjct: 430 GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVEN 489

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A+ +F  +       WNA+I    ++G  +++L+ F +M + GV P+ ITF+ +L AC H
Sbjct: 490 ALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRH 549

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            GLV EG+ +F  M E+ GI+P++KHYGCMVDL GRAG L  A   I++MP+ PD + WG
Sbjct: 550 MGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWG 609

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALLGAC+ HG+ E+G     +L E+  ++ G++VL+SNI+A+ G WE V EVR + + +G
Sbjct: 610 ALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQG 669

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           + KTPG S IE N  V  F  G++THP   K+   L  +  ++K  GY PD + V  D++
Sbjct: 670 VVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDID 729

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  L  HSE+LAIAFG+++  P +PI+I KNLR+C DCH   K IS+   REI+VR
Sbjct: 730 EEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVR 789

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D +RFH+FK+G CSC DYW
Sbjct: 790 DRHRFHYFKEGACSCMDYW 808


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/767 (36%), Positives = 449/767 (58%), Gaps = 64/767 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  +++ GRL  A++   +  L +G R D +T P VLKAC  L     G   H  +   
Sbjct: 88  LIREHIKQGRLDSAINVSCRM-LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCN 146

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR---DSGSWNAMISGYCQSGNAVEAL 114
           GFE +VF+  +L+ MY R G    A  +FD++  R   D  SWN+++S + +S NA  AL
Sbjct: 147 GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTAL 206

Query: 115 DILDEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           D+  +M L           D I++ +ILP C     +     +H   +++G   ++FV N
Sbjct: 207 DLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN 266

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ----- 223
            LI+ YAK G+M +A++VF+ M  +DVVSWN+++A Y QS +   A   F  M++     
Sbjct: 267 ALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPL 326

Query: 224 ------------------------------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                         +G  P+ +T++S+ S  A L        +H
Sbjct: 327 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 386

Query: 254 GFIMRR---------GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNT 302
            + ++          G   ED+++ NA++DMY+K     +A ++F+ +P+  ++V++W  
Sbjct: 387 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 446

Query: 303 LITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           +I G+AQ G +++A+++F +M+ E   + PN  T   IL A +H+ A+R G +IHA V++
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 506

Query: 362 NCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           +   +D    FVA CL++MY KCG +D A  +F  + + S++ W ++++ +G+HG+G +A
Sbjct: 507 HHQ-YDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 565

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L+ F +M   G  PD ITF+ +L ACSH G+V +G  YF  M  ++G+ P  +HY   +D
Sbjct: 566 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAID 625

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L  R G L  A   +++MP+ P A +W ALL ACR+H N+EL   A ++L E+++EN G 
Sbjct: 626 LLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 685

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           Y L+SNIYA  G+W+ V  +R L +  G+KK PG S ++       F+ G+R+HP   +I
Sbjct: 686 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 745

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y  L +L  ++K++GYVP+ +F L DV+E+EK ++L  HSE+LA+A+G++++ P  PI+I
Sbjct: 746 YALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRI 805

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLRVCGDCH+   +IS+I + EI+VRD +RFHHFK+G CSCG YW
Sbjct: 806 TKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 233/479 (48%), Gaps = 62/479 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I  + + G    A+++   M   G  +D  T+  +L  C    +   G   H  I 
Sbjct: 85  WNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLIC 144

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPIT 213
            +G E N+F+ N L+ MY++ G +  A  +FD++ +R   DV+SWNSI++A+ +S++  T
Sbjct: 145 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 204

Query: 214 AHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           A   F+ M      +    + D++++V++      L     ++ VHG  +R G F+ DV 
Sbjct: 205 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL-DVF 263

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +GNA++D YAK G++ +A  VF  +  KDV+SWN ++ GY+Q+G    A E+F+ M + N
Sbjct: 264 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKEN 323

Query: 328 -----------------------EIN-----------PNQGTYVSILPAYSHVGALRQGI 353
                                   +N           PN  T +S+L A + +GA  QG+
Sbjct: 324 IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGM 383

Query: 354 KIHARVIKNCLCF----------DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVP 401
           +IHA  +KNCL            D+ V   L+DMY KC     A S+F  +P    + V 
Sbjct: 384 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 443

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQRY--F 457
           W  +I  H  +G  + AL  F +M+ E  GV P+  T   +L AC+H   +  G++   +
Sbjct: 444 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 503

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +   ++    +     C+++++ + G +  A +   +M  +   S W +++    +HG
Sbjct: 504 VLRHHQYDSSAYFVA-NCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHG 560



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 181/405 (44%), Gaps = 54/405 (13%)

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           +   ++  Y   G   +AL V +++     V WN +I  + +     +A      M +AG
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
            + D  TL  +     +L   R   + HG I   G F  +V I NA+V MY++ G +  A
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEA 171

Query: 286 CAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-----TYV 337
             +F+ +    + DVISWN++++ + ++  A  A+++F  M       P        + V
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF------ 391
           +ILPA   + A+ Q  ++H   I+N    DVFV   L+D Y KCG +++A+ +F      
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 392 ------------------------YQVPRSSSVP-----WNAIISCHGIHGQGDKALNFF 422
                                   ++  R  ++P     W A+I+ +   G   +ALN F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEG--------QRYFHMMQEEFGIKPH-LKHY 473
           RQM+  G  P+ +T +S+L+AC+  G  S+G        +     +  +FG +   L  Y
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRIHGN 517
             ++D++ +      A +   ++P+   +   W  ++G    +G+
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 456


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 414/711 (58%), Gaps = 11/711 (1%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-----CRNLVDGKKIHCSVL 55
            MI    + GR  EA   F Q    +G  P+  T+  +L A        L   K +H    
Sbjct: 392  MIGGLAQHGRGQEAFSLFLQMQ-RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAE 450

Query: 56   KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
            + GF  D+ +  +L+HMY + G  + AR +FD M  RD  SWNAM+ G  Q+G   EA  
Sbjct: 451  EAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFT 510

Query: 116  ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +  +M+ EG+  D  T  S+L     +D +     +H + V+ GL  +  V +  I+MY 
Sbjct: 511  VFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYI 570

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            + G +  A  +FD++  R V +WN++I    Q      A   F  MQ+ G  PD  T ++
Sbjct: 571  RCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFIN 630

Query: 236  LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
            + S           + VH      G  + D+ +GNA+V  Y+K G +  A  VF+ +  +
Sbjct: 631  ILSANVDEEALEWVKEVHSHATDAG--LVDLRVGNALVHTYSKCGNVKYAKQVFDDMVER 688

Query: 296  DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            +V +W  +I G AQ+G   +A   F QM+ E   I P+  TYVSIL A +  GAL    +
Sbjct: 689  NVTTWTMMIGGLAQHGCGHDAFSHFLQMLRE--GIVPDATTYVSILSACASTGALEWVKE 746

Query: 355  IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            +H   +   L  D+ V   LV MY KCG IDDA S+F  +       W  +I     HG+
Sbjct: 747  VHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGR 806

Query: 415  GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            G +AL+FF +M  EG +P+  ++V++LTACSH+GLV EG+R F  M +++GI+P ++HY 
Sbjct: 807  GLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYT 866

Query: 475  CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
            CMVDL GRAG L  A  FI NMP+ PD + WGALLGAC  +GN+E+   A+    ++  +
Sbjct: 867  CMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 926

Query: 535  NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
            +   YVL+SNIYA  GKWE    VRS+ + +G++K PG S IEV+N++  F  G+ +HP+
Sbjct: 927  SASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPE 986

Query: 595  YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
             ++IY +L +L  ++K+ GYVPD   VL++ +++ KE  L SHSE+LAI +G++ +  K 
Sbjct: 987  SKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKD 1046

Query: 655  PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            PI+++KNLRVC DCH  TKFIS+IT REI+ RD+ RFHHFKDG+CSCGDYW
Sbjct: 1047 PIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 290/609 (47%), Gaps = 32/609 (5%)

Query: 20  QFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           +  +  G+  D +++  +L+ C    +++  K++H  ++K G E +++VA  LL +Y R 
Sbjct: 107 KIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRC 166

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G    AR++FD +  ++   W  MI GY + G+A +A+ + D+MR E    + IT  SIL
Sbjct: 167 GRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSIL 226

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C    N+  G  IH +I++ G + ++ V   L+NMY K G +  A  +FD+M+ER+V+
Sbjct: 227 KACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVI 286

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW  +I           A   F  MQ+ G  P+  T VS+ +  A        + VH   
Sbjct: 287 SWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHA 346

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +  G  + D+ +GNA+V MYAK G I+ A  VF+G+  +D+ SW  +I G AQ+G   EA
Sbjct: 347 VNAGLAL-DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEA 405

Query: 317 IEVFQMMEECNEINPNQGTYVSIL--PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
             +F  M+  N   PN  TY+SIL   A +   AL     +H    +     D+ +   L
Sbjct: 406 FSLFLQMQR-NGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNAL 464

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           + MY KCG IDDA  +F  +     + WNA++     +G G +A   F QM  EG+ PD 
Sbjct: 465 IHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDS 524

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T++SLL     +  + E     H    E G+    +     + ++ R G +  A     
Sbjct: 525 TTYLSLLNTHGSTDAL-EWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFD 583

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE------NVGYYVLMSNIYAN 548
            + VR   + W A++G          G  A     ++  E           +L +N+   
Sbjct: 584 KLSVR-HVTTWNAMIGGA---AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEE 639

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT--GNRTHPKYEKIYDEL--RN 604
             +W  V EV S A D GL        + V N +   Y+  GN  + K  +++D++  RN
Sbjct: 640 ALEW--VKEVHSHATDAGL------VDLRVGNALVHTYSKCGNVKYAK--QVFDDMVERN 689

Query: 605 LTAKMKSLG 613
           +T     +G
Sbjct: 690 VTTWTMMIG 698



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 237/479 (49%), Gaps = 15/479 (3%)

Query: 98  NAMISGYC-QSGNAVEALDILDEMRL---EGVSMDPITVASILPVCARSDNILSGLLIHL 153
           NA + G   Q+ N + A D +  +++   +G+++D  +  +IL  C + ++IL    +H+
Sbjct: 83  NASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHV 142

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            I+K G+E NL+V+N L+ +Y + G ++ A +VFD+++++++  W ++I  Y +      
Sbjct: 143 CIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAED 202

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   +  M+Q   QP+ +T +S+        + +  + +H  I++ G F  DV +  A+V
Sbjct: 203 AMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG-FQSDVRVETALV 261

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           +MY K G I  A  +F+ +  ++VISW  +I G A  G   EA  +F  M+    I PN 
Sbjct: 262 NMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI-PNS 320

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            TYVSIL A +  GAL    ++H+  +   L  D+ V   LV MY K G IDDA  +F  
Sbjct: 321 YTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDG 380

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS-E 452
           +       W  +I     HG+G +A + F QM   G  P+  T++S+L A + +   + E
Sbjct: 381 MTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALE 440

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
             +  H   EE G    L+    ++ ++ + G +  A      M  R D   W A++G  
Sbjct: 441 WVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMMGGL 499

Query: 513 RIHGNMELGAVASDRLFEVDSENV----GYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
             +G    G  A     ++  E +      Y+ + N + +    E V+EV   A + GL
Sbjct: 500 AQNG---CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGL 555


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/687 (41%), Positives = 409/687 (59%), Gaps = 28/687 (4%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P+ YTFP  LKAC  L D   G+ IH   +  G + D+FV+ +LL MY +      A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSD 143
           F  MP RD  +WNAM++GY   G    A+  L  M+++   + P   T+ ++LP+ A+  
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 144 NILSGLLIHLYIVKHGLEFN----------LFVSNNLINMYAKFGMMRHALRVFDQMMER 193
            +  G  +H Y ++  L  N          + +   L++MYAK G + +A RVFD M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC------R 247
           + V+W+++I  +   +    A   F  M   G     L  +S TSI + L  C      R
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG-----LCFLSPTSIASALRACASLDHLR 242

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  + + G    D+  GN+++ MYAK G+I+ A A+F+ + VKD +S++ L++GY
Sbjct: 243 MGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            QNG A EA  VF+ M+ CN + P+  T VS++PA SH+ AL+ G   H  VI   L  +
Sbjct: 302 VQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             +   L+DMY KCGRID +  +F  +P    V WN +I+ +GIHG G +A   F +M +
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G  PD +TF+ LL+ACSHSGLV EG+ +FH+M   +G+ P ++HY CMVDL  R G L 
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A+ FIQ+MP+R D  +W ALLGACR++ N++LG   S  + E+  E  G +VL+SNIY+
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
             G+++   EVR + + +G KK+PG S IE+N  +  F  G+++HP+  +IY EL N+  
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            +K LGY PD SFVLQD+EE+EKE  L  HSE+LAIA+GI+S      I + KNLRVCGD
Sbjct: 601 GIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGD 660

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHF 694
           CH   K IS +  R IIVRD+NRFHHF
Sbjct: 661 CHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 14/196 (7%)

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           + + PN  T+   L A S +     G  IH   I   L  D+FV+T L+DMY KC  + D
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF--RQMLDEGVRPDHITFVSLLTAC 444
           A  +F  +P    V WNA+++ +  HG    A+      QM    +RP+  T V+LL   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYG----------CMVDLFGRAGHLGMAHNFIQ 494
           +  G +++G    H       + P+                ++D++ + G L  A     
Sbjct: 124 AQQGALAQGTS-VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 495 NMPVRPDASIWGALLG 510
            MP R + + W AL+G
Sbjct: 183 AMPARNEVT-WSALIG 197


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/708 (39%), Positives = 414/708 (58%), Gaps = 12/708 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y + G   EA+  +++     G++PD YTFP VL+ C  + D   GK++H  V++ 
Sbjct: 166 LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E D+ V  +L+ MY + G    AR LFD MP RD  SWNAMISGY ++G   E L++ 
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELF 285

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             MR  G+S+DP  +T+ S++  C    +   G  IH Y++  G   ++ V N+L  MY 
Sbjct: 286 FAMR--GLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYL 343

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
             G  R A ++F +M  +D+VSW ++I+ YE +  P  A   +  M Q  ++PD +T+ +
Sbjct: 344 NAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAA 403

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S  A L D      +H   ++    +  VI+ N +++MY+K   I+ A  +F  +P K
Sbjct: 404 VLSACATLGDLDTGVELHKLAIK-ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +VISW ++I G   N    EA+   + M+    + PN  T  + L A + +GAL  G +I
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFLRQMKM--TLQPNAITLTAALAACARIGALMCGKEI 520

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA V++  +  D F+   L+DMY +CGR++ A S F    +     WN +++ +   GQG
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF-NSQKKDVTSWNILLTGYSERGQG 579

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
              +  F +M+   VRPD ITF+SLL  CS S +V +G  YF  M E++G+ P+LKHY C
Sbjct: 580 SMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYAC 638

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL GRAG L  AH FIQ MPV PD ++WGALL ACRIH  ++LG +++  +FE+D ++
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKS 698

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
           VGYY+L+ N+YA+ GKW  V +VR + ++ GL    G S +EV  KV  F + ++ HP+ 
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQT 758

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++I   L     KM  +G          D  E  ++ I   HSER AIAFG+I++ P  P
Sbjct: 759 KEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMP 818

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           I + KNL +C +CH+  KFIS+   REI VRD+  FHHFKDG CSCGD
Sbjct: 819 IWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/502 (29%), Positives = 261/502 (51%), Gaps = 12/502 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           F  +++ C   R   +G K++   L       V +  + L M+ RFG    A  +F  M 
Sbjct: 97  FVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMS 156

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSGL 149
            R+  SWN ++ GY + G   EA+ +   M  + GV  D  T   +L  C    ++  G 
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGK 216

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H+++V++G E ++ V N LI MY K G ++ A  +FD+M  RD++SWN++I+ Y ++ 
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENG 276

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                   F  M+   + PDL+TL S+ S    L D R  R +H +++  G F  D+ + 
Sbjct: 277 MCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG-FAVDISVC 335

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N++  MY   G    A  +F  +  KD++SW T+I+GY  N L  +AI+ ++MM++ + +
Sbjct: 336 NSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQ-DSV 394

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  ++L A + +G L  G+++H   IK  L   V VA  L++MY KC  ID A+ 
Sbjct: 395 KPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALD 454

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F+ +PR + + W +II+   ++ +  +AL F RQM    ++P+ IT  + L AC+  G 
Sbjct: 455 IFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM-KMTLQPNAITLTAALAACARIGA 513

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +  G+  + H+++   G+   L +   ++D++ R G +  A  + Q    + D + W  L
Sbjct: 514 LMCGKEIHAHVLRTGVGLDDFLPN--ALLDMYVRCGRMNTA--WSQFNSQKKDVTSWNIL 569

Query: 509 LGACRIHGNMELGAVASDRLFE 530
           L      G   +     DR+ +
Sbjct: 570 LTGYSERGQGSMVVELFDRMVK 591



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 206/420 (49%), Gaps = 13/420 (3%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           + G C +G   EA+ +L+ M+   V++D     +++ +C        G  ++   +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
              + + N  + M+ +FG +  A  VF +M ER++ SWN ++  Y +      A   +  
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 221 MQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           M    G++PD+ T   +      + D    + VH  ++R G+ + D+ + NA++ MY K 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYEL-DIDVVNALITMYVKC 244

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G + SA  +F+ +P +D+ISWN +I+GY +NG+  E +E+F  M   + ++P+  T  S+
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLS-VDPDLMTLTSV 303

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A   +G  R G  IHA VI      D+ V   L  MY   G   +A  LF ++ R   
Sbjct: 304 ISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDI 363

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W  +IS +  +   DKA++ +R M  + V+PD IT  ++L+AC+  G +  G      
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVEL--- 420

Query: 460 MQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
              +  IK  L  Y      +++++ +   +  A +   N+P R +   W +++   R++
Sbjct: 421 --HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLN 477



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 12/222 (5%)

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           G   NG   EA+++   M+E   +  ++  +V+++       A  +G K+++  + +   
Sbjct: 68  GLCANGKLEEAMKLLNSMQEL-RVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSS 126

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             V +    + M+ + G + DA  +F ++   +   WN ++  +   G  D+A+  + +M
Sbjct: 127 LGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRM 186

Query: 426 L-DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           L   GV+PD  TF  +L  C     ++ G+   H+    +G +  +     ++ ++ + G
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGKE-VHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 485 HLGMAHNFIQNMPVRPDASIWGALL------GACRIHGNMEL 520
            +  A      MP R D   W A++      G C  H  +EL
Sbjct: 246 DVKSARLLFDRMP-RRDIISWNAMISGYFENGMC--HEGLEL 284


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/710 (37%), Positives = 424/710 (59%), Gaps = 10/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK-----ACRNLVDGKKIHCSVL 55
           +I  YV+  +L E VD F +     G   + + F  +LK      C  L     +H  + 
Sbjct: 12  LIQGYVQSFQLDEVVDLFSRVH-REGHELNPFVFTTILKLLVSVECAEL--AYSLHACIY 68

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           KLG E + FV  +L+  Y   G  N AR+ FD +  +D  SW  M++ Y ++    ++L 
Sbjct: 69  KLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQ 128

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  EMR+ G + +  T A +L  C   +    G  +H  ++K   E +L+V   L+++Y 
Sbjct: 129 LFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYT 188

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           KFG     LRVF++M + DV+ W+ +I+ Y QSN    A   F  M++A + P+  T  S
Sbjct: 189 KFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFAS 248

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    A + + +  + VH  +++ G    +V + NA++D+YAK G ++++  +F  LP +
Sbjct: 249 VLQSCASIENLQLGKQVHCHVLKVG-LDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNR 307

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           + ++WNT+I GY Q+G   +A+ +++ M EC ++  ++ TY S+L A + + A+  G +I
Sbjct: 308 NEVTWNTMIVGYVQSGDGDKALSLYKNMLEC-QVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H+  +K     DV V   L+DMY KCG I +A  +F  +     + WNA+IS + +HG  
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLV 426

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL  F+ M +    P+ +TFVS+L+ACS++GL+  GQ YF  M +++GI+P ++HY C
Sbjct: 427 GEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTC 486

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MV L GR+GHL  A   I+ +P+ P+  +W ALLGAC IH +++LG +++ ++ ++D ++
Sbjct: 487 MVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQD 546

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              +VL+SNIYA   +W  V  VR   +++G+KK PG S IE    V  F  G+ +HP  
Sbjct: 547 EATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDM 606

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           + I   L  L  K +  GYVPD + VL+DVE+DEK+  L  HSERLA+AFG+I +P +  
Sbjct: 607 KMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGH 666

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLR+C DCH+  K IS+I +R+II+RD NRFHHF+DGICSCGDYW
Sbjct: 667 IRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 246/482 (51%), Gaps = 6/482 (1%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP R++ S+  +I GY QS    E +D+   +  EG  ++P    +IL +    +     
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H  I K G E N FV   LI+ YA  G +  A + FD +  +D+VSW  ++A Y ++
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           +    +   F  M+  G  P+  T   +      L      +SVHG +++  + M D+ +
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM-DLYV 179

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           G  ++D+Y K G  N    VFE +P  DVI W+ +I+ YAQ+  + EA+E+F  M     
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF- 238

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + PNQ T+ S+L + + +  L+ G ++H  V+K  L  +VFV+  L+D+Y KCGR+D++M
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF ++P  + V WN +I  +   G GDKAL+ ++ ML+  V+   +T+ S+L AC+   
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            +  G +  H +  +      +     ++D++ + G +  A   + +M    D   W A+
Sbjct: 359 AMELGTQ-IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAM 416

Query: 509 LGACRIHGNMELGAVASDRLFEVDS-ENVGYYVLMSNIYANVGKWE-GVDEVRSLARDRG 566
           +    +HG +     A   + E +   N   +V + +  +N G  + G +  +S+ +D G
Sbjct: 417 ISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYG 476

Query: 567 LK 568
           ++
Sbjct: 477 IE 478


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/708 (39%), Positives = 414/708 (58%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y    R  EA   F Q     G R D  TF  +L AC N   L  GK +  S+ + 
Sbjct: 232 MISAYSISERSGEAFFIF-QRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET 290

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE D+FV  +L+ MY R      A ++F  M   +  +W+A+I+ +   G+  EAL   
Sbjct: 291 SFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYF 350

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+ EG+  + +T  S+L        +     IHL I +HGL+    + N L+N+Y + 
Sbjct: 351 RMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRC 410

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                A  VFDQ+   +++SWNS+I  Y Q      A   F TMQQ GIQPD +  +++ 
Sbjct: 411 ESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTIL 470

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 +  R  + VH  +   G      ++  ++V+MYAK G ++ A  + + +  + +
Sbjct: 471 GACTIGSHGRTRKLVHQCVEESG-LGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQI 529

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +WN LI GYA +G + EA+E +Q ++    I  ++ T++S+L A +   +L +G  IH+
Sbjct: 530 TAWNVLINGYALHGRSREALEAYQKLQ-LEAIPVDKVTFISVLNACTSSTSLAEGKMIHS 588

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++  L  DV V   L +MY KCG +++A  +F  +P  S+V WN ++  +  HG+ ++
Sbjct: 589 NAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEE 648

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L   R+M  EGV+ + ITFVS+L++CSH+GL++EG +YFH +  + GI+   +HYGC+V
Sbjct: 649 VLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLV 708

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A  +I  MP+ P    W +LLGACR+  +++ G +A+ +L E+D  N  
Sbjct: 709 DLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSS 768

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             V++SNIY+  G W+   ++R     R +KK PG SSI+V NKV  F   + +HP+  +
Sbjct: 769 ASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAE 828

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IYD++  L   M+  GYVPD   VL DV+E++KE +L  HSE+LAIAFG+IS+P  S + 
Sbjct: 829 IYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLH 888

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IFKNLRVC DCH  TKFIS+IT REI+VRD++RFHHF+DG CSC DYW
Sbjct: 889 IFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 176/613 (28%), Positives = 302/613 (49%), Gaps = 27/613 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MIS Y       EA+  F+   L  G+ P+  T   VL +C   R L DG  +H   L+ 
Sbjct: 29  MISAYSSYKSFQEALALFHAMLL-EGVAPNAITLVAVLNSCGSFRELRDGILVHALSLER 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE-ALDI 116
           GF  +  VA +LL+MY + G    A+ +F++M  ++  +WNAM+  Y   G   + A+++
Sbjct: 88  GFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVEL 147

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M LEGV  + IT  ++L      D +  G  IH  + +     ++FV+  L+N Y K
Sbjct: 148 FTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTK 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A +VFD M  R V +WNS+I+AY  S     A   F  MQQ G + D +T +S+
Sbjct: 208 CGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSI 267

Query: 237 TSIVAQLNDCRNSRSV-HGFIMRRGW----FMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                 L+ C N  ++ HG  +R       F  D+ +G A++ MYA+      A  VF  
Sbjct: 268 ------LDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGR 321

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +   ++I+W+ +IT +A +G   EA+  F+MM++   I PN+ T++S+L  ++    L +
Sbjct: 322 MKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ-EGILPNRVTFISLLNGFTTPSGLEE 380

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
             +IH  + ++ L     +   LV++YG+C   DDA ++F Q+   + + WN++I  +  
Sbjct: 381 LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQ 440

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
             + D AL  FR M  +G++PD + F+++L AC+  G     ++  H   EE G+     
Sbjct: 441 CERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPL 499

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLF 529
               +V+++ +AG L +A   +Q M      + W  L+    +HG     L A    +L 
Sbjct: 500 VQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLE 558

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
            +  + V +  +++   ++    EG   + S A + GL      S + V N +   Y+  
Sbjct: 559 AIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLD-----SDVIVKNALTNMYSKC 612

Query: 590 RTHPKYEKIYDEL 602
            +     +I+D +
Sbjct: 613 GSMENARRIFDSM 625



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 163/560 (29%), Positives = 275/560 (49%), Gaps = 10/560 (1%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLL 70
           AV+ F +  L  G++ +  TF  VL +  +   L  GK IH  V +     DVFV  +L+
Sbjct: 144 AVELFTRMLL-EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALV 202

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI 130
           + Y + G    ARK+FD MP R  G+WN+MIS Y  S  + EA  I   M+ EG   D +
Sbjct: 203 NTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRV 262

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T  SIL  C   + +  G  +   I +   E +LFV   LI MYA+      A +VF +M
Sbjct: 263 TFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRM 322

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            + ++++W++II A+        A  +F  MQQ GI P+ +T +SL +     +      
Sbjct: 323 KQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELS 382

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H  I   G   +   + NA+V++Y +    + A  VF+ L + ++ISWN++I  Y Q 
Sbjct: 383 RIHLLITEHG-LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQC 441

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
               +A+++F+ M++   I P++  +++IL A +     R    +H  V ++ L     V
Sbjct: 442 ERHDDALQLFRTMQQ-QGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLV 500

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T LV+MY K G +D A  +  ++       WN +I+ + +HG+  +AL  ++++  E +
Sbjct: 501 QTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAI 560

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             D +TF+S+L AC+ S  ++EG +  H    E G+   +     + +++ + G +  A 
Sbjct: 561 PVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENAR 619

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEVDSENVGYYVLMSNIYAN 548
               +MP+R   S W  +L A   HG  E  L  +       V    + +  ++S+    
Sbjct: 620 RIFDSMPIRSAVS-WNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHA 678

Query: 549 VGKWEGVDEVRSLARDRGLK 568
               EG     SL  DRG++
Sbjct: 679 GLIAEGCQYFHSLGHDRGIE 698



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 229/440 (52%), Gaps = 5/440 (1%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY R G    A   F  +  R+  SWN MIS Y    +  EAL +   M LEGV+ + IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + ++L  C     +  G+L+H   ++ G   N  V+  L+NMY K G +  A  VF++M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 192 ERDVVSWNSIIAAYE-QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           E++VV+WN+++  Y  Q      A   FT M   G++ +++T +++ + V   +  R  +
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H  + R      DV +  A+V+ Y K G +  A  VF+G+P + V +WN++I+ Y+ +
Sbjct: 181 FIHSCV-RESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
             + EA  +FQ M++  E   ++ T++SIL A  +   L+ G  +   + +     D+FV
Sbjct: 240 ERSGEAFFIFQRMQQEGE-RCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFV 298

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L+ MY +C   +DA  +F ++ +++ + W+AII+    HG   +AL +FR M  EG+
Sbjct: 299 GTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            P+ +TF+SLL   +    + E  R  H++  E G+         +V+++GR      A 
Sbjct: 359 LPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR 417

Query: 491 NFIQNMPVRPDASIWGALLG 510
                + + P+   W +++G
Sbjct: 418 TVFDQLEL-PNLISWNSMIG 436


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/648 (41%), Positives = 400/648 (61%), Gaps = 12/648 (1%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D FVA++L  +Y      + ARK+FD +P  D+  WN +++G   S    EA++    M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 122 LEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            +G V  D  T+AS+LP  A   ++  G  +H +  K GL  +  V   LI++Y+K G +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +FD M + D+V++N++I+ Y  +    ++   FT +   G+ P+  TLV+L  + 
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           +       ++ +HGF+++ G F  +  +  A+  ++ +L  + SA   F+ +P K + SW
Sbjct: 324 SPFGHDLLAQCLHGFVLKSG-FTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESW 382

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +I+GYAQNGL   A+ +F+ M + N + PN  T  S L A + +GAL  G  +H  + 
Sbjct: 383 NAMISGYAQNGLTEMAVALFEQMVKLN-VRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           +  L  +V+V T L+DMY KCG I +A  +F  +   + V WNA+I+ +G+HGQG +AL 
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            ++ MLD  + P   TF+S+L ACSH GLV EG + F  M +++ I P ++H  CMVDL 
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLL 561

Query: 481 GRAGHLGMAHNFIQNMP---VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           GRAG L  A   I   P   V P   +WGALLGAC +H + +L  +AS +LFE+D EN G
Sbjct: 562 GRAGQLKEAFELISEFPKSAVGP--GVWGALLGACMVHKDSDLAKLASQKLFELDPENSG 619

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SN++ +  ++     VR  A+ R L KTPG++ IE+ NK  +F  G+R HP+ E 
Sbjct: 620 YYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEA 679

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  LTAKM   GY P+    L DVEE+EKEH++  HSE+LAIAFG++S+ P + I+
Sbjct: 680 IYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIR 739

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCHN TKFIS++T+R I+VRD++RFHHF+DG+CSCGDYW
Sbjct: 740 IIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 211/413 (51%), Gaps = 8/413 (1%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
           SEAV+ F +      +RPD  T   VL A   + D   G+ +H    K G      V   
Sbjct: 193 SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTG 252

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+ +Y + G    AR LFD M   D  ++NA+ISGY  +G    ++++  E+   G+  +
Sbjct: 253 LISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPN 312

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ +++PV +   + L    +H +++K G   N  VS  +  ++ +   M  A + FD
Sbjct: 313 SSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFD 372

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M E+ + SWN++I+ Y Q+     A   F  M +  ++P+ +T+ S  S  AQL     
Sbjct: 373 TMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSL 432

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H  I        +V +  A++DMYAK G I+ A  +F  +  K+V+SWN +I GY 
Sbjct: 433 GKWLHRIITEED-LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYG 491

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFD 367
            +G  +EA+++++ M + + + P   T++S+L A SH G + +G K+   +  +  +   
Sbjct: 492 LHGQGAEALKLYKDMLDAHLL-PTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPG 550

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIISCHGIHGQGDKA 418
           +   TC+VD+ G+ G++ +A  L  + P+S+  P  W A++    +H   D A
Sbjct: 551 IEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLA 603


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 442/768 (57%), Gaps = 64/768 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  +++ G L  A+    +  L +G +PD +T P  LKAC  L     G+ +H  +   
Sbjct: 120 LVREHIKEGHLDRAIGVSCRM-LRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCN 178

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEAL 114
           GFE +VFV  +L+ MY R G    A  +FD++    + D  SWN++++ + +  N   AL
Sbjct: 179 GFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTAL 238

Query: 115 DILDEMRL------EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           ++  EM +           D I++ +ILP CA    +     IH Y +++G   + FV N
Sbjct: 239 ELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCN 298

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI-- 226
            LI+ YAK G M  A++VF+ M  +DVVSWN+++  Y QS +   A   F  M++  I  
Sbjct: 299 ALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPL 358

Query: 227 ---------------------------------QPDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                            +P+ +T++SL S  A L        +H
Sbjct: 359 DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIH 418

Query: 254 GFIMRRGWF-----------MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISW 300
            + +++               ED+++ NA++DMY+K     +A ++F+ +P ++  V++W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTW 478

Query: 301 NTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
             +I GYAQ G +++A+++F +M+ +   + PN  T   IL A +H+ ALR G +IHA V
Sbjct: 479 TVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYV 538

Query: 360 IKNCLCFD--VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++        FVA CL+DMY KCG +D A ++F  +P+ + V W +++S +G+HG+G +
Sbjct: 539 TRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKE 598

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F +M   G  PD I+F+ LL ACSHSG+V +G  YF +M+ ++ +    +HY C++
Sbjct: 599 ALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVI 658

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G L  A   IQ MP+ P A IW ALL ACR+H N+EL   A ++L  + +EN G
Sbjct: 659 DLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDG 718

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y L+SNIYAN  +W+ V  +R L +  G+KK PG S ++       F+ G+R+HP   +
Sbjct: 719 SYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPE 778

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY  L  L  ++K +GYVP+ +F L DV+++EK ++L+ HSE+LA+A+G++++ P  PI+
Sbjct: 779 IYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIR 838

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH+   +IS+I + EIIVRDS+RFHHFK+G CSCG YW
Sbjct: 839 ITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 147/563 (26%), Positives = 253/563 (44%), Gaps = 82/563 (14%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLG--------------------FEWDVFVAASLLHMY 73
           F  +LK CR++   ++IH  ++  G                    +     +   ++  Y
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASY 93

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
              G    A  + + +    +  WN ++  + + G+   A+ +   M   G   D  T+ 
Sbjct: 94  LACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLP 153

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
             L  C    +   G  +H  I  +G E N+FV N L+ MY++ G +  A  VFD++  +
Sbjct: 154 YALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRK 213

Query: 194 ---DVVSWNSIIAAYEQSNDPITAHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLN 244
              DV+SWNSI+AA+ + ++P TA   F+ M      +    + D++++V++    A L 
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLK 273

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + +H + +R G F  D  + NA++D YAK G +N A  VF  +  KDV+SWN ++
Sbjct: 274 ALPQIKEIHSYAIRNGTF-ADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMV 332

Query: 305 TGYAQNGLASEAIEVFQMMEE---------------------CNE-------------IN 330
           TGY Q+G    A E+F+ M +                     C++               
Sbjct: 333 TGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSE 392

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC------------FDVFVATCLVDMY 378
           PN  T +S+L A + +GAL QG++IHA  +K CL              D+ V   L+DMY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMY 452

Query: 379 GKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDH 434
            KC     A S+F  +PR     V W  +I  +  +G  + AL  F +M+ +   V P+ 
Sbjct: 453 SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNA 512

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-CMVDLFGRAGHLGMAHNFI 493
            T   +L AC+H   +  G++    +      +P +     C++D++ + G +  A N  
Sbjct: 513 YTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 494 QNMPVRPDASIWGALLGACRIHG 516
            +MP R + S W +++    +HG
Sbjct: 573 DSMPKRNEVS-WTSMMSGYGMHG 594


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/784 (36%), Positives = 423/784 (53%), Gaps = 108/784 (13%)

Query: 29  PDFYTFPPVLKACRNLVD-----------GKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           P   +   +L+ C NL+             + +HC V+K G  + V++  +L+++Y + G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 78  LANVARKLFDDMPVR-------------------------------DSGSWNAMISGYCQ 106
            A  ARKLFD+MP+R                               DS SW  MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            G   +A+ I+ EM  EG+     T+ ++L   A +  + +G  +H +IVK GL  N+ V
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183

Query: 167 SNNLINMYAK-------------------------------FGMMRHALRVFDQMMERDV 195
           SN+L+NMYAK                                G M  A+  F+QM ERD+
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           V+WNS+I+ Y Q    + A   F+ M + + + PD  TL S+ S  A L        +H 
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 255 FIMRRGWFMEDVIIG--------------------------------NAVVDMYAKLGII 282
            I+  G+ +  +++                                  A++D Y KLG +
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           N A  +F+ L  +DV++W  +I GY Q+GL  EAI +F+ M    E  PN  T  ++L  
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMV-GEEQRPNSYTLAAMLSV 422

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
            S + +L  G +IH   +K+   + V V+  L+ MY K G I  A   F  +     +V 
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS 482

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W ++I     HG  ++AL  F  ML EG+RPDHIT+V + +AC+H+GLV++G++YF MM+
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +   I P L HY CMVDLFGRAG L  A  FI+ MP+ PD   WG+LL ACR++ N++LG
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
            VA++RL  ++ EN G Y  ++N+Y+  GKWE   ++R   +D  +KK  G+S IEV +K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F   +  HP+  +IY  ++ +  ++K +GYVPD + VL D+EE+ KE IL  HSE+L
Sbjct: 663 VHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKL 722

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           AIAFG+IS+P K+ ++I KNLRVC DCH   KFIS++  REIIVRD+ RFHHFKDG CSC
Sbjct: 723 AIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSC 782

Query: 702 GDYW 705
            DYW
Sbjct: 783 RDYW 786



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 173/396 (43%), Gaps = 46/396 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G    A+D F +    S L PD +T   VL AC NL     G++IH  ++  
Sbjct: 249 MISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTT 308

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKL-------------------------------- 85
           GF+    V  +L+ MY R G    AR+L                                
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKN 368

Query: 86  -FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
            FD +  RD  +W AMI GY Q G   EA+++   M  E    +  T+A++L V +   +
Sbjct: 369 IFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLAS 428

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIA 203
           +  G  IH   VK G  +++ VSN LI MYAK G +  A R FD +  ERD VSW S+I 
Sbjct: 429 LGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMII 488

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   F TM   G++PD +T V + S           R     +      +
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKII 548

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
             +     +VD++ + G++  A    E +P++ DV++W +L++    Y    L   A E 
Sbjct: 549 PTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAER 608

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
             ++E       N G Y ++   YS  G   +  KI
Sbjct: 609 LLLLEP-----ENSGAYSALANLYSACGKWEEAAKI 639


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 429/709 (60%), Gaps = 9/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS  ++ G   +A+D F      + L  + YT   VL+ C  L     G+++H ++LK 
Sbjct: 237 MISGCLQNGMFLQALDLFRGMQ-RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS 295

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E ++   A LL MY + G  + A ++F ++  +D  SWN+M+S Y Q+G   EA++ +
Sbjct: 296 GSEVNIQCNA-LLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFI 354

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G   D   + S+         +L+G  +H Y +K  L+ +  V N L++MY K 
Sbjct: 355 SEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKC 414

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             + ++  VFD+M  +D +SW +II  Y QS+  I A   F   Q+ GI+ D + + S+ 
Sbjct: 415 RYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSIL 474

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L     ++ +H + +R G    D+++ N ++D+Y + G +  +  +FE +  KD+
Sbjct: 475 EACSGLETILLAKQLHCYAIRNGLL--DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDI 532

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W ++I  YA +GL +EA+ +F  M+   ++ P+    VSIL A   + +L +G ++H 
Sbjct: 533 VTWTSMINCYANSGLLNEALVLFAEMQS-TDVQPDSVALVSILGAIGGLSSLAKGKEVHG 591

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  + + LVDMY  CG +  A+ +F  V     V W A+I+  G+HG G +
Sbjct: 592 FLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQ 651

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F++ML  GV PDH++F++LL ACSHS LV+EG+ Y  MM   + ++P  +HY C+V
Sbjct: 652 AIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVV 711

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G    A+ FI++MP++P + +W +LLGACR+H N EL  VA++RL E++ +N G
Sbjct: 712 DLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPG 771

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN++A +GKW    EVR+   +RGL+K P  S IE+ N V  F T + +H   E+
Sbjct: 772 NYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAER 831

Query: 598 IYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           I  +L  +T ++ K  GY  D   VL DV E+EK  +L  HSERLAI+FG+I++ P  P+
Sbjct: 832 INLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPL 891

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCH +TK +S++ +R+I+VRD+NRFHHF  G CSCGD+W
Sbjct: 892 RIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  253 bits (645), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 175/559 (31%), Positives = 290/559 (51%), Gaps = 32/559 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLT--SGLRPDFYTFPPVLKACRNLVDGK---KIHCSVL 55
           +I  Y+  G   EA+  +    L+  SG+ PD  T   VLKA     DG+   ++H   +
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEAL 114
           K G +   FVA +L+ MY + G+ + A ++F+ M   RD  SWN+MISG  Q+G  ++AL
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D+   M+   +SM+  T   +L VC     +  G  +H  ++K G E N+   N L+ MY
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI-QCNALLVMY 310

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G +  ALRVF ++ E+D +SWNS+++ Y Q+     A  F + M + G QPD   +V
Sbjct: 311 TKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIV 370

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           SL+S V  L    N + VH + +++     D  +GN ++DMY K   I  +  VF+ + +
Sbjct: 371 SLSSAVGHLGWLLNGKEVHAYAIKQR-LDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRI 429

Query: 295 KDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           KD ISW T+IT YAQ+    EA+E+F +  +E  +++P      SIL A S +  +    
Sbjct: 430 KDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMM--IGSILEACSGLETILLAK 487

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++H   I+N L  D+ V   ++D+YG+CG +  ++ +F  V +   V W ++I+C+   G
Sbjct: 488 QLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSG 546

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ--------RYFHMMQEEFG 465
             ++AL  F +M    V+PD +  VS+L A      +++G+        R FHM  EE  
Sbjct: 547 LLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM--EEAI 604

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           +         +VD++   G L  A      +  + D  +W A++ A  +HG+ +      
Sbjct: 605 VSS-------LVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGKQAIDLF 656

Query: 526 DRLFE--VDSENVGYYVLM 542
            R+ +  V  ++V +  L+
Sbjct: 657 KRMLQTGVTPDHVSFLALL 675



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 221/415 (53%), Gaps = 9/415 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLG-FEWD-VFVAASLLHMYCRFGLANVARKLFDDMPVRDS 94
           ++ A + +  G ++H   +  G  E D  F+A  LL MY + G    AR LFD M  R  
Sbjct: 67  LVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTV 126

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRL---EGVSMDPITVASILPVCARSDNILSGLLI 151
            SWNA+I  Y  SG+A EAL +   MRL    GV+ D  T+AS+L       +   G  +
Sbjct: 127 FSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEV 186

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSND 210
           H   VKHGL+ + FV+N LI MYAK G++  A+RVF+ M + RDV SWNS+I+   Q+  
Sbjct: 187 HGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGM 246

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            + A   F  MQ+A +  +  T V +  +  +L      R +H  +++ G   E  I  N
Sbjct: 247 FLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVNIQCN 304

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A++ MY K G ++SA  VF  +  KD ISWN++++ Y QNGL +EAIE    M       
Sbjct: 305 ALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR-GGFQ 363

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+    VS+  A  H+G L  G ++HA  IK  L  D  V   L+DMY KC  I+ +  +
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHV 423

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           F ++     + W  II+C+    +  +AL  FR+   EG++ D +   S+L ACS
Sbjct: 424 FDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 16/245 (6%)

Query: 220 TMQQAGIQPD------LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-EDVIIGNAV 272
           T Q  G  P       +L LV+    VAQ         VH   +  G    +D  +   +
Sbjct: 48  TSQTPGRSPPQEHYGWVLDLVAAKKAVAQ------GVQVHAHAVATGSLEGDDGFLATKL 101

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME--ECNEIN 330
           + MY K G +  A  +F+G+  + V SWN LI  Y  +G A EA+ V++ M     + + 
Sbjct: 102 LFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVA 161

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+  T  S+L A    G  R G ++H   +K+ L    FVA  L+ MY KCG +D AM +
Sbjct: 162 PDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRV 221

Query: 391 FYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           F  +     V  WN++IS    +G   +AL+ FR M    +  +  T V +L  C+    
Sbjct: 222 FELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQ 281

Query: 450 VSEGQ 454
           ++ G+
Sbjct: 282 LNLGR 286



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 21/268 (7%)

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDA 387
           +P Q  Y  +L   +   A+ QG+++HA  +        D F+AT L+ MYGKCGR+ DA
Sbjct: 55  SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADA 114

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM---LDEGVRPDHITFVSLLTAC 444
             LF  +   +   WNA+I  +   G   +AL  +R M      GV PD  T  S+L A 
Sbjct: 115 RLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA- 173

Query: 445 SHSGLVSEGQ--RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
             SG+  +G+     H +  + G+         ++ ++ + G L  A    + M    D 
Sbjct: 174 --SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDV 231

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           + W +++  C +   M L A+    LF      +   VL  N Y  VG  +   E+  L 
Sbjct: 232 ASWNSMISGC-LQNGMFLQAL---DLF----RGMQRAVLSMNSYTTVGVLQVCTELAQLN 283

Query: 563 RDRGLKKTPGWSSIEVN---NKVDIFYT 587
             R L      S  EVN   N + + YT
Sbjct: 284 LGRELHAALLKSGSEVNIQCNALLVMYT 311


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/657 (40%), Positives = 404/657 (61%), Gaps = 3/657 (0%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +IH  ++  G + + F+   L++     G    ARKLFD+    D   WNA+I  Y ++ 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              + +++   MR  GV  D  T   +L  C    +     +IH  I+K+G   ++FV N
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L+ +YAK G +  A  VFD +  R +VSW SII+ Y Q+   + A   F+ M+  G++P
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP 253

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D + LVS+      ++D    RS+HGF+++ G   E  ++  ++   YAK G++  A + 
Sbjct: 254 DWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALL-ISLTAFYAKCGLVTVAKSF 312

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ +   +VI WN +I+GYA+NG A EA+ +F  M   N I P+  T  S + A + VG+
Sbjct: 313 FDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN-IKPDSVTVRSAVLASAQVGS 371

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L     +   V K+    D+FV T L+DMY KCG ++ A  +F +      V W+A+I  
Sbjct: 372 LELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMG 431

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +G+HGQG +A+N +  M   GV P+ +TF+ LLTAC+HSGLV EG   FH M++ F I P
Sbjct: 432 YGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVP 490

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
             +HY C+VDL GRAG+LG A  FI  +P+ P  S+WGALL AC+I+  + LG  A+++L
Sbjct: 491 RNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKL 550

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
           F +D  N G+YV +SN+YA+   W+ V  VR L R++GL K  G+S IE+N K+  F+ G
Sbjct: 551 FSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVG 610

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           +++HP  ++I+DEL+ L  ++K +G+VP    VL D+  +EKE  L+ HSER+A+A+G+I
Sbjct: 611 DKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLI 670

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+ P + ++I KNLR C +CH+  K IS++ EREIIVRD+NRFHHFKDG+CSCGDYW
Sbjct: 671 STAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 226/420 (53%), Gaps = 15/420 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y R     + V+  Y++   +G+ PD +TFP VLKAC  L+D      IH  ++K 
Sbjct: 125 IIRSYSRNNMYRDTVE-MYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKY 183

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DVFV   L+ +Y + G   VA+ +FD +  R   SW ++ISGY Q+G AVEAL + 
Sbjct: 184 GFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMF 243

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR  GV  D I + SIL      D++  G  IH +++K GLE    +  +L   YAK 
Sbjct: 244 SQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKC 303

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A   FDQM   +V+ WN++I+ Y ++     A   F  M    I+PD +T+ S  
Sbjct: 304 GLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAV 363

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              AQ+     ++ +  ++ +   +  D+ +  +++DMYAK G +  A  VF+    KDV
Sbjct: 364 LASAQVGSLELAQWMDDYVSKSN-YGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDV 422

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W+ +I GY  +G   EAI ++ +M++   + PN  T++ +L A +H G +++G ++  
Sbjct: 423 VMWSAMIMGYGLHGQGWEAINLYHVMKQAG-VFPNDVTFIGLLTACNHSGLVKEGWELF- 480

Query: 358 RVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
             +K+   F++       +C+VD+ G+ G + +A +   ++P    V  W A++S   I+
Sbjct: 481 HCMKD---FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIY 537


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/699 (38%), Positives = 430/699 (61%), Gaps = 9/699 (1%)

Query: 11  LSEAVDCFYQFTLT-SGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASL 69
           +SEA      F  T SG+  D + +  ++ +  +    ++IH  +L LG ++  F+   L
Sbjct: 1   MSEASCLASPFLYTNSGIHSDSF-YASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKL 59

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           +H    +G    AR++FDD+P      WNA+I GY ++ +  +AL +  +M+L  VS D 
Sbjct: 60  IHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDS 119

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD- 188
            T   +L  C    ++  G  +H  + + G E ++FV N LI +YAK   +  A  VF+ 
Sbjct: 120 FTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEG 179

Query: 189 -QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
             + ER +VSW +I++AY Q+ +P+ A   F+ M++  ++PD + LVS+ +    L D  
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239

Query: 248 NSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
             RS+H  +M+ G   E D++I  ++  MYAK G + +A  +F+ +   ++I WN +I+G
Sbjct: 240 QGRSIHASVMKMGLETEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YA+NG A +AI++F  M    ++ P+  +  S + A + VG+L Q   +   V ++    
Sbjct: 298 YAKNGFAKDAIDLFHEMIN-KDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DVF+++ L+DM+ KCG ++ A S+F +      V W+A+I  +G+HGQ  +A++ +R M 
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            +GV P+ +TF+ LL AC+HSG+V EG  +F+ M +   I P  +HY C++DL GRAGHL
Sbjct: 417 RDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADH-KINPQQQHYACIIDLLGRAGHL 475

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A+  I+ MPV+P  ++WGALL AC+ H ++ELG  A+ +LF +D  N G+YV +SN+Y
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A    W+ V EVR   +++GL K  G S +EV  +++ F  G+++HP+YE+I  ++  + 
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIE 595

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
           +++K  G+V +K   L D+ ++E E  L SHSER+ IA+G+IS+P  + ++I KNLR C 
Sbjct: 596 SRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACV 655

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +CH  TK IS++  REI+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 656 NCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 5/208 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y + G   +A+D F++  +   +RPD  +    + AC    +L   + +   V + 
Sbjct: 294 MISGYAKNGFAKDAIDLFHEM-INKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS 352

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVF++++L+ M+ + G    AR +FD    RD   W+AMI GY   G A EA+ + 
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY 412

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  +GV  + +T   +L  C  S  +  G      +  H +         +I++  + 
Sbjct: 413 RAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRA 472

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAA 204
           G +  A  V   M ++  V  W ++++A
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/704 (38%), Positives = 417/704 (59%), Gaps = 19/704 (2%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
           L EAV  FY    T  +R + + F  ++ A  +L D   G+ IH  V K GFE D+ ++ 
Sbjct: 71  LQEAVQLFYLMRHTR-IRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISN 129

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           + + MY +        + F  M + +  S N ++SG+C +    +   IL ++ +EG   
Sbjct: 130 AFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEP 189

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           +  T  SIL  CA   ++  G  IH  ++K G+  +  + N+L+N+YAK G   +A +VF
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 249

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGF------FTTMQQAGIQPDLLTLVSLTSIVA 241
            ++ ERDVVSW ++I  +        A G+      F  M   G  P++ T +S+    +
Sbjct: 250 GEIPERDVVSWTALITGF-------VAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCS 302

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L+D    + VH  I++      D  +G A+VDMYAK   +  A  +F  L  +D+ +W 
Sbjct: 303 SLSDVDLGKQVHAQIVKNSLDGND-FVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            ++ GYAQ+G   +A++ F  M+    + PN+ T  S L   S +  L  G ++H+  IK
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 420

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                D+FVA+ LVDMY KCG ++DA  +F  +    +V WN II  +  HGQG KAL  
Sbjct: 421 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 480

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F  MLDEG  PD +TF+ +L+ACSH GL+ EG+++F+ + + +GI P ++HY CMVD+ G
Sbjct: 481 FEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 540

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG      +FI+ M +  +  IW  +LGAC++HGN+E G  A+ +LFE++ E    Y+L
Sbjct: 541 RAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL 600

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN++A  G W+ V  VR+L   RG+KK PG S +EVN +V +F + + +HPK  +I+ +
Sbjct: 601 LSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLK 660

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L++L  K+ S+GY P+   VL +V + EK+ +L  HSERLA+AF ++S+  +  I+IFKN
Sbjct: 661 LQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKN 720

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LR+CGDCH++ K IS+IT +E++VRD N FHHFK+G CSC ++W
Sbjct: 721 LRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/692 (39%), Positives = 421/692 (60%), Gaps = 11/692 (1%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF-EWDVFVAASLLHMYCR-FG 77
           L  G  P+ Y F  V++AC N      G+ I+  V+K G+ E DV V   L+ M+ +  G
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               A K+FD MP R+  +W  MI+ + Q G A +A+D+  +M L G   D  T +S+L 
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERD 194
            C     +  G  +H  +++ GL  ++ V  +L++MYAK    G +  + +VF+QM E +
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 195 VVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           V+SW +II AY QS +    A   F  M    I+P+  +  S+      L+D      V+
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            + ++ G    + + GN+++ MYA+ G +  A   F+ L  K+++S+N ++ GYA+N  +
Sbjct: 378 SYAVKLGIASVNCV-GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 436

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA  +F  + +   I  +  T+ S+L   + +GA+ +G +IH R++K     +  +   
Sbjct: 437 EEAFLLFNEIADTG-IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 495

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY +CG I+ A  +F ++   + + W ++I+    HG   +AL  F +ML+ G +P+
Sbjct: 496 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 555

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            IT+V++L+ACSH G++SEGQ++F+ M +E GI P ++HY CMVDL GR+G L  A  FI
Sbjct: 556 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 615

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
            +MP+  DA +W  LLGACR+HGN ELG  A++ + E + ++   Y+L+SN++A+ G+W+
Sbjct: 616 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 675

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V ++R   ++R L K  G S IEV N+V  F+ G  +HP+  +IY EL  L +K+K +G
Sbjct: 676 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 735

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           Y+PD  FVL D+EE++KE  L  HSE++A+AFG+IS+    PI+IFKNLRVCGDCH   K
Sbjct: 736 YIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIK 795

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS  T REI+VRDSNRFHH K+G+CSC DYW
Sbjct: 796 YISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/571 (27%), Positives = 279/571 (48%), Gaps = 17/571 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           GRL  A       T  +   PD  T+  +LK+C   RN   GK +H  +++ G E D  V
Sbjct: 23  GRLHHAFSTLDLMTQQNA-PPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 81

Query: 66  AASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
             +L+ +Y + G    AR +F+ M   RD  SW+AM+S +  +    +A+    +M   G
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAK-FGMMRH 182
              +    A+++  C+ ++    G +I+ ++VK G LE ++ V   LI+M+ K  G +  
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A +VFD+M ER++V+W  +I  + Q      A   F  M+ +G  PD  T  S+ S   +
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL---GIINSACAVFEGLPVKDVIS 299
           L      + +H  ++R G  + DV +G ++VDMYAK    G ++ +  VFE +P  +V+S
Sbjct: 262 LGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 320

Query: 300 WNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           W  +IT Y Q+G    EAIE+F  M     I PN  ++ S+L A  ++     G ++++ 
Sbjct: 321 WTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 379

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  +     V   L+ MY + GR++DA   F  +   + V +NAI+  +  + + ++A
Sbjct: 380 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 439

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
              F ++ D G+     TF SLL+  +  G + +G++  H    + G K +      ++ 
Sbjct: 440 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCICNALIS 498

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE-NVG 537
           ++ R G++  A      M  R   S W +++     HG          ++ E  ++ N  
Sbjct: 499 MYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557

Query: 538 YYVLMSNIYANVGKW-EGVDEVRSLARDRGL 567
            YV + +  ++VG   EG     S+ ++ G+
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGI 588


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/666 (41%), Positives = 402/666 (60%), Gaps = 5/666 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           + L  GK++H  ++  G+    F+   L++MY + G  + A KLFD MP R+  SW AMI
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMI 78

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SG  Q+    EA+     MR+ G        +S +  CA   +I  G  +H   +K G+ 
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             LFV +NL +MY+K G M  A +VF++M  +D VSW ++I  Y +  +   A   F  M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
               +  D   L S       L  C+  RSVH  +++ G F  D+ +GNA+ DMY+K G 
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG-FESDIFVGNALTDMYSKAGD 257

Query: 282 INSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           + SA  VF G+    ++V+S+  LI GY +     + + VF  +     I PN+ T+ S+
Sbjct: 258 MESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR-QGIEPNEFTFSSL 315

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A ++  AL QG ++HA+V+K     D FV++ LVDMYGKCG ++ A+  F ++   + 
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 375

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           + WN+++S  G HG G  A+  F +M+D GV+P+ ITF+SLLT CSH+GLV EG  YF+ 
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M + +G+ P  +HY C++DL GRAG L  A  FI  MP  P+A  W + LGACRIHG+ E
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +G +A+++L +++ +N G  VL+SNIYAN  +WE V  VR   RD  +KK PG+S ++V 
Sbjct: 496 MGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVG 555

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            K  +F   + +HP+   IY++L  L  ++K+ GYVP    V  D+++  KE +L  HSE
Sbjct: 556 YKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSE 615

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           R+A+AF +IS P   PI + KNLRVC DCH+  KFIS++T R+IIVRD++RFHHF DG C
Sbjct: 616 RIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSC 675

Query: 700 SCGDYW 705
           SCGDYW
Sbjct: 676 SCGDYW 681



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 195/391 (49%), Gaps = 7/391 (1%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D   +A ++   A++  +  G  +H  ++  G     F++N+L+NMY+K G + HAL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M +R++VSW ++I+   Q++    A   F  M+  G  P      S     A L    
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             + +H   ++ G    ++ +G+ + DMY+K G +  AC VFE +P KD +SW  +I GY
Sbjct: 124 MGKQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           ++ G   EA+  F+ M +  E+  +Q    S L A   + A + G  +H+ V+K     D
Sbjct: 183 SKIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 241

Query: 368 VFVATCLVDMYGKCGRIDDAMSLF-YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +FV   L DMY K G ++ A ++F       + V +  +I  +    Q +K L+ F ++ 
Sbjct: 242 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            +G+ P+  TF SL+ AC++   + +G Q +  +M+  F   P +     +VD++G+ G 
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGL 359

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           L  A      +   P    W +L+     HG
Sbjct: 360 LEQAIQAFDEIG-DPTEIAWNSLVSVFGQHG 389



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 127/270 (47%), Gaps = 18/270 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  YV   ++ + +  F +     G+ P+ +TF  ++KAC N   L  G ++H  V+K+
Sbjct: 280 LIDGYVETEQIEKGLSVFVELR-RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ D FV++ L+ MY + GL   A + FD++      +WN+++S + Q G   +A+ I 
Sbjct: 339 NFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIF 398

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLIN 172
           + M   GV  + IT  S+L  C+ +  +  GL     +   Y V  G E      + +I+
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEH----YSCVID 454

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP-DL 230
           +  + G ++ A    ++M  E +   W S + A     D     G     +   ++P + 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDK--EMGKLAAEKLVKLEPKNS 512

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
             LV L++I A      + RSV    MR G
Sbjct: 513 GALVLLSNIYANERQWEDVRSVR-MRMRDG 541


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/741 (37%), Positives = 416/741 (56%), Gaps = 39/741 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y + G  +EA+  +++  L  GL  D  TF  VL AC +L  G++IH  V   G +
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNL-QGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLD 139

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
               +A +L+ MY RFG    A+++F  +  RD  SWNA+I  + QSG+   AL I  EM
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + + +  +  T  +++   +  + +  G  IH  IV +G + +L V+  LINMY K G  
Sbjct: 200 KCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSS 258

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VFD+M +RD+VSWN +I  Y Q+ D   A   +  +   G +    T VS+    
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           + +      R VH  I+ RG    +V +  A+V+MYAK G +  A  VF  +  +D ++W
Sbjct: 319 SSVKALAQGRLVHSHILERG-LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAW 377

Query: 301 NTLI----------------------------------TGYAQNGLASEAIEVFQMMEEC 326
           +TLI                                  T Y QNG A  A+++F+ M   
Sbjct: 378 STLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGA 437

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P+  T++++L A + +G L +   +HA++ ++ L  +V V   L++MY +CG +++
Sbjct: 438 AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEE 497

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF      + V W A+++    +G+  +AL+ F++M  EGV+PD +T+ S+L  C+H
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            G + +G RYF  M E  G+ P   H+  MVDL GR+G L  A   +++MP  PD   W 
Sbjct: 558 GGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWM 617

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
             L ACRIHG +ELG  A++R++E+D  +   Y+ MSNIYA  G WE V  VR    +RG
Sbjct: 618 TFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERG 677

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           LKK PG S IEV+ K+  F +G + HP+ ++I +EL  L   M++ GYVPD   VL DV 
Sbjct: 678 LKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVS 737

Query: 627 EDEKEHILTSHSERLAIAFGIISSP-PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           E EKE +L  HSE++AIAFG++SS     PI++ KNLRVC DCH  TKFI++I  R+II+
Sbjct: 738 EGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIL 797

Query: 686 RDSNRFHHF-KDGICSCGDYW 705
           RD NRFH F  DG CSCGDYW
Sbjct: 798 RDCNRFHRFSSDGKCSCGDYW 818



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/549 (29%), Positives = 273/549 (49%), Gaps = 51/549 (9%)

Query: 28  RPDFYTFPPVL---KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           +PD  TF  VL    +C ++ +G+ +H  +    FE D  V  +L+ MY +      AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 85  LFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           +F+ M  R     SWNAMI+ Y Q+G++ EAL +   M L+G+  D +T  S+L  C+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G  IH  +   GL+    ++N L+ MYA+FG +  A R+F  +  RD  SWN++I
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
            A+ QS D   A   F  M +  ++P+  T +++ S  +        R +H  I+  G F
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG-F 238

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D+++  A+++MY K G  + A  VF+ +  +D++SWN +I  Y QNG   EA+E++Q 
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           + +       + T+VSIL A S V AL QG  +H+ +++  L  +V VAT LV+MY KCG
Sbjct: 299 L-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD-------------------------- 416
            +++A  +F  +    +V W+ +I  +  +G G                           
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITT 417

Query: 417 --------KALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
                    A+  FR+M    G++PD +TF+++L AC+  G +SE  +  H    E  ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELE 476

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
            ++     +++++ R G L  A         +   S W A++ A   +G     A A D 
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS-WTAMVAAFSQYGRY---AEALDL 532

Query: 528 LFEVDSENV 536
             E+D E V
Sbjct: 533 FQEMDLEGV 541


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/738 (37%), Positives = 419/738 (56%), Gaps = 36/738 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G   EA+   Y   L  G+ P+ YTFP VL  C  +    +G ++H SV+K+
Sbjct: 102 LIRGYSSAGLGREAI-LLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVF+   L+H Y   G  +   K+F+ M  R+  SW ++I GY +     EA+ + 
Sbjct: 161 GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G+    +T+  ++  CA+  ++  G  +  YI + GL+ N  + N L++MY K 
Sbjct: 221 FEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKC 280

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+ ++R++V +N+I++ Y +      A      M Q G +PD +T++S  
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  AQL D    +  HG+++R G    D I GN ++DMY K G    AC VF+ +  K V
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSI-GNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE----------------------------- 328
           +SWN+L  G+ +NG    A EVF  + E N                              
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459

Query: 329 -INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I  ++ T + I  A  ++GA      +H  + KN +  D+ + T LVDM+ +CG    A
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSA 519

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           M +F ++       W A I    + G G+ A   F QML +GV+PD + FV +LTACSH 
Sbjct: 520 MQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHG 579

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           G V +G   F +M E+ GI P ++HYGCMVDL GRAG L  A + I++MP+ P+  +WG+
Sbjct: 580 GQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGS 638

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL ACR+H N+E+   A++R+ E+  +  G +VL+SNIYA+ GKW  V  VR   R++G+
Sbjct: 639 LLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGV 698

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           +K PG SS++VN  +  F +G+ +HP+   I   L+ +  +    G++PD S VL DV+E
Sbjct: 699 RKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDE 758

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            EKE++L+ HSE+LAIAFG+I++    PI++ KNLR+C DCH++ K  S I  REIIVRD
Sbjct: 759 QEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRD 818

Query: 688 SNRFHHFKDGICSCGDYW 705
           +NRFH F+ G+CSC DYW
Sbjct: 819 NNRFHFFRQGLCSCCDYW 836



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 164/571 (28%), Positives = 273/571 (47%), Gaps = 46/571 (8%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFD--DMPVR 92
           L+ C+ L   K++HC + K G +        L++           + ARK F+     VR
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 93  DSGSW---NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
              +    N++I GY  +G   EA+ +   M + GV+ +  T   +L  C +      G+
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H  +VK GLE ++F+ N LI+ YA+ G M H  +VF+ M ER+VVSW S+I  Y + +
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
            P  A   F  M +AGI+P  +T+V + S  A+L D      V  +I   G  +  V++ 
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMV- 270

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           NA+VDMY K G I++A  +F+    ++++ +NT+++ YA+ GLA EA+ +   M +    
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ-QGP 329

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR------ 383
            P++ T +S + A + +  L  G   H  VI+N L     +   ++DMY KCG+      
Sbjct: 330 RPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR 389

Query: 384 -------------------------IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
                                    ++ A  +F Q+P  ++V WN +IS        + A
Sbjct: 390 VFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDA 449

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           +  FR+M  EG++ D +T + + +AC + G   E  ++ H   E+ GI   ++    +VD
Sbjct: 450 IELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVD 508

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA--SDRLFEVDSENV 536
           +F R G    A      M  R D S W A +G   + GN E GA    +  L +    +V
Sbjct: 509 MFARCGDPQSAMQVFNKMTER-DVSAWTAAIGTMAMEGNGE-GATGLFNQMLIQGVKPDV 566

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
             +V +    ++ G+ E    + SL  D G+
Sbjct: 567 VLFVQVLTACSHGGQVEQGLHIFSLMEDHGI 597


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/745 (36%), Positives = 437/745 (58%), Gaps = 63/745 (8%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L +G R D +T P VLKAC  L     G   H  +   GFE +VF+  +L+ MY R G  
Sbjct: 2   LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 61

Query: 80  NVARKLFDDMPVR---DSGSWNAMISGYCQSGNAVEALDILDEMRL------EGVSMDPI 130
             A  +FD++  R   D  SWN+++S + +S NA  ALD+  +M L           D I
Sbjct: 62  EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 121

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           ++ +ILP C     +     +H   +++G   ++FV N LI+ YAK G+M +A++VF+ M
Sbjct: 122 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--------------------------- 223
             +DVVSWN+++A Y QS +   A   F  M++                           
Sbjct: 182 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 241

Query: 224 --------AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR---------GWFMEDV 266
                   +G  P+ +T++S+ S  A L        +H + ++          G   ED+
Sbjct: 242 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 301

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVF-QMM 323
           ++ NA++DMY+K     +A ++F+ +P+  ++V++W  +I G+AQ G +++A+++F +M+
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD---VFVATCLVDMYGK 380
            E   + PN  T   IL A +H+ A+R G +IHA V+++   +D    FVA CL++MY K
Sbjct: 362 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ-YDSSAYFVANCLINMYSK 420

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG +D A  +F  + + S++ W ++++ +G+HG+G +AL+ F +M   G  PD ITF+ +
Sbjct: 421 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 480

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L ACSH G+V +G  YF  M  ++G+ P  +HY   +DL  R G L  A   +++MP+ P
Sbjct: 481 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 540

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
            A +W ALL ACR+H N+EL   A ++L E+++EN G Y L+SNIYA  G+W+ V  +R 
Sbjct: 541 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 600

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
           L +  G+KK PG S ++       F+ G+R+HP   +IY  L +L  ++K++GYVP+ +F
Sbjct: 601 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 660

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L DV+E+EK ++L  HSE+LA+A+G++++ P  PI+I KNLRVCGDCH+   +IS+I +
Sbjct: 661 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVD 720

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
            EI+VRD +RFHHFK+G CSCG YW
Sbjct: 721 HEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 54/350 (15%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M +AG + D  TL  +     +L   R   + HG I   G F  +V I NA+V MY++ G
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCG 59

Query: 281 IINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG--- 334
            +  A  +F+ +    + DVISWN++++ + ++  A  A+++F  M       P      
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 335 --TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF- 391
             + V+ILPA   + A+ Q  ++H   I+N    DVFV   L+D Y KCG +++A+ +F 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 392 -----------------------------YQVPRSSSVP-----WNAIISCHGIHGQGDK 417
                                        ++  R  ++P     W A+I+ +   G   +
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG--------QRYFHMMQEEFGIKPH 469
           ALN FRQM+  G  P+ +T +S+L+AC+  G  S+G        +     +  +FG +  
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 470 -LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACRIHGN 517
            L  Y  ++D++ +      A +   ++P+   +   W  ++G    +G+
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 349


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/692 (39%), Positives = 421/692 (60%), Gaps = 11/692 (1%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF-EWDVFVAASLLHMYCR-FG 77
           L  G  P+ Y F  V++AC N      G+ I+  V+K G+ E DV V   L+ M+ +  G
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               A K+FD MP R+  +W  MI+ + Q G A +A+D+  +M L G   D  T +S+L 
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERD 194
            C     +  G  +H  +++ GL  ++ V  +L++MYAK    G +  + +VF+QM E +
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 195 VVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           V+SW +II AY QS +    A   F  M    I+P+  +  S+      L+D      V+
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            + ++ G    + + GN+++ MYA+ G +  A   F+ L  K+++S+N ++ GYA+N  +
Sbjct: 360 SYAVKLGIASVNCV-GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 418

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA  +F  + +   I  +  T+ S+L   + +GA+ +G +IH R++K     +  +   
Sbjct: 419 EEAFLLFNEIADTG-IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 477

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY +CG I+ A  +F ++   + + W ++I+    HG   +AL  F +ML+ G +P+
Sbjct: 478 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 537

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            IT+V++L+ACSH G++SEGQ++F+ M +E GI P ++HY CMVDL GR+G L  A  FI
Sbjct: 538 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 597

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
            +MP+  DA +W  LLGACR+HGN ELG  A++ + E + ++   Y+L+SN++A+ G+W+
Sbjct: 598 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 657

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V ++R   ++R L K  G S IEV N+V  F+ G  +HP+  +IY EL  L +K+K +G
Sbjct: 658 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 717

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           Y+PD  FVL D+EE++KE  L  HSE++A+AFG+IS+    PI+IFKNLRVCGDCH   K
Sbjct: 718 YIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIK 777

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS  T REI+VRDSNRFHH K+G+CSC DYW
Sbjct: 778 YISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/571 (27%), Positives = 279/571 (48%), Gaps = 17/571 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           GRL  A       T  +   PD  T+  +LK+C   RN   GK +H  +++ G E D  V
Sbjct: 5   GRLHHAFSTLDLMTQQNA-PPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 66  AASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
             +L+ +Y + G    AR +F+ M   RD  SW+AM+S +  +    +A+    +M   G
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAK-FGMMRH 182
              +    A+++  C+ ++    G +I+ ++VK G LE ++ V   LI+M+ K  G +  
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A +VFD+M ER++V+W  +I  + Q      A   F  M+ +G  PD  T  S+ S   +
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL---GIINSACAVFEGLPVKDVIS 299
           L      + +H  ++R G  + DV +G ++VDMYAK    G ++ +  VFE +P  +V+S
Sbjct: 244 LGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 302

Query: 300 WNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           W  +IT Y Q+G    EAIE+F  M     I PN  ++ S+L A  ++     G ++++ 
Sbjct: 303 WTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 361

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  +     V   L+ MY + GR++DA   F  +   + V +NAI+  +  + + ++A
Sbjct: 362 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 421

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
              F ++ D G+     TF SLL+  +  G + +G++  H    + G K +      ++ 
Sbjct: 422 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-IHGRLLKGGYKSNQCICNALIS 480

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE-NVG 537
           ++ R G++  A      M  R   S W +++     HG          ++ E  ++ N  
Sbjct: 481 MYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539

Query: 538 YYVLMSNIYANVGKW-EGVDEVRSLARDRGL 567
            YV + +  ++VG   EG     S+ ++ G+
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGI 570


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/625 (41%), Positives = 383/625 (61%), Gaps = 24/625 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD +  RD  SWN+MISGY  +G     L I  +M   G+ +D  T+ S+L  CA 
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  +  G  +H   +K   E  +  SN L++MY+K G +  ALRVF++M ER+VVSW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y +      A      M++ G++ D++ + S+    A+     N + VH +I +   
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI-KANN 382

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ + NA++DMYAK G +  A +VF  + VKD+ISWNT++                 
Sbjct: 383 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------- 425

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                 E+ P+  T   ILPA + + AL +G +IH  +++N    D  VA  LVD+Y KC
Sbjct: 426 -----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +  A  LF  +P    V W  +I+ +G+HG G++A+  F +M D G+ PD ++F+S+L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGL+ +G R+F++M+ +F I+P L+HY CMVDL  R G+L  A+ FI+ +P+ PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 600

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL  CRI+ ++EL    ++R+FE++ EN GYYVL++NIYA   K E V  +R  
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREK 660

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNR-THPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
              +GL+K PG S IE+  +V++F +GN  +HP  +KI   L+ +  KMK  GY P   +
Sbjct: 661 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L + +E +KE  L  HSE+LA+AFG+++ PP+  I++ KNLRVCGDCH   KF+S+ T 
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI++RDSNRFHHFKDG CSC  +W
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/489 (30%), Positives = 248/489 (50%), Gaps = 37/489 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G L+E     Y+  +  G+  D  T   VL  C N   L  GK +H   +K 
Sbjct: 222 MISGYVSNG-LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE  +  + +LL MY + G  + A ++F+ M  R+  SW +MI+GY + G +  A+ +L
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV +D + + SIL  CARS ++ +G  +H YI  + +  NLFV N L++MYAK 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC 400

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M+ +D++SWN+++                       ++PD  T+  + 
Sbjct: 401 GSMEGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRTMACIL 439

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+     + +HG+I+R G +  D  + NA+VD+Y K G++  A  +F+ +P KD+
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY  +G  +EAI  F  M +   I P++ +++SIL A SH G L QG +   
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFF- 556

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQ 414
            ++KN    +  +    C+VD+  + G +  A      +P +  +  W A++    I+  
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD 616

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            + A     ++ +  + P++  +  LL         +E +     M+E+ G K   K+ G
Sbjct: 617 IELAEKVAERVFE--LEPENTGYYVLLANIYAE---AEKREEVKRMREKIGKKGLRKNPG 671

Query: 475 CM-VDLFGR 482
           C  +++ GR
Sbjct: 672 CSWIEIKGR 680



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/552 (23%), Positives = 230/552 (41%), Gaps = 100/552 (18%)

Query: 17  CFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           CF   TL    + +F++            +G  IH   LK  F   +F +   + +    
Sbjct: 9   CFSPLTLNQNRKENFFSSQ----------NGCFIHKPSLKTTFFSPIFRSCIPVRIS--- 55

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
             A   R +  D  V D   +NA I  +CQ G+   A++++     +   ++  T  S+L
Sbjct: 56  --ATPTRTI--DHQVTD---YNAKILHFCQLGDLENAMELV--CMCQKSELETKTYGSVL 106

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM------ 190
            +CA   ++  G  +H  I  + +  +  +   L++ YA  G ++   RVFD M      
Sbjct: 107 QLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVY 166

Query: 191 ---------------------------------------------MERDVVSWNSIIAAY 205
                                                         +RDV+SWNS+I+ Y
Sbjct: 167 LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGY 226

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +       G +  M   GI  DL T++S+    A        ++VH   ++   F   
Sbjct: 227 VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS-FERR 285

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +   N ++DMY+K G ++ A  VFE +  ++V+SW ++I GY ++G +  AI + Q ME+
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK 345

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              +  +     SIL A +  G+L  G  +H  +  N +  ++FV   L+DMY KCG ++
Sbjct: 346 -EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSME 404

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A S+F  +     + WN ++                       ++PD  T   +L AC+
Sbjct: 405 GANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPACA 443

Query: 446 HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
               +  G+  + ++++  +    H+ +   +VDL+ + G LG+A      +P + D   
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSK-DLVS 500

Query: 505 WGALLGACRIHG 516
           W  ++    +HG
Sbjct: 501 WTVMIAGYGMHG 512


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/741 (38%), Positives = 413/741 (55%), Gaps = 39/741 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y + G  +EA+  +++  L  GL  D  TF  VL AC +L  G++IH  V   G +
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNL-QGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLD 139

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
               +A +L+ MY RFG    A+++F  +  RD  SWNA+I  + QSG+   AL I  EM
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + + V  +  T  +++   +  + +  G  IH  IV +G + +L V+  LINMY K G  
Sbjct: 200 KCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSS 258

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VFD+M +RD+VSWN +I  Y  + D   A   +  +   G +    T VS+    
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG--------- 291
           + +      R VH  I+ RG    +V +  A+V+MYAK G +  A  VF           
Sbjct: 319 SSVKALAQGRLVHSHILERG-LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAW 377

Query: 292 -------------------------LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                                    L  +D ISWN +IT Y QNG A  A+++F+ M   
Sbjct: 378 STLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGA 437

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P+  T++++L A + +G L +   +HA++ ++ L  +V V   L++MY +CG +++
Sbjct: 438 AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEE 497

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF      + V W A+++    +G+  +AL+ F++M  EGV+PD +T+ S+L  C+H
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            G + +G RYF  M E   + P   H+  MVDL GR+G L  A   +++MP  PD   W 
Sbjct: 558 GGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWM 617

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
             L ACRIHG +ELG  A++R++E+D  +   Y+ MSNIYA  G WE V  VR    +RG
Sbjct: 618 TFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERG 677

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           LKK PG S IEV+ K+  F +G + HP+ ++I +EL  L   M++ GYVPD   VL DV 
Sbjct: 678 LKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVS 737

Query: 627 EDEKEHILTSHSERLAIAFGIISSP-PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           E EKE +L  HSE++AIAFG++SS     PI++ KNLRVC DCH  TKFI++I  R+IIV
Sbjct: 738 EGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIV 797

Query: 686 RDSNRFHHF-KDGICSCGDYW 705
           RD NRFH F  DG CSCGDYW
Sbjct: 798 RDCNRFHRFSSDGKCSCGDYW 818



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 164/549 (29%), Positives = 273/549 (49%), Gaps = 51/549 (9%)

Query: 28  RPDFYTFPPVL---KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           +PD  TF  VL    +C ++V+G+ +H  +    FE D  V  +L+ MY +      AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 85  LFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           +F+ M  R     SWNAMI+ Y Q+G++ EAL +   M L+G+  D +T  S+L  C+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G  IH  +   GL+    ++N L+ MYA+FG +  A R+F  +  RD  SWN++I
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
            A+ QS D   A   F  M +  ++P+  T +++ S  +        R +H  I+  G F
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG-F 238

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D+++  A+++MY K G  + A  VF+ +  +D++SWN +I  Y  NG   EA+E++Q 
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQK 298

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           + +       + T+VSIL A S V AL QG  +H+ +++  L  +V VAT LV+MY KCG
Sbjct: 299 L-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD-------------------------- 416
            +++A  +F  +    +V W+ +I  +  +G G                           
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITT 417

Query: 417 --------KALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
                    A+  FR+M    G++PD +TF+++L AC+  G +SE  +  H    E  ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELE 476

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
            ++     +++++ R G L  A         +   S W A++ A   +G     A A D 
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS-WTAMVAAFSQYGRY---AEALDL 532

Query: 528 LFEVDSENV 536
             E+D E V
Sbjct: 533 FQEMDLEGV 541


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/706 (40%), Positives = 405/706 (57%), Gaps = 40/706 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRD 93
           +L  C+ L   K+IH  ++K G     F  + L+  +C     G  + A  LF  +   +
Sbjct: 34  LLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIE-FCAVSPHGDLSYALSLFKTIRNPN 92

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN MI G   S +   AL+    M   G   +  T  SI   C +      G  +H 
Sbjct: 93  HVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHA 152

Query: 154 YIVKHGLEFNLFVSNNLINMYAK-------------------------------FGMMRH 182
           +++K GLE N FV  +LINMYA+                                G +  
Sbjct: 153 HVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDE 212

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A  +FD++  RDVVSWN++I+ Y QS     A  FF  M++A + P++ T++S+ S  AQ
Sbjct: 213 ARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQ 272

Query: 243 L-NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
             +  +    V  +I  RG    ++ + N ++DMY K G +  A  +FE +  K+V+SWN
Sbjct: 273 SGSSLQLGNWVRSWIEDRG-LGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWN 331

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I GY       EA+ +F+ M + N I+PN  T++SILPA +++GAL  G  +HA V K
Sbjct: 332 VMIGGYTHMSCYKEALGLFRRMMQSN-IDPNDVTFLSILPACANLGALDLGKWVHAYVDK 390

Query: 362 NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           N       VA  T L+DMY KCG +  A  +F  +   S   WNA+IS   +HG  D AL
Sbjct: 391 NMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTAL 450

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F +M  EG  PD ITFV +LTAC H+GL+S G+RYF  M +++ + P L HYGCM+DL
Sbjct: 451 GLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDL 510

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           FGRAG    A   ++NM ++PD +IW +LLGACRIH  +EL    +  LFE++ EN   Y
Sbjct: 511 FGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAY 570

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA  G+WE V ++R+   D  +KK PG SSIEV++ V  F  G++ HP+  +IY
Sbjct: 571 VLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIY 630

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  +  +++  G+VPD S VL D++E+ KE +L+ HSE+LAIAFG+IS+ P + I+I 
Sbjct: 631 KMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIM 690

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCG+CH+ TK IS+I  REII RD NRFHHFKDG CSC DYW
Sbjct: 691 KNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 241/463 (52%), Gaps = 41/463 (8%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           +Y   ++SG  P+ YTFP + K+C   R   +GK++H  VLKLG E + FV  SL++MY 
Sbjct: 115 YYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYA 174

Query: 75  RFG-LANV------------------------------ARKLFDDMPVRDSGSWNAMISG 103
           + G L N                               AR+LFD++PVRD  SWNAMISG
Sbjct: 175 QNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISG 234

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVKHGLEF 162
           Y QSG   EA+   +EMR   V+ +  T+ S+L  CA+S + L  G  +  +I   GL  
Sbjct: 235 YAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGS 294

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+ + N LI+MY K G +  A  +F+++ +++VVSWN +I  Y   +    A G F  M 
Sbjct: 295 NIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMM 354

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGI 281
           Q+ I P+ +T +S+    A L      + VH ++ +    M++ + +  +++DMYAK G 
Sbjct: 355 QSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGD 414

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A  +F+ +  K + +WN +I+G+A +G    A+ +F  M     + P+  T+V +L 
Sbjct: 415 LAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFV-PDDITFVGVLT 473

Query: 342 AYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS 399
           A  H G L  G +  + +I++  +   +    C++D++G+ G  D+A +L   +  +   
Sbjct: 474 ACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDG 533

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
             W +++    IH + + A +  + + +  + P++ +   LL+
Sbjct: 534 AIWCSLLGACRIHRRIELAESVAKHLFE--LEPENPSAYVLLS 574



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC----RNLVDGKKIHCSVLK 56
           MIS Y + GR+ EA+  F++    + + P+  T   VL AC     +L  G  +   +  
Sbjct: 231 MISGYAQSGRVEEAM-AFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIED 289

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   ++ +   L+ MY + G    A  LF+ +  ++  SWN MI GY       EAL +
Sbjct: 290 RGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGL 349

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMY 174
              M    +  + +T  SILP CA    +  G  +H Y+ K+   ++  + +  +LI+MY
Sbjct: 350 FRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMY 409

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           AK G +  A R+FD M  + + +WN++I+ +       TA G F+ M   G  PD +T V
Sbjct: 410 AKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFV 469

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            + +           R     +++       +     ++D++ + G+ + A  + + + +
Sbjct: 470 GVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEM 529

Query: 295 K-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           K D   W +L+     +     A  V + + E    NP+   YV +   Y+  G      
Sbjct: 530 KPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPS--AYVLLSNIYAGAGRWEDVA 587

Query: 354 KIHARVIKN 362
           KI  R+  N
Sbjct: 588 KIRTRLNDN 596


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 295/753 (39%), Positives = 421/753 (55%), Gaps = 87/753 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI+ Y      +EA++ F++  +     P+  T    L+AC   RNL +GKKIH   +  
Sbjct: 243 MIACYANNEAANEALNLFHEM-IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV-- 299

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
              W                              +D  SW A++SGY Q+G A +++ + 
Sbjct: 300 ---W------------------------------KDVVSWVALLSGYAQNGMAYKSMGVF 326

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  +G+  D + V  IL   +        L +H Y+V+ G   N+FV  +LI +Y+K 
Sbjct: 327 RNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKC 386

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY----------EQSNDPITAHGFFTTMQQAGIQ 227
           G +  A+++F  M+ RDVV W+S+IAAY          E  +  I      T+  Q  +Q
Sbjct: 387 GSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQ 446

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR-----GWFME------------------ 264
           P +   +++TS     +       V  F MR      G F E                  
Sbjct: 447 PQVQPPLAITSCTLATHI---PWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIF 503

Query: 265 ------DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
                 D  I      MY     I++A  VFE +P      WN +I G+A +G    ++E
Sbjct: 504 AYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLE 563

Query: 319 VF-QMME-----ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           ++ +MME     + + + PN+ + +S+L A  ++GALR+G   H+ VI+    FD+ VAT
Sbjct: 564 LYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVAT 623

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            ++DMY KCG +D A  LF +      V W+A+I+ +GIHG G KA++ F QM+  GVRP
Sbjct: 624 AIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP 683

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
            H+TF  +L+ACSHSGL+ EG+ YF +M EEF I   L +Y CMVDL GRAG L  A + 
Sbjct: 684 SHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDL 743

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I+NMPV PDASIWG+LLGACRIH N++L    +D LF +D  + GY+VL+SNIYA   +W
Sbjct: 744 IENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRW 803

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
             V++VR +   RG  K  G+S +E +N+V  F  G+R+HP++EK+Y +L  L A MK L
Sbjct: 804 NEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHL 863

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVP   FVL D+EE+ KE  L+ HSERLAIAFG+I++ P + ++I KNLR+CGDCHN  
Sbjct: 864 GYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAI 923

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K IS+I  R I+VRD +RFH F+DG+CSCGDYW
Sbjct: 924 KLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/568 (24%), Positives = 252/568 (44%), Gaps = 98/568 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK----IHCSVLK 56
           ++ +Y +CG++ EA+  F +F      RPD   +  ++   +   D ++        V+ 
Sbjct: 145 LVELYSKCGQMGEALKVFEEFQ-----RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
             F+ D+ +  SLL++Y + G   +A  LF  MP +D  SW+ MI+ Y  +  A EAL++
Sbjct: 200 DCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNL 259

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM  +    + +TV S L  CA S N+  G  IH   V                    
Sbjct: 260 FHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV-------------------- 299

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
                           +DVVSW ++++ Y Q+     + G F  M   GIQPD + +V +
Sbjct: 300 ---------------WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 344

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  ++L   + +  +HG+++R G F  +V +G +++++Y+K G +  A  +F+G+ V+D
Sbjct: 345 LAASSELGIFQQALCLHGYVVRSG-FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD 403

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMM-------EECNEINPNQ---------------- 333
           V+ W+++I  Y  +G   EA+E+F  M         C +I+                   
Sbjct: 404 VVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATH 463

Query: 334 -----------------GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
                            G +  I P Y    A      I A  ++    +D  + T    
Sbjct: 464 IPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQ----YDSRILTKFAI 519

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-- 434
           MY    RID A  +F  +P   S  WN +I      G+   +L  + +M+++G++PD+  
Sbjct: 520 MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSG 579

Query: 435 -----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
                ++ +S+L AC + G + +G+ +FH    + G +  +     ++D++ + G L +A
Sbjct: 580 VIPNRVSILSVLLACGNLGALRKGE-WFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 638

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGN 517
                    + D   W A++ +  IHG+
Sbjct: 639 RCLFDETAGK-DLVCWSAMIASYGIHGH 665



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 213/482 (44%), Gaps = 75/482 (15%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           + +AC N     ++H  V K G   D F A  L  +Y +      ARK+FD+ P  +   
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHL 69

Query: 97  WNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN+ +  YC+     E L +   M    G + D  T+   L  CA    +  G +IH + 
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 156 VKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            K+  +  ++FV + L+ +Y+K G M  AL+VF++    D V W S++  Y+Q+NDP  A
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F+ M                     + DC               F  D+ + N++++
Sbjct: 190 LALFSQMV--------------------MMDC---------------FDGDLPLVNSLLN 214

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           +YAK G    A  +F  +P KDVISW+T+I  YA N  A+EA+ +F  M E     PN  
Sbjct: 215 LYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE-KRFEPNSV 273

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T VS L A +    L +G KIH    K  +  DV                          
Sbjct: 274 TVVSALQACAVSRNLEEGKKIH----KIAVWKDV-------------------------- 303

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                V W A++S +  +G   K++  FR ML +G++PD +  V +L A S  G+  +  
Sbjct: 304 -----VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA- 357

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
              H      G   ++     +++L+ + G LG A    + M VR D  IW +++ A  I
Sbjct: 358 LCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGI 416

Query: 515 HG 516
           HG
Sbjct: 417 HG 418


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/709 (39%), Positives = 413/709 (58%), Gaps = 9/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S Y + G L E V  F +     G+RPD YT   VLK    L    DG+ +H  + KL
Sbjct: 167 LMSGYAKAGDLREGVLLFRKMH-CCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKL 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  +L+  Y +      A  +FD MP RD  SWN+MISG   +G   +A+++ 
Sbjct: 226 GFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELF 285

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M LEG  +D  T+ S+LP CA    +  G ++H Y VK G      ++N L++MY+  
Sbjct: 286 VRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNC 345

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
              R   ++F  M++++VVSW ++I +Y ++       G F  M   G +PD+  + S  
Sbjct: 346 SDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSAL 405

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              A     ++ +SVHG+ +R G  ME V+ + NA+++MY K G +  A  +F+G+  KD
Sbjct: 406 HAFAGNELLKHGKSVHGYAIRNG--MEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKD 463

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWNTLI GY++N LA+EA  +F  M    ++ PN  T   ILPA + + +L +G ++H
Sbjct: 464 MISWNTLIGGYSRNNLANEAFSLFTEM--LLQLRPNAVTMTCILPAAASLSSLERGREMH 521

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A  ++     D FVA  L+DMY KCG +  A  LF ++   + + W  +++ +G+HG+G 
Sbjct: 522 AYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGR 581

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  F QM   G+ PD  +F ++L ACSHSGL  EG R+F  M++E  I+P LKHY CM
Sbjct: 582 DAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCM 641

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL    G+L  A+ FI +MP+ PD+SIW +LL  CRIH N++L    ++R+FE++ EN 
Sbjct: 642 VDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENT 701

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL++NIYA   +WE V ++++    RGL++  G S IE   KV +F   NR HP+  
Sbjct: 702 GYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGT 761

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I + L  +  +M+  G+ P K + L   +       L  HS +LA+AFG+++      I
Sbjct: 762 RIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLI 821

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KN RVC  CH   KFIS++  REII+RDSNRFHHF+ G CSC  YW
Sbjct: 822 RVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 235/494 (47%), Gaps = 12/494 (2%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVL--KLGFE-WDVFVAASLLHMYCRFGLANVAR 83
           D  ++  VL+ C   R+L  GK+ H  V    LG +  D  +   L+ MY + G    AR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 84  KLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           ++FD+MP V D   W A++SGY ++G+  E + +  +M   GV  D  T++ +L   A  
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I  G ++H  + K G      V N L+  YAK    + A+ VFD M  RDV+SWNS+I
Sbjct: 210 GSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           +    +     A   F  M   G + D  TL+S+    A+L+     R VHG+ ++ G F
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTG-F 328

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           +    + N ++DMY+      S   +F  +  K+V+SW  +IT Y + GL  +   +FQ 
Sbjct: 329 ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQE 388

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M       P+     S L A++    L+ G  +H   I+N +   + V   L++MY KCG
Sbjct: 389 M-GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCG 447

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +++A  +F  V     + WN +I  +  +   ++A + F +ML + +RP+ +T   +L 
Sbjct: 448 NMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILP 506

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           A +    +  G R  H      G          ++D++ + G L +A      +  +   
Sbjct: 507 AAASLSSLERG-REMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLI 565

Query: 503 SIWGALLGACRIHG 516
           S W  ++    +HG
Sbjct: 566 S-WTIMVAGYGMHG 578



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 207/435 (47%), Gaps = 18/435 (4%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K  D +P  D    N  I   C+SG+  EAL +L     +GV  D  +  ++L +C+ 
Sbjct: 52  AEKSPDWVPTSDV---NLHIQRLCRSGDLEEALGLLGS---DGV--DDRSYGAVLQLCSE 103

Query: 142 SDNILSGLLIHLYIVKHGL---EFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVS 197
             ++  G   H  +    L     +  +   L+ MY K G + +A RVFD+M +  DV  
Sbjct: 104 VRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRV 163

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           W ++++ Y ++ D       F  M   G++PD  T+  +   +A L    +   VHG + 
Sbjct: 164 WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLE 223

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           + G F     +GNA++  YAK      A  VF+G+P +DVISWN++I+G   NGL  +AI
Sbjct: 224 KLG-FGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAI 282

Query: 318 EVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           E+F +M  E  E+  +  T +S+LPA + +  L  G  +H   +K        +A  L+D
Sbjct: 283 ELFVRMWLEGEEL--DSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLD 340

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY  C        +F  + + + V W A+I+ +   G  DK    F++M  EG RPD   
Sbjct: 341 MYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFA 400

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
             S L A + + L+  G +  H      G++  L     +++++ + G++  A   I + 
Sbjct: 401 ITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDG 458

Query: 497 PVRPDASIWGALLGA 511
            V  D   W  L+G 
Sbjct: 459 VVSKDMISWNTLIGG 473


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/625 (41%), Positives = 383/625 (61%), Gaps = 24/625 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD +  RD  SWN+MISGY  +G     L I  +M   G+ +D  T+ S+L  CA 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  +  G  +H   +K   E  +  SN L++MY+K G +  ALRVF++M ER+VVSW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y +      A      M++ G++ D++ + S+    A+     N + VH +I +   
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI-KANN 382

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ + NA++DMYAK G + +A +VF  + VKD+ISWNT+I                 
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------- 425

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                 E+ P+  T   +LPA + + AL +G +IH  +++N    D  VA  LVD+Y KC
Sbjct: 426 -----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +  A  LF  +P    V W  +I+ +G+HG G++A+  F +M D G+ PD ++F+S+L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGL+ +G R+F++M+ +F I+P L+HY CMVDL  R G+L  A+ F++ +P+ PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPD 600

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL  CR + ++EL    ++R+FE++ EN GYYVL++NIYA   KWE V  +R  
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNR-THPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
              +GL+K PG S IE+  KV++F +GN  +HP  + I   L+ +  KMK  G+ P   +
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L + +E +KE  L  HSE+LA+AFG+++ PP+  I++ KNLRVCGDCH   KF+S+ T 
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI++RDSNRFHHFKDG CSC  +W
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 219/419 (52%), Gaps = 32/419 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G L+E     Y+  +  G+  D  T   VL  C N   L  GK +H   +K 
Sbjct: 222 MISGYVSNG-LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE  +  + +LL MY + G  + A ++F+ M  R+  SW +MI+GY + G +  A+ +L
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV +D + + SIL  CARS ++ +G  +H YI  + +E NLFV N L++MYAK 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M+ +D++SWN++I                       ++PD  T+  + 
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVL 439

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+     + +HG+I+R G +  D  + NA+VD+Y K G++  A  +F+ +P KD+
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY  +G  +EAI  F  M +   I P++ +++SIL A SH G L QG +   
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFF- 556

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAII-SCHGIH 412
            ++KN    +  +    C+VD+  + G +  A      +P +  +  W A++  C   H
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYH 615



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 203/472 (43%), Gaps = 80/472 (16%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +NA I  +CQ G+   A++++     +   ++  T  S+L +CA   +   G  +H  I 
Sbjct: 69  YNAKILHFCQLGDLENAMELI--CMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-------------------------- 190
            + +  +  +   L++ YA  G ++   RVFD M                          
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 191 -------------------------MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
                                     +RDV+SWNS+I+ Y  +       G +  M   G
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I  DL T++S+    A        ++VH   ++   F   +   N ++DMY+K G ++ A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS-FERRINFSNTLLDMYSKCGDLDGA 305

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VFE +  ++V+SW ++I GY ++G +  AI++ Q ME+   +  +     SIL A + 
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLDVVAITSILHACAR 364

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            G+L  G  +H  +  N +  ++FV   L+DMY KCG ++ A S+F  +     + WN +
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEF 464
           I                       ++PD  T   +L AC+    +  G+  + ++++  +
Sbjct: 425 IG---------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
               H+ +   +VDL+ + G LG+A      +P + D   W  ++    +HG
Sbjct: 464 SSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 512



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 66/348 (18%)

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           + ++  V  +N+ I  + Q  D   A       Q++ ++    T  S+  + A L    +
Sbjct: 60  RTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTD 117

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + VH  I++      D  +G  +V  YA  G +     VF+ +  K+V  WN +++ YA
Sbjct: 118 GKKVHS-IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + G   E+I +F++M                         + +GI+              
Sbjct: 177 KIGDFKESICLFKIM-------------------------VEKGIE-------------- 197

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
                     GK  R + A  LF ++     + WN++IS +  +G  ++ L  ++QM+  
Sbjct: 198 ----------GK--RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 245

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+  D  T +S+L  C++SG +S G +  H +  +   +  +     ++D++ + G L  
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDG 304

Query: 489 AHNFIQNMPVRPDASIWGALL----------GACRIHGNMELGAVASD 526
           A    + M  R   S W +++          GA ++   ME   V  D
Sbjct: 305 ALRVFEKMGERNVVS-WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLD 351


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/689 (38%), Positives = 410/689 (59%), Gaps = 33/689 (4%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG-SWNAMISGYC 105
            K++H  +L+        ++ ++L +Y    L + +  +F+ +P   +  +W ++I  Y 
Sbjct: 24  AKQLHAQILRTSLPSPSLLS-TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYT 82

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
             G  + +L    +M   G   D     S+L  C    ++  G  +H  I++ G+ F+L+
Sbjct: 83  SHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLY 142

Query: 166 VSNNLINMYAKFGMMRH----------------------------ALR-VFDQMMERDVV 196
             N L+NMY+KF  +                              +LR VF+ M +RD+V
Sbjct: 143 TCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIV 202

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWN++I+   Q+     A      M  A ++PD  TL S+  I A+  +    + +HG+ 
Sbjct: 203 SWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA 262

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +R G +  DV IG++++DMYAK   ++ +C VF  LP  D ISWN++I G  QNG+  E 
Sbjct: 263 IRNG-YDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           ++ FQ M    +I PN  ++ SI+PA +H+  L  G ++H  +I++    +VF+A+ LVD
Sbjct: 322 LKFFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVD 380

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY KCG I  A  +F ++     V W A+I  + +HG    A++ F++M  EGV+P+++ 
Sbjct: 381 MYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVA 440

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F+++LTACSH+GLV E  +YF+ M +++ I P L+HY  + DL GR G L  A+ FI +M
Sbjct: 441 FMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDM 500

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
            + P  S+W  LL ACR+H N+EL    S +LF VD +N+G YVL+SNIY+  G+W+   
Sbjct: 501 HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDAR 560

Query: 557 EVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
           ++R   RD+G+KK P  S IE+ NKV  F  G+++HP Y++I + L+ L  +M+  GYV 
Sbjct: 561 KLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVL 620

Query: 617 DKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
           D + VL DVEE++K ++L SHSERLAI FGIIS+P  + I++ KNLRVC DCH  TKFIS
Sbjct: 621 DTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFIS 680

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I  REI+VRD++RFHHFKDG CSCGD+W
Sbjct: 681 KIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 147/502 (29%), Positives = 251/502 (50%), Gaps = 41/502 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y   G    ++  F Q  L SG  PD   FP VLK+C   ++L  G+ +H  +++L
Sbjct: 77  IIRCYTSHGLFLHSLSFFIQM-LASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL 135

Query: 58  GFEWDVFVAASLLHMYCRF-GLANV----------------------------ARKLFDD 88
           G  +D++   +L++MY +F  L  V                             RK+F+ 
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 195

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP RD  SWN +ISG  Q+G   +AL ++ EM    +  D  T++S+LP+ A   N+L G
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH Y +++G + ++F+ ++LI+MYAK   +  + RVF  + + D +SWNSIIA   Q+
Sbjct: 256 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 315

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                   FF  M  A I+P+ ++  S+    A L      + +HG+I+ R  F  +V I
Sbjct: 316 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII-RSRFDGNVFI 374

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            +A+VDMYAK G I +A  +F+ + + D++SW  +I GYA +G A +AI +F+ M E   
Sbjct: 375 ASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM-EVEG 433

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV-DMYGKCGRIDDA 387
           + PN   ++++L A SH G + +  K    + ++            V D+ G+ GR+++A
Sbjct: 434 VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEA 493

Query: 388 MSLF--YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
                   +  + SV W+ +++   +H   + A    +++    V P +I    LL+   
Sbjct: 494 YEFISDMHIEPTGSV-WSTLLAACRVHKNIELAEKVSKKLFT--VDPQNIGAYVLLSNIY 550

Query: 446 HSGLVSEGQRYFHMMQEEFGIK 467
            +    +  R   +   + G+K
Sbjct: 551 SAAGRWKDARKLRIAMRDKGMK 572


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/708 (38%), Positives = 420/708 (59%), Gaps = 7/708 (0%)

Query: 2    ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK--ACRNLVD-GKKIHCSVLKLG 58
            +S +++ G   EAVDCF    + S +  D  TF  +L   A  N ++ GK+IH  V++ G
Sbjct: 907  LSRFLQRGEAWEAVDCFVDM-INSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSG 965

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             +  V V   L++MY + G  + AR +F  M   D  SWN MISG   SG    ++ +  
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 119  EMRLEGVSMDPITVASILPVCARSDN-ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +  + +  D  TVAS+L  C+  +        IH   +K G+  + FVS  LI++Y+K 
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKR 1085

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G M  A  +F      D+ SWN+I+  Y  S D   A   +  MQ++G + D +TLV+  
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAA 1145

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 L   +  + +H  +++RG F  D+ + + V+DMY K G + SA  VF  +P  D 
Sbjct: 1146 KAAGGLVGLKQGKQIHAVVVKRG-FNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDD 1204

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ++W T+I+G  +NG    A+  +  M   +++ P++ T+ +++ A S + AL QG +IHA
Sbjct: 1205 VAWTTMISGCVENGQEEHALFTYHQMR-LSKVQPDEYTFATLVKACSLLTALEQGRQIHA 1263

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++K    FD FV T LVDMY KCG I+DA  LF +        WNA+I     HG   +
Sbjct: 1264 NIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKE 1323

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL FF+ M   GV PD +TF+ +L+ACSHSGLVSE    F+ MQ+ +GI+P ++HY C+V
Sbjct: 1324 ALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLV 1383

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            D   RAG +  A   I +MP    AS++  LL ACR+  + E G   +++L  ++  +  
Sbjct: 1384 DALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSA 1443

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SN+YA   +WE V   R++ R   +KK PG+S +++ NKV +F  G+R+H + + 
Sbjct: 1444 AYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDV 1503

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            IY+++  +  +++  GYVPD  F L DVEE++KE  L  HSE+LAIA+G++ +PP + ++
Sbjct: 1504 IYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLR 1563

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVCGDCH+  K+IS++ +REI++RD+NRFHHF++GICSCGDYW
Sbjct: 1564 VIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 153/528 (28%), Positives = 251/528 (47%), Gaps = 46/528 (8%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPD---FYTFPPVLKACRNLVDGKKIHCSVLKL 57
            M+  YV      EA+  F +F  T G RPD     T   V+K  +N+++ K+      KL
Sbjct: 832  MMKAYVDTCLEYEAMLLFSEFHRT-GFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKL 890

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS----WNAMISGYCQSGNAVEA 113
             F +D                              D GS    WN  +S + Q G A EA
Sbjct: 891  -FMYD------------------------------DDGSDVIVWNKALSRFLQRGEAWEA 919

Query: 114  LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            +D   +M    V+ D +T   +L V A  + +  G  IH  +++ GL+  + V N LINM
Sbjct: 920  VDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINM 979

Query: 174  YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
            Y K G +  A  VF QM E D++SWN++I+    S     + G F  + +  + PD  T+
Sbjct: 980  YVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTV 1039

Query: 234  VSLTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             S+    + L      +  +H   M+ G  + D  +  A++D+Y+K G +  A  +F   
Sbjct: 1040 ASVLRACSSLEGGYYLATQIHACAMKAGVVL-DSFVSTALIDVYSKRGKMEEAEFLFVNQ 1098

Query: 293  PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
               D+ SWN ++ GY  +G   +A+ ++ +M+E  E   +Q T V+   A   +  L+QG
Sbjct: 1099 DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE-RSDQITLVNAAKAAGGLVGLKQG 1157

Query: 353  IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +IHA V+K     D+FV + ++DMY KCG ++ A  +F ++P    V W  +IS    +
Sbjct: 1158 KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVEN 1217

Query: 413  GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLK 471
            GQ + AL  + QM    V+PD  TF +L+ ACS    + +G Q + ++++      P + 
Sbjct: 1218 GQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV- 1276

Query: 472  HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
                +VD++ + G++  A    +    R  AS W A++     HGN +
Sbjct: 1277 -MTSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNAMIVGLAQHGNAK 1322



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 158/559 (28%), Positives = 245/559 (43%), Gaps = 84/559 (15%)

Query: 40   ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP--VRDSGSW 97
            A  +L  GK+ H  +L  G   D FV  +L+ MY + G  + ARKLFD  P   RD  +W
Sbjct: 668  AASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTW 727

Query: 98   NAMISGYC-QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
            NA++S     +  + +   +   +R   VS    T+A +  +C  S +  +   +H Y V
Sbjct: 728  NAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAV 787

Query: 157  KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            K GL++++FV+  L+N+YAKFG++R A  +FD M  RDVV WN ++ AY  +     A  
Sbjct: 788  KIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAML 847

Query: 217  FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-----EDVIIGNA 271
             F+   + G +PD +TL +L+ +V    +    +    +  +   FM      DVI+ N 
Sbjct: 848  LFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK--LFMYDDDGSDVIVWNK 905

Query: 272  VVDMYAKLG-----------IINS--AC---------AVFEGLP---------------- 293
             +  + + G           +INS  AC          V  GL                 
Sbjct: 906  ALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSG 965

Query: 294  VKDVIS-WNTLITGYAQNGLASEAIEVFQMM--------------------EEC------ 326
            +  V+S  N LI  Y + G  S A  VF  M                    EEC      
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 327  ----NEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                + + P+Q T  S+L A S + G      +IHA  +K  +  D FV+T L+D+Y K 
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKR 1085

Query: 382  GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            G++++A  LF          WNAI+  + + G   KAL  +  M + G R D IT V+  
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAA 1145

Query: 442  TACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
             A    GLV   Q +  H +  + G    L     ++D++ + G +  A      +P  P
Sbjct: 1146 KAA--GGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SP 1202

Query: 501  DASIWGALLGACRIHGNME 519
            D   W  ++  C  +G  E
Sbjct: 1203 DDVAWTTMISGCVENGQEE 1221



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 175/391 (44%), Gaps = 44/391 (11%)

Query: 134  SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME- 192
            SIL     + ++  G   H  I+  G   + FV+NNLI MYAK G +  A ++FD   + 
Sbjct: 661  SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 193  -RDVVSWNSIIAAYEQSNDPITAHGF--FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
             RD+V+WN+I++A     D  +  GF  F  ++++ +     TL  +  +         S
Sbjct: 721  NRDLVTWNAILSALAAHADK-SHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 250  RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
             S+HG+ ++ G    DV +  A+V++YAK G+I  A  +F+G+ V+DV+ WN ++  Y  
Sbjct: 780  ESLHGYAVKIG-LQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVD 838

Query: 310  NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI---KNCLCF 366
              L  EA+ +F          P+  T                 ++  +RV+   KN L  
Sbjct: 839  TCLEYEAMLLFSEFHRTG-FRPDDVT-----------------LRTLSRVVKCKKNILEL 880

Query: 367  DVFVATCLVDMYGKCGRIDDAMSLF-YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
              F A               A  LF Y    S  + WN  +S     G+  +A++ F  M
Sbjct: 881  KQFKAY--------------ATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDM 926

Query: 426  LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            ++  V  D +TFV +LT  +    +  G++  H +    G+   +    C+++++ +AG 
Sbjct: 927  INSRVACDGLTFVVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSVGNCLINMYVKAGS 985

Query: 486  LGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +  A +    M    D   W  ++  C + G
Sbjct: 986  VSRARSVFGQMN-EVDLISWNTMISGCTLSG 1015


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/710 (37%), Positives = 406/710 (57%), Gaps = 13/710 (1%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLR-PDFYTFPPVLKACRNLVDGK---KIHCSVLKLGFE 60
           Y R     EA   F Q   +S    PD  TF  +L  C + V      ++H   +KLGF+
Sbjct: 120 YARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179

Query: 61  WDVFVAAS--LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            + F+  S  LL  YC     ++A  LF+++P +DS ++N +I+GY + G   E++ +  
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFL 239

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +MR  G      T + +L       +   G  +H   V  G   +  V N +++ Y+K  
Sbjct: 240 KMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD 299

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +     +FD+M E D VS+N +I++Y Q++    +  FF  MQ  G         ++ S
Sbjct: 300 RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVI--IGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           I A L+  +  R +H   +       D I  +GN++VDMYAK  +   A  +F+ LP + 
Sbjct: 360 IAANLSSLQMGRQLHCQAL---LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRT 416

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +SW  LI+GY Q GL    +++F  M   N +  +Q T+ ++L A +   +L  G ++H
Sbjct: 417 TVSWTALISGYVQKGLHGAGLKLFTKMRGSN-LRADQSTFATVLKASASFASLLLGKQLH 475

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A +I++    +VF  + LVDMY KCG I DA+ +F ++P  ++V WNA+IS H  +G G+
Sbjct: 476 AFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGE 535

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  F +M++ G++PD ++ + +LTACSH G V +G  YF  M   +GI P  KHY CM
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACM 595

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-EN 535
           +DL GR G    A   +  MP  PD  +W ++L ACRIH N  L   A+++LF ++   +
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRD 655

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV MSNIYA  G+WE V +V+   R+RG+KK P +S +EVN+K+ +F + ++THP  
Sbjct: 656 AAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNG 715

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++I  ++  LTA+++  GY PD S V+QDV+E  K   L  HSERLA+AF +IS+P   P
Sbjct: 716 DEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCP 775

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I + KNLR C DCH   K IS+I +REI VRD++RFHHF +G+CSCGDYW
Sbjct: 776 IVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 250/528 (47%), Gaps = 49/528 (9%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
             +D +++   ++K GF+ D   +  ++    R G  + ARK++D+MP +++ S N MIS
Sbjct: 28  TFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMIS 87

Query: 103 GYCQSGNAVEALDILDEM--------------------------------RLEGVSM-DP 129
           G+ ++G+   A D+ D M                                R    ++ D 
Sbjct: 88  GHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDH 147

Query: 130 ITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALR 185
           +T  ++LP C  +D +    +  +H + VK G + N F  VSN L+  Y +   +  A  
Sbjct: 148 VTFTTLLPGC--NDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F+++ E+D V++N++I  YE+      +   F  M+Q+G QP   T   +   V  L+D
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD 265

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + +H   +  G F  D  +GN ++D Y+K   +     +F+ +P  D +S+N +I+
Sbjct: 266 FALGQQLHALSVTTG-FSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVIS 324

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y+Q      ++  F+ M +C   +     + ++L   +++ +L+ G ++H + +     
Sbjct: 325 SYSQADQYEASLHFFREM-QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD 383

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH---GIHGQGDKALNFF 422
             + V   LVDMY KC   ++A  +F  +P+ ++V W A+IS +   G+HG G   L  F
Sbjct: 384 SILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLF 440

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +M    +R D  TF ++L A +    +  G++    +     ++      G +VD++ +
Sbjct: 441 TKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAK 499

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            G +  A    + MP R +A  W AL+ A   +G+ E    A  ++ E
Sbjct: 500 CGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIE 546


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/722 (37%), Positives = 412/722 (57%), Gaps = 42/722 (5%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL--HMYCRFGLA 79
           TL + L    +     +  C +    K++H  +L+ G  +D F A+ L        F   
Sbjct: 16  TLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTL 75

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA----LDILDEMRLEGVSMDPITVASI 135
           + AR LFD +P  +  +WN +I  Y  S +  ++    LD+LD  + E +  +  T   +
Sbjct: 76  DYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLD--KCEDLP-NKFTFPFV 132

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           +   +       G  +H   +K     +L++ N+L+  Y   G +  A R+F  +  +DV
Sbjct: 133 IKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDV 192

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSWNS+I+A+ Q N P  A   F  M++  + P+ +T+V + S  A+  D    R V  +
Sbjct: 193 VSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY 252

Query: 256 IMRRGWFMEDVIIGNAVVDMY-------------------------------AKLGIINS 284
           I R+G    D+ + NA++DMY                               AK+G  ++
Sbjct: 253 IERKG-IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDA 311

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VF  +PVK++ +WN LI+ Y QNG   EA+ +F  ++      P++ T VS L A +
Sbjct: 312 ARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACA 371

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +GA+  G  IH  + +  +  +  + + LVDMY KCG ++ A+ +FY V       W+A
Sbjct: 372 QLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSA 431

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+  G+HG+G  A++ F +M +  V+P+ +TF ++L ACSH+GLV EG+ +FH M+  +
Sbjct: 432 MIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVY 491

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           G+ P +KHY CMVD+ GRAG L  A   I  M   P AS+WGALLGAC +H N+ELG +A
Sbjct: 492 GVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELA 551

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           SD+L +++  N G  VL+SNIYA  G+WE V E+R L RD  LKK PG SSIE N  V  
Sbjct: 552 SDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHE 611

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE-KEHILTSHSERLAI 643
           F  G+ THP    IY +L  +  K+KS+GY P+KS +LQ +EED+ KE  L+ HSE+LAI
Sbjct: 612 FLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAI 671

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG+++  P  PI++ KNLR+CGDCH + K +S++ +R+I++RD  RFHHF+DG CSC D
Sbjct: 672 AFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMD 731

Query: 704 YW 705
           YW
Sbjct: 732 YW 733



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKL 57
           +IS Y + G+  EA+  F +  L+   +PD  T    L AC  L  +D G  IH  + + 
Sbjct: 330 LISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE 389

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +  + +SL+ MY + G    A ++F  +  RD   W+AMI+G    G    A+D+ 
Sbjct: 390 GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLF 449

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM+   V  + +T  ++L  C+ +  +  G +  H     +G+   +     ++++  +
Sbjct: 450 FEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGR 509

Query: 177 FGMMRHALRVFDQMMERDVVS-WNSIIAA 204
            G +  A+ + ++M      S W +++ A
Sbjct: 510 AGFLEEAMELINEMSTTPSASVWGALLGA 538


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/621 (42%), Positives = 394/621 (63%), Gaps = 9/621 (1%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D  SWN++I+   +SG++ EAL     MR   +     +    +  C+   +I SG   H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
                 G + ++FVS+ LI MY+  G +  A +VFD++ +R++VSW S+I  Y+ + + +
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 213 TAHGFFTTM------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            A   F  +        A +  D + +VS+ S  +++     + S+H F+++RG F   V
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRG-FDRGV 218

Query: 267 IIGNAVVDMYAKLGIINSACA--VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
            +GN ++D YAK G    A A  +F+ +  KD +S+N++++ YAQ+G+++EA +VF+ + 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLI 278

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   +  N  T  ++L A SH GALR G  IH +VI+  L  DV V T ++DMY KCGR+
Sbjct: 279 KEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + A   F ++   +   W A+I+ +G+HG   KAL  F  M+D GVRP++ITFVS+L AC
Sbjct: 339 ETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH+GL   G  +F+ M+  FG++P L+HYGCMVDL GRAG L  A++ IQ M + PD+ I
Sbjct: 399 SHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSII 458

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           W +LL ACRIH N+EL  ++  RLFE+D  N GYY+L+S+IYA+ G+W+ V+ VR   ++
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKN 518

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           RGL K PG+S +E+N +V +F  G+  HP+ EKIY+ L  L  K+   GYV + S V  D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           V+E+EKE  L  HSE+LAIAFGI+++ P S + + KNLRVC DCHN  K IS+I +RE +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD+ RFHHFKDG CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGFCSCGDYW 659



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 231/426 (54%), Gaps = 17/426 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G  +EA+  F      S L P   +FP  +KAC +L+D   GK+ H      
Sbjct: 47  VIADLARSGDSAEALRAFSSMRKLS-LYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVF 105

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ D+FV+++L+ MY   G    ARK+FD++P R+  SW +MI GY  +GNA++A+ + 
Sbjct: 106 GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 118 DEMRLE------GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
            ++ +E       + +D + + S++  C+R         IH +++K G +  + V N L+
Sbjct: 166 KDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLL 225

Query: 172 NMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQP 228
           + YAK G   +  A ++FDQ++++D VS+NSI++ Y QS     A   F  + ++  +  
Sbjct: 226 DAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTF 285

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           + +TL ++   V+     R  + +H  ++R G   +DVI+G +++DMY K G + +A   
Sbjct: 286 NCITLSTVLLAVSHSGALRIGKCIHDQVIRMG-LEDDVIVGTSIIDMYCKCGRVETARLA 344

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ +  K+V SW  +I GY  +G A++A+E+F  M +   + PN  T+VS+L A SH G 
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGL 403

Query: 349 LRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
              G    +A   +  +   +    C+VD+ G+ G +  A  L  ++     S+ W++++
Sbjct: 404 HDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLL 463

Query: 407 SCHGIH 412
           +   IH
Sbjct: 464 AACRIH 469


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/711 (38%), Positives = 422/711 (59%), Gaps = 13/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-CRNLVDGK--KIHCSVLKL 57
           +IS Y R   L+E V   +      G +P+ +TF   L       V G+  ++H  V+K 
Sbjct: 169 LISGYAR-NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 227

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +  + V+ SL+++Y + G    AR LFD   V+   +WN+MISGY  +G  +EAL + 
Sbjct: 228 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 287

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MRL  V +   + ASI+ +CA    +     +H  +VK+G  F+  +   L+  Y+K 
Sbjct: 288 YSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKC 347

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             M  ALR+F +     +VVSW ++I+ + Q++    A G F+ M++ G++P+  T    
Sbjct: 348 MAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTY--- 404

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++       +   VH  +++   +     +G A++D Y KLG ++ A  VF G+  KD
Sbjct: 405 -SVILTALPVISPSEVHAQVVKTN-YERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKD 462

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKI 355
           +++W+ ++ GYAQ G    AI++F  + +   + PN+ T+ SIL   +   A + QG + 
Sbjct: 463 IVAWSAMLAGYAQAGETEAAIKIFSELTKGG-VKPNEFTFSSILNVCAATTASMGQGKQF 521

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   IK+ L   + V++ L+ MY K G I+ A  +F +      V WN++IS +  HGQ 
Sbjct: 522 HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQA 581

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            KAL+ F++M    V+ D +TF+ +  AC+H+GLV EG++YF +M  +  I P  +H  C
Sbjct: 582 MKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 641

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL+ RAG L  A   I NMP    ++IW  +L ACR+H   ELG +A++++  +  E+
Sbjct: 642 MVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPED 701

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+SN+YA  G W+   +VR L  +R +KK PG+S IEV NK   F  G+R+HP  
Sbjct: 702 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLK 761

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++IY +L +L+ ++K LGY PD S+VLQD++++ KE +L  HSERLAIAFG+I++P  SP
Sbjct: 762 DQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSP 821

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF-KDGICSCGDYW 705
           + I KNLRVCGDCH   K I++I EREI+VRDSNRFHHF  DG+CSCGD+W
Sbjct: 822 LLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 258/522 (49%), Gaps = 22/522 (4%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R GR  EA   F       G+  D   F  VLK    L D   G+++HC  +K GF  
Sbjct: 72  FSRDGRTQEATRLFLNIQHL-GMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLD 130

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV V  SL+  Y +       R +FD+M  R+  +W  +ISGY ++    E L +   M+
Sbjct: 131 DVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQ 190

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EG   +  T A+ L V A       GL +H  +VK+GL+  + VSN+LIN+Y K G +R
Sbjct: 191 DEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 250

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +FD+   + VV+WNS+I+ Y  +   + A G F +M+   ++    +  S+  + A
Sbjct: 251 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCA 310

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISW 300
            L + R +  +H  +++ G F+ D  I  A++  Y+K   +  A  +F E   + +V+SW
Sbjct: 311 NLKELRFTEQLHCSVVKYG-FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSW 369

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I+G+ QN    EA+ +F  M+    + PN+ TY  IL A   +       ++HA+V+
Sbjct: 370 TAMISGFLQNDGKEEAVGLFSEMKR-KGVRPNEFTYSVILTALPVISP----SEVHAQVV 424

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K        V T L+D Y K G++D+A  +F  +     V W+A+++ +   G+ + A+ 
Sbjct: 425 KTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIK 484

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGC---- 475
            F ++   GV+P+  TF S+L  C+ +   S GQ + FH     F IK  L    C    
Sbjct: 485 IFSELTKGGVKPNEFTFSSILNVCAAT-TASMGQGKQFH----GFAIKSRLDSSLCVSSA 539

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           ++ ++ + GH+  A    +    + D   W +++     HG 
Sbjct: 540 LLTMYAKKGHIESAEEVFKRQREK-DLVSWNSMISGYAQHGQ 580



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 199/380 (52%), Gaps = 9/380 (2%)

Query: 70  LHMYCRFGLANVAR-----KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
             +YC FG A+ +R      LFD  P RD  S+ +++ G+ + G   EA  +   ++  G
Sbjct: 34  FRIYC-FGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLG 92

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           + MD    +S+L V A   + L G  +H   +K G   ++ V  +L++ Y K    +   
Sbjct: 93  MEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR 152

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
            VFD+M ER+VV+W ++I+ Y +++        F  MQ  G QP+  T  +   ++A+  
Sbjct: 153 NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEG 212

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                  VH  +++ G   + + + N+++++Y K G +  A  +F+   VK V++WN++I
Sbjct: 213 VGGRGLQVHTVVVKNG-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           +GYA NGL  EA+ +F  M   N +  ++ ++ SI+   +++  LR   ++H  V+K   
Sbjct: 272 SGYAANGLDLEALGMFYSM-RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGF 330

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFR 423
            FD  + T L+  Y KC  + DA+ LF +     + V W A+IS    +   ++A+  F 
Sbjct: 331 VFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFS 390

Query: 424 QMLDEGVRPDHITFVSLLTA 443
           +M  +GVRP+  T+  +LTA
Sbjct: 391 EMKRKGVRPNEFTYSVILTA 410


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/727 (37%), Positives = 418/727 (57%), Gaps = 65/727 (8%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---------- 91
           RN    KK+HC ++K     + F+  +L++ Y + G    AR +FD MP           
Sbjct: 19  RNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTML 78

Query: 92  ---------------------RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDP 129
                                RD  SWN++ISGY   G+ VEA+   + M  +GV +++ 
Sbjct: 79  SAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNR 138

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           IT +++L + +    +  G  IH  IVK G    +FV ++L++MYAK G++  A +VFD+
Sbjct: 139 ITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE 198

Query: 190 -------------------------------MMERDVVSWNSIIAAYEQSNDPITAHGFF 218
                                          M ERD +SW ++I    Q+     A   F
Sbjct: 199 VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLF 258

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M+Q G+  D  T  S+ +    L   +  + +H  I+R G +  +V +G+A+VDMY K
Sbjct: 259 RDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSG-YNHNVFVGSALVDMYCK 317

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
              +  A AVF+ +  K+V+SW  ++ GY QNG + EA+ VF  M+  N I P+  T  S
Sbjct: 318 CRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQR-NGIEPDDFTLGS 376

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           ++ + +++ +L +G + H + + + L   + V+  L+ +YGKCG I+D+  LF ++    
Sbjct: 377 VISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRD 436

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V W A++S +   G+ ++ ++ F +ML +G++PD +TF+++L+ACS +GLV  GQ+YF 
Sbjct: 437 EVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFE 496

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M ++ GI P   HY CM+DLFGRAG L  A NFI  MP  PD+  W  LL +CR++GN 
Sbjct: 497 SMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNE 556

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           E+G  A++ L E+D +N   Y+L+S+IYA  GKW  V ++R   R++G +K PG+S I+ 
Sbjct: 557 EIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKY 616

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            +KV IF   +++ P  ++IY EL  L  KM   GYVPD S VL DVE+ EK  +L  HS
Sbjct: 617 KSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHS 676

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIAFG++  P   PI++ KNLRVCGDCHN TK+IS+I++REI+VRD+ RFH FKDG 
Sbjct: 677 EKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGT 736

Query: 699 CSCGDYW 705
           CSCGD+W
Sbjct: 737 CSCGDFW 743



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 209/435 (48%), Gaps = 67/435 (15%)

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           +C  + N      +H  I+K       F+ NNLIN Y+K G + +A  VFD+M + +  S
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 198 WNSIIAAYEQSNDPITAHGFF--------------------------------TTMQQAG 225
           WN++++AY +S D  T    F                                + M+   
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           +  + +T  ++  +V+        R +HG I++ G F   V +G+++VDMYAK+G+++ A
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFG-FGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 286 CAVFE-------------------------------GLPVKDVISWNTLITGYAQNGLAS 314
             VF+                               G+  +D ISW T+ITG  QNGL +
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+++F+ M +   +  +Q T+ S+L A   + AL++G +IH  +I++    +VFV + L
Sbjct: 253 EAMDLFRDMRQ-EGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KC  +  A ++F ++   + V W A++  +G +G  ++A+  F  M   G+ PD 
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T  S++++C++   + EG + FH      G+   +     ++ L+G+ G +  ++    
Sbjct: 372 FTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 495 NMPVRPDASIWGALL 509
            M  R + S W AL+
Sbjct: 431 EMSFRDEVS-WTALV 444



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 181/375 (48%), Gaps = 35/375 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI+  ++ G  +EA+D F       G+  D YTF  VL AC   R L +GK+IH  +++ 
Sbjct: 241 MITGLIQNGLEAEAMDLFRDMR-QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS 299

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  +VFV ++L+ MYC+      A  +F  M  ++  SW AM+ GY Q+G + EA+ + 
Sbjct: 300 GYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVF 359

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN LI +Y K 
Sbjct: 360 CDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKC 419

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + ++FD+M  RD VSW ++++ Y Q          F  M   G++PD +T +++ 
Sbjct: 420 GSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVL 479

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV----------VDMYAKLGIINSACA 287
           S  ++           G + R   + E ++  + +          +D++ + G +  A  
Sbjct: 480 SACSR----------AGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKN 529

Query: 288 VFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA- 342
               +P   D I W TL++    Y    +   A E    + E +  NP     +S + A 
Sbjct: 530 FINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAES---LLELDPQNPAGYILLSSIYAA 586

Query: 343 ---YSHVGALRQGIK 354
              +S+V  LR+G++
Sbjct: 587 KGKWSNVAQLRRGMR 601


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/705 (38%), Positives = 414/705 (58%), Gaps = 19/705 (2%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVA 66
           R ++ V   +      G RPD+YT   V+ A  N   +  G +IH  V+KLGFE +  V 
Sbjct: 182 RFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC 241

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            SL+ M  + G+   AR +FD+M  +DS SWN+MI+G+  +G  +EA +  + M+L G  
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAK 301

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
               T AS++  CA    +    ++H   +K GL  N  V   L+    K   +  A  +
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 187 FDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           F  M   + VVSW ++I+ Y Q+ D   A   F+ M++ G++P+  T     S +  +  
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTY----STILTVQH 417

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
                 +H  +++   + +   +G A++D + K+G I+ A  VFE +  KDVI+W+ ++ 
Sbjct: 418 AVFISEIHAEVIKTN-YEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLA 476

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGALRQGIKIHARVIK--- 361
           GYAQ G   EA ++F  +     I PN+ T+ SI+ A  +   ++ QG + HA  IK   
Sbjct: 477 GYAQAGETEEAAKIFHQLTR-EGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRL 535

Query: 362 -NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            N LC    V++ LV +Y K G I+ A  +F +      V WN++IS +  HGQ  KAL 
Sbjct: 536 NNALC----VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALE 591

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M    +  D ITF+ +++AC+H+GLV +GQ YF++M  +  I P ++HY CM+DL+
Sbjct: 592 VFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLY 651

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            RAG LG A + I  MP  P A++W  +L A R+H N+ELG +A++++  ++ ++   YV
Sbjct: 652 SRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYV 711

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA  G W     VR L   R +KK PG+S IEV NK   F  G+ +HP  + IY 
Sbjct: 712 LLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYS 771

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           +L  L  +++ +GY PD ++V  D+E+++KE IL+ HSERLAIAFG+I++ P+ P+QI K
Sbjct: 772 KLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVK 831

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCH++ K +S + +R I+VRDSNRFHHFK G+CSCGDYW
Sbjct: 832 NLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 265/541 (48%), Gaps = 24/541 (4%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEW 61
           Y RC +  EA+  F      SGL PD YT   VL  C    N   G+++HC  +K G   
Sbjct: 77  YSRCDQTQEALHLFVSL-YRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVH 135

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            + V  SL+ MY + G     R++FD+M  RD  SWN++++GY  +    +  ++   M+
Sbjct: 136 HLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ 195

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           +EG   D  TV++++   A    +  G+ IH  +VK G E    V N+LI+M +K GM+R
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLR 255

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD M  +D VSWNS+IA +  +   + A   F  MQ AG +P   T  S+    A
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL-PVKDVISW 300
            L +    R +H   ++ G      ++   +V +  K   I+ A ++F  +  V+ V+SW
Sbjct: 316 SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVAL-TKCKEIDDAFSLFSLMHGVQSVVSW 374

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I+GY QNG   +A+ +F +M     + PN  TY +IL     V       +IHA VI
Sbjct: 375 TAMISGYLQNGDTDQAVNLFSLMRR-EGVKPNHFTYSTILTVQHAVFI----SEIHAEVI 429

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K        V T L+D + K G I DA+ +F  +     + W+A+++ +   G+ ++A  
Sbjct: 430 KTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAK 489

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC----M 476
            F Q+  EG++P+  TF S++ AC+      E  + FH     + IK  L +  C    +
Sbjct: 490 IFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFH----AYAIKLRLNNALCVSSSL 545

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN----MELGAVASDRLFEVD 532
           V L+ + G++  AH   +    R D   W +++     HG     +E+      R  EVD
Sbjct: 546 VTLYAKRGNIESAHEIFKRQKER-DLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVD 604

Query: 533 S 533
           +
Sbjct: 605 A 605



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 222/442 (50%), Gaps = 9/442 (2%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A++LFD  P+RD    N ++  Y +     EAL +   +   G+S D  T++ +L VCA 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S N   G  +H   VK GL  +L V N+L++MY K G +R   RVFD+M +RDVVSWNS+
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +  Y  +         F  MQ  G +PD  T+ ++ + +A          +H  +++ G 
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG- 233

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F  + ++ N+++ M +K G++  A  VF+ +  KD +SWN++I G+  NG   EA E F 
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+      P   T+ S++ + + +  L     +H + +K+ L  +  V T L+    KC
Sbjct: 294 NMQLAGA-KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 382 GRIDDAMSLFYQVPR-SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
             IDDA SLF  +    S V W A+IS +  +G  D+A+N F  M  EGV+P+H T+ ++
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTI 412

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           LT   H+  +SE     H    +   +        ++D F + G++  A    + +  + 
Sbjct: 413 LTV-QHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETK- 466

Query: 501 DASIWGALLGACRIHGNMELGA 522
           D   W A+L      G  E  A
Sbjct: 467 DVIAWSAMLAGYAQAGETEEAA 488



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 141/265 (53%), Gaps = 2/265 (0%)

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R A ++FDQ   RD+   N ++  Y + +    A   F ++ ++G+ PD  T+  + S+ 
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVC 112

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A   +      VH   ++ G  +  + +GN++VDMY K G +     VF+ +  +DV+SW
Sbjct: 113 AGSFNGTVGEQVHCQCVKCG-LVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSW 171

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N+L+TGY+ N    +  E+F +M +     P+  T  +++ A ++ GA+  G++IHA V+
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLM-QVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVV 230

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K     +  V   L+ M  K G + DA  +F  +    SV WN++I+ H I+GQ  +A  
Sbjct: 231 KLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFE 290

Query: 421 FFRQMLDEGVRPDHITFVSLLTACS 445
            F  M   G +P H TF S++ +C+
Sbjct: 291 TFNNMQLAGAKPTHATFASVIKSCA 315


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/677 (39%), Positives = 397/677 (58%), Gaps = 5/677 (0%)

Query: 32  YTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           +T   VLK C N   L +GK +H   L+ G E D F+  SL+ MY + G    A K+F  
Sbjct: 52  FTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTK 111

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           +   D  +W+AMI+G  Q G+  EA ++   MR +G   +  T++S++       ++  G
Sbjct: 112 IRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH  I K+G E +  VSN LI MY K   +    +VF+ M   D+VSWN++++ +  S
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDS 231

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                    F  M   G +P++ T +S+    + L D    + VH  I++     +D  +
Sbjct: 232 QTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNS-SDDDDFV 290

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           G A+VDMYAK   +  A   F+ L  +D+ SW  +I+GYAQ   A +A++ F+ M+    
Sbjct: 291 GTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQR-EG 349

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           I PN+ T  S L   SH+  L  G ++HA  +K     D+FV + LVD+YGKCG ++ A 
Sbjct: 350 IKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAE 409

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           ++F  +     V WN IIS +  HGQG+KAL  FR ML EG+ PD  TF+ +L+ACS  G
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMG 469

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG++ F  M + +GI P ++HY CMVD+ GRAG       FI+ M + P + IW  +
Sbjct: 470 LVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETV 529

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LGAC++HGN++ G  A+ +LFE++      Y+L+SNI+A+ G+W+ V  +R+L   RG+K
Sbjct: 530 LGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIK 589

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG S +EV+ +V +F + + +HPK  +IY +L  L   + S+GYVP    VL +V   
Sbjct: 590 KEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNK 649

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK   L  HSERLA++F ++S+    PI+IFKNLR+C DCH++ K IS IT +EI+VRD 
Sbjct: 650 EKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDI 709

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHFK G CSC D W
Sbjct: 710 RRFHHFKRGTCSCQDRW 726



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 125/234 (53%), Gaps = 7/234 (2%)

Query: 8   CGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVF 64
           CGR       FYQ  L  G +P+ +TF  VL++C +L+D   GK++H  ++K   + D F
Sbjct: 234 CGR---GPRIFYQMLL-EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF 289

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           V  +L+ MY +      A   FD +  RD  SW  +ISGY Q+  A +A+    +M+ EG
Sbjct: 290 VGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREG 349

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           +  +  T+AS L  C+    + +G  +H   VK G   ++FV + L+++Y K G M HA 
Sbjct: 350 IKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAE 409

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +F  ++ RD+VSWN+II+ Y Q      A   F  M   GI PD  T + + S
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLS 463



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           M  A R+F  M E++ VSWN+++  Y Q  D       F  M++   +    TL ++   
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A     R  + +H   +R G  + D  +G ++VDMY+K G +  A  VF  +   DV++
Sbjct: 61  CANTGSLREGKVLHALALRSGCEI-DEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W+ +ITG  Q G   EA E+F +M       PNQ T  S++   +++G LR G  IH  +
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            K     D  V+  L+ MY K   ++D   +F  +     V WNA++S         +  
Sbjct: 179 CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGP 238

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
             F QML EG +P+  TF+S+L +CS             ++  EFG + H
Sbjct: 239 RIFYQMLLEGFKPNMFTFISVLRSCS------------SLLDPEFGKQVH 276


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/625 (41%), Positives = 382/625 (61%), Gaps = 24/625 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD +  RD  SWN+MISGY  +G     L I  +M   G+ +D  T+ S+L  CA 
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  +  G  +H   +K   E  +  SN L++MY+K G +  ALRVF++M ER+VVSW S+
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y +      A      M++ G++ D++ + S+    A+     N + VH +I +   
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI-KANN 382

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++ + NA++DMYAK G + +A +VF  + VKD+ISWNT+I                 
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------- 425

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
                 E+ P+  T   +LPA + + AL +G +IH  +++N    D  VA  LVD+Y KC
Sbjct: 426 -----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +  A  LF  +P    V W  +I+ +G+HG G++A+  F +M D G+ PD ++F+S+L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSHSGL+ +G R+F++M+ +F I+P L+HY CMVDL  R G+L  A+ FI+ +P+ PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL  CR + ++EL    ++R+FE++ EN GYYVL++NIYA   KWE V  +R  
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNR-THPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
              +GL+K PG S IE+  KV++F +GN  +HP  + I   L+ +  KMK  G+ P   +
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L + +E +KE  L  HSE+LA+AFG+++ PP+  I++ KNLRVCGDCH   KF+S+ T 
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REI++RD NRFHHFKDG CSC  +W
Sbjct: 781 REIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 219/419 (52%), Gaps = 32/419 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G L+E     Y+  +  G+  D  T   VL  C N   L  GK +H   +K 
Sbjct: 222 MISGYVSNG-LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            FE  +  + +LL MY + G  + A ++F+ M  R+  SW +MI+GY + G +  A+ +L
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  EGV +D + + SIL  CARS ++ +G  +H YI  + +E NLFV N L++MYAK 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M+ +D++SWN++I                       ++PD  T+  + 
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACVL 439

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+     + +HG+I+R G +  D  + NA+VD+Y K G++  A  +F+ +P KD+
Sbjct: 440 PACASLSALERGKEIHGYILRNG-YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY  +G  +EAI  F  M +   I P++ +++SIL A SH G L QG +   
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFF- 556

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAII-SCHGIH 412
            ++KN    +  +    C+VD+  + G +  A      +P +  +  W A++  C   H
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYH 615



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 204/472 (43%), Gaps = 80/472 (16%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +NA I  +CQ G+   A++++     +   ++  T +S+L +CA   +   G  +H  I 
Sbjct: 69  YNAKILHFCQLGDLENAMELI--CMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-------------------------- 190
            + +  +  +   L++ YA  G ++   RVFD M                          
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 191 -------------------------MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
                                     +RDV+SWNS+I+ Y  +       G +  M   G
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I  DL T++S+    A        ++VH   ++   F   +   N ++DMY+K G ++ A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS-FERRINFSNTLLDMYSKCGDLDGA 305

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VFE +  ++V+SW ++I GY ++G +  AI++ Q ME+   +  +     SIL A + 
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLDVVAITSILHACAR 364

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            G+L  G  +H  +  N +  ++FV   L+DMY KCG ++ A S+F  +     + WN +
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEF 464
           I                       ++PD  T   +L AC+    +  G+  + ++++  +
Sbjct: 425 IG---------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
               H+ +   +VDL+ + G LG+A      +P + D   W  ++    +HG
Sbjct: 464 SSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHG 512



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 138/348 (39%), Gaps = 66/348 (18%)

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           + ++  V  +N+ I  + Q  D   A       +++ ++    T  S+  + A L    +
Sbjct: 60  RTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTD 117

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + VH  I++      D  +G  +V  YA  G +     VF+ +  K+V  WN +++   
Sbjct: 118 GKKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVS--- 173

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
                                             Y+ +G  ++ I         CL F +
Sbjct: 174 ---------------------------------EYAKIGDFKESI---------CL-FKI 190

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            V      + GK  R + A  LF ++     + WN++IS +  +G  ++ L  ++QM+  
Sbjct: 191 MVEK---GIEGK--RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 245

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+  D  T +S+L  C++SG +S G +  H +  +   +  +     ++D++ + G L  
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDG 304

Query: 489 AHNFIQNMPVRPDASIWGALL----------GACRIHGNMELGAVASD 526
           A    + M  R   S W +++          GA ++   ME   V  D
Sbjct: 305 ALRVFEKMGERNVVS-WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLD 351


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/671 (39%), Positives = 413/671 (61%), Gaps = 4/671 (0%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           +L+ C+ + D  +IH  ++K        VA +LL         ++  A  +F  +   DS
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            ++N MI G+    +  EA+ +  EM    V  D  T   IL VC+R   +  G  IH  
Sbjct: 90  PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           I+K G   + FV N LI+MYA  G +  A RVFD+M ER+V +WNS+ A Y +S +    
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M +  I+ D +TLVS+ +   +L D      ++ ++  +G      +I  ++VD
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI-TSLVD 268

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MYAK G +++A  +F+ +  +DV++W+ +I+GY+Q     EA+++F  M++ N I+PN+ 
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN-IDPNEI 327

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T VSIL + + +GAL  G  +H  + K  +   V + T L+D Y KCG ++ ++ +F ++
Sbjct: 328 TMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKM 387

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
           P  + + W  +I     +GQG KAL +F  ML++ V P+ +TF+ +L+ACSH+GLV EG+
Sbjct: 388 PVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGR 447

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
             F  M  +FGI+P ++HYGCMVD+ GRAG +  A  FI+NMP++P+A IW  LL +C++
Sbjct: 448 DLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKV 507

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           H N+E+G  +  +L  ++  + G Y+L+SNIYA+VG+WE   +VR   +++G+KKTPG S
Sbjct: 508 HKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCS 567

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            IE++  +  F+  +  H + E+IY+ + ++  ++KS GYVP+ +    D EED+KE  +
Sbjct: 568 LIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSV 627

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
           + HSE+LAIAFG+I SPP + I+I KNLRVC DCHN TK +S++  REI+VRD  RFHHF
Sbjct: 628 SHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHF 687

Query: 695 KDGICSCGDYW 705
           K+G CSC DYW
Sbjct: 688 KEGSCSCNDYW 698



 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 144/422 (34%), Positives = 239/422 (56%), Gaps = 14/422 (3%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASL 69
           EA+  F +    S ++PD +TFP +LK C   + L +G++IH  ++K GF    FV  +L
Sbjct: 107 EAILLFKEMHENS-VQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTL 165

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           +HMY   G   VAR++FD+M  R+  +WN+M +GY +SGN  E + +  EM    +  D 
Sbjct: 166 IHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDE 225

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+ S+L  C R  ++  G  I+ Y+ + GL+ N  +  +L++MYAK G +  A R+FDQ
Sbjct: 226 VTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQ 285

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M  RDVV+W+++I+ Y Q++    A   F  MQ+A I P+ +T+VS+ S  A L      
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETG 345

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + VH FI ++   +  V +G A++D YAK G + S+  VF  +PVK+V+SW  LI G A 
Sbjct: 346 KWVHFFIKKKRMKL-TVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLAS 404

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NG   +A+E F +M E N + PN  T++ +L A SH G + +G  +   + ++   F + 
Sbjct: 405 NGQGKKALEYFYLMLEKN-VEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRD---FGIE 460

Query: 370 VAT----CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
                  C+VD+ G+ G I++A      +P + ++V W  +++   +H   +      +Q
Sbjct: 461 PRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQ 520

Query: 425 ML 426
           ++
Sbjct: 521 LI 522



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y +  R  EA+D F++    + + P+  T   +L +C     L  GK +H  + K 
Sbjct: 297 MISGYSQASRCREALDLFHEMQ-KANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKK 355

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  V +  +L+  Y + G    + ++F  MPV++  SW  +I G   +G   +AL+  
Sbjct: 356 RMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYF 415

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYAK 176
             M  + V  + +T   +L  C+ +  +  G  + + + +  G+E  +     ++++  +
Sbjct: 416 YLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGR 475

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  A +    M ++ + V W +++A+
Sbjct: 476 AGLIEEAFQFIKNMPIQPNAVIWRTLLAS 504


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/658 (39%), Positives = 408/658 (62%), Gaps = 5/658 (0%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +IH  ++  G     F+    ++     G    ARK+FD+ P      WNA+I GY    
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              +A+++   M+  GV+ D  T+  +L  C+    +  G  +H  I + G E ++FV N
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L+ +YAK G +  A  VF+ + +R++VSW S+I+ Y Q+  P+ A   F  M+Q  ++P
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACA 287
           D + LVS+      + D    +S+HG +++ G  F  D++I  ++  MYAK G +  A +
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYAKCGQVMVARS 326

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F+ + + +V+ WN +I+GYA+NG  +EA+ +FQ M   N I  +  T  S + A + VG
Sbjct: 327 FFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKN-IRTDSITVRSAILACAQVG 385

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           +L     +   + K     DVFV T L+DM+ KCG +D A  +F +      V W+A+I 
Sbjct: 386 SLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIV 445

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+HG+G  A++ F  M   GV P+ +TFV LLTAC+HSGLV EG   FH M+  +GI+
Sbjct: 446 GYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGIE 504

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
              +HY C+VDL GR+GHL  A++FI  MP+ P  S+WGALLGAC+I+ ++ LG  A+++
Sbjct: 505 ARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQ 564

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF +D  N G+YV +SN+YA+   W+ V +VR L R++GL K  G+S IE+N K+  F  
Sbjct: 565 LFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRV 624

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+++HP++++I++EL +L  ++K  G++P    VL D+ ++EKE  L +HSERLAIA+G+
Sbjct: 625 GDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGL 684

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P + ++I KNLR C +CH+ TK IS++  REI+VRD+NRFHHFK+G+CSC DYW
Sbjct: 685 ISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 209/398 (52%), Gaps = 6/398 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y     SG+ PD +T P VLKAC     L  GK++H  + +LGFE DVFV   L+ +Y +
Sbjct: 157 YSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAK 216

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G    AR +F+ +  R+  SW +MISGY Q+G  +EAL I  +MR   V  D I + S+
Sbjct: 217 CGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSV 276

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L      +++  G  IH  +VK GLEF   +  +L  MYAK G +  A   FDQM   +V
Sbjct: 277 LRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNV 336

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           + WN++I+ Y ++     A G F  M    I+ D +T+ S     AQ+     ++ +  +
Sbjct: 337 MMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDY 396

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           I  +  +  DV +  A++DM+AK G ++ A  VF+    KDV+ W+ +I GY  +G   +
Sbjct: 397 I-NKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQD 455

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           AI++F  M++   + PN  T+V +L A +H G + +G ++   +    +        C+V
Sbjct: 456 AIDLFYAMKQAG-VCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVV 514

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
           D+ G+ G +++A      +P    V  W A++    I+
Sbjct: 515 DLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIY 552


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/711 (39%), Positives = 409/711 (57%), Gaps = 12/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD------GKKIHCSV 54
           +I  Y +C R SEA+  F +     G   + + F  VLK    LV       G  +H  V
Sbjct: 116 LIQGYSQCLRFSEAIGLFSRLQ-GEGHELNPFVFSTVLKL---LVSAEWAKLGFSVHACV 171

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            KLGF+ D FV  +L+  Y   G A  AR++FD +  +D  SW  M++ Y ++    E+L
Sbjct: 172 YKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESL 231

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +   MR+ G   +  T AS+L  C   +    G  +H    K      LFV   LI++Y
Sbjct: 232 KLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLY 291

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G +  AL+VF++M + DV+ W+ +IA Y QS     A   F  M++  + P+  TL 
Sbjct: 292 IKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLA 351

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           SL    A L D +    +H  +++ G  M +V + NA++DMYAK G + ++  +F   P 
Sbjct: 352 SLLQACASLVDLQLGNQIHCHVVKVGLDM-NVFVSNALMDMYAKCGRMENSLQLFSESPN 410

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
              +SWNT+I GY Q G   +A+ +F+ M EC ++   + TY S+L A + + AL  G +
Sbjct: 411 CTDVSWNTVIVGYVQAGNGEKALILFKDMLEC-QVQGTEVTYSSVLRACAGIAALEPGSQ 469

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH+  +K     +  V   L+DMY KCG I DA  +F  +     V WNA+IS + +HG 
Sbjct: 470 IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGL 529

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +AL  F  ML+   +PD +TFV +L+ACS++GL+  GQ YF  M EE+ I+P  +HY 
Sbjct: 530 YGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYT 589

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMV L GR+GHL  A   +  +P  P   +W ALL AC IH ++ELG +++ R+ E++ E
Sbjct: 590 CMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPE 649

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   +VL+SNIYAN  +W  V  +R+  + +G++K PG S IE   +V  F  G+ +HP 
Sbjct: 650 DEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPD 709

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            + I   L  L  K ++ GYVPD S VL DVE+ +KE  L  HSERLA+A+G+I +P  S
Sbjct: 710 TKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSIS 769

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P++I KNLR+C DCH   K IS+I +R+II+RD NRFHHF +GICSCGDYW
Sbjct: 770 PLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 151/498 (30%), Positives = 263/498 (52%), Gaps = 9/498 (1%)

Query: 24  TSGLRPDF--YTFPPVLKAC-RN--LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           TS   P+F  Y +  +L++C RN     GK +HC ++K G   D+F    LL+ Y ++  
Sbjct: 35  TSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDS 94

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
              A KLFD+MP R++ S+  +I GY Q     EA+ +   ++ EG  ++P   +++L +
Sbjct: 95  LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKL 154

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
              ++    G  +H  + K G + + FV   LI+ Y+  G    A +VFD +  +D+VSW
Sbjct: 155 LVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSW 214

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
             ++A Y ++     +   F+ M+  G +P+  T  S+      L      ++VHG   +
Sbjct: 215 TGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFK 274

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
              ++E++ +G  ++D+Y K G ++ A  VFE +P  DVI W+ +I  YAQ+  + EAIE
Sbjct: 275 TS-YLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIE 333

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F  M     + PNQ T  S+L A + +  L+ G +IH  V+K  L  +VFV+  L+DMY
Sbjct: 334 MFCRMRR-GLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMY 392

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCGR+++++ LF + P  + V WN +I  +   G G+KAL  F+ ML+  V+   +T+ 
Sbjct: 393 AKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYS 452

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S+L AC+    +  G +  H +  +     +      ++D++ + G++  A   + +M  
Sbjct: 453 SVLRACAGIAALEPGSQ-IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDAR-LVFDMLR 510

Query: 499 RPDASIWGALLGACRIHG 516
             D   W A++    +HG
Sbjct: 511 EHDQVSWNAMISGYSVHG 528


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/666 (41%), Positives = 402/666 (60%), Gaps = 5/666 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           + L  GK++H  ++  G+    F+   L++MY + G  + A KLFD MP R+  SW AMI
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMI 78

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SG  Q+    EA+     MR+ G        +S +  CA   +I  G  +H   +K G+ 
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             LFV +NL +MY+K G M  A +VF++M  +D VSW ++I  Y +  +   A   F  M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
               +  D   L S       L  C+  RSVH  +++ G F  D+ +GNA+ DMY+K G 
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG-FESDIFVGNALTDMYSKAGD 257

Query: 282 INSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           + SA  VF G+    ++V+S+  LI GY +     + + VF  +     I PN+ T+ S+
Sbjct: 258 MESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR-QGIEPNEFTFSSL 315

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A ++  AL QG ++HA+V+K     D FV++ LVDMYGKCG ++ A+  F ++   + 
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTE 375

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           + WN+++S  G HG G  A+ FF +M+D GV+P+ ITF+SLLT CSH+GLV EG  YF+ 
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M + +G+ P  +HY C++DL GRAG L  A  FI  MP  P+A  W + LGACRIHG+ E
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +G +A+++L +++ +N G  VL+SNIYAN  +WE V  VR   RD  +KK PG+S ++V 
Sbjct: 496 MGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVG 555

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            K  +F   + +H +   IY++L  L  ++K+ GYVP    V  D+++  KE +L  HSE
Sbjct: 556 YKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSE 615

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           R+A+AF +IS P   PI + KNLRVC DCH+  KFIS++T R+IIVRD++RFHHF DG C
Sbjct: 616 RIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSC 675

Query: 700 SCGDYW 705
           SCGDYW
Sbjct: 676 SCGDYW 681



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 195/391 (49%), Gaps = 7/391 (1%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D   +A ++   A++  +  G  +H  ++  G     F++N+L+NMY+K G + HAL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M +R++VSW ++I+   Q++    A   F  M+  G  P      S     A L    
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             + +H   ++ G    ++ +G+ + DMY+K G +  AC VFE +P KD +SW  +I GY
Sbjct: 124 MGKQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           ++ G   EA+  F+ M +  E+  +Q    S L A   + A + G  +H+ V+K     D
Sbjct: 183 SKIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 241

Query: 368 VFVATCLVDMYGKCGRIDDAMSLF-YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +FV   L DMY K G ++ A ++F       + V +  +I  +    Q +K L+ F ++ 
Sbjct: 242 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            +G+ P+  TF SL+ AC++   + +G Q +  +M+  F   P +     +VD++G+ G 
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGL 359

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           L  A      +   P    W +L+     HG
Sbjct: 360 LEHAIQAFDEIG-DPTEIAWNSLVSVFGQHG 389



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 18/270 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  YV   ++ + +  F +     G+ P+ +TF  ++KAC N   L  G ++H  V+K+
Sbjct: 280 LIDGYVETEQIEKGLSVFVELR-RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ D FV++ L+ MY + GL   A + FD++      +WN+++S + Q G   +A+   
Sbjct: 339 NFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFF 398

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLIN 172
           + M   GV  + IT  S+L  C+ +  +  GL     +   Y V  G E    V    I+
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCV----ID 454

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP-DL 230
           +  + G ++ A    ++M  E +   W S + A     D     G     +   ++P + 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDK--EMGKLAAEKLVKLEPKNS 512

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
             LV L++I A      + RSV    MR G
Sbjct: 513 GALVLLSNIYANERQWEDVRSVR-MRMRDG 541


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/740 (37%), Positives = 434/740 (58%), Gaps = 37/740 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y   G  +EA+  F +  + SG+ PD YTFP  L AC   R   +G +IH  ++K+
Sbjct: 105 LIRGYASSGLCNEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKM 163

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  D+FV  SL+H Y   G  + ARK+FD+M  R+  SW +MI GY +   A +A+D+ 
Sbjct: 164 GYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLF 223

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M R E V+ + +T+  ++  CA+ +++ +G  ++ +I   G+E N  + + L++MY K
Sbjct: 224 FRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A R+FD+    ++   N++ + Y +      A G F  M  +G++PD ++++S 
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----------------- 279
            S  +QL +    +S HG+++R G+   D I  NA++DMY K                  
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 280 --------------GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
                         G +++A   FE +P K+++SWNT+I+G  Q  L  EAIEVF  M+ 
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              +N +  T +SI  A  H+GAL     I+  + KN +  DV + T LVDM+ +CG  +
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            AMS+F  +       W A I    + G  ++A+  F  M+++G++PD + FV  LTACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV +G+  F+ M +  G+ P   HYGCMVDL GRAG L  A   I++MP+ P+  IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            +LL ACR+ GN+E+ A A++++  +  E  G YVL+SN+YA+ G+W  + +VR   +++
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GL+K PG SSI++  K   F +G+ +HP+   I   L  ++ +   LG+VPD S VL DV
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E EK  +L+ HSE+LA+A+G+ISS   + I+I KNLRVC DCH++ KF S++  REII+
Sbjct: 763 DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIIL 822

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD+NRFH+ + G CSCGD+W
Sbjct: 823 RDNNRFHYIRQGKCSCGDFW 842



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 246/508 (48%), Gaps = 41/508 (8%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFDDMPV 91
           P  LK C+ + + K  H S+ K G + DV     L+   C  G     + A+++F++   
Sbjct: 36  PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95

Query: 92  RDSG-SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             +   +N++I GY  SG   EA+ +   M   G+S D  T    L  CA+S    +G+ 
Sbjct: 96  YGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ 155

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  IVK G   +LFV N+L++ YA+ G +  A +VFD+M ER+VVSW S+I  Y + + 
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 211 PITAHG-FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
              A   FF  ++   + P+ +T+V + S  A+L D      V+ FI   G  + D+++ 
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV- 274

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           +A+VDMY K   I+ A  +F+     ++   N + + Y + GL  EA+ VF +M +   +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG-V 333

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ + +S + + S +  +  G   H  V++N       +   L+DMY KC R D A  
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD---------------------- 427
           +F ++   + V WN+I++ +  +G+ D A   F  M +                      
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 428 ----------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
                     EGV  D +T +S+ +AC H G +   +  ++ + E+ GI+  ++    +V
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI-EKNGIQLDVRLGTTLV 512

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           D+F R G    A +   ++  R D S W
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNR-DVSAW 539


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/704 (38%), Positives = 409/704 (58%), Gaps = 11/704 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYT------FPPVLKACRNLVDGKKIHCSVLKLGF-EW 61
            R S+AV  F    L  G+ PD  T       PP        +    +H   LKLG    
Sbjct: 115 ARASDAVSLFRDM-LREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHS 173

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +V V  +LL  YC+ GL   AR++F +MP RDS ++NAM+ G  + G+  EALD+   MR
Sbjct: 174 NVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMR 233

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +G++    T +++L V     ++  G  +H  +V      N+FV+N+L++ Y+K   + 
Sbjct: 234 RKGLAATRFTFSTVLTVATGVGDLCLGRQVH-GLVARATSSNVFVNNSLLDFYSKCDCLD 292

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
              ++F +M+ERD VS+N +IA Y  +         F  MQ        L   SL S+  
Sbjct: 293 EMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAG 352

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +      + +H  ++  G   ED ++GNA++DMY+K G++++A   F     K  +SW 
Sbjct: 353 SVPHIGIGKQIHAQLVLLGLSSED-LVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWT 411

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +ITG  QNG   EA+++F  M     ++P++ T+ S + A S++  +  G ++H+ +I+
Sbjct: 412 AMITGCVQNGQQEEALQLFCGMRRAG-LSPDRATFSSTIKASSNLAMIGLGRQLHSYLIR 470

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           +     VF  + L+DMY KCG +D+A+  F ++P  +S+ WNA+IS +  +GQ   A+  
Sbjct: 471 SGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKM 530

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F  ML  G +PD +TF+S+L+ACSH+GL  E  +YF +M+ E+GI P  +HY C++D  G
Sbjct: 531 FEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLG 590

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           R G        +  MP   D  IW ++L +CR HGN +L  VA+++LF + S +   YV+
Sbjct: 591 RVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVI 650

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNI+A  GKWE    V+ + RDRGL+K  G+S +EV +KV  F + ++T+P   +I DE
Sbjct: 651 LSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDE 710

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  +M   GY PD S  LQ V++D K   L  HSERLAIAF +I++PP +PI++ KN
Sbjct: 711 LERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKN 770

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           L  C DCH+  K +S+I  R+IIVRDS+RFHHFKDG CSCGDYW
Sbjct: 771 LSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/740 (38%), Positives = 421/740 (56%), Gaps = 48/740 (6%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI---HCSVLKL 57
            MIS YV      EA D F +   T   RPD   F  VL A   L D + I       +K 
Sbjct: 332  MISGYVHISDYWEAWDVFVKMCRTVA-RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKT 390

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G+E DV V +++L+ Y R G  ++A   F+ MP R+  SW  MI+ + Q G   +A+ + 
Sbjct: 391  GYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLY 450

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            + +  + V+    T  +++   A+   I    LI   I    L  N+   N +I  Y + 
Sbjct: 451  ERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQN 502

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            GM++ A  +F +M  ++  SW ++IA + Q+ +   A      + ++G  P   +  S  
Sbjct: 503  GMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSAL 562

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A + D    R +H   ++ G      ++ N ++ MYAK G +     VF  + VKD 
Sbjct: 563  SACANIGDVEIGRVIHSLAIKTGCQFNSYVM-NGLISMYAKCGNVEDGSHVFRTIRVKDT 621

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEE------------------------------CN 327
            +SWN+LI+G ++N +  +A  VF+ M +                                
Sbjct: 622  VSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLAR 681

Query: 328  EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMYGKCGRID 385
             I PNQ T  S+L A  ++GA++ G + HA + K  L FD  +FV   L+ MY KCG  +
Sbjct: 682  GIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK--LGFDTFLFVGNSLITMYFKCG-YE 738

Query: 386  DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            D   +F ++P    + WNA++     +G G +A+  F QM  EG+ PD ++F+ +L ACS
Sbjct: 739  DGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798

Query: 446  HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            H+GLV EG  +F+ M +++GI P + HY CMVDL GRAG+L  A   I+NMPV+PD+ IW
Sbjct: 799  HAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIW 858

Query: 506  GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             ALLGACRIH N+ELG   ++RLF++       YVL+SN++A+ G W+ V E+R L +D+
Sbjct: 859  EALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQ 918

Query: 566  GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
            GL K PG S I+V NK+  F TG+RTH + E+IY  L+      ++ GY+PD +FVL DV
Sbjct: 919  GLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDV 978

Query: 626  EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            EE++K++ L  HSE+LA+ FGI+S+P  SPIQI KNLR+CGDCH + KF+S++T R+II+
Sbjct: 979  EEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIII 1038

Query: 686  RDSNRFHHFKDGICSCGDYW 705
            RD NRFHHF+DG CSCGDYW
Sbjct: 1039 RDGNRFHHFRDGSCSCGDYW 1058



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 230/512 (44%), Gaps = 71/512 (13%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVA 66
           R GR+ EA   F +      ++ D  ++        ++++G   +  V +    +D FV 
Sbjct: 183 RLGRVEEARRVFNEM-----IQRDVVSW-------NSMINGYSQNGKVDEARLLFDAFVG 230

Query: 67  AS------LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            +      LL  Y + G    AR++F+ M  R+  SWNAMISGY Q+G+   A  + DEM
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                                                   E N+   N+++  Y     M
Sbjct: 291 P---------------------------------------EKNVASWNSVVTGYCHCYRM 311

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +FDQM ER+ VSW  +I+ Y   +D   A   F  M +   +PD    V + S +
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             L+D     S+    ++ G +  DV++G+A+++ Y + G ++ A   FE +P ++  SW
Sbjct: 372 TGLDDLELIGSLRPIAIKTG-YEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            T+I  +AQ G   +AI++++ + E         T  +++ AY+ VG +++   I   ++
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPE-----QTVATKTAMMTAYAQVGRIQKARLIFDEIL 485

Query: 361 K-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
             N + ++  +A      Y + G + +A  LF ++P  +S  W A+I+    + +  +AL
Sbjct: 486 NPNVVAWNAIIAG-----YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREAL 540

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
               ++   G  P   +F S L+AC++ G V  G R  H +  + G + +      ++ +
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           + + G++    +  + + V+ D   W +L+  
Sbjct: 600 YAKCGNVEDGSHVFRTIRVK-DTVSWNSLISG 630



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 173/385 (44%), Gaps = 49/385 (12%)

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K   + +LF  N  I    + G +  A RVF++M++RDVVSWNS+I  Y Q+     A  
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F     A +  ++ T   L +  A+      +R V   +  R     +V+  NA++  Y
Sbjct: 224 LF----DAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGY 274

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------ 330
            + G + +A  +F+ +P K+V SWN+++TGY      SEA E+F  M E N ++      
Sbjct: 275 VQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMIS 334

Query: 331 ------------------------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
                                   P+Q  +V +L A + +  L     +    IK     
Sbjct: 335 GYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEG 394

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV V + +++ Y + G +D AM  F  +P  +   W  +I+     G+ D A+  + ++ 
Sbjct: 395 DVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP 454

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           ++ V     T  +++TA +  G + + +  F  +     + P++  +  ++  + + G L
Sbjct: 455 EQTV----ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGML 505

Query: 487 GMAHNFIQNMPVRPDASIWGALLGA 511
             A +  Q MPV+  AS W A++  
Sbjct: 506 KEAKDLFQKMPVKNSAS-WAAMIAG 529



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 146/313 (46%), Gaps = 21/313 (6%)

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           + +L     +R V   +++R     DV+  N++++ Y++ G ++ A  +F+    K++ +
Sbjct: 181 LGRLGRVEEARRVFNEMIQR-----DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRT 235

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  L+TGYA+ G   EA EVF+ M E N ++ N     +++  Y   G L+   K+   +
Sbjct: 236 WTILLTGYAKEGRIEEAREVFESMTERNVVSWN-----AMISGYVQNGDLKNARKLFDEM 290

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            +     +V     +V  Y  C R+ +A  LF Q+P  +SV W  +IS +       +A 
Sbjct: 291 PEK----NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVS-EGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           + F +M     RPD   FV +L+A   +GL   E       +  + G +  +     +++
Sbjct: 347 DVFVKMCRTVARPDQSIFVVVLSAI--TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN 404

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
            + R G L +A +F + MP R + S W  ++ A    G ++      +R   V  + V  
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYS-WTTMIAAFAQCGRLDDAIQLYER---VPEQTVAT 460

Query: 539 YVLMSNIYANVGK 551
              M   YA VG+
Sbjct: 461 KTAMMTAYAQVGR 473


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 421/711 (59%), Gaps = 13/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-CRNLVDGK--KIHCSVLKL 57
           +IS Y R     E +  F +     G +P+ +TF   L       V G+  ++H  V+K 
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +  + V+ SL+++Y + G    AR LFD   V+   +WN+MISGY  +G  +EAL + 
Sbjct: 224 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MRL  V +   + AS++ +CA    +     +H  +VK+G  F+  +   L+  Y+K 
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKC 343

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             M  ALR+F ++    +VVSW ++I+ + Q++    A   F+ M++ G++P+  T    
Sbjct: 344 TAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY--- 400

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++       +   VH  +++   +     +G A++D Y KLG +  A  VF G+  KD
Sbjct: 401 -SVILTALPVISPSEVHAQVVKTN-YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKI 355
           +++W+ ++ GYAQ G    AI++F  + +   I PN+ T+ SIL   +   A + QG + 
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGG-IKPNEFTFSSILNVCAATNASMGQGKQF 517

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   IK+ L   + V++ L+ MY K G I+ A  +F +      V WN++IS +  HGQ 
Sbjct: 518 HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQA 577

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            KAL+ F++M    V+ D +TF+ +  AC+H+GLV EG++YF +M  +  I P  +H  C
Sbjct: 578 MKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 637

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL+ RAG L  A   I+NMP    ++IW  +L ACR+H   ELG +A++++  +  E+
Sbjct: 638 MVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED 697

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+SN+YA  G W+   +VR L  +R +KK PG+S IEV NK   F  G+R+HP  
Sbjct: 698 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLK 757

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++IY +L +L+ ++K LGY PD S+VLQD++++ KE +L  HSERLAIAFG+I++P  SP
Sbjct: 758 DQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSP 817

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF-KDGICSCGDYW 705
           + I KNLRVCGDCH   K I++I EREI+VRDSNRFHHF  DG+CSCGD+W
Sbjct: 818 LLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/522 (29%), Positives = 261/522 (50%), Gaps = 22/522 (4%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R GR  EA   F       G+  D   F  VLK    L D   G+++HC  +K GF  
Sbjct: 68  FSRDGRTQEAKRLFLNIHRL-GMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLD 126

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV V  SL+  Y +       RK+FD+M  R+  +W  +ISGY ++    E L +   M+
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQ 186

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EG   +  T A+ L V A       GL +H  +VK+GL+  + VSN+LIN+Y K G +R
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 246

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +FD+   + VV+WNS+I+ Y  +   + A G F +M+   ++    +  S+  + A
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISW 300
            L + R +  +H  +++ G F+ D  I  A++  Y+K   +  A  +F+ +  V +V+SW
Sbjct: 307 NLKELRFTEQLHCSVVKYG-FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSW 365

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I+G+ QN    EA+++F  M+    + PN+ TY  IL A   +       ++HA+V+
Sbjct: 366 TAMISGFLQNDGKEEAVDLFSEMKR-KGVRPNEFTYSVILTALPVISP----SEVHAQVV 420

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K        V T L+D Y K G++++A  +F  +     V W+A+++ +   G+ + A+ 
Sbjct: 421 KTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIK 480

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGC---- 475
            F ++   G++P+  TF S+L  C+ +   S GQ + FH     F IK  L    C    
Sbjct: 481 MFGELTKGGIKPNEFTFSSILNVCAATN-ASMGQGKQFH----GFAIKSRLDSSLCVSSA 535

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           ++ ++ + G++  A    +    + D   W +++     HG 
Sbjct: 536 LLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQ 576



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 211/425 (49%), Gaps = 21/425 (4%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           +FT T    P    F P  +   N V   +I+C           F   S   +Y      
Sbjct: 2   RFTTTIWRPPSLENFKPKFRIYANGVAQVRIYC-----------FGTVSSSRLYN----- 45

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             A  LFD  P RD  S+ +++ G+ + G   EA  +   +   G+ MD    +S+L V 
Sbjct: 46  --AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVS 103

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A   + L G  +H   +K G   ++ V  +L++ Y K    +   +VFD+M ER+VV+W 
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+ Y +++        F  MQ  G QP+  T  +   ++A+         VH  +++ 
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G   + + + N+++++Y K G +  A  +F+   VK V++WN++I+GYA NGL  EA+ +
Sbjct: 224 G-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M   N +  ++ ++ S++   +++  LR   ++H  V+K    FD  + T L+  Y 
Sbjct: 283 FYSM-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYS 341

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           KC  + DA+ LF ++    + V W A+IS    +   ++A++ F +M  +GVRP+  T+ 
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYS 401

Query: 439 SLLTA 443
            +LTA
Sbjct: 402 VILTA 406


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 406/671 (60%), Gaps = 9/671 (1%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRDS 94
           L+ C  +   K+IH  +L+     D F A+ ++  +C     G    AR +F+ +P   +
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIV-AFCALHDSGSLPYARLVFNQIPNPTT 105

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            + N++I GY       +A+     M L+G+  D  T  S+   C     +  G  +H +
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGKQLHCH 162

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
             K G   + ++ N L+NMY+  G +  A +VFD+M+ + VVSW ++I AY Q + P  A
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 222

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M+ A ++P+ +TLV++ +  A+  D   ++ VH +I   G     V+  +A++D
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT-SALMD 281

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           +Y K G    A  +F  +P K++  WN +I G+ ++    EA+ +F  M+  + +  ++ 
Sbjct: 282 VYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQ-LSGVKGDKV 340

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T  S+L A +H+GAL  G  +H  + K  +  DV + T LVDMY KCG I+ AM +F ++
Sbjct: 341 TMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEM 400

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
           P    + W A+I    + GQG KAL  F +M    V+PD ITFV +L ACSH+GLV+EG 
Sbjct: 401 PEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGI 460

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            YF+ M  ++GI+P ++HYGCMVD+ GRAG +  A + IQNMP+ PD  +   LL ACRI
Sbjct: 461 AYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRI 520

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           HGN+ +   A+ +L E+D +N G YVL+SNIY+++  WE   ++R L  +R +KK PG S
Sbjct: 521 HGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 580

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
           +IEV   V  F  G+ +HP+  +IY+ L ++  ++KS GYVPDKS VL D++E EKE+ L
Sbjct: 581 AIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENEL 640

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
           + HSE+LAIAFG++S+ P +PI++ KNLRVC DCH+  KFIS++  REIIVRD NRFHHF
Sbjct: 641 SLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHF 700

Query: 695 KDGICSCGDYW 705
             G CSC D+W
Sbjct: 701 TKGSCSCRDFW 711



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/488 (31%), Positives = 249/488 (51%), Gaps = 14/488 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           FYQ  +  GL PD +TFP + K+C  L +GK++HC   KLGF  D ++  +L++MY   G
Sbjct: 127 FYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCG 186

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               ARK+FD M  +   SW  MI  Y Q     EA+ +   M +  V  + IT+ ++L 
Sbjct: 187 CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLT 246

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            CARS ++ +   +H YI + G+ F+  +++ L+++Y K G    A  +F++M E+++  
Sbjct: 247 ACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFC 306

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN +I  + + +D   A   F  MQ +G++ D +T+ SL      L      + +H +I 
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 366

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           +    + DV +G A+VDMYAK G I SA  VF+ +P KDV++W  LI G A  G   +A+
Sbjct: 367 KEKIEV-DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 425

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVD 376
           E+F  M + +E+ P+  T+V +L A SH G + +GI   ++   K  +   +    C+VD
Sbjct: 426 ELFHEM-QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVD 484

Query: 377 MYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           M G+ GRI +A  L   +P +        ++S   IHG    A    +Q+++  + P + 
Sbjct: 485 MLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIE--LDPKNG 542

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
               LL+    S    E  +    +  E  IK   K  GC     G     G+ H F++ 
Sbjct: 543 GTYVLLSNIYSSMKNWEAAKKMRELMVERNIK---KPPGCSAIEVG-----GVVHEFVKG 594

Query: 496 MPVRPDAS 503
               P +S
Sbjct: 595 DVSHPQSS 602


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/662 (41%), Positives = 394/662 (59%), Gaps = 12/662 (1%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           + +H   +  GF  D FVA++L  +Y      N ARK+FD +P  D+  WN +++G   S
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS 202

Query: 108 GNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
               EAL+    M   G V  D  T+AS+LP  A   N   G  +H +  K GL  +  V
Sbjct: 203 ----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHV 258

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
              LI++YAK G M  A  +FD+M   D+V++N++I+ Y  +    ++   F  +   G+
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P   TLV+L  + +       +  +H  +++ G    +  +  A+  +Y +   ++SA 
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG-LDANAPVSTALTTLYCRFNDMDSAR 377

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F+ +P K + SWN +I+GYAQNGL   A+ +FQ M+  N + PN  T  S L A + +
Sbjct: 378 RAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALN-VRPNPLTISSALSACAQL 436

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL  G  +H  +    L  +V+V T L+DMY KCG I +A  +F  +   + V WN +I
Sbjct: 437 GALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMI 496

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S +G+HGQG +AL  ++ M+D  + P   TF+S+L ACSH GLV EG   F  M  ++GI
Sbjct: 497 SGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGI 556

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGACRIHGNMELGAV 523
            P ++H  CMVDL GRAG L  A   I   P   V P   IWGALLGAC +H + +L  +
Sbjct: 557 TPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGP--GIWGALLGACMVHKDGDLAKL 614

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
           AS +LFE++ EN GYYVL+SN+Y +  ++     VR  A+ R L KTPG + IE+ ++  
Sbjct: 615 ASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPH 674

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
           +F  G+R HP+ + IY  L  LTAKM   GY PD    L DVEE+EKEH++  HSE+LAI
Sbjct: 675 VFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAI 734

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG++++ P + I+I KNLRVC DCHN TK IS++T+R I+VRD++RFHHF+DG+CSCGD
Sbjct: 735 AFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGD 794

Query: 704 YW 705
           YW
Sbjct: 795 YW 796



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 249/487 (51%), Gaps = 19/487 (3%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
           SEA++ F +      +RPD  T   VL A   + +   G+ +H    K G      V   
Sbjct: 202 SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTG 261

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+ +Y + G    AR LFD M   D  ++NA+ISGY  +G    ++++  E+   G+   
Sbjct: 262 LISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPS 321

Query: 129 PITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
             T+ +++PV +      L+G L H ++VK GL+ N  VS  L  +Y +F  M  A R F
Sbjct: 322 SSTLVALIPVHSPFGHEPLAGCL-HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M E+ + SWN++I+ Y Q+     A   F  MQ   ++P+ LT+ S  S  AQL    
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             + VH  I      + +V +  A++DMY K G I  A  +F+ +  K+V+SWN +I+GY
Sbjct: 441 LGKWVHKIIANEKLEL-NVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGY 499

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCF 366
             +G  +EA+++++ M + + ++P   T++S+L A SH G +++G  +   +  +  +  
Sbjct: 500 GLHGQGAEALKLYKDMMDAH-LHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITP 558

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIISCHGIHGQGDKALNFFRQ 424
            +   TC+VD+ G+ G++ +A  L  + P+S+  P  W A++    +H  GD A     Q
Sbjct: 559 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLA-KLASQ 617

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYGCMVDLFGR 482
            L E + P++  +  LL     S L +  ++Y    ++++E   +  +K  GC +   G 
Sbjct: 618 KLFE-LEPENTGYYVLL-----SNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGD 671

Query: 483 AGHLGMA 489
             H+ MA
Sbjct: 672 RPHVFMA 678



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 7/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G    AV  F Q    + +RP+  T    L AC  L     GK +H  +   
Sbjct: 394 MISGYAQNGLTEMAVALFQQMQALN-VRPNPLTISSALSACAQLGALSLGKWVHKIIANE 452

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E +V+V  +L+ MY + G    AR +FD M  ++  SWN MISGY   G   EAL + 
Sbjct: 453 KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLY 512

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
            +M    +     T  S+L  C+    +  G  +   +   +G+   +     ++++  +
Sbjct: 513 KDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGR 572

Query: 177 FGMMRHALRVFDQMMERDVVS--WNSIIAA 204
            G ++ A  +  +  +  V    W +++ A
Sbjct: 573 AGQLKEAFELISEFPKSAVGPGIWGALLGA 602


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/650 (42%), Positives = 387/650 (59%), Gaps = 2/650 (0%)

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           + G   D ++   +L     F   N  R LF  +   +   WN MI G   +    +A++
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
               MR EG   +  T   +L  CAR  ++  G+ IH  +VK G + ++FV  +L+ +YA
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VFD + +++VVSW +II+ Y        A   F  + +  + PD  T+V 
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S   QL D  +   +H  IM  G  + +V +G ++VDMYAK G +  A +VF+G+P K
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIMEMG-MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK 277

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D++SW  +I GYA NGL  EAI++F  M+  N + P+  T V +L A + +GAL  G  +
Sbjct: 278 DIVSWGAMIQGYALNGLPKEAIDLFLQMQREN-VKPDCYTVVGVLSACARLGALELGEWV 336

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              V +N   ++  + T L+D+Y KCG +  A  +F  +     V WNAIIS   ++G  
Sbjct: 337 SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             +   F Q+   G++PD  TF+ LL  C+H+GLV EG+RYF+ M   F + P ++HYGC
Sbjct: 397 KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL GRAG L  AH  I+NMP+  +A +WGALLGACRIH + +L  +A  +L E++  N
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWN 516

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YVL+SNIY+   KW+   +VR    ++ ++K PG S IEV+  V  F  G++ HP  
Sbjct: 517 SGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLS 576

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           EKIY +L  LT KMK  GYVP   FVL D+EE+EKEH L  HSE+LAIAFG+IS+ P + 
Sbjct: 577 EKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAV 636

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLRVCGDCH   K IS IT REI VRD+NRFH F++G CSC DYW
Sbjct: 637 IRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 228/415 (54%), Gaps = 7/415 (1%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FY    + G  P+ +TFP VLKAC  L+D   G KIH  V+K GF+ DVFV  SL+ +Y 
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    A K+FDD+P ++  SW A+ISGY   G   EA+D+   +    ++ D  T+  
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C +  ++ SG  IH  I++ G+  N+FV  +L++MYAK G M  A  VFD M E+D
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKD 278

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +VSW ++I  Y  +  P  A   F  MQ+  ++PD  T+V + S  A+L        V G
Sbjct: 279 IVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSG 338

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            +  R  F+ + ++G A++D+YAK G ++ A  VF+G+  KD + WN +I+G A NG   
Sbjct: 339 LV-DRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVK 397

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATC 373
            +  +F  +E+   I P+  T++ +L   +H G + +G +    + +   L   +    C
Sbjct: 398 ISFGLFGQVEKLG-IKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 374 LVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           +VD+ G+ G +D+A  L   +P  ++++ W A++    IH     A    +Q+++
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIE 511



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 9/349 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y+  G+  EA+D F +  L   L PD +T   VL AC  L D   G+ IH  ++++
Sbjct: 184 IISGYIGVGKFREAIDMFRRL-LEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEM 242

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +VFV  SL+ MY + G    AR +FD MP +D  SW AMI GY  +G   EA+D+ 
Sbjct: 243 GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLF 302

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ E V  D  TV  +L  CAR   +  G  +   + ++   +N  +   LI++YAK 
Sbjct: 303 LQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKC 362

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF  M E+D V WN+II+    +     + G F  +++ GI+PD  T + L 
Sbjct: 363 GSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLL 422

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
                       R     + R       +     +VD+  + G+++ A  +   +P++ +
Sbjct: 423 CGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEAN 482

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYS 344
            I W  L+ G  +    ++  E+   +++  E+ P N G YV +   YS
Sbjct: 483 AIVWGALL-GACRIHRDTQLAEL--ALKQLIELEPWNSGNYVLLSNIYS 528


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/659 (40%), Positives = 393/659 (59%), Gaps = 4/659 (0%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K IH ++L+LG + D ++   +L     FG  N + ++ D     +   +N MI G   +
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               E+++I   MR EG+S D  T   +L  CAR  +   G+ +H  +VK G E + FV 
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +LIN+Y K G + +A +VFD + +++  SW + I+ Y        A   F  + + G++
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  +LV + S   +  D R+   +  +I   G  + +V +  A+VD Y K G +  A +
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENG-MVRNVFVATALVDFYGKCGNMERARS 265

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHV 346
           VF+G+  K+++SW+++I GYA NGL  EA+++F +M+ E   + P+    V +L + + +
Sbjct: 266 VFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNE--GLKPDCYAMVGVLCSCARL 323

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL  G      +  N    +  + T L+DMY KCGR+D A  +F  + +   V WNA I
Sbjct: 324 GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAI 383

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S   + G    AL  F QM   G++PD  TFV LL AC+H+GLV EG+RYF+ M+  F +
Sbjct: 384 SGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTL 443

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HYGCMVDL GRAG L  AH  I++MP+  +A +WGALLG CR+H + +L  V   
Sbjct: 444 TPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLK 503

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           +L  ++  + G YVL+SNIYA   KWE   ++RS+  +RG+KK PG+S IEV+  V  F 
Sbjct: 504 KLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFL 563

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP  EKIY +L  L   +K+ GYVP    VL D+EE+EKEH +  HSE+LA+AFG
Sbjct: 564 VGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFG 623

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS+ P   I + KNLRVCGDCH   K IS+I  REIIVRD+NRFH F DG+CSC DYW
Sbjct: 624 LISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 223/414 (53%), Gaps = 25/414 (6%)

Query: 16  DCF------YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVA 66
           DCF      Y      GL PD +TFP VLKAC  ++D   G K+H  V+K G E D FV 
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            SL+++Y + G  + A K+FDD+P ++  SW A ISGY   G   EA+D+   +   G+ 
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D  ++  +L  C R+ ++ SG  I  YI ++G+  N+FV+  L++ Y K G M  A  V
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD M+E+++VSW+S+I  Y  +  P  A   F  M   G++PD   +V +    A+L   
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                    I     F+++ ++G A++DMYAK G ++ A  VF G+  KD + WN  I+G
Sbjct: 327 ELGDWASNLI-NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISG 385

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            A +G   +A+ +F  ME+ + I P++ T+V +L A +H G + +G     R   +  C 
Sbjct: 386 LAMSGHVKDALGLFGQMEK-SGIKPDRNTFVGLLCACTHAGLVEEG----RRYFNSMEC- 439

Query: 367 DVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            VF  T       C+VD+ G+ G +D+A  L   +P  ++++ W A++    +H
Sbjct: 440 -VFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 151/311 (48%), Gaps = 9/311 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLG 58
           IS YV  G+  EA+D F +  L  GLRPD ++   VL AC+   +L  G+ I   + + G
Sbjct: 181 ISGYVGVGKCREAIDMFRRL-LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENG 239

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              +VFVA +L+  Y + G    AR +FD M  ++  SW++MI GY  +G   EALD+  
Sbjct: 240 MVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFF 299

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF--NLFVSNNLINMYAK 176
           +M  EG+  D   +  +L  CAR   +  G      I  +G EF  N  +   LI+MYAK
Sbjct: 300 KMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLI--NGNEFLDNSVLGTALIDMYAK 357

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G M  A  VF  M ++D V WN+ I+    S     A G F  M+++GI+PD  T V L
Sbjct: 358 CGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGL 417

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
                        R     +        ++     +VD+  + G ++ A  + + +P++ 
Sbjct: 418 LCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEA 477

Query: 296 DVISWNTLITG 306
           + I W  L+ G
Sbjct: 478 NAIVWGALLGG 488


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/708 (37%), Positives = 401/708 (56%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
            +I+   +CG   +A++ F +  L  GL PD  T   ++ AC     L  G+++H    KL
Sbjct: 360  LINGLSQCGYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL 418

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            GF  +  +  +LL++Y +      A   F +  V +   WN M+  Y    +   +  I 
Sbjct: 419  GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 478

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++E +  +  T  SIL  C R  ++  G  IH  I+K   + N +V + LI+MYAK 
Sbjct: 479  RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKL 538

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A  +  +   +DVVSW ++IA Y Q N    A   F  M   GI+ D + L +  
Sbjct: 539  GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 598

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A L   +  + +H      G F  D+   NA+V +Y++ G I  +   FE     D 
Sbjct: 599  SACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 657

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            I+WN L++G+ Q+G   EA+ VF  M     I+ N  T+ S + A S    ++QG ++HA
Sbjct: 658  IAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETANMKQGKQVHA 716

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             + K     +  V   L+ MY KCG I DA   F +V   + V WNAII+ +  HG G +
Sbjct: 717  VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSE 776

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL+ F QM+   VRP+H+T V +L+ACSH GLV +G  YF  M  E+G+ P  +HY C+V
Sbjct: 777  ALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVV 836

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            D+  RAG L  A  FIQ MP++PDA +W  LL AC +H NME+G  A+  L E++ E+  
Sbjct: 837  DMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 896

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SN+YA   KW+  D  R   +++G+KK PG S IEV N +  FY G++ HP  ++
Sbjct: 897  TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 956

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I++  ++LT +   +GYV D   +L +++ ++K+ I+  HSE+LAI+FG++S P   PI 
Sbjct: 957  IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 1016

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCH W KF+S+++ REIIVRD+ RFHHF+ G CSC DYW
Sbjct: 1017 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 248/503 (49%), Gaps = 12/503 (2%)

Query: 23  LTSGLRPDFYTFPPVLKACR------NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           ++  + P+  TF  VL+ACR      ++V+  +IH  +L  G      V   L+ +Y R 
Sbjct: 178 VSENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARILYQGLRDSTVVCNPLIDLYSRN 235

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  ++AR++FD + ++D  SW AMISG  ++    EA+ +  +M + G+   P   +S+L
Sbjct: 236 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 295

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C + +++  G  +H  ++K G   + +V N L+++Y   G +  A  +F  M +RD V
Sbjct: 296 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           ++N++I    Q      A   F  M   G++PD  TL SL    +        + +H + 
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
            + G+   + I G A++++YAK   I +A   F    V++V+ WN ++  Y        +
Sbjct: 416 TKLGFASNNKIEG-ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
             +F+ M +  EI PNQ TY SIL     +G L  G +IH+++IK     + +V + L+D
Sbjct: 475 FRIFRQM-QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY K G++D A  +  +      V W  +I+ +  +   DKAL  FRQMLD G+R D + 
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
             + ++AC+    + EGQ+  H      G    L     +V L+ R G +  ++   +  
Sbjct: 594 LTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query: 497 PVRPDASIWGALLGACRIHGNME 519
               D   W AL+   +  GN E
Sbjct: 653 EA-GDNIAWNALVSGFQQSGNNE 674



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 255/514 (49%), Gaps = 10/514 (1%)

Query: 26  GLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+ P  Y F  VL AC+   +L  G+++H  VLKLGF  D +V  +L+ +Y   G    A
Sbjct: 283 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 342

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +F +M  RD+ ++N +I+G  Q G   +A+++   M L+G+  D  T+AS++  C+  
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 402

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H Y  K G   N  +   L+N+YAK   +  AL  F +    +VV WN ++
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
            AY   +D   +   F  MQ   I P+  T  S+     +L D      +H  I++   F
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN-F 521

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +  + + ++DMYAKLG +++A  +      KDV+SW T+I GY Q     +A+  F+ 
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M +   I  ++    + + A + + AL++G +IHA+   +    D+     LV +Y +CG
Sbjct: 582 MLD-RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           +I+++   F Q     ++ WNA++S     G  ++AL  F +M  EG+  ++ TF S + 
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           A S +  + +G++  H +  + G     +    ++ ++ + G +  A      +  + + 
Sbjct: 701 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 759

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           S W A++ A   HG    G+ A D   ++   NV
Sbjct: 760 S-WNAIINAYSKHG---FGSEALDSFDQMIHSNV 789



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 233/477 (48%), Gaps = 16/477 (3%)

Query: 26  GLRPDFYTFPPVLKACR----NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           G+RP+  T   +L+ C     +L +G+K+H  +LKLG + +  ++  L   Y   G    
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K+FD+MP R   +WN MI          E   +   M  E V+ +  T + +L  C R
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-R 197

Query: 142 SDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
             ++   ++  IH  I+  GL  +  V N LI++Y++ G +  A RVFD +  +D  SW 
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+   ++     A   F  M   GI P      S+ S   ++        +HG +++ 
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  D  + NA+V +Y  LG + SA  +F  +  +D +++NTLI G +Q G   +A+E+
Sbjct: 318 G-FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M   + + P+  T  S++ A S  G L +G ++HA   K     +  +   L+++Y 
Sbjct: 377 FKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 435

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KC  I+ A+  F +    + V WN ++  +G+      +   FRQM  E + P+  T+ S
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495

Query: 440 LLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFI 493
           +L  C   G +  G++ +  +++  F     L  Y C  ++D++ + G L  A + +
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNF----QLNAYVCSVLIDMYAKLGKLDTAWDIL 548


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/710 (38%), Positives = 423/710 (59%), Gaps = 8/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M+S +V+  R S+AV+ F +  + SG+RP+ + F  V+ AC   R+L  G+K+H  V++ 
Sbjct: 173 MMSAFVKNDRCSDAVELFGEM-VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRT 231

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++ DVF A +L+ MY + G  ++A  +F  +P  D  SWNA ISG    G+   AL++L
Sbjct: 232 GYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELL 291

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYA 175
            +M+  G+  +  T++SIL  CA +      L   IH +++K   + + ++   L++MYA
Sbjct: 292 LQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYA 351

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K+G++  A +VF+ +  +D++ WN++I+          +   F  M++ G   +  TL +
Sbjct: 352 KYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAA 411

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    A L    ++  VH    + G F+ D  + N ++D Y K   +  A  VFE     
Sbjct: 412 VLKSTASLEAISDTTQVHALAEKIG-FLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSD 470

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++I++ ++IT  +Q     +AI++F  M     + P+     S+L A + + A  QG ++
Sbjct: 471 NIIAFTSMITALSQCDHGEDAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQV 529

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA +IK     DVF    LV  Y KCG I+DA   F  +P    V W+A+I     HG G
Sbjct: 530 HAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHG 589

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL+ FR+M+DE + P+HIT  S+L AC+H+GLV E + YF  M+E FGI    +HY C
Sbjct: 590 KRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSC 649

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DL GRAG L  A   + +MP   +A++WGALL A R+H + ELG +A+++LF ++ E 
Sbjct: 650 MIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEK 709

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G +VL++N YA+ G W+ V +VR L +D  +KK P  S +E+ ++V  F  G+++HP+ 
Sbjct: 710 SGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRA 769

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
             IY +L  L   M   GYVP+    L DV++ EKE +L+ HSERLA+AF +IS+P  +P
Sbjct: 770 RDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAP 829

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLR+C DCH   KFIS+I  REII+RD NRFHHF DG CSCGDYW
Sbjct: 830 IRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/522 (27%), Positives = 264/522 (50%), Gaps = 12/522 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +++ Y       EA+  F       G+R + +  P VLK   +   G ++H   +  G  
Sbjct: 74  LVTAYSNNALPREALAAFRAMR-ARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLS 132

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILDE 119
            D+FVA +L+ MY  FG  + AR++FD+    R++ SWN M+S + ++    +A+++  E
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGE 192

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   GV  +    + ++  C  S ++ +G  +H  +V+ G + ++F +N L++MY+K G 
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGD 252

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL--T 237
           +  A  VF ++ + DVVSWN+ I+          A      M+ +G+ P++ TL S+   
Sbjct: 253 IHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A        R +HGF+++     +D  IG A+VDMYAK G+++ A  VFE +P KD+
Sbjct: 313 CAGAGAGAFALGRQIHGFMIKACADSDD-YIGVALVDMYAKYGLLDDARKVFEWIPRKDL 371

Query: 298 ISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           + WN LI+G +  G   E++ +F +M +E ++I  N+ T  ++L + + + A+    ++H
Sbjct: 372 LLWNALISGCSHGGCHGESLSLFCRMRKEGSDI--NRTTLAAVLKSTASLEAISDTTQVH 429

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A   K     D  V   L+D Y KC  +  A  +F +    + + + ++I+       G+
Sbjct: 430 ALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGE 489

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGC 475
            A+  F +ML +G+ PD     SLL AC+      +G Q + H+++ +F       +   
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGN--A 547

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +V  + + G +  A      +P +   S W A++G    HG+
Sbjct: 548 LVYTYAKCGSIEDADLAFSGLPDKGVVS-WSAMIGGLAQHGH 588



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 220/435 (50%), Gaps = 23/435 (5%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A ++L  G  IH  +LK G     F    LL  Y +  L   AR++FD+ P     SW++
Sbjct: 16  ATQSLFLGAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSS 73

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +++ Y  +    EAL     MR  GV  +   +  +L  CA    +  G+ +H   V  G
Sbjct: 74  LVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTG 130

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFF 218
           L  ++FV+N L+ MY  FG +  A RVFD+   +R+ VSWN +++A+ +++    A   F
Sbjct: 131 LSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELF 190

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M  +G++P+      + +      D    R VH  ++R G + +DV   NA+VDMY+K
Sbjct: 191 GEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTG-YDKDVFTANALVDMYSK 249

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
           LG I+ A  VF  +P  DV+SWN  I+G   +G    A+E+   M+    + PN  T  S
Sbjct: 250 LGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV-PNVFTLSS 308

Query: 339 ILPAYSHVGALRQGI--KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           IL A +  GA    +  +IH  +IK C   D ++   LVDMY K G +DDA  +F  +PR
Sbjct: 309 ILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPR 368

Query: 397 SSSVPWNAIIS------CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
              + WNA+IS      CHG      ++L+ F +M  EG   +  T  ++L + +    +
Sbjct: 369 KDLLLWNALISGCSHGGCHG------ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAI 422

Query: 451 SEGQRYFHMMQEEFG 465
           S+  +  H + E+ G
Sbjct: 423 SDTTQ-VHALAEKIG 436



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 186/390 (47%), Gaps = 11/390 (2%)

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
           P +++ +L   A + ++  G  IH +++K GL  + F  N+L++ Y+K  +   A RVFD
Sbjct: 4   PESISPLLTRYAATQSLFLGAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARRVFD 61

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +  +   VSW+S++ AY  +  P  A   F  M+  G++ +     +L  ++    D   
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEF---ALPIVLKCAPDAGL 118

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKDVISWNTLITGY 307
              VH   +  G    D+ + NA+V MY   G ++ A  VF E    ++ +SWN +++ +
Sbjct: 119 GVQVHAVAVSTG-LSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +N   S+A+E+F  M   + + PN+  +  ++ A +    L  G K+HA V++     D
Sbjct: 178 VKNDRCSDAVELFGEM-VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           VF A  LVDMY K G I  A  +F +VP++  V WNA IS   +HG    AL    QM  
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 428 EGVRPDHITFVSLLT-ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            G+ P+  T  S+L              R  H    +            +VD++ + G L
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLL 356

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             A    + +P R D  +W AL+  C  HG
Sbjct: 357 DDARKVFEWIP-RKDLLLWNALISGCS-HG 384



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 10/267 (3%)

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H  +++ G         N ++  Y+K  +  SA  VF+  P    +SW++L+T Y+ N 
Sbjct: 26  IHAHLLKSGLLHA---FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNA 82

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           L  EA+  F+ M     +  N+     +L      G    G+++HA  +   L  D+FVA
Sbjct: 83  LPREALAAFRAM-RARGVRCNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIFVA 138

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
             LV MYG  G +D+A  +F +  R  ++V WN ++S    + +   A+  F +M+  GV
Sbjct: 139 NALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGV 198

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           RP+   F  ++ AC+ S  +  G R  H M    G    +     +VD++ + G + MA 
Sbjct: 199 RPNEFGFSCVVNACTGSRDLEAG-RKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAA 257

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGN 517
                +P + D   W A +  C +HG+
Sbjct: 258 LVFGKVP-KTDVVSWNAFISGCVLHGH 283


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/708 (37%), Positives = 401/708 (56%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
            +I+   +CG   +A++ F +  L  GL PD  T   ++ AC     L  G+++H    KL
Sbjct: 320  LINGLSQCGYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL 378

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            GF  +  +  +LL++Y +      A   F +  V +   WN M+  Y    +   +  I 
Sbjct: 379  GFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 438

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++E +  +  T  SIL  C R  ++  G  IH  I+K   + N +V + LI+MYAK 
Sbjct: 439  RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKL 498

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A  +  +   +DVVSW ++IA Y Q N    A   F  M   GI+ D + L +  
Sbjct: 499  GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 558

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A L   +  + +H      G F  D+   NA+V +Y++ G I  +   FE     D 
Sbjct: 559  SACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 617

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            I+WN L++G+ Q+G   EA+ VF  M     I+ N  T+ S + A S    ++QG ++HA
Sbjct: 618  IAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETANMKQGKQVHA 676

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             + K     +  V   L+ MY KCG I DA   F +V   + V WNAII+ +  HG G +
Sbjct: 677  VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSE 736

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL+ F QM+   VRP+H+T V +L+ACSH GLV +G  YF  M  E+G+ P  +HY C+V
Sbjct: 737  ALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVV 796

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            D+  RAG L  A  FIQ MP++PDA +W  LL AC +H NME+G  A+  L E++ E+  
Sbjct: 797  DMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 856

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SN+YA   KW+  D  R   +++G+KK PG S IEV N +  FY G++ HP  ++
Sbjct: 857  TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 916

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I++  ++LT +   +GYV D   +L +++ ++K+ I+  HSE+LAI+FG++S P   PI 
Sbjct: 917  IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 976

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCH W KF+S+++ REIIVRD+ RFHHF+ G CSC DYW
Sbjct: 977  VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 248/503 (49%), Gaps = 12/503 (2%)

Query: 23  LTSGLRPDFYTFPPVLKACR------NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           ++  + P+  TF  VL+ACR      ++V+  +IH  +L  G      V   L+ +Y R 
Sbjct: 138 VSENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARILYQGLRDSTVVCNPLIDLYSRN 195

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  ++AR++FD + ++D  SW AMISG  ++    EA+ +  +M + G+   P   +S+L
Sbjct: 196 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 255

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C + +++  G  +H  ++K G   + +V N L+++Y   G +  A  +F  M +RD V
Sbjct: 256 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 315

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           ++N++I    Q      A   F  M   G++PD  TL SL    +        + +H + 
Sbjct: 316 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 375

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
            + G+   + I G A++++YAK   I +A   F    V++V+ WN ++  Y        +
Sbjct: 376 TKLGFASNNKIEG-ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 434

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
             +F+ M +  EI PNQ TY SIL     +G L  G +IH+++IK     + +V + L+D
Sbjct: 435 FRIFRQM-QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY K G++D A  +  +      V W  +I+ +  +   DKAL  FRQMLD G+R D + 
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
             + ++AC+    + EGQ+  H      G    L     +V L+ R G +  ++   +  
Sbjct: 554 LTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 612

Query: 497 PVRPDASIWGALLGACRIHGNME 519
               D   W AL+   +  GN E
Sbjct: 613 EA-GDNIAWNALVSGFQQSGNNE 634



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 255/514 (49%), Gaps = 10/514 (1%)

Query: 26  GLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+ P  Y F  VL AC+   +L  G+++H  VLKLGF  D +V  +L+ +Y   G    A
Sbjct: 243 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 302

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +F +M  RD+ ++N +I+G  Q G   +A+++   M L+G+  D  T+AS++  C+  
Sbjct: 303 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 362

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H Y  K G   N  +   L+N+YAK   +  AL  F +    +VV WN ++
Sbjct: 363 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 422

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
            AY   +D   +   F  MQ   I P+  T  S+     +L D      +H  I++   F
Sbjct: 423 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN-F 481

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +  + + ++DMYAKLG +++A  +      KDV+SW T+I GY Q     +A+  F+ 
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M +   I  ++    + + A + + AL++G +IHA+   +    D+     LV +Y +CG
Sbjct: 542 MLD-RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 600

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           +I+++   F Q     ++ WNA++S     G  ++AL  F +M  EG+  ++ TF S + 
Sbjct: 601 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 660

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           A S +  + +G++  H +  + G     +    ++ ++ + G +  A      +  + + 
Sbjct: 661 AASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 719

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           S W A++ A   HG    G+ A D   ++   NV
Sbjct: 720 S-WNAIINAYSKHG---FGSEALDSFDQMIHSNV 749



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 233/477 (48%), Gaps = 16/477 (3%)

Query: 26  GLRPDFYTFPPVLKACR----NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           G+RP+  T   +L+ C     +L +G+K+H  +LKLG + +  ++  L   Y   G    
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K+FD+MP R   +WN MI          E   +   M  E V+ +  T + +L  C R
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-R 157

Query: 142 SDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
             ++   ++  IH  I+  GL  +  V N LI++Y++ G +  A RVFD +  +D  SW 
Sbjct: 158 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+   ++     A   F  M   GI P      S+ S   ++        +HG +++ 
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 277

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  D  + NA+V +Y  LG + SA  +F  +  +D +++NTLI G +Q G   +A+E+
Sbjct: 278 G-FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 336

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M   + + P+  T  S++ A S  G L +G ++HA   K     +  +   L+++Y 
Sbjct: 337 FKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 395

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KC  I+ A+  F +    + V WN ++  +G+      +   FRQM  E + P+  T+ S
Sbjct: 396 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 455

Query: 440 LLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFI 493
           +L  C   G +  G++ +  +++  F     L  Y C  ++D++ + G L  A + +
Sbjct: 456 ILKTCIRLGDLELGEQIHSQIIKTNF----QLNAYVCSVLIDMYAKLGKLDTAWDIL 508


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/713 (38%), Positives = 409/713 (57%), Gaps = 40/713 (5%)

Query: 31  FYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD-DM 89
           F +    L +        K+H  ++ LG    V  +A L+  Y  F     +  +F    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P  +   WN++I     +G   EAL +  E +   +  D  T  S++  CA   +     
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS- 208
            IH  ++  G   +L++ N LI+MY +F  +  A +VF++M  RDVVSWNS+I+ Y  + 
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 209 --NDPITAH----GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             N+ +  +      F  M     +PDLLT+ S+      L D    + VH +++  G+ 
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D    N +++MYAK G + ++  VF G+  KD +SWN++I  Y QNG   ++++VF+ 
Sbjct: 255 C-DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFEN 313

Query: 323 M------------------EECN------------EINPNQGTYVSILPAYSHVGALRQG 352
           M                  E+CN             + P+  T +SILP  S + A RQG
Sbjct: 314 MKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 373

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IH  + K  L  DV V   L++MY KCG + ++  +F  +     V W A+IS  G++
Sbjct: 374 KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 433

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G+G KA+  F +M   G+ PDH+ FV+++ ACSHSGLV EG  YFH M++++ I+P ++H
Sbjct: 434 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 493

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y C+VDL  R+  L  A +FI +MP++PD+SIWGALL ACR+ G+ E+    S+R+ E++
Sbjct: 494 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELN 553

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            ++ GYYVL+SNIYA +GKW+ V  +R   + RGLKK PG S +E+ NKV +F TG +  
Sbjct: 554 PDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFF 613

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
            ++E++   L  L   M   GY+ +  FVL D++EDEK  IL  HSERLAIAFG++++ P
Sbjct: 614 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 673

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +P+Q+ KNLRVC DCH  TK+IS+I +RE++VRD+NRFH FKDG CSCGDYW
Sbjct: 674 GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 243/476 (51%), Gaps = 47/476 (9%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFV 65
           G  SEA+   Y  T    L+PD YTFP V+ AC  L+D    K IH  VL +GF  D+++
Sbjct: 94  GLFSEALS-LYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE---MRL 122
             +L+ MYCRF   + ARK+F++MP+RD  SWN++ISGY  +G   EAL+I  +   + +
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFM 212

Query: 123 EGVSM---DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF-- 177
           E V+    D +T+ SIL  C    ++  G  +H Y++  G E +   SN LINMYAK   
Sbjct: 213 EMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 272

Query: 178 -----------------------------GMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
                                        G M  +L+VF+ M  RD+++WN+IIA+   S
Sbjct: 273 LLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHS 332

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            D        + M+  G+ PD+ T++S+  + + L   R  + +HG I + G    DV +
Sbjct: 333 EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG-LESDVPV 391

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           GN +++MY+K G + ++  VF+ +  KDV++W  LI+     G   +A+  F  ME    
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG- 450

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDA 387
           I P+   +V+I+ A SH G + +G+    R+ K+  +   +    C+VD+  +   +D A
Sbjct: 451 IVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKA 510

Query: 388 MSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
                 +P +  S  W A++S   + G  + A     ++++  + PD   +  L++
Sbjct: 511 EDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE--LNPDDTGYYVLVS 564


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/705 (38%), Positives = 406/705 (57%), Gaps = 21/705 (2%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
            M+  +   GR S+A+  F +  L  G+ PD  T   VL      V    +H   +K G +
Sbjct: 325  MMRAHAAAGRTSDALSLF-RAMLGEGVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLD 381

Query: 61   WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
              VFV  +LL  YC+ GL   AR++F +M  +D+ ++NAM+ G  + G   +AL +   M
Sbjct: 382  THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 441

Query: 121  RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            R  G S  P+ +       +RS ++L                N+FV+N+L++ Y+K   +
Sbjct: 442  RRAGYSRHPLHLLQYSHSRSRSTSVL----------------NVFVNNSLLDFYSKCDCL 485

Query: 181  RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
                R+FD+M ERD VS+N IIAAY  +    T    F  MQ+ G    +L   ++ S+ 
Sbjct: 486  DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVA 545

Query: 241  AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
              L D    + +H  ++  G   ED ++GNA++DMY+K G++++A + F     K  ISW
Sbjct: 546  GSLPDVHIGKQIHAQLVLLGLASED-LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW 604

Query: 301  NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
              LITGY QNG   EA+++F  M     + P++ T+ SI+ A S +  +  G ++H+ +I
Sbjct: 605  TALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIGLGRQLHSYLI 663

Query: 361  KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            ++     VF  + LVDMY KCG +D+A+  F ++P  +S+ WNA+IS +  +G+   A+ 
Sbjct: 664  RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 723

Query: 421  FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             F  ML  G  PD +TF+S+L ACSH+GL  E  +YFH+M+ ++ I P  +HY C++D  
Sbjct: 724  MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 783

Query: 481  GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            GR G        +  MP + D  IW ++L +CRIHGN EL  VA+D+LF ++  +   YV
Sbjct: 784  GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYV 843

Query: 541  LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            ++SNIYA  G+WE    V+ + RDRG++K  G+S +E+  K+  F + + T P  ++I D
Sbjct: 844  ILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKD 903

Query: 601  ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            EL  L  +M   GY PD +  L  V+ + K   L  HSERLAIAF ++++P  +PI+I K
Sbjct: 904  ELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMK 963

Query: 661  NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            NL  C DCH   K IS+I  R+IIVRDS RFHHFKDG+CSCGDYW
Sbjct: 964  NLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 222/460 (48%), Gaps = 29/460 (6%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F    +L  Y   G    A+ LF   P R++ +W  M+  +  +G   +AL +   M 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 122 LEGVSMDPITVASI--LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            EGV  D +TV ++  LP C           +H + +K GL+ ++FV N L++ Y K G+
Sbjct: 347 GEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHGL 399

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVF +M ++D V++N+++    +      A   F  M++AG     L L+  +  
Sbjct: 400 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYS-- 457

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                   +SRS       R   + +V + N+++D Y+K   ++    +F+ +P +D +S
Sbjct: 458 --------HSRS-------RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 502

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           +N +I  YA N  A+  + +F+ M++    +     Y ++L     +  +  G +IHA++
Sbjct: 503 YNVIIAAYAWNQCAATVLRLFREMQKLG-FDRQVLPYATMLSVAGSLPDVHIGKQIHAQL 561

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +   L  +  +   L+DMY KCG +D A S F      S++ W A+I+ +  +GQ ++AL
Sbjct: 562 VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 621

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M   G+RPD  TF S++ A S   ++  G R  H      G K  +     +VD+
Sbjct: 622 QLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDM 680

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           + + G L  A      MP R   S W A++ A   +G  +
Sbjct: 681 YAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAK 719



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 159/370 (42%), Gaps = 50/370 (13%)

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQ------------- 223
           G +  A  +FDQM  +++ S N I++AY  S D P   H F ++  +             
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 224 -AGIQPDLLTL-------------VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
            AG   D L+L             V++T+++  L  C    S+H F ++ G     V + 
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVL-NLPGC-TVPSLHPFAIKFG-LDTHVFVC 387

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++D Y K G++ +A  VF  +  KD +++N ++ G ++ GL ++A+++F  M      
Sbjct: 388 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA--- 444

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
                 +   L  YSH  +            ++    +VFV   L+D Y KC  +DD   
Sbjct: 445 --GYSRHPLHLLQYSHSRS------------RSTSVLNVFVNNSLLDFYSKCDCLDDMRR 490

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF ++P   +V +N II+ +  +      L  FR+M   G     + + ++L+       
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V  G++  H      G+         ++D++ + G L  A +   N   +   S W AL+
Sbjct: 551 VHIGKQ-IHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS-WTALI 608

Query: 510 GACRIHGNME 519
                +G  E
Sbjct: 609 TGYVQNGQHE 618


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/709 (37%), Positives = 408/709 (57%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI---HCSVLKL 57
           +I  Y +  +  EA + F Q     G  PD+ TF  +L  C     G +I      ++KL
Sbjct: 120 LIGGYSQLNQFKEAFELFVQMQ-RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL 178

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  + V  +L+  YC+    ++A +LF +MP  DS S+NAMI+GY + G   +A+++ 
Sbjct: 179 GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF 238

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+  G+     T A++L      D+I+ G  IH +++K    +N+FVSN L++ Y+K 
Sbjct: 239 VEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 298

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++FD+M E+D VS+N II+ Y        A   F  +Q            ++ 
Sbjct: 299 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 358

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +   D    R +H   +      E +++GN++VDMYAK G    A  +F  L  +  
Sbjct: 359 SIASNTLDWEMGRQIHAQTIVTTADSE-ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 417

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q G   E +++F  M + + I  +Q T+ S+L A + + +L  G ++H+
Sbjct: 418 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVI-ADQATFASLLRASASIASLSLGKQLHS 476

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK+    +VF  + L+D+Y KCG I DA+  F ++P  + V WNA+IS +  +G+ + 
Sbjct: 477 FIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEA 536

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F++M+  G++PD ++F+ +L+ACSHSGLV EG  +F+ M + + + P  +HY  +V
Sbjct: 537 TLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVV 596

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D+  R+G    A   +  MP+ PD  +W ++L ACRIH N EL   A+D+LF ++   + 
Sbjct: 597 DMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA 656

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  G+WE V +V    RDRG+KK P +S +E+ ++  +F   +R HP+ E
Sbjct: 657 APYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIE 716

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  ++  LT  M+ LGY PD S  L + +E  K   L  HSERLAIAF +IS+P  SPI
Sbjct: 717 EIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPI 776

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K IS+I  REI VRDS RFHHF+DG CSCGD+W
Sbjct: 777 LVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 221/447 (49%), Gaps = 4/447 (0%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    ARKLFD M  R + +W  +I GY Q     EA ++  +M+  G   D +T 
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            ++L  C   +       +   I+K G +  L V N L++ Y K   +  A ++F +M E
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE 212

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            D VS+N++I  Y +      A   F  MQ +G++P   T  ++      L+D    + +
Sbjct: 213 IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQI 272

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H F+++   F+ +V + NA++D Y+K   +  A  +F+ +P +D +S+N +I+GYA +G 
Sbjct: 273 HSFVIKTN-FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 331

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
              A ++F+ + +    +  Q  + ++L   S+      G +IHA+ I      ++ V  
Sbjct: 332 HKYAFDLFREL-QFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN 390

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LVDMY KCG+ ++A  +F  +   S+VPW A+IS +   G  ++ L  F +M    V  
Sbjct: 391 SLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIA 450

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  TF SLL A +    +S G++  H    + G   ++     ++D++ + G +  A   
Sbjct: 451 DQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQT 509

Query: 493 IQNMPVRPDASIWGALLGACRIHGNME 519
            Q MP R   S W A++ A   +G  E
Sbjct: 510 FQEMPDRNIVS-WNAMISAYAQNGEAE 535



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 4/359 (1%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N   +N +I+ Y K G +  A ++FD M+ER  V+W  +I  Y Q N    A   F  MQ
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G +PD +T V+L S             V   I++ G +   +I+GN +VD Y K   +
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRL 200

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           + AC +F+ +P  D +S+N +ITGY+++GL  +A+ +F  M+    + P + T+ ++L A
Sbjct: 201 DLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG-LKPTEFTFAAVLCA 259

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
              +  +  G +IH+ VIK    ++VFV+  L+D Y K   + DA  LF ++P    V +
Sbjct: 260 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 319

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           N IIS +   G+   A + FR++           F ++L+  S++ L  E  R  H    
Sbjct: 320 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT-LDWEMGRQIHAQTI 378

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
                  +     +VD++ + G    A     N+  R  A  W A++ A    G  E G
Sbjct: 379 VTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMISAYVQKGFYEEG 436



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 3/186 (1%)

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
           ++ +  N ++  Y K G +  A  +F+G+  +  ++W  LI GY+Q     EA E+F  M
Sbjct: 81  KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 140

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           + C    P+  T+V++L   +      Q  ++  ++IK      + V   LVD Y K  R
Sbjct: 141 QRCG-TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +D A  LF ++P   SV +NA+I+ +   G  +KA+N F +M + G++P   TF ++L  
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL-- 257

Query: 444 CSHSGL 449
           C++ GL
Sbjct: 258 CANIGL 263


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/684 (39%), Positives = 400/684 (58%), Gaps = 77/684 (11%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +L+S    ++  +P +L +C++L    +IH  ++  GF+    +   L+++Y  F   ++
Sbjct: 43  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDL 101

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +FD  P      WN+MI  Y +S    EAL+                          
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALE-------------------------- 135

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
                   + +  + K GLE ++F+   L++MY+K G ++ A  VFD+M +RDVV+WN++
Sbjct: 136 --------MYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 187

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA   QS DP  A   F  M     Q D    VS  +++A            G+    G 
Sbjct: 188 IAGLSQSEDPYVARRVFDQMVD---QDD----VSWGTMMA------------GYA-HNGC 227

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F+E       V++++ K+ + N              ++WN +I  Y QNG A EAI  F 
Sbjct: 228 FVE-------VLELFDKMKLGN--------------VTWNVIIAAYMQNGHAKEAISSFH 266

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M   N  +PN  T+VS+LPA +++ A R+G+  HA +I+     +  V   L+DMY KC
Sbjct: 267 QMRLEN-FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 325

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G++D +  LF ++    +V WNA++S + +HG GD+A+  F  M +  V+ D ++FVS+L
Sbjct: 326 GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVL 385

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +AC H+GLV EG++ FH M +++ IKP L+HY CMVDL GRAG       FI+ MPV PD
Sbjct: 386 SACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPD 445

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A +WGALLG+CR+H N++LG VA D L +++  N  ++V++S+IYA  G+W    + RS 
Sbjct: 446 AGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSK 505

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
             D GLKKTPG S +E+ NKV  F  G+++HP+ E ++     L  KM+ +GYVPD+S V
Sbjct: 506 MNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCV 565

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           LQ+VEE++KE  L SHSERLAI F ++++PP S IQI KNLRVC DCH  TKFIS+IT R
Sbjct: 566 LQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTR 625

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
            IIVRD+ RFHHF+DGICSC DYW
Sbjct: 626 RIIVRDATRFHHFEDGICSCNDYW 649



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 32/335 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI  Y R  + +EA++ +Y      GL  D +    ++     + D K+      K+  +
Sbjct: 120 MIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-K 178

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD-- 118
            DV    +++    +     VAR++FD M  +D  SW  M++GY  +G  VE L++ D  
Sbjct: 179 RDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 238

Query: 119 ----------------------------EMRLEGVSMDPITVASILPVCARSDNILSGLL 150
                                       +MRLE    + +T  S+LP  A       G+ 
Sbjct: 239 KLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 298

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
            H  I++ G   N  V N+LI+MYAK G + ++ ++F++M  +D VSWN++++ Y     
Sbjct: 299 FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGH 358

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F+ MQ++ +Q D ++ VS+ S           R +   +  +     D+    
Sbjct: 359 GDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYA 418

Query: 271 AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
            +VD+  + G+ +      + +PV+ D   W  L+
Sbjct: 419 CMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 453


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/709 (38%), Positives = 408/709 (57%), Gaps = 38/709 (5%)

Query: 33  TFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFDDM 89
           T P ++  C N    K++H  +L+ G  +D   +A+ L   C        + A K+FD +
Sbjct: 32  TVPILIDKCANKKHLKQLHAHMLRTGLFFDP-PSATKLFTACALSSPSSLDYACKVFDQI 90

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSG 148
           P  +  +WN +I  +  S   ++ L +  +M  E     +  T   ++       ++L+G
Sbjct: 91  PRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAG 150

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH  ++K     +LF+SN+LI+ Y+  G +  A  VF +++E+D+VSWNS+I+ + Q 
Sbjct: 151 QAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQG 210

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
             P  A   F  M+    +P+ +T+V + S  A+  D    R    +I R G  + ++I+
Sbjct: 211 GSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI-NLIL 269

Query: 269 GNAVVDMY-------------------------------AKLGIINSACAVFEGLPVKDV 297
            NA++DMY                               AK+G  ++A  VF+ +P +D+
Sbjct: 270 SNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI 329

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +WN LI+ Y QNG   EA+ +F+ ++      PN+ T  S L A + +GA+  G  IH 
Sbjct: 330 TAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHV 389

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + K  +  +  + T L+DMY KCG ++ A+ +FY V R     W+A+I+   +HG G  
Sbjct: 390 YIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRA 449

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M +  V+P+ +TF +LL ACSHSGLV EG+ +F+ M+  +G+ P  KHY CMV
Sbjct: 450 AIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMV 509

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG L  A   I+ MP+ P AS+WGALLGACRI+GN+EL  +A  RL E DS N G
Sbjct: 510 DILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHG 569

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SNIYA  GKW+ V  +R   +  GL+K PG SSIEVN  +  F  G+ +HP   +
Sbjct: 570 AYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTE 629

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE-KEHILTSHSERLAIAFGIISSPPKSPI 656
           IY +L  + A++KS GYV D+S +LQ VEE+  KEH L  HSE+LAIA+G+I   P  PI
Sbjct: 630 IYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPI 689

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCH+  K IS++  R+I++RD  RFHHF  G CSC DYW
Sbjct: 690 RIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 236/461 (51%), Gaps = 51/461 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  +    +  + +  F Q    S   P+ YTFP V+KA     +L+ G+ IH  V+K 
Sbjct: 101 LIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKA 160

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  D+F++ SL+H Y   G  + A  +F  +  +D  SWN+MISG+ Q G+  EAL + 
Sbjct: 161 SFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLF 220

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M++E    + +T+  +L  CA+  ++  G     YI ++G++ NL +SN +++MY K 
Sbjct: 221 KRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKC 280

Query: 178 GMMRHALRVFDQMMERDVVS-------------------------------WNSIIAAYE 206
           G +  A R+FD+M E+D+VS                               WN++I++Y+
Sbjct: 281 GSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQ 340

Query: 207 QSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
           Q+  P  A   F  +Q     +P+ +TL S  +  AQL        +H +I ++G  + +
Sbjct: 341 QNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL-N 399

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             I  +++DMY+K G +  A  VF  +  +DV  W+ +I G A +G    AI++F  M+E
Sbjct: 400 FHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQE 459

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVFVAT----CLVDMYG 379
             ++ PN  T+ ++L A SH G + +G     R+  N +   + V   +    C+VD+ G
Sbjct: 460 -TKVKPNAVTFTNLLCACSHSGLVDEG-----RLFFNQMRPVYGVVPGSKHYACMVDILG 513

Query: 380 KCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 418
           + G +++A+ L  ++P   S+SV W A++    I+G  + A
Sbjct: 514 RAGCLEEAVELIEKMPIVPSASV-WGALLGACRIYGNVELA 553


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/574 (44%), Positives = 362/574 (63%), Gaps = 3/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + SIL  CA   ++  G  +H   VK  + +     N L++MYAK G++  A+ VFD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            R VV+W S+IAAY +      A   F  M + G+ PD+ T+ ++    A      N + 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH +I R      ++ + NA++DMYAK G +  A +VF  +PVKD+ISWNT+I GY++N 
Sbjct: 121 VHNYI-RENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           L +EA+ +F  M    E+ P+  T   ILPA + + +L +G ++H  +++N    D  VA
Sbjct: 180 LPNEALSLFGDM--VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             LVDMY KCG    A  LF  +P    + W  +I+ +G+HG G+ A+  F +M   G+ 
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PD ++F+S+L ACSHSGL+ EG R+F++MQ+E  +KP L+HY C+VDL  R+G L MA+ 
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI++MP+ PDA+IWGALL  CRIH +++L    ++ +FE++ EN GYYVL++N YA   K
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEK 417

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           WE V ++R     RGLKK PG S IEV +KV IF  GN +HP+ +KI   L+ L +KMK 
Sbjct: 418 WEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKE 477

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY P   + L + +  +KE  L  HSE+LA+AFGI++ PP   I++ KNLRVCGDCH  
Sbjct: 478 EGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEM 537

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KFIS+   REI++RDSNRFHHFKDG+C C  +W
Sbjct: 538 AKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 231/444 (52%), Gaps = 13/444 (2%)

Query: 37  VLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC N  D   G+ +H S +K    W      +LL MY + G+ + A  +FD M VR 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             +W ++I+ Y + G + EA+ +  EM  EGVS D  T+ ++L  CA + ++ +G  +H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           YI ++ ++ N+FV N L++MYAK G M  A  VF +M  +D++SWN++I  Y +++ P  
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M    ++PD  TL  +    A L      + VHG I+R G+F  D  + NA+V
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFF-SDQQVANALV 241

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMY K G+   A  +F+ +P KD+I+W  +I GY  +G  + AI  F  M +   I P++
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAG-IEPDE 300

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            +++SIL A SH G L +G +    +   C +   +    C+VD+  + G++  A     
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 393 QVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            +P    +  W A++S   IH     A      + +  + P++  +  LL   +++   +
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFE--LEPENTGYYVLL---ANTYAEA 415

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGC 475
           E       ++++ G +   K+ GC
Sbjct: 416 EKWEEVKKLRQKIGRRGLKKNPGC 439



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 188/381 (49%), Gaps = 50/381 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +I+ Y R G   EA+  F++     G+ PD +T   VL AC    +L +GK +H  + + 
Sbjct: 70  LIAAYAREGLSDEAIRLFHEMD-REGVSPDIFTITTVLHACACNGSLENGKDVHNYIREN 128

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + ++FV  +L+ MY + G    A  +F +MPV+D  SWN MI GY ++    EAL + 
Sbjct: 129 DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLF 188

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M LE +  D  T+A ILP CA   ++  G  +H +I+++G   +  V+N L++MY K 
Sbjct: 189 GDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKC 247

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQ---SNDPITAHGFFTTMQQAGIQPDLLTLV 234
           G+   A  +FD +  +D+++W  +IA Y      N+ IT    F  M+QAGI+PD ++ +
Sbjct: 248 GVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITT---FNEMRQAGIEPDEVSFI 304

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIIN 283
           S+      L  C      H  ++  GW   +V+               +VD+ A+ G + 
Sbjct: 305 SI------LYACS-----HSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLA 353

Query: 284 SACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQGTYVS 338
            A    + +P++ D   W  L++G   +    LA +  E VF++  E      N G YV 
Sbjct: 354 MAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPE------NTGYYVL 407

Query: 339 ILPAYS------HVGALRQGI 353
           +   Y+       V  LRQ I
Sbjct: 408 LANTYAEAEKWEEVKKLRQKI 428


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/739 (37%), Positives = 433/739 (58%), Gaps = 37/739 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y   G  +EA+  F +  + SG+ PD YTFP  L AC   R   +G +IH  ++K+
Sbjct: 105 LIRGYASSGLCNEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKM 163

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  D+FV  SL+H Y   G  + ARK+FD+M  R+  SW +MI GY +   A +A+D+ 
Sbjct: 164 GYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLF 223

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M R E V+ + +T+  ++  CA+ +++ +G  ++ +I   G+E N  + + L++MY K
Sbjct: 224 FRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A R+FD+    ++   N++ + Y +      A G F  M  +G++PD ++++S 
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----------------- 279
            S  +QL +    +S HG+++R G+   D I  NA++DMY K                  
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 280 --------------GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
                         G +++A   FE +P K+++SWNT+I+G  Q  L  EAIEVF  M+ 
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              +N +  T +SI  A  H+GAL     I+  + KN +  DV + T LVDM+ +CG  +
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            AMS+F  +       W A I    + G  ++A+  F  M+++G++PD + FV  LTACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV +G+  F+ M +  G+ P   HYGCMVDL GRAG L  A   I++MP+ P+  IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            +LL ACR+ GN+E+ A A++++  +  E  G YVL+SN+YA+ G+W  + +VR   +++
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GL+K PG SSI++  K   F +G+ +HP+   I   L  ++ +   LG+VPD S VL DV
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E EK  +L+ HSE+LA+A+G+ISS   + I+I KNLRVC DCH++ KF S++  REII+
Sbjct: 763 DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIIL 822

Query: 686 RDSNRFHHFKDGICSCGDY 704
           RD+NRFH+ + G CSCGD+
Sbjct: 823 RDNNRFHYIRQGKCSCGDF 841



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 246/508 (48%), Gaps = 41/508 (8%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFDDMPV 91
           P  LK C+ + + K  H S+ K G + DV     L+   C  G     + A+++F++   
Sbjct: 36  PSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95

Query: 92  RDSG-SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             +   +N++I GY  SG   EA+ +   M   G+S D  T    L  CA+S    +G+ 
Sbjct: 96  YGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ 155

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  IVK G   +LFV N+L++ YA+ G +  A +VFD+M ER+VVSW S+I  Y + + 
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 211 PITAHG-FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
              A   FF  ++   + P+ +T+V + S  A+L D      V+ FI   G  + D+++ 
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV- 274

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           +A+VDMY K   I+ A  +F+     ++   N + + Y + GL  EA+ VF +M +   +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG-V 333

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ + +S + + S +  +  G   H  V++N       +   L+DMY KC R D A  
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD---------------------- 427
           +F ++   + V WN+I++ +  +G+ D A   F  M +                      
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453

Query: 428 ----------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
                     EGV  D +T +S+ +AC H G +   +  ++ + E+ GI+  ++    +V
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI-EKNGIQLDVRLGTTLV 512

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           D+F R G    A +   ++  R D S W
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNR-DVSAW 539


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/704 (38%), Positives = 407/704 (57%), Gaps = 36/704 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDS 94
           ++  C      K+IH  +L+ G  +D F A+ L+       F   + A+++FD +P  + 
Sbjct: 41  LIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNL 100

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHL 153
            +WN +I  Y  S N  ++L I   M  +     D  T   ++   +  + + +G   H 
Sbjct: 101 YTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHG 160

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            ++K  L  ++F+ N+LI+ YAK G +    RVF  +  RDVVSWNS+I A+ Q   P  
Sbjct: 161 MVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEE 220

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M+   ++P+ +T+V + S  A+ +D    R VH +I  R    E + + NA++
Sbjct: 221 ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI-ERNRIGESLTLSNAML 279

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA------------------------- 308
           DMY K G +  A  +F+ +P KD++SW T++ GYA                         
Sbjct: 280 DMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNA 339

Query: 309 ------QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
                 Q G   EA+E+F  ++      P++ T VS L A + +GA+  G  IH  + K 
Sbjct: 340 LISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ 399

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            +  +  + T L+DMY KCG +  A+ +F+ V R     W+A+I+   +HG G  A+  F
Sbjct: 400 GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALF 459

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +M ++ V+P+ +TF ++L ACSH GLV EG+ +F+ M+  +G+ P +KHY CMVD+ GR
Sbjct: 460 SKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGR 519

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG L  A   I+ MP+ P AS+WGALLGAC IH N+ L   A  +L E++  N G YVL+
Sbjct: 520 AGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLL 579

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SNIYA  GKW+ V  +R L RD GLKK PG SSIEV+  V  F  G+ +HP  +KIY +L
Sbjct: 580 SNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKL 639

Query: 603 RNLTAKMKSLGYVPDKSFVLQDV-EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
             + A+++++GYVP+KS +LQ V EED KE  L  HSE+LAIAFG+IS+    PI+I KN
Sbjct: 640 DEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKN 699

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCGDCH+  K +S++ +REI++RD  RFHHF++G CSC DYW
Sbjct: 700 LRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 229/452 (50%), Gaps = 45/452 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y       +++  F +    S   PD +TFP ++KA   L +   GK  H  V+K+
Sbjct: 106 LIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKV 165

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVF+  SL+H Y + G   +  ++F ++P RD  SWN+MI+ + Q G   EAL++ 
Sbjct: 166 LLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELF 225

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  + V  + IT+  +L  CA+  +   G  +H YI ++ +  +L +SN +++MY K 
Sbjct: 226 QEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKC 285

Query: 178 GMMRHALRVFDQMMERDVVS-------------------------------WNSIIAAYE 206
           G +  A R+FD+M E+D+VS                               WN++I+AYE
Sbjct: 286 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYE 345

Query: 207 QSNDPITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
           Q   P  A   F  +Q +   +PD +TLVS  S  AQL        +H +I ++G  + +
Sbjct: 346 QCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL-N 404

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  +++DMY K G +  A  VF  +  KDV  W+ +I G A +G   +AI +F  M+E
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKC 381
            +++ PN  T+ +IL A SHVG + +G     ++    L + V        C+VD+ G+ 
Sbjct: 465 -DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME---LVYGVLPGVKHYACMVDILGRA 520

Query: 382 GRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
           G +++A+ L  ++P + +   W A++    IH
Sbjct: 521 GLLEEAVELIEKMPMAPAASVWGALLGACTIH 552


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/708 (38%), Positives = 407/708 (57%), Gaps = 5/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFY--QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLG 58
            MIS Y   G   E++ CF+  +            +   V  +  NL  G+ IH  V+KLG
Sbjct: 1019 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 1078

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             + +V +  +LL +Y   G +  A  +F  M  RD  SWN+M++ Y Q G  ++ L IL 
Sbjct: 1079 LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILA 1138

Query: 119  EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            E+   G  M+ +T AS L  C+  + ++   ++H  I+  G    L V N L+ MY K G
Sbjct: 1139 ELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLG 1198

Query: 179  MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            MM  A +V   M + D V+WN++I  + ++ +P  A   +  +++ GI  + +T+VS+  
Sbjct: 1199 MMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLG 1258

Query: 239  IVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +  +D  ++   +H  I+  G F  D  + N+++ MYAK G +NS+  +F+GL  K  
Sbjct: 1259 ACSAPDDLLKHGMPIHAHIVLTG-FESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP 1317

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            I+WN ++   A +G   EA+++F  M     +N +Q ++   L A +++  L +G ++H 
Sbjct: 1318 ITWNAMVAANAHHGCGEEALKIFGEMRNVG-VNLDQFSFSGGLAATANLAVLEEGQQLHG 1376

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             VIK     D+ V    +DMYGKCG + D + +  Q    S + WN +IS    HG   K
Sbjct: 1377 LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQK 1436

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A   F +ML  G +PDH+TFVSLL+AC+H GLV EG  Y+  M  EFG+ P ++H  C++
Sbjct: 1437 ARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCII 1496

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GR+G L  A  FI+ MPV P+   W +LL ACRIHGN+EL    ++ L E+D  +  
Sbjct: 1497 DLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS 1556

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL SN+ A  GKWE V+ +R       +KK P  S +++ +KV  F  G + HP+  +
Sbjct: 1557 AYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASR 1616

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I  +L  L    K  GYVPD SF L D++E++KE+ L +HSERLA+AFG+I++P  S ++
Sbjct: 1617 ISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLR 1676

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            IFKNLRVCGDCH+  KF+S I  R+I++RD  RFHHF  G CSCGDYW
Sbjct: 1677 IFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 315/577 (54%), Gaps = 10/577 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           GRL+EA+    +   ++  R D   +  +L+ C   +    G  IH  ++  GF  D+ +
Sbjct: 12  GRLAEAL----KLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+  Y + G    AR +FD MP R   SW AM+SGY Q+G   +A  +  +MR  GV
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +  T  S L  C     +  G+ +   I K     NLFV + L++ ++K G M  A  
Sbjct: 128 KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASY 187

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F  MMERDVVSWN++I  Y        +   F +M + G+ PD  TL S+    A+   
Sbjct: 188 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGG 247

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
              +  +HG I + G+   D++ G  +++ YAK G + SA  + +G+  KD+ S   LIT
Sbjct: 248 LIIANQIHGIITQLGYGSYDIVTG-LLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALIT 306

Query: 306 GYAQNGLAS-EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           GYA  G+ S +A+++F+ M + N I  +     S+L   +++ +   G +IHA  +K   
Sbjct: 307 GYAHEGIYSVDALDLFKEMNQMN-IGMDDVILCSMLNICANLASFALGTQIHAFALKYQP 365

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
            +DV +   L+DMY K G I+DA   F ++   + + W ++IS +  HG G  A++ +++
Sbjct: 366 SYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKK 425

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M  +G +P+ +TF+SLL ACSH+GL +EG   F+ M  ++ IKP  +HY CMVDLF R G
Sbjct: 426 MESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQG 485

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            L  A+N +  + ++ +AS+WGA+LGA  I+G M LG  A+  LF +  EN   YV++++
Sbjct: 486 LLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLAS 545

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
           IY+  G W+   ++R L  +R  KK  G+S  +   K
Sbjct: 546 IYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/522 (29%), Positives = 277/522 (53%), Gaps = 12/522 (2%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
            M+S YVR G   EAV  F Q     G+ P+ +    ++ AC        +G ++H  V+K
Sbjct: 816  MLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 874

Query: 57   LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
             G   DV+V  +L+H Y   GL   A+KLF++MP  +  SW +++ GY  SGN  E L++
Sbjct: 875  TGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNV 934

Query: 117  LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
               MR EGVS +  T A++   C   ++ + G  +  +I+++G E ++ V+N+LI+M++ 
Sbjct: 935  YQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSS 994

Query: 177  FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            F  +  A  VFD M E D++SWN++I+AY        +   F  M+    + +  TL SL
Sbjct: 995  FSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSL 1054

Query: 237  TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
             S+ + +++ +  R +HG +++ G    +V I N ++ +Y++ G    A  VF+ +  +D
Sbjct: 1055 LSVCSSVDNLKWGRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERD 1113

Query: 297  VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +ISWN+++  Y Q+G   + +++   + +  ++  N  T+ S L A S+   L +   +H
Sbjct: 1114 LISWNSMMACYVQDGKCLDGLKILAELLQMGKV-MNHVTFASALAACSNPECLIESKIVH 1172

Query: 357  ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            A +I       + V   LV MYGK G + +A  +   +P+   V WNA+I  H  + + +
Sbjct: 1173 ALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPN 1232

Query: 417  KALNFFRQMLDEGVRPDHITFVSLLTACSH-SGLVSEGQR-YFHMMQEEFGIKPHLKHYG 474
            +A+  ++ + ++G+  ++IT VS+L ACS    L+  G   + H++   F    ++K+  
Sbjct: 1233 EAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKN-- 1290

Query: 475  CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             ++ ++ + G L  + N+I +         W A++ A   HG
Sbjct: 1291 SLITMYAKCGDLN-SSNYIFDGLGNKSPITWNAMVAANAHHG 1331



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 240/466 (51%), Gaps = 5/466 (1%)

Query: 47   GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            GK +H   +       +F   +L++MY +FG    AR +FD+M  R+  SW+ M+SGY +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 107  SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLF 165
             G   EA+ +  +M   GV  +   VAS++  C+RS  +   G  +H ++VK G+  +++
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
            V   L++ Y   G++ +A ++F++M + +VVSW S++  Y  S +P      +  M+Q G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 226  IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
            +  +  T  ++TS    L D      V G I++ G F + V + N+++ M++    +  A
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEA 1001

Query: 286  CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
            C VF+ +   D+ISWN +I+ YA +GL  E++  F  M   +    N  T  S+L   S 
Sbjct: 1002 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN-ETNSTTLSSLLSVCSS 1060

Query: 346  VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            V  L+ G  IH  V+K  L  +V +   L+ +Y + GR +DA  +F  +     + WN++
Sbjct: 1061 VDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSM 1120

Query: 406  ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
            ++C+   G+    L    ++L  G   +H+TF S L ACS+   + E  +  H +    G
Sbjct: 1121 MACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAG 1179

Query: 466  IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
                L     +V ++G+ G +  A   +Q MP +PD   W AL+G 
Sbjct: 1180 FHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 185/371 (49%), Gaps = 6/371 (1%)

Query: 146  LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
            ++G  +H + +   +   +F +N LINMY+KFG + HA  VFD+M  R+  SW+++++ Y
Sbjct: 761  MAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 820

Query: 206  EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR-SVHGFIMRRGWFME 264
             +      A G F  M   G++P+   + SL +  ++     +    VHGF+++ G  + 
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTG-ILG 879

Query: 265  DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
            DV +G A+V  Y  +G++ +A  +FE +P  +V+SW +L+ GY+ +G   E + V+Q M 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 939

Query: 325  ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
            +   ++ NQ T+ ++  +   +     G ++   +I+      V VA  L+ M+     +
Sbjct: 940  Q-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 998

Query: 385  DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
            ++A  +F  +     + WNA+IS +  HG   ++L  F  M       +  T  SLL+ C
Sbjct: 999  EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 1058

Query: 445  SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
            S    +  G R  H +  + G+  ++     ++ L+  AG    A    Q M  R D   
Sbjct: 1059 SSVDNLKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTER-DLIS 1116

Query: 505  WGALLGACRIH 515
            W +++ AC + 
Sbjct: 1117 WNSMM-ACYVQ 1126



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L  +S + +   G  +HA  I   +   +F    L++MY K G I+ A  +F ++   + 
Sbjct: 751 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
             W+ ++S +   G  ++A+  F QM   GV P+     SL+TACS SG +++     H 
Sbjct: 811 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
              + GI   +     +V  +G  G +  A    + MP     S W +L+      GN
Sbjct: 871 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVS-WTSLMVGYSDSGN 927


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/708 (37%), Positives = 402/708 (56%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +I+   +CG   +A++ F +  L  GL PD  T   ++ AC +   L  G+++H    KL
Sbjct: 343  LINGLSQCGYGEKAMELFKRMQL-DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL 401

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            GF  +  +  +LL++Y +      A   F +  V +   WN M+  Y    +   +  I 
Sbjct: 402  GFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 461

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++E +  +  T  SIL  C R  ++  G  IH  I+K   + N +V + LI+MYAK 
Sbjct: 462  RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKL 521

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A  +  +   +DVVSW ++IA Y Q N    A   F  M   GI+ D + L +  
Sbjct: 522  GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 581

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A L   +  + +H      G F  D+   NA+V +Y+K G I  A   FE     D 
Sbjct: 582  SACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN 640

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            I+WN L++G+ Q+G   EA+ VF  M     I+ N  T+ S + A S    ++QG ++HA
Sbjct: 641  IAWNALVSGFQQSGNNEEALRVFARMNR-EGIDSNNFTFGSAVKAASETANMKQGKQVHA 699

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             + K     +  V   ++ MY KCG I DA   F ++   + V WNA+I+ +  HG G +
Sbjct: 700  VITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSE 759

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL+ F QM+   VRP+H+T V +L+ACSH GLV +G  YF  M  E+G+ P  +HY C+V
Sbjct: 760  ALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVV 819

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            D+  RAG L  A +FI  MP+ PDA +W  LL AC +H NME+G  A+  L E++ E+  
Sbjct: 820  DMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 879

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SN+YA   KW+  D  R   +++G+KK PG S IEV N +  FY G++ HP  ++
Sbjct: 880  TYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 939

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I++  ++LT +   +GYV D   +L ++++++K+  +  HSE+LAI+FG++S P   PI 
Sbjct: 940  IHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPIN 999

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCH+W KF+S+++ REIIVRD+ RFHHF+ G CSC DYW
Sbjct: 1000 VMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 171/602 (28%), Positives = 287/602 (47%), Gaps = 24/602 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR------NLVDGKKIHCSVLKLGFEWDVF 64
           LS  V C +   +   + P+  TF  VL+ACR      ++V+  +IH  ++  G      
Sbjct: 149 LSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARIIYQGLGKSTI 206

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           V   L+ +Y R G  + AR++FD + ++D  SW AMISG  ++   VEA+ +  +M + G
Sbjct: 207 VCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLG 266

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           +   P   +S+L  C + +++  G  +H  ++K G   + +V N L+++Y   G +  A 
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAE 326

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
            +F  M +RD V++N++I    Q      A   F  MQ  G++PD  TL SL    +   
Sbjct: 327 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
              + + +H +  + G+   D I G A++++YAK   I +A   F    V++V+ WN ++
Sbjct: 387 TLFSGQQLHAYTTKLGFASNDKIEG-ALLNLYAKCSDIETALNYFLETEVENVVLWNVML 445

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
             Y        +  +F+ M +  EI PNQ TY SIL     +G L  G +IH+++IK   
Sbjct: 446 VAYGLLDDLRNSFRIFRQM-QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF 504

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             + +V + L+DMY K G++D A  +  +      V W  +I+ +  +   DKAL  FRQ
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           MLD G+R D +   + ++AC+    + EGQ+  H      G    L     +V L+ + G
Sbjct: 565 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTLYSKCG 623

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSEN--VGYYV 540
           ++  A+   +      D   W AL+   +  GN E       R+    +DS N   G  V
Sbjct: 624 NIEEAYLAFEQTEA-GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAV 682

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
             ++  AN+ + + V  V        + KT   S  EV N +   Y    +    +K + 
Sbjct: 683 KAASETANMKQGKQVHAV--------ITKTGYDSETEVCNAIISMYAKCGSISDAKKQFL 734

Query: 601 EL 602
           EL
Sbjct: 735 EL 736



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 257/514 (50%), Gaps = 10/514 (1%)

Query: 26  GLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+ P  Y F  VL AC+   +L  G+++H  VLKLGF  D +V  +L+ +Y   G    A
Sbjct: 266 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISA 325

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +F +M  RD+ ++N +I+G  Q G   +A+++   M+L+G+  D  T+AS++  C+  
Sbjct: 326 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSD 385

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             + SG  +H Y  K G   N  +   L+N+YAK   +  AL  F +    +VV WN ++
Sbjct: 386 GTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVML 445

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
            AY   +D   +   F  MQ   I P+  T  S+     +L D      +H  I++   F
Sbjct: 446 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS-F 504

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +  + + ++DMYAKLG +++A  +      KDV+SW T+I GY Q     +A+  F+ 
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M +   I  ++    + + A + + AL++G +IHA+   +    D+     LV +Y KCG
Sbjct: 565 MLD-RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCG 623

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            I++A   F Q     ++ WNA++S     G  ++AL  F +M  EG+  ++ TF S + 
Sbjct: 624 NIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVK 683

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           A S +  + +G++  H +  + G     +    ++ ++ + G +  A      + ++ + 
Sbjct: 684 AASETANMKQGKQ-VHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEV 742

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           S W A++ A   HG    G+ A D   ++   NV
Sbjct: 743 S-WNAMINAYSKHG---FGSEALDSFDQMIHSNV 772



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 239/477 (50%), Gaps = 16/477 (3%)

Query: 26  GLRPDFYTFPPVLKACR----NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           G+RP+  T   +L+ C     +L +G+K+H  +LKLGF+ +  ++  LL  Y   G  + 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K+FD+MP R   +WN MI        + +   +   M  E V+ +  T + +L  C R
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-R 180

Query: 142 SDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
             ++   ++  IH  I+  GL  +  V N LI++Y++ G +  A RVFD +  +D  SW 
Sbjct: 181 GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+   ++   + A   F  M   GI P      S+ S   ++        +HG +++ 
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  D  + NA+V +Y  LG + SA  +F  +  +D +++NTLI G +Q G   +A+E+
Sbjct: 301 G-FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 359

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M + + + P+  T  S++ A S  G L  G ++HA   K     +  +   L+++Y 
Sbjct: 360 FKRM-QLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYA 418

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KC  I+ A++ F +    + V WN ++  +G+      +   FRQM  E + P+  T+ S
Sbjct: 419 KCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 478

Query: 440 LLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFI 493
           +L  C   G +  G++ +  +++  F     L  Y C  ++D++ + G L  A + +
Sbjct: 479 ILKTCIRLGDLELGEQIHSQIIKTSF----QLNAYVCSVLIDMYAKLGKLDTAWDIL 531


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/756 (37%), Positives = 419/756 (55%), Gaps = 99/756 (13%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-------------- 92
           GK IH  ++K G    VF+  +L++ Y + G    A ++FD+MPV+              
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 93  -----------------DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
                            DS SW AMI GY Q G    A+ +  EM  + V     T+ ++
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD------- 188
           L  CA  + +  G  +H ++VKHGL   + V+N+L+NMYAK G    A  VFD       
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 189 ------------------------QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQ 223
                                   QM+ERDVVSWN++I+ Y Q      A   F+ M   
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW---------------------- 261
           +  +PD  TL S  S  A L + +  + +H  I+R  +                      
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 262 ---FME-------DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
               +E       DVI   A++D Y KLG IN A  +F+ L V+DV++W  +I GY QNG
Sbjct: 332 AQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391

Query: 312 LASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
              +A+E+F+ M++E  +  PN  T  ++L   S + +L  G +IHA   ++     V V
Sbjct: 392 FNQDAMELFRSMIKEGPK--PNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSV 449

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +  L+ MY K G I+DA  +F  +  +  ++ W ++I     HG G++AL  F +ML+ G
Sbjct: 450 SNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENG 509

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PDHIT+V +L+AC+H GLV +G+ Y+++MQ    I P   HY CM+DLFGRAG L  A
Sbjct: 510 IKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEA 569

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
           H FI+NMP+ PD   WG+LL +C++H N+EL  VA++RL  ++ EN G Y  ++N+Y+  
Sbjct: 570 HAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSAC 629

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+WE    +R   +D+G+KK  G+S +++ NKV IF   +  HP+ + IY+ +  +  ++
Sbjct: 630 GQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEI 689

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           K +G+VPD   VL D+EE+ KE IL+ HSE+LAIAFG+I +P  + ++I KNLRVC DCH
Sbjct: 690 KKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCH 749

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  KFIS++  REIIVRD+ RFHHFK+G+CSC DYW
Sbjct: 750 SAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 211/513 (41%), Gaps = 101/513 (19%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           DP T  S L    +  +  +G  IH  I+K GL   +F+ NNL+N YAK G +  A RVF
Sbjct: 14  DPYT--SFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVF 71

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAH-------------------------------G 216
           D+M  + V SWN I++ Y +      AH                               G
Sbjct: 72  DEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIG 131

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M    + P   TL ++ +  A +      R VH F+++ G     + + N++++MY
Sbjct: 132 MFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHG-LSSYISVANSLLNMY 190

Query: 277 AK-------------------------------LGIINSACAVFEGLPVKDVISWNTLIT 305
           AK                                G+++ A   FE +  +DV+SWN +I+
Sbjct: 191 AKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMIS 250

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK---- 361
           GY Q+G   EA+++F  M   +   P++ T  S L A +++  L+ G +IHA +I+    
Sbjct: 251 GYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFD 310

Query: 362 ------NCLC-----------------------FDVFVATCLVDMYGKCGRIDDAMSLFY 392
                 N L                         DV   T L+D Y K G I+ A  +F 
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD 370

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +     V W A+I  +  +G    A+  FR M+ EG +P++ T  ++L+  S    +  
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDH 430

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G R  H      G    +     ++ ++ ++G +  A      +  + D   W +++ A 
Sbjct: 431 G-RQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIAL 489

Query: 513 RIHGNMELGAVASDRLFE--VDSENVGYYVLMS 543
             HG  E      +R+ E  +  +++ Y  ++S
Sbjct: 490 AQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 178/396 (44%), Gaps = 46/396 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G   EA+D F +  + S  +PD +T    L AC NL +   GK+IH  +++ 
Sbjct: 248 MISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRT 307

Query: 58  GFE---------------------------------WDVFVAASLLHMYCRFGLANVARK 84
            F+                                  DV    +LL  Y + G  N AR+
Sbjct: 308 EFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARR 367

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FD + VRD  +W AMI GY Q+G   +A+++   M  EG   +  T+A++L V +   +
Sbjct: 368 IFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLAS 427

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIA 203
           +  G  IH    + G   ++ VSN LI MYAK G +  A  VF+ +  +RD ++W S+I 
Sbjct: 428 LDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMII 487

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   F  M + GI+PD +T V + S    +      RS +  +      +
Sbjct: 488 ALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKII 547

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
                   ++D++ + G++  A A  E +P++ DVI+W +L+     +    LA  A E 
Sbjct: 548 PTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAER 607

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
             ++E       N G Y ++   YS  G       I
Sbjct: 608 LLLIEP-----ENSGAYSALANVYSACGQWENAANI 638


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/659 (40%), Positives = 395/659 (59%), Gaps = 37/659 (5%)

Query: 48  KKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           KK+H  VL   +  W+  V   L+ +Y   G   +AR +FD++  ++   +N MI  Y  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +    +AL +   M  +G   D  T   +L   +RSD++  GL IH  ++K GL+ NL+V
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N LI MY K   ++ A +V D++  RDVVSWNS+++ Y Q+     A      M+   +
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P+  T+ SL   V       N+ S            ++V        +Y K        
Sbjct: 218 KPNDCTMASLLPAVT------NTTS------------DNV--------LYVK-------- 243

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F  L  K VISWN +I  Y  N +  EA+ ++  ME  N + P+  + VS+LPAY  +
Sbjct: 244 EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQME-ANGVEPDVVSIVSVLPAYGDL 302

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            AL  G ++H    +  L  ++ +   L+DMY KCG + DA ++F Q+     V W +II
Sbjct: 303 SALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSII 362

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S +G  GQG  A+  F +M + G+ PD I FVS+L ACSH+GL+ +G+ YF++M E  GI
Sbjct: 363 SAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAE-CGI 421

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P L+H+ C+VDL GRAG +  A+ FI+ MP+ PD  +WG LL ACR++ NM +G +A+D
Sbjct: 422 TPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAAD 481

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           +L  ++ E+ GYYVL+SNIYA  G+W  V  +RS+   +G+KK PG S++E+N+ V  F 
Sbjct: 482 KLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFL 541

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+ +KIY+EL  L  KMK LGY+P+    L DVEE++KE+ L  HSE+LA+AF 
Sbjct: 542 AGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFA 601

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           II++ P +PI++ KNLRVCGDCH   K IS+I EREII+RD++RFHHF++G CSCGDYW
Sbjct: 602 IINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 227/449 (50%), Gaps = 48/449 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV      +A+   Y+   T G  PD YT+P VLKA     +L  G +IH +VLK+
Sbjct: 91  MIRSYVNNHLYKDAL-LVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKI 149

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +++V   L+ MY +      A+++ D++P RD  SWN+M+S Y Q+G   +AL++ 
Sbjct: 150 GLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELC 209

Query: 118 DEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            EM    +  +  T+AS+LP      SDN+L                           Y 
Sbjct: 210 REMEALNLKPNDCTMASLLPAVTNTTSDNVL---------------------------YV 242

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K         +F ++ ++ V+SWN +IA Y  ++ P  A   ++ M+  G++PD++++VS
Sbjct: 243 K--------EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVS 294

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +      L+     R VH F  R+   + ++++ NA++DMYAK G +  A AVF  +  +
Sbjct: 295 VLPAYGDLSALSLGRRVHKFAERKK-LLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR 353

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV+SW ++I+ Y + G   +A+ VF  M     +NP+   +VS+L A SH G L  G + 
Sbjct: 354 DVVSWTSIISAYGKCGQGRDAVAVFAEMRNSG-LNPDSIAFVSVLAACSHAGLLDDG-RY 411

Query: 356 HARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           +  ++  C +   +    C+VD+ G+ G+ID+A     Q+P       W  ++S   ++ 
Sbjct: 412 YFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYS 471

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLT 442
             +  +    ++L   + P+H  +  LL+
Sbjct: 472 NMNIGILAADKLL--MLNPEHSGYYVLLS 498



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           +F T +Q     DL        I+ Q  D    + +HG ++   +   +  +G  ++ +Y
Sbjct: 10  YFATARQLSFTEDLCN-----RILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVY 64

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           A  G    A  +F+ +  K+V+ +N +I  Y  N L  +A+ V++ M     + P+  TY
Sbjct: 65  AACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFV-PDMYTY 123

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
             +L A S   +L  G++IH  V+K  L  +++V   L+ MYGKC  + +A  +  ++P 
Sbjct: 124 PCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPC 183

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
              V WN+++S +  +G+ + AL   R+M    ++P+  T  SLL A +++
Sbjct: 184 RDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNT 234


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 401/708 (56%), Gaps = 34/708 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS   + G ++ A+  F +  L    +PD  T   +L AC +   L +GK+ H   +K 
Sbjct: 323 LISGLAQQGYINRALALFKKMNLDCQ-KPDCVTVASLLSACASVGALPNGKQFHSYAIKA 381

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+ V  SLL +Y +      A + F                 Y Q  N  ++  I 
Sbjct: 382 GMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIF 426

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M++EG+  +  T  SIL  C        G  IH  ++K G +FN++VS+ LI+MYAK 
Sbjct: 427 TQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKH 486

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + HAL++F ++ E DVVSW ++IA Y Q +    A   F  MQ  GI+ D +   S  
Sbjct: 487 GKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAI 546

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +      R +H      G + +D+ IGNA+V +YA+ G +  A A F+ +  KD 
Sbjct: 547 SACAGIQALDQGRQIHAQSCLSG-YSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN 605

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN+L++G+AQ+G   EA+ +F  M +   +  N  T+ S + A +++  +R G +IH 
Sbjct: 606 VSWNSLVSGFAQSGYFEEALNIFAQMNKAG-LEINSFTFGSAVSAAANIANVRIGKQIHG 664

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + K     +  V+  L+ +Y KCG IDD             + WN++I+ +  HG G +
Sbjct: 665 MIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFE 711

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M    V P+H+TFV +L+ACSH GLV EG  YF  M E   + P  +HY C+V
Sbjct: 712 ALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVV 771

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G L  A  F++ MP++PDA +W  LL AC +H N+++G  A+  L E++ ++  
Sbjct: 772 DLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSA 831

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA  GKW+  D  R + +DRG+KK PG S +EV+N V  F+ G++ HP+ + 
Sbjct: 832 TYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADM 891

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ LR L  +    GYVP  + +L D E  +K+     HSERLAIAFG++S    +P+ 
Sbjct: 892 IYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLY 951

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +FKNLRVC DCHNW K +S+IT+R IIVRDS RFHHFK G CSC DYW
Sbjct: 952 VFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 161/587 (27%), Positives = 276/587 (47%), Gaps = 51/587 (8%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR-NLVDGK---KIHCSVLKLGFEWDVFV 65
           RL   V   ++  LT  +  D   F  VL+ C  N V  +   +IH   +  GFE   F+
Sbjct: 142 RLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFI 201

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+ +Y + G  + A+K+F+++  RDS SW AMISG  Q+G   EA+ +  ++     
Sbjct: 202 CNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI----- 256

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                    +L  C + +    G  +H  ++K G     +V N L+ +Y++ G +  A +
Sbjct: 257 ---------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQ 307

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F  M +RD VS+NS+I+   Q      A   F  M     +PD +T+ SL S  A +  
Sbjct: 308 IFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGA 367

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             N +  H + ++ G    D+++  +++D+Y K   I +A   F                
Sbjct: 368 LPNGKQFHSYAIKAG-MTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------L 411

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y Q    +++ ++F  M +   I PNQ TY SIL   + +GA   G +IH +V+K    
Sbjct: 412 CYGQLDNLNKSFQIFTQM-QIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ 470

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           F+V+V++ L+DMY K G++D A+ +F ++  +  V W A+I+ +  H +  +ALN F++M
Sbjct: 471 FNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEM 530

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            D+G++ D+I F S ++AC+    + +G R  H      G    L     +V L+ R G 
Sbjct: 531 QDQGIKSDNIGFASAISACAGIQALDQG-RQIHAQSCLSGYSDDLSIGNALVSLYARCGK 589

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNME----LGAVASDRLFEVDSENVGYYVL 541
           +  A+     +  + + S W +L+      G  E    + A  +    E++S   G  V 
Sbjct: 590 VREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVS 648

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGW-SSIEVNNKVDIFYT 587
            +   AN         VR   +  G+ +  G+ S  EV+N +   Y 
Sbjct: 649 AAANIAN---------VRIGKQIHGMIRKTGYDSETEVSNALITLYA 686



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 239/484 (49%), Gaps = 30/484 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS   + G   EA+  F Q  L++  + +F+ F            GK++H  VLK GF 
Sbjct: 236 MISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEF------------GKQLHGLVLKQGFS 283

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            + +V  +L+ +Y R G  + A ++F  M  RD  S+N++ISG  Q G    AL +  +M
Sbjct: 284 SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKM 343

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            L+    D +TVAS+L  CA    + +G   H Y +K G+  ++ V  +L+++Y K    
Sbjct: 344 NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCS-- 401

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
                        D+ + +     Y Q ++   +   FT MQ  GI P+  T  S+    
Sbjct: 402 -------------DIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             L        +H  +++ G F  +V + + ++DMYAK G ++ A  +F  L   DV+SW
Sbjct: 449 TTLGATDLGEQIHTQVLKTG-FQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSW 507

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I GY Q+   +EA+ +F+ M++    + N G + S + A + + AL QG +IHA+  
Sbjct: 508 TAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG-FASAISACAGIQALDQGRQIHAQSC 566

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            +    D+ +   LV +Y +CG++ +A + F Q+    +V WN+++S     G  ++ALN
Sbjct: 567 LSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALN 626

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F QM   G+  +  TF S ++A ++   V  G++  H M  + G     +    ++ L+
Sbjct: 627 IFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLY 685

Query: 481 GRAG 484
            + G
Sbjct: 686 AKCG 689



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 221/497 (44%), Gaps = 62/497 (12%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+R +  TF  +L+ C   R+  DG K                   L+  Y  FG  N A
Sbjct: 76  GVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYLAFGDLNCA 116

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +FD+MP+R    WN + + +           +   M  + V  D    A +L  C  S
Sbjct: 117 VNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGC--S 174

Query: 143 DNILSGLL---IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            N +S      IH   +  G E + F+ N LI++Y K G +  A +VF+ +  RD VSW 
Sbjct: 175 GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWV 234

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+   Q+     A   F  +              + S   ++      + +HG ++++
Sbjct: 235 AMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQ 280

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  +  + NA+V +Y++ G ++SA  +F  +  +D +S+N+LI+G AQ G  + A+ +
Sbjct: 281 G-FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALAL 339

Query: 320 FQMME-ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           F+ M  +C +  P+  T  S+L A + VGAL  G + H+  IK  +  D+ V   L+D+Y
Sbjct: 340 FKKMNLDCQK--PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLY 397

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KC  I  A   F                C+G     +K+   F QM  EG+ P+  T+ 
Sbjct: 398 VKCSDIKTAHEFFL---------------CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYP 442

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S+L  C+  G    G++  H    + G + ++     ++D++ + G L  A    + +  
Sbjct: 443 SILKTCTTLGATDLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK- 500

Query: 499 RPDASIWGALLGACRIH 515
             D   W A++     H
Sbjct: 501 ENDVVSWTAMIAGYTQH 517



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 51/331 (15%)

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
           G+   M+Q G++ +  T + L      L  C NSRS +               G  ++D 
Sbjct: 67  GYLHLMEQHGVRANSQTFLWL------LEGCLNSRSFYD--------------GLKLIDF 106

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y   G +N A  VF+ +P++ +  WN +   +    L      +F+ M   N +  ++  
Sbjct: 107 YLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKN-VEFDERI 165

Query: 336 YVSILPAYS-HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +  +L   S +  + R   +IHA+ I +      F+   L+D+Y K G +  A  +F  +
Sbjct: 166 FAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENL 225

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQM---------------------LDEGVRPD 433
               SV W A+IS    +G  ++A+  F Q+                     L +G   +
Sbjct: 226 KARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSE 285

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
                +L+T  S SG +S  ++ FH M +   +      Y  ++    + G++  A    
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRALALF 340

Query: 494 QNMPV---RPDASIWGALLGACRIHGNMELG 521
           + M +   +PD     +LL AC   G +  G
Sbjct: 341 KKMNLDCQKPDCVTVASLLSACASVGALPNG 371


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/644 (41%), Positives = 375/644 (58%), Gaps = 35/644 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D  +A  L+  Y   G  +VAR +FD    ++   +N MI  Y  +   VEAL I   M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
               + D  T   +L  C+  DN+  GL +H  IVK GL+ NLF+ N L+ MY K G +R
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A +V DQM  RDVVSWNS++A Y QS     A      M    +  D  T+ SL+ +V 
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
                 N + +H                                  +FE +  K++ISWN
Sbjct: 250 -YTSLENVQYIHN---------------------------------MFERMTKKNLISWN 275

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I  Y  N + +EA+ +F  MEEC  + P+  T  S+LPA   + AL  G ++H  + K
Sbjct: 276 VMIAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLSALFLGRRLHKYIEK 334

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
             L  ++ +   L+DMY KCG +++A  +F ++     V W +++S +G  GQG  A+  
Sbjct: 335 GNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVAL 394

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F +MLD G  PD I FVS+L+ACSH+GL+ +G+ YF MM E++GI P ++H+ CMVDLFG
Sbjct: 395 FAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFG 454

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG +  A++FI+ MP+ P+  +WGALL ACR+H  M++G VA+D LF++  +  GYYVL
Sbjct: 455 RAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVL 514

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA  G W+ V  VR   +  G+KK PG S++E+N +V  F  G++ HP+ + IY E
Sbjct: 515 LSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGE 574

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  KMK LGY+P     L DVE ++KE  L  HSE+LAI F I+++   +PI+I KN
Sbjct: 575 LDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKN 634

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCGDCH   K IS+I  R IIVRD NRFHHF +GICSCGDYW
Sbjct: 635 LRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 224/425 (52%), Gaps = 43/425 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV      EA+  F Q  L+    PD YTFP VLKAC    NL  G ++H +++K+
Sbjct: 108 MIRSYVNNNLYVEALSIF-QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV 166

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + ++F+  +L+ MY + G    ARK+ D MP RD  SWN+M++GY QSG   +AL+I 
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEIC 226

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    ++ D  T+AS+ PV                                   Y   
Sbjct: 227 KEMDSLNLNHDAGTMASLSPVVC---------------------------------YTSL 253

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +++   +F++M +++++SWN +IA Y  ++ P  A   F  M++ G++PD +T+ SL 
Sbjct: 254 ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L+     R +H +I  +G    ++++ NA++DMYAK G +  A  VF+ + ++DV
Sbjct: 314 PACGDLSALFLGRRLHKYI-EKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV 372

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++++ Y ++G   +A+ +F  M +  + NP+   +VS+L A SH G L QG + + 
Sbjct: 373 VSWTSMMSAYGRSGQGYDAVALFAKMLDSGQ-NPDSIAFVSVLSACSHTGLLDQG-RHYF 430

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
           R++         +    C+VD++G+ G +++A S   Q+P   +   W A++S   +H +
Sbjct: 431 RMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490

Query: 415 GDKAL 419
            D  L
Sbjct: 491 MDIGL 495



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 172/357 (48%), Gaps = 37/357 (10%)

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           ++   L  +  ++  L+  Y+  G    A  +FD+ +E++VV +N +I +Y  +N  + A
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M      PD  T   +    + L++ R    VH  I++ G    ++ IGNA+V 
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG-LDTNLFIGNALVA 180

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY K G +  A  V + +P +DV+SWN+++ GYAQ+G   +A+E+ + M+  N +N + G
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLN-LNHDAG 239

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T  S+ P   +  +L     IH                                ++F ++
Sbjct: 240 TMASLSPVVCYT-SLENVQYIH--------------------------------NMFERM 266

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            + + + WN +I+ +  +   ++A++ F QM + G++PD +T  SLL AC     +  G+
Sbjct: 267 TKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGR 326

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           R  H   E+  ++P+L     ++D++ + G L  A +    M +R D   W +++ A
Sbjct: 327 R-LHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 29/351 (8%)

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
           I+ Q    +    +H  I+       D  +   ++  Y+  G  + A  +F+    K+V+
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVV 103

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            +N +I  Y  N L  EA+ +FQ+M  C   NP+  T+  +L A S +  LR G+++H  
Sbjct: 104 FFNVMIRSYVNNNLYVEALSIFQVMLSC-AFNPDHYTFPCVLKACSGLDNLRVGLQVHDA 162

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           ++K  L  ++F+   LV MYGKCG + +A  +  Q+P    V WN++++ +   GQ D A
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L   ++M    +  D  T  SL     ++ L  E  +Y H M E    K +L  +  M+ 
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERM-TKKNLISWNVMIA 279

Query: 479 LFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGAC----------RIHGNMELGAVAS 525
           ++        A +    M    ++PDA    +LL AC          R+H  +E G +  
Sbjct: 280 IYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQP 339

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           + L E           + ++YA  G  E   E R +     L+    W+S+
Sbjct: 340 NLLLE---------NALLDMYAKCGCLE---EARDVFDKMRLRDVVSWTSM 378


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/784 (36%), Positives = 424/784 (54%), Gaps = 108/784 (13%)

Query: 29  PDFYTFPPVLKACRNLVD-----------GKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           P   +   +L+ C NL+             + +HC V+K G  + V++  +L+++Y + G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 78  LANVARKLFDDMPVR-------------------------------DSGSWNAMISGYCQ 106
            A  ARKLFD+MP+R                               DS SW  MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            G   +A+ ++ +M  EG+     T+ ++L   A +  + +G  +H +IVK GL  N+ V
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 167 SNNLINMYAK-------------------------------FGMMRHALRVFDQMMERDV 195
           SN+L+NMYAK                                G M  A+  F+QM ERD+
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           V+WNS+I+ + Q    + A   F+ M + + + PD  TL S+ S  A L      + +H 
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 255 FIMRRGWFMEDVIIG--------------------------------NAVVDMYAKLGII 282
            I+  G+ +  +++                                  A++D Y KLG +
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           N A  +F  L  +DV++W  +I GY Q+G   EAI +F+ M    +  PN  T  ++L  
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSV 422

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
            S + +L  G +IH   +K+   + V V+  L+ MY K G I  A   F  +     +V 
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W ++I     HG  ++AL  F  ML EG+RPDHIT+V + +AC+H+GLV++G++YF MM+
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +   I P L HY CMVDLFGRAG L  A  FI+ MP+ PD   WG+LL ACR+H N++LG
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
            VA++RL  ++ EN G Y  ++N+Y+  GKWE   ++R   +D  +KK  G+S IEV +K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V +F   + THP+  +IY  ++ +  ++K +GYVPD + VL D+EE+ KE IL  HSE+L
Sbjct: 663 VHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKL 722

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           AIAFG+IS+P K+ ++I KNLRVC DCH   KFIS++  REIIVRD+ RFHHFKDG CSC
Sbjct: 723 AIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSC 782

Query: 702 GDYW 705
            DYW
Sbjct: 783 RDYW 786



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 175/396 (44%), Gaps = 46/396 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS + + G    A+D F +    S L PD +T   VL AC NL     GK+IH  ++  
Sbjct: 249 MISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFD-----DMPV--------------------- 91
           GF+    V  +L+ MY R G    AR+L +     D+ +                     
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKN 368

Query: 92  -------RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
                  RD  +W AMI GY Q G+  EA+++   M   G   +  T+A++L V +   +
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIA 203
           +  G  IH   VK G  +++ VSN LI MYAK G +  A R FD +  ERD VSW S+I 
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMII 488

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   F TM   G++PD +T V + S           R     +      +
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKII 548

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
             +     +VD++ + G++  A    E +P++ DV++W +L++    +    L   A E 
Sbjct: 549 PTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAER 608

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
             ++E       N G Y ++   YS  G   +  KI
Sbjct: 609 LLLLEP-----ENSGAYSALANLYSACGKWEEAAKI 639


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 420/712 (58%), Gaps = 15/712 (2%)

Query: 2    ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK--ACRNLVD-GKKIHCSVLKLG 58
            +S +++ G   EAVDCF    + S +  D  TF  +L   A  N ++ GK+IH  V++ G
Sbjct: 878  LSWFLQRGETWEAVDCFVDM-INSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSG 936

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             +  V V   L++MY + G  + AR +F  M   D  SWN MISG   SG    ++ +  
Sbjct: 937  LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFV 996

Query: 119  EMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLINM 173
            ++   G+  D  TVAS+L  C+     L G       IH   +K G+  + FVS  LI++
Sbjct: 997  DLLRGGLLPDQFTVASVLRACSS----LGGGCHLATQIHACAMKAGVVLDSFVSTTLIDV 1052

Query: 174  YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
            Y+K G M  A  +F      D+ SWN+++  Y  S D   A   +  MQ++G + + +TL
Sbjct: 1053 YSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITL 1112

Query: 234  VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
             +       L   +  + +   +++RG F  D+ + + V+DMY K G + SA  +F  +P
Sbjct: 1113 ANAAKAAGGLVGLKQGKQIQAVVVKRG-FNLDLFVISGVLDMYLKCGEMESARRIFNEIP 1171

Query: 294  VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
              D ++W T+I+G  +NG    A+  +  M   +++ P++ T+ +++ A S + AL QG 
Sbjct: 1172 SPDDVAWTTMISGCVENGQEEHALFTYHHMR-LSKVQPDEYTFATLVKACSLLTALEQGR 1230

Query: 354  KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +IHA  +K    FD FV T LVDMY KCG I+DA  LF +   S    WNA+I     HG
Sbjct: 1231 QIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHG 1290

Query: 414  QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              ++AL FF +M   GV PD +TF+ +L+ACSHSGLVSE    F+ MQ+ +GI+P ++HY
Sbjct: 1291 NAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHY 1350

Query: 474  GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             C+VD   RAG +  A   I +MP    AS++  LL ACR+  + E G   +++L  ++ 
Sbjct: 1351 SCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEP 1410

Query: 534  ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
             +   YVL+SN+YA   +WE V   R++ R   +KK PG+S +++ NKV +F  G+R+H 
Sbjct: 1411 SDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHE 1470

Query: 594  KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
            + + IY+++  +  +++  GY+PD  F L DVEE++KE  L  HSE+LAIA+G++ +PP 
Sbjct: 1471 ETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPS 1530

Query: 654  SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + +++ KNLRVCGDCHN  K+IS++ ERE+++RD+NRFHHF+ G+CSCGDYW
Sbjct: 1531 TTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 241/517 (46%), Gaps = 41/517 (7%)

Query: 13   EAVDCFYQFTLTSGLRPDF-----YTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
            +A D F+ F L   LR  F     +T  PV K C    +    + +H   +K+G +WDVF
Sbjct: 707  KARDGFHLFRL---LRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVF 763

Query: 65   VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
            VA +L+++Y +FG    AR LFD M +RD   WN M+  Y  +G   EAL +  E    G
Sbjct: 764  VAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTG 823

Query: 125  VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
            +  D +T+ ++  V     N+L   L  L    +G +  ++                   
Sbjct: 824  LRPDDVTLCTLARVVKSKQNVLEWQLKQLK--AYGTKLFMYDD----------------- 864

Query: 185  RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
                     DV++WN  ++ + Q  +   A   F  M  + +  D LT V + S+VA LN
Sbjct: 865  ----DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLN 920

Query: 245  DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                 + +HG ++R G   + V +GN +++MY K G ++ A  VF  +   D++SWNT+I
Sbjct: 921  CLELGKQIHGIVVRSG-LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMI 979

Query: 305  TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNC 363
            +G A +GL   ++ +F  +     + P+Q T  S+L A S + G      +IHA  +K  
Sbjct: 980  SGCALSGLEECSVGMFVDLLRGGLL-PDQFTVASVLRACSSLGGGCHLATQIHACAMKAG 1038

Query: 364  LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
            +  D FV+T L+D+Y K G++++A  LF          WNA++  + + G   KAL  + 
Sbjct: 1039 VVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYI 1098

Query: 424  QMLDEGVRPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
             M + G R + IT  +   A    GLV   Q +    +  + G    L     ++D++ +
Sbjct: 1099 LMQESGERANQITLANAAKAA--GGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLK 1156

Query: 483  AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             G +  A      +P  PD   W  ++  C  +G  E
Sbjct: 1157 CGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEE 1192



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 249/527 (47%), Gaps = 40/527 (7%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPD---FYTFPPVLKACRNLVDGKKIHCSVLKL 57
            M+  YV  G   EA+  F +F  T GLRPD     T   V+K+ +N++            
Sbjct: 799  MMKAYVDTGLEYEALLLFSEFNRT-GLRPDDVTLCTLARVVKSKQNVL------------ 845

Query: 58   GFEWDVF---VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
              EW +       + L MY      +            D  +WN  +S + Q G   EA+
Sbjct: 846  --EWQLKQLKAYGTKLFMYDDDDDGS------------DVIAWNKTLSWFLQRGETWEAV 891

Query: 115  DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            D   +M    V+ D +T   +L V A  + +  G  IH  +V+ GL+  + V N LINMY
Sbjct: 892  DCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMY 951

Query: 175  AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
             K G +  A  VF QM E D+VSWN++I+    S     + G F  + + G+ PD  T+ 
Sbjct: 952  VKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVA 1011

Query: 235  SLTSIVAQL-NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+    + L   C  +  +H   M+ G  + D  +   ++D+Y+K G +  A  +F    
Sbjct: 1012 SVLRACSSLGGGCHLATQIHACAMKAGVVL-DSFVSTTLIDVYSKSGKMEEAEFLFVNQD 1070

Query: 294  VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
              D+ SWN ++ GY  +G   +A+ ++ +M+E  E   NQ T  +   A   +  L+QG 
Sbjct: 1071 GFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE-RANQITLANAAKAAGGLVGLKQGK 1129

Query: 354  KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +I A V+K     D+FV + ++DMY KCG ++ A  +F ++P    V W  +IS    +G
Sbjct: 1130 QIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENG 1189

Query: 414  QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKH 472
            Q + AL  +  M    V+PD  TF +L+ ACS    + +G++ + + ++      P +  
Sbjct: 1190 QEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV-- 1247

Query: 473  YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
               +VD++ + G++  A    +       AS W A++     HGN E
Sbjct: 1248 MTSLVDMYAKCGNIEDARGLFKRTNTSRIAS-WNAMIVGLAQHGNAE 1293



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 229/491 (46%), Gaps = 30/491 (6%)

Query: 29   PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
            P +++      A  +L  GK+ H  +L  G   D F+  +L+ MY + G  + ARKLFD 
Sbjct: 627  PQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDT 686

Query: 89   MP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             P   RD  +WNA++S +     A +   +   +R   VS    T+A +  +C  S +  
Sbjct: 687  TPDTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPS 744

Query: 147  SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            +   +H Y VK GL++++FV+  L+N+YAKFG +R A  +FD M  RDVV WN ++ AY 
Sbjct: 745  AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 207  QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
             +     A   F+   + G++PD +TL +L  +V    +               W ++ +
Sbjct: 805  DTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLE------------WQLKQL 852

Query: 267  IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                  + MY      +            DVI+WN  ++ + Q G   EA++ F  M   
Sbjct: 853  KAYGTKLFMYDDDDDGS------------DVIAWNKTLSWFLQRGETWEAVDCFVDMIN- 899

Query: 327  NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
            + +  +  T+V +L   + +  L  G +IH  V+++ L   V V  CL++MY K G +  
Sbjct: 900  SRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSR 959

Query: 387  AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
            A ++F+Q+     V WN +IS   + G  + ++  F  +L  G+ PD  T  S+L ACS 
Sbjct: 960  ARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSS 1019

Query: 447  SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
             G         H    + G+         ++D++ ++G +  A     N     D + W 
Sbjct: 1020 LGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQD-GFDLASWN 1078

Query: 507  ALLGACRIHGN 517
            A++    + G+
Sbjct: 1079 AMMHGYIVSGD 1089


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/683 (40%), Positives = 400/683 (58%), Gaps = 45/683 (6%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDV-FVAASLLHMYCRFGLANVARKLFDD---- 88
           +  +L+ C +L   K IH S+   GF        A L+ +Y + G  + AR LFD     
Sbjct: 28  YDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 89  ----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
                   +S   N M+  Y  +G + EA+D+   M+  GV ++  T   +L VCA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
            + G ++H  +V+ G   +LFV   L++MYAK G +  A  VFD+M+ RDVV W ++I  
Sbjct: 148 AVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITL 207

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           YEQ+  P+ A   F  MQ+ G   D +T +S+ S V QL D R +               
Sbjct: 208 YEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA--------------- 252

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
                            I+ A  VF+ +  ++ ISWN++++GY QNG  ++A+ +F  M+
Sbjct: 253 -----------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQ 295

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             +E +PN  T + ++ A S++G+   G K+H  VI + +  D  +   ++DMY KCG +
Sbjct: 296 -ASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 354

Query: 385 DDAMSLFY--QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           D A+ +F   ++       WN +IS +G+HG G +AL  F +M  EGV P+ ITF S+L+
Sbjct: 355 DTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 414

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSH+GL+ EG++ F  M +   ++P +KHY CMVD+ GRAG L  A   I+ +P RP  
Sbjct: 415 ACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSD 473

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
            +WGALL ACRIHGN ELG +A++ LF+++ E+ GYYVLMSNIYA   KW+ V+ VR   
Sbjct: 474 EVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNM 533

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           + RGLKK   +S IE   +V  F+T +++ P Y ++Y ++ +L  +MK +GYVPD S VL
Sbjct: 534 KSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVL 593

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DVE ++KEH+L  HSE+LA+AFGI+      PIQ+ KNLRVC DCH   KFIS I  R+
Sbjct: 594 HDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRK 653

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           IIVRD NRFHHF+ G CSCGDYW
Sbjct: 654 IIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 223/451 (49%), Gaps = 48/451 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  Y   GR  EA+D  Y +    G+  + +T+P VLK C +    V G+ +H  V++ 
Sbjct: 103 MLRAYANAGRSYEAID-LYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRT 161

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+FV A+L+ MY + G    A ++FD M +RD   W AMI+ Y Q+   ++AL + 
Sbjct: 162 GFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLF 221

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG   D IT  S+     +  +                               + 
Sbjct: 222 RKMQEEGFLGDEITAISVASAVGQLGD------------------------------GRM 251

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            + R  L VFD+M ER+ +SWNS+++ Y Q+  P  A   F  MQ +   P+ +T + + 
Sbjct: 252 AISRARL-VFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMV 310

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG--LPVK 295
           S  + L      R +H F++     + D  + NA++DMY K G +++A  +F    L  +
Sbjct: 311 SACSYLGSKHLGRKLHNFVISSKMDI-DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 369

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV SWN LI+GY  +G   EA+E+F  M +   + PN  T+ SIL A SH G + +G K 
Sbjct: 370 DVSSWNVLISGYGVHGHGKEALELFSRM-QVEGVEPNDITFTSILSACSHAGLIDEGRKC 428

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            A + K  +  ++    C+VDM G+ G +++A  L  ++P R S   W A++    IHG 
Sbjct: 429 FADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 488

Query: 415 ---GDKALNFFRQMLDEGVRPDHITFVSLLT 442
              G+ A N   Q+      P+H  +  L++
Sbjct: 489 TELGEIAANNLFQL-----EPEHTGYYVLMS 514


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/658 (41%), Positives = 379/658 (57%), Gaps = 36/658 (5%)

Query: 49  KIHCS-VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K+H   V+      D  +A  L+  Y   G  +VAR +FD    ++   +N MI  Y  +
Sbjct: 56  KLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN 115

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
              VEAL I   M     + D  T   +L  C+  DN+  GL +H  IVK GL+ NLF+ 
Sbjct: 116 NLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIG 175

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L+ MY K G +R A +V DQM  RDVVSWNS++A Y QS     A      M    + 
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D  T+ SL+ +V                                   Y  L  +     
Sbjct: 236 HDAGTMASLSPVVC----------------------------------YTSLENVQYIHN 261

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +FE +  K++ISWN +I  Y  N + +EA+ +F  MEEC  + P+  T  S+LPA   + 
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLS 320

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G ++H  + K  L  ++ +   L+DMY KCG +++A  +F ++     V W +++S
Sbjct: 321 ALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMS 380

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G  GQG  A+  F +MLD G  PD I FVS+L+ACSH+GL+ +G+ YF MM E++GI 
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIV 440

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++H+ CMVDLFGRAG +  A++FI+ MP+ P+  +WGALL ACR+H  M++G VA+D 
Sbjct: 441 PRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADL 500

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF++  +  GYYVL+SNIYA  G W+ V  VR   +  G+KK PG S++E+N +V  F  
Sbjct: 501 LFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLA 560

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G++ HP+ + IY EL  L  KMK LGY+P     L DVE ++KE  L  HSE+LAI F I
Sbjct: 561 GDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAI 620

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +++   +PI+I KNLRVCGDCH   K IS+I  R IIVRD NRFHHF +GICSCGDYW
Sbjct: 621 LNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 224/425 (52%), Gaps = 43/425 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV      EA+  F Q  L+    PD YTFP VLKAC    NL  G ++H +++K+
Sbjct: 108 MIRSYVNNNLYVEALSIF-QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV 166

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + ++F+  +L+ MY + G    ARK+ D MP RD  SWN+M++GY QSG   +AL+I 
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEIC 226

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    ++ D  T+AS+ PV                                   Y   
Sbjct: 227 KEMDSLNLNHDAGTMASLSPVVC---------------------------------YTSL 253

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +++   +F++M +++++SWN +IA Y  ++ P  A   F  M++ G++PD +T+ SL 
Sbjct: 254 ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L+     R +H +I  +G    ++++ NA++DMYAK G +  A  VF+ + ++DV
Sbjct: 314 PACGDLSALFLGRRLHKYI-EKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDV 372

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++++ Y ++G   +A+ +F  M +  + NP+   +VS+L A SH G L QG + + 
Sbjct: 373 VSWTSMMSAYGRSGQGYDAVALFAKMLDSGQ-NPDSIAFVSVLSACSHTGLLDQG-RHYF 430

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
           R++         +    C+VD++G+ G +++A S   Q+P   +   W A++S   +H +
Sbjct: 431 RMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490

Query: 415 GDKAL 419
            D  L
Sbjct: 491 MDIGL 495



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 29/351 (8%)

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
           I+ Q    +    +H  I+       D  +   ++  Y+  G  + A  +F+    K+V+
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVV 103

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            +N +I  Y  N L  EA+ +FQ+M  C   NP+  T+  +L A S +  LR G+++H  
Sbjct: 104 FFNVMIRSYVNNNLYVEALSIFQVMLSC-AFNPDHYTFPCVLKACSGLDNLRVGLQVHDA 162

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           ++K  L  ++F+   LV MYGKCG + +A  +  Q+P    V WN++++ +   GQ D A
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L   ++M    +  D  T  SL     ++ L  E  +Y H M E    K +L  +  M+ 
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERM-TKKNLISWNVMIA 279

Query: 479 LFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGAC----------RIHGNMELGAVAS 525
           ++        A +    M    ++PDA    +LL AC          R+H  +E G +  
Sbjct: 280 IYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRP 339

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           + L E           + ++YA  G  E   E R +     L+    W+S+
Sbjct: 340 NLLLE---------NALLDMYAKCGCLE---EARDVFDKMRLRDVVSWTSM 378


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/643 (41%), Positives = 391/643 (60%), Gaps = 5/643 (0%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+    ++    FG  N A K F ++   D   WNA+I GY Q       + +  +M++ 
Sbjct: 20  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 79

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  +  T   +L  C  +     G  IH    K+G   N+FV N+L++MYAKFG + +A
Sbjct: 80  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 139

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             VFD++ +R VVSW SII+ Y Q+ DP+ A   F  M+Q  ++PD + LVS+ +    +
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 244 NDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
            D    +S+HG + + G  F  D++I  ++  MYAK G++  A   F  +   ++I WN 
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLILWNA 257

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I+GYA NG   EAI++F+ M   N I  +  T  S + A + VG+L     +   + K+
Sbjct: 258 MISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLELARWLDGYISKS 316

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
               D FV T L+DMY KCG I  A  +F +V     V W+ +I  +G+HG G +A+  +
Sbjct: 317 EYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLY 376

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +M   GV P+  TF+ LLTAC +SGLV EG   FH+M +  GI+PH +HY C+VDL GR
Sbjct: 377 NEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH-GIEPHHQHYSCVVDLLGR 435

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG+L  A++FI +MP++P  S+WGALL AC+IH  + LG +A+++LF +D  N G+YV +
Sbjct: 436 AGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQL 495

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SN+YA+   W  V  VR +   +GL K  G SSIE+N  ++ F  G+R+HPK ++I++EL
Sbjct: 496 SNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEEL 555

Query: 603 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
             L  ++K+ GYVP    VL D+  +E E  L  HSERLA+A+GIIS+ P + ++I KNL
Sbjct: 556 DRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNL 615

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R C +CH+  K IS++ +REII+RD+ RFHHFKDG+CSCGD+W
Sbjct: 616 RACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 208/392 (53%), Gaps = 6/392 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           S + P+ +TF  VLKAC        GK+IH    K GF  +VFV  SL+ MY +FG  + 
Sbjct: 79  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 138

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +FD +  R   SW ++ISGY Q+G+ +EAL++  EMR   V  D I + S++     
Sbjct: 139 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 198

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
            +++  G  IH  + K GLEF   +  +L  MYAK G++  A   F++M + +++ WN++
Sbjct: 199 VEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAM 258

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y  +     A   F  M    I+ D +T+ S     AQ+     +R + G+I  +  
Sbjct: 259 ISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI-SKSE 317

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           + +D  +   ++DMYAK G I  A  VF+ +  KDV+ W+ +I GY  +G   EAI ++ 
Sbjct: 318 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 377

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M++   + PN GT++ +L A  + G +++G ++   +  + +       +C+VD+ G+ 
Sbjct: 378 EMKQAG-VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRA 436

Query: 382 GRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
           G ++ A      +P    V  W A++S   IH
Sbjct: 437 GYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/643 (41%), Positives = 391/643 (60%), Gaps = 5/643 (0%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+    ++    FG  N A K F ++   D   WNA+I GY Q       + +  +M++ 
Sbjct: 35  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 94

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  +  T   +L  C  +     G  IH    K+G   N+FV N+L++MYAKFG + +A
Sbjct: 95  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 154

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             VFD++ +R VVSW SII+ Y Q+ DP+ A   F  M+Q  ++PD + LVS+ +    +
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 244 NDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
            D    +S+HG + + G  F  D++I  ++  MYAK G++  A   F  +   ++I WN 
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLILWNA 272

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I+GYA NG   EAI++F+ M   N I  +  T  S + A + VG+L     +   + K+
Sbjct: 273 MISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLELARWLDGYISKS 331

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
               D FV T L+DMY KCG I  A  +F +V     V W+ +I  +G+HG G +A+  +
Sbjct: 332 EYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLY 391

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +M   GV P+  TF+ LLTAC +SGLV EG   FH+M +  GI+PH +HY C+VDL GR
Sbjct: 392 NEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH-GIEPHHQHYSCVVDLLGR 450

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG+L  A++FI +MP++P  S+WGALL AC+IH  + LG +A+++LF +D  N G+YV +
Sbjct: 451 AGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQL 510

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SN+YA+   W  V  VR +   +GL K  G SSIE+N  ++ F  G+R+HPK ++I++EL
Sbjct: 511 SNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEEL 570

Query: 603 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
             L  ++K+ GYVP    VL D+  +E E  L  HSERLA+A+GIIS+ P + ++I KNL
Sbjct: 571 DRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNL 630

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R C +CH+  K IS++ +REII+RD+ RFHHFKDG+CSCGD+W
Sbjct: 631 RACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 208/392 (53%), Gaps = 6/392 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           S + P+ +TF  VLKAC        GK+IH    K GF  +VFV  SL+ MY +FG  + 
Sbjct: 94  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 153

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +FD +  R   SW ++ISGY Q+G+ +EAL++  EMR   V  D I + S++     
Sbjct: 154 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 213

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
            +++  G  IH  + K GLEF   +  +L  MYAK G++  A   F++M + +++ WN++
Sbjct: 214 VEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAM 273

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y  +     A   F  M    I+ D +T+ S     AQ+     +R + G+I  +  
Sbjct: 274 ISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYI-SKSE 332

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           + +D  +   ++DMYAK G I  A  VF+ +  KDV+ W+ +I GY  +G   EAI ++ 
Sbjct: 333 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 392

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M++   + PN GT++ +L A  + G +++G ++   +  + +       +C+VD+ G+ 
Sbjct: 393 EMKQAG-VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRA 451

Query: 382 GRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
           G ++ A      +P    V  W A++S   IH
Sbjct: 452 GYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 424/709 (59%), Gaps = 41/709 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV---ARKLFDDMPVRD 93
           +L++C++   G +IH   +  G    +F  + L+  +   G  +    +R LF  +   +
Sbjct: 15  LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN 74

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIH 152
              WN MI GY +S N  EA+ +   M  +G++  +  T   +L  CAR  ++  G  +H
Sbjct: 75  LFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
            +I+KHG E +LFV N LI++Y+ FG +  A  +FD+ + RD+VS+N++I  Y + N P 
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNA 271
           +A   F  MQ +GI PD  T V+L S+ + LN+    + +H  + +    ++ ++++ +A
Sbjct: 195 SALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSA 254

Query: 272 VVDMYAKLGIINSACAVFEGLPV--------------------------------KDVIS 299
           +VDMYAK G+IN A  VF  +                                  +DVIS
Sbjct: 255 IVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVIS 314

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  +I+GY+Q G  SEA+E+F+ ME    I P++ T V++L A + +GA   G +++ + 
Sbjct: 315 WTAMISGYSQAGQCSEALELFKEMEALG-IKPDEVTLVAVLSACARLGAFDLGKRLYHQY 373

Query: 360 IKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCHGIHGQGD 416
           I+N     +  +   ++DMY KCG ID A+ +F +V ++  +   +N++I+    HG G+
Sbjct: 374 IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGE 433

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  FR+++  G++PD +TFV +L AC HSGL+ EG++ F  M   +GIKP ++HYGCM
Sbjct: 434 TAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCM 493

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GR G L  A++ +Q MP   ++ IW ALL ACR HGN+++G +A  +L E+++++ 
Sbjct: 494 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHG 553

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SNI A+  +WE   +VR +  D G++K PGWS IE+   +  F   +++HP+ +
Sbjct: 554 ARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGK 613

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I   L+++  ++KS GYVP+ + V+ D++E+EKE +++ HSE+LA+AFG++   P   I
Sbjct: 614 EIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTI 673

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLR+C DCH   K +S+I  REI VRD+ RFHHF++G CSC D+W
Sbjct: 674 RIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 230/460 (50%), Gaps = 54/460 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y R     EA+  +          P+ +TFP +L +C  L     G ++H  ++K 
Sbjct: 81  MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKH 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D+FV  +L+H+Y  FG  N+AR LFD+  VRD  S+N MI GY +      AL + 
Sbjct: 141 GFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
            EM+  G+  D  T  ++  VC+  +    G  IH  + K+   ++ N+ + + +++MYA
Sbjct: 201 GEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYA 260

Query: 176 KFGMMRHALRV--------------------------------FDQMMERDVVSWNSIIA 203
           K G++  A RV                                F+ M ERDV+SW ++I+
Sbjct: 261 KCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMIS 320

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y Q+     A   F  M+  GI+PD +TLV++ S  A+L      + ++   +  G F 
Sbjct: 321 GYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFN 380

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFE--GLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           ++ I+  AV+DMYAK G I+SA  +F   G  +K    +N++I G AQ+GL   AI VF+
Sbjct: 381 QNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFR 440

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT-------CL 374
            +     + P++ T+V +L A  H G + +G K+   +      F+ +          C+
Sbjct: 441 ELISTG-LKPDEVTFVGVLCACGHSGLIEEGKKLFESM------FNAYGIKPQMEHYGCM 493

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           VD+ G+ G +++A  L  ++P  ++SV W A++S    HG
Sbjct: 494 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG 533


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/640 (39%), Positives = 389/640 (60%), Gaps = 2/640 (0%)

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           A+ ++ +Y    L + A  +F  +      +W ++I  +        AL    EMR  G 
Sbjct: 42  ASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGR 101

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D     S+L  C    ++  G  +H +IV+ G++ +L+  N L+NMY+K   +    +
Sbjct: 102 CPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRK 161

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF+ M  +DVVS+N++IA Y QS     A      M  + ++PD  TL S+  I ++  D
Sbjct: 162 VFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVD 221

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + +HG+++R+G    DV IG+++VDMYAK   I  +  VF  L  +D ISWN+L+ 
Sbjct: 222 VLKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GY QNG  +EA+ +F+ M    ++ P    + S++PA +H+  L  G ++H  V++    
Sbjct: 281 GYVQNGRYNEALRLFRQMVSA-KVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 339

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            ++F+A+ LVDMY KCG I  A  +F ++     V W AII  H +HG G +A++ F +M
Sbjct: 340 RNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEM 399

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
             +GV+P+ + FV++LTACSH GLV E   YF+ M + +G+   L+HY  + DL GRAG 
Sbjct: 400 KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGK 459

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           L  A++FI  M V P  S+W  LL +C +H N+EL    ++++F +DSEN+G YVLM N+
Sbjct: 460 LEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNM 519

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           YA+ G+W+ + ++R   R +GL+K P  S IE+ NK   F +G+R+HP  ++I + L+ +
Sbjct: 520 YASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAV 579

Query: 606 TAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVC 665
             +M+  GYV D S VL DV+E+ K  +L  HSERLA+AFGII++ P + I++ KN+R+C
Sbjct: 580 MEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRIC 639

Query: 666 GDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            DCH   KFIS+ITEREIIVRD++RFHHF  G CSCGDYW
Sbjct: 640 TDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 229/408 (56%), Gaps = 10/408 (2%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
            S A+  F +    SG  PD   FP VLK+C  ++D   G+ +H  +++LG + D++   
Sbjct: 86  FSRALASFVEMR-ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGN 144

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +L++MY +    +  RK+F+ MP +D  S+N +I+GY QSG   +AL ++ EM    +  
Sbjct: 145 ALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKP 204

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T++S+LP+ +   ++L G  IH Y+++ G++ ++++ ++L++MYAK   +  + RVF
Sbjct: 205 DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 264

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
             +  RD +SWNS++A Y Q+     A   F  M  A ++P  +   S+    A L    
Sbjct: 265 SHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLH 324

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             + +HG+++ RG F  ++ I +A+VDMY+K G I +A  +F+ + + D +SW  +I G+
Sbjct: 325 LGKQLHGYVL-RGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGH 383

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCF 366
           A +G   EA+ +F+ M+    + PNQ  +V++L A SHVG + +       + K   L  
Sbjct: 384 ALHGHGHEAVSLFEEMKR-QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 442

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLF--YQVPRSSSVPWNAIISCHGIH 412
           ++     + D+ G+ G++++A       +V  + SV W+ ++S   +H
Sbjct: 443 ELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSV-WSTLLSSCSVH 489


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/705 (38%), Positives = 416/705 (59%), Gaps = 8/705 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D +++  L +G RPD YTFP VL++C  + D   G+++H  VL+ 
Sbjct: 166 MVGGYGKAGFLEEALDLYHRM-LWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRF 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V V  +L+ MY + G    ARK+FD M + D  SWNAMI+G+ ++      L++ 
Sbjct: 225 GLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  + V  + +T+ S+        ++     IH   VK G   ++   N+LI MY+  
Sbjct: 285 LHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSL 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF +M  RD +SW ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 345 GRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASAL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G F+  +++ NA+V+MYAK  II  A  VF+ +P KDV
Sbjct: 405 AACASLGRLDVGIKLHELATSKG-FIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDV 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISW+++I G+  N    EA+  F+ M    ++ PN  T+++ L A +  G+LR G +IHA
Sbjct: 464 ISWSSMIAGFCFNHKNFEALYYFRHM--LADVKPNSVTFIAALAACAATGSLRCGKEIHA 521

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  +  + +V   L+D+Y KCG+   A + F        V WN +++    HG GD 
Sbjct: 522 HVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDI 581

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+FF +ML+ G  PD +TFV+LL  CS +G+VS+G   FH M E++ I P+LKHY CMV
Sbjct: 582 ALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMV 641

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G L   +NFI  MP+ PDA++WGALL  CRIH N+ELG +A+  + E++  + G
Sbjct: 642 DLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAG 701

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL+S++YA+ G W  V +VR   R +GL+   G S +EV   +  F T + +HP+ ++
Sbjct: 702 YHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKE 761

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I D L  +  +MK+ G+ P +S+ L+D +E  K+ +L  HSERLA+AFG+I++ P + I 
Sbjct: 762 INDVLDGIYERMKASGFAPVESYSLED-KEVSKDDVLCGHSERLAVAFGLINTTPGTSIC 820

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           + KN   C  CH   + IS+I  REI VRD+  FHHF+DG CSCG
Sbjct: 821 VTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHFRDGSCSCG 865



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 247/465 (53%), Gaps = 7/465 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A K+F  MP RD  SWN M+ GY ++G   EALD+   M   G   
Sbjct: 134 AMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARP 193

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    ++  G  +H ++++ GL   + V N L+ MYAK G +  A +VF
Sbjct: 194 DVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVF 253

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++++       F  M +  ++P+L+T+ S+T     L+D  
Sbjct: 254 DGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLD 313

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +H   ++RG F  DV   N+++ MY+ LG +  AC VF  +  +D +SW  +I+GY
Sbjct: 314 FAKEIHALAVKRG-FATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGY 372

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +M E N ++P+  T  S L A + +G L  GIK+H           
Sbjct: 373 EKNGFPDKALEVYALM-EVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRY 431

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + VA  LV+MY K   I+ A+ +F  +P    + W+++I+    + +  +AL +FR ML 
Sbjct: 432 IVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA 491

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           + V+P+ +TF++ L AC+ +G +  G+  + H++++    + ++ +   ++DL+ + G  
Sbjct: 492 D-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPN--ALLDLYVKCGQT 548

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           G A         + D   W  +L     HG+ ++     + + E 
Sbjct: 549 GYAWAQFGAHGTK-DVVSWNIMLAGFVAHGHGDIALSFFNEMLET 592



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 6/363 (1%)

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
           HG  F L + N +++M  +FG   HA +VF +M ERDV SWN ++  Y ++     A   
Sbjct: 124 HG-TFGLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDL 182

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  AG +PD+ T   +      + D    R VH  ++R G  +E V + NA+V MYA
Sbjct: 183 YHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVE-VDVLNALVTMYA 241

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G + +A  VF+G+ + D ISWN +I G+ +N      +E+F  M E +E+ PN  T  
Sbjct: 242 KCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLE-DEVEPNLMTIT 300

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+  A   +  L    +IHA  +K     DV     L+ MY   GR+ +A ++F ++   
Sbjct: 301 SVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETR 360

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
            ++ W A+IS +  +G  DKAL  +  M    V PD +T  S L AC+  G +  G +  
Sbjct: 361 DAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIK-L 419

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHG 516
           H +    G   ++     +V+++ ++  +  A    + MP + D   W +++ G C  H 
Sbjct: 420 HELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHK 478

Query: 517 NME 519
           N E
Sbjct: 479 NFE 481


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/703 (38%), Positives = 407/703 (57%), Gaps = 8/703 (1%)

Query: 9   GRLSEAVDCFYQFTLTS--GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
           G   E    F +  ++   GL PD  T   V+ AC  + +   G  +H    KLG   +V
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RL 122
            V  SL+ MY + G    AR LFD    ++  SWN +I GY + G+     ++L EM R 
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
           E V ++ +TV ++LP C+    +LS   IH Y  +HG   +  V+N  +  YAK   +  
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A RVF  M  + V SWN++I A+ Q+  P  +   F  M  +G+ PD  T+ SL    A+
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L   R  + +HGF++R G  + D  IG +++ +Y +   +     +F+ +  K ++ WN 
Sbjct: 515 LKFLRCGKEIHGFMLRNGLEL-DEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNV 573

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +ITG++QN L  EA++ F+ M     I P +     +L A S V ALR G ++H+  +K 
Sbjct: 574 MITGFSQNELPCEALDTFRQMLS-GGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKA 632

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L  D FV   L+DMY KCG ++ + ++F +V       WN II+ +GIHG G KA+  F
Sbjct: 633 HLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELF 692

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
             M ++G RPD  TF+ +L AC+H+GLV+EG +Y   MQ  +G+KP L+HY C+VD+ GR
Sbjct: 693 ELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGR 752

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG L  A   +  MP  PD+ IW +LL +CR +G++E+G   S +L E++      YVL+
Sbjct: 753 AGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLL 812

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SN+YA +GKW+ V +VR   ++ GL K  G S IE+   V  F   + +  + +KI    
Sbjct: 813 SNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTW 872

Query: 603 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
             L  K+  +GY PD S VL ++EE+ K  IL SHSE+LAI+FG++++   + +++ KNL
Sbjct: 873 IKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNL 932

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R+C DCHN  K +S++ +R+IIVRD+ RFHHFK+G+C+CGD+W
Sbjct: 933 RICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/542 (28%), Positives = 276/542 (50%), Gaps = 23/542 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y R     +A+  F +    + L PD +T P V KAC  + D   G+ +H   LK 
Sbjct: 165 LLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKA 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D FV  +L+ MY + G    A K+F+ M  R+  SWN+++    ++G   E   + 
Sbjct: 225 GGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVF 284

Query: 118 DEMRL---EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
             + +   EG+  D  T+ +++P CA    +  G+++H    K G+   + V+N+L++MY
Sbjct: 285 KRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMY 344

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTL 233
           +K G +  A  +FD    ++VVSWN+II  Y +  D          MQ +  ++ + +T+
Sbjct: 345 SKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTV 404

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           +++    +  +   + + +HG+  R G F++D ++ NA V  YAK   ++ A  VF G+ 
Sbjct: 405 LNVLPACSGEHQLLSLKEIHGYAFRHG-FLKDELVANAFVAAYAKCSSLDCAERVFCGME 463

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K V SWN LI  +AQNG   +++++F +M + + ++P++ T  S+L A + +  LR G 
Sbjct: 464 GKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD-SGMDPDRFTIGSLLLACARLKFLRCGK 522

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  +++N L  D F+   L+ +Y +C  +     +F ++   S V WN +I+    + 
Sbjct: 523 EIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNE 582

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL+ FRQML  G++P  I    +L ACS    +  G+         F +K HL   
Sbjct: 583 LPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEV-----HSFALKAHLSED 637

Query: 474 G----CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
                 ++D++ + G +  + N    +  + D ++W  ++    IHG+     + +  LF
Sbjct: 638 AFVTCALIDMYAKCGCMEQSQNIFDRVNEK-DEAVWNVIIAGYGIHGH----GLKAIELF 692

Query: 530 EV 531
           E+
Sbjct: 693 EL 694



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 222/432 (51%), Gaps = 9/432 (2%)

Query: 37  VLKAC---RNLVDGKKIHCSV-LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           +L+AC   +N+  G+K+H  V        DV ++  ++ MY   G  + +R +FD    +
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 93  DSGSWNAMISGYCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           D   +NA++SGY ++    +A+ + L+ +    ++ D  T+  +   CA   ++  G  +
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H   +K G   + FV N LI MY K G +  A++VF+ M  R++VSWNS++ A  ++   
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGF 277

Query: 212 ITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
               G F  +   ++ G+ PD+ T+V++    A + + R    VHG   + G   E+V +
Sbjct: 278 GECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLG-ITEEVTV 336

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N++VDMY+K G +  A A+F+    K+V+SWNT+I GY++ G      E+ Q M+   +
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +  N+ T +++LPA S    L    +IH    ++    D  VA   V  Y KC  +D A 
Sbjct: 397 VRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAE 456

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  +   +   WNA+I  H  +G   K+L+ F  M+D G+ PD  T  SLL AC+   
Sbjct: 457 RVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLK 516

Query: 449 LVSEGQRYFHMM 460
            +  G+     M
Sbjct: 517 FLRCGKEIHGFM 528



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 217/453 (47%), Gaps = 22/453 (4%)

Query: 105 CQSGNAVEALDILDEMRLEG-VSMDPITVASI---LPVCARSDNILSGLLIH-LYIVKHG 159
           C SGN  +AL++L      G VS   I+  +I   L  C    NI  G  +H L    H 
Sbjct: 64  CDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHK 123

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS---NDPITAHG 216
           L  ++ +S  +I MY+  G    +  VFD   E+D+  +N++++ Y ++    D I+   
Sbjct: 124 LRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISL-- 181

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           F   +    + PD  TL  +    A + D     +VH   ++ G F  D  +GNA++ MY
Sbjct: 182 FLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGF-SDAFVGNALIAMY 240

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ--MMEECNEINPNQG 334
            K G + SA  VFE +  ++++SWN+++   ++NG   E   VF+  ++ E   + P+  
Sbjct: 241 GKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVA 300

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T V+++PA + VG +R G+ +H    K  +  +V V   LVDMY KCG + +A +LF   
Sbjct: 301 TMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMN 360

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVRPDHITFVSLLTACS-HSGLVSE 452
              + V WN II  +   G         ++M  +E VR + +T +++L ACS    L+S 
Sbjct: 361 GGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL 420

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
            + + +  +  F +K  L      V  + +   L  A      M  +  +S W AL+GA 
Sbjct: 421 KEIHGYAFRHGF-LKDELV-ANAFVAAYAKCSSLDCAERVFCGMEGKTVSS-WNALIGAH 477

Query: 513 RIHG----NMELGAVASDRLFEVDSENVGYYVL 541
             +G    +++L  V  D   + D   +G  +L
Sbjct: 478 AQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLL 510


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/708 (37%), Positives = 431/708 (60%), Gaps = 15/708 (2%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           +V+ G+ SE +D F Q  ++  + PD  T   V +AC  L     G+ +H  V++   E 
Sbjct: 176 FVQNGQASEGLDMFSQM-ISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIES 234

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +  +  SL+ MY + G    A +LF+++P R +  W  MIS Y QSG   EAL++  +M+
Sbjct: 235 NASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQ 294

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL-FVSNNLINMYAKFGMM 180
              +  + +T+  +L  CAR   +  G  +H ++++  ++  L F+   L+ +YA  G +
Sbjct: 295 EFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNL 354

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R   +VF+ + E+ ++SWN++I+ + ++  P  A   F  MQ  G+ PD  +L S  S  
Sbjct: 355 RDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSAC 414

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             ++  +    +HG+I++ G F +   + NA++DMYAK G ++SA  +FE +  K +++W
Sbjct: 415 GTISFSQLGAQIHGYIIKTGNFND--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTW 472

Query: 301 NTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           N++I G++QNG + EAI +F QM   C  +  ++ T++S++ A SH+G L +G  +H ++
Sbjct: 473 NSMICGFSQNGYSVEAITLFDQMYMNC--VKMDKLTFLSVIQACSHLGYLEKGKWVHHKL 530

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           I   L  D ++ T L DMY KCG +  A  +F ++   S V W+ +I+ +G+HGQ +  +
Sbjct: 531 IMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATI 590

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F QML  G++P+ ITF+ +L+ACSH+G V EG+ YF+ M E FG++P   H+ CMVDL
Sbjct: 591 SLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDL 649

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
             RAG L  A+  I ++P   ++SIWGALL  CRIH  +++       L +VD+ + GYY
Sbjct: 650 LSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYY 709

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
            L+SNIYA  G W+   +VRS+ + +GL+K PG+S+IE++ K+  F  G+ +H + + IY
Sbjct: 710 TLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIY 769

Query: 600 DELRNLTAKMKSLGY--VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
             L N  + + +  Y   PD S V     +  KE+ + SHSE+LAIAFGII++ P + ++
Sbjct: 770 RFLENFRSLVHAQVYDSEPDNSIV--GTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLR 827

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCH++ K  S+IT REII+RD NRFH F++G CSC DYW
Sbjct: 828 ISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 271/521 (52%), Gaps = 7/521 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  YV  G   EAV  +++       +   + FP VLKAC    D   G K+H  V+K 
Sbjct: 70  LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKC 129

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D  V  SLL MY      + A K FD MP+RD  +W++++  + Q+G A E LD+ 
Sbjct: 130 GFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMF 189

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  E V  D +T+ S+   C+   ++  G  +H Y+V+  +E N  ++N+LI MY K 
Sbjct: 190 SQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKL 249

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+F+ +  R    W  +I+ Y QS     A   F  MQ+  ++P+ +T+V + 
Sbjct: 250 GDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVL 309

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A+L   +  RSVHGF++RR    E   +G A++++YA  G +     VFE +  K +
Sbjct: 310 CACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI 369

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNTLI+ + +NG   EA+ +F  M+    + P+  +  S L A   +   + G +IH 
Sbjct: 370 LSWNTLISIFTRNGQPEEALLLFVQMQT-QGLMPDSYSLASSLSACGTISFSQLGAQIHG 428

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK    F+ FV   L+DMY KCG +  A  +F ++   S V WN++I     +G   +
Sbjct: 429 YIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVE 487

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F QM    V+ D +TF+S++ ACSH G + +G ++ H     +G++        + 
Sbjct: 488 AITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTALT 546

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           D++ + G L MAH     M  R   S W  ++    +HG +
Sbjct: 547 DMYSKCGELQMAHGVFDRMSERSIVS-WSVMIAGYGMHGQI 586



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 205/402 (50%), Gaps = 4/402 (0%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           + P+ + C       ++H  +   G       +  L+  Y + G+   ++++FD  P  D
Sbjct: 4   YMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPD 63

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIH 152
           S  W  +I  Y   G   EA+ +  EM  +    +      S+L  C+   ++  G  +H
Sbjct: 64  SFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVH 123

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             ++K G E +  V  +L+ MY +   +  A + FD M  RDVV+W+SI+  + Q+    
Sbjct: 124 GRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQAS 183

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                F+ M    ++PD +T++S+T   ++L   R  RSVHG+++RR     +  + N++
Sbjct: 184 EGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE-IESNASLNNSL 242

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           + MY KLG + SA  +FE +P +    W  +I+ Y Q+G   EA+ VF  M+E  ++ PN
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEF-KMEPN 301

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV-FVATCLVDMYGKCGRIDDAMSLF 391
           Q T V +L A + +G +++G  +H  VI+  +  ++ F+   L+++Y   G + D   +F
Sbjct: 302 QVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVF 361

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
             +   + + WN +IS    +GQ ++AL  F QM  +G+ PD
Sbjct: 362 ETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 403



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 1/231 (0%)

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +++ YA++GI  S+  VF+  P  D   W  LI  Y   G   EA+ ++  M   ++   
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 98

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +   + S+L A S  G L  G K+H RVIK     D  V T L+ MYG+   +DDA   F
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P    V W++I+     +GQ  + L+ F QM+ E V PD +T +S+  ACS  G + 
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            G R  H       I+ +      ++ ++G+ G L  A    +N+P R  A
Sbjct: 219 LG-RSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTA 268


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/685 (39%), Positives = 413/685 (60%), Gaps = 8/685 (1%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL PD  T   V+  C    +   G   H   LKLG   ++ V +SLL MY + G    A
Sbjct: 294 GLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEA 353

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCAR 141
           R LFD    ++  SWN+MI GY +  +   A ++L +M++E  V ++ +T+ ++LPVC  
Sbjct: 354 RVLFDTNE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEE 412

Query: 142 SDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               L    IH Y ++HG ++ +  V+N  +  YAK G + +A  VF  M  + V SWN+
Sbjct: 413 EIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNA 472

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I  + Q+  P  A   +  M+ +G++PDL T+ SL S  A+L      + +HG ++R G
Sbjct: 473 LIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNG 532

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F  D  I  ++V +Y + G I  A   F+ +  K+++ WNT+I G++QN    +A+++F
Sbjct: 533 -FELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMF 591

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
             M   ++I P++ + +  L A S V ALR G ++H   +K+ L    FV   L+DMY K
Sbjct: 592 HQMLS-SKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAK 650

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG ++ + ++F +V     V WN +I+ +GIHG G KA+  F+ M + G RPD +TF++L
Sbjct: 651 CGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIAL 710

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           LTAC+H+GLV+EG  Y   MQ  FGIKP L+HY C+VD+ GRAG L  A   +  +P +P
Sbjct: 711 LTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKP 770

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
           D+ IW +LL +CR + ++++G   +++L E+  +    YVL+SN YA +GKW+ V ++R 
Sbjct: 771 DSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQ 830

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
             ++ GL+K  G S IE+  KV  F  G+ +  +  KI      L  K+  +GY PD S 
Sbjct: 831 RMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSC 890

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           VL ++EEDEK  IL +HSE+LAI+FG++++   + +++ KNLR+C DCHN  K +S+I +
Sbjct: 891 VLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDK 950

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REIIVRD+ RFHHFK+G CSCGDYW
Sbjct: 951 REIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/527 (29%), Positives = 273/527 (51%), Gaps = 18/527 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y+R     +AV  F +    +   PD +T P V+KAC  + D   G+ +H   LK 
Sbjct: 166 LLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKT 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVFV  +L+ MY +FG    A K+FD MP R+  SWN+++    ++G   E+  + 
Sbjct: 226 KVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLF 285

Query: 118 DEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             +    EG+  D  T+ +++P+CAR   +  G++ H   +K GL   L V+++L++MY+
Sbjct: 286 KGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYS 345

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLV 234
           K G +  A  +FD   E++V+SWNS+I  Y +  D   A      MQ +  ++ + +TL+
Sbjct: 346 KCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLL 404

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++  +  +       + +HG+ +R G+   D ++ NA V  YAK G ++ A  VF G+  
Sbjct: 405 NVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMES 464

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K V SWN LI G+ QNG   +A++++ +M   + + P+  T  S+L A + + +L  G +
Sbjct: 465 KMVSSWNALIGGHVQNGFPRKALDLYLLMRG-SGLEPDLFTIASLLSACARLKSLSCGKE 523

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  +++N    D F+   LV +Y +CG+I  A   F  +   + V WN +I+    +  
Sbjct: 524 IHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEF 583

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
              AL+ F QML   + PD I+ +  L ACS    +  G+   H     F +K HL  + 
Sbjct: 584 PFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKE-LHC----FAVKSHLTEHS 638

Query: 475 ----CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
                ++D++ + G +  + N    + ++ + + W  L+    IHG+
Sbjct: 639 FVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVT-WNVLITGYGIHGH 684



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 236/463 (50%), Gaps = 14/463 (3%)

Query: 42  RNLVDGKKIHCSV-LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAM 100
           +N+  G+KIH  +     F+ DV +   L+ MY        +  +F+    ++   WNA+
Sbjct: 107 KNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNAL 166

Query: 101 ISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +SGY ++    +A+ +  EM  L     D  T+  ++  C    ++  G  +H + +K  
Sbjct: 167 LSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTK 226

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           +  ++FV N LI MY KFG +  A++VFD+M +R++VSWNS++ A  ++     ++G F 
Sbjct: 227 VLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFK 286

Query: 220 TMQQA--GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
            +     G+ PD+ T+V++  + A+  + R     HG  ++ G    ++ + ++++DMY+
Sbjct: 287 GLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLG-LCGELKVNSSLLDMYS 345

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G +  A  +F+    K+VISWN++I GY+++     A E+ + M+  +++  N+ T +
Sbjct: 346 KCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLL 404

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           ++LP         +  +IH   +++     D  VA   V  Y KCG +  A  +F  +  
Sbjct: 405 NVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMES 464

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR- 455
                WNA+I  H  +G   KAL+ +  M   G+ PD  T  SLL+AC+    +S G+  
Sbjct: 465 KMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEI 524

Query: 456 YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNM 496
           +  M++  F     L  + C  +V L+ + G + +A  F  NM
Sbjct: 525 HGSMLRNGF----ELDEFICISLVSLYVQCGKILLAKLFFDNM 563



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 3/253 (1%)

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L  +  +  +    R +H FI     F  DV++   +V MY+       +C VF     K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++  WN L++GY +N L  +A+ VF  M    E  P+  T   ++ A   V  +R G  +
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   +K  +  DVFV   L+ MYGK G ++ A+ +F ++P+ + V WN+++     +G  
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVF 278

Query: 416 DKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
           +++   F+ +L  DEG+ PD  T V+++  C+  G V  G   FH +  + G+   LK  
Sbjct: 279 EESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKVN 337

Query: 474 GCMVDLFGRAGHL 486
             ++D++ + G+L
Sbjct: 338 SSLLDMYSKCGYL 350


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 407/710 (57%), Gaps = 35/710 (4%)

Query: 29  PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLF 86
           P  +    +L+ C ++   +++HC  +K G   +  +   ++   C   +G    AR+LF
Sbjct: 16  PPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLF 75

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D++P  +   WN MI GY +       + +  EM   GV  D  T   +     R   + 
Sbjct: 76  DEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE 135

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H +++KHGL++N+FV   L+ MY   G +  A  VFD   + DV++WN II+AY 
Sbjct: 136 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +      +   F  M+   + P  +TLV + S  ++L D R  + VH ++ +      ++
Sbjct: 196 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCKVESNL 254

Query: 267 IIGNAVVDMYAKLGIINSACAVF-------------------------------EGLPVK 295
           ++ NA++DMYA  G ++SA  +F                               + +P K
Sbjct: 255 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 314

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D +SW  +I GY ++    EA+E+F+ M+  N + P++ T VS+L A +H+GAL  G  I
Sbjct: 315 DYVSWTAMIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWI 373

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              + +N +  D+FV   L+DMY KCG +D A S+F ++ +     W A+I    ++G G
Sbjct: 374 RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHG 433

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           +KAL+ F  ML   + PD IT++ +L+AC+H+GLV +G++YF  M  + GI+P++ HYGC
Sbjct: 434 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 493

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL  RAG L  A+  I+NMP++ ++ +WGALL  CR++   ++  +   ++ E++ +N
Sbjct: 494 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 553

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+ NIYA   +W  + E+R +  D+G+KKTPG S IE+N +V  F  G+R+HP+ 
Sbjct: 554 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQT 613

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           + I  +L  +T  +K  GY PD S V  D+ E++KE+ +  HSE+LAIAFG+I+SPP   
Sbjct: 614 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 673

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLR+C DCHN  K +S++  RE+IVRD  RFHHFK G+CSC DYW
Sbjct: 674 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 267/565 (47%), Gaps = 66/565 (11%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  G++PD YTFP + K       L  G+++H  VLK G +++VFV  +L+ MY 
Sbjct: 105 LYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYL 164

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  + AR +FD  P  D  +WN +IS Y + G   E+  +   M  + V    +T+  
Sbjct: 165 LCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVL 224

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C++  ++ +G  +H Y+    +E NL + N +I+MYA  G M  AL +F  M  RD
Sbjct: 225 VLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRD 284

Query: 195 VVSWNSIIA-------------------------------AYEQSNDPITAHGFFTTMQQ 223
           ++SW +I++                                Y +SN    A   F  MQ 
Sbjct: 285 IISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQA 344

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             ++PD  T+VS+ +  A L        +  +I  R     D+ + NA++DMY K G ++
Sbjct: 345 TNVKPDEFTMVSVLTACAHLGALELGEWIRTYI-DRNKIKNDLFVRNALIDMYFKCGDVD 403

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A ++F  +  +D  +W  +I G A NG   +A+++F  M + + I P++ TY+ +L A 
Sbjct: 404 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS-ILPDEITYIGVLSAC 462

Query: 344 SHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           +H G + +G K   R+  ++ +  ++    CLVD+  + GR+ +A  +   +P +++S+ 
Sbjct: 463 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIV 522

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYF 457
           W A+++   ++ + D A    +Q+L+  + PD    ++   ++  AC     + E     
Sbjct: 523 WGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACKRWNDLRE----L 576

Query: 458 HMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             M  + GIK   K  GC ++++ GR       H F+      P      A L   ++  
Sbjct: 577 RQMMMDKGIK---KTPGCSLIEMNGR------VHEFVAGDRSHPQTKNIDAKLD--KMTQ 625

Query: 517 NMELGAVASD------RLFEVDSEN 535
           +++L   + D       + E D EN
Sbjct: 626 DLKLAGYSPDISEVFLDIAEEDKEN 650



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y+R  R  EA++ F     T+ ++PD +T   VL AC +L     G+ I   + + 
Sbjct: 322 MIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN 380

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D+FV  +L+ MY + G  + A  +F +M  RD  +W AMI G   +G+  +ALD+ 
Sbjct: 381 KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMF 440

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M    +  D IT   +L  C  +  +  G    L +  +HG+E N+     L+++ A+
Sbjct: 441 SNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLAR 500

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD----LL 231
            G ++ A  V + M ++ + + W +++A      +   A       Q   ++PD     +
Sbjct: 501 AGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAE--MVVKQILELEPDNGAVYV 558

Query: 232 TLVSLTSIVAQLNDCRNSRSV 252
            L ++ +   + ND R  R +
Sbjct: 559 LLCNIYAACKRWNDLRELRQM 579


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/680 (38%), Positives = 401/680 (58%), Gaps = 11/680 (1%)

Query: 32  YTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           +T   VLK C   +NL  G+ IH  ++K G+E + F+   L+ MY + GLA  A  +F  
Sbjct: 315 FTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKT 374

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           +   D   W+A+I+   Q G + E++ +   MRL     +  T+ S+L     + N+  G
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH  + K+G E ++ VSN L+ MY K G +    ++++ M++RD++SWN+ ++     
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 209 ---NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
              + P+T    F  M + G  P++ T +S+    + L D    R VH  I++     ++
Sbjct: 495 GMYDRPLT---IFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ-LDDN 550

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  A++DMYAK   +  A   F  L V+D+ +W  +IT YAQ     +A+  F+ M++
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ 610

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              + PN+ T    L   S + +L  G ++H+ V K+    D+FV + LVDMY KCG ++
Sbjct: 611 -EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCME 669

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A +LF  + R  ++ WN II  +  +GQG+KAL  FR MLDEG+ PD +TF  +L+ACS
Sbjct: 670 EAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV EG+ +F+ M  +FGI P + H  CMVD+ GR G      +FIQ M +  +A IW
Sbjct: 730 HQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIW 789

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             +LGA ++H N+ LG  A+++LFE+  E    Y+L+SNI+A  G+W+ V  VRSL   +
Sbjct: 790 ETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSK 849

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+KK PG S +E N +V  F + + +HP+ ++I+ +L  L  ++ S+ YVP   +VL +V
Sbjct: 850 GVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNV 909

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            E EK+  L  HSERLA+ F +IS+  +  I+IFKNLR+C DCH+  K IS IT +EI+V
Sbjct: 910 GETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVV 969

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD  RFHHFK+G CSC D+W
Sbjct: 970 RDVRRFHHFKNGACSCNDFW 989



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 277/558 (49%), Gaps = 9/558 (1%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            +Q     G+ P+ +T    LKAC     L  GK++H    KLG   D+FV ++L+ +Y 
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G   +A K+F  MP ++  +WN +++GY Q G+    L +   M    V  +  T+ +
Sbjct: 260 KCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT 319

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  CA S N+  G +IH  I+K G E N F+   L++MY+K G+   A+ VF  + + D
Sbjct: 320 VLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD 379

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +V W+++I   +Q      +   F  M+     P+  T+ SL S      + +  +S+H 
Sbjct: 380 IVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            + + G F  DV + NA+V MY K G ++    ++E +  +D+ISWN  ++G    G+  
Sbjct: 440 CVWKYG-FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
             + +F  M E   I PN  T++SIL + S +  +  G ++HA +IKN L  + FV T L
Sbjct: 499 RPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTAL 557

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KC  ++DA   F ++       W  II+ +    QG+KALN+FRQM  EGV+P+ 
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T    L+ CS    +  GQ+  H M  + G    +     +VD++ + G +  A    +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQ-LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKW 552
            + +R D   W  ++     +G       A   + +  +  + V +  ++S         
Sbjct: 677 AL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735

Query: 553 EGVDEVRSLARDRGLKKT 570
           EG +   S+ RD G+  T
Sbjct: 736 EGKEHFNSMYRDFGISPT 753



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 247/484 (51%), Gaps = 17/484 (3%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L+ C   R+L   K IH  ++K     D  +  SL+++Y +   +  AR +   MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  SW A+I G    G A +++ +  EM+ EG+  +  T+A+ L  C+    +  G  
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H    K GL  +LFV + L+++YAK G +  A ++F  M E++ V+WN ++  Y Q  D
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
                  F +M +  ++ +  TL ++    A   + +  + +H  I++ G +  +  IG 
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG-YEGNEFIGC 353

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            +VDMY+K G+   A  VF+ +   D++ W+ LIT   Q G + E+I++F +M   + + 
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL- 412

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PNQ T  S+L A ++ G L+ G  IHA V K     DV V+  LV MY K G + D   L
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 391 FYQVPRSSSVPWNAIISCHGIH--GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           +  +     + WNA +S  G+H  G  D+ L  F  ML+EG  P+  TF+S+L +CS   
Sbjct: 473 YESMVDRDLISWNAYLS--GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 449 LVSEG-QRYFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            V  G Q + H+++ +        ++ C  ++D++ +  +L  A      + VR D   W
Sbjct: 531 DVHYGRQVHAHIIKNQLDD----NNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTW 585

Query: 506 GALL 509
             ++
Sbjct: 586 TVII 589


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/658 (40%), Positives = 392/658 (59%), Gaps = 36/658 (5%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K +H  V  L F  +  +   L+  Y   G   +AR +FD +P R+   +N MI  Y  +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               +AL +  +M   G S D  T   +L  C+ SDN+  GL +H  + K GL+ NLFV 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N LI +Y K G +  A  V D+M  +DVVSWNS++A Y Q+     A      M     +
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  T+ SL   V       N+ S            E+V        +Y +         
Sbjct: 232 PDACTMASLLPAVT------NTSS------------ENV--------LYVE--------E 257

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  L  K ++SWN +I+ Y +N +  ++++++  M +C E+ P+  T  S+L A   + 
Sbjct: 258 MFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKC-EVEPDAITCASVLRACGDLS 316

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G +IH  V +  LC ++ +   L+DMY +CG ++DA  +F ++       W ++IS
Sbjct: 317 ALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLIS 376

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+ GQG  A+  F +M + G  PD I FV++L+ACSHSGL++EG+ YF  M +++ I 
Sbjct: 377 AYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKIT 436

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++H+ C+VDL GR+G +  A+N I+ MP++P+  +WGALL +CR++ NM++G +A+D+
Sbjct: 437 PIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADK 496

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L ++  E  GYYVL+SNIYA  G+W  V  +RSL + R ++K PG S++E+NN+V  F  
Sbjct: 497 LLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLA 556

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+  HP+ ++IY+EL  L  KMK LGYVP     L DVEE++KE  L  HSE+LAI F I
Sbjct: 557 GDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAI 616

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +++  +SPI+I KNLRVCGDCH   K IS+I +REI++RD+NRFHHFKDGICSCGDYW
Sbjct: 617 LNT-QESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 206/406 (50%), Gaps = 46/406 (11%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           ++  ++ G  PD YT+P VLKAC    NL  G ++H +V K+G + ++FV   L+ +Y +
Sbjct: 121 FRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGK 180

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVA 133
            G    AR + D+M  +D  SWN+M++GY Q+    +ALDI  EM  +GV   P   T+A
Sbjct: 181 CGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM--DGVRQKPDACTMA 238

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+LP    + +                E  L+V    +N+  K                 
Sbjct: 239 SLLPAVTNTSS----------------ENVLYVEEMFMNLEKK----------------- 265

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
            +VSWN +I+ Y +++ P  +   +  M +  ++PD +T  S+      L+     R +H
Sbjct: 266 SLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIH 325

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            ++ R+     ++++ N+++DMYA+ G +  A  VF+ +  +DV SW +LI+ Y   G  
Sbjct: 326 EYVERKK-LCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-- 371
             A+ +F  M+   + +P+   +V+IL A SH G L +G K + + + +       +   
Sbjct: 385 YNAVALFTEMQNSGQ-SPDSIAFVAILSACSHSGLLNEG-KFYFKQMTDDYKITPIIEHF 442

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
            CLVD+ G+ GR+D+A ++  Q+P + +   W A++S   ++   D
Sbjct: 443 ACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMD 488


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/637 (41%), Positives = 387/637 (60%), Gaps = 35/637 (5%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y   G     R +FD++P ++   +N MI  Y  +    +AL +   M   G+  D
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T   +L   + S+++  G+ IH  +V+ GL+ N+FV N LI+MY K G +  A RV D
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           QM  RDVVSWNS++A   ++     A      M+  G++PD  T+ SL   V   N C +
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT--NTCLD 254

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           + S                    V +M+ KL               K ++SWN +I  Y 
Sbjct: 255 NVSF-------------------VKEMFMKLA-------------NKSLVSWNVMIAVYM 282

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            N + +EA+++F  ME+ + ++P+  +  S+LPA   + AL  G +IH  V++  L  ++
Sbjct: 283 NNSMPAEAVDIFLQMED-HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL 341

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            +   L+DMY KCG ++ A  +F Q+     V W ++IS +G++G+G  A++ F +M D 
Sbjct: 342 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 401

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+ PD I FVS+L+ACSH+GL+ EG+ YF +M EE  I P ++H+ CMVDL GRAG +  
Sbjct: 402 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 461

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A+ FI+ MP+ P+  +WGALL ACR++ NM +G +A+D+LF++  E  GYYVL+SNIYA 
Sbjct: 462 AYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAK 521

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
            G+WE V  VRS+ + +G+KK PG S+ E++N+V  F  G+++HP+ ++IY+EL     K
Sbjct: 522 AGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGK 581

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           MK  GYVP+    L DVEE++KE  L  HSE+LAIAF I+++ P SPI+I KNLRVCGDC
Sbjct: 582 MKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDC 641

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H   K IS+I  REI +RD+NRFHHF +G+CSCGDYW
Sbjct: 642 HIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 211/414 (50%), Gaps = 45/414 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  YV     S+A+  F       G+ PD YT+P VLKA     D   G +IH +V+++
Sbjct: 108 MIRSYVNNHLYSDALLVFKNMA-GHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRV 166

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +VFV   L+ MY + G    A ++ D MP RD  SWN++++G  ++G   +AL++ 
Sbjct: 167 GLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVC 226

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L G+  D  T+AS+LP       + +  L ++  VK                    
Sbjct: 227 KEMELLGLKPDAGTMASLLPA------VTNTCLDNVSFVK-------------------- 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                   +F ++  + +VSWN +IA Y  ++ P  A   F  M+   + PD +++ S+ 
Sbjct: 261 -------EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 313

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L+     R +H +++R+     ++++ NA++DMYAK G +  A  VF+ +  +DV
Sbjct: 314 PACGDLSALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 372

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG---IK 354
           +SW ++I+ Y  NG   +A+ +F  M++   +NP+   +VS+L A SH G L +G    K
Sbjct: 373 VSWTSMISAYGMNGKGRDAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLLDEGRYYFK 431

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           +     K     + FV  C+VD+ G+ G++D+A     Q+P   +   W A++S
Sbjct: 432 LMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLS 483



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 165/354 (46%), Gaps = 15/354 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-RN--LVDGKKIHCSVLKL 57
           +IS+Y +CG L EA     Q         D  ++  ++  C RN    D  ++   +  L
Sbjct: 178 LISMYGKCGCLVEACRVLDQMPCR-----DVVSWNSLVAGCARNGQFDDALEVCKEMELL 232

Query: 58  GFEWDVFVAASLLHMYCRFGLANVA--RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G + D    ASLL       L NV+  +++F  +  +   SWN MI+ Y  +    EA+D
Sbjct: 233 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 292

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           I  +M    V  D I++AS+LP C     +L G  IH Y+V+  L+ NL + N LI+MYA
Sbjct: 293 IFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 352

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G + +A  VFDQM  RDVVSW S+I+AY  +     A   F+ MQ  G+ PD +  VS
Sbjct: 353 KCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVS 412

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S  +        R     +      +  +     +VD+  + G ++ A    + +P++
Sbjct: 413 VLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPME 472

Query: 296 -DVISWNTLITG-YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            +   W  L++     + +    +   Q+ + C E     G YV +   Y+  G
Sbjct: 473 PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPE---QSGYYVLLSNIYAKAG 523


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/738 (36%), Positives = 420/738 (56%), Gaps = 68/738 (9%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASL--------------------- 69
           +  +LK C   +N    KK+HC +LK   + + F++ +L                     
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 70  ----------LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
                     L +Y + GL +  +++F+ MP RD  SWN  ISGY   G+  +A+ +   
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 120 M-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           M +   ++++ IT +++L +C++   +  G  I+  I+K G   ++FV + L++MY K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 179 MMRHALRVFDQMMERDVV-------------------------------SWNSIIAAYEQ 207
           ++  A R FD+M ER+VV                               SW  +I    Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A   F  M+ AG   D  T  S+ +    L      + +H +++R     ++V 
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD-HKDNVF 306

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G+A+VDMY+K   I SA  VF+ +P K+VISW  ++ GY QNG + EA+++F  M+  N
Sbjct: 307 VGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR-N 365

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + P+  T  S++ + +++ +L +G + H R + + L   + V+  L+ +YGKCG  +++
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENS 425

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             LF ++     V W A+++ +   G+ ++ +  F +ML  G++PD +TF+ +L+ACS +
Sbjct: 426 HRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRA 485

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV +G +YF  M +E GI P + H  C++DL GRAG L  A NFI NMP  PD   W  
Sbjct: 486 GLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWAT 545

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL +CR+HG+ME+G  A+D L  ++ +N   YVL+S++YA+ GKW+ V ++R   RD+ +
Sbjct: 546 LLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRV 605

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           +K PG+S I+   KV +F   +++ P   +IY EL  L  KM   GYVPD S VL DVEE
Sbjct: 606 RKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEE 665

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            EK  +L  HSE+LAIAFG+I  PP  PI++ KNLRVCGDCHN TKFIS+IT+REI+VRD
Sbjct: 666 SEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRD 725

Query: 688 SNRFHHFKDGICSCGDYW 705
           + RFH FKDG CSCGD+W
Sbjct: 726 AVRFHLFKDGTCSCGDFW 743



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 223/448 (49%), Gaps = 38/448 (8%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKLG 58
           IS Y   G  S+AV  +      + +  +  TF  +L  C     VD G++I+  +LK G
Sbjct: 109 ISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFG 168

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMP---------------------------- 90
           F  DVFV + L+ MY + GL   A++ FD+MP                            
Sbjct: 169 FGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFC 228

Query: 91  ---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
               RDS SW  MI+G  Q+G   EALD+  EMRL G +MD  T  S+L  C     +  
Sbjct: 229 GLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGE 288

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH Y+++   + N+FV + L++MY+K   ++ A  VF +M +++V+SW +++  Y Q
Sbjct: 289 GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQ 348

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A   F  MQ+ G++PD  TL S+ S  A L         H   +  G  +  + 
Sbjct: 349 NGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG-LISFIT 407

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + NA++ +Y K G   ++  +F  + ++D +SW  L+ GYAQ G A+E I +F+ M   +
Sbjct: 408 VSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERM-LAH 466

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV-ATCLVDMYGKCGRIDD 386
            + P+  T++ +L A S  G + +G++    +IK      +    TC++D+ G+ GR+++
Sbjct: 467 GLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEE 526

Query: 387 AMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           A +    +P     V W  ++S   +HG
Sbjct: 527 ARNFINNMPCHPDVVGWATLLSSCRVHG 554



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 172/362 (47%), Gaps = 9/362 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+  ++ G   EA+D F +  L +G   D +TF  VL AC +L+   +GK+IH  V++ 
Sbjct: 241 MITGLMQNGLEREALDMFREMRL-AGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + +VFV ++L+ MY +      A  +F  MP ++  SW AM+ GY Q+G + EA+ I 
Sbjct: 300 DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIF 359

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+  GV  D  T+ S++  CA   ++  G   H   +  GL   + VSN LI +Y K 
Sbjct: 360 FEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKC 419

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G   ++ R+F +M  RD VSW +++A Y Q        G F  M   G++PD +T + + 
Sbjct: 420 GSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVL 479

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
           S  ++             +++    M  V     ++D+  + G +  A      +P   D
Sbjct: 480 SACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPD 539

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSHVGALRQG 352
           V+ W TL++    +G           +      NP     +S L A    +  V  LR+G
Sbjct: 540 VVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRG 599

Query: 353 IK 354
           ++
Sbjct: 600 MR 601


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/659 (40%), Positives = 396/659 (60%), Gaps = 36/659 (5%)

Query: 48   KKIHCSV-LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            KK+H  + +      +  +   L+  Y   G     R +FD++P ++   +N MI  Y  
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 107  SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            +    +AL +   M   G+  D  T   +L   + S+++  G+ IH  +V+ GL+ N+FV
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 1163

Query: 167  SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
             N LI+MY K G +  A RV DZM  RDVVSWNS++A   ++     A      M+  G+
Sbjct: 1164 GNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGL 1223

Query: 227  QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            +PD  T+ SL   V   N C ++ S                    V +M+ KL       
Sbjct: 1224 KPDAGTMASLLPAVT--NTCLDNVSF-------------------VKEMFMKLA------ 1256

Query: 287  AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
                    K ++SWN +I  Y  N + +EA+++F  ME+ + ++P+  +  S+LPA   +
Sbjct: 1257 -------NKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED-HAVDPDAISIASVLPACGDL 1308

Query: 347  GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             AL  G +IH  V++  L  ++ +   L+DMY KCG ++ A  +F Q+     V W ++I
Sbjct: 1309 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 1368

Query: 407  SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
            S +G++G+G  A++ F +M D G+ PD I FVS+L+ACSH+GL+ EG+ YF +M EE  I
Sbjct: 1369 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 467  KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
             P ++H+ CMVDL GRAG +  A+ FI+ MP+ P+  +WGALL ACR++ NM +G +A+D
Sbjct: 1429 VPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAAD 1488

Query: 527  RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            +LF++  E  GYYVL+SNIYA  G+WE V  VRS+ + +G+KK PG S+ E++N+V  F 
Sbjct: 1489 QLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFL 1548

Query: 587  TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
             G+++HP+ ++IY+EL  L  KMK  GYVP+    L DVEE++KE  L  HSE+LAIAF 
Sbjct: 1549 AGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFA 1608

Query: 647  IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I+++ P SPI+I KNLRVCGDCH   K IS+I  REI +RD+NRFHHF +G+CSCGDYW
Sbjct: 1609 ILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 212/414 (51%), Gaps = 45/414 (10%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
            MI  YV     S+A+  F       G+ PD YT+P VLKA     D   G +IH +V+++
Sbjct: 1097 MIRSYVNNHLYSDALLVFKNMA-GHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRV 1155

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G + +VFV   L+ MY + G    A ++ D+MP RD  SWN++++G  ++G   +AL++ 
Sbjct: 1156 GLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVC 1215

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             EM L G+  D  T+AS+LP       + +  L ++  VK                    
Sbjct: 1216 KEMELLGLKPDAGTMASLLPA------VTNTCLDNVSFVK-------------------- 1249

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                    +F ++  + +VSWN +IA Y  ++ P  A   F  M+   + PD +++ S+ 
Sbjct: 1250 -------EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 1302

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 L+     R +H +++R+     ++++ NA++DMYAK G +  A  VF+ +  +DV
Sbjct: 1303 PACGDLSALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 1361

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG---IK 354
            +SW ++I+ Y  NG   +A+ +F  M++   +NP+   +VS+L A SH G L +G    K
Sbjct: 1362 VSWTSMISAYGMNGKGRDAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 355  IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
            +     K     + FV  C+VD+ G+ G++D+A     Q+P   +   W A++S
Sbjct: 1421 LMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLS 1472



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 165/354 (46%), Gaps = 15/354 (4%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-RN--LVDGKKIHCSVLKL 57
            +IS+Y +CG L EA     Z         D  ++  ++  C RN    D  ++   +  L
Sbjct: 1167 LISMYGKCGCLVEACRVLDZMPCR-----DVVSWNSLVAGCARNGQFDDALEVCKEMELL 1221

Query: 58   GFEWDVFVAASLLHMYCRFGLANVA--RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
            G + D    ASLL       L NV+  +++F  +  +   SWN MI+ Y  +    EA+D
Sbjct: 1222 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 1281

Query: 116  ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            I  +M    V  D I++AS+LP C     +L G  IH Y+V+  L+ NL + N LI+MYA
Sbjct: 1282 IFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 1341

Query: 176  KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            K G + +A  VFDQM  RDVVSW S+I+AY  +     A   F+ MQ  G+ PD +  VS
Sbjct: 1342 KCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVS 1401

Query: 236  LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
            + S  +        R     +      +  +     +VD+  + G ++ A    + +P++
Sbjct: 1402 VLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPME 1461

Query: 296  -DVISWNTLITG-YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
             +   W  L++     + +    +   Q+ + C E     G YV +   Y+  G
Sbjct: 1462 PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPE---QSGYYVLLSNIYAKAG 1512


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/720 (37%), Positives = 422/720 (58%), Gaps = 32/720 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           ++S Y R G   E +    Q  +  G+ P+ +TF  VL A  +   +  G ++H  ++K 
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQM-EGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE+  FV  +L+ MY +  +   A  +FD M VRDS +WN MI GY   G  +E   + 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MRL GV +      + L +C++   +     +H  +VK+G EF   +   L+  Y+K 
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             +  A ++F       +VV+W ++I  + Q+N+   A   F  M + G++P+  T  ++
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 237 -----TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                +S+++QL         H  I++  ++ +   +  A++D Y K G +  +  VF  
Sbjct: 415 LAGKPSSLLSQL---------HAQIIK-AYYEKVPSVATALLDAYVKTGNVVESARVFYS 464

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGA-L 349
           +P KD+++W+ ++TG AQ   + +A+EVF Q+++E   + PN+ T+ S++ A S   A +
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEG--VKPNEYTFSSVINACSSSAATV 522

Query: 350 RQGIKIHARVIK----NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
             G +IHA  +K    N LC    V++ L+ MY K G I+ A  +F +      V WN++
Sbjct: 523 EHGKQIHATAVKSGKSNALC----VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSM 578

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I+ +G HG   KAL  F+ M ++G+  D +TF+ +LTAC+H+GLV EG++YF++M +++ 
Sbjct: 579 ITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYH 638

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           I   ++HY CMVDL+ RAG    A + I  MP     +IW  LL ACR+H N+ELG +A+
Sbjct: 639 IDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAA 698

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           ++L  +   +   YVL+SNI+A  G WE    VR L  +R +KK  G S IE+ N++  F
Sbjct: 699 EKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSF 758

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
             G+ +HP  + +Y +L  L+ K+K +GY PD ++V  DVEE+ KE IL+ HSERLAIA+
Sbjct: 759 LAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAY 818

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           G+I+ PP +PIQI KNLR+CGDCHN  + IS I ER +IVRDSNRFHHFK G+CSCG YW
Sbjct: 819 GLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/500 (30%), Positives = 253/500 (50%), Gaps = 15/500 (3%)

Query: 24  TSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           +SGL  D  T    LK C  L D   G+++HC  LK GF  DV V  SL+ MY +     
Sbjct: 97  SSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFE 156

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
             R +FD+M +++  SW +++SGY ++G   E + ++++M++EGV+ +  T A++L   A
Sbjct: 157 DGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               I  G+ +H  IVK+G EF  FV N LI MY K  M+  A  VFD M+ RD V+WN 
Sbjct: 217 DESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNI 276

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I  Y      +     F  M+ AG++       +   + +Q  +   ++ +H  +++ G
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNG 336

Query: 261 W-FMEDVIIGNAVVDMYAKLGIINSACAVFE-GLPVKDVISWNTLITGYAQNGLASEAIE 318
           + F +D  I  A++  Y+K   ++ A  +F       +V++W  +I G+ QN    +A++
Sbjct: 337 YEFAQD--IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVD 394

Query: 319 VF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F QM  E   + PN  TY ++L A      L Q   +HA++IK        VAT L+D 
Sbjct: 395 LFCQMSREG--VRPNHFTYSTVL-AGKPSSLLSQ---LHAQIIKAYYEKVPSVATALLDA 448

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y K G + ++  +FY +P    V W+A+++        +KA+  F Q++ EGV+P+  TF
Sbjct: 449 YVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTF 508

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            S++ ACS S    E  +  H    + G    L     ++ ++ + G++  A        
Sbjct: 509 SSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE 568

Query: 498 VRPDASIWGALLGACRIHGN 517
            R D   W +++     HG+
Sbjct: 569 ER-DIVSWNSMITGYGQHGD 587



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 215/431 (49%), Gaps = 13/431 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD+ P++D   +N ++  + ++ +  EAL +  ++   G+ +D +T++  L VC  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             + + G  +H   +K G   ++ V  +L++MY K         +FD+M  ++VVSW S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 202 IAAYEQS--NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++ Y ++  ND +        MQ  G+ P+  T  ++   +A  +       VH  I++ 
Sbjct: 177 LSGYARNGLNDEVIH--LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F     + NA++ MY K  ++  A AVF+ + V+D ++WN +I GYA  G   E  ++
Sbjct: 235 G-FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQM 293

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M     +  ++  + + L   S    L    ++H  V+KN   F   + T L+  Y 
Sbjct: 294 FHRMRLAG-VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 380 KCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           KC  +D+A  LF     + + V W A+I     +   +KA++ F QM  EGVRP+H T+ 
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYS 412

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           ++L A   S L+S  Q +  +++  +   P +     ++D + + G++  +     ++P 
Sbjct: 413 TVL-AGKPSSLLS--QLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPA 467

Query: 499 RPDASIWGALL 509
           + D   W A+L
Sbjct: 468 K-DIVAWSAML 477



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 13/312 (4%)

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +KH L  + F+ +  +   +     R+A ++FD+   +D+  +N ++  + ++N    A 
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  +  +G+  D LTL     +   L D    R VH   ++ G F+EDV +G ++VDM
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSG-FLEDVSVGTSLVDM 148

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K         +F+ + +K+V+SW +L++GYA+NGL  E I +   M +   +NPN  T
Sbjct: 149 YMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM-QMEGVNPNGFT 207

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           + ++L A +    +  G+++HA ++KN   F  FV   L+ MY K   + DA ++F  + 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS---------- 445
              SV WN +I  +   G   +    F +M   GV+     F + L  CS          
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 446 -HSGLVSEGQRY 456
            H G+V  G  +
Sbjct: 328 LHCGVVKNGYEF 339


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/710 (37%), Positives = 422/710 (59%), Gaps = 25/710 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G   EA+D +Y+     G+R D +TFP V+KAC  L+    G+K+H  ++K+
Sbjct: 95  IIRGYTNNGLFQEAIDFYYRME-CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKI 153

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V   L+ MY + G   +A K+FD+MPVRD  SWN+M+SGY   G+ + +L   
Sbjct: 154 GFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCF 213

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G   D   + S L  C+    + SG+ IH  +++  LE ++ V  +LI+MY K 
Sbjct: 214 KEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKC 273

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + +A RVF+++  +++V+WN++I   ++ +  I               PD++T+++L 
Sbjct: 274 GKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVI---------------PDVITMINLL 318

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +Q       +S+HGF +R+  F+  +++  A+VDMY K G +  A  VF  +  K++
Sbjct: 319 PSCSQSGALLEGKSIHGFAIRK-MFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNM 377

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIH 356
           +SWNT++  Y QN    EA+++FQ +   NE + P+  T  S+LPA + + +  +G +IH
Sbjct: 378 VSWNTMVAAYVQNEQYKEALKMFQHI--LNEPLKPDAITIASVLPAVAELASRSEGKQIH 435

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + ++K  L  + F++  +V MY KCG +  A   F  +     V WN +I  + IHG G 
Sbjct: 436 SYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGR 495

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            ++ FF +M  +G +P+  TFVSLLTACS SGL+ EG  +F+ M+ E+GI P ++HYGCM
Sbjct: 496 TSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCM 555

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GR G+L  A  FI+ MP+ P A IWG+LL A R H ++ L  +A+  +  +  +N 
Sbjct: 556 LDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNT 615

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YVL+SN+YA  G+WE VD ++ L +++GL KT G S +++N + + F   +R+H    
Sbjct: 616 GCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTN 675

Query: 597 KIYDELRNLTAKMKSLGYVPD-KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            IYD L  L  K+    Y+     F   DV + ++ +    HS +LAI FG+IS+   +P
Sbjct: 676 LIYDVLDILLKKIGEDIYLHSLTKFRPLDVAK-KRGNSPEYHSVKLAICFGLISTAIGNP 734

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + + KN R+C DCH   K ISQ+T+REI+V D+  FHHF+DG CSC DYW
Sbjct: 735 VIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 226/440 (51%), Gaps = 19/440 (4%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           GL   A  +F+ M   D+  WN +I GY  +G   EA+D    M  EG+  D  T   ++
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C     ++ G  +H  ++K G + +++V N LI+MY K G +  A +VFD+M  RD+V
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWNS+++ Y+   D +++   F  M + G + D   ++S     +  +  R+   +H  +
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQV 251

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +R    + D+++  +++DMY K G ++ A  VF  +  K++++WN +I G          
Sbjct: 252 IRSELEL-DIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG---------- 300

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
                 M+E +++ P+  T +++LP+ S  GAL +G  IH   I+      + + T LVD
Sbjct: 301 ------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVD 354

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MYGKCG +  A  +F Q+   + V WN +++ +  + Q  +AL  F+ +L+E ++PD IT
Sbjct: 355 MYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAIT 414

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
             S+L A +     SEG++  H    + G+  +      +V ++ + G L  A  F   M
Sbjct: 415 IASVLPAVAELASRSEGKQ-IHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGM 473

Query: 497 PVRPDASIWGALLGACRIHG 516
            V  D   W  ++ A  IHG
Sbjct: 474 -VCKDVVSWNTMIMAYAIHG 492



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 174/338 (51%), Gaps = 19/338 (5%)

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           + + G+M +AL +F++M   D   WN II  Y  +     A  F+  M+  GI+ D  T 
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
             +     +L      + VHG +++ G F  DV + N ++DMY K+G I  A  VF+ +P
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIG-FDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           V+D++SWN++++GY  +G    ++  F+ M          G  +S L A S    LR G+
Sbjct: 187 VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGM-ISALGACSIEHCLRSGM 245

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH +VI++ L  D+ V T L+DMYGKCG++D A  +F ++   + V WNA+I   G+  
Sbjct: 246 EIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG--GMQE 303

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
                        D+ V PD IT ++LL +CS SG + EG+   H         P+L   
Sbjct: 304 -------------DDKVIPDVITMINLLPSCSQSGALLEGKS-IHGFAIRKMFLPYLVLE 349

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
             +VD++G+ G L +A +    M  +   S W  ++ A
Sbjct: 350 TALVDMYGKCGELKLAEHVFNQMNEKNMVS-WNTMVAA 386


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/720 (37%), Positives = 421/720 (58%), Gaps = 32/720 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           ++S Y R G   E +    Q  +  G+ P+ +TF  VL A  +   +  G ++H  ++K 
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQM-EGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE+  FV  +L+ MY +  +   A  +FD M VRDS +WN MI GY   G  +E   + 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MRL GV +      + L +C++   +     +H  +VK+G EF   +   L+  Y+K 
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             +  A ++F       +VV+W ++I  + Q+N+   A   F  M + G++P+  T  ++
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 237 -----TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                +S+++QL         H  I++  ++ +   +  A++D Y K G +  +  VF  
Sbjct: 415 LAGKPSSLLSQL---------HAQIIK-AYYEKVPSVATALLDAYVKTGNVVESARVFYS 464

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGA-L 349
           +P KD+++W+ ++TG AQ   + +A+EVF Q+++E   + PN+ T+ S++ A S   A +
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEG--VKPNEYTFSSVINACSSSAATV 522

Query: 350 RQGIKIHARVIK----NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
             G +IHA  +K    N LC    V++ L+ MY K G I+ A  +F +      V WN++
Sbjct: 523 EHGKQIHATAVKSGKSNALC----VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSM 578

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I+ +G HG   KAL  F+ M ++G+  D +TF+ +LTAC+H+GLV EG++YF++M +++ 
Sbjct: 579 ITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYH 638

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           I    +HY CMVDL+ RAG    A + I  MP     +IW  LL ACR+H N+ELG +A+
Sbjct: 639 IDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAA 698

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           ++L  +   +   YVL+SNI+A  G WE    VR L  +R +KK  G S IE+ N++  F
Sbjct: 699 EKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSF 758

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
             G+ +HP  + +Y +L  L+ K+K +GY PD ++V  DVEE+ KE IL+ HSERLAIA+
Sbjct: 759 LAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAY 818

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           G+I+ PP +PIQI KNLR+CGDCHN  + IS I ER +IVRDSNRFHHFK G+CSCG YW
Sbjct: 819 GLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/502 (30%), Positives = 254/502 (50%), Gaps = 15/502 (2%)

Query: 24  TSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           +SGL  D  T    LK C  L D   G+++HC  LK GF  DV V  SL+ MY +     
Sbjct: 97  SSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFE 156

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
             R +FD+M +++  SW +++SGY ++G   E + ++++M++EGV+ +  T A++L   A
Sbjct: 157 DGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               I  G+ +H  IVK+G EF  FV N LI MY K  M+  A  VFD M+ RD V+WN 
Sbjct: 217 DESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNI 276

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I  Y      +     F  M+ AG++       +   + +Q  +   ++ +H  +++ G
Sbjct: 277 MIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNG 336

Query: 261 W-FMEDVIIGNAVVDMYAKLGIINSACAVFE-GLPVKDVISWNTLITGYAQNGLASEAIE 318
           + F +D  I  A++  Y+K   ++ A  +F       +V++W  +I G+ QN    +A++
Sbjct: 337 YEFAQD--IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVD 394

Query: 319 VF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F QM  E   + PN  TY ++L A      L Q   +HA++IK        VAT L+D 
Sbjct: 395 LFCQMSREG--VRPNHFTYSTVL-AGKPSSLLSQ---LHAQIIKAYYEKVPSVATALLDA 448

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y K G + ++  +FY +P    V W+A+++        +KA+  F Q++ EGV+P+  TF
Sbjct: 449 YVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTF 508

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            S++ ACS S    E  +  H    + G    L     ++ ++ + G++  A        
Sbjct: 509 SSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE 568

Query: 498 VRPDASIWGALLGACRIHGNME 519
            R D   W +++     HG+ +
Sbjct: 569 ER-DIVSWNSMITGYGQHGDAK 589



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 214/431 (49%), Gaps = 13/431 (3%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD+ P++D   +N ++  + ++ +  EAL +  ++   G+ +D +T++  L VC  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             + + G  +H   +K G   ++ V  +L++MY K         +FD+M  ++VVSW S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 202 IAAYEQS--NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++ Y ++  ND +        MQ  G+ P+  T  ++   +A  +       VH  I++ 
Sbjct: 177 LSGYARNGLNDEVIH--LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F     + NA++ MY K  ++  A AVF+ + V+D ++WN +I GYA  G   E  ++
Sbjct: 235 G-FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQM 293

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M     +  ++  + + L   S    L    ++H  V+KN   F   + T L+  Y 
Sbjct: 294 FHRMRLAG-VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 380 KCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           KC  +D+A  LF     + + V W A+I     +    KA++ F QM  EGVRP+H T+ 
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYS 412

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           ++L A   S L+S  Q +  +++  +   P +     ++D + + G++  +     ++P 
Sbjct: 413 TVL-AGKPSSLLS--QLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPA 467

Query: 499 RPDASIWGALL 509
           + D   W A+L
Sbjct: 468 K-DIVAWSAML 477



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 13/312 (4%)

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +KH L  + F+ +  +   +     R+A ++FD+   +D+  +N ++  + ++N    A 
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  +  +G+  D LTL     +   L D    R VH   ++ G F+EDV +G ++VDM
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSG-FLEDVSVGTSLVDM 148

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K         +F+ + +K+V+SW +L++GYA+NGL  E I +   M +   +NPN  T
Sbjct: 149 YMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM-QMEGVNPNGFT 207

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           + ++L A +    +  G+++HA ++KN   F  FV   L+ MY K   + DA ++F  + 
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS---------- 445
              SV WN +I  +   G   +    F +M   GV+     F + L  CS          
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 446 -HSGLVSEGQRY 456
            H G+V  G  +
Sbjct: 328 LHCGVVKNGYEF 339


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/720 (38%), Positives = 407/720 (56%), Gaps = 73/720 (10%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+F L S +  D YT+P + ++C   +   DGK I   VLK+GF+ DV++  +L++MY  
Sbjct: 114 YKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAV 173

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G  + ARK+FD   V D  SWN+M++GY   GN  EA D+ D M               
Sbjct: 174 CGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMP-------------- 219

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
                                    E N+  SN++I ++ K G +  A ++F++M ++D+
Sbjct: 220 -------------------------ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDL 254

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSW+++I+ YEQ+     A   F  M   GI  D + ++S+ S  ++L      + VHG 
Sbjct: 255 VSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314

Query: 256 IMRRG--------------------------WFME----DVIIGNAVVDMYAKLGIINSA 285
           +++ G                           F E    D I  N+++  Y K G I  A
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKA 374

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
            A+F+ +P KD +SW+ +I+GYAQ    +E + +FQ M+      P++   VS++ A +H
Sbjct: 375 RALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ-IEGTKPDETILVSVISACTH 433

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           + AL QG  IHA + KN L  ++ + T L++MY K G ++DA+ +F  +       WNA+
Sbjct: 434 LAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNAL 493

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I    ++G  DK+L  F +M + GV P+ ITFV++L AC H GLV EG R+F+ M +E  
Sbjct: 494 ILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHK 553

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           I P++KHYGCMVDL GRAG L  A   I++MP+ PD S WGALLGAC+ +G+ E G    
Sbjct: 554 IGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIG 613

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
            +L E+  ++ G+ VL+SNIYA+ G W  V EVR + R  G+ KTPG S IE + +V  F
Sbjct: 614 RKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEF 673

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
             G++THP+ E I   L  +  K+K  GY PD   V  D++E+EKE  L  HSE+LAIAF
Sbjct: 674 LAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAF 733

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           G+I+  P +PI+I KNLR+C DCH   K IS+   REI+VRD +RFHHFK G CSC DYW
Sbjct: 734 GLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 127/529 (24%), Positives = 233/529 (44%), Gaps = 80/529 (15%)

Query: 24  TSGLRPDFYTFPPV---LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           T  L+P   T P +   L+ C+N+    +I   ++  GF  D F A+ LL         N
Sbjct: 17  TFTLKPTL-TLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFIN 75

Query: 81  VAR--KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
           + +  ++F  +   +    N M+ GY Q  +  +A+ +   M    V+ D  T   +   
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C+       G  I  +++K G + ++++ N LINMYA  G +  A +VFD     D+VSW
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           NS++A Y                                     + +   ++ V+  +  
Sbjct: 196 NSMLAGY-----------------------------------VLVGNVEEAKDVYDRMPE 220

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
           R     +VI  N+++ ++ K G +  AC +F  +  KD++SW+ LI+ Y QN +  EA+ 
Sbjct: 221 R-----NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALI 275

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK----------NCL---- 364
           +F+ M   N I  ++   +S+L A S +  +  G  +H  V+K          N L    
Sbjct: 276 LFKEM-NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMY 334

Query: 365 -----------------CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
                            C D      ++  Y KCG I+ A +LF  +P   +V W+A+IS
Sbjct: 335 SSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMIS 394

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +    +  + L  F++M  EG +PD    VS+++AC+H   + +G ++ H    + G+K
Sbjct: 395 GYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKNGLK 453

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++     +++++ + G +  A    + +  +   S W AL+    ++G
Sbjct: 454 INIILGTTLINMYMKLGCVEDALEVFKGLEEK-GVSTWNALILGLAMNG 501


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/678 (38%), Positives = 412/678 (60%), Gaps = 8/678 (1%)

Query: 33  TFPPVLKACRNLVDGKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPV 91
           T    L   ++L    ++H  V   G    + ++A  L   Y   G    A+ +FD + +
Sbjct: 27  TLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVL 86

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS--GL 149
           ++S  WN+MI GY  + +   AL +  +M   G   D  T   +L  C   D +L   G 
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACG--DLLLREMGR 144

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H  +V  GLE +++V N++++MY KFG +  A  VFD+M+ RD+ SWN++++ + ++ 
Sbjct: 145 KVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG 204

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME--DVI 267
           +   A   F  M++ G   D  TL++L S    + D +  + +HG+++R G      +  
Sbjct: 205 EARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF 264

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + N+++DMY     ++ A  +FEGL VKDV+SWN+LI+GY + G A +A+E+F  M    
Sbjct: 265 LMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVG 324

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + P++ T +S+L A + + ALR G  + + V+K     +V V T L+ MY  CG +  A
Sbjct: 325 AV-PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCA 383

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F ++P  +      +++  GIHG+G +A++ F +ML +GV PD   F ++L+ACSHS
Sbjct: 384 CRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHS 443

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV EG+  F+ M  ++ ++P   HY C+VDL GRAG+L  A+  I+NM ++P+  +W A
Sbjct: 444 GLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTA 503

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL ACR+H N++L  +++ +LFE++ + V  YV +SNIYA   +WE V+ VR+L   R L
Sbjct: 504 LLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRL 563

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           +K P +S +E+N  V  F+ G+ +H + + IY +L++L  ++K  GY PD S VL DVEE
Sbjct: 564 RKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEE 623

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
           + KE +L  HSERLA+AF +I++ P + I+I KNLRVCGDCH   K IS++T REII+RD
Sbjct: 624 EIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRD 683

Query: 688 SNRFHHFKDGICSCGDYW 705
             RFHHF+DG+CSCG YW
Sbjct: 684 ICRFHHFRDGLCSCGGYW 701



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 230/408 (56%), Gaps = 20/408 (4%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  G +PD +T+P VLKAC +L+    G+K+H  V+  G E DV+V  S+L MY 
Sbjct: 111 LYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYF 170

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           +FG    AR +FD M VRD  SWN M+SG+ ++G A  A ++  +MR +G   D  T+ +
Sbjct: 171 KFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLA 230

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLE---FNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +L  C    ++  G  IH Y+V++G      N F+ N++I+MY     +  A ++F+ + 
Sbjct: 231 LLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLR 290

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            +DVVSWNS+I+ YE+  D   A   F  M   G  PD +T++S+ +   Q++  R   +
Sbjct: 291 VKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT 350

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           V  ++++RG+ + +V++G A++ MYA  G +  AC VF+ +P K++ +   ++TG+  +G
Sbjct: 351 VQSYVVKRGYVV-NVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHG 409

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EAI +F  M     + P++G + ++L A SH G + +G +I  ++ +     D  V 
Sbjct: 410 RGREAISIFYEMLG-KGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTR-----DYSVE 463

Query: 372 ------TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
                 +CLVD+ G+ G +D+A ++   +  + +   W A++S   +H
Sbjct: 464 PRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLH 511


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/735 (36%), Positives = 416/735 (56%), Gaps = 68/735 (9%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP--- 90
           +  +LK CR   D KKIHC ++K     ++F+  +L+  Y +F     AR++FD MP   
Sbjct: 18  YCELLKHCR---DTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRN 74

Query: 91  ----------------------------VRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
                                        RD  SWN++IS Y   G  ++++   + M  
Sbjct: 75  LYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 123 EG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            G  +++ I ++++L + ++   +  GL +H ++VK G +  +FV + L++MY+K G++ 
Sbjct: 135 NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194

Query: 182 HALRVFDQM-------------------------------MERDVVSWNSIIAAYEQSND 210
            A + FD+M                                E+D +SW ++IA + Q+  
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M+   ++ D  T  S+ +    +   +  + VH +I+R   + +++ +G+
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD-YQDNIFVGS 313

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+VDMY K   I SA  VF  +  K+V+SW  ++ GY QNG + EA+++F  M+  N I 
Sbjct: 314 ALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQN-NGIE 372

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+  T  S++ + +++ +L +G + H R + + L   + V+  LV +YGKCG I+D+  L
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++     V W A++S +   G+ ++ L  F  ML  G +PD +TF+ +L+ACS +GLV
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLV 492

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +G + F  M +E  I P   HY CM+DLF RAG L  A  FI  MP  PDA  W +LL 
Sbjct: 493 QKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           +CR H NME+G  A++ L +++  N   Y+L+S+IYA  GKWE V  +R   RD+GL+K 
Sbjct: 553 SCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE 612

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG S I+  N+V IF   ++++P  ++IY EL  L  KM   GYVPD + VL DV++ EK
Sbjct: 613 PGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEK 672

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
             +L  HSE+LAIAFG+I  PP  PI++ KNLRVCGDCHN TK+IS+IT+REI+VRD+ R
Sbjct: 673 IKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAAR 732

Query: 691 FHHFKDGICSCGDYW 705
           FH FKDG CSCGD+W
Sbjct: 733 FHLFKDGRCSCGDFW 747



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ + + G   EA+D F +  L + L  D YTF  VL AC     L +GK++H  +++ 
Sbjct: 245 MIAGFTQNGLDREAIDLFREMRLEN-LEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 303

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ ++FV ++L+ MYC+      A  +F  M  ++  SW AM+ GY Q+G + EA+ I 
Sbjct: 304 DYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIF 363

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 364 CDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKC 423

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + R+F +M   D VSW ++++ Y Q          F +M   G +PD +T + + 
Sbjct: 424 GSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVL 483

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  ++    +    +   +++    +        ++D++++ G +  A      +P   D
Sbjct: 484 SACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPD 543

Query: 297 VISWNTLIT 305
            I W +L++
Sbjct: 544 AIGWASLLS 552


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 412/704 (58%), Gaps = 9/704 (1%)

Query: 5    YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEW 61
            Y + G   E++  F Q     G+ PD +    +LK    L    DG   H  ++KLGF  
Sbjct: 392  YAKVGEFEESLSLFVQMH-ELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGA 450

Query: 62   DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
               V  +L+  Y +  +   A  +F+ MP +D+ SWN++ISG   +G   EA+++   M 
Sbjct: 451  QCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMW 510

Query: 122  LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             +G  +D +T+ S+LP CA+S    +G ++H Y VK GL     ++N L++MY+     +
Sbjct: 511  TQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQ 570

Query: 182  HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
               ++F  M +++VVSW ++I +Y ++       G    M   GI+PD+  + S     A
Sbjct: 571  STNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFA 630

Query: 242  QLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
                 +  +SVHG+ +R G  ME ++ + NA+++MY K   +  A  +F+ +  KDVISW
Sbjct: 631  GDESLKQGKSVHGYTIRNG--MEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISW 688

Query: 301  NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            NTLI GY++N   +E+  +F  M    +  PN  T   ILPA + + +L +G +IHA  +
Sbjct: 689  NTLIGGYSRNNFPNESFSLFSDM--LLQFRPNAVTMTCILPAAASISSLERGREIHAYAL 746

Query: 361  KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            +     D + +  LVDMY KCG +  A  LF ++ + + + W  +I+ +G+HG G  A+ 
Sbjct: 747  RRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIA 806

Query: 421  FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             F QM   G+ PD  +F ++L AC HSGL +EG+R+F  MQ+E+ I+P LKHY C+VDL 
Sbjct: 807  LFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLL 866

Query: 481  GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
             R G L  A  FI++MP+ PD+SIW +LL  CRIH N++L    +D++F+++ EN GYYV
Sbjct: 867  SRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYV 926

Query: 541  LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            L++NIYA   +WE V ++++    RGL++  G+S IEV +KV +F   NR HP + +I +
Sbjct: 927  LLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAE 986

Query: 601  ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
             L ++  +M+  G+ P K + L   ++   +  L  HS +LA+AFG+++ P   PI++ K
Sbjct: 987  FLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTK 1046

Query: 661  NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
            N +VC  CH   KFIS++  REII+RDS+RFH F+ G CSC  Y
Sbjct: 1047 NSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 172/583 (29%), Positives = 276/583 (47%), Gaps = 23/583 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S Y + G   EAV  F Q     G+ PD +    VLK   +L    +G+ IH  + KL
Sbjct: 175 LMSAYAKAGDFQEAVSLFRQMQCC-GVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKL 233

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G      VA +L+ +Y R G    A ++FD M  RD+ SWN+MI G   +G    A+D+ 
Sbjct: 234 GLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLF 293

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL----------FVS 167
            +M  +G  +  +TV S+LP CA     L G  +H Y VK GL + L           + 
Sbjct: 294 SKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALG 353

Query: 168 NNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           + L+ MY K G M  A RVFD M  + +V  WN I+  Y +  +   +   F  M + GI
Sbjct: 354 SKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGI 413

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            PD   +  L   +  L+  R+    HG+I++ G F     + NA++  YAK  +I  A 
Sbjct: 414 APDEHAISCLLKCITCLSCARDGLVAHGYIVKLG-FGAQCAVCNALISFYAKSNMIGDAV 472

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSH 345
            VF  +P +D ISWN++I+G + NGL SEAIE+F +M  +  E++    T +S+LPA + 
Sbjct: 473 LVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSV--TLLSVLPACAQ 530

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
                 G  +H   +K  L  +  +A  L+DMY  C        +F  + + + V W A+
Sbjct: 531 SRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAM 590

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I+ +   G  DK     ++M+ +G+RPD     S L A +    + +G +  H      G
Sbjct: 591 ITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQG-KSVHGYTIRNG 649

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHGNMELGAVA 524
           ++  L     +++++ +  ++  A   I +     D   W  L+G   R +   E  ++ 
Sbjct: 650 MEKLLPVANALMEMYVKCRNVEEAR-LIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLF 708

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           SD L +     V    ++    A++   E   E+ + A  RG 
Sbjct: 709 SDMLLQFRPNAVTMTCILPAA-ASISSLERGREIHAYALRRGF 750



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 229/467 (49%), Gaps = 27/467 (5%)

Query: 4   VYVRCGRLSEAVDCFYQFTLT-SGLRPDFYTFPPVLKAC---RNLVDGKKIHC-----SV 54
           V +R  RL +A D      L  S    D  ++  V++ C   R+L   K+ H      S 
Sbjct: 69  VNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSA 128

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR--DSGSWNAMISGYCQSGNAVE 112
              G +  V +   L+  Y + G    AR +FD MP +  D   W +++S Y ++G+  E
Sbjct: 129 AATGGKGSV-LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQE 187

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           A+ +  +M+  GVS D   V+ +L   +   ++  G +IH  + K GL     V+N LI 
Sbjct: 188 AVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIA 247

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           +Y++ G M  A RVFD M  RD +SWNS+I     +    TA   F+ M   G +   +T
Sbjct: 248 VYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVT 307

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWF---------MEDVIIGNAVVDMYAKLGIIN 283
           ++S+    A L      ++VHG+ ++ G           ++D  +G+ +V MY K G + 
Sbjct: 308 VLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMA 367

Query: 284 SACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           SA  VF+ +  K +V  WN ++ GYA+ G   E++ +F  M E   I P++     +L  
Sbjct: 368 SARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELG-IAPDEHAISCLLKC 426

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATC--LVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            + +   R G+  H  ++K  L F    A C  L+  Y K   I DA+ +F ++PR  ++
Sbjct: 427 ITCLSCARDGLVAHGYIVK--LGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            WN++IS    +G   +A+  F +M  +G   D +T +S+L AC+ S
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 14/265 (5%)

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           ++G  +V  Y K G +  A  VF+G+P    DV  W +L++ YA+ G   EA+ +F+ M+
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
            C  ++P+      +L   S +G+L +G  IH  + K  L     VA  L+ +Y +CGR+
Sbjct: 197 CCG-VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRM 255

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           +DA  +F  +    ++ WN++I     +G    A++ F +M  +G     +T +S+L AC
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC 315

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD----------LFGRAGHLGMAHNFIQ 494
           +  G    G +  H    + G+   L      +D          ++ + G +  A     
Sbjct: 316 AGLGYGLIG-KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374

Query: 495 NMPVRPDASIWGALLGACRIHGNME 519
            M  + +  +W  ++G     G  E
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFE 399


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 417/709 (58%), Gaps = 10/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+  V  G   ++++ F Q   T   + D+ T   +L  C   +NL  G+ +H  V+K 
Sbjct: 232 IITASVHNGHCEKSLEYFSQMRYTHA-KTDYITISALLPVCGSAQNLRWGRGLHGMVVKS 290

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +V V  SLL MY + G +  A  +F  M  RD  SWN+M++ +  +GN   AL++L
Sbjct: 291 GLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELL 350

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM     + + +T  + L  C    N+ +  ++H +++  GL  NL + N L+ MY KF
Sbjct: 351 IEMLQTRKATNYVTFTTALSACY---NLETLKIVHAFVILLGLHHNLIIGNALVTMYGKF 407

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A RV   M +RD V+WN++I  +  + +P  A   F  +++ G+  + +T+V+L 
Sbjct: 408 GSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLL 467

Query: 238 SIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           S     +D  +    +H  I+  G+ +E   + ++++ MYA+ G +N++  +F+ L  K+
Sbjct: 468 SAFLSPDDLLDHGMPIHAHIVVAGFELE-TFVQSSLITMYAQCGDLNTSNYIFDVLANKN 526

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
             +WN +++  A  G   EA+++   M   + I+ +Q ++        ++  L +G ++H
Sbjct: 527 SSTWNAILSANAHYGPGEEALKLIIKMRN-DGIHLDQFSFSVAHAIIGNLTLLDEGQQLH 585

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + +IK+    + +V    +DMYGKCG IDD   +  Q    S   WN +IS    HG   
Sbjct: 586 SLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQ 645

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A   F +MLD G+RPDH+TFVSLL+ACSH GLV EG  YF  M  +FG+   ++H  C+
Sbjct: 646 QAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCI 705

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG L  A NFI  MPV P   +W +LL AC+IHGN+EL   A+DRLFE+DS + 
Sbjct: 706 IDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDD 765

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL SN+ A+  +W  V+ VR       +KK P  S +++ N+V  F  G++ HP+  
Sbjct: 766 SAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNA 825

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY +L  L   ++  GY+PD S+ LQD +E++KEH L +HSER+A+AFG+I+S   SP+
Sbjct: 826 EIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPL 885

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IFKNLRVCGDCH+  K +SQI  R+II+RD+ RFHHF  G CSC DYW
Sbjct: 886 RIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 254/484 (52%), Gaps = 11/484 (2%)

Query: 37  VLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           V+++C  LVD   G ++  SV+K G +  V VA SL+ M+        A  +FDDM  RD
Sbjct: 166 VIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERD 225

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           + SWN++I+    +G+  ++L+   +MR      D IT++++LPVC  + N+  G  +H 
Sbjct: 226 TISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHG 285

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            +VK GLE N+ V N+L++MY++ G    A  VF +M ERD++SWNS++A++  + +   
Sbjct: 286 MVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPR 345

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A      M Q     + +T  +  S    L      + VH F++  G    ++IIGNA+V
Sbjct: 346 ALELLIEMLQTRKATNYVTFTTALSACYNLETL---KIVHAFVILLG-LHHNLIIGNALV 401

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY K G + +A  V + +P +D ++WN LI G+A N   + AIE F ++ E   +  N 
Sbjct: 402 TMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLRE-EGVPVNY 460

Query: 334 GTYVSILPAY-SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T V++L A+ S    L  G+ IHA ++      + FV + L+ MY +CG ++ +  +F 
Sbjct: 461 ITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFD 520

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +   +S  WNAI+S +  +G G++AL    +M ++G+  D  +F        +  L+ E
Sbjct: 521 VLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDE 580

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           GQ+  H +  + G + +       +D++G+ G +      +     R   S W  L+ A 
Sbjct: 581 GQQ-LHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRS-WNILISAL 638

Query: 513 RIHG 516
             HG
Sbjct: 639 ARHG 642



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 146/526 (27%), Positives = 264/526 (50%), Gaps = 17/526 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGK-KIHCSVLK 56
           ++S +VR G   +A+  F+   L  G+RP  Y    ++ AC     + +G  ++H  V+K
Sbjct: 29  LMSGFVRVGWYQKAMQ-FFCHMLEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVIK 87

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DVFV  SLLH Y  FG       +F ++   +  SW +++ GY  +G   E + +
Sbjct: 88  CGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSV 147

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              +R +GV  +   +A+++  C    + + G  +   ++K GL+  + V+N+LI+M+  
Sbjct: 148 YRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGN 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A  VFD M ERD +SWNSII A   +     +  +F+ M+    + D +T+ +L
Sbjct: 208 CDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISAL 267

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
             +     + R  R +HG +++ G    +V + N+++ MY++ G    A  VF  +  +D
Sbjct: 268 LPVCGSAQNLRWGRGLHGMVVKSG-LESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERD 326

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +ISWN+++  +  NG    A+E+  +M++     N     YV+   A S    L     +
Sbjct: 327 LISWNSMMASHVDNGNYPRALELLIEMLQTRKATN-----YVTFTTALSACYNLETLKIV 381

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA VI   L  ++ +   LV MYGK G +  A  +   +P    V WNA+I  H  + + 
Sbjct: 382 HAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEP 441

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQR-YFHMMQEEFGIKPHLKHY 473
           + A+  F  + +EGV  ++IT V+LL+A  S   L+  G   + H++   F ++  ++  
Sbjct: 442 NAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQ-- 499

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             ++ ++ + G L  + N+I ++    ++S W A+L A   +G  E
Sbjct: 500 SSLITMYAQCGDLNTS-NYIFDVLANKNSSTWNAILSANAHYGPGE 544



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 212/441 (48%), Gaps = 8/441 (1%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +FG    A+ +FD MP R+  SWN ++SG+ + G   +A+     M   GV      
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 132 VASILPVCARSDNILSGLL-IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            AS++  C RS  +  G   +H +++K GL  ++FV  +L++ Y  FG +     VF ++
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            E ++VSW S++  Y  +         +  +++ G+  +   + ++      L D     
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            V G +++ G     V + N+++ M+     I  A  VF+ +  +D ISWN++IT    N
Sbjct: 181 QVLGSVIKSG-LDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHN 239

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   +++E F  M   +    +  T  ++LP       LR G  +H  V+K+ L  +V V
Sbjct: 240 GHCEKSLEYFSQMRYTHA-KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCV 298

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+ MY + G+ +DA  +F+++     + WN++++ H  +G   +AL    +ML    
Sbjct: 299 CNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK 358

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             +++TF + L+AC +     E  +  H      G+  +L     +V ++G+ G +  A 
Sbjct: 359 ATNYVTFTTALSACYN----LETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQ 414

Query: 491 NFIQNMPVRPDASIWGALLGA 511
              + MP R D   W AL+G 
Sbjct: 415 RVCKIMPDR-DEVTWNALIGG 434


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 406/710 (57%), Gaps = 35/710 (4%)

Query: 29  PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLF 86
           P  +    +L+ C ++   +++HC  +K G   +  +   ++   C   +G    AR+LF
Sbjct: 37  PPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLF 96

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D++P  +   WN MI GY +       + +  EM   GV  D  T   +     R   + 
Sbjct: 97  DEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE 156

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +H +++KHGL++N+FV   L+ MY   G +  A  VFD   + DV++WN II+AY 
Sbjct: 157 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +      +   F  M+   + P  +TLV + S  ++L D R  + VH ++ +      ++
Sbjct: 217 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV-KNCKVESNL 275

Query: 267 IIGNAVVDMYAKLGIINSACAVF-------------------------------EGLPVK 295
           ++ NA++DMYA  G ++SA  +F                               + +P K
Sbjct: 276 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 335

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D +SW  +I GY ++    EA+E+F+ M+  N + P++ T VS+L A +H+GAL  G  I
Sbjct: 336 DYVSWTAMIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWI 394

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              + +N +  D+FV   L+DMY KCG +D A S+F ++ +     W A+I    ++G G
Sbjct: 395 RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHG 454

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           +KAL+ F  ML   + PD IT++ +L+AC+H+GLV +G++YF  M  + GI+P++ HYGC
Sbjct: 455 EKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 514

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL  RAG L  A+  I+NMP++ ++ +WGALL  CR++   ++  +   ++ E++ +N
Sbjct: 515 LVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDN 574

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+ NIYA   +W  + E+R +  D+G+KK PG S IE+N +V  F  G+R+HP+ 
Sbjct: 575 GAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQT 634

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           + I  +L  +T  +K  GY PD S V  D+ E++KE+ +  HSE+LAIAFG+I+SPP   
Sbjct: 635 KNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVT 694

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLR+C DCHN  K +S++  RE+IVRD  RFHHFK G+CSC DYW
Sbjct: 695 IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 267/565 (47%), Gaps = 66/565 (11%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  G++PD YTFP + K       L  G+++H  VLK G +++VFV  +L+ MY 
Sbjct: 126 LYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYL 185

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  + AR +FD  P  D  +WN +IS Y + G   E+  +   M  + V    +T+  
Sbjct: 186 LCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVL 245

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C++  ++ +G  +H Y+    +E NL + N +I+MYA  G M  AL +F  M  RD
Sbjct: 246 VLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRD 305

Query: 195 VVSWNSIIA-------------------------------AYEQSNDPITAHGFFTTMQQ 223
           ++SW +I++                                Y +SN    A   F  MQ 
Sbjct: 306 IISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQA 365

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             ++PD  T+VS+ +  A L        +  +I  R     D+ + NA++DMY K G ++
Sbjct: 366 TNVKPDEFTMVSVLTACAHLGALELGEWIRTYI-DRNKIKNDLFVRNALIDMYFKCGDVD 424

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A ++F  +  +D  +W  +I G A NG   +A+++F  M + + I P++ TY+ +L A 
Sbjct: 425 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS-ILPDEITYIGVLSAC 483

Query: 344 SHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           +H G + +G K   R+  ++ +  ++    CLVD+  + GR+ +A  +   +P +++S+ 
Sbjct: 484 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIV 543

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYF 457
           W A+++   ++ + D A    +Q+L+  + PD    ++   ++  AC     + E     
Sbjct: 544 WGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACKRWNDLRE----L 597

Query: 458 HMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             M  + GIK   K  GC ++++ GR       H F+      P      A L   ++  
Sbjct: 598 RQMMMDKGIK---KXPGCSLIEMNGR------VHEFVAGDRSHPQTKNIDAKLD--KMTQ 646

Query: 517 NMELGAVASD------RLFEVDSEN 535
           +++L   + D       + E D EN
Sbjct: 647 DLKLAGYSPDISEVFLDIAEEDKEN 671



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y+R  R  EA++ F     T+ ++PD +T   VL AC +L     G+ I   + + 
Sbjct: 343 MIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN 401

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D+FV  +L+ MY + G  + A  +F +M  RD  +W AMI G   +G+  +ALD+ 
Sbjct: 402 KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMF 461

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M    +  D IT   +L  C  +  +  G    L +  +HG+E N+     L+++ A+
Sbjct: 462 SNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLAR 521

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD----LL 231
            G ++ A  V + M ++ + + W +++A      +   A       Q   ++PD     +
Sbjct: 522 AGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAE--MVVKQILELEPDNGAVYV 579

Query: 232 TLVSLTSIVAQLNDCRNSRSV 252
            L ++ +   + ND R  R +
Sbjct: 580 LLCNIYAACKRWNDLRELRQM 600


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/712 (38%), Positives = 424/712 (59%), Gaps = 16/712 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK--ACRNLVD-GKKIHCSVLKL 57
           +++ Y++ G LS+ ++ F++     G+ P+  TF  VL   A + +VD G+++H   +K 
Sbjct: 176 LLTGYIQDGALSDVMELFFRMR-AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VFV  SL++MY + GL   AR +F  M  RD  SWN +++G   +G+ +EAL + 
Sbjct: 235 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            + R     +   T A+++ +CA    +     +H  ++K G      V   L++ Y+K 
Sbjct: 295 HDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKA 354

Query: 178 GMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS- 235
           G + +AL +F  M   ++VVSW ++I    Q+ D   A   F+ M++ G+ P+  T  + 
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTI 414

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           LT+ VA L        +H  +++  +     I+G A++  Y+KL     A ++F+ +  K
Sbjct: 415 LTASVASLPP-----QIHAQVIKTNYECTS-IVGTALLASYSKLCNTEEALSIFKMIDQK 468

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGALRQGIK 354
           DV+SW+ ++T YAQ G +  A  +F  M   + + PN+ T  S++ A  S    +  G +
Sbjct: 469 DVVSWSAMLTCYAQAGDSDGATNIFIKMT-MHGLKPNEFTISSVIDACASPTAGVDLGRQ 527

Query: 355 IHARVIKNCLCFDVF-VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            HA  IK+  C D   V++ LV MY + G I+ A  +F +      V WN+++S +  HG
Sbjct: 528 FHAISIKH-RCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHG 586

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              KAL+ FRQM  EG+  D +TF+S++  C+H+GLV EGQRYF  M  ++GI P ++HY
Sbjct: 587 YSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHY 646

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            CMVDL+ RAG L  A + I+ M       +W  LLGAC++H N+ELG +A+++L  ++ 
Sbjct: 647 ACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEP 706

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
            +   YVL+SNIY+  GKW+  DEVR L   + +KK  G S I++ NKV  F   +++HP
Sbjct: 707 FDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHP 766

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
             E+IY +LR +T K+K  GY PD SF L +V E++KE +L  HSERLA+AFG+I++PP 
Sbjct: 767 LSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPG 826

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +P+ IFKNLRVCGDCH   K +S+I +REI++RD +RFHHF  G+CSCGD+W
Sbjct: 827 APLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 280/577 (48%), Gaps = 22/577 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFE- 60
           + R G + +A+D F       G R        VLK C ++ D   GK++H   ++ G + 
Sbjct: 77  HARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDR 136

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV V  SL+ MY ++      RK+F+ MP R+  +W ++++GY Q G   + +++   M
Sbjct: 137 GDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRM 196

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R EGV  + +T AS+L V A    +  G  +H   VK G    +FV N+L+NMYAK G++
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLV 256

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VF  M  RD+VSWN+++A    +   + A   F   + +       T  ++  + 
Sbjct: 257 EEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC 316

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVIS 299
           A +     +R +H  +++RG+     ++  A++D Y+K G + +A  +F  +   ++V+S
Sbjct: 317 ANIKQLGLARQLHSSVLKRGFHSYGNVM-TALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  +I G  QNG    A  +F  M E + + PN  TY +IL A   V +L    +IHA+V
Sbjct: 376 WTAMINGCIQNGDVPLAAALFSRMRE-DGVAPNDFTYSTILTA--SVASLPP--QIHAQV 430

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK        V T L+  Y K    ++A+S+F  + +   V W+A+++C+   G  D A 
Sbjct: 431 IKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGAT 490

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           N F +M   G++P+  T  S++ AC+      +  R FH +  +      L     +V +
Sbjct: 491 NIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSM 550

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-- 537
           + R G +  A    +    R D   W ++L     HG  +    A D   ++++E +   
Sbjct: 551 YARKGSIESAQCIFERQTDR-DLVSWNSMLSGYAQHGYSQ---KALDVFRQMEAEGIEMD 606

Query: 538 ----YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
                 V+M   +A + + EG     S+ARD G+  T
Sbjct: 607 GVTFLSVIMGCAHAGLVE-EGQRYFDSMARDYGITPT 642


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 431/710 (60%), Gaps = 9/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y   G+  E ++ F +  +T G  P+ YT    L AC        GK+IH SVLK 
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMT-GPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKS 313

Query: 58  G-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
                +++V  +L+ MY R G    A ++   M   D  +WN++I GY Q+    EAL+ 
Sbjct: 314 STHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEF 373

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M   G   D +++ SI+    R  N+L+G+ +H Y++KHG + NL V N LI+MY+K
Sbjct: 374 FSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             +  +  R F +M ++D++SW ++IA Y Q++  + A   F  + +  ++ D + L S+
Sbjct: 434 CNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSI 493

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               + L      + +H  I+R+G    D +I N +VD+Y K   +  A  VFE +  KD
Sbjct: 494 LRASSVLKSMLIVKEIHCHILRKGLL--DTVIQNELVDVYGKCRNMGYATRVFESIKGKD 551

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW ++I+  A NG  SEA+E+F+ M E   ++ +    + IL A + + AL +G +IH
Sbjct: 552 VVSWTSMISSSALNGNESEAVELFRRMVETG-LSADSVALLCILSAAASLSALNKGREIH 610

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +++   C +  +A  +VDMY  CG +  A ++F ++ R   + + ++I+ +G+HG G 
Sbjct: 611 CYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGK 670

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  F +M  E V PDHI+F++LL ACSH+GL+ EG+ +  +M+ E+ ++P  +HY C+
Sbjct: 671 AAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCL 730

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VD+ GRA  +  A  F++ M   P A +W ALL ACR H   E+G +A+ RL E++ +N 
Sbjct: 731 VDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNP 790

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G  VL+SN++A  G+W  V++VR+  +  G++K PG S IE++ KV  F   +++HP+ +
Sbjct: 791 GNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESK 850

Query: 597 KIYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +IY++L  +T K+ + +GYV D  FVL +V+E EK  +L  HSER+AIA+G++ +P ++ 
Sbjct: 851 EIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRAC 910

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++I KNLRVC DCH + K +S++  R+I++RD+NRFHHF+ G+CSCGD W
Sbjct: 911 LRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 153/542 (28%), Positives = 279/542 (51%), Gaps = 16/542 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  YV  G  + A+  ++   +  G+     +FP +LKAC  L D   G ++H  ++KL
Sbjct: 153 MIGAYVSNGEPASALALYWNMRV-EGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKL 211

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G+    F+  +L+ MY +    + AR+LFD    + D+  WN+++S Y  SG ++E L++
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLEL 271

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN-LFVSNNLINMYA 175
             EM + G + +  T+ S L  C        G  IH  ++K     + L+V N LI MY 
Sbjct: 272 FREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYT 331

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G M  A R+  QM   DVV+WNS+I  Y Q+     A  FF+ M  AG + D +++ S
Sbjct: 332 RCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTS 391

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + +   +L++      +H ++++ GW   ++ +GN ++DMY+K  +       F  +  K
Sbjct: 392 IIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D+ISW T+I GYAQN    EA+E+F+ + +   +  ++    SIL A S + ++    +I
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAK-KRMEIDEMILGSILRASSVLKSMLIVKEI 509

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  +++  L  D  +   LVD+YGKC  +  A  +F  +     V W ++IS   ++G  
Sbjct: 510 HCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNE 568

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYG 474
            +A+  FR+M++ G+  D +  + +L+A +    +++G+  + +++++ F ++  +    
Sbjct: 569 SEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA--V 626

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
            +VD++   G L  A      +  R     + +++ A  +HG    G  A +   ++  E
Sbjct: 627 AVVDMYACCGDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHG---CGKAAVELFDKMRHE 682

Query: 535 NV 536
           NV
Sbjct: 683 NV 684



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 259/517 (50%), Gaps = 19/517 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL--GFEWDV 63
           G L+EA   F +  ++    P    F  VL+ C   R +  G+++H  + K    FE D 
Sbjct: 62  GVLTEA---FQRLDVSENNSP-VEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD- 116

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+A  L+ MY + G  + A K+FD+MP R + +WN MI  Y  +G    AL +   MR+E
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           GV +   +  ++L  CA+  +I SG  +H  +VK G     F+ N L++MYAK   +  A
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 184 LRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
            R+FD   E+ D V WNSI+++Y  S   +     F  M   G  P+  T+VS  +    
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 296

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
            +  +  + +H  +++      ++ + NA++ MY + G +  A  +   +   DV++WN+
Sbjct: 297 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 356

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI GY QN +  EA+E F  M        ++ +  SI+ A   +  L  G+++HA VIK+
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGH-KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 415

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
               ++ V   L+DMY KC         F ++     + W  +I+ +  +    +AL  F
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 423 RQMLDEGVRPDHITFVSLLTACS--HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
           R +  + +  D +   S+L A S   S L+ + + + H++++   +   +++   +VD++
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVK-EIHCHILRKGL-LDTVIQNE--LVDVY 531

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           G+  ++G A    +++  + D   W +++ +  ++GN
Sbjct: 532 GKCRNMGYATRVFESIKGK-DVVSWTSMISSSALNGN 567


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/739 (37%), Positives = 417/739 (56%), Gaps = 59/739 (7%)

Query: 23  LTSGLRPDFYTFPP----------------VLKACRNLVDGKKIHCSVLKLGFEWDVFVA 66
           + S L P F  F P                +L  C ++   K+IH  ++K G    +F  
Sbjct: 1   MVSCLSPPFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQ 60

Query: 67  ASLLHMYCRFGLA---NVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMR 121
           + L+  +C    +   + A  LF  +  +      WN +I  +  +     +L +  +M 
Sbjct: 61  SKLIE-FCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQML 119

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G+  +  T  S+   CA+S        +H + +K  L  +  V  +LI+MY++ G +R
Sbjct: 120 HSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELR 179

Query: 182 HAL-------------------------------RVFDQMMERDVVSWNSIIAAYEQSND 210
           HA                                R+FD++  +DVVSWN++IA Y QS  
Sbjct: 180 HARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGR 239

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   FT MQ+A + P+  T+VS+ S    L      + +  ++  RG F +++ + N
Sbjct: 240 FEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRG-FGKNLQLVN 298

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+VDMY+K G I +A  +F+G+  KDVI WNT+I GY    L  EA+ +F++M   N + 
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLREN-VT 357

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL----CFDVFVATCLVDMYGKCGRIDD 386
           PN  T++++LPA + +GAL  G  +HA + KN        +V + T ++ MY KCG ++ 
Sbjct: 358 PNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEV 417

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +   S   WNA+IS   ++G  ++AL  F +M++EG +PD ITFV +L+AC+ 
Sbjct: 418 AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +G V  G RYF  M +++GI P L+HYGCM+DL  R+G    A   + NM + PD +IWG
Sbjct: 478 AGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWG 537

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           +LL ACRIHG +E G   ++RLFE++ EN G YVL+SNIYA  G+W+ V ++R+   D+G
Sbjct: 538 SLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKG 597

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +KK PG +SIE++  V  F  G++ HP+ E I+  L  +   ++  G+VPD S VL D++
Sbjct: 598 MKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMD 657

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+ KE  LT HSE+LAIAFG+IS+ P S I+I KNLRVC +CH+ TK IS+I  REII R
Sbjct: 658 EEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIAR 717

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHFKDG CSC D W
Sbjct: 718 DRNRFHHFKDGFCSCNDRW 736



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 169/369 (45%), Gaps = 15/369 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI+ YV+ GR  EA+ CF +    + + P+  T   VL AC   R+L  GK I   V   
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQ-EADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDR 288

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ MY + G    ARKLFD M  +D   WN MI GYC      EAL + 
Sbjct: 289 GFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF 348

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH----GLEFNLFVSNNLINM 173
           + M  E V+ + +T  ++LP CA    +  G  +H YI K+    G   N+ +  ++I M
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK G +  A +VF  M  R + SWN++I+    +     A G F  M   G QPD +T 
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITF 468

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           V + S   Q             + +       +     ++D+ A+ G  + A  +   + 
Sbjct: 469 VGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNME 528

Query: 294 VK-DVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYSHVGALR 350
           ++ D   W +L+     +G     +E  + + E   E+ P N G YV +   Y+  G   
Sbjct: 529 MEPDGAIWGSLLNACRIHG----QVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWD 584

Query: 351 QGIKIHARV 359
              KI  ++
Sbjct: 585 DVAKIRTKL 593


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/738 (36%), Positives = 420/738 (56%), Gaps = 34/738 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G   EA+  +    +  G+ PD +TFP +L AC  ++   +G ++H  V+K+
Sbjct: 92  LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+FVA SL+H Y   G  ++ RK+FD+M  R+  SW ++I+GY     A EA+ + 
Sbjct: 152 GLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLF 211

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GV  +P+T+   +  CA+  ++  G  +   + + G++ N  V N L++MY K 
Sbjct: 212 FEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKC 271

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M     +FD+  ++++V +N+I++ Y Q             M Q G +PD +T++S  
Sbjct: 272 GDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTI 331

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  AQL D    +S H ++ R G    D I  NA++DMY K G   +AC VF+ +  K V
Sbjct: 332 AACAQLGDLSVGKSSHAYVFRNGLERLDNI-SNAIIDMYMKCGKREAACKVFDSMSNKTV 390

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------------------------PNQ 333
           ++WN+LI G  ++G    A+ +F  M E N ++                         NQ
Sbjct: 391 VTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQ 450

Query: 334 G------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           G      T V I  A  ++GAL     I+  + KN +  D+ + T LVDM+ +CG   +A
Sbjct: 451 GIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNA 510

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           M +F  + +     W A I    + G    A+  F +ML + V+ D   FV+LLTA SH 
Sbjct: 511 MRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHG 570

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           G V +G++ F  M++  G+ P + HYGCMVDL GRAG L  A + +++MP++P+  IWG+
Sbjct: 571 GYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGS 630

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
            L ACR H N+E    A +++ ++  E VG +VL+SNIYA+ GKW  V  VR   +++G 
Sbjct: 631 FLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGF 690

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           +K  G SSIEV+  +  F +G+ +H +  +I   L+ +  ++  +GYVPD + VL DV+E
Sbjct: 691 QKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDE 750

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            EKEH+L+ HSE+LA+A+G+I++    PI++ KNLR+C DCH++ K +S++  REI VRD
Sbjct: 751 QEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRD 810

Query: 688 SNRFHHFKDGICSCGDYW 705
           +NR+H FK+G CSC D+W
Sbjct: 811 NNRYHFFKEGFCSCRDFW 828



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 260/529 (49%), Gaps = 39/529 (7%)

Query: 38  LKACRNLVDGKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS-G 95
           L+ C+ L++ K++HC++LK G F  +  +AA  + M     L        +D   + S  
Sbjct: 29  LQTCKTLIELKQLHCNMLKKGVFNINKLIAAC-VQMGTHESLNYALNAFKEDEGTKCSLY 87

Query: 96  SWNAMISGYCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
           + N +I GY  SG   EA+ I L  + + G+  D  T   +L  C++      G+ +H  
Sbjct: 88  TCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGV 147

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           +VK GL  +LFV+N+LI+ YA  G +    +VFD+M+ER+VVSW S+I  Y   N    A
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M + G++P+ +T+V   S  A+L D    + V   +   G    + ++ NA++D
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELG-VKSNTLVVNALLD 266

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY K G + +   +F+    K+++ +NT+++ Y Q+GLA E + V   M +  +  P++ 
Sbjct: 267 MYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ-RPDKV 325

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR----------- 383
           T +S + A + +G L  G   HA V +N L     ++  ++DMY KCG+           
Sbjct: 326 TMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSM 385

Query: 384 --------------------IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
                               ++ A+ +F ++P S+ V WN +I         ++A++  R
Sbjct: 386 SNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLR 445

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M ++G++ D +T V + +AC + G + +  ++ +   E+  I   ++    +VD+F R 
Sbjct: 446 EMQNQGIKGDRVTMVGIASACGYLGAL-DLAKWIYTYIEKNDIHIDMQLGTALVDMFSRC 504

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           G    A    +NM  R D S W A +    + GN +      D + + D
Sbjct: 505 GDPLNAMRVFENMEKR-DVSAWTAAIRVKAVEGNAKGAIELFDEMLKQD 552



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 138/272 (50%), Gaps = 7/272 (2%)

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS---RSVHGFIMRRGWFMEDVIIGNAVVDM 275
           TT+ Q+   P LL   +     + L  C+     + +H  ++++G F  + +I  A V M
Sbjct: 6   TTLHQSS-SPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIA-ACVQM 63

Query: 276 YAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
                +  +  A  E    K  + + NTLI GYA +GL  EAI ++  M     I P+  
Sbjct: 64  GTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNF 123

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T+  +L A S + A  +G+++H  V+K  L  D+FVA  L+  Y  CG++D    +F ++
Sbjct: 124 TFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEM 183

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
              + V W ++I+ + +     +A+  F +M++ GV P+ +T V  ++AC+    +  G+
Sbjct: 184 LERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGK 243

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           +  ++M  E G+K +      ++D++ + G +
Sbjct: 244 KVCNLMT-ELGVKSNTLVVNALLDMYMKCGDM 274


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/709 (37%), Positives = 418/709 (58%), Gaps = 9/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S  V+ GR  EA+  F     ++G   + YT   VL+ C  L     G+++H ++LK 
Sbjct: 238 VVSGCVQNGRTLEALALFRGMQ-SAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKC 296

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E ++   A LL MY ++G  + A ++F  +  +D  SWN+M+S Y Q+    EA+D  
Sbjct: 297 GSELNIQCNA-LLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFF 355

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G   D   V S+         + +G   H Y +K  L  +L V N L++MY K 
Sbjct: 356 GEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKC 415

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + +VF+ M  RD +SW +I+A + QS+    A      +Q+ GI  D + + S+ 
Sbjct: 416 GSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSIL 475

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L      + VH + +R G    D+I+ N ++D+Y + G  + +  +F+ +  KD+
Sbjct: 476 ETCCGLKSISLLKQVHCYAIRNGLL--DLILENRLIDIYGECGEFDHSLNLFQRVEKKDI 533

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW ++I     NG  + A+ +F  M++ N I P+    VSIL A + + +L +G ++H 
Sbjct: 534 VSWTSMINCCTNNGRLNGAVFLFTEMQKAN-IQPDSVALVSILVAIAGLSSLTKGKQVHG 592

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I+     +  V + LVDMY  CG ++ A+ +F +      V W A+I+  G+HG G +
Sbjct: 593 FLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQ 652

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F++ML  G+ PDH++F++LL ACSHS LV EG+ Y  +M  ++ +KP  +HY C+V
Sbjct: 653 AIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVV 712

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GR+G    A+ FI+ MP+ P +++W ALLGACR+H N  L  VA+++L E++ +N G
Sbjct: 713 DILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPG 772

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y+L+SN++A +GKW    E R+   +RGL+K P  S IE+ N +  F +G+  H   E 
Sbjct: 773 NYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEA 832

Query: 598 IYDELRNLTAKMKSL-GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           I+ +L  +T  ++   GYV D  FVL D  E+EK  +L  HSER+AIAFG+IS+ P  PI
Sbjct: 833 IHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPI 892

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVCGDCH +TK +S++ ER+I+VRD+NRFHHF  G CSC D+W
Sbjct: 893 RIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 281/527 (53%), Gaps = 19/527 (3%)

Query: 1   MISVYVRCGRLSEAVDCF--YQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVL 55
           ++  Y+  G   EA+  +   + +   G  PD  T   VLKAC    DG+   ++H   +
Sbjct: 132 LVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAV 191

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFD--DMPVRDSGSWNAMISGYCQSGNAVEA 113
           K+G +    VA +L+ MY + GL + A ++F+      RD  SWN+++SG  Q+G  +EA
Sbjct: 192 KVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEA 251

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L +   M+  G  M+  T  ++L VCA    +  G  +H  ++K G E N+   N L+ M
Sbjct: 252 LALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI-QCNALLVM 310

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK+G +  ALRVF Q+ E+D +SWNS+++ Y Q++    A  FF  M Q G QPD   +
Sbjct: 311 YAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACV 370

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           VSL+S +  L+   N R  H + +++     D+ +GN ++DMY K G I  +  VFE + 
Sbjct: 371 VSLSSALGHLSRLNNGREFHAYAIKQ-RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMG 429

Query: 294 VKDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQ 351
           ++D ISW T++  +AQ+   SEA+E + ++ +E   ++    G+ +        +  L+Q
Sbjct: 430 IRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQ 489

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
              +H   I+N L  D+ +   L+D+YG+CG  D +++LF +V +   V W ++I+C   
Sbjct: 490 ---VHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTN 545

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH-SGLVSEGQRYFHMMQEEFGIKPHL 470
           +G+ + A+  F +M    ++PD +  VS+L A +  S L    Q +  +++  F I+  +
Sbjct: 546 NGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV 605

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
                +VD++   G +  A    +    + D  +W A++ A  +HG+
Sbjct: 606 --VSSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGH 649



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 154/491 (31%), Positives = 249/491 (50%), Gaps = 25/491 (5%)

Query: 46  DGKKIHCSVLKLGF---EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +G+++H   +  G    + D F+A  L+ MY R G  + AR+LF+ MP R   SWNA++ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 103 GYCQSGNAVEALDILDEMRLE---GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
            Y  SG+A EA+ +   MR     G + D  T+AS+L  C    +   G  +H   VK G
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGF 217
           L+ +  V+N LI MYAK G++  ALRVF+ + +  RDV SWNS+++   Q+   + A   
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  MQ AG   +  T V++  + A+L      R +H  +++ G   E  I  NA++ MYA
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCG--SELNIQCNALLVMYA 312

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G ++SA  VF  +  KD ISWN++++ Y QN   +EAI+ F  M + +   P+    V
Sbjct: 313 KYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQ-HGFQPDHACVV 371

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+  A  H+  L  G + HA  IK  L  D+ V   L+DMY KCG I+ +  +F  +   
Sbjct: 372 SLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR 431

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + W  I++C     +  +AL    ++  EG+  D +   S+L  C        G +  
Sbjct: 432 DHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC-------GLKSI 484

Query: 458 HMMQEE--FGIKPHLKHY---GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
            ++++   + I+  L        ++D++G  G    + N  Q +  + D   W +++  C
Sbjct: 485 SLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCC 543

Query: 513 RIHGNMELGAV 523
             +G +  GAV
Sbjct: 544 TNNGRLN-GAV 553


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/709 (37%), Positives = 410/709 (57%), Gaps = 10/709 (1%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
            +I+     GR  E++  F+    T   + D+ T   +L AC   ++L  G+ +H  + K 
Sbjct: 423  IITASAHNGRFEESLGHFFWMRRTHP-KTDYITISALLPACGSAQHLKWGRGLHGLITKS 481

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G E +V V  SLL MY + G +  A  +F  MP RD  SWN+M++ + + G    A+ +L
Sbjct: 482  GLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLL 541

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             EM     +M+ +T  + L  C    N+    ++H +++   +  NL + N L+ MY KF
Sbjct: 542  VEMLKTRKAMNYVTFTTALSACY---NLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKF 598

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G+M  A +V   M ERDVV+WN++I  +    DP      F  M++ G+  + +T+V+L 
Sbjct: 599  GLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLL 658

Query: 238  SIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                  +   ++   +H  I+  G F  D  + ++++ MYA+ G +N++  +F+ L  K+
Sbjct: 659  GTCMSPDYLLKHGMPIHAHIVVAG-FELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKN 717

Query: 297  VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
              +WN + +  A  G   EA++    M   + ++ +Q ++   L    ++  L +G ++H
Sbjct: 718  SSTWNAIFSANAHYGPGEEALKFIARMRN-DGVDLDQFSFSVALATIGNLTVLDEGQQLH 776

Query: 357  ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            + +IK     D +V    +DMYGKCG IDD   +       S   WN +IS    HG   
Sbjct: 777  SWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFR 836

Query: 417  KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            +A   F +MLD G++PDH+TFVSLL+ACSH GLV EG  YF  M  EFG+   ++H  C+
Sbjct: 837  QATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCI 896

Query: 477  VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
            +DL GR+G L  A  FI  MPV P+  +W +LL AC++HGN+ELG  A+DRLFE++S + 
Sbjct: 897  IDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDD 956

Query: 537  GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
              YVL SN+ A+  +W  V+ VR     + LKK P  S I++ NKV  F  G++ HP+  
Sbjct: 957  SAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSA 1016

Query: 597  KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            +IY +L  L    +  G++PD S+ LQD +E++KEH L +HSER+A+AFG+I+S   SP+
Sbjct: 1017 QIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPL 1076

Query: 657  QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +IFKNLRVCGDCH+  K +S+I  R+I+VRDS RFHHF  G CSC DYW
Sbjct: 1077 RIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 260/525 (49%), Gaps = 21/525 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y   G   E ++  Y+    +GL     T   V++ C    D   G +I   V+K 
Sbjct: 321 LMVCYADNGHTKEVLN-IYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKS 379

Query: 58  GFEWD-VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G +   V VA SL+ M+  +     A ++F++M  RD+ SWN++I+    +G   E+L  
Sbjct: 380 GLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGH 439

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR      D IT++++LP C  + ++  G  +H  I K GLE N+ V N+L++MYA+
Sbjct: 440 FFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQ 499

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G    A  VF  M  RD++SWNS++A++ +  D   +H     ++    +   +  V+ 
Sbjct: 500 AGSSEDAELVFHTMPARDLISWNSMMASHVE--DGKYSHAILLLVEMLKTRK-AMNYVTF 556

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           T+ ++   +    + VH F++       ++IIGN +V MY K G+++ A  V + +P +D
Sbjct: 557 TTALSACYNLEKLKIVHAFVIHFA-VHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERD 615

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL-----PAYSHVGALRQ 351
           V++WN LI G+A +   +  I+ F +M     +  N  T V++L     P Y     L+ 
Sbjct: 616 VVTWNALIGGHADDKDPNATIQAFNLMRR-EGLLSNYITIVNLLGTCMSPDY----LLKH 670

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G+ IHA ++      D +V + L+ MY +CG ++ +  +F  +   +S  WNAI S +  
Sbjct: 671 GMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAH 730

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +G G++AL F  +M ++GV  D  +F   L    +  ++ EGQ+  H    + G +    
Sbjct: 731 YGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQ-LHSWIIKLGFELDEY 789

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                +D++G+ G +      +    +R   S W  L+ A   HG
Sbjct: 790 VLNATMDMYGKCGEIDDVFRILPIPKIRSKRS-WNILISALARHG 833



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 223/466 (47%), Gaps = 7/466 (1%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +H   +K   + + F   +L++MY +FG    A+ +FD M  R+  SWN MISG+ +
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLF 165
            G   +A+     M   GV+     +AS++  C RS  +  G   IH Y+VK GL  N+F
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +L++ Y   G +  A ++F+++ E ++VSW S++  Y  +         +  ++  G
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNG 345

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           +     T+ ++        D      + G +++ G     V + N+++ M+     +  A
Sbjct: 346 LICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEA 405

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF  +  +D ISWN++IT  A NG   E++  F  M   +    +  T  ++LPA   
Sbjct: 406 SRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP-KTDYITISALLPACGS 464

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
              L+ G  +H  + K+ L  +V V   L+ MY + G  +DA  +F+ +P    + WN++
Sbjct: 465 AQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSM 524

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ++ H   G+   A+    +ML      +++TF + L+AC +     E  +  H     F 
Sbjct: 525 MASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYN----LEKLKIVHAFVIHFA 580

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +  +L     +V ++G+ G +  A    + MP R D   W AL+G 
Sbjct: 581 VHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPER-DVVTWNALIGG 625



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N L T   +N   S  I  F      N  NP    ++     +S +     G  +HA  +
Sbjct: 121 NQLETCVKENEFLSYGIHTFIR----NHSNPQVSRFLQ--KGFSEISEGNVGKALHALCV 174

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K+ +  + F    LV+MY K G I  A  +F ++   +   WN +IS     G   KA+ 
Sbjct: 175 KDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQ 234

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
           FF  M + GV P      S++TAC  SG ++EG R  H    + G+  ++     ++  +
Sbjct: 235 FFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFY 294

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G  G +  A+   + +   P+   W +L+
Sbjct: 295 GTHGSVSEANKLFEEIE-EPNIVSWTSLM 322


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/717 (37%), Positives = 401/717 (55%), Gaps = 73/717 (10%)

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           +K  F W+     ++L  Y + G    A ++FD +PVRDS SW  +I GY Q G   +A+
Sbjct: 38  VKTTFSWN-----TILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAI 92

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            I  +M  + V     T+ ++L  CA + +   G  +H ++VK GL   + V+N+L+NMY
Sbjct: 93  KIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMY 152

Query: 175 AKFGMMRHALRVFDQMM-------------------------------ERDVVSWNSIIA 203
           AK G ++ A  VFD+M                                ERD+VSWNS+IA
Sbjct: 153 AKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIA 212

Query: 204 AYEQSNDPITAHGFFTT-MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
              Q      A  FF++ ++   ++PD  +L S  S  A L      + +HG+I+R   F
Sbjct: 213 GCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRT-MF 271

Query: 263 MEDVIIGNAVVDMYAK---------------------------------LGIINSACAVF 289
                +GNA++ MYAK                                 LG I  A  +F
Sbjct: 272 DASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIF 331

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             L   DV++W  +I GY QNGL ++AIEVF+ M       PN  T  ++L A S V +L
Sbjct: 332 NSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP-RPNSFTLAAMLSASSSVTSL 390

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISC 408
             G +IHA  I++       V   L  MY K G I+ A  +F  + ++  +V W ++I  
Sbjct: 391 NHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMA 450

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
              HG G++A+  F QML  G++PDHIT+V +L+AC+H GLV +G+ YF +M+    I P
Sbjct: 451 LAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDP 510

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            L HY CMVDLFGRAG L  A+ F++NMP+ PD   WG+LL +C+++ N++L  VA++RL
Sbjct: 511 TLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERL 570

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
             ++  N G Y  ++N+Y++ GKW+   ++R L + RG+KK  G S +++ NK  +F   
Sbjct: 571 LLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVE 630

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           +  HP+ ++IY  +  +  ++K +G+ PD   VL D+E + K+ IL  HSE+LAIAFGII
Sbjct: 631 DGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGII 690

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+P  + ++I KNLRVC DCHN  KFIS++ +REIIVRD+ RFHHFKDG CSC DYW
Sbjct: 691 STPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 178/429 (41%), Gaps = 81/429 (18%)

Query: 1   MISVYVRCGRL-------------------------------SEAVDCFYQFTLTSGLRP 29
           MIS+++ CGR+                               +EA+  F      + L+P
Sbjct: 179 MISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR--- 83
           D ++    L AC NL     GK+IH  +++  F+    V  +L+ MY + G   +AR   
Sbjct: 239 DRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRII 298

Query: 84  ---------------------KLFDDMPVR---------DSGSWNAMISGYCQSGNAVEA 113
                                KL D  P R         D  +W AMI GY Q+G   +A
Sbjct: 299 EQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDA 358

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           +++   M  EG   +  T+A++L   +   ++  G  IH   ++ G   +  V N L  M
Sbjct: 359 IEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTM 418

Query: 174 YAKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           YAK G +  A +VF+ + + RD VSW S+I A  Q      A   F  M   GI+PD +T
Sbjct: 419 YAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHIT 478

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVFE 290
            V + S           RS   F + +     D  + +   +VD++ + G++  A    E
Sbjct: 479 YVGVLSACTHGGLVEQGRSY--FDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVE 536

Query: 291 GLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +P++ DVI+W +L++    Y    LA  A E   ++E       N G Y ++   YS  
Sbjct: 537 NMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEP-----NNSGAYSALANVYSSC 591

Query: 347 GALRQGIKI 355
           G      KI
Sbjct: 592 GKWDDAAKI 600


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/682 (38%), Positives = 401/682 (58%), Gaps = 44/682 (6%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG---NAVEALD 115
           + W+  ++A     Y + G  +    LFD MP RD  SWN++ISGY   G    +V+A +
Sbjct: 76  YSWNTILSA-----YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 116 ILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           ++  ++ +G  +++ IT +++L + ++   +  G  IH ++VK G    +FV + L++MY
Sbjct: 131 LM--LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMY 188

Query: 175 AKFGMMRHALRVFD-------------------------------QMMERDVVSWNSIIA 203
           +K GM+  A +VFD                               +M ERD +SW S+I 
Sbjct: 189 SKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMIT 248

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + Q+     A   F  M+   +Q D  T  S+ +    +   +  + VH +I+R   + 
Sbjct: 249 GFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD-YK 307

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
           +++ + +A+VDMY K   I SA AVF+ +  K+V+SW  ++ GY QNG + EA++ F  M
Sbjct: 308 DNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDM 367

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           ++   I P+  T  S++ + +++ +L +G + HAR + + L   + V+  LV +YGKCG 
Sbjct: 368 QKYG-IEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGS 426

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I+D+  LF ++     V W A++S +   G+ ++ +  F  ML  G++PD +TF+ +L+A
Sbjct: 427 IEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSA 486

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS +GLV +G + F  M  E GI P   HY CM+DLF RAG +  A NFI  MP  PDA 
Sbjct: 487 CSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAI 546

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
            W  LL +CR +GNM++G  A++ L E+D  N   YVL+S++YA  GKWE V  +R   R
Sbjct: 547 SWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMR 606

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           D+GL+K PG S I+  N+V +F   ++++P  ++IY EL  L  KM   GYVPD + VL 
Sbjct: 607 DKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLH 666

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DV + EK  +L  HSE+LAIAFG++  PP  PI++ KNLRVC DCHN TK+IS+IT REI
Sbjct: 667 DVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREI 726

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           +VRD+ RFH FKDG CSCGD+W
Sbjct: 727 LVRDTARFHLFKDGTCSCGDFW 748



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 216/442 (48%), Gaps = 68/442 (15%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           ++L +C  + N      +H +I+K       F+ NNLI+ YAK G + +A +VFDQM   
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 194 DVVSWNSIIAAYEQ---------------SNDPITAHGFFTTMQQAGI------------ 226
           ++ SWN+I++AY +                 D ++ +   +     G+            
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 227 ------QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
                   + +T  +L  + ++    +  R +HG +++ G FM  V +G+ +VDMY+K+G
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFG-FMSYVFVGSPLVDMYSKMG 192

Query: 281 IINSACAVFEGLPVKDV-------------------------------ISWNTLITGYAQ 309
           +I+ A  VF+ LP K+V                               ISW ++ITG+ Q
Sbjct: 193 MISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ 252

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL  +AI++F+ M+  N +  +Q T+ S+L A   V AL++G ++HA +I+     ++F
Sbjct: 253 NGLDRDAIDIFREMKLEN-LQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIF 311

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           VA+ LVDMY KC  I  A ++F ++   + V W A++  +G +G  ++A+  F  M   G
Sbjct: 312 VASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG 371

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + PD  T  S++++C++   + EG + FH      G+   +     +V L+G+ G +  +
Sbjct: 372 IEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDS 430

Query: 490 HNFIQNMPVRPDASIWGALLGA 511
           H     +  + D   W AL+  
Sbjct: 431 HRLFNEISFK-DEVTWTALVSG 451



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 15/359 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ + + G   +A+D F +  L + L+ D YTF  VL AC     L +GK++H  +++ 
Sbjct: 246 MITGFTQNGLDRDAIDIFREMKLEN-LQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 304

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ ++FVA++L+ MYC+      A  +F  M  ++  SW AM+ GY Q+G + EA+   
Sbjct: 305 DYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTF 364

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 365 SDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKC 424

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + R+F+++  +D V+W ++++ Y Q        G F +M   G++PD +T + + 
Sbjct: 425 GSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVL 484

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  ++         +   ++     +        ++D++++ G I  A      +P   D
Sbjct: 485 SACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPD 544

Query: 297 VISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQ 351
            ISW TL++    Y    +   A E         E++P N  +YV +   Y+  G   +
Sbjct: 545 AISWATLLSSCRFYGNMDIGKWAAEFLM------ELDPHNTASYVLLSSVYAAKGKWEE 597



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y ++L          +   +H+ +IK     + F+   L+  Y K G I  A  +F Q+P
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
             +   WN I+S +   G+    ++    + D   R D +++ SL++  +  GL+ +  +
Sbjct: 72  HPNLYSWNTILSAYSKLGR----VSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVK 127

Query: 456 YFHMMQEEFG 465
            +++M +  G
Sbjct: 128 AYNLMLKNDG 137


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/658 (38%), Positives = 393/658 (59%), Gaps = 2/658 (0%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K IH  +L+L  + D ++   +L     FG  N ++ +F  +   +   WN MI G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               +A+ +   MR  G   +  T+  +L  CAR  ++  GL IH  +VK G + ++FV 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +L+++Y K      AL+VFD + +++VVSW +II  Y  S     A G F  + + G++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  +LV + +  A+L DC +   +  +I   G    +V +  +++DMY K G +  A  
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSG-MGRNVFVATSLLDMYVKCGNLERANL 271

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  +P KD++SW+T+I GYA NGL  +A+++F  M+  N + P+  T V +L A + +G
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN-LKPDCYTMVGVLSACATLG 330

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  GI   + + +N    +  + T L+DMY KCG +  A  +F  + R   V WNA++ 
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMV 390

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              ++G      + F  +   G+RPD  TF+ LL  C+H G V+EG+++F+ M+  F + 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLT 450

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++HYGCMVDL GRAG L  AH  I NMP++P+A +WGALLG C++H +  L      +
Sbjct: 451 PSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E++  N G YV +SNIY+   +WE  +++RS  +++ ++K    S IE++  V  F  
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+++H   EKIY +L  L  ++K++G+VP   FVL D+EE+EKEH L  HSE+LA+AFG+
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGL 630

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+SPP   I++ KNLRVCGDCH+  K IS+IT+REII+RD+NRFH F DG CSC DYW
Sbjct: 631 IASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 223/429 (51%), Gaps = 25/429 (5%)

Query: 16  DCF------YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVA 66
           DCF      Y      G  P+ +T P VLKAC   +D   G KIH  ++K G++ DVFV 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            SLL +Y +    + A K+FDD+P ++  SW A+I+GY  SG+  EA+    ++   G+ 
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D  ++  +L  CAR  +  SG  I  YI   G+  N+FV+ +L++MY K G +  A  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M E+D+VSW+++I  Y  +  P  A   F  MQ   ++PD  T+V + S  A L   
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                    +M R  F+ + ++G A++DMY+K G +  A  +F  +  KD + WN ++ G
Sbjct: 333 DLGIWASS-LMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVG 391

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            + NG A     +F ++E+ + I P++ T++ +L   +H G + +G +    + +     
Sbjct: 392 LSMNGHAKAVFSLFSLVEK-HGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR----- 445

Query: 367 DVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
            VF  T       C+VD+ G+ G +++A  L   +P + ++V W A++    +H     A
Sbjct: 446 -VFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 419 LNFFRQMLD 427
               +++++
Sbjct: 505 EQVLKKLIE 513


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/706 (39%), Positives = 412/706 (58%), Gaps = 9/706 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D  Y   + +G+RPD YTFP VL++C  + D   G+++H  VL+ 
Sbjct: 166 MVGGYGKAGLLEEALD-LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRF 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +V V  +L+ MY + G    ARK+FD M V D  SWNAMI+G+ ++G     L++ 
Sbjct: 225 GFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  + V  + +T+ S+        +I     +H   VK G   ++   N+LI MYA  
Sbjct: 285 LTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASL 344

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           GMM  A  VF +M  RD +SW ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 345 GMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASAL 404

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G FM  V++ NA+++MYAK   I+ A  VF+ +P KDV
Sbjct: 405 AACACLGSLDVGVKLHELAESKG-FMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDV 463

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+++I G+  N    EA+  F+ M    ++ PN  T+++ L A +  GALR G +IHA
Sbjct: 464 VSWSSMIAGFCFNHRNFEALYYFRHM--LADVKPNSVTFIAALAACAATGALRSGKEIHA 521

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  + ++ ++   L+D+Y KCG+   A + F        V WN +I+    HG G+ 
Sbjct: 522 HVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGET 581

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+FF QM+  G  PD +TFV+LL ACS  G+VSEG   FH M +++ I P+LKHY CMV
Sbjct: 582 ALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMV 641

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G L  A+NFI  MP+ PDA++WGALL  CRIH ++ELG +A+  + E++  + G
Sbjct: 642 DLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAG 701

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL+ ++YA+ G W+ +  VR   R++GL    G S +EV   V  F T + +HP+  +
Sbjct: 702 YHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIRE 761

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L  +  +MK+ G  P +S   +D  +  K+ I   HSERLA+AFG+I++ P + I 
Sbjct: 762 INTVLEGIYERMKASGCAPVESHSPED--KVLKDDIFCGHSERLAVAFGLINTTPGTSIS 819

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           + KN   C  CH   K IS I  R+IIVRDS + HHFKDG CSCGD
Sbjct: 820 VTKNQYTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 243/453 (53%), Gaps = 7/453 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A ++F  MP RD  SWN M+ GY ++G   EALD+   M   GV  
Sbjct: 134 AMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP 193

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    +   G  +H ++++ G    + V N L+ MYAK G +  A +VF
Sbjct: 194 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++ +       F TM Q  +QP+L+T+ S+T     L+D  
Sbjct: 254 DSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDIT 313

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +HG  ++RG F  DV   N+++ MYA LG++  A  VF  +  +D +SW  +I+GY
Sbjct: 314 FAKEMHGLAVKRG-FATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGY 372

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +M E N ++P+  T  S L A + +G+L  G+K+H           
Sbjct: 373 EKNGFPDKALEVYALM-EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSY 431

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V V   L++MY K  RID A+ +F  +P    V W+++I+    + +  +AL +FR ML 
Sbjct: 432 VVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA 491

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           + V+P+ +TF++ L AC+ +G +  G+  + H+++     + +L +   ++DL+ + G  
Sbjct: 492 D-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPN--ALIDLYVKCGQT 548

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           G A         + D   W  ++     HGN E
Sbjct: 549 GYAWAQFCAHGAK-DVVSWNIMIAGFVAHGNGE 580



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 200/420 (47%), Gaps = 8/420 (1%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           +   C  G   +AL +L+         D     ++  +C     +  GL    +      
Sbjct: 69  LRALCSHGQLAQALWLLES---SAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHA 125

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
            F L + N +++M  +FG   HA RVF +M ERDV SWN ++  Y ++     A   +  
Sbjct: 126 WFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHR 185

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M  AG++PD+ T   +      + D R  R VH  ++R G F E+V + NA++ MYAK G
Sbjct: 186 MMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFG-FAEEVDVLNALMTMYAKCG 244

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            + +A  VF+ + V D ISWN +I G+ +NG  +  +E+F  M + +E+ PN  T  S+ 
Sbjct: 245 DVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQ-DEVQPNLMTITSVT 303

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A   +  +    ++H   +K     DV     L+ MY   G +  A ++F ++    ++
Sbjct: 304 VASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAM 363

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W A+IS +  +G  DKAL  +  M    V PD IT  S L AC+  G +  G +  H +
Sbjct: 364 SWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHEL 422

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHGNME 519
            E  G   ++     +++++ ++  +  A    + MP + D   W +++ G C  H N E
Sbjct: 423 AESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHRNFE 481


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/646 (40%), Positives = 366/646 (56%), Gaps = 80/646 (12%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           EWDV    +L+  Y ++G  + AR+LFD MP RD  SWN M+SGY + G+ VEA  + D 
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 249

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
                    P+                                ++F    +++ YA+ GM
Sbjct: 250 A--------PVR-------------------------------DVFTWTAVVSGYAQNGM 270

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVFD M ER+ VSWN+++AAY Q      A   F  M                  
Sbjct: 271 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP----------------- 313

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                 CRN  S         W        N ++  YA+ G++  A AVF+ +P KD +S
Sbjct: 314 ------CRNVAS---------W--------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  ++  Y+Q G + E +++F  M  C E   N+  +  +L   + + AL  G+++H R+
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGRL 409

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           I+       FV   L+ MY KCG ++DA + F ++     V WN +I+ +  HG G +AL
Sbjct: 410 IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEAL 469

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M     +PD IT V +L ACSHSGLV +G  YF+ M  +FG+    +HY CM+DL
Sbjct: 470 EIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDL 529

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  AH+ +++MP  PD+++WGALLGA RIH N ELG  A++++FE++ EN G Y
Sbjct: 530 LGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMY 589

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA+ GKW    ++R +  +RG+KK PG+S IEV NKV  F  G+  HP+ EKIY
Sbjct: 590 VLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIY 649

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L +L  +MK  GYV     VL DVEE+EKEH+L  HSE+LA+A+GI++ PP  PI++ 
Sbjct: 650 AFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVI 709

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCHN  K+IS I  R I++RDSNRFHHF+ G CSCGDYW
Sbjct: 710 KNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 45/331 (13%)

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           LE  +  SN  I  + + G +  A R+F  M  R   ++N+++A Y  +     A   F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 220 TMQQAGIQPD---LLTLVSLTSIVAQLNDCR------------------NSRSVHGFI-M 257
            +     +PD     TL+   ++ + L D R                  +S + HG + +
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 258 RRGWF----MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            R +F     +D +  N ++  Y + G +  A  +F      DVISWN L++GY Q G  
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKM 209

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVAT 372
           SEA E+F  M   + ++ N    VS        G  R+G  + AR + +     DVF  T
Sbjct: 210 SEARELFDRMPGRDVVSWN--IMVS--------GYARRGDMVEARRLFDAAPVRDVFTWT 259

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            +V  Y + G +++A  +F  +P  ++V WNA+++ +      D+A   F  M    V  
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV-- 317

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
              ++ ++LT  + +G++ E +  F  M ++
Sbjct: 318 --ASWNTMLTGYAQAGMLEEAKAVFDTMPQK 346



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ Y + G   E +  F +     G   +   F  VL  C ++     G ++H  +++ 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMG-RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA 412

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+    FV  +LL MY + G    AR  F++M  RD  SWN MI+GY + G   EAL+I 
Sbjct: 413 GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF 472

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
           D MR      D IT+  +L  C+ S  +  G + + Y + H  G+         +I++  
Sbjct: 473 DMMRTTSTKPDDITLVGVLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLG 531

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL- 233
           + G +  A  +   M  E D   W +++ A     +P         + +  ++P+   + 
Sbjct: 532 RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPENAGMY 589

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           V L++I A     R++R +   +  RG
Sbjct: 590 VLLSNIYASSGKWRDARKMRVMMEERG 616



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 113/261 (43%), Gaps = 21/261 (8%)

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    +VI  N  +  + + G +  A  +F  +P +   ++N ++ GY+ NG    A  +
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMY 378
           F+ +       P+  +Y ++L A +   +L     +   + +++ + ++V +++     +
Sbjct: 92  FRAIPR-----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----H 141

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
              G +  A   F   P   +V WN +++ +  +G+ ++A    R + +     D I++ 
Sbjct: 142 ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDVISWN 197

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           +L++     G +SE +  F  M         +  +  MV  + R G +  A       PV
Sbjct: 198 ALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDAAPV 252

Query: 499 RPDASIWGALLGACRIHGNME 519
           R D   W A++     +G +E
Sbjct: 253 R-DVFTWTAVVSGYAQNGMLE 272


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/662 (38%), Positives = 395/662 (59%), Gaps = 5/662 (0%)

Query: 45  VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           +DG  +H  ++K GF     V  +L+  Y +      A  +FD+MP RD  SWN++I G 
Sbjct: 1   MDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGC 60

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
             +G   +A+++   M LEG  +D  T+ S++P C +S     G ++H Y V+ GL    
Sbjct: 61  ASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISET 120

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            + N L++MY+     R   ++F  M +++VVSW ++I +Y ++       G F  M   
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIIN 283
           GI+PD+  + S     A     ++ +SVHG+ +R G  +E+V+ + NA+++MY K G + 
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNG--IEEVLPVANALMEMYVKCGYME 238

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  +F+ +  KD ISWNTLI GY+++ LA+EA  +F  M    ++ PN  T   ILPA 
Sbjct: 239 EARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM--LLQLRPNAVTMACILPAA 296

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + + +L +G ++HA  ++     D FVA  LVDMY KCG +  A  LF  +   + + W 
Sbjct: 297 ASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWT 356

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
            +I+ +G+HG+G  A+  F QM   G++PD  +F ++L ACSHSGL  EG R+F+ M+ E
Sbjct: 357 IMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNE 416

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
             I+P LKHY CMVDL    G+L  A+ FI+ MP+ PD+SIW +LL  CRIH N++L   
Sbjct: 417 HRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEK 476

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
            ++ +FE++ EN GYYVL++NIYA   +WE V ++++    RGL++  G S IEV  K  
Sbjct: 477 VAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAH 536

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
           IF+  NR HP+  +I + L ++  +M+  G+ P K + L   ++   +  L  HS +LA+
Sbjct: 537 IFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAV 596

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG+++     PI++ KN RVC  CH   KFIS++  REII+RDSNRFHHF++G CSC  
Sbjct: 597 AFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRG 656

Query: 704 YW 705
           YW
Sbjct: 657 YW 658



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 168/360 (46%), Gaps = 32/360 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI+ Y R G   +    F +  L  G+RPD +     L A     +L  GK +H   ++ 
Sbjct: 157 MITSYTRAGHFDKVAGLFQEMGL-EGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN 215

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E  + VA +L+ MY + G    AR +FD +  +D+ SWN +I GY +S  A EA  + 
Sbjct: 216 GIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLF 275

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM L+ +  + +T+A ILP  A   ++  G  +H Y V+ G   + FV+N L++MY K 
Sbjct: 276 NEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKC 334

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD +  ++++SW  +IA Y        A   F  M+ +GIQPD        
Sbjct: 335 GALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPD------AG 388

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIINSAC 286
           S  A L  C      H  +   GW   + +               +VD+    G +  A 
Sbjct: 389 SFSAILYACS-----HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAY 443

Query: 287 AVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYS 344
              E +P++ D   W +L+ G   +     A +V +M+    E+ P N G YV +   Y+
Sbjct: 444 EFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMV---FELEPENTGYYVLLANIYA 500


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/554 (44%), Positives = 353/554 (63%), Gaps = 2/554 (0%)

Query: 152  HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
            H  I  +GL+++  +      MY  F  +  A  VF+ +       WN +I  +      
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 212  ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
            +++   ++ M + G++PD           A L+D +  + +H  ++  G    D+ +  A
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGC-SNDLFVDAA 858

Query: 272  VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            +VDMYAK G I +A  VF+ + V+D++SW ++I+GYA NG  SE +  F +M     I P
Sbjct: 859  LVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-P 917

Query: 332  NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
            N+ + +S+L A  ++GALR+G   H+ VI+    FD+ VAT ++DMY KCG +D A  LF
Sbjct: 918  NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977

Query: 392  YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +      V W+A+I+ +GIHG G KA++ F QM+  GVRP H+TF  +L+ACSHSGL+ 
Sbjct: 978  DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 452  EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            EG+ YF +M EEF I   L +Y CMVDL GRAG L  A + I+NMPV PDASIWG+LLGA
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 512  CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
            CRIH N++L    +D LF +D  + GY+VL+SNIYA   +W  V++VR +   RG  K  
Sbjct: 1098 CRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQ 1157

Query: 572  GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
            G+S +E +N+V  F  G+R+HP++EK+Y +L  L A MK LGYVP   FVL D+EE+ KE
Sbjct: 1158 GFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKE 1217

Query: 632  HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
              L+ HSERLAIAFG+I++ P + ++I KNLR+CGDCHN  K IS+I  R I+VRD +RF
Sbjct: 1218 AALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRF 1277

Query: 692  HHFKDGICSCGDYW 705
            H F+DG+CSCGDYW
Sbjct: 1278 HRFEDGVCSCGDYW 1291



 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 375/629 (59%), Gaps = 12/629 (1%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLK---LG 58
           Y R  +  E +  F+    T+G  PD +T P  LKAC   R L  GK IH    K   +G
Sbjct: 77  YCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG 136

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              D+FV ++L+ +Y + G    A K+F++    D+  W +M++GY Q+ +  EAL +  
Sbjct: 137 S--DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFS 194

Query: 119 EM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +M  ++ V +DP+T+ S++  CA+  N+ +G  +H  +++   + +L + N+L+N+YAK 
Sbjct: 195 QMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKT 254

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  + A  +F +M E+DV+SW+++IA Y  +     A   F  M +   +P+ +T+VS  
Sbjct: 255 GCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL 314

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A   +    + +H   + +G F  D  +  A++DMY K    + A  +F+ LP KDV
Sbjct: 315 QACAVSRNLEEGKKIHKIAVWKG-FELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  L++GYAQNG+A +++ VF+ M   + I P+    V IL A S +G  +Q + +H 
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLS-DGIQPDAVAVVKILAASSELGIFQQALCLHG 432

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V+++    +VFV   L+++Y KCG + DA+ LF  +     V W+++I+ +GIHG+G +
Sbjct: 433 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 492

Query: 418 ALNFFRQML-DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           AL  F QM+ +  VRP+++TF+S+L+ACSH+GLV EG + F  M  ++ ++P  +H+G M
Sbjct: 493 ALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIM 552

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GR G LG A + I  MP+     +WGALLGACRIH N+E+G  A+  LF +D  + 
Sbjct: 553 VDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHA 612

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYY+L+SNIYA  GKW+ V E+R+  ++RGLKK  G S +EV   V  F   +R HP  +
Sbjct: 613 GYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQ 672

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           KIY+ LR L A+M    Y+PD  F+L D 
Sbjct: 673 KIYELLRKLEAQMGKEVYIPDLDFLLHDT 701



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 249/483 (51%), Gaps = 7/483 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           + +AC N     ++H  V K G   D F A  L  +Y +      ARK+FD+ P  +   
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHL 69

Query: 97  WNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN+ +  YC+     E L +   M    G + D  T+   L  CA    +  G +IH + 
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 156 VKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            K+  +  ++FV + L+ +Y+K G M  AL+VF++    D V W S++  Y+Q+NDP  A
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 215 HGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
              F+ M     +  D +TLVS+ S  AQL + +    VHG ++RR  F  D+ + N+++
Sbjct: 190 LALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRRE-FDGDLPLVNSLL 248

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           ++YAK G    A  +F  +P KDVISW+T+I  YA N  A+EA+ +F  M E     PN 
Sbjct: 249 NLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE-KRFEPNS 307

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T VS L A +    L +G KIH   +      D  V+T L+DMY KC   D+A+ LF +
Sbjct: 308 VTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQR 367

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +P+   V W A++S +  +G   K++  FR ML +G++PD +  V +L A S  G+  + 
Sbjct: 368 LPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA 427

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
               H      G   ++     +++L+ + G LG A    + M VR D  IW +++ A  
Sbjct: 428 -LCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYG 485

Query: 514 IHG 516
           IHG
Sbjct: 486 IHG 488



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 193/374 (51%), Gaps = 6/374 (1%)

Query: 48   KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
            KK H  +   G ++D  +      MY  F   + A  +F+D+P   S  WN MI G+   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 108  GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
            G  + +L++  +M  +G+  D       L  CA   ++  G +IH ++V  G   +LFV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 168  NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
              L++MYAK G +  A  VFD+M  RD+VSW S+I+ Y  +       GFF  M+ +G+ 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 228  PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            P+ ++++S+      L   R     H ++++ G F  D+++  A++DMY+K G ++ A  
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTG-FEFDILVATAIMDMYSKCGSLDLARC 975

Query: 288  VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            +F+    KD++ W+ +I  Y  +G   +AI++F  M +   + P+  T+  +L A SH G
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG-VRPSHVTFTCVLSACSHSG 1034

Query: 348  ALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
             L +G K++ +++         ++   C+VD+ G+ G++ +A+ L   +P    +  W +
Sbjct: 1035 LLEEG-KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093

Query: 405  IISCHGIHGQGDKA 418
            ++    IH   D A
Sbjct: 1094 LLGACRIHNNLDLA 1107



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 160/314 (50%), Gaps = 17/314 (5%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
            MI  +   GR   +++  Y   +  GL+PD + FP  LK+C  L D   GK IH  ++  
Sbjct: 789  MIRGFATDGRFLSSLE-LYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCC 847

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G   D+FV A+L+ MY + G    AR +FD M VRD  SW +MISGY  +G   E L   
Sbjct: 848  GCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFF 907

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            D MR  GV  + +++ S+L  C     +  G   H Y+++ G EF++ V+  +++MY+K 
Sbjct: 908  DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKC 967

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  A  +FD+   +D+V W+++IA+Y        A   F  M +AG++P  +T   + 
Sbjct: 968  GSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCV- 1026

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV------VDMYAKLGIINSACAVFEG 291
                 L+ C +S  +    M      E+ +I   +      VD+  + G ++ A  + E 
Sbjct: 1027 -----LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIEN 1081

Query: 292  LPVK-DVISWNTLI 304
            +PV+ D   W +L+
Sbjct: 1082 MPVEPDASIWGSLL 1095



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 133/570 (23%), Positives = 236/570 (41%), Gaps = 66/570 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKL 57
           ++S Y + G   +++  F    L+ G++PD      +L A   L   ++   +H  V++ 
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNM-LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS 437

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +VFV ASL+ +Y + G    A KLF  M VRD   W++MI+ Y   G   EAL+I 
Sbjct: 438 GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIF 497

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLE-FNLFVSNNL 170
           D+M +   V  + +T  SIL  C+ +  +  GL     ++H Y ++   E F +     +
Sbjct: 498 DQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGI-----M 552

Query: 171 INMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYE-----QSNDPITAHGFFTTMQQA 224
           +++  + G +  A+ + ++M +      W +++ A       +  +    + F+     A
Sbjct: 553 VDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHA 612

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G        + L++I A      N   +   I  RG      + G ++V++    G ++S
Sbjct: 613 GY------YILLSNIYAVDGKWDNVAELRTRIKERGL---KKMFGQSMVEVR---GGVHS 660

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNG----------LASEAIEVFQMMEECNEINPNQG 334
             A     P    I +  L    AQ G          L  +   V Q  +    I   + 
Sbjct: 661 FLASDRFHPDSQKI-YELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQFWQR---IKATES 716

Query: 335 TYVSI--LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            Y +I   P    +       K HA++    L +D  + T    MY    RID A  +F 
Sbjct: 717 KYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFE 776

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +P   S  WN +I      G+   +L  + +M+++G++PD   F   L +C+    +  
Sbjct: 777 DIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQR 836

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G +  H      G    L     +VD++ + G +  A      M VR D   W +++   
Sbjct: 837 G-KVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR-DLVSWTSMISGY 894

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLM 542
             +G               +SE +G++ LM
Sbjct: 895 AHNG--------------YNSETLGFFDLM 910


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 412/706 (58%), Gaps = 9/706 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D  Y   + +G+RPD YTFP VL++C  + D   G+++H  VL+ 
Sbjct: 160 MVGGYGKSGLLDEALD-LYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRF 218

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +V V  +L+ MY + G    ARK+FD M V D  SWNAMI+G+ ++G     L++ 
Sbjct: 219 GFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELF 278

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  + V  + +T+ S+        ++     +H   VK G   ++   N+LI MYA  
Sbjct: 279 LTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASL 338

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           GMMR A  VF +M  RD ++W ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 339 GMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASAL 398

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G F+  +++ NA+++MYAK   I+ A  VF+ +  KDV
Sbjct: 399 AACACLGSLDVGVKLHELAESKG-FISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDV 457

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+++I G+  N    EA+  F+ M    ++ PN  T+++ L A +  GALR G +IHA
Sbjct: 458 VSWSSMIAGFCFNHRNFEALYYFRHM--LADVKPNSVTFIAALAACAATGALRSGKEIHA 515

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  + ++ ++   L+D+Y KCG+   A + F        V WN +I+    HG GD 
Sbjct: 516 HVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDT 575

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+FF QM+  G  PD +TFV+LL ACS  G+VSEG   FH M E++ I P+LKHY CMV
Sbjct: 576 ALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMV 635

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  RAG L  A+NFI  MP+ PDA++WGALL  CRIH ++ELG +A+  +  ++  + G
Sbjct: 636 DLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAG 695

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL+ ++YA+   W+ +  VR   R++GL    G S +EV   V  F T + +HP+  +
Sbjct: 696 YHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIRE 755

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L  +  +MK+ GY P +S   +D  E  K+ I   HSERLA+AFG+I++ P + I 
Sbjct: 756 INTVLEGIYERMKASGYAPVESHCPED--EVLKDDIFCGHSERLAVAFGLINTTPGTSIS 813

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           + KN   C  CH   K IS I  R+IIVRDS + HHFKDG CSCGD
Sbjct: 814 VTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 227/422 (53%), Gaps = 4/422 (0%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A ++F  MP RD  SWN M+ GY +SG   EALD+   M   GV  
Sbjct: 128 AMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRP 187

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    +   G  +H ++++ G    + V N L+ MYAK G +  A +VF
Sbjct: 188 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVF 247

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++ +       F TM    +QP+L+T+ S+T     L+D  
Sbjct: 248 DSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVT 307

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +HG  ++RG F  DV   N+++ MYA LG++  A  VF  +  +D ++W  +I+GY
Sbjct: 308 FAKEMHGLAVKRG-FAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGY 366

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +M E N ++P+  T  S L A + +G+L  G+K+H           
Sbjct: 367 EKNGFPDKALEVYALM-EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISY 425

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + V   +++MY K  RID A+ +F  +     V W+++I+    + +  +AL +FR ML 
Sbjct: 426 IVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA 485

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           + V+P+ +TF++ L AC+ +G +  G+   H      GI+        ++DL+ + G  G
Sbjct: 486 D-VKPNSVTFIAALAACAATGALRSGKE-IHAHVLRCGIEYEGYLPNALIDLYVKCGQTG 543

Query: 488 MA 489
            A
Sbjct: 544 YA 545



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 198/420 (47%), Gaps = 8/420 (1%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           +   C  G   +AL +L+         D     ++  +C     +  GL    +      
Sbjct: 63  LRALCSHGQLAQALWLLES---SAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHA 119

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
            F L + N +++M  +FG   HA RVF +M ERDV SWN ++  Y +S     A   +  
Sbjct: 120 WFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHR 179

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M  AG++PD+ T   +      + D R  R VH  ++R G F E+V + NA++ MYAK G
Sbjct: 180 MMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFG-FGEEVDVLNALMTMYAKCG 238

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            + +A  VF+ + V D ISWN +I G+ +NG  +  +E+F  M   +E+ PN  T  S+ 
Sbjct: 239 DVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLH-DEVQPNLMTITSVT 297

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A   +  +    ++H   +K     DV     L+ MY   G +  A ++F ++    ++
Sbjct: 298 VASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAM 357

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W A+IS +  +G  DKAL  +  M    V PD IT  S L AC+  G +  G +  H +
Sbjct: 358 TWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHEL 416

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHGNME 519
            E  G   ++     +++++ ++  +  A    + M  + D   W +++ G C  H N E
Sbjct: 417 AESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRNFE 475


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/708 (38%), Positives = 414/708 (58%), Gaps = 16/708 (2%)

Query: 9   GRLSEAVDCFYQ-----FTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSV-LKLGF 59
           G L EA+D F Q       L S  R +      +L+AC    D   G+++H  V     F
Sbjct: 81  GNLKEALD-FLQRESDDVVLDSAQRSE--AMGVLLQACGQRKDIEVGRRLHEMVSASTQF 137

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
             D  +   ++ MY   G  + +R +FD +  ++   WNA++S Y ++    +A+ I  E
Sbjct: 138 CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 120 M-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +  +     D  T+  ++  CA   ++  G +IH    K  L  ++FV N LI MY K G
Sbjct: 198 LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 179 MMRHAL-RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           ++  A+ RVFD M  + V SWN+++  Y Q++DP  A   +  M  +G+ PD  T+ SL 
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +++        +HGF +R G  + D  IG +++ +Y   G   +A  +F+G+  + +
Sbjct: 318 LACSRMKSLHYGEEIHGFALRNGLAV-DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSL 376

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I GY+QNGL  EAI +F+ M   + I P +   + +  A S + ALR G ++H 
Sbjct: 377 VSWNVMIAGYSQNGLPDEAINLFRQMLS-DGIQPYEIAIMCVCGACSQLSALRLGKELHC 435

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K  L  D+FV++ ++DMY K G I  +  +F ++       WN II+ +GIHG+G +
Sbjct: 436 FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKE 495

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +ML  G++PD  TF  +L ACSH+GLV +G  YF+ M     I+P L+HY C+V
Sbjct: 496 ALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVV 555

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+ GRAG +  A   I+ MP  PD+ IW +LL +CRIHGN+ LG   +++L E++ E   
Sbjct: 556 DMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPE 615

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN++A  GKW+ V  VR   +D GL+K  G S IEV  KV  F  G+   P+ E+
Sbjct: 616 NYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEE 675

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           + +  R L  K+ S+GY PD   VL D+EE++K  IL  HSE+LAI+FG++++    P++
Sbjct: 676 VRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVR 735

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++KNLR+CGDCHN  KFIS++  R+I+VRD+ RFHHF+DGICSCGDYW
Sbjct: 736 VYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 162/510 (31%), Positives = 269/510 (52%), Gaps = 24/510 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y R     +A+  F +    +  +PD +T P V+KAC  L+D   G+ IH    K+
Sbjct: 178 IVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKM 237

Query: 58  GFEWDVFVAASLLHMYCRFGLANVA-RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               DVFV  +L+ MY + GL   A +++FD M  +   SWNA++ GY Q+ +  +ALD+
Sbjct: 238 DLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDL 297

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M   G+  D  T+ S+L  C+R  ++  G  IH + +++GL  + F+  +L+++Y  
Sbjct: 298 YLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYIC 357

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G    A  +FD M  R +VSWN +IA Y Q+  P  A   F  M   GIQP  + ++ +
Sbjct: 358 CGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 417

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               +QL+  R  + +H F + +    ED+ + ++++DMYAK G I  +  +F+ L  KD
Sbjct: 418 CGACSQLSALRLGKELHCFAL-KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD 476

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V SWN +I GY  +G   EA+E+F+ M     + P+  T+  IL A SH G +  G++  
Sbjct: 477 VASWNVIIAGYGIHGRGKEALELFEKMLRLG-LKPDDFTFTGILMACSHAGLVEDGLEYF 535

Query: 357 ARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            +++  + +   +   TC+VDM G+ GRIDDA+ L  ++P    S  W++++S   IHG 
Sbjct: 536 NQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGN 595

Query: 415 ---GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
              G+K  N   ++  E  +P++   +S L A   SG   + +R    M+ + G++   K
Sbjct: 596 LGLGEKVANKLLEL--EPEKPENYVLISNLFA--GSGKWDDVRRVRGRMK-DIGLQ---K 647

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             GC     G     G  HNF+    + P+
Sbjct: 648 DAGCSWIEVG-----GKVHNFLIGDEMLPE 672



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 210/427 (49%), Gaps = 20/427 (4%)

Query: 101 ISGYCQSGNAVEALDIL----DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           I   C+SGN  EALD L    D++ L+        +  +L  C +  +I  G  +H  + 
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSE-AMGVLLQACGQRKDIEVGRRLHEMVS 132

Query: 157 KHGLEFNLFVSNN-LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
                 N FV N  +I MY+  G    +  VFD++  +++  WN+I++AY ++     A 
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 216 GFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
             F+ +      +PD  TL  +    A L D    + +HG   +    + DV +GNA++ 
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMD-LVSDVFVGNALIA 251

Query: 275 MYAKLGIINSACA-VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           MY K G++  A   VF+ +  K V SWN L+ GYAQN    +A++++  M +   ++P+ 
Sbjct: 252 MYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDW 310

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T  S+L A S + +L  G +IH   ++N L  D F+   L+ +Y  CG+   A  LF  
Sbjct: 311 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDG 370

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +   S V WN +I+ +  +G  D+A+N FRQML +G++P  I  + +  ACS    +  G
Sbjct: 371 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 430

Query: 454 QRYFHMMQEEFGIKPHLKH----YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +   H     F +K HL         ++D++ + G +G++      +  + D + W  ++
Sbjct: 431 KE-LHC----FALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVII 484

Query: 510 GACRIHG 516
               IHG
Sbjct: 485 AGYGIHG 491


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/658 (38%), Positives = 393/658 (59%), Gaps = 2/658 (0%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K IH  +L+L  + D ++   +L     FG  N ++ +F  +   +   WN MI G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               +A+ +   MR  G   +  T+  +L  CAR  ++  GL IH  +VK G + ++FV 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +L+++Y K      AL+VFD + +++VVSW +II  Y  S     A G F  + + G++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  +LV + +  A+L DC +   +  +I   G    +V +  +++DMY K G +  A  
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSG-MGRNVFVATSLLDMYVKCGNLERANL 271

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  +P KD++SW+T+I GYA NGL  +A+++F  M+  N + P+  T V +L A + +G
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN-LKPDCYTMVGVLSACATLG 330

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  GI   + + +N    +  + T L+DMY KCG +  A  +F  + +   V WNA++ 
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMV 390

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              ++G      + F  +   G+RPD  TF+ LL  C+H G V+EG+++F+ M+  F + 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLT 450

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++HYGCMVDL GRAG L  AH  I NMP++P+A +WGALLG C++H +  L      +
Sbjct: 451 PSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E++  N G YV +SNIY+   +WE  +++RS  +++ ++K    S IE++  V  F  
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+++H   EKIY +L  L  ++K++G+VP   FVL D+EE+EKEH L  HSE+LA+AFG+
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGL 630

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+SPP   I++ KNLRVCGDCH+  K IS+IT+REII+RD+NRFH F DG CSC DYW
Sbjct: 631 IASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 223/429 (51%), Gaps = 25/429 (5%)

Query: 16  DCF------YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVA 66
           DCF      Y      G  P+ +T P VLKAC   +D   G KIH  ++K G++ DVFV 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            SLL +Y +    + A K+FDD+P ++  SW A+I+GY  SG+  EA+    ++   G+ 
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            D  ++  +L  CAR  +  SG  I  YI   G+  N+FV+ +L++MY K G +  A  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M E+D+VSW+++I  Y  +  P  A   F  MQ   ++PD  T+V + S  A L   
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                    +M R  F+ + ++G A++DMY+K G +  A  +F  +  KD + WN ++ G
Sbjct: 333 DLGIWASS-LMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVG 391

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            + NG A     +F ++E+ + I P++ T++ +L   +H G + +G +    + +     
Sbjct: 392 LSMNGHAKAVFSLFSLVEK-HGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR----- 445

Query: 367 DVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
            VF  T       C+VD+ G+ G +++A  L   +P + ++V W A++    +H     A
Sbjct: 446 -VFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 419 LNFFRQMLD 427
               +++++
Sbjct: 505 EQVLKKLIE 513


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/646 (40%), Positives = 366/646 (56%), Gaps = 80/646 (12%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           EWDV    +L+  Y ++G  + AR+LFD MP RD  SWN M+SGY + G+ VEA  + D 
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 124

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
                    P+                                ++F    +++ YA+ GM
Sbjct: 125 A--------PVR-------------------------------DVFTWTAVVSGYAQNGM 145

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVFD M ER+ VSWN+++AAY Q      A   F  M                  
Sbjct: 146 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP----------------- 188

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                 CRN  S         W        N ++  YA+ G++  A AVF+ +P KD +S
Sbjct: 189 ------CRNVAS---------W--------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 225

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  ++  Y+Q G + E +++F  M  C E   N+  +  +L   + + AL  G+++H R+
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGRL 284

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           I+       FV   L+ MY KCG ++DA + F ++     V WN +I+ +  HG G +AL
Sbjct: 285 IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEAL 344

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M     +PD IT V +L ACSHSGLV +G  YF+ M  +FG+    +HY CM+DL
Sbjct: 345 EIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDL 404

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  AH+ +++MP  PD+++WGALLGA RIH N ELG  A++++FE++ EN G Y
Sbjct: 405 LGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMY 464

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA+ GKW    ++R +  +RG+KK PG+S IEV NKV  F  G+  HP+ EKIY
Sbjct: 465 VLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIY 524

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L +L  +MK  GYV     VL DVEE+EKEH+L  HSE+LA+A+GI++ PP  PI++ 
Sbjct: 525 AFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVI 584

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCHN  K+IS I  R I++RDSNRFHHF+ G CSCGDYW
Sbjct: 585 KNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ Y + G   E +  F +     G   +   F  VL  C ++     G ++H  +++ 
Sbjct: 229 MLAAYSQGGCSEETLQLFIEMG-RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA 287

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+    FV  +LL MY + G    AR  F++M  RD  SWN MI+GY + G   EAL+I 
Sbjct: 288 GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF 347

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
           D MR      D IT+  +L  C+ S  +  G + + Y + H  G+         +I++  
Sbjct: 348 DMMRTTSTKPDDITLVGVLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLG 406

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL- 233
           + G +  A  +   M  E D   W +++ A     +P         + +  ++P+   + 
Sbjct: 407 RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPENAGMY 464

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           V L++I A     R++R +   +  RG
Sbjct: 465 VLLSNIYASSGKWRDARKMRVMMEERG 491


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/694 (38%), Positives = 413/694 (59%), Gaps = 13/694 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+  L +G RPD +TFP VLK C     L +G+  H +V+KLG   DV+ A SL+ +Y +
Sbjct: 108 YRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAK 167

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR-LEGVSMDPITVAS 134
            GL   A ++FD MP RD  SWN M+ GY  +G    AL    EM     V  D + V +
Sbjct: 168 LGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIA 227

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
            L  C     +  G  IH Y ++HGLE ++ V  +L++MY K G +  A  VF +M  R 
Sbjct: 228 ALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRT 287

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+WN +I  Y  +  P+ A   F  M+  G Q +++T ++L +  AQ       RSVH 
Sbjct: 288 VVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHA 347

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +++RR  F+  V++  A+++MY K+G + S+  +F  +  K ++SWN +I  Y    +  
Sbjct: 348 YVVRR-HFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQ 406

Query: 315 EAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           EAI +F  +E  N+ + P+  T  +++PA+  +G++RQ  ++H+ ++K        +   
Sbjct: 407 EAIALF--LELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNA 464

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           ++ MY +CG I  +  +F ++P    + WN II  + IHGQG  AL  F +M   G+ P+
Sbjct: 465 VMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPN 524

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
             TFVS+LTACS SGL +EG + F+ MQ+E+G+ P ++HYGCM DL GRAG L     FI
Sbjct: 525 ESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFI 584

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           +NMP+ P + IWG+LL A R   ++++   A++R+F+++  N G YV++S++YA+ G+WE
Sbjct: 585 ENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWE 644

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V+ +RSL +++GL++T   S +E+NNK   F  G+ +HP+ EKI+ E  ++ +  +++G
Sbjct: 645 DVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIH-EFSDILS--RNIG 701

Query: 614 YVPDKSFVLQDVE--EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
              D S  L+D +        +   HS RLA+AFG+ISS   SP+ + KN+RVC  CH+ 
Sbjct: 702 EDLDSSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRVCNHCHHA 761

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K IS+ + R+I+V D+  +H F DG C CGDYW
Sbjct: 762 LKLISKYSGRKIVVGDTKIYHIFSDGSCCCGDYW 795



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 208/425 (48%), Gaps = 5/425 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N MI G+  +   ++AL     M   G   D  T   +L  CAR+  +  G   H  ++K
Sbjct: 89  NVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIK 148

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GL  +++ +N+L+ +YAK G++  A RVFD M  RD+VSWN+++  Y  +     A   
Sbjct: 149 LGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALAC 208

Query: 218 FTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           F  M  A  +  D + +++  +     +     R +HG+ +R G   +DV +G ++VDMY
Sbjct: 209 FREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHG-LEQDVKVGTSLVDMY 267

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G +  A  VF  +P++ V++WN +I GYA N    +A + F  M   +       T 
Sbjct: 268 CKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQM-RVDGFQVEVVTA 326

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           +++L A +   +   G  +HA V++      V + T L++MYGK G+++ +  +F Q+  
Sbjct: 327 INLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITD 386

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            + V WN +I+ +       +A+  F ++L++ + PD+ T  +++ A    G + + ++ 
Sbjct: 387 KTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQ- 445

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    + G          ++ ++ R G++  +      MP + D   W  ++    IHG
Sbjct: 446 MHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGK-DVISWNTIIIGYAIHG 504

Query: 517 NMELG 521
             ++ 
Sbjct: 505 QGKIA 509



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 4/232 (1%)

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G ++ A   F G+        N +I G+A   L  +A+  ++ M +     P++ T+  +
Sbjct: 68  GRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGA-RPDRFTFPVV 126

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L   +  GAL +G   HA VIK  L  DV+ A  LV +Y K G + DA  +F  +P    
Sbjct: 127 LKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDI 186

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           V WN ++  +  +G G  AL  FR+M D   V  D +  ++ L AC     ++ G R  H
Sbjct: 187 VSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALG-REIH 245

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
                 G++  +K    +VD++ + G++  A N    MP+R   + W  ++G
Sbjct: 246 GYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVT-WNCMIG 296


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/735 (38%), Positives = 393/735 (53%), Gaps = 84/735 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---------CRNLVDGKKIH 51
           M++ Y   GRL  A   F         RPD Y++  +L A          R L D   + 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIP-----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVR 129

Query: 52  CSV---------------------LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
            SV                       L  E D      +L  Y R G    AR LF+   
Sbjct: 130 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             D+ SWNA++SGY Q G   EA ++ D M    V    I V+       R D + +  L
Sbjct: 190 EWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGY---ARRGDMVEARRL 246

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                V+     ++F    +++ YA+ GM+  A RVFD M ER+ VSWN+++AAY Q   
Sbjct: 247 FDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRM 301

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M                        CRN  S         W        N
Sbjct: 302 MDEAKELFNMMP-----------------------CRNVAS---------W--------N 321

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++  YA+ G++  A AVF+ +P KD +SW  ++  Y+Q G + E +++F  M  C E  
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW- 380

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            N+  +  +L   + + AL  G+++H R+I+       FV   L+ MY KCG ++DA + 
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++     V WN +I+ +  HG G +AL  F  M     +PD IT V +L ACSHSGLV
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +G  YF+ M  +FG+    +HY CM+DL GRAG L  AH+ +++MP  PD+++WGALLG
Sbjct: 501 EKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLG 560

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           A RIH N ELG  A++++FE++ EN G YVL+SNIYA+ GKW    ++R +  +RG+KK 
Sbjct: 561 ASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKV 620

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG+S IEV NKV  F  G+  HP+ EKIY  L +L  +MK  GYV     VL DVEE+EK
Sbjct: 621 PGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEK 680

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           EH+L  HSE+LA+A+GI++ PP  PI++ KNLRVCGDCHN  K+IS I  R I++RDSNR
Sbjct: 681 EHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNR 740

Query: 691 FHHFKDGICSCGDYW 705
           FHHF+ G CSCGDYW
Sbjct: 741 FHHFRGGSCSCGDYW 755



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 214/476 (44%), Gaps = 64/476 (13%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E +V  +   +  + R G    A +LF  MP R + ++NAM++GY  +G          
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANG---------- 83

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLF---------VS 167
             RL      P+  AS+     R DN     L+H   V   L     LF           
Sbjct: 84  --RL------PL-AASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTY 134

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N +I+ +A  G++  A   FD   E+D VSWN ++AAY ++     A G F +  +    
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--- 191

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D ++  +L S   Q      +R +   +  R     DV+  N +V  YA+ G +  A  
Sbjct: 192 -DAISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARR 245

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+  PV+DV +W  +++GYAQNG+  EA  VF  M E N ++ N     +++ AY    
Sbjct: 246 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWN-----AMVAAY---- 296

Query: 348 ALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +++ +   A+ + N + C +V     ++  Y + G +++A ++F  +P+  +V W A++
Sbjct: 297 -IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 355

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFG 465
           + +   G  ++ L  F +M   G   +   F  +L+ C+    +  G Q +  +++  +G
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 466 IKPHLKHYGCMVD-----LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +       GC V      ++ + G++  A N  + M  R D   W  ++     HG
Sbjct: 416 V-------GCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 113/261 (43%), Gaps = 21/261 (8%)

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    +VI  N  +  + + G +  A  +F  +P +   ++N ++ GY+ NG    A  +
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMY 378
           F+ +       P+  +Y ++L A +   +L     +   + +++ + ++V +++     +
Sbjct: 92  FRAIPR-----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISS-----H 141

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
              G +  A   F   P   +V WN +++ +  +G+ ++A    R + +     D I++ 
Sbjct: 142 ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDAISWN 197

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           +L++     G +SE +  F  M         +  +  MV  + R G +  A       PV
Sbjct: 198 ALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDAAPV 252

Query: 499 RPDASIWGALLGACRIHGNME 519
           R D   W A++     +G +E
Sbjct: 253 R-DVFTWTAVVSGYAQNGMLE 272


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/705 (39%), Positives = 397/705 (56%), Gaps = 38/705 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC---RFGLANVARKLFDDMPVRD 93
           +L  C+ L   + IH  ++K G     +  + LL +      F     A  +F+ +   +
Sbjct: 39  LLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPN 98

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN M  G+  S + V AL +   M   G+  +  T   +L  CA+S     G  IH 
Sbjct: 99  LLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHG 158

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---------------- 197
           +++K G + +LFV  +LI++Y + G +  A +VFD+   RDVVS                
Sbjct: 159 HVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIES 218

Query: 198 ---------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
                          WN++I+ Y ++ +   A   F  M +  I+PD  T+V++ S  AQ
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQ 278

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                  R VH +I   G F  ++ I N+++D+Y+K G + +AC +FEGL  KDVISWNT
Sbjct: 279 SGSIELGRQVHSWIDDHG-FGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNT 337

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI GY    L  EA+ +FQ M    E  PN  T +SILPA +H+GA+  G  IH  + K 
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396

Query: 363 CLCFD--VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
                    + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ D A +
Sbjct: 397 LKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFD 456

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M   G+ PD ITFV LL+ACS SG++  G+  F  M +++ I P L+HYGCM+DL 
Sbjct: 457 IFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLL 516

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           G +G    A   I NM + PD  IW +LL AC+I GN+ELG   +  L +++ EN G YV
Sbjct: 517 GHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYV 576

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA  G+W  V ++R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY 
Sbjct: 577 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I K
Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 696

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVC +CH  TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 697 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 209/429 (48%), Gaps = 41/429 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +ISVYV+ GRL +A             R  F   P                         
Sbjct: 175 LISVYVQNGRLEDA-------------RKVFDRSP------------------------H 197

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV    +L+  Y   G    A+KLFD++PV+D  SWNAMISGY ++GN  EAL++  EM
Sbjct: 198 RDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM 257

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
               +  D  T+ +++  CA+S +I  G  +H +I  HG   NL + N+L+++Y+K G +
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGEL 317

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +F+ ++ +DV+SWN++I  Y   N    A   F  M ++G +P+ +T++S+    
Sbjct: 318 ETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPAC 377

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           A L      R +H +I +R     +   +  +++DMYAK G I +A  VF  +  K + S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN +I G+A +G A  A ++F  M +   I P+  T+V +L A S  G L  G  I   +
Sbjct: 438 WNAMIFGFAMHGRADAAFDIFSRMRKIG-IEPDDITFVGLLSACSRSGMLDLGRHIFRTM 496

Query: 360 IKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
            ++  +   +    C++D+ G  G   +A  +   +      V W +++    I G  + 
Sbjct: 497 TQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVEL 556

Query: 418 ALNFFRQML 426
             +F + ++
Sbjct: 557 GESFAQNLI 565


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/710 (38%), Positives = 408/710 (57%), Gaps = 37/710 (5%)

Query: 32  YTFPPVLKACRNLVD-----GKKIHCSVLKLGF---EWDVFVAASLLHMYCRFGLANVAR 83
           +T   VL AC +L D     G++ H   LK GF     + F   +LL MY R GL + A+
Sbjct: 153 FTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQ 212

Query: 84  KLF--DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           +LF      V D  +WN MIS   Q G   EA+ +L +M   GV  D +T AS LP C+R
Sbjct: 213 RLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSR 272

Query: 142 SDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSW 198
            + +  G  +H +++K   L  N FV++ L++MYA    + HA RVFD + E  R +  W
Sbjct: 273 LELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMW 332

Query: 199 NSIIAAYEQSN--DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           N++I  Y Q    D      F     +AG  P   T+  +    A+        +VHG++
Sbjct: 333 NAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYV 392

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++R     +  + NA++DMYA+LG ++ A  +F  + ++D++SWNTLITG    GL SEA
Sbjct: 393 VKRD-MASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEA 451

Query: 317 IEVFQMME-------------------ECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ++ + M+                   +     PN  T +++LP  + + A  +G +IH 
Sbjct: 452 FQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHG 511

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +++ L  D+ V + LVDMY KCG +  A ++F ++PR + + WN +I  +G+HG GD+
Sbjct: 512 YAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDE 571

Query: 418 ALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           AL  F +M+  G   P+ +TF++ L ACSHSGLV  G   F  M+ ++G +P    + C+
Sbjct: 572 ALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACV 631

Query: 477 VDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           VD+ GRAG L  A+  I +M P     S W  +LGACR+H N++LG +A++RLFE++ + 
Sbjct: 632 VDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDE 691

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
             +YVL+ NIY+  G WE   EVR + R RG+ K PG S IE++  +  F  G   HP+ 
Sbjct: 692 ASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPES 751

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            +++  +  L  +M+  GYVPD S VL DV+E EK  +L  HSE+LAIAFG++ +PP + 
Sbjct: 752 AQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGAT 811

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLRVC DCH   KFIS++  REI++RD  RFHHF+DG CSCGDYW
Sbjct: 812 IRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 298/622 (47%), Gaps = 70/622 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLK- 56
           MIS+ V+ GR  EAV   Y   +  G+RPD  TF   L AC  L     G+++H  VLK 
Sbjct: 231 MISLLVQGGRCEEAVQVLYDM-VALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKD 289

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNA-VEA 113
                + FVA++L+ MY      + AR++FD +P   R  G WNAMI GY Q G    EA
Sbjct: 290 DDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEA 349

Query: 114 LDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           +++   M  E G +    T+A +LP CARS+       +H Y+VK  +  N FV N L++
Sbjct: 350 IELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMD 409

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAA-------------YEQSNDPITA----- 214
           MYA+ G M  A  +F  +  RD+VSWN++I                 +   P +A     
Sbjct: 410 MYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGET 469

Query: 215 --HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
              G  T++      P+ +TL++L    A L      + +HG+ +R      D+ +G+A+
Sbjct: 470 MLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHA-LESDLAVGSAL 528

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           VDMYAK G +  A AVF+ LP ++VI+WN LI  Y  +GL  EA+ +F  M    E  PN
Sbjct: 529 VDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPN 588

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMYGKCGRIDDAMSL 390
           + T+++ L A SH G + +G+++  + +K    F+   ++  C+VD+ G+ GR+D+A  +
Sbjct: 589 EVTFIAALAACSHSGLVDRGLELF-QGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGI 647

Query: 391 FYQV-PRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT-FVSLLTACSHS 447
              + P    V  W+ ++    +H +  K      + L E + PD  + +V L    S +
Sbjct: 648 ISSMAPGEHQVSAWSTMLGACRLH-RNVKLGRIAAERLFE-LEPDEASHYVLLCNIYSAA 705

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           GL         MM++  G+    K  GC  ++L       G  H F+      P+++   
Sbjct: 706 GLWENSTEVRGMMRQR-GVA---KEPGCSWIELD------GAIHRFMAGESAHPESA--- 752

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR----SLA 562
                 ++H +M       D L+E      GY    S +  +V + E    +R     LA
Sbjct: 753 ------QVHAHM-------DALWE-RMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLA 798

Query: 563 RDRGLKKTPGWSSIEVNNKVDI 584
              GL + P  ++I V   + +
Sbjct: 799 IAFGLLRAPPGATIRVAKNLRV 820



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 154/582 (26%), Positives = 258/582 (44%), Gaps = 43/582 (7%)

Query: 30  DFYTFPPVLKACRNLVDGKK---IHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D +  PP +K+   L D +    IH + L+          V+ +LL  Y R G  + A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 85  LFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR- 141
           LF   P  +RD+ S+N++IS  C       ALD L +M L    +   T+ S+L  C+  
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDM-LADHEVSSFTLVSVLLACSHL 165

Query: 142 -SDNILSGLLIHLYIVKHGL---EFNLFVSNNLINMYAKFGMMRHALRVF--DQMMERDV 195
                  G   H + +KHG        F  N L++MYA+ G++  A R+F        D+
Sbjct: 166 ADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDL 225

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           V+WN++I+   Q      A      M   G++PD +T  S     ++L      R VH F
Sbjct: 226 VTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAF 285

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQN-GL 312
           +++      +  + +A+VDMYA    ++ A  VF+ +P   + +  WN +I GYAQ+ G+
Sbjct: 286 VLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGM 345

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EAIE+F  ME      P++ T   +LPA +          +H  V+K  +  + FV  
Sbjct: 346 DEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQN 405

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM------- 425
            L+DMY + GR+D+A ++F  +     V WN +I+   + G   +A    R+M       
Sbjct: 406 ALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAA 465

Query: 426 ----LDEG---------VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
               + EG           P++IT ++LL  C+     + G+   H       ++  L  
Sbjct: 466 SGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKE-IHGYAVRHALESDLAV 524

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF--- 529
              +VD++ + G L +A      +P R +   W  L+ A  +HG  +      DR+    
Sbjct: 525 GSALVDMYAKCGCLALARAVFDRLP-RRNVITWNVLIMAYGMHGLGDEALALFDRMVANG 583

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           E     V +   ++    +     G++  + + RD G + TP
Sbjct: 584 EATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTP 625


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 390/628 (62%), Gaps = 6/628 (0%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K+FD MP R+  +W  MI+ + Q G A +A+D+  +M L G   D  T +S+L  C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERDVVSW 198
              +  G  +H  +++ GL  ++ V  +L++MYAK    G +  + +VF+QM E +V+SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 199 NSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
            +II AY QS +    A   F  M    I+P+  +  S+      L+D      V+ + +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           + G    + + GN+++ MYA+ G +  A   F+ L  K+++S+N ++ GYA+N  + EA 
Sbjct: 189 KLGIASVNCV-GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
            +F  + +   I  +  T+ S+L   + +GA+ +G +IH R++K     +  +   L+ M
Sbjct: 248 LLFNEIADTG-IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y +CG I+ A  +F ++   + + W ++I+    HG   +AL  F +ML+ G +P+ IT+
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           V++L+ACSH G++SEGQ++F+ M +E GI P ++HY CMVDL GR+G L  A  FI +MP
Sbjct: 367 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           +  DA +W  LLGACR+HGN ELG  A++ + E + ++   Y+L+SN++A+ G+W+ V +
Sbjct: 427 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 486

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +R   ++R L K  G S IEV N+V  F+ G  +HP+  +IY EL  L +K+K +GY+PD
Sbjct: 487 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 546

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
             FVL D+EE++KE  L  HSE++A+AFG+IS+    PI+IFKNLRVCGDCH   K+IS 
Sbjct: 547 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 606

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
            T REI+VRDSNRFHH K+G+CSC DYW
Sbjct: 607 ATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 236/442 (53%), Gaps = 14/442 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI+ + + G   +A+D F    L SG  PD +T+  VL AC  L     GK++H  V++L
Sbjct: 27  MITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRL 85

Query: 58  GFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA-VEA 113
           G   DV V  SL+ MY +    G  + +RK+F+ MP  +  SW A+I+ Y QSG    EA
Sbjct: 86  GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEA 145

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           +++  +M    +  +  + +S+L  C    +  +G  ++ Y VK G+     V N+LI+M
Sbjct: 146 IELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISM 205

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YA+ G M  A + FD + E+++VS+N+I+  Y ++     A   F  +   GI     T 
Sbjct: 206 YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 265

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL S  A +        +HG +++ G +  +  I NA++ MY++ G I +A  VF  + 
Sbjct: 266 ASLLSGAASIGAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEME 324

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            ++VISW ++ITG+A++G A+ A+E+F  M E     PN+ TYV++L A SHVG + +G 
Sbjct: 325 DRNVISWTSMITGFAKHGFATRALEMFHKMLETG-TKPNEITYVAVLSACSHVGMISEGQ 383

Query: 354 K-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGI 411
           K  ++   ++ +   +    C+VD+ G+ G + +AM     +P  + ++ W  ++    +
Sbjct: 384 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 443

Query: 412 HGQGDKALNFFRQMLDEGVRPD 433
           HG  +   +    +L++   PD
Sbjct: 444 HGNTELGRHAAEMILEQ--EPD 463



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 178/367 (48%), Gaps = 22/367 (5%)

Query: 1   MISVYVRCGRL-SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLK 56
           +I+ Y + G    EA++ F +  ++  +RP+ ++F  VLKAC NL D   G++++   +K
Sbjct: 131 IITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 189

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           LG      V  SL+ MY R G    ARK FD +  ++  S+NA++ GY ++  + EA  +
Sbjct: 190 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 249

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +E+   G+ +   T AS+L   A    +  G  IH  ++K G + N  + N LI+MY++
Sbjct: 250 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSR 309

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A +VF++M +R+V+SW S+I  + +      A   F  M + G +P+ +T V++
Sbjct: 310 CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAV 369

Query: 237 TSIVAQLNDCRNSR-------SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
            S  + +      +         HG + R   +         +VD+  + G++  A    
Sbjct: 370 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-------CMVDLLGRSGLLVEAMEFI 422

Query: 290 EGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
             +P+  D + W TL+     +G         +M+ E    +P    Y+ +   ++  G 
Sbjct: 423 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP--AAYILLSNLHASAGQ 480

Query: 349 LRQGIKI 355
            +  +KI
Sbjct: 481 WKDVVKI 487


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/743 (37%), Positives = 423/743 (56%), Gaps = 42/743 (5%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
            M+S YVR G   EAV  F Q     G+ P+ +    ++ AC        +G ++H  V+K
Sbjct: 345  MLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 403

Query: 57   LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
             G   DV+V  +L+H Y   GL   A+KLF++MP  +  SW +++ GY  SGN  E L++
Sbjct: 404  TGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNV 463

Query: 117  LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
               MR EGVS +  T A++   C   ++ + G  +  +I+++G E ++ V+N+LI+M++ 
Sbjct: 464  YQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSS 523

Query: 177  FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            F  +  A  VFD M E D++SWN++I+AY        +   F  M+    + +  TL SL
Sbjct: 524  FSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSL 583

Query: 237  TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
             S+ + +++ +  R +HG +++ G    +V I N ++ +Y++ G    A  VF+ +  +D
Sbjct: 584  LSVCSSVDNLKWGRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERD 642

Query: 297  VISWNT----------------------------------LITGYAQNGLASEAIEVFQM 322
            +ISWN+                                  LI G+A+N   +EA++ +++
Sbjct: 643  LISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKL 702

Query: 323  MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
            + E   I  N  T VS L A +++  L +G ++H  VIK     D+ V    +DMYGKCG
Sbjct: 703  IRE-KGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 760

Query: 383  RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
             + D + +  Q    S + WN +IS    HG   KA   F +ML  G +PDH+TFVSLL+
Sbjct: 761  EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 820

Query: 443  ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            AC+H GLV EG  Y+  M  EFG+ P ++H  C++DL GR+G L  A  FI+ MPV P+ 
Sbjct: 821  ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPND 880

Query: 503  SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
              W +LL ACRIHGN+EL    ++ L E+D  +   YVL SN+ A  GKWE V+ +R   
Sbjct: 881  LAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEM 940

Query: 563  RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
                +KK P  S +++ +KV  F  G + HP+  +I  +L  L    K  GYVPD SF L
Sbjct: 941  GSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFAL 1000

Query: 623  QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
             D++E++KE+ L +HSERLA+AFG+I++P  S ++IFKNLRVCGDCH+  KF+S I  R+
Sbjct: 1001 HDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRK 1060

Query: 683  IIVRDSNRFHHFKDGICSCGDYW 705
            I++RD  RFHHF  G CSCGDYW
Sbjct: 1061 IVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 150/594 (25%), Positives = 245/594 (41%), Gaps = 135/594 (22%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           GRL+EA+    +   ++  R D   +  +L+ C   +    G  IH  ++  GF  D+ +
Sbjct: 12  GRLAEAL----KLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+  Y + G    AR +FD MP R   SW AM+SGY Q+G   +A  +  +MR  GV
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                                                    ++ L++ ++K G M  A  
Sbjct: 128 K---------------------------------------ANHALVDFHSKCGKMEDASY 148

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F  MMERDVVSWN++I  Y        +   F +M + G+ PD  TL S+    A+   
Sbjct: 149 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGG 208

Query: 246 CRNSRSVHGFIMRRGWFMEDVI-------------------------------------- 267
              +  +HG I + G+   D++                                      
Sbjct: 209 LIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITG 268

Query: 268 --------IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA--SEAI 317
                   +GNA++DMYAK G I  A   F+ +  K+VISW +LI+GYA++G    + A 
Sbjct: 269 YAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHAR 328

Query: 318 EVFQMMEECNE------------------------------INPNQGTYVSILPAYSHVG 347
            VF  M   NE                              + PN     S++ A S  G
Sbjct: 329 YVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 388

Query: 348 ALR-QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +  +G ++H  V+K  +  DV+V T LV  YG  G + +A  LF ++P  + V W +++
Sbjct: 389 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 448

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG----QRYFHMMQE 462
             +   G   + LN +++M  EGV  +  TF ++ ++C   GL+ +     Q   H++Q 
Sbjct: 449 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQ- 504

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +G +  +     ++ +F     +  A     +M    D   W A++ A   HG
Sbjct: 505 -YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHHG 556



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 193/439 (43%), Gaps = 83/439 (18%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +L+  + + G    A  LF  M  RD  SWNAMI GY   G A ++  +   M   G+  
Sbjct: 132 ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 191

Query: 128 DPITVASILPVCAR--------------------SDNILSGLLIHLY-----------IV 156
           D  T+ S+L   A                     S +I++GLLI+ Y           + 
Sbjct: 192 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 251

Query: 157 KHGLEFNLFVS----------------NNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           K  L+ +LF S                N LI+MYAK G +  A R FD+M E++V+SW S
Sbjct: 252 KGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 311

Query: 201 IIAAYEQSNDPITAH---------------------------------GFFTTMQQAGIQ 227
           +I+ Y +      AH                                 G F  M   G++
Sbjct: 312 LISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 371

Query: 228 PDLLTLVSLTSIVAQLNDCRNSR-SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           P+   + SL +  ++     +    VHGF+++ G  + DV +G A+V  Y  +G++ +A 
Sbjct: 372 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTG-ILGDVYVGTALVHFYGSIGLVYNAQ 430

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +FE +P  +V+SW +L+ GY+ +G   E + V+Q M +   ++ NQ T+ ++  +   +
Sbjct: 431 KLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ-EGVSGNQNTFATVTSSCGLL 489

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
                G ++   +I+      V VA  L+ M+     +++A  +F  +     + WNA+I
Sbjct: 490 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMI 549

Query: 407 SCHGIHGQGDKALNFFRQM 425
           S +  HG   ++L  F  M
Sbjct: 550 SAYAHHGLCRESLRCFHWM 568



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 187/497 (37%), Gaps = 125/497 (25%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           I   C  G   EAL +L         +DP     IL +C        G LIH +++ +G 
Sbjct: 5   IQSACNLGRLAEALKLLSS---NPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGF 61

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             +L ++  LI  Y K G +  A  VFD M ER VVSW ++++ Y Q+     A   F+ 
Sbjct: 62  GSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSD 121

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M+  G++ +                                        +A+VD ++K G
Sbjct: 122 MRHCGVKAN----------------------------------------HALVDFHSKCG 141

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +  A  +F  +  +DV+SWN +I GYA  G A ++  +F+ M     + P+  T  S+L
Sbjct: 142 KMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLV-PDCYTLGSVL 200

Query: 341 PAYSHVGALRQGIKIHARVI-------------------------------KNCLCFDVF 369
            A +  G L    +IH  +                                K  L  D+F
Sbjct: 201 RASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLF 260

Query: 370 VAT----------------CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +T                 L+DMY K G I+DA   F ++   + + W ++IS +  HG
Sbjct: 261 SSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHG 320

Query: 414 QG---------------------------------DKALNFFRQMLDEGVRPDHITFVSL 440
            G                                 ++A+  F QM   GV P+     SL
Sbjct: 321 YGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL 380

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           +TACS SG +++     H    + GI   +     +V  +G  G +  A    + MP   
Sbjct: 381 ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN 440

Query: 501 DASIWGALLGACRIHGN 517
             S W +L+      GN
Sbjct: 441 VVS-WTSLMVGYSDSGN 456


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 390/628 (62%), Gaps = 6/628 (0%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K+FD MP R+  +W  MI+ + Q G A +A+D+  +M L G   D  T +S+L  C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHALRVFDQMMERDVVSW 198
              +  G  +H  +++ GL  ++ V  +L++MYAK    G +  + +VF+QM E +V+SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 199 NSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
            +II AY QS +    A   F  M    I+P+  +  S+      L+D      V+ + +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           + G    + + GN+++ MYA+ G +  A   F+ L  K+++S+N ++ GYA+N  + EA 
Sbjct: 184 KLGIASVNCV-GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
            +F  + +   I  +  T+ S+L   + +GA+ +G +IH R++K     +  +   L+ M
Sbjct: 243 LLFNEIADTG-IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y +CG I+ A  +F ++   + + W ++I+    HG   +AL  F +ML+ G +P+ IT+
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           V++L+ACSH G++SEGQ++F+ M +E GI P ++HY CMVDL GR+G L  A  FI +MP
Sbjct: 362 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           +  DA +W  LLGACR+HGN ELG  A++ + E + ++   Y+L+SN++A+ G+W+ V +
Sbjct: 422 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 481

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +R   ++R L K  G S IEV N+V  F+ G  +HP+  +IY EL  L +K+K +GY+PD
Sbjct: 482 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 541

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
             FVL D+EE++KE  L  HSE++A+AFG+IS+    PI+IFKNLRVCGDCH   K+IS 
Sbjct: 542 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 601

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
            T REI+VRDSNRFHH K+G+CSC DYW
Sbjct: 602 ATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 236/442 (53%), Gaps = 14/442 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI+ + + G   +A+D F    L SG  PD +T+  VL AC  L     GK++H  V++L
Sbjct: 22  MITRFAQLGCARDAIDLFLDMEL-SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRL 80

Query: 58  GFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA-VEA 113
           G   DV V  SL+ MY +    G  + +RK+F+ MP  +  SW A+I+ Y QSG    EA
Sbjct: 81  GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEA 140

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           +++  +M    +  +  + +S+L  C    +  +G  ++ Y VK G+     V N+LI+M
Sbjct: 141 IELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISM 200

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YA+ G M  A + FD + E+++VS+N+I+  Y ++     A   F  +   GI     T 
Sbjct: 201 YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 260

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL S  A +        +HG +++ G +  +  I NA++ MY++ G I +A  VF  + 
Sbjct: 261 ASLLSGAASIGAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEME 319

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            ++VISW ++ITG+A++G A+ A+E+F  M E     PN+ TYV++L A SHVG + +G 
Sbjct: 320 DRNVISWTSMITGFAKHGFATRALEMFHKMLETG-TKPNEITYVAVLSACSHVGMISEGQ 378

Query: 354 K-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGI 411
           K  ++   ++ +   +    C+VD+ G+ G + +AM     +P  + ++ W  ++    +
Sbjct: 379 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 438

Query: 412 HGQGDKALNFFRQMLDEGVRPD 433
           HG  +   +    +L++   PD
Sbjct: 439 HGNTELGRHAAEMILEQ--EPD 458



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 177/360 (49%), Gaps = 8/360 (2%)

Query: 1   MISVYVRCGRL-SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLK 56
           +I+ Y + G    EA++ F +  ++  +RP+ ++F  VLKAC NL D   G++++   +K
Sbjct: 126 IITAYAQSGECDKEAIELFCKM-ISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 184

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           LG      V  SL+ MY R G    ARK FD +  ++  S+NA++ GY ++  + EA  +
Sbjct: 185 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 244

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +E+   G+ +   T AS+L   A    +  G  IH  ++K G + N  + N LI+MY++
Sbjct: 245 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSR 304

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A +VF++M +R+V+SW S+I  + +      A   F  M + G +P+ +T V++
Sbjct: 305 CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAV 364

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-K 295
            S  + +      +     + +    +  +     +VD+  + G++  A      +P+  
Sbjct: 365 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 424

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D + W TL+     +G         +M+ E    +P    Y+ +   ++  G  +  +KI
Sbjct: 425 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP--AAYILLSNLHASAGQWKDVVKI 482


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/706 (38%), Positives = 412/706 (58%), Gaps = 10/706 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D +Y+  L +G+RPD YTFP VL+ C  + D   G+++H  VL+ 
Sbjct: 168 MVGGYGKVGFLEEALDLYYRM-LWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRF 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +V V  +L+ MY + G    ARK+FD M V D  SWNAMI+G+ ++      L++ 
Sbjct: 227 GFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELF 286

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V  + +T+ S+         +     +H + VK G   ++   N+LI MY   
Sbjct: 287 LTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSL 346

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A ++F +M  +D +SW ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 347 GRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASAL 406

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G F+  V++ NA+++MYAK   I+ A  VF+ +  KDV
Sbjct: 407 AACACLGRLDVGIKLHELAQNKG-FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDV 465

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+++I G+  N  + EA+  F+ M     + PN  T+++ L A +  GALR G +IHA
Sbjct: 466 VSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSACAATGALRSGKEIHA 523

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  +  + +V   L+D+Y KCG+   A + F        V WN ++S    HG GD 
Sbjct: 524 YVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDI 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM++ G  PD +TFV+LL ACS +G+V +G   FHMM E+F I P+LKHY CMV
Sbjct: 584 ALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G L  A+N I  MP++PDA++WGALL  CRIH ++ELG +A+  + E++  +V 
Sbjct: 644 DLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVA 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL+ ++Y + GKW  V  VR   R++GL++  G S +EV      F T + +HP+ ++
Sbjct: 704 YHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKE 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L  +  +MK+ G+ P +S   ++V ED+   IL  HSERLA+AFG+I++ P + I 
Sbjct: 764 INVVLHGIYERMKACGFAPVESLEDKEVSEDD---ILCGHSERLAVAFGLINTTPGTTIS 820

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           + KN   C  CH   K IS+I  REI VRD+ + H FKDG CSCGD
Sbjct: 821 VTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 236/457 (51%), Gaps = 8/457 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A ++F  MP RD  SWN M+ GY + G   EALD+   M   G+  
Sbjct: 136 AMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRP 195

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    +   G  +H ++++ G    + V N L+ MYAK G +  A +VF
Sbjct: 196 DVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++++       F TM +  +QP+L+T+ S+T     L++  
Sbjct: 256 DGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVG 315

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +HGF ++RG F  DV   N+++ MY  LG +  A  +F  +  KD +SW  +I+GY
Sbjct: 316 FAKEMHGFAVKRG-FAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +ME  N ++P+  T  S L A + +G L  GIK+H           
Sbjct: 375 EKNGFPDKALEVYALMELHN-VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRY 433

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V VA  L++MY K   ID A+ +F  +     V W+++I+    + +  +AL +FR ML 
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLG 493

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             V+P+ +TF++ L+AC+ +G +  G+   H      GI         ++DL+ + G   
Sbjct: 494 H-VKPNSVTFIAALSACAATGALRSGKE-IHAYVLRCGIGSEGYVPNALLDLYVKCGQTS 551

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            A     ++    D   W  +L     HG   LG +A
Sbjct: 552 YAWAQF-SVHSEKDVVSWNIMLSGFVAHG---LGDIA 584



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 202/423 (47%), Gaps = 8/423 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           +A +   C  G   +AL +L+         D     ++  +C     + +G+        
Sbjct: 68  SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
               F L + N +++M  +FG + HA RVF +M ERDV SWN ++  Y +      A   
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  AG++PD+ T   +      + D R  R VH  ++R G F ++V + NA+V MYA
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG-FGDEVDVLNALVTMYA 243

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I +A  VF+G+ V D ISWN +I G+ +N      +E+F  M E NE+ PN  T  
Sbjct: 244 KCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLE-NEVQPNLMTIT 302

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+  A   +  +    ++H   +K     DV     L+ MY   GR+ DA  +F ++   
Sbjct: 303 SVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK 362

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
            ++ W A+IS +  +G  DKAL  +  M    V PD +T  S L AC+  G +  G +  
Sbjct: 363 DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIK-L 421

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHG 516
           H + +  G   ++     +++++ ++ H+  A    + M  + D   W +++ G C  H 
Sbjct: 422 HELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHR 480

Query: 517 NME 519
           + E
Sbjct: 481 SFE 483


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 398/676 (58%), Gaps = 11/676 (1%)

Query: 32  YTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           +T   VLK C   +NL  G+ IH  ++K G+E + F+   L+ MY + GLA  A  +F  
Sbjct: 315 FTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKT 374

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           +   D   W+A+I+   Q G + E++ +   MRL     +  T+ S+L     + N+  G
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH  + K+G E ++ VSN L+ MY K G +    ++++ M++RD++SWN+ ++     
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 209 ---NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
              + P+T    F  M + G  P++ T +S+    + L D    R VH  I++     ++
Sbjct: 495 GMYDRPLT---IFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ-LDDN 550

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  A++DMYAK   +  A   F  L V+D+ +W  +IT YAQ     +A+  F+ M++
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ 610

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              + PN+ T    L   S + +L  G ++H+ V K+    D+FV + LVDMY KCG ++
Sbjct: 611 -EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCME 669

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A +LF  + R  ++ WN II  +  +GQG+KAL  FR MLDEG+ PD +TF  +L+ACS
Sbjct: 670 EAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV EG+ +F+ M  +FGI P + H  CMVD+ GR G      +FIQ M +  +A IW
Sbjct: 730 HQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIW 789

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             +LGA ++H N+ LG  A+++LFE+  E    Y+L+SNI+A  G+W+ V  VRSL   +
Sbjct: 790 ETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSK 849

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+KK PG S +E N +V  F + + +HP+ ++I+ +L  L  ++ S+ YVP   +VL +V
Sbjct: 850 GVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNV 909

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            E EK+  L  HSERLA+ F +IS+  +  I+IFKNLR+C DCH+  K IS IT +EI+V
Sbjct: 910 GETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVV 969

Query: 686 RDSNRFHHFKDGICSC 701
           RD  RFHHFK+G CSC
Sbjct: 970 RDVRRFHHFKNGACSC 985



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 277/558 (49%), Gaps = 9/558 (1%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            +Q     G+ P+ +T    LKAC     L  GK++H    KLG   D+FV ++L+ +Y 
Sbjct: 200 LFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYA 259

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G   +A K+F  MP ++  +WN +++GY Q G+    L +   M    V  +  T+ +
Sbjct: 260 KCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTT 319

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  CA S N+  G +IH  I+K G E N F+   L++MY+K G+   A+ VF  + + D
Sbjct: 320 VLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD 379

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +V W+++I   +Q      +   F  M+     P+  T+ SL S      + +  +S+H 
Sbjct: 380 IVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            + + G F  DV + NA+V MY K G ++    ++E +  +D+ISWN  ++G    G+  
Sbjct: 440 CVWKYG-FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
             + +F  M E   I PN  T++SIL + S +  +  G ++HA +IKN L  + FV T L
Sbjct: 499 RPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTAL 557

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KC  ++DA   F ++       W  II+ +    QG+KALN+FRQM  EGV+P+ 
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T    L+ CS    +  GQ+  H M  + G    +     +VD++ + G +  A    +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQ-LHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKW 552
            + +R D   W  ++     +G       A   + +  +  + V +  ++S         
Sbjct: 677 AL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735

Query: 553 EGVDEVRSLARDRGLKKT 570
           EG +   S+ RD G+  T
Sbjct: 736 EGKEHFNSMYRDFGISPT 753



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 219/417 (52%), Gaps = 9/417 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L+ C   R+L   K IH  ++K     D  +  SL+++Y +   +  AR +   MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  SW A+I G    G A +++ +  EM+ EG+  +  T+A+ L  C+    +  G  
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H    K GL  +LFV + L+++YAK G +  A ++F  M E++ V+WN ++  Y Q  D
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
                  F +M +  ++ +  TL ++    A   + +  + +H  I++ G +  +  IG 
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG-YEGNEFIGC 353

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            +VDMY+K G+   A  VF+ +   D++ W+ LIT   Q G + E+I++F +M   + + 
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL- 412

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PNQ T  S+L A ++ G L+ G  IHA V K     DV V+  LV MY K G + D   L
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 391 FYQVPRSSSVPWNAIISCHGIH--GQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +  +     + WNA +S  G+H  G  D+ L  F  ML+EG  P+  TF+S+L +CS
Sbjct: 473 YESMVDRDLISWNAYLS--GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/733 (36%), Positives = 402/733 (54%), Gaps = 72/733 (9%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L   ++ H  +LK G   D  +A  LL  Y        A  + D +P  +  S++ +I 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
            + +      AL    +M   G+  D   + S +  CA    +     +H      G + 
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           + FV ++L++MY K   +R A RVFD+M E DVVSW++++AAY +      A   F+ M 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 223 QAGIQPDLL-----------------------------------TLVSLTSIVAQLNDCR 247
            +G+QP+L+                                   T+ S+   V  L D  
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL--------------- 292
               +HG+++++G  + D  + +A++DMY K    +    VF+ +               
Sbjct: 268 MGILIHGYVIKQG-LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 293 --------------PVKD------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
                          +KD      V+SW ++I   +QNG   EA+E+F+ M+    + PN
Sbjct: 327 SRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAG-VKPN 385

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T   +LPA  ++ AL  G   H   ++  +  DV+V + L+DMY KCGRI  +   F 
Sbjct: 386 SVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFD 445

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +P  + V WNA+I+ + +HG+  +A+  F  M   G +PD I+F  +L+ACS SGL  E
Sbjct: 446 GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEE 505

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G  YF+ M  ++GI+  ++HY CMV L  RAG L  A+  I+ MPV PDA +WGALL +C
Sbjct: 506 GSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC 565

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
           R+H N+ LG VA+++LFE++  N G Y+L+SNIYA+ G W  V+ VR + +++GL+K PG
Sbjct: 566 RVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPG 625

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEH 632
            S IEV NKV +   G+++HP+  +I ++L  L+ +MK LGY P+ +FVLQDVEE +KE 
Sbjct: 626 CSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQ 685

Query: 633 ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFH 692
           IL  HSE+LA+ FG++++PP  P+Q+ KNLR+CGDCH   KFIS    REI VRD+NRFH
Sbjct: 686 ILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFH 745

Query: 693 HFKDGICSCGDYW 705
           HFK+G CSCGDYW
Sbjct: 746 HFKEGACSCGDYW 758



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 16/213 (7%)

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           S   +L Q  + HA ++K  L  D  +AT L+  Y       DA  +   VP  +   ++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS-EGQRYFHMMQE 462
            +I       Q   AL+ F QML  G+ PD+    S + AC  +GL + +  R  H +  
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLSALKPARQVHGIAS 141

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
             G          +V ++ +   +  AH     M   PD   W AL+ A    G ++   
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVD--- 197

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
             + RLF    +        S +  N+  W G+
Sbjct: 198 -EAKRLFSEMGD--------SGVQPNLISWNGM 221


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/708 (38%), Positives = 404/708 (57%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +IS  V+ G    A++ F +      L+PD  T   +L AC +   L  G ++H   +K 
Sbjct: 333  LISGLVQQGFSDRALELFTKMQ-RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA 391

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G   D+ +  SLL +Y +      A K F      +   WN M+  Y Q  N  ++ +I 
Sbjct: 392  GMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++EG+  +  T  SIL  C     +  G  IH +++K G + N++V + LI+MYAK+
Sbjct: 452  RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  ALR+  ++ E DVVSW ++IA Y Q +    A   F  M+  GIQ D +   S  
Sbjct: 512  GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A +   R  + +H      G F  D+ I NA++ +YA+ G I  A   FE +  K+ 
Sbjct: 572  SACAGIRALRQGQQIHAQSYAAG-FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ISWN+L++G AQ+G   EA++VF  M    E   N  TY S + A + +  ++QG +IH+
Sbjct: 631  ISWNSLVSGLAQSGYFEEALQVFVRMLR-TEAEVNMFTYGSAISAAASLANIKQGQQIHS 689

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             V+K     +  V+  L+ +Y K G I DA   F  +   + + WNA+I+ +  HG G +
Sbjct: 690  MVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGME 749

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL  F +M   G+ P+H+TFV +L+ACSH GLV EG  YF  M +   + P  +HY C+V
Sbjct: 750  ALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVV 809

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GRAG L  A  +I+ MP+  DA IW  LL AC IH N+E+G  A+  L E++ E+  
Sbjct: 810  DLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA 869

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SNIYA   +W   D  R L +DRG+KK PG S IEV N V  FY G++ HP   +
Sbjct: 870  TYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQ 929

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            IY+ + +L  +   +GYV D   +L + E+ +K+ I   HSE+LAIAFG++S     PI+
Sbjct: 930  IYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIR 989

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCHNW K++S+I+ R IIVRD++RFHHF  G+CSC D+W
Sbjct: 990  VMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 155/541 (28%), Positives = 267/541 (49%), Gaps = 15/541 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-------KKIHCS 53
           MI V+V   + +  V C ++  L  G+ P+ YTF  VLKAC   V G       K++H  
Sbjct: 130 MIHVFV-AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC---VGGDIAFNYVKQVHSR 185

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
               GF+    VA  L+ +Y + G    A+K+F+ + ++D  +W AMISG  Q+G   EA
Sbjct: 186 TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           + +  +M    +   P  ++S+L    +      G  +H  ++K G     +V N L+ +
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y++   +  A R+F  M  RD VS+NS+I+   Q      A   FT MQ+  ++PD +T+
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL S  A +        +H   ++ G    D+I+  +++D+Y+K   + +A   F    
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLTTE 424

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            ++++ WN ++  Y Q    S++ E+F+ M+    I PNQ TY SIL   + +GAL  G 
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGE 483

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  VIK     +V+V + L+DMY K G++  A+ +  ++P    V W A+I+ +  H 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F +M   G++ D+I F S ++AC+    + +GQ+  H      G    L   
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAAGFGADLSIN 602

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             ++ L+ R G +  A+   + +  + + S W +L+      G  E       R+   ++
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEA 661

Query: 534 E 534
           E
Sbjct: 662 E 662



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 150/533 (28%), Positives = 264/533 (49%), Gaps = 12/533 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS   + G   EA+  F      S + P  Y    VL A   +     G+++HC V+K 
Sbjct: 232 MISGLSQNGLEEEAILLFCDMH-ASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKW 290

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  + +V   L+ +Y R      A ++F  M  RD  S+N++ISG  Q G +  AL++ 
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELF 350

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ + +  D ITVAS+L  CA    +  G+ +H + +K G+  ++ +  +L+++Y+K 
Sbjct: 351 TKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC 410

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A + F      ++V WN ++ AY Q ++   +   F  MQ  G+ P+  T  S+ 
Sbjct: 411 ADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL 470

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L        +H  +++ G F  +V + + ++DMYAK G +  A  +   LP  DV
Sbjct: 471 RTCTSLGALYLGEQIHTHVIKTG-FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY Q+ + SEA+++F+ ME       N G + S + A + + ALRQG +IHA
Sbjct: 530 VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG-FASAISACAGIRALRQGQQIHA 588

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +        D+ +   L+ +Y +CGRI +A   F ++   +++ WN+++S     G  ++
Sbjct: 589 QSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE 648

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +ML      +  T+ S ++A +    + +GQ+  H M  + G     +    ++
Sbjct: 649 ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLI 707

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            L+ ++G +  A     +M  R   S W A++     HG      + + RLFE
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVIS-WNAMITGYSQHG----CGMEALRLFE 755



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 250/499 (50%), Gaps = 16/499 (3%)

Query: 21  FTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           F    G+R ++  +  +L+ C    +L +  ++HC + K GF+ +  +  SL+  Y R G
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG 107

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
             + A K+FD+   R   SWN MI  +    +  +   +   M  EG++ +  T A +L 
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 138 VCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
            C   D   + +  +H     +G + +  V+N LI++Y+K G +  A +VF+ +  +D+V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +W ++I+   Q+     A   F  M  + I P    L S+ S   ++        +H  +
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++ G F  +  + N +V +Y++   + SA  +F  +  +D +S+N+LI+G  Q G +  A
Sbjct: 288 IKWG-FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 317 IEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           +E+F +M  +C  + P+  T  S+L A + VGAL +G+++H+  IK  +  D+ +   L+
Sbjct: 347 LELFTKMQRDC--LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL 404

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           D+Y KC  ++ A   F      + V WN ++  +G       +   FRQM  EG+ P+  
Sbjct: 405 DLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQF 464

Query: 436 TFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNF 492
           T+ S+L  C+  G +  G++ + H+++  F     L  Y C  ++D++ + G L +A   
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGF----QLNVYVCSVLIDMYAKYGQLALALRI 520

Query: 493 IQNMPVRPDASIWGALLGA 511
           ++ +P   D   W A++  
Sbjct: 521 LRRLP-EDDVVSWTAMIAG 538



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 186/399 (46%), Gaps = 5/399 (1%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           + +++ M   GV  +      +L  C  S ++   + +H  I K G +    + ++L++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y + G    A++VFD+   R V SWN +I  +            F  M   GI P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 234 VSLTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             +       +   N  + VH      G F    ++ N ++D+Y+K G I SA  VF  +
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYG-FDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            +KD+++W  +I+G +QNGL  EAI +F  M   +EI P      S+L A + +     G
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELG 280

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            ++H  VIK     + +V   LV +Y +  ++  A  +F  +     V +N++IS     
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G  D+AL  F +M  + ++PD IT  SLL+AC+  G + +G +  H    + G+   +  
Sbjct: 341 GFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIIL 399

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G ++DL+ +   +  AH F        +  +W  +L A
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA 437


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/674 (39%), Positives = 405/674 (60%), Gaps = 8/674 (1%)

Query: 38  LKACRNLVD---GKKIHCS-VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           L++C    D   G+ +H   VL        F+A  L+ MY        A +LFD MP  +
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SW  ++SG  Q+    +AL     M   G+      ++S     A      +G  +H 
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHC 143

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             V+ G +  LFV++NL +MY+K G++  A RVFDQM ++D V+W ++I  Y ++ +   
Sbjct: 144 VGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEA 203

Query: 214 AHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
           A   F  M++ G +  D   L S+ S    L D   +R++H  +M+ G F ++V + NA+
Sbjct: 204 AVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSG-FEQEVAVRNAL 262

Query: 273 VDMYAKLGIINSACAVFE-GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            DMYAK   +++A  V +      +V+S  +LI GY +     +A+ +F  +     + P
Sbjct: 263 TDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRR-QGVEP 321

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N+ T+ S++   +    L QG ++HA VIK  L  D FV++ L+DMYGKCG I  ++ LF
Sbjct: 322 NEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLF 381

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            ++   + + WNA I+    HG G +A+  F +M   G+RP+HITFVSLLTACSH+GLV 
Sbjct: 382 KEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVD 441

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG +YF+ M++  GI+P  +HY C++D++GRAG L  A  FI  MPV+P+A  W +LLGA
Sbjct: 442 EGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGA 501

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CR+ GN ELG +A+D + +++ +N G +V +S IYA++G+WE V  VR L RD  +KK P
Sbjct: 502 CRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLP 561

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G+S ++ N K  +F + + +HP+ EKIY++L  L  ++K  GYVPD  F+  ++E+  K+
Sbjct: 562 GFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQ 621

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
            IL  HSER+A+AF +IS P   PI + KNLR+C DCH+  KFIS++  R+IIVRD++RF
Sbjct: 622 RILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRF 681

Query: 692 HHFKDGICSCGDYW 705
           HHF  G CSCGDYW
Sbjct: 682 HHFVKGGCSCGDYW 695



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           L L +      +  D R  R +H  ++  G       + N ++ MY+    + SA  +F+
Sbjct: 18  LRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFD 77

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P  +++SW TL++G  QN +  +A+  F  M     + P Q    S   A + + A  
Sbjct: 78  AMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLV-PTQFALSSAARAAAALAARH 136

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G ++H   ++     ++FVA+ L DMY K G + +A  +F Q+P+  +V W A+I  + 
Sbjct: 137 AGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYA 196

Query: 411 IHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG--QRYFHMMQEEFGIK 467
            +G  + A+  FR M  EG V  D     S+L+A   SG + +G   R  H    + G +
Sbjct: 197 KNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA---SGGLKDGWLARAIHSCVMKSGFE 253

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
             +     + D++ +A  +  A   ++
Sbjct: 254 QEVAVRNALTDMYAKAADMDNAARVVK 280



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  Y+    + +A+  F +     G+ P+ +TF  ++K C     L  G ++H  V+K 
Sbjct: 294 LIDGYIETDCIEKALLMFIELR-RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKT 352

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D FV+++LL MY + GL +++ +LF ++      +WNA I+   Q G+  EA+   
Sbjct: 353 SLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAF 412

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
           D M   G+  + IT  S+L  C+ +  +  GL  + Y +K  HG+E      + +I+MY 
Sbjct: 413 DRMTSSGIRPNHITFVSLLTACSHAGLVDEGLK-YFYSMKDHHGIEPKGEHYSCIIDMYG 471

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL- 233
           + G +  A +   +M ++ +   W S++ A     +          M +  ++PD   + 
Sbjct: 472 RAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMK--LEPDNTGVH 529

Query: 234 VSLTSIVAQLNDCRNSRSVHGFI 256
           VSL+ I A L    + ++V   +
Sbjct: 530 VSLSGIYASLGQWEDVKAVRKLM 552


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/704 (38%), Positives = 403/704 (57%), Gaps = 5/704 (0%)

Query: 1    MISVYVRCGRLSEAVDCFY--QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLG 58
            MIS Y   G   E++ CF+  +            +   V  +  NL  G+ IH  V+KLG
Sbjct: 369  MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 428

Query: 59   FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
             + +V +  +LL +Y   G +  A  +F  M  RD  SWN+M++ Y Q G  ++ L IL 
Sbjct: 429  LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILA 488

Query: 119  EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            E+   G  M+ +T AS L  C+  + ++   ++H  I+  G    L V N L+ MY K G
Sbjct: 489  ELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLG 548

Query: 179  MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            MM  A +V   M + D V+WN++I  + ++ +P  A   +  +++ GI  + +T+VS+  
Sbjct: 549  MMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLG 608

Query: 239  IVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +  +D  ++   +H  I+  G F  D  + N+++ MYAK G +NS+  +F+GL  K  
Sbjct: 609  ACSAPDDLLKHGMPIHAHIVLTG-FESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSP 667

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            I+WN ++   A +G   EA+++F  M     +N +Q ++   L A +++  L +G ++H 
Sbjct: 668  ITWNAMVAANAHHGCGEEALKIFGEMRNVG-VNLDQFSFSGGLAATANLAVLEEGQQLHG 726

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             VIK     D+ V    +DMYGKCG + D + +  Q    S + WN +IS    HG   K
Sbjct: 727  LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQK 786

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            A   F +ML  G +PDH+TFVSLL+AC+H GLV EG  Y+  M  EFG+ P ++H  C++
Sbjct: 787  ARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCII 846

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GR+G L  A  FI+ MPV P+   W +LL ACRIHGN+EL    ++ L E+D  +  
Sbjct: 847  DLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS 906

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL SN+ A  GKWE V+ +R       +KK P  S +++ +KV  F  G + HP+  +
Sbjct: 907  AYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASR 966

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            I  +L  L    K  GYVPD SF L D++E++KE+ L +HSERLA+AFG+I++P  S ++
Sbjct: 967  ISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLR 1026

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
            IFKNLRVCGDCH+  KF+S I  R+I++RD  RFHHF  G CSC
Sbjct: 1027 IFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/522 (29%), Positives = 277/522 (53%), Gaps = 12/522 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S YVR G   EAV  F Q     G+ P+ +    ++ AC        +G ++H  V+K
Sbjct: 166 MLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 224

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV+V  +L+H Y   GL   A+KLF++MP  +  SW +++ GY  SGN  E L++
Sbjct: 225 TGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNV 284

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR EGVS +  T A++   C   ++ + G  +  +I+++G E ++ V+N+LI+M++ 
Sbjct: 285 YQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSS 344

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  +  A  VFD M E D++SWN++I+AY        +   F  M+    + +  TL SL
Sbjct: 345 FSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSL 404

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S+ + +++ +  R +HG +++ G    +V I N ++ +Y++ G    A  VF+ +  +D
Sbjct: 405 LSVCSSVDNLKWGRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERD 463

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN+++  Y Q+G   + +++   + +  ++  N  T+ S L A S+   L +   +H
Sbjct: 464 LISWNSMMACYVQDGKCLDGLKILAELLQMGKV-MNHVTFASALAACSNPECLIESKIVH 522

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A +I       + V   LV MYGK G + +A  +   +P+   V WNA+I  H  + + +
Sbjct: 523 ALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPN 582

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSH-SGLVSEGQR-YFHMMQEEFGIKPHLKHYG 474
           +A+  ++ + ++G+  ++IT VS+L ACS    L+  G   + H++   F    ++K+  
Sbjct: 583 EAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKN-- 640

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++ ++ + G L  + N+I +         W A++ A   HG
Sbjct: 641 SLITMYAKCGDLN-SSNYIFDGLGNKSPITWNAMVAANAHHG 681



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 240/466 (51%), Gaps = 5/466 (1%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +H   +       +F   +L++MY +FG    AR +FD+M  R+  SW+ M+SGY +
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLF 165
            G   EA+ +  +M   GV  +   VAS++  C+RS  +   G  +H ++VK G+  +++
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V   L++ Y   G++ +A ++F++M + +VVSW S++  Y  S +P      +  M+Q G
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           +  +  T  ++TS    L D      V G I++ G F + V + N+++ M++    +  A
Sbjct: 293 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEA 351

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
           C VF+ +   D+ISWN +I+ YA +GL  E++  F  M   +    N  T  S+L   S 
Sbjct: 352 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN-ETNSTTLSSLLSVCSS 410

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           V  L+ G  IH  V+K  L  +V +   L+ +Y + GR +DA  +F  +     + WN++
Sbjct: 411 VDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSM 470

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ++C+   G+    L    ++L  G   +H+TF S L ACS+   + E  +  H +    G
Sbjct: 471 MACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAG 529

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
               L     +V ++G+ G +  A   +Q MP +PD   W AL+G 
Sbjct: 530 FHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 185/371 (49%), Gaps = 6/371 (1%)

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           ++G  +H + +   +   +F +N LINMY+KFG + HA  VFD+M  R+  SW+++++ Y
Sbjct: 111 MAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 170

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR-SVHGFIMRRGWFME 264
            +      A G F  M   G++P+   + SL +  ++     +    VHGF+++ G  + 
Sbjct: 171 VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTG-ILG 229

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV +G A+V  Y  +G++ +A  +FE +P  +V+SW +L+ GY+ +G   E + V+Q M 
Sbjct: 230 DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 289

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   ++ NQ T+ ++  +   +     G ++   +I+      V VA  L+ M+     +
Sbjct: 290 Q-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 348

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           ++A  +F  +     + WNA+IS +  HG   ++L  F  M       +  T  SLL+ C
Sbjct: 349 EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 408

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           S    +  G R  H +  + G+  ++     ++ L+  AG    A    Q M  R D   
Sbjct: 409 SSVDNLKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTER-DLIS 466

Query: 505 WGALLGACRIH 515
           W +++ AC + 
Sbjct: 467 WNSMM-ACYVQ 476



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L  +S + +   G  +HA  I   +   +F    L++MY K G I+ A  +F ++   + 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
             W+ ++S +   G  ++A+  F QM   GV P+     SL+TACS SG +++     H 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
              + GI   +     +V  +G  G +  A    + MP     S W +L+      GN
Sbjct: 221 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVS-WTSLMVGYSDSGN 277


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/694 (39%), Positives = 399/694 (57%), Gaps = 18/694 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+RPD  TF   L +C    +L DG +IH  V+    E D  V+ +LL+MY + G  + A
Sbjct: 53  GVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHA 112

Query: 83  RKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           +++F  M   R+  SW+ M   +   GN  EAL     M L G+      + +IL  C+ 
Sbjct: 113 KRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSS 172

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWN 199
              +  G +IH  I   G E  L V+N ++ MY + G +  A +VFD M E  RDVVSWN
Sbjct: 173 PALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWN 232

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            +++ Y  ++    A   +  MQ   ++PD +T VSL S  +   D    R +H  I+  
Sbjct: 233 IMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVN- 288

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
               ++VI+GNA+V MYAK G    A AVF+ +  + +ISW T+I+ Y +  L +EA  +
Sbjct: 289 DELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHL 348

Query: 320 FQMMEECNE------INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           FQ M E  +      + P+   +V+IL A + V AL QG  +  +     L  D  V T 
Sbjct: 349 FQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTA 408

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
           +V++YGKCG I++A  +F  V     V  WNA+I+ +   GQ  +AL  F +M  EGVRP
Sbjct: 409 VVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRP 468

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           D  +FVS+L ACSH+GL  +G+ YF  M  E+  +   ++H+GC+ DL GR G L  A  
Sbjct: 469 DSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEE 528

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           F++ +PV+PDA  W +LL ACR H +++     +++L  ++      YV +SNIYA + K
Sbjct: 529 FLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQK 588

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W  V +VR    ++G+KK  G S+IE+   +  F TG+  HP+  +I +EL  L ++MK 
Sbjct: 589 WHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKE 648

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GYVPD   VL  V+E EKE +L SHSERLAIA G+IS+P  +P+++ KNLRVC DCH  
Sbjct: 649 CGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTA 708

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           TK IS+I  R+I+VRD  RFH FKDG CSC DYW
Sbjct: 709 TKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 251/514 (48%), Gaps = 43/514 (8%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY        A+  FD +  R+  SW  +++ +  SG + E L  L+ MR +GV  D +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
             + L  C   +++  G+ IH  +V   LE +  VSN L+NMY K G + HA RVF +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 192 E-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
             R+V+SW+ +  A+    +   A   F  M   GI+     +V++ S  +     ++ R
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLITGYA 308
            +H  I   G F  ++++ NAV+ MY + G +  A  VF+ +   ++DV+SWN +++ Y 
Sbjct: 181 MIHSCIALSG-FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            N    +AI+++Q M    ++ P++ TYVS+L A S    +  G  +H +++ + L  +V
Sbjct: 240 HNDRGKDAIQLYQRM----QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD- 427
            V   LV MY KCG   +A ++F ++ + S + W  IIS +       +A + F+QML+ 
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 428 ------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVD 478
                 + V+PD + FV++L AC+    + +G+    M+ E+    G+         +V+
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQGK----MVSEQAASCGLSSDKAVGTAVVN 411

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLG----------ACRIHGNMELGAVASDRL 528
           L+G+ G +  A      +  RPD  +W A++           A ++   ME+  V  D  
Sbjct: 412 LYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSF 471

Query: 529 FEV-----------DSENVGYYVLMSNIYANVGK 551
             V           + +   Y+  M+  Y NV +
Sbjct: 472 SFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTR 505


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/686 (38%), Positives = 395/686 (57%), Gaps = 14/686 (2%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   VL  C   R +  GK +H   +KL  + ++ +  +L+ MY + G    A+ +
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 99

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSD 143
           F     ++  SWN M+ G+   G+     D+L +M    E V  D +T+ + +PVC    
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 159

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            + S   +H Y +K    +N  V+N  +  YAK G + +A RVF  +  + V SWN++I 
Sbjct: 160 FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 219

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + QSNDP  +      M+ +G+ PD  T+ SL S  ++L   R  + VHGFI+R  W  
Sbjct: 220 GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN-WLE 278

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ +  +V+ +Y   G + +  A+F+ +  K ++SWNT+ITGY QNG    A+ VF+ M
Sbjct: 279 RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 338

Query: 324 EECNEINPNQGTYVSILPAY---SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
                +   Q   +S++P +   S + +LR G + HA  +K+ L  D F+A  L+DMY K
Sbjct: 339 V----LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 394

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
            G I  +  +F  +   S+  WNA+I  +GIHG   +A+  F +M   G  PD +TF+ +
Sbjct: 395 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 454

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI-QNMPVR 499
           LTAC+HSGL+ EG RY   M+  FG+KP+LKHY C++D+ GRAG L  A   + + M   
Sbjct: 455 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 514

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
            D  IW +LL +CRIH N+E+G   + +LFE++ E    YVL+SN+YA +GKWE V +VR
Sbjct: 515 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 574

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
               +  L+K  G S IE+N KV  F  G R    +E+I      L  K+  +GY PD  
Sbjct: 575 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 634

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            V  D+ E+EK   L  HSE+LA+ +G+I +   + I+++KNLR+C DCHN  K IS++ 
Sbjct: 635 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 694

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           EREI+VRD+ RFHHFK+G+CSCGDYW
Sbjct: 695 EREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 228/439 (51%), Gaps = 26/439 (5%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLE---GVSM-DPITVASILPVCARSDNILS 147
           R+  SWN+MI  +  +G + E+  +L EM  E   G  M D  T+ ++LPVCAR   I  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H + VK  L+  L ++N L++MY+K G + +A  +F     ++VVSWN+++  +  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 208 SNDPITAHGFFTTMQQ--AG---IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             D    HG F  ++Q  AG   ++ D +T+++   +    +   + + +H + +++  F
Sbjct: 121 EGD---THGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE-F 176

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           + + ++ NA V  YAK G ++ A  VF G+  K V SWN LI G+AQ+     +++    
Sbjct: 177 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 236

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M + + + P+  T  S+L A S + +LR G ++H  +I+N L  D+FV   ++ +Y  CG
Sbjct: 237 M-KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 295

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +    +LF  +   S V WN +I+ +  +G  D+AL  FRQM+  G++   I+ + +  
Sbjct: 296 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 355

Query: 443 ACS-----HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           ACS       G  +      H+++++  I   L      +D++ + G +  +      + 
Sbjct: 356 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSL------IDMYAKNGSITQSSKVFNGLK 409

Query: 498 VRPDASIWGALLGACRIHG 516
            +  AS W A++    IHG
Sbjct: 410 EKSTAS-WNAMIMGYGIHG 427



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 175/361 (48%), Gaps = 28/361 (7%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           ++D   Q  + SGL PD +T   +L AC   ++L  GK++H  +++   E D+FV  S+L
Sbjct: 230 SLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVL 288

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI 130
            +Y   G     + LFD M  +   SWN +I+GY Q+G    AL +  +M L G+ +  I
Sbjct: 289 SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 348

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           ++  +   C+   ++  G   H Y +KH LE + F++ +LI+MYAK G +  + +VF+ +
Sbjct: 349 SMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGL 408

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            E+   SWN++I  Y        A   F  MQ+ G  PD LT + +      L  C +S 
Sbjct: 409 KEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV------LTACNHSG 462

Query: 251 SVHGFI-----MRRGWFMEDVIIGNA-VVDMYAKLGIINSACAVF--EGLPVKDVISWNT 302
            +H  +     M+  + ++  +   A V+DM  + G ++ A  V   E     DV  W +
Sbjct: 463 LIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKS 522

Query: 303 LITG--YAQNGLASE--AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           L++     QN    E  A ++F++  E  E       YV +   Y+ +G      K+  R
Sbjct: 523 LLSSCRIHQNLEMGEKVAAKLFELEPEKPE------NYVLLSNLYAGLGKWEDVRKVRQR 576

Query: 359 V 359
           +
Sbjct: 577 M 577


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/715 (38%), Positives = 418/715 (58%), Gaps = 15/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV----DGKKIHCSVLK 56
           +IS Y + G   +A     +     G  P+ + F   ++AC+  +     G+++H   ++
Sbjct: 72  LISGYTQNGMPEDACGVLKEMIF-EGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIR 130

Query: 57  LGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
            G  +  V V   L++MY + G  + AR +F  M  +DS SWN+MI+G  Q+    +A+ 
Sbjct: 131 TGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVK 190

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             + MR  G+      + S L  CA    IL G   H   +K GL+ ++ VSN L+ +YA
Sbjct: 191 SYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYA 250

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLV 234
           +   +    +VF  M+ERD VSWN++I A   S   ++ A   F  M +AG  P+ +T +
Sbjct: 251 ETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFI 310

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           +L + V+ L+  + S  +H  I++     +D  I NA++  Y K G + +   +F  +  
Sbjct: 311 NLLATVSSLSTSKLSHQIHALILKYN-VKDDNAIENALLACYGKSGEMENCEEIFSRMSE 369

Query: 295 K-DVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           + D +SWN++I+GY  N L  +A++ V+ MM+    ++    T+ ++L A + V  L  G
Sbjct: 370 RRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDC--FTFATVLSACATVATLECG 427

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           +++HA  I+ CL  DV + + LVDMY KCGRID A   F  +P  +   WN++IS +  H
Sbjct: 428 MEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARH 487

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G GD AL  F +M   G  PDHITFV +L+ACSH GLV EG  YF  M E +G+ P ++H
Sbjct: 488 GHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEH 547

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NMELGAVASDRLFE 530
           Y CMVDL GRAG L    NFI  MP++P+  IW  +LGA CR +G   ELG  A++ LF 
Sbjct: 548 YSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFN 607

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +D +N   YVL+SN+YA+ GKWE +   R   R+  +KK  G S + + + V +F  G+ 
Sbjct: 608 MDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDN 667

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +HP+   IY +L+ L  K++  GYVP   F L D+E + KE +L+ HSE+LA+AF +++ 
Sbjct: 668 SHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTR 726

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
               PI+I KNLRVCGDCH+  K+IS++ +R I++RDSNRFHHF+DG CSC DYW
Sbjct: 727 NSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 248/479 (51%), Gaps = 14/479 (2%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           D    H +VLK GF+ D+F+  +L+++Y R G    ARKLFD+MP R+  +W  +ISGY 
Sbjct: 18  DANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYT 77

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL---SGLLIHLYIVKHGL-E 161
           Q+G   +A  +L EM  EG   +     S +  C  S  +L    G  +H Y ++ GL +
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQES--MLWRRKGRQVHGYAIRTGLND 135

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             + V N LINMYAK G + HA  VF  M+++D VSWNS+I   +Q+     A   + +M
Sbjct: 136 AKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSM 195

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           ++ G+ P    L+S  S  A L      +  HG  ++ G  M DV + N ++ +YA+   
Sbjct: 196 RKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDM-DVSVSNTLLALYAETSR 254

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLA-SEAIEVFQMMEECNEINPNQGTYVSIL 340
           +     VF  +  +D +SWNT+I   A +G + SEAIEVF  M      +PN+ T++++L
Sbjct: 255 LAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAG-WSPNRVTFINLL 313

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS 399
              S +   +   +IHA ++K  +  D  +   L+  YGK G +++   +F ++  R   
Sbjct: 314 ATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDE 373

Query: 400 VPWNAIISCHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           V WN++IS + IH +   KA++    M+  G R D  TF ++L+AC+    +  G    H
Sbjct: 374 VSWNSMISGY-IHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGME-VH 431

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
                  ++  +     +VD++ + G +  A  F   MPVR   S W +++     HG+
Sbjct: 432 ACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYS-WNSMISGYARHGH 489


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/709 (37%), Positives = 405/709 (57%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKL 57
           MI  Y +  +  EA + + +    SG++PD  TF  +L    +    K   +IH  +++ 
Sbjct: 114 MIGGYSQNNQPKEAFNLYTEMC-RSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRF 172

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   + V  SL+  YC+    ++A +LF +MP +DS S+N MI+GY + G   EAL + 
Sbjct: 173 GFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLF 232

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR         T A++L +   S++++ G  IH   +K    +++FV+N L++ Y+K 
Sbjct: 233 MQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKH 292

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A  +FD+M E D VS+N II  Y  +     +   F  +Q            ++ 
Sbjct: 293 DYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATML 352

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+ A   +    R  H   +      E V +GNA+VDMYAK      A  +F  L  ++ 
Sbjct: 353 SVAAIELNLSMGRQTHAQAVVTTAVSE-VQVGNALVDMYAKCEKFEDANRIFANLAYRNS 411

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q G   EA+++F+ M   N ++ +Q T+ S L A +++ ++  G ++H+
Sbjct: 412 VPWTAIISIYVQKGFHEEALKMFKEMNREN-VHGDQATFASTLKASANLASVSLGKQLHS 470

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VI+  L   VF  + LVDMY  CG + DA+ +F ++P  + V WNA+IS +  +G  + 
Sbjct: 471 SVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEA 530

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
             + F  M++ G+ PD ++F+S+LTACSH GLV +   YF+ M + + + P  KHY  M+
Sbjct: 531 TFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMI 590

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D+  R+G    A N I  MP  PD  +W ++L +CRIH N +L   A+D+LF++D+  + 
Sbjct: 591 DVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDA 650

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  GKWE   +V+   R+RG+KK   +S +E++++V +F   +RTHP+ E
Sbjct: 651 AAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTE 710

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  ++ +L   M   GY PD S  LQ+V+E+ K   L  HSERLAIAF +I++P  SPI
Sbjct: 711 QIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPI 770

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I KNLR C DCH   K IS+I  REI VRDS+RFHHF+DG CSCGDYW
Sbjct: 771 IIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 219/438 (50%), Gaps = 4/438 (0%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR+LF+ M  R+  SW  MI GY Q+    EA ++  EM   GV  D IT A++L     
Sbjct: 96  ARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDD 155

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           +  +   L IH +I++ G   +L V N+L++ Y K   +  A ++F +M  +D VS+N +
Sbjct: 156 TTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVM 215

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y +      A   F  M+    QP   T  ++  +     D    + +HG  ++   
Sbjct: 216 ITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTS- 274

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           ++ D+ + NA++D Y+K   I+ A  +F+ +P  D +S+N +ITGYA NG   ++ ++F+
Sbjct: 275 YVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFK 334

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            ++  +  +     + ++L   +    L  G + HA+ +      +V V   LVDMY KC
Sbjct: 335 RLQGTS-FDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKC 393

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            + +DA  +F  +   +SVPW AIIS +   G  ++AL  F++M  E V  D  TF S L
Sbjct: 394 EKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTL 453

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            A ++   VS G++  H      G+   +     +VD++   G +  A    + MP R +
Sbjct: 454 KASANLASVSLGKQ-LHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDR-N 511

Query: 502 ASIWGALLGACRIHGNME 519
              W AL+ A   +G+ E
Sbjct: 512 IVCWNALISAYSQNGDAE 529



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 169/343 (49%), Gaps = 4/343 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N +++ Y K   +  A  +F+ M  R+ VSW  +I  Y Q+N P  A   +T M ++G++
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD +T  +L S        +    +H  I+R G F   +I+ N++VD Y K   ++ A  
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFG-FSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  +P KD +S+N +ITGY + G   EA+++F  M    +  P+  T+ ++L       
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNM-DFQPSGFTFAAMLGMSVGSE 258

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            +  G +IH   IK    +D+FVA  L+D Y K   ID A +LF ++P    V +N II+
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  +GQ +K+ + F+++        +  F ++L+  +    +S G R  H         
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMG-RQTHAQAVVTTAV 377

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             ++    +VD++ +      A+    N+  R ++  W A++ 
Sbjct: 378 SEVQVGNALVDMYAKCEKFEDANRIFANLAYR-NSVPWTAIIS 419



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 31/246 (12%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN----------- 330
           I  A  +F+ +P ++  S N +++GY ++     A E+F+ M   NE++           
Sbjct: 62  IAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQN 121

Query: 331 -------------------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
                              P+  T+ ++L  +     L++ ++IH+ +I+      + V 
Sbjct: 122 NQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVF 181

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             LVD Y K   +D A  LF ++P   SV +N +I+ +  +G  ++AL  F QM +   +
Sbjct: 182 NSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQ 241

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P   TF ++L     S  V  GQ+  H +  +      +     ++D + +  ++ +A N
Sbjct: 242 PSGFTFAAMLGMSVGSEDVIFGQQ-IHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKN 300

Query: 492 FIQNMP 497
               MP
Sbjct: 301 LFDEMP 306


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/607 (41%), Positives = 375/607 (61%), Gaps = 3/607 (0%)

Query: 100 MISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           MISG+ ++    +++ +  +M L  G   D  TV ++LP  A    +  G+ I    +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G   ++ +   LI++++K G +  A  +F ++ ++D++S N++I+ +  + +   +   F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             +  +G +    T+V L  + +          +HGF ++ G  +    +  A+  +Y +
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLG-IVSHSSVSTALTTVYCR 179

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
           L  +  A  +F+    K + SWN +I+G  QNGL   AI +FQ M++ N +NPN  T  S
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQK-NNVNPNPVTVTS 238

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           IL A + +GAL  G  +H+ +  N    +V+V+T L+DMY KCG I  A  LF  +P  +
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V WNA+IS +G+HG G +AL  F  ML   V+P  +TF+S+L ACSH+GLV EG   FH
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M  +FG +P  +HY CMVD+ GRAG L  A  FI+ MPV P   +WGALLGAC IH + 
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            L  VAS++LFE+D EN+GYYVLMSNIY+   K+     VR +A+ + L KTPG + IE+
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
                +F +G+++HP+ + IY EL  LT KM   G+  + + VL D+EE+EKE  +  HS
Sbjct: 479 GQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHS 538

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIAFG+IS+ P + I+I KNLRVC DCHNWTKF+S+IT+R I+VRD+NRFHHFKDG+
Sbjct: 539 EKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGL 598

Query: 699 CSCGDYW 705
           CSCGDYW
Sbjct: 599 CSCGDYW 605



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 225/448 (50%), Gaps = 11/448 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS +V+     +++  F    L +G R D  T   VL A   L +   G +I C  +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   V +   L+ ++ + G   +AR LF ++  +D  S NAMISG+  +G   +++ + 
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E+   G  +   T+  ++PV +   +      IH + VK G+  +  VS  L  +Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M  A ++FD+  E+ + SWN++I+   Q+     A   F TMQ+  + P+ +T+ S+ 
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  AQ+        VH  I +   F  +V +  A++DMYAK G I  A  +F+ +P K+ 
Sbjct: 241 SACAQIGALSLGEWVHSLI-KSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN +I+GY  +G   EA+++F  M   + + P   T++S+L A SH G +++G  I  
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLS-SSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 358 RVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQ 414
            ++ +   F+       C+VD+ G+ G++  A+     +P     P W A++    IH  
Sbjct: 359 TMVHD-FGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKD 417

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLT 442
            + A     ++ +  + P++I +  L++
Sbjct: 418 TNLAHVASEKLFE--LDPENIGYYVLMS 443



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 21/368 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYT---FPPVLKACRNLVDGKKIHCSVLKL 57
           MIS +   G   ++V  F +  L+SG R    T     PV     +      IH   +KL
Sbjct: 103 MISGFTCNGETEDSVRLFKEL-LSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKL 161

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G      V+ +L  +YCR      AR+LFD+   +   SWNAMISG  Q+G    A+ + 
Sbjct: 162 GIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLF 221

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+   V+ +P+TV SIL  CA+   +  G  +H  I  +  E N++VS  LI+MYAK 
Sbjct: 222 QTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKC 281

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD M E++ V+WN++I+ Y        A   F  M  + ++P  LT +S+ 
Sbjct: 282 GSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVL 341

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +     +    +   ++    F         +VD+  + G +  A    + +PV+  
Sbjct: 342 YACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPG 401

Query: 298 IS-WNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYV------SILPAYSHV 346
              W  L+     +    LA  A       E+  E++P N G YV      S+   Y   
Sbjct: 402 PPVWGALLGACMIHKDTNLAHVA------SEKLFELDPENIGYYVLMSNIYSVERKYPQA 455

Query: 347 GALRQGIK 354
            ++RQ  K
Sbjct: 456 ASVRQVAK 463


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/686 (38%), Positives = 395/686 (57%), Gaps = 14/686 (2%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   VL  C   R +  GK +H   +KL  + ++ +  +L+ MY + G    A+ +
Sbjct: 290 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 349

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSD 143
           F     ++  SWN M+ G+   G+     D+L +M    E V  D +T+ + +PVC    
Sbjct: 350 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 409

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            + S   +H Y +K    +N  V+N  +  YAK G + +A RVF  +  + V SWN++I 
Sbjct: 410 FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 469

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + QSNDP  +      M+ +G+ PD  T+ SL S  ++L   R  + VHGFI+R  W  
Sbjct: 470 GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR-NWLE 528

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ +  +V+ +Y   G + +  A+F+ +  K ++SWNT+ITGY QNG    A+ VF+ M
Sbjct: 529 RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 588

Query: 324 EECNEINPNQGTYVSILPAY---SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
                +   Q   +S++P +   S + +LR G + HA  +K+ L  D F+A  L+DMY K
Sbjct: 589 V----LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
            G I  +  +F  +   S+  WNA+I  +GIHG   +A+  F +M   G  PD +TF+ +
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 704

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI-QNMPVR 499
           LTAC+HSGL+ EG RY   M+  FG+KP+LKHY C++D+ GRAG L  A   + + M   
Sbjct: 705 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 764

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
            D  IW +LL +CRIH N+E+G   + +LFE++ E    YVL+SN+YA +GKWE V +VR
Sbjct: 765 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
               +  L+K  G S IE+N KV  F  G R    +E+I      L  K+  +GY PD  
Sbjct: 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 884

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            V  D+ E+EK   L  HSE+LA+ +G+I +   + I+++KNLR+C DCHN  K IS++ 
Sbjct: 885 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 944

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           EREI+VRD+ RFHHFK+G+CSCGDYW
Sbjct: 945 EREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 277/533 (51%), Gaps = 29/533 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y R     E ++ F +   T+ L PD +T+P V+KAC  + D   G  +H  V+K 
Sbjct: 157 VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 216

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +L+  Y   G    A +LFD MP R+  SWN+MI  +  +G + E+  +L
Sbjct: 217 GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 276

Query: 118 DEMRLE---GVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            EM  E   G  M D  T+ ++LPVCAR   I  G  +H + VK  L+  L ++N L++M
Sbjct: 277 GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 336

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--AG---IQP 228
           Y+K G + +A  +F     ++VVSWN+++  +    D    HG F  ++Q  AG   ++ 
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD---THGTFDVLRQMLAGGEDVKA 393

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D +T+++   +    +   + + +H + +++  F+ + ++ NA V  YAK G ++ A  V
Sbjct: 394 DEVTILNAVPVCFHESFLPSLKELHCYSLKQE-FVYNELVANAFVASYAKCGSLSYAQRV 452

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F G+  K V SWN LI G+AQ+     +++    M + + + P+  T  S+L A S + +
Sbjct: 453 FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKS 511

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           LR G ++H  +I+N L  D+FV   ++ +Y  CG +    +LF  +   S V WN +I+ 
Sbjct: 512 LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITG 571

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-----HSGLVSEGQRYFHMMQEE 463
           +  +G  D+AL  FRQM+  G++   I+ + +  ACS       G  +      H+++++
Sbjct: 572 YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 631

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             I   L      +D++ + G +  +      +  +  AS W A++    IHG
Sbjct: 632 AFIACSL------IDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHG 677



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 207/408 (50%), Gaps = 12/408 (2%)

Query: 47  GKKIHCSVL-KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+KIH  V        D  +   ++ MY   G  + +R +FD +  ++   WNA+IS Y 
Sbjct: 103 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162

Query: 106 QSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           ++    E L+   EM     +  D  T   ++  CA   ++  GL +H  +VK GL  ++
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 222

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF---TTM 221
           FV N L++ Y   G +  AL++FD M ER++VSWNS+I  +  S++  +   F      M
Sbjct: 223 FVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF--SDNGFSEESFLLLGEMM 280

Query: 222 QQAG---IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
           ++ G     PD+ TLV++  + A+  +    + VHG+ ++     +++++ NA++DMY+K
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLR-LDKELVLNNALMDMYSK 339

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYV 337
            G I +A  +F+    K+V+SWNT++ G++  G      +V  QM+    ++  ++ T +
Sbjct: 340 CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 399

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           + +P   H   L    ++H   +K    ++  VA   V  Y KCG +  A  +F+ +   
Sbjct: 400 NAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK 459

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +   WNA+I  H        +L+   QM   G+ PD  T  SLL+ACS
Sbjct: 460 TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 6/278 (2%)

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D    R +H  +        D ++   ++ MYA  G  + +  VF+ L  K++  WN +
Sbjct: 98  KDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAV 157

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+ Y++N L  E +E F  M    ++ P+  TY  ++ A + +  +  G+ +H  V+K  
Sbjct: 158 ISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTG 217

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DVFV   LV  YG  G + DA+ LF  +P  + V WN++I     +G  +++     
Sbjct: 218 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 277

Query: 424 QMLDE----GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           +M++E       PD  T V++L  C+    +  G +  H    +  +   L     ++D+
Sbjct: 278 EMMEENGDGAFMPDVATLVTVLPVCAREREIGLG-KGVHGWAVKLRLDKELVLNNALMDM 336

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + + G +  A   I  M    +   W  ++G     G+
Sbjct: 337 YSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGGFSAEGD 373


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 422/717 (58%), Gaps = 25/717 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  +  CG   EAV  FY   + +G++ D +T+P V+K+     +L +GKKIH  V+KL
Sbjct: 101 MIKGFTSCGLYIEAVQ-FYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKL 159

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DV+V  SL+ +Y + G A  A K+F++MP RD  SWN+MISGY   G+   +L + 
Sbjct: 160 GFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLF 219

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-NLFVSNNLINMYAK 176
            EM   G   D  +  S L  C+   +   G  IH + V+  +E  ++ V  ++++MY+K
Sbjct: 220 KEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSK 279

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVS 235
           +G + +A R+F+ M++R++V+WN +I  Y ++     A   F  M +Q G+QPD++T ++
Sbjct: 280 YGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSIN 339

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L    A L      R++HG+ MRRG F+  +++  A++DMY + G + SA  +F+ +  K
Sbjct: 340 LLPASAILE----GRTIHGYAMRRG-FLPHMVLETALIDMYGECGQLKSAEVIFDRMAEK 394

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +VISWN++I  Y QNG    A+E+FQ + + + + P+  T  SILPAY+   +L +G +I
Sbjct: 395 NVISWNSIIAAYVQNGKNYSALELFQELWDSSLV-PDSTTIASILPAYAESLSLSEGREI 453

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA ++K+    +  +   LV MY  CG ++DA   F  +     V WN+II  + +HG G
Sbjct: 454 HAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFG 513

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             ++  F +M+   V P+  TF SLL ACS SG+V EG  YF  M+ E+GI P ++HYGC
Sbjct: 514 RISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGC 573

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DL GR G+   A  F++ MP  P A IWG+LL A R H ++ +   A++++F+++ +N
Sbjct: 574 MLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDN 633

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YVL+ N+YA  G+WE V+ ++ L   +G+ +T   S++E   K  +F  G+R+H   
Sbjct: 634 TGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVAT 693

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS-------HSERLAIAFGII 648
            KIY E+ ++ ++M     V ++   +  V     E ++ S       HS RLA  FG+I
Sbjct: 694 NKIY-EVLDVVSRM-----VGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLI 747

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+     + +  N R+C  CH + +  S++T REI+V DS  FHHF +G CSCG+YW
Sbjct: 748 STETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 227/435 (52%), Gaps = 6/435 (1%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD+M   D+  WN MI G+   G  +EA+     M   GV  D  T   ++   A 
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             ++  G  IH  ++K G   +++V N+LI++Y K G    A +VF++M ERD+VSWNS+
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y    D  ++   F  M + G +PD  + +S     + +   +  + +H   +R   
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRI 262

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              DV++  +++DMY+K G ++ A  +F G+  +++++WN +I  YA+NG  ++A   FQ
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQ 322

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M E N + P+  T +++LPA     A+ +G  IH   ++      + + T L+DMYG+C
Sbjct: 323 KMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLPHMVLETALIDMYGEC 378

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G++  A  +F ++   + + WN+II+ +  +G+   AL  F+++ D  + PD  T  S+L
Sbjct: 379 GQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASIL 438

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            A + S  +SEG R  H    +     +      +V ++   G L  A     ++ ++ D
Sbjct: 439 PAYAESLSLSEG-REIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK-D 496

Query: 502 ASIWGALLGACRIHG 516
              W +++ A  +HG
Sbjct: 497 VVSWNSIIMAYAVHG 511



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 180/340 (52%), Gaps = 10/340 (2%)

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           +A   +M  AL++FD+M + D   WN +I  +      I A  F++ M  AG++ D  T 
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
             +   VA ++     + +H  +++ G F+ DV + N+++ +Y KLG    A  VFE +P
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLG-FVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP 192

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            +D++SWN++I+GY   G    ++ +F+ M +C    P++ + +S L A SHV + + G 
Sbjct: 193 ERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG-FKPDRFSTMSALGACSHVYSPKMGK 251

Query: 354 KIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           +IH   +++ +   DV V T ++DMY K G +  A  +F  + + + V WN +I C+  +
Sbjct: 252 EIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARN 311

Query: 413 GQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           G+   A   F++M ++ G++PD IT ++LL A +    + EG R  H      G  PH+ 
Sbjct: 312 GRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA----ILEG-RTIHGYAMRRGFLPHMV 366

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
               ++D++G  G L  A      M  +   S W +++ A
Sbjct: 367 LETALIDMYGECGQLKSAEVIFDRMAEKNVIS-WNSIIAA 405


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/666 (38%), Positives = 399/666 (59%), Gaps = 8/666 (1%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G ++H + + +GF +D+ +   L+ MY +    ++A  +FD M  R+  SW A++ GY 
Sbjct: 22  QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYL 81

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q GNA  +L +L EM   GV  +  T ++ L  C     + +G+ IH   VK G E+   
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSV 141

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V N  I+MY+K G +  A +VF++M  R++VSWN++IA +    +   +   F  MQ  G
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINS 284
             PD  T  S       L   R    +H  ++ RG+ +    II +A+VD+YAK G +  
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFE 261

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL-PAY 343
           A  VF+ +  K++ISW+ LI G+AQ G   EA+++F+ + E   ++   G  +SI+   +
Sbjct: 262 AQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRE--SVSNVDGFVLSIMMGVF 319

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + +  + QG ++H  ++K     D+ VA  ++DMY KCG  ++A  LF ++   + V W 
Sbjct: 320 ADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWT 379

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
            +I+ +G HG G+KA++ F +M  +G+  D + +++LL+ACSHSGL+ E Q YF  +   
Sbjct: 380 VMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNN 439

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
             +KP+++HY CMVD+ GRAG L  A N I+NM ++P+  IW  LL ACR+HGN+E+G  
Sbjct: 440 HQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGRE 499

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
             + LF +D++N   YV+MSNIYA  G W+  + VR L + +GLKK  G S +E+N ++ 
Sbjct: 500 VGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIH 559

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
            FY G+ THP  EKI++ L+ +  ++K  +GY     F L DVEE+ KE  L  HSE+LA
Sbjct: 560 FFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLA 619

Query: 643 IAFGIISSPPKSP---IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           I   ++    +     I++FKNLRVCGDCH + K +S+I ++  +VRD+NRFH F+DG+C
Sbjct: 620 IGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLC 679

Query: 700 SCGDYW 705
           SCGDYW
Sbjct: 680 SCGDYW 685



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 217/396 (54%), Gaps = 9/396 (2%)

Query: 25  SGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           SG++P+ +TF   LKAC  L    +G +IH   +K GFEW   V  + + MY + G   +
Sbjct: 99  SGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGM 158

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A ++F+ MP R+  SWNAMI+G+   GN  ++L +   M+ +G   D  T  S L  C  
Sbjct: 159 AEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGA 218

Query: 142 SDNILSGLLIHLYIVKHGLEFNL--FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
              I  G  IH  ++  G   ++   +++ ++++YAK G +  A +VFD++ +++++SW+
Sbjct: 219 LGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWS 278

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I  + Q  + + A   F  ++++    D   L  +  + A L      + +H +I++ 
Sbjct: 279 ALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKV 338

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
              + D+ + N+++DMY K G+   A  +F  + V++V+SW  +ITGY ++GL  +AI +
Sbjct: 339 PSGL-DISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHL 397

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMY 378
           F  M + + I  ++  Y+++L A SH G +R+  +  +R+  N  +  ++    C+VD+ 
Sbjct: 398 FNRM-QLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDIL 456

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           G+ G++ +A +L   +  + +   W  ++S   +HG
Sbjct: 457 GRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHG 492



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 211/417 (50%), Gaps = 10/417 (2%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L  C+++     GL +H   V  G  F+L ++N+LI+MY K   +  A  VFD+M+
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER+VVSW +++  Y Q  +   +      M  +G++P+  T  +       L    N   
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG  ++ G F    ++GNA +DMY+K G I  A  VF  +P ++++SWN +I G+   G
Sbjct: 127 IHGMCVKSG-FEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEG 185

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV--F 369
              +++ +FQ M+   E+ P++ T+ S L A   +GA+R G +IHA +I       +   
Sbjct: 186 NGRKSLVLFQRMQGQGEV-PDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNI 244

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +A+ +VD+Y KCG + +A  +F ++ + + + W+A+I      G   +A++ FRQ+ +  
Sbjct: 245 IASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESV 304

Query: 430 VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
              D      ++   +   LV +G Q + ++++   G+   + +   ++D++ + G    
Sbjct: 305 SNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVAN--SIIDMYLKCGLTEE 362

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR--LFEVDSENVGYYVLMS 543
           A      M VR   S W  ++     HG  E      +R  L  ++ + V Y  L+S
Sbjct: 363 AERLFSEMQVRNVVS-WTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 415/709 (58%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y   G   EA++ +++    S + PD +T   VL A  NL+    G+ +H   LK 
Sbjct: 178 LISGYSSHGYYEEALEIYHELR-NSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKS 236

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G      V   LL MY +F     AR++FD+M VRDS ++N MI GY +     E++ + 
Sbjct: 237 GVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF 296

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E  L+    D +TV S+L  C    ++     I+ Y+++ G      V N LI++YAK 
Sbjct: 297 LE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKC 355

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF+ M  +D VSWNSII+ Y QS D + A   F  M     Q D +T + L 
Sbjct: 356 GDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLI 415

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+  +L D +  + +H   ++ G ++ D+ + NA++DMYAK G +  +  +F  +   D 
Sbjct: 416 SLSTRLADLKFGKGLHSNGIKSGIYI-DLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDT 474

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WNT+I+   + G  +  ++V   M + N++ P+  T++  LP  + + A R G +IH 
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRK-NKVVPDMATFLVTLPMCASLAAKRLGKEIHC 533

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++     ++ +   L++MY KCG ++ +  +F ++ R   V W  +I  +G++G+G+K
Sbjct: 534 CLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEK 593

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M   G+ PD + F++L+ ACSHSGLV +G   F  M+  + I P ++HY C+V
Sbjct: 594 ALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVV 653

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  +  A  FIQ MP+ PDASIW ++L ACR  G+ME     S R+ E++ ++ G
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPG 713

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y +L SN YA + KW+ V  +R   RD+ +KK PG+S IE+  KV +F +G+ + P+ E 
Sbjct: 714 YSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEA 773

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDV-EEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           I+  L  L + M   GY+PD   V Q++ EE+EK  ++  HSERLAIAFG++++ P +P+
Sbjct: 774 IHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPL 833

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           Q+ KNLRVC DCH  TK IS+I  REI+VRD+NRFH FKDGICSC D W
Sbjct: 834 QVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 170/525 (32%), Positives = 281/525 (53%), Gaps = 15/525 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  + + G   +A++ FY     S + PD YTFP V+KAC  L D   G  ++  +L++
Sbjct: 77  IIRAFSKNGWFPKALE-FYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEM 135

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D++V  +L+ MY R GL + AR++FD+MPVRD  SWN++ISGY   G   EAL+I 
Sbjct: 136 GFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E+R   +  D  TV+S+LP  A    +  G  +H + +K G+     V+N L+ MY KF
Sbjct: 196 HELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKF 255

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
                A RVFD+M+ RD V++N++I  Y   E   + +    F   + Q   +PD+LT+ 
Sbjct: 256 SRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKM--FLENLDQ--FKPDILTVT 311

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+      L D   ++ ++ +++R G+ +E   + N ++D+YAK G + +A  VF  +  
Sbjct: 312 SVLCACGHLRDLSLAKYIYNYMLRAGFVLEST-VKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD +SWN++I+GY Q+G   EA+++F+MM    E   +  TY+ ++   + +  L+ G  
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISLSTRLADLKFGKG 429

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H+  IK+ +  D+ V+  L+DMY KCG + D++ +F  +    +V WN +IS     G 
Sbjct: 430 LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGD 489

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
               L    QM    V PD  TF+  L  C+       G+   H     FG +  L+   
Sbjct: 490 FATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGN 548

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            +++++ + G L  +    + M  R D   W  ++ A  ++G  E
Sbjct: 549 ALIEMYSKCGCLESSFRVFERMS-RRDVVTWTGMIYAYGMYGEGE 592



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 243/485 (50%), Gaps = 6/485 (1%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGS 96
           L +  NL + ++IH  V+ LG +   F +  L+  Y  F     +  +F  + P ++   
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYI 73

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN++I  + ++G   +AL+   ++R   VS D  T  S++  CA   +   G L++  I+
Sbjct: 74  WNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQIL 133

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           + G E +L+V N L++MY++ G++  A +VFD+M  RD+VSWNS+I+ Y        A  
Sbjct: 134 EMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            +  ++ + I PD  T+ S+    A L   +  + +HGF ++ G      ++ N ++ MY
Sbjct: 194 IYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSG-VNSVSVVNNGLLAMY 252

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K      A  VF+ + V+D +++NT+I GY +  +  E++++F  +E  ++  P+  T 
Sbjct: 253 LKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF--LENLDQFKPDILTV 310

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S+L A  H+  L     I+  +++     +  V   L+D+Y KCG +  A  +F  +  
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
             +V WN+IIS +   G   +A+  F+ M+    + DHIT++ L++  +    +  G+  
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG- 429

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    + GI   L     ++D++ + G +G +     +M    D   W  ++ AC   G
Sbjct: 430 LHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTL-DTVTWNTVISACVRFG 488

Query: 517 NMELG 521
           +   G
Sbjct: 489 DFATG 493



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 223/418 (53%), Gaps = 10/418 (2%)

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           ++ A I    + S N+     IH  ++  GL+ + F S  LI+ Y+ F     +L VF +
Sbjct: 5   VSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRR 64

Query: 190 MM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +   ++V  WNSII A+ ++     A  F+  ++++ + PD  T  S+    A L D   
Sbjct: 65  VSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
              V+  I+  G F  D+ +GNA+VDMY+++G+++ A  VF+ +PV+D++SWN+LI+GY+
Sbjct: 125 GDLVYKQILEMG-FESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYS 183

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +G   EA+E++  +   + I P+  T  S+LPA++++  ++QG  +H   +K+ +    
Sbjct: 184 SHGYYEEALEIYHELRN-SWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVS 242

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            V   L+ MY K  R  DA  +F ++    SV +N +I  +      ++++  F + LD+
Sbjct: 243 VVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ 302

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             +PD +T  S+L AC H   +S  +  Y +M++  F ++  +K+   ++D++ + G + 
Sbjct: 303 -FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKN--ILIDVYAKCGDMI 359

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNM--ELGAVASDRLFEVDSENVGYYVLMS 543
            A +   +M  + D   W +++      G++   +       + E  ++++ Y +L+S
Sbjct: 360 TARDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS 416


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/729 (37%), Positives = 427/729 (58%), Gaps = 41/729 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F+       +  + +TFP +LKAC   R L+   ++H  + +LG   D F AA+L+  Y 
Sbjct: 39  FFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYG 98

Query: 75  RFGLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRL-------EGV 125
           + G A  A ++FD+MP    D  SW A+IS Y  +G   EA      MR        E  
Sbjct: 99  KCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECC 158

Query: 126 SMDPITVASILPVCA---RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
            +D +++ +++  CA    S+ +  G  +H  +VK+G   +  + N++++MY+    +  
Sbjct: 159 GVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGG 218

Query: 183 ALRVFD--QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG---IQPDLLTLVSLT 237
           A RVF+   + +RDVVSWNS+I+ +  + +   A   F  M   G   ++P+ +T+++L 
Sbjct: 219 AWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFM---EDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
              A+L     S  VH +I  R   +   +DV++  A++DM+A+ G +  A  +F+G+  
Sbjct: 279 KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEG 338

Query: 295 KDVISWNTLITGYAQNGLASEAIEVF-QMMEECN----EINPNQGTYVSILPAYSHVGAL 349
           K+V+ W+ +I GY Q     EA+ +F QM+ E N    E+ PN  T VS++ A S +GA 
Sbjct: 339 KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGAS 398

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIIS 407
           R    IH   +   L  D  +A+ L+DM  KCG I+    +F ++  S+   V W+++I 
Sbjct: 399 RSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIG 458

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
             GIHG+G +AL  F +M   G  P+ IT++S+L+ACSH+GLV +G+  F+ M++++G+ 
Sbjct: 459 AEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMS 518

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P  KHY C+VDL GRAGHL  AHN I NMP++ D ++WG+LL AC +HGN +LG +   +
Sbjct: 519 PTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKK 578

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           +  +DS +VG++VL++N+Y + G+W+ V  +R   R  GL+K PG S IE+ N+V  F  
Sbjct: 579 ILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMA 638

Query: 588 GNRTHPKYEKIYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            +R+HP+ E IY EL  L  ++ K+  YV +    ++D +          HSERLAIAFG
Sbjct: 639 EDRSHPESEMIYKELDGLDERVRKAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFG 698

Query: 647 II----------SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           +I          S    +PI+I KNLRVC DCH +TK +S++ +RE+IVRD++RFHHF+D
Sbjct: 699 LIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRD 758

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 759 GFCSCGDYW 767



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 221/453 (48%), Gaps = 30/453 (6%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           +D+  WN++I+    + N   AL     M+   V  +  T  ++L  CA    +L  L +
Sbjct: 16  KDTFHWNSLIAKN-ATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQS- 208
           H Y+ + GL  + F +  L++ Y K G   +A +VFD+M E   DVVSW ++I+AY  + 
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 209 --NDPITAHGFFTTMQQ------AGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
             ++   A G    M+        G+    L  LVS  ++    N  R   +VHG +++ 
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAI 317
           G F     +GN++V MY+    +  A  VF G+P+  +DV+SWN+LI+G+  NG A  A+
Sbjct: 195 G-FGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERAL 253

Query: 318 EVFQMM--EECNEINPNQGTYVSILPAYSHVGALRQGIKIH----ARVIKNCLCFDVFVA 371
             F+ M  E  + + PN+ T +++L + + +G +     +H    +R     +  DV V 
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-- 429
           T L+DM+ +CG +  A  +F  V   + V W+A+I+ +      ++AL  FRQML EG  
Sbjct: 314 TALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNM 373

Query: 430 ----VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
               V+P+ +T VS++ ACS  G  S      H      G+    +    ++D+  + G 
Sbjct: 374 VGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGD 432

Query: 486 LGMAHNFIQNMPVRPDASI-WGALLGACRIHGN 517
           +         M       + W +++GA  IHG 
Sbjct: 433 IEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/711 (37%), Positives = 404/711 (56%), Gaps = 10/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC--RNLVD-GKKIHCSVLKL 57
           MI  +   G   ++ D   +     GL PD  T   +L  C     VD G  IH   +KL
Sbjct: 218 MICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKL 277

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V V  ++++MY + G  N A+  F     ++  SWN MIS +   G+  EA ++L
Sbjct: 278 GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLL 337

Query: 118 DEMRLEGVSM--DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            EM+++G  M  + +T+ ++LP C     + S   +H Y  +H  + ++ +SN  I  YA
Sbjct: 338 QEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYA 396

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VF  + ++ V SWN++I  + Q+ DP  A      M  +G QPD  T+ S
Sbjct: 397 KCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISS 456

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L    A L   +  + +HG+++R G    D  +G +++  Y   G  +SA  +F+ +  K
Sbjct: 457 LLLACAHLKSLQYGKEIHGYVLRNG-LETDFFVGTSLLSHYIHCGKASSARVLFDRMKDK 515

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIK 354
           +++SWN +I+GY+QNGL  E++ +F+  +  +E I  ++   VS+  A S + ALR G +
Sbjct: 516 NLVSWNAMISGYSQNGLPYESLALFR--KSLSEGIQSHEIAIVSVFGACSQLSALRLGKE 573

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            H  V+K     D FV   ++DMY K G I ++  +F  +   +   WNAII  HGIHG 
Sbjct: 574 AHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGH 633

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A+  + +M   G  PD  T++ +L AC H+GLV EG +YF  MQ    I+P L+HY 
Sbjct: 634 GKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYA 693

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           C++D+  RAG L  A   +  MP   D  IW +LL +CR  G +E+G   + +L E++ +
Sbjct: 694 CLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPD 753

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
               YVL+SN+YA +GKW+GV  VR + ++ GL+K  G S IEV  +V  F  G+   PK
Sbjct: 754 KAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPK 813

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
             +I    R L  ++  +GY P+ S VL +V E+EK  IL  HSE+LAI+FG++ +   +
Sbjct: 814 SAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGT 873

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            ++I+KNLR+C DCHN  K IS+  EREI+VRD+ RFHHF+DG+CSC DYW
Sbjct: 874 TLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 174/525 (33%), Positives = 283/525 (53%), Gaps = 15/525 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y R G   + V  F      +  +PD +TFP V+KAC  ++D   G+ IH  V+K+
Sbjct: 116 LVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKM 175

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +L+ MY + G  + A K+FD MP  +  SWN+MI  + ++G + ++ D+L
Sbjct: 176 GLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLL 235

Query: 118 DEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM   EG+  D +TV +ILPVCA    +  G+ IH   VK GL   + V+N ++ MY+K
Sbjct: 236 MEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSK 295

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLV 234
            G +  A   F +   ++VVSWN++I+A+    D   A      MQ  G  ++ + +T++
Sbjct: 296 CGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTIL 355

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++          R+ + +HG+  R  +  + V + NA +  YAK G +NSA  VF G+  
Sbjct: 356 NVLPACLDKLQLRSLKELHGYSFRHCF--QHVELSNAFILAYAKCGALNSAEKVFHGIGD 413

Query: 295 KDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           K V SWN LI G+AQNG   +A+  +FQM     +  P+  T  S+L A +H+ +L+ G 
Sbjct: 414 KTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQ--PDWFTISSLLLACAHLKSLQYGK 471

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  V++N L  D FV T L+  Y  CG+   A  LF ++   + V WNA+IS +  +G
Sbjct: 472 EIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNG 531

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              ++L  FR+ L EG++   I  VS+  ACS    +  G+     + +   ++      
Sbjct: 532 LPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK--ALQTEDAFV 589

Query: 474 GC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           GC ++D++ ++G +  +      +  +  AS W A++ A  IHG+
Sbjct: 590 GCSIIDMYAKSGCIKESRKVFDGLKDKNVAS-WNAIIVAHGIHGH 633



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 221/417 (52%), Gaps = 9/417 (2%)

Query: 37  VLKACRNLVD---GKKIHCSVL-KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           +L+AC N  D   G+++H  V     +  D  +   L+ MY   G    +R +FD+M  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 93  DSGSWNAMISGYCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           +   WNA++SGY ++G   + + + +D +       D  T  S++  C    ++  G +I
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H  ++K GL  ++FV N L+ MY K G +  A++VFD M E ++VSWNS+I A+ ++   
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 212 ITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
             +      M  + G+ PD++T+V++  + A   +      +HG  ++ G   E+V++ N
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLG-LSEEVMVNN 287

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME-ECNEI 329
           A+V MY+K G +N A   F     K+V+SWNT+I+ ++  G  +EA  + Q M+ +  E+
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEM 347

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
             N+ T +++LPA      LR   ++H    ++C    V ++   +  Y KCG ++ A  
Sbjct: 348 KANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEK 406

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           +F+ +   +   WNA+I  H  +G   KAL+   QM   G +PD  T  SLL AC+H
Sbjct: 407 VFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 205/432 (47%), Gaps = 27/432 (6%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPI----TVASILPVCARSDNILSGLLIHLYIV 156
           I+  C++ N   AL IL +   +  +   +     +  +L  C    +I +G  +H ++ 
Sbjct: 12  IAALCETDNLTTAL-ILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVS 70

Query: 157 KHGLEFNLFVSNN-LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN---DPI 212
                 N +V N  LI MYA  G    +  VFD M  ++++ WN++++ Y ++    D +
Sbjct: 71  DSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVV 130

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
               F   +     QPD  T  S+      + D R    +HG +++ G  + DV +GNA+
Sbjct: 131 KV--FMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVL-DVFVGNAL 187

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V MY K G ++ A  VF+ +P  +++SWN++I  +++NG + ++ ++   M     + P+
Sbjct: 188 VGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPD 247

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T V+ILP  +  G +  G+ IH   +K  L  +V V   +V MY KCG +++A   F 
Sbjct: 248 VVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFV 307

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGLV 450
           +    + V WN +IS   + G  ++A N  ++M  +G  ++ + +T +++L AC     +
Sbjct: 308 KNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQL 367

Query: 451 SE-----GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
                  G  + H  Q       H++     +  + + G L  A      +  +  +S W
Sbjct: 368 RSLKELHGYSFRHCFQ-------HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSS-W 419

Query: 506 GALLGACRIHGN 517
            AL+G    +G+
Sbjct: 420 NALIGGHAQNGD 431



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 14/325 (4%)

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS------RSVHGF 255
           IAA  ++++  TA      +Q        ++L +  +I   L  C N       R +H F
Sbjct: 12  IAALCETDNLTTA---LILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKF 68

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +     +  D ++   ++ MYA  G    +  VF+ +  K++I WN L++GY +NGL  +
Sbjct: 69  VSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGD 128

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
            ++VF  +    +  P+  T+ S++ A   +  +R G  IH  VIK  L  DVFV   LV
Sbjct: 129 VVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALV 188

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVRPDH 434
            MYGKCG +D+AM +F  +P ++ V WN++I     +G    + +   +ML +EG+ PD 
Sbjct: 189 GMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDV 248

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH-NFI 493
           +T V++L  C+  G V  G    H +  + G+   +     MV ++ + G+L  A  +F+
Sbjct: 249 VTVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFV 307

Query: 494 QNMPVRPDASIWGALLGACRIHGNM 518
           +N     +   W  ++ A  + G++
Sbjct: 308 KNN--NKNVVSWNTMISAFSLEGDV 330


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/729 (37%), Positives = 427/729 (58%), Gaps = 41/729 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F+       +  + +TFP +LKAC   R L+   ++H  + +LG   D F AA+L+  Y 
Sbjct: 39  FFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYG 98

Query: 75  RFGLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRL-------EGV 125
           + G A  A ++FD+MP    D  SW A+IS Y  +G   EA      MR        E  
Sbjct: 99  KCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECC 158

Query: 126 SMDPITVASILPVCA---RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
            +D +++ +++  CA    S+ +  G  +H  +VK+G   +  + N++++MY+    +  
Sbjct: 159 GVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGG 218

Query: 183 ALRVFD--QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG---IQPDLLTLVSLT 237
           A RVF+   + +RDVVSWNS+I+ +  + +   A   F  M   G   ++P+ +T+++L 
Sbjct: 219 AWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFM---EDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
              A+L     S  VH +I  R   +   +DV++  A++DM+A+ G +  A  +F+G+  
Sbjct: 279 KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEG 338

Query: 295 KDVISWNTLITGYAQNGLASEAIEVF-QMMEECN----EINPNQGTYVSILPAYSHVGAL 349
           K+V+ W+ +I GY Q     EA+ +F QM+ E N    E+ PN  T VS++ A S +GA 
Sbjct: 339 KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGAS 398

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIIS 407
           R    IH   +   L  D  +A+ L+DM  KCG I+    +F ++  S+   V W+++I 
Sbjct: 399 RSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIG 458

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
             GIHG+G +AL  F +M   G  P+ IT++S+L+ACSH+GLV +G+  F+ M++++G+ 
Sbjct: 459 AEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMS 518

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P  KHY C+VDL GRAGHL  AHN I NMP++ D ++WG+LL AC +HGN +LG +   +
Sbjct: 519 PTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKK 578

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           +  +DS +VG++VL++N+Y + G+W+ V  +R   R  GL+K PG S IE+ N+V  F  
Sbjct: 579 ILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMA 638

Query: 588 GNRTHPKYEKIYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            +R+HP+ E IY EL  L  ++ K+  YV +    ++D +          HSERLAIAFG
Sbjct: 639 EDRSHPESEMIYKELDGLDERVRKAAKYVTETGLNVEDGDIAGLILRCKYHSERLAIAFG 698

Query: 647 II----------SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           +I          S    +PI+I KNLRVC DCH +TK +S++ +RE+IVRD++RFHHF+D
Sbjct: 699 LIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRD 758

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 759 GFCSCGDYW 767



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 221/453 (48%), Gaps = 30/453 (6%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           +D+  WN++I+    + N   AL     M+   V  +  T  ++L  CA    +L  L +
Sbjct: 16  KDTFHWNSLIAKN-ATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQS- 208
           H Y+ + GL  + F +  L++ Y K G   +A +VFD+M E   DVVSW ++I+AY  + 
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 209 --NDPITAHGFFTTMQQ------AGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
             ++   A G    M+        G+    L  LVS  ++    N  R   +VHG +++ 
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAI 317
           G F     +GN++V MY+    +  A  VF G+P+  +DV+SWN+LI+G+  NG A  A+
Sbjct: 195 G-FGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERAL 253

Query: 318 EVFQMM--EECNEINPNQGTYVSILPAYSHVGALRQGIKIH----ARVIKNCLCFDVFVA 371
             F+ M  E  + + PN+ T +++L + + +G +     +H    +R     +  DV V 
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-- 429
           T L+DM+ +CG +  A  +F  V   + V W+A+I+ +      ++AL  FRQML EG  
Sbjct: 314 TALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNM 373

Query: 430 ----VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
               V+P+ +T VS++ ACS  G  S      H      G+    +    ++D+  + G 
Sbjct: 374 VGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGD 432

Query: 486 LGMAHNFIQNMPVRPDASI-WGALLGACRIHGN 517
           +         M       + W +++GA  IHG 
Sbjct: 433 IEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/748 (37%), Positives = 414/748 (55%), Gaps = 45/748 (6%)

Query: 1   MISVYVRCGRLSE-------AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCS 53
           ++ V V+C  LS        A++C        G   +       +  C N +  K+IH  
Sbjct: 35  LLRVSVKCSALSTPLSLGQIAMNCTEAVKGEKGNEVESTNILEFIDQCTNTMQLKQIHAH 94

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
           +L+     D + A+ LL  Y     + +  A+ +F+ +P  +   WN +I GY  S +  
Sbjct: 95  MLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPT 154

Query: 112 EALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
           ++  I   M L   S  P   T   +    +R   +  G ++H  ++K  L  +LF+ N+
Sbjct: 155 QSFLIFLHM-LHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNS 213

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           LIN Y   G    A RVF  M  +DVVSWN++I A+     P  A   F  M+   ++P+
Sbjct: 214 LINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPN 273

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
           ++T+VS+ S  A+  D    R +  +I   G F E +I+ NA++DMY K G IN A  +F
Sbjct: 274 VITMVSVLSACAKKIDLEFGRWICSYIENNG-FTEHLILNNAMLDMYVKCGCINDAKDLF 332

Query: 290 EGLPVKDVISW-------------------------------NTLITGYAQNGLASEAIE 318
             +  KD++SW                               N LI+ Y QNG    A+ 
Sbjct: 333 NKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALS 392

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F  M+   +  P++ T +  L A + +GA+  G  IH  + K+ +  +  +AT L+DMY
Sbjct: 393 LFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMY 452

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG ++ AM +F+ V R     W+A+I    ++GQG  AL+ F  ML+  ++P+ +TF 
Sbjct: 453 AKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFT 512

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           ++L AC+H+GLV+EG++ F  M+  +GI P ++HY C+VD+FGRAG L  A +FI+ MP+
Sbjct: 513 NILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPI 572

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P A++WGALLGAC  HGN+EL  +A   L E++  N G +VL+SNIYA  G WE V  +
Sbjct: 573 PPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNL 632

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L RD  +KK P  SSI+VN  V  F  G+ +HP  +KIY +L  ++ K K +GY PD 
Sbjct: 633 RKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDM 692

Query: 619 SFVLQDVEEDE-KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
           S +LQ  EED   E  L  HSE+LAIAFG+IS+    PI+I KN+R+CGDCH + K +SQ
Sbjct: 693 SNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQ 752

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + +R+I++RD  RFHHF+ G CSC DYW
Sbjct: 753 LYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/662 (39%), Positives = 398/662 (60%), Gaps = 10/662 (1%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRDSGSWNAMISGY 104
           K+IH  +L+ G  +D F A+ ++  +C     G    AR +F  +P   S + N++I G 
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIV-AFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGC 63

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
                  EAL    EM ++G+  D  T  S+   C  S     G  IH +  K G   + 
Sbjct: 64  TDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDT 120

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           +  N L+NMY+  G +  A +VFD+M ++ VVSW ++I  + Q + P  A   F  M ++
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 225 -GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             ++P+ +TLV++ +  A+  D    + +H +I   G F   V++   ++D+Y K G + 
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG-FGRHVVLNTVLMDVYCKCGCVQ 239

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  +F+    K++ SWN +I G+ ++    EA+ +F+ M+    I  ++ T  S+L A 
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQ-TKGIKGDKVTMASLLLAC 298

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           +H+GAL  G  +HA + K  +  DV + T LVDMY KCG I+ A+ +F+++P    + W 
Sbjct: 299 THLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           A+I    + GQ + AL +F +M  +GV+PD ITFV +L ACSH+G V EG  +F+ M + 
Sbjct: 359 ALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDT 418

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +GI+P ++HYG +VD+ GRAG +  A   I++MP+ PD  + G LLGACRIHGN+E    
Sbjct: 419 YGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAER 478

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
           A+ +L E+D  + G YVL+SNIY +  KWE     R L  +RG++K PG S IEV+  V 
Sbjct: 479 AAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVH 538

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
            F  G+ +H +  +I + L ++ +K+K+ GYVPDKS VL D+ E+EKE  L+ HSE+LAI
Sbjct: 539 EFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAI 598

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG++S+   +PI++ KNLR+C DCH+ TK IS++  REIIVRD NRFHHFKDG CSC  
Sbjct: 599 AFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRG 658

Query: 704 YW 705
           +W
Sbjct: 659 FW 660



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 234/456 (51%), Gaps = 10/456 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           FYQ  +  GL PD YTFP + K+CRN  +GK+IHC   KLGF  D +   +L++MY   G
Sbjct: 75  FYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCG 134

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE-MRLEGVSMDPITVASIL 136
               ARK+FD M  +   SW  MI  + Q     EA+ + D  M+ E V  + +T+ ++L
Sbjct: 135 CLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVL 194

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             CAR+ ++     IH YI +HG   ++ ++  L+++Y K G ++ A  +FD+  E+++ 
Sbjct: 195 TACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLF 254

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWN +I  + + ++   A   F  MQ  GI+ D +T+ SL      L      + +H +I
Sbjct: 255 SWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYI 314

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
            ++   + DV +G A+VDMYAK G I +A  VF  +P KDV++W  LI G A  G A  A
Sbjct: 315 KKQRIDV-DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENA 373

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCL 374
           ++ F  M     + P+  T+V +L A SH G + +GI  H   + +       +     L
Sbjct: 374 LQYFDEM-HIKGVKPDAITFVGVLAACSHAGFVDEGIS-HFNSMSDTYGIQPTIEHYGGL 431

Query: 375 VDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           VD+ G+ GRI +A  L   +P +        ++    IHG  + A    +Q+L+  + P 
Sbjct: 432 VDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLE--IDPY 489

Query: 434 HI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           H  T+V L      S    E +R   +M E    KP
Sbjct: 490 HSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKP 525



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 174/358 (48%), Gaps = 28/358 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI V+ +  + +EAV  F +   +  ++P+  T   VL AC   R+L   K+IH  + + 
Sbjct: 157 MIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEH 216

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   V +   L+ +YC+ G   +AR LFD    ++  SWN MI+G+ +  N  EAL + 
Sbjct: 217 GFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLF 276

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+ +G+  D +T+AS+L  C     +  G  +H YI K  ++ ++ +   L++MYAK 
Sbjct: 277 REMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKC 336

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A++VF +M E+DV++W ++I           A  +F  M   G++PD +T V + 
Sbjct: 337 GSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVL 396

Query: 238 SI----------VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           +           ++  N   ++  +   I   G           +VD+  + G I  A  
Sbjct: 397 AACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG----------GLVDILGRAGRIAEAEE 446

Query: 288 VFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAY 343
           + + +P+  D      L+     +G   EA E  +  ++  EI+P + GTYV +   Y
Sbjct: 447 LIKSMPMAPDQFVLGGLLGACRIHG-NLEAAE--RAAKQLLEIDPYHSGTYVLLSNIY 501


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/774 (35%), Positives = 414/774 (53%), Gaps = 106/774 (13%)

Query: 34  FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           F  +L+    + D   G+ +HC ++K G    V++  +L+  Y + G    A  +FD+MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMR----------------------------- 121
           ++ + SWN +ISGY + GN   +  +L EM                              
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 122 --LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK--- 176
              E V     TV+++L  CA +  +  G  IH ++VK GL   + V+ +L+NMYAK   
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 177 ----------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
                                        G    A   F++M +RD+VSWNS+I+ Y Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 209 NDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
              + A   F+ M  +  ++PD  TL S+ S  A L      + +H +I+R        +
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 268 IGNAVVDMYAK---------------------------------LGIINSACAVFEGLPV 294
            GNA++ MYAK                                 LG +  A  +F  L  
Sbjct: 313 -GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGI 353
           +DV++W  +I GY QNGL ++A+E+F++M   NE   PN  T  ++L   S +  L  G 
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLM--VNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGI 411
           +IHA  IK        V   L+ MY K G I+ A  +F  +P  +   V W ++I     
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQ 488

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG G +A+N F +ML  G++PDHIT+V +L+AC+H GLV +G++Y++MM E   I+P L 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CM+DL+GRAG L  A+ FI++MP+ PD   WG+LL +C+IH N +L  VA++RL  +
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLI 608

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           D  N G Y+ ++N+Y+  GKWE   + R L +DRG++K  G S I + N+V  F   +  
Sbjct: 609 DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVI 668

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ ++IY  +  +  ++K +G++PD   VL D+EE+ KE IL  HSE+LAIAFG++++P
Sbjct: 669 HPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTP 728

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             + ++I KNLRVC DCH+  KFIS++  REIIVRD+ RFHHFKDG CSC DYW
Sbjct: 729 ENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 172/389 (44%), Gaps = 48/389 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G   EA+  F +      L+PD +T   +L AC NL     GK+IH  +L+ 
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 58  GFEWDVFVAASLLHMYCRFG-------------------------------LANV--ARK 84
             E    V  +L+ MY + G                               L NV  AR+
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +F+ +  RD  +W AMI GY Q+G   +AL++   M  EG   +  T+A++L V +    
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIA 203
           +  G  IH   +K G      V+N LI MYAK G +  A RVFD    ++++VSW S+I 
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   F  M   G++PD +T V + S    +      R  +  +       
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIE 544

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
             +     ++D+Y + G++  A    E +P++ D I+W +L+     +    LA  A E 
Sbjct: 545 PTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAER 604

Query: 320 FQMMEECNEINP-NQGTYVSILPAYSHVG 347
             +      I+P N G Y+++   YS  G
Sbjct: 605 LLL------IDPGNSGAYLALANVYSACG 627


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/708 (38%), Positives = 403/708 (56%), Gaps = 6/708 (0%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            +IS  V+ G    A++ F +      L+PD  T   +L AC +   L  G ++H   +K 
Sbjct: 333  LISGLVQQGFSDRALELFTKMQ-RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA 391

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G   D+ +  SLL +Y +      A K F      +   WN M+  Y Q  N  ++ +I 
Sbjct: 392  GMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +M++EG+  +  T  SIL  C     +  G  IH +++K G + N++V + LI+MYAK+
Sbjct: 452  RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +  ALR+  ++ E DVVSW ++IA Y Q +    A   F  M+  GIQ D +   S  
Sbjct: 512  GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            S  A +   R  + +H      G F  D+ I NA++ +YA+ G I  A   FE +  K+ 
Sbjct: 572  SACAGIRALRQGQQIHAQSYAAG-FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630

Query: 298  ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            ISWN+L++G AQ+G   EA++VF  M    E   N  TY S + A + +  ++QG +IH+
Sbjct: 631  ISWNSLVSGLAQSGYFEEALQVFVRMLR-TEAEVNMFTYGSAISAAASLANIKQGQQIHS 689

Query: 358  RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             V+K     +  V+  L+ +Y K G I DA   F  +   + + WNA+I+ +  HG G +
Sbjct: 690  MVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGME 749

Query: 418  ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            AL  F +M   G+ P+H+TFV +L+ACSH GLV EG  YF  M +   + P  +HY C+V
Sbjct: 750  ALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVV 809

Query: 478  DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            DL GRAG L  A  +I+ MP+  DA IW  LL AC IH N+E+G  A+  L E++ E+  
Sbjct: 810  DLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA 869

Query: 538  YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
             YVL+SNIYA   +W   D  R L +D G+KK PG S IEV N V  FY G++ HP   +
Sbjct: 870  TYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQ 929

Query: 598  IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
            IY+ + +L  +   +GYV D   +L + E+ +K+ I   HSE+LAIAFG++S     PI+
Sbjct: 930  IYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIR 989

Query: 658  IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLRVC DCHNW K++S+I+ R IIVRD++RFHHF  G+CSC D+W
Sbjct: 990  VMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 155/541 (28%), Positives = 267/541 (49%), Gaps = 15/541 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-------KKIHCS 53
           MI V+V   + +  V C ++  L  G+ P+ YTF  VLKAC   V G       K++H  
Sbjct: 130 MIHVFV-AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC---VGGDIAFNYVKQVHSR 185

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
               GF+    VA  L+ +Y + G    A+K+F+ + ++D  +W AMISG  Q+G   EA
Sbjct: 186 TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           + +  +M    +   P  ++S+L    +      G  +H  ++K G     +V N L+ +
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y++   +  A R+F  M  RD VS+NS+I+   Q      A   FT MQ+  ++PD +T+
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL S  A +        +H   ++ G    D+I+  +++D+Y+K   + +A   F    
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            ++++ WN ++  Y Q    S++ E+F+ M+    I PNQ TY SIL   + +GAL  G 
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGE 483

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  VIK     +V+V + L+DMY K G++  A+ +  ++P    V W A+I+ +  H 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F +M   G++ D+I F S ++AC+    + +GQ+  H      G    L   
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAAGFGADLSIN 602

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             ++ L+ R G +  A+   + +  + + S W +L+      G  E       R+   ++
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEA 661

Query: 534 E 534
           E
Sbjct: 662 E 662



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 150/533 (28%), Positives = 264/533 (49%), Gaps = 12/533 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS   + G   EA+  F      S + P  Y    VL A   +     G+++HC V+K 
Sbjct: 232 MISGLSQNGLEEEAILLFCDMH-ASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKW 290

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  + +V   L+ +Y R      A ++F  M  RD  S+N++ISG  Q G +  AL++ 
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELF 350

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ + +  D ITVAS+L  CA    +  G+ +H + +K G+  ++ +  +L+++Y+K 
Sbjct: 351 TKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC 410

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A + F      ++V WN ++ AY Q ++   +   F  MQ  G+ P+  T  S+ 
Sbjct: 411 ADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL 470

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L        +H  +++ G F  +V + + ++DMYAK G +  A  +   LP  DV
Sbjct: 471 RTCTSLGALYLGEQIHTHVIKTG-FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I GY Q+ + SEA+++F+ ME       N G + S + A + + ALRQG +IHA
Sbjct: 530 VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG-FASAISACAGIRALRQGQQIHA 588

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +        D+ +   L+ +Y +CGRI +A   F ++   +++ WN+++S     G  ++
Sbjct: 589 QSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE 648

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +ML      +  T+ S ++A +    + +GQ+  H M  + G     +    ++
Sbjct: 649 ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLI 707

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            L+ ++G +  A     +M  R   S W A++     HG      + + RLFE
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVIS-WNAMITGYSQHG----CGMEALRLFE 755



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 250/499 (50%), Gaps = 16/499 (3%)

Query: 21  FTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           F    G+R ++  +  +L+ C    +L +  ++HC + K GF+ +  +  SL+  Y R G
Sbjct: 48  FMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG 107

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
             + A K+FD+   R   SWN MI  +    +  +   +   M  EG++ +  T A +L 
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 138 VCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
            C   D   + +  +H     +G + +  V+N LI++Y+K G +  A +VF+ +  +D+V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +W ++I+   Q+     A   F  M  + I P    L S+ S   ++        +H  +
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++ G F  +  + N +V +Y++   + SA  +F  +  +D +S+N+LI+G  Q G +  A
Sbjct: 288 IKWG-FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 317 IEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           +E+F +M  +C  + P+  T  S+L A + VGAL +G+++H+  IK  +  D+ +   L+
Sbjct: 347 LELFTKMQRDC--LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL 404

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           D+Y KC  ++ A   F      + V WN ++  +G       +   FRQM  EG+ P+  
Sbjct: 405 DLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQF 464

Query: 436 TFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNF 492
           T+ S+L  C+  G +  G++ + H+++  F     L  Y C  ++D++ + G L +A   
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGF----QLNVYVCSVLIDMYAKYGQLALALRI 520

Query: 493 IQNMPVRPDASIWGALLGA 511
           ++ +P   D   W A++  
Sbjct: 521 LRRLP-EDDVVSWTAMIAG 538



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 186/399 (46%), Gaps = 5/399 (1%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           + +++ M   GV  +      +L  C  S ++   + +H  I K G +    + ++L++ 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y + G    A++VFD+   R V SWN +I  +            F  M   GI P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 234 VSLTSIVAQLNDCRNS-RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             +       +   N  + VH      G F    ++ N ++D+Y+K G I SA  VF  +
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYG-FDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            +KD+++W  +I+G +QNGL  EAI +F  M   +EI P      S+L A + +     G
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELG 280

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            ++H  VIK     + +V   LV +Y +  ++  A  +F  +     V +N++IS     
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G  D+AL  F +M  + ++PD IT  SLL+AC+  G + +G +  H    + G+   +  
Sbjct: 341 GFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIIL 399

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G ++DL+ +   +  AH F        +  +W  +L A
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVA 437


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/644 (41%), Positives = 378/644 (58%), Gaps = 39/644 (6%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN M+ GY  S + V AL +   M   G+  +  T   +L  CA+S     G  IH +++
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS------------------- 197
           K G E +L+V  +LI+MYA+ G +  A +VFD+   RDVVS                   
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 198 ------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                       WN++I+ Y ++     A   F  M +  ++PD  T+V++ S  AQ   
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R VH +I   G F  ++ I NA++D+Y+K G + +AC +FEGL  KDV+SWNTLI 
Sbjct: 214 VELGRQVHSWIDDHG-FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIG 272

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GY    L  EA+ +FQ M    E +PN  T VSILPA +H+GA+  G  IH  + K    
Sbjct: 273 GYTHMNLYKEALLLFQEMLRSGE-SPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLK- 330

Query: 366 FDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
            DV  A    T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ +   + 
Sbjct: 331 -DVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F +M   G+ PD ITFV LL+ACSHSG +  G+  F  M +++ I P L+HYGCM+DL G
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
            +G    A   I+ MP+ PD  IW +LL ACR HGN+EL    +  L +V+ EN G YVL
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA  G+W+ V +VR+L   +G+KK PG SSIE++++V  F  G++ HP+  +IY  
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGM 569

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  + A ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I KN
Sbjct: 570 LEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKN 629

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVC +CH  TK +S+I +REII RD  RFHHF+DG+CSC D+W
Sbjct: 630 LRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 242/468 (51%), Gaps = 52/468 (11%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP +LK+C   +   +G++IH  VLKLG+E D++V  SL+ MY 
Sbjct: 53  LYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYA 112

Query: 75  RFGL-----------------------------ANV--ARKLFDDMPVRDSGSWNAMISG 103
           + G                               N+  A+++FD++PV+D  SWNAMISG
Sbjct: 113 QNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISG 172

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++G+  EAL++  EM    V  D  T+ ++L  CA+S ++  G  +H +I  HG   N
Sbjct: 173 YAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSN 232

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  +F+ +  +DVVSWN++I  Y   N    A   F  M +
Sbjct: 233 LKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 292

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI----IGNAVVDMYAKL 279
           +G  P+ +T+VS+    A L      R +H +I ++   ++DV     +  +++DMYAK 
Sbjct: 293 SGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKK---LKDVTNAPSLRTSLIDMYAKC 349

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I +A  VF  +  K + SWN +I G+A +G A+   ++F  M + N I P+  T+V +
Sbjct: 350 GDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRK-NGIEPDDITFVGL 408

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP 395
           L A SH G L  G  I   + ++   +D+        C++D+ G  G   +A  +   +P
Sbjct: 409 LSACSHSGKLDLGRHIFKSMTQD---YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMP 465

Query: 396 -RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
                V W +++     HG  + A +F R ++   V P++     LL+
Sbjct: 466 MEPDGVIWCSLLKACRRHGNLELAESFARNLMK--VEPENPGSYVLLS 511



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 186/379 (49%), Gaps = 39/379 (10%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F    +A+ VF  + E + + WN+++  Y  S+DP++A   +  M   G+ P+  T   L
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFL 72

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFME------------------------------DV 266
               A+       + +HG +++ G+  +                              DV
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A++  YA  G I SA  +F+ +PVKDV+SWN +I+GYA+ G   EA+E+F+ M + 
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N + P++GT V++L A +   ++  G ++H+ +  +    ++ +   L+D+Y KCG+++ 
Sbjct: 193 N-VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  +     V WN +I  +       +AL  F++ML  G  P+ +T VS+L AC+H
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311

Query: 447 SGLVSEGQRYFHM----MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            G +  G R+ H+      ++    P L+    ++D++ + G +  AH    +M +    
Sbjct: 312 LGAIDIG-RWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSM-LHKSL 367

Query: 503 SIWGALLGACRIHGNMELG 521
           S W A++    +HG    G
Sbjct: 368 SSWNAMIFGFAMHGRANAG 386


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/640 (39%), Positives = 383/640 (59%), Gaps = 6/640 (0%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDS--GSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           SL   Y R G  + A       P   S   +WNA+++   ++G+   AL +   +     
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALP-SSA 107

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D  T    L  CAR  ++ +   + +     G   ++FV + L+++Y++ G M  A+R
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIR 167

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VFD M  +D V+W++++A +  +  P+ A G ++ M++ G+  D + +V +        +
Sbjct: 168 VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGN 227

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            R   SVHG  +R G  M DV+I  ++VDMYAK G  + A  VF  +P ++ +SWN LI+
Sbjct: 228 TRMGASVHGRFLRHGMRM-DVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALIS 286

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           G+AQNG A EA+++F+ M     + P+ G  VS L A + VG L+ G  IH  +++  L 
Sbjct: 287 GFAQNGHADEALDLFREMSTSG-LQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LE 344

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           F   + T ++DMY KCG ++ A  LF ++     V WNA+I+C G HG G  AL  F+++
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL 404

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            + G++PDH TF SLL+A SHSGLV EG+ +F  M  EFGI+P  KH  C+VDL  R+G 
Sbjct: 405 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGL 464

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           +  A+  + +M   P   IW ALL  C  +  +ELG   + ++ E   E++G   L+SN+
Sbjct: 465 VEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNL 524

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           YA   KW+ V E+R L +D G KK PG+S IEV+     F   +++HP++++I   +  L
Sbjct: 525 YAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKL 584

Query: 606 TAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVC 665
           + +M+ +GYVP   FV  D++ED KE +L+ HSERLAIAFG++++ P + + I KNLRVC
Sbjct: 585 SFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVC 644

Query: 666 GDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           GDCH+  K+IS+I +REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 645 GDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 218/420 (51%), Gaps = 26/420 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++   R G    A+  F    L S  RPD  TF   L AC  L D    + +       
Sbjct: 83  LLAARSRAGSPGAALRVFR--ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAA 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  DVFV ++LLH+Y R G    A ++FD MP +D  +W+ M++G+  +G  VEAL + 
Sbjct: 141 GYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMY 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR  GV+ D + +  ++  C  + N   G  +H   ++HG+  ++ ++ +L++MYAK 
Sbjct: 201 SRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKN 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A +VF  M  R+ VSWN++I+ + Q+     A   F  M  +G+QPD   LVS  
Sbjct: 261 GHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSAL 320

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +   +  +S+HGFI+RR  F    I+G AV+DMY+K G + SA  +F  L  +D+
Sbjct: 321 LACADVGFLKLGKSIHGFILRRLEF--QCILGTAVLDMYSKCGSLESARKLFNKLSSRDL 378

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN +I     +G   +A+ +FQ + E   I P+  T+ S+L A SH G + +G     
Sbjct: 379 VLWNAMIACCGTHGCGHDALALFQELNETG-IKPDHATFASLLSALSHSGLVEEGKFWFD 437

Query: 358 RVI---------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS 407
           R+I         K+C+        C+VD+  + G +++A  +   +    ++P W A++S
Sbjct: 438 RMITEFGIEPTEKHCV--------CVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLS 489


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/686 (39%), Positives = 410/686 (59%), Gaps = 11/686 (1%)

Query: 29  PDFYT---FPPVLKACR---NLVDGKKIHCS-VLKLGFEWDVFVAASLLHMYCRFGLANV 81
           PD  T      +L++C    +L  G+ +H   VL        F+A  L+ MY        
Sbjct: 15  PDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLAS 74

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LF  MP R++ SW  ++SG  Q+    +AL     MR  GV+     ++S     A 
Sbjct: 75  ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAA 134

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
               L G  +H   V+ G +  LFV++NL +MY+K G++  A RVFDQM ++D V+W ++
Sbjct: 135 LGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 194

Query: 202 IAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           I  Y ++     A   F  M++ G +  D     S+ S    L D   S+S+H  + + G
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 254

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEV 319
           + +E V + NA++DMYAK   + SA  V +  P   +V+S  ++I GY +     EA+ +
Sbjct: 255 FELE-VAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVI 313

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           +  +     + PN+ T+ S++   +    L QG ++HA+VIK  L  D FV + LVDMYG
Sbjct: 314 YVELRR-QGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYG 372

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCG I  +M LF ++   + + WNA+I+    HG G +A+  F +M+  G+RP+HI FVS
Sbjct: 373 KCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVS 432

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           LLTACSH+GLV EG +YF+ M+E  GI+P  +HY C++D +GRAG L  A+ FI  MP++
Sbjct: 433 LLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIK 492

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P+A  W +LLGACR+ G+ ELG VA+  L +++  N G +V +S IYA++G+WE V  VR
Sbjct: 493 PNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVR 552

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
            L RD  +KK PG+S ++ N K  +F + + +HP+ + IY++L  LT ++K  GY+PD S
Sbjct: 553 KLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTS 612

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
           F+  ++E+  KE IL  HSER+A+AF +IS P   PI + KNLR+C DCH   KFI ++ 
Sbjct: 613 FLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVE 672

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            R+IIVRD++RFHHF +G CSCGDYW
Sbjct: 673 RRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y+    + EA+  + +     G+ P+ +TF  ++K C     L  G ++H  V+K 
Sbjct: 297 MIDGYIETDCVEEALVIYVELR-RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT 355

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D FV ++L+ MY + GL +++ +LF+++  R   +WNA+I+ + Q G+  EA+   
Sbjct: 356 DLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAF 415

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
           D M   G+  + I   S+L  C+ +  +  GL  + Y +K  HG+E      + +I+ Y 
Sbjct: 416 DRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLK-YFYSMKEAHGIEPKEEHYSCIIDTYG 474

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A +   +M ++ +   W S++ A
Sbjct: 475 RAGRLDEAYKFISEMPIKPNAYGWCSLLGA 504


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/719 (38%), Positives = 407/719 (56%), Gaps = 19/719 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +++ +   G+  E +    +     G+RPD  TF   L +C    +L DG +IH  V+  
Sbjct: 116 LVAAFAISGQSKETLRALERMR-QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDS 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDI 116
             E D  V+ +LL+MY + G  + A+++F  M   R+  SW+ M   +   GN  EAL  
Sbjct: 175 RLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRH 234

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M L G+      + +IL  C+    +  G LIH  I   G E  L V+N ++ MY +
Sbjct: 235 FRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGR 294

Query: 177 FGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            G +  A +VFD M E  RDVVSWN +++AY  ++    A   +  MQ   ++ D +T V
Sbjct: 295 CGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYV 351

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           SL S  +   D    R +H  I+      ++VI+GNA+V MYAK G    A AVF+ +  
Sbjct: 352 SLLSACSSAEDVGLGRVLHKQIVN-DELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQ 410

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNE------INPNQGTYVSILPAYSHVGA 348
           + +ISW T+I+ Y +  L +EA  +FQ M E  +      + P+   +V+IL A + V A
Sbjct: 411 RSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSA 470

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV-PRSSSVPWNAIIS 407
           L QG  +  +     L  D  V T +V++YGKCG I++   +F  V  R     WNA+I+
Sbjct: 471 LEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GI 466
            +   GQ  +AL  F +M  EGVRPD  +FVS+L ACSH+GL  +G+ YF  M  E+  +
Sbjct: 531 VYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNV 590

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
              ++H+GC+ DL GR G L  A  F++ +PV+PDA  W +LL ACR H +++     ++
Sbjct: 591 TRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVAN 650

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           +L  ++      YV +SNIYA + KW  V +VR    ++G+KK  G S+IE+   +  F 
Sbjct: 651 KLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFA 710

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
           TG+  HP+  +I +EL  L ++MK  GYVPD   VL  V+E EKE +L SHSERLAIA G
Sbjct: 711 TGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALG 770

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS+P  +P+++ KNLRVC DCH  TK IS+I  R+I+VRD  RFH FKDG CSC DYW
Sbjct: 771 LISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 273/564 (48%), Gaps = 47/564 (8%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANV 81
            +R +  T+  +L+ C   + L +G+KIH   +K      ++ +   ++ MY        
Sbjct: 38  AVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGD 97

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A+  FD +  R+  SW  +++ +  SG + E L  L+ MR +GV  D +T  + L  C  
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNS 200
            +++  G+ IH  +V   LE +  VSN L+NMY K G + HA RVF +M   R+V+SW+ 
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +  A+    +   A   F  M   GI+     +V++ S  +     ++ R +H  I   G
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSG 277

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIE 318
            F  ++++ NAV+ MY + G +  A  VF+ +   ++DV+SWN +++ Y  N    +AI+
Sbjct: 278 -FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           ++Q M    ++  ++ TYVS+L A S    +  G  +H +++ + L  +V V   LV MY
Sbjct: 337 LYQRM----QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 392

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-------EGVR 431
            KCG   +A ++F ++ + S + W  IIS +       +A + F+QML+       + V+
Sbjct: 393 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 452

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVDLFGRAGHLGM 488
           PD + FV++L AC+    + +G+    M+ E+    G+         +V+L+G+ G +  
Sbjct: 453 PDALAFVTILNACADVSALEQGK----MVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 508

Query: 489 AHNFIQNMPVRPDASIWGALLG----------ACRIHGNMELGAVASDRLFEV------- 531
                  +  RPD  +W A++           A ++   ME+  V  D    V       
Sbjct: 509 GRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACS 568

Query: 532 ----DSENVGYYVLMSNIYANVGK 551
               + +   Y+  M+  Y NV +
Sbjct: 569 HTGLEDQGKSYFTSMTTEYRNVTR 592



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 191/397 (48%), Gaps = 11/397 (2%)

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKF 177
           ++  + V  +  T A +L  CAR+  +  G  IH   VKH  L  NL + N++++MYA  
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                A   FD + +R++ SW  ++AA+  S            M+Q G++PD +T ++  
Sbjct: 93  DSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 152

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKD 296
                    R+   +H  ++     + D  + NA+++MY K G ++ A  VF  +   ++
Sbjct: 153 GSCGDPESLRDGIRIHQMVVDSRLEI-DPKVSNALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISW+ +   +A +G   EA+  F+ M     I   +   V+IL A S    ++ G  IH
Sbjct: 212 VISWSIMAGAHALHGNVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRLIH 270

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCHGIHGQ 414
           + +  +    ++ VA  ++ MYG+CG +++A  +F  +  +    V WN ++S +  + +
Sbjct: 271 SCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDR 330

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G  A+  +++M    +R D +T+VSLL+ACS +  V  G R  H       ++ ++    
Sbjct: 331 GKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLG-RVLHKQIVNDELEKNVIVGN 386

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            +V ++ + G    A      M  R   S W  ++ A
Sbjct: 387 ALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA 422



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           +++  ++ +  T   L    A+       R +H   ++      ++I+GN +V MYA   
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
               A A F+ L  +++ SW  L+  +A +G + E +   + M + + + P+  T+++ L
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQ-DGVRPDAVTFITAL 152

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            +     +LR GI+IH  V+ + L  D  V+  L++MY KCG +  A  +F ++ R+ +V
Sbjct: 153 GSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNV 212

Query: 401 -PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
             W+ +   H +HG   +AL  FR ML  G++      V++L+ACS   LV +G R  H 
Sbjct: 213 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RLIHS 271

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNM 518
                G +  L     ++ ++GR G +  A      M     D   W  +L A  +H + 
Sbjct: 272 CIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA-YVHNDR 330

Query: 519 ELGAVASDRLFEVDSENVGYYVLMS 543
              A+   +  ++ ++ V Y  L+S
Sbjct: 331 GKDAIQLYQRMQLRADKVTYVSLLS 355


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/677 (37%), Positives = 390/677 (57%), Gaps = 38/677 (5%)

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           +A   + +Y   G    AR LFD +P  D  +W  +IS   + G ++EA+   ++ R + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 125 -VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  D + + S+   CA   ++++   +H   ++ G   ++ + N LI+MY K      A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             VF+ M  RDV+SW S+ + Y        A G F  M   G +P+ +T+ S+      L
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D ++ R VHGF++R G    +V + +A+V+MYA    I  A  VF+ +  +D +SWN L
Sbjct: 193 KDLKSGREVHGFVVRNG-MGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVL 251

Query: 304 ITGY-----------------------------------AQNGLASEAIEVFQMMEECNE 328
           IT Y                                    QNG   +A+EV   M+    
Sbjct: 252 ITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG- 310

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
             PNQ T  S+LPA +++ +LR G +IH  + ++    D+   T LV MY KCG ++ + 
Sbjct: 311 FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSR 370

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  + +  +V WN +I    +HG G++AL  FR+M+D GVRP+ +TF  +L+ CSHS 
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSR 430

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG   F  M  +  ++P   H+ CMVD+  RAG L  A+ FI+ MP+ P A  WGAL
Sbjct: 431 LVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGAL 490

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LG CR++ N+ELG +A++RLFE++S+N G YVL+SNI  +   W    E R L RDRG+ 
Sbjct: 491 LGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVT 550

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG S I+V N+V  F  G++++ + ++IY  L  +  KM+  GY+P+  FVLQDV+++
Sbjct: 551 KNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQE 610

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE +L +HSE+LA+AFG+++   +S I++FKNLR+CGDCHN  KF+++I   +IIVRDS
Sbjct: 611 EKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDS 670

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHF+DG+CSC D+W
Sbjct: 671 LRFHHFRDGLCSCQDFW 687



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 221/446 (49%), Gaps = 42/446 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS   + GR  EA+  +  F   + + PD      V KAC   R++++ K++H   ++ 
Sbjct: 48  LISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRF 107

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DV +  +L+ MY +   +  AR +F+ MP RD  SW +M S Y   G   EAL   
Sbjct: 108 GFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAF 167

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M L G   + +TV+SILP C    ++ SG  +H ++V++G+  N+FVS+ L+NMYA  
Sbjct: 168 RKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASC 227

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY-------------------------------- 205
             +R A  VFD M  RD VSWN +I AY                                
Sbjct: 228 LSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVI 287

Query: 206 ---EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
               Q+     A    + MQ +G +P+ +T+ S+      L   R  + +HG+I R  WF
Sbjct: 288 GGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRH-WF 346

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            +D+    A+V MYAK G +  +  VF  +  +D +SWNT+I   + +G   EA+ +F+ 
Sbjct: 347 FQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFRE 406

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKC 381
           M +   + PN  T+  +L   SH   + +G+ I   + ++  +  D    +C+VD+  + 
Sbjct: 407 MVDSG-VRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRA 465

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAII 406
           GR+++A     ++P   ++  W A++
Sbjct: 466 GRLEEAYEFIKKMPIEPTAGAWGALL 491


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/660 (37%), Positives = 394/660 (59%), Gaps = 3/660 (0%)

Query: 47   GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            G+ IH  V+K+GF+  V V  +LL MY   G +  A  +F  MP +D  SWN++++ +  
Sbjct: 370  GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 429

Query: 107  SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
             G +++AL +L  M   G S++ +T  S L  C   D    G ++H  +V  GL +N  +
Sbjct: 430  DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 489

Query: 167  SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
             N L++MY K G M  + RV  QM  RDVV+WN++I  Y +  DP  A   F TM+  G+
Sbjct: 490  GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 549

Query: 227  QPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
              + +T+VS+ S      D     + +H +I+  G F  D  + N+++ MYAK G ++S+
Sbjct: 550  SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG-FESDEHVKNSLITMYAKCGDLSSS 608

Query: 286  CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              +F GL  +++I+WN ++   A +G   E +++   M     ++ +Q ++   L A + 
Sbjct: 609  QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG-VSLDQFSFSEGLSAAAK 667

Query: 346  VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            +  L +G ++H   +K     D F+     DMY KCG I + + +       S   WN +
Sbjct: 668  LAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNIL 727

Query: 406  ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
            IS  G HG  ++    F +ML+ G++P H+TFVSLLTACSH GLV +G  Y+ M+  +FG
Sbjct: 728  ISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFG 787

Query: 466  IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
            ++P ++H  C++DL GR+G L  A  FI  MP++P+  +W +LL +C+IHGN++ G  A+
Sbjct: 788  LEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAA 847

Query: 526  DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
            + L +++ E+   YVL SN++A  G+WE V+ VR     + +KK    S +++ +KV  F
Sbjct: 848  ENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSF 907

Query: 586  YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
              G+RTHP+  +IY +L ++   +K  GYV D S  LQD +E++KEH L +HSERLA+A+
Sbjct: 908  GIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAY 967

Query: 646  GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             ++S+P  S ++IFKNLR+C DCH+  KF+S++  R I++RD  RFHHF+ G+CSC DYW
Sbjct: 968  ALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 161/546 (29%), Positives = 272/546 (49%), Gaps = 39/546 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S  VR G   E ++ F++     G++P  +    ++ AC        +G ++H  V K
Sbjct: 144 MMSGIVRVGLYLEGME-FFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 202

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV+V+ ++LH+Y  +GL + +RK+F++MP R+  SW +++ GY   G   E +DI
Sbjct: 203 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 262

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +  L                         G  I   +VK GLE  L V N+LI+M   
Sbjct: 263 YKDESL-------------------------GRQIIGQVVKSGLESKLAVENSLISMLGS 297

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G + +A  +FDQM ERD +SWNSI AAY Q+     +   F+ M++   + +  T+ +L
Sbjct: 298 MGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTL 357

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++  ++  +  R +HG +++ G F   V + N ++ MYA  G    A  VF+ +P KD
Sbjct: 358 LSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKD 416

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN+L+  +  +G + +A+ +   M    + + N  T+ S L A        +G  +H
Sbjct: 417 LISWNSLMASFVNDGRSLDALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILH 475

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             V+ + L ++  +   LV MYGK G + ++  +  Q+PR   V WNA+I  +      D
Sbjct: 476 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYG 474
           KAL  F+ M  EGV  ++IT VS+L+AC   G + E  +  H  ++   F    H+K+  
Sbjct: 536 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN-- 593

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEVD 532
            ++ ++ + G L  + +    +  R +   W A+L A   HG+ E  L  V+  R F V 
Sbjct: 594 SLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS 652

Query: 533 SENVGY 538
            +   +
Sbjct: 653 LDQFSF 658



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 237/476 (49%), Gaps = 9/476 (1%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G++I   V+K G E  + V  SL+ M    G  + A  +FD M  RD+ SWN++ + Y Q
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +G+  E+  I   MR     ++  TV+++L V    D+   G  IH  +VK G +  + V
Sbjct: 329 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 388

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N L+ MYA  G    A  VF QM  +D++SWNS++A++      + A G   +M  +G 
Sbjct: 389 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
             + +T  S  +     +     R +HG ++  G F    IIGNA+V MY K+G ++ + 
Sbjct: 449 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQ-IIGNALVSMYGKIGEMSESR 507

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            V   +P +DV++WN LI GYA++    +A+  FQ M     ++ N  T VS+L A    
Sbjct: 508 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLP 566

Query: 347 G-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           G  L +G  +HA ++      D  V   L+ MY KCG +  +  LF  +   + + WNA+
Sbjct: 567 GDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAM 626

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ++ +  HG G++ L    +M   GV  D  +F   L+A +   ++ EGQ+  H +  + G
Sbjct: 627 LAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ-LHGLAVKLG 685

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI--WGALLGACRIHGNME 519
            +     +    D++ + G +G     ++ +P   + S+  W  L+ A   HG  E
Sbjct: 686 FEHDSFIFNAAADMYSKCGEIG---EVVKMLPPSVNRSLPSWNILISALGRHGYFE 738



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 225/468 (48%), Gaps = 34/468 (7%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G+ +H   +K      V    +L++MY +FG    AR LFD MPVR+  SWN M+SG  +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLF 165
            G  +E ++   +M   G+      +AS++  C RS ++   G+ +H ++ K GL  +++
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           VS  ++++Y  +G++  + +VF++M +R+VVSW S++  Y    +P              
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEP-------------- 256

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
                        ++    D    R + G +++ G     + + N+++ M   +G ++ A
Sbjct: 257 -----------EEVIDIYKDESLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYA 304

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F+ +  +D ISWN++   YAQNG   E+  +F +M   ++   N  T  ++L    H
Sbjct: 305 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD-EVNSTTVSTLLSVLGH 363

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATC--LVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           V   + G  IH  V+K  + FD  V  C  L+ MY   GR  +A  +F Q+P    + WN
Sbjct: 364 VDHQKWGRGIHGLVVK--MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 421

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           ++++     G+   AL     M+  G   +++TF S L AC       +G R  H +   
Sbjct: 422 SLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVV 480

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G+  +      +V ++G+ G +  +   +  MP R D   W AL+G 
Sbjct: 481 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 527



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 168/366 (45%), Gaps = 30/366 (8%)

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           +G  +H   VK  +  ++  +N LINMY KFG ++ A  +FD M  R+ VSWN++++   
Sbjct: 90  TGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGWFMED 265
           +    +    FF  M   GI+P    + SL +   +     R    VHGF+ + G  + D
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSG-LLSD 208

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V +  A++ +Y   G+++ +  VFE +P ++V+SW +L+ GY+  G   E I++++  +E
Sbjct: 209 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK--DE 266

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
                                     G +I  +V+K+ L   + V   L+ M G  G +D
Sbjct: 267 S------------------------LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVD 302

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A  +F Q+    ++ WN+I + +  +G  +++   F  M       +  T  +LL+   
Sbjct: 303 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 362

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H      G R  H +  + G    +     ++ ++  AG    A+   + MP + D   W
Sbjct: 363 HVDHQKWG-RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISW 420

Query: 506 GALLGA 511
            +L+ +
Sbjct: 421 NSLMAS 426



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N  NP    +  I   +S +     G  +HA  +K  +   V     L++MY K GR+  
Sbjct: 68  NHWNPEISCFDQI--GFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKP 125

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  +P  + V WN ++S     G   + + FFR+M D G++P      SL+TAC  
Sbjct: 126 ARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGR 185

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           SG +       H    + G+   +     ++ L+G  G +  +    + MP R   S W 
Sbjct: 186 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVS-WT 244

Query: 507 ALL 509
           +L+
Sbjct: 245 SLM 247



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 35/239 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-------------------------TLTSGLRP-----D 30
           +I++Y +CG LS + D F                             L S +R      D
Sbjct: 595 LITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLD 654

Query: 31  FYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            ++F   L A   L    +G+++H   +KLGFE D F+  +   MY + G      K+  
Sbjct: 655 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 714

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
               R   SWN +IS   + G   E      EM   G+    +T  S+L  C+    +  
Sbjct: 715 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 774

Query: 148 GLLIHLYIVKH-GLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           GL  +  I +  GLE  +     +I++  + G +  A     +M M+ + + W S++A+
Sbjct: 775 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLAS 833


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/718 (36%), Positives = 415/718 (57%), Gaps = 32/718 (4%)

Query: 18   FYQFTLTSGLRPDFYTFPPVLKACRNLVDG----KKIHCSVLKLGFEWDVFVAASLLHMY 73
             ++  L+  + P  +T   V  AC ++  G    K++H   L+ G +   +   +L+ MY
Sbjct: 420  LFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMY 478

Query: 74   CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
             R G  N A+ LF     +D  SWN +IS   Q+    EAL  +  M ++GV  D +T+A
Sbjct: 479  ARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLA 538

Query: 134  SILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            S+LP C++ + +  G  IH Y +++G L  N FV   L++MY      +    VFD ++ 
Sbjct: 539  SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR 598

Query: 193  RDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            R V  WN+++A Y ++     A   F  M  ++   P+  T  S+     +     +   
Sbjct: 599  RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 252  VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
            +HG+I++RG F +D  + NA++DMY+++G +  +  +F  +  +D++SWNT+ITG    G
Sbjct: 659  IHGYIVKRG-FGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCG 717

Query: 312  LASEAIEVFQMMEECN-----------------EINPNQGTYVSILPAYSHVGALRQGIK 354
               +A+ +   M+                       PN  T +++LP  + + AL +G +
Sbjct: 718  RYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKE 777

Query: 355  IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            IHA  +K  L  DV V + LVDMY KCG ++ A  +F Q+P  + + WN +I  +G+HG+
Sbjct: 778  IHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGK 837

Query: 415  GDKALNFFRQMLDEG------VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
            G++AL  FR M   G      +RP+ +T++++  ACSHSG+V EG   FH M+   G++P
Sbjct: 838  GEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEP 897

Query: 469  HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDR 527
               HY C+VDL GR+G +  A+  I  MP   +    W +LLGACRIH ++E G +A+  
Sbjct: 898  RGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKH 957

Query: 528  LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
            LF ++     +YVLMSNIY++ G W+    VR   ++ G++K PG S IE  ++V  F +
Sbjct: 958  LFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLS 1017

Query: 588  GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            G+ +HP+ +++++ L  L+ +M+  GYVPD S VL +V+++EKE +L  HSERLAIAFG+
Sbjct: 1018 GDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGL 1077

Query: 648  ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +++PP + I++ KNLRVC DCH  TK IS+I +REII+RD  RFHHF +G CSCGDYW
Sbjct: 1078 LNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/514 (29%), Positives = 253/514 (49%), Gaps = 27/514 (5%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D + FP VLKA   + D   GK+IH  V K G      V VA SL++MY + G    AR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR-SD 143
           +FDD+P RD  SWN+MI+  C+      +L +   M  E V     T+ S+   C+    
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G  +H Y +++G +   + +N L+ MYA+ G +  A  +F     +D+VSWN++I+
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           +  Q++    A  +   M   G++PD +TL S+    +QL   R  R +H + +R G  +
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI 567

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
           E+  +G A+VDMY           VF+G+  + V  WN L+ GYA+N    +A+ +F  M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
              +E  PN  T+ S+LPA            IH  ++K     D +V   L+DMY + GR
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGR 687

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML----------------D 427
           ++ + ++F ++ +   V WN +I+   + G+ D ALN   +M                 D
Sbjct: 688 VEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDD 747

Query: 428 EGV--RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            GV  +P+ +T +++L  C+    + +G+   H    +  +   +     +VD++ + G 
Sbjct: 748 GGVPFKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQKLAMDVAVGSALVDMYAKCGC 806

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           L +A      MP+R +   W  L+ A  +HG  E
Sbjct: 807 LNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGE 839



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 157/340 (46%), Gaps = 43/340 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           +++ Y R     +A+  F +    S   P+  TF  VL A   C+   D + IH  ++K 
Sbjct: 607 LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKR 666

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D +V  +L+ MY R G   +++ +F  M  RD  SWN MI+G    G   +AL++L
Sbjct: 667 GFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLL 726

Query: 118 DEMRLE----------------GVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHG 159
            EM+                  GV   P  +T+ ++LP CA    +  G  IH Y VK  
Sbjct: 727 HEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQK 786

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           L  ++ V + L++MYAK G +  A RVFDQM  R+V++WN +I AY        A   F 
Sbjct: 787 LAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFR 846

Query: 220 TMQQAG------IQPDLLTLVSLTSIVAQ-------LNDCRNSRSVHGFIMRRGWFMEDV 266
            M   G      I+P+ +T +++ +  +        L+     ++ HG   R   +    
Sbjct: 847 IMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYA--- 903

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLI 304
                +VD+  + G +  A  +   +P  +  V +W++L+
Sbjct: 904 ----CLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLL 939



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 4/256 (1%)

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R    W  ++ +   S+    A   +  M  A   PD     ++    A ++D    + +
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 253 HGFIMRRGWF-MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           H  + + G      V + N++V+MY K G + +A  VF+ +P +D +SWN++I    +  
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFV 370
               ++ +F++M   N ++P   T VS+  A SHV G +R G ++HA  ++N      + 
Sbjct: 413 EWELSLHLFRLMLSEN-VDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYT 470

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              LV MY + GR++DA +LF        V WN +IS    + + ++AL +   M+ +GV
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV 530

Query: 431 RPDHITFVSLLTACSH 446
           RPD +T  S+L ACS 
Sbjct: 531 RPDGVTLASVLPACSQ 546


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/660 (37%), Positives = 394/660 (59%), Gaps = 3/660 (0%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G+ IH  V+K+GF+  V V  +LL MY   G +  A  +F  MP +D  SWN++++ +  
Sbjct: 280 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 339

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            G +++AL +L  M   G S++ +T  S L  C   D    G ++H  +V  GL +N  +
Sbjct: 340 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 399

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N L++MY K G M  + RV  QM  RDVV+WN++I  Y +  DP  A   F TM+  G+
Sbjct: 400 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 459

Query: 227 QPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
             + +T+VS+ S      D     + +H +I+  G F  D  + N+++ MYAK G ++S+
Sbjct: 460 SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG-FESDEHVKNSLITMYAKCGDLSSS 518

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F GL  +++I+WN ++   A +G   E +++   M     ++ +Q ++   L A + 
Sbjct: 519 QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG-VSLDQFSFSEGLSAAAK 577

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +  L +G ++H   +K     D F+     DMY KCG I + + +       S   WN +
Sbjct: 578 LAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNIL 637

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           IS  G HG  ++    F +ML+ G++P H+TFVSLLTACSH GLV +G  Y+ M+  +FG
Sbjct: 638 ISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFG 697

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           ++P ++H  C++DL GR+G L  A  FI  MP++P+  +W +LL +C+IHGN++ G  A+
Sbjct: 698 LEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAA 757

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           + L +++ E+   YVL SN++A  G+WE V+ VR     + +KK    S +++ +KV  F
Sbjct: 758 ENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSF 817

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
             G+RTHP+  +IY +L ++   +K  GYV D S  LQD +E++KEH L +HSERLA+A+
Sbjct: 818 GIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAY 877

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            ++S+P  S ++IFKNLR+C DCH+  KF+S++  R I++RD  RFHHF+ G+CSC DYW
Sbjct: 878 ALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 283/546 (51%), Gaps = 14/546 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S  VR G   E ++ F++     G++P  +    ++ AC        +G ++H  V K
Sbjct: 29  MMSGIVRVGLYLEGME-FFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 87

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV+V+ ++LH+Y  +GL + +RK+F++MP R+  SW +++ GY   G   E +DI
Sbjct: 88  SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 147

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR EGV  +  +++ ++  C    +   G  I   +VK GLE  L V N+LI+M   
Sbjct: 148 YKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGS 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G + +A  +FDQM ERD +SWNSI AAY Q+     +   F+ M++   + +  T+ +L
Sbjct: 208 MGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTL 267

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++  ++  +  R +HG +++ G F   V + N ++ MYA  G    A  VF+ +P KD
Sbjct: 268 LSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKD 326

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN+L+  +  +G + +A+ +   M    + + N  T+ S L A        +G  +H
Sbjct: 327 LISWNSLMASFVNDGRSLDALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILH 385

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             V+ + L ++  +   LV MYGK G + ++  +  Q+PR   V WNA+I  +      D
Sbjct: 386 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 445

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYG 474
           KAL  F+ M  EGV  ++IT VS+L+AC   G + E  +  H  ++   F    H+K+  
Sbjct: 446 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN-- 503

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEVD 532
            ++ ++ + G L  + +    +  R +   W A+L A   HG+ E  L  V+  R F V 
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS 562

Query: 533 SENVGY 538
            +   +
Sbjct: 563 LDQFSF 568



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 223/443 (50%), Gaps = 9/443 (2%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +FG    AR LFD MPVR+  SWN M+SG  + G  +E ++   +M   G+      
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 132 VASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           +AS++  C RS ++   G+ +H ++ K GL  +++VS  ++++Y  +G++  + +VF++M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +R+VVSW S++  Y    +P      +  M+  G+  +  ++  + S    L D    R
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            + G +++ G     + + N+++ M   +G ++ A  +F+ +  +D ISWN++   YAQN
Sbjct: 181 QIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   E+  +F +M   ++   N  T  ++L    HV   + G  IH  V+K  + FD  V
Sbjct: 240 GHIEESFRIFSLMRRFHD-EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK--MGFDSVV 296

Query: 371 ATC--LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
             C  L+ MY   GR  +A  +F Q+P    + WN++++     G+   AL     M+  
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 356

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G   +++TF S L AC       +G R  H +    G+  +      +V ++G+ G +  
Sbjct: 357 GKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415

Query: 489 AHNFIQNMPVRPDASIWGALLGA 511
           +   +  MP R D   W AL+G 
Sbjct: 416 SRRVLLQMP-RRDVVAWNALIGG 437



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 35/239 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-------------------------TLTSGLRP-----D 30
           +I++Y +CG LS + D F                             L S +R      D
Sbjct: 505 LITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLD 564

Query: 31  FYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            ++F   L A   L    +G+++H   +KLGFE D F+  +   MY + G      K+  
Sbjct: 565 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 624

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
               R   SWN +IS   + G   E      EM   G+    +T  S+L  C+    +  
Sbjct: 625 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 684

Query: 148 GLLIHLYIVKH-GLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           GL  +  I +  GLE  +     +I++  + G +  A     +M M+ + + W S++A+
Sbjct: 685 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLAS 743


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/552 (43%), Positives = 363/552 (65%), Gaps = 33/552 (5%)

Query: 186 VFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +F++ +++ +V SWNS+IA   +S D + A   F++M++  ++P+  T        + L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII---------------------- 282
           D  + R  H   +  G F  D+ + +A+VDMY+K G +                      
Sbjct: 91  DLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 283 ---------NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
                    + A  VF+G+  +DVISWN++I  YAQNG+++E++E+F  M +  EIN N 
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T  ++L A +H G+ R G  IH +VIK  L  +VFV T ++DMY KCG+++ A   F +
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +   +   W+A+++ +G+HG   +AL  F +M   GV+P++ITFVS+L ACSH+GL+ EG
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
             +F  M  EF ++P ++HYGCMVDL GRAG+L  A + I+ M +RPD  +WGALLGACR
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 389

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           +H N++LG +++ +LFE+D +N GYYVL+SNIYA+ G+WE V+ +R L ++ GL K PG+
Sbjct: 390 MHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF 449

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S +++  +V +F  G+R HP++EKIY+ L  L+ K++ +GYVPD + VL DV  +EKE +
Sbjct: 450 SLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMV 509

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           L  HSE+LA+AFGI+++ P + I I KNLRVCGDCH   KFIS+I +REI+VRDS RFHH
Sbjct: 510 LRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHH 569

Query: 694 FKDGICSCGDYW 705
           F+DG+CSCGDYW
Sbjct: 570 FRDGLCSCGDYW 581



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 59/351 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+   R G   EA+  F      S L+P+  TFP  +K+C  L+D   G++ H   L  
Sbjct: 47  VIAELARSGDSVEALRAFSSMRKLS-LKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIF 105

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD----------------------------- 88
           GFE D+FV+++L+ MY + G    AR LFD+                             
Sbjct: 106 GFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVF 165

Query: 89  --MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNI 145
             M  RD  SWN++I+ Y Q+G + E+++I   M  +G ++ + +T++++L  CA S + 
Sbjct: 166 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 225

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH  ++K GLE N+FV  ++I+MY K G +  A + FD+M E++V SW++++A Y
Sbjct: 226 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 285

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-- 263
                   A   F  M  AG++P+ +T VS+ +  +           H  ++  GW    
Sbjct: 286 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS-----------HAGLLEEGWHWFK 334

Query: 264 -----EDVIIG----NAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
                 DV  G      +VD+  + G +  A  + +G+ ++ D + W  L+
Sbjct: 335 AMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 385



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 195/411 (47%), Gaps = 45/411 (10%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWN++I+   +SG++VEAL     MR   +  +  T    +  C+   ++ SG   H   
Sbjct: 43  SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQA 102

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +  G E +LFVS+ L++MY+K G +R A  +FD++  R++VSW S+I  Y Q++D   A 
Sbjct: 103 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 162

Query: 216 GFFTTM---------------QQAGIQPDLLTL--------------VSLTSIV---AQL 243
             F  M                Q G+  + + +              V+L++++   A  
Sbjct: 163 RVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHS 222

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
              R  + +H  +++ G    +V +G +++DMY K G +  A   F+ +  K+V SW+ +
Sbjct: 223 GSQRLGKCIHDQVIKMG-LESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 281

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           + GY  +G A EA+EVF  M     + PN  T+VS+L A SH G L +G      +    
Sbjct: 282 VAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHE- 339

Query: 364 LCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
             FDV        C+VD+ G+ G + +A  L   +  R   V W A++    +H   D  
Sbjct: 340 --FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG 397

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEEFGIKP 468
               R++ +  + P +  +  LL+   + +G   + +R   +M+    +KP
Sbjct: 398 EISARKLFE--LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKP 446



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 13/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+VY + G  +E+++ F++      +  +  T   VL AC +      GK IH  V+K+
Sbjct: 179 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 238

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +VFV  S++ MYC+ G   +ARK FD M  ++  SW+AM++GY   G+A EAL++ 
Sbjct: 239 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 298

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLIN 172
            EM + GV  + IT  S+L  C+ +  +  G      + H + V+ G+E        +++
Sbjct: 299 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH----YGCMVD 354

Query: 173 MYAKFGMMRHALRVFDQMMER-DVVSWNSIIAA 204
           +  + G ++ A  +   M  R D V W +++ A
Sbjct: 355 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 387


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/712 (38%), Positives = 408/712 (57%), Gaps = 16/712 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEW 61
           I+   + G L  A++ F +  L  G+RP   T    L  C  +   + IH  V + G E 
Sbjct: 200 IAANAQSGDLDMALELFQRMQL-EGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQ 258

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            + V+ +L   Y R G  + A+++FD    RD  SWNAM+  Y Q G+  EA  +   M 
Sbjct: 259 TLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EG+    +T+ +    C+   ++  G +IH   ++ GL+ ++ + N L++MY + G   
Sbjct: 319 HEGIPPSKVTLVNASTGCS---SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +F+ +   + VSWN++IA   Q      A   F  MQ  G+ P   T ++L   VA
Sbjct: 376 EARHLFEGI-PGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVA 434

Query: 242 ----QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD- 296
               +       R +H  I+  G+  E  I G AVV MYA  G I+ A A F+   ++D 
Sbjct: 435 SNPEEARAMAEGRKLHSRIVSCGYASEPAI-GTAVVKMYASCGAIDEAAASFQRGAMEDR 493

Query: 297 --VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
             V+SWN +I+  +Q+G    A+  F+ M+  + + PNQ T V++L A +   AL +G+ 
Sbjct: 494 HDVVSWNAIISSLSQHGHGKRALGFFRRMD-LHGVAPNQITCVAVLDACAGAAALTEGVI 552

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           +H  +  + +  +VFVAT L  MYG+CG ++ A  +F +V      V +NA+I+ +  +G
Sbjct: 553 VHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F +M  EG RPD  +FVS+L+ACSH GL  EG   F  M++ +GI P   HY
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHY 672

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            C VD+ GRAG L  A   I+ M V+P   +W  LLGACR + +++ G +A+  + E+D 
Sbjct: 673 ACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDP 732

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
            +   YV++SNI A  GKW+   EVR+    RGL+K  G S IE+ ++V  F  G+R+HP
Sbjct: 733 GDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHP 792

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + E+IY EL  L A+++ +GYVPD   VL+ V+E EKE +L  HSERLAIA G++SS   
Sbjct: 793 RSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD 852

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + +++ KNLRVC DCHN TKFIS+I  +EI+VRD++RFHHF DG CSCGDYW
Sbjct: 853 T-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  288 bits (738), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 275/530 (51%), Gaps = 40/530 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y   G+   A+  F++     G+R D  TF  VLKAC  L D   G+ IH  +++ 
Sbjct: 99  IITAYTEHGQAKRAIWMFHRMQ-QEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVES 157

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E    +A  LLH+Y   G    A  LF+ M  RD  SWNA I+   QSG+   AL++ 
Sbjct: 158 GLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELF 216

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+LEGV    IT+   L VCA+   I     IH  + + GLE  L VS  L + YA+ 
Sbjct: 217 QRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARL 273

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD+  ERDVVSWN+++ AY Q      A   F  M   GI P  +TLV+ +
Sbjct: 274 GHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNAS 333

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + L   R  R +H   + +G    D+++GNA++DMY + G    A  +FEG+P  + 
Sbjct: 334 TGCSSL---RFGRMIHACALEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNA 388

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS----HVGALRQGI 353
           +SWNT+I G +Q G    A+E+FQ M +   + P + TY+++L A +       A+ +G 
Sbjct: 389 VSWNTMIAGSSQKGQMKRALELFQRM-QLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 410
           K+H+R++      +  + T +V MY  CG ID+A + F +     R   V WNAIIS   
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG G +AL FFR+M   GV P+ IT V++L AC+ +  ++EG            +  HL
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG----------VIVHDHL 557

Query: 471 KHYG---------CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +H G          +  ++GR G L  A    + + V  D  I+ A++ A
Sbjct: 558 RHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 154/483 (31%), Positives = 256/483 (53%), Gaps = 21/483 (4%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R L  G++IH  ++ LG E ++     LL +Y +        ++F  + VRD  SW  +I
Sbjct: 43  RLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTII 100

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           + Y + G A  A+ +   M+ EGV  D +T  ++L  CAR  ++  G  IH +IV+ GLE
Sbjct: 101 TAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLE 160

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
               ++N L+++Y   G +  A+ +F++ MERD+VSWN+ IAA  QS D   A   F  M
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFER-MERDLVSWNAAIAANAQSGDLDMALELFQRM 219

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q  G++P  +TLV   S+ A++   R +R++H  I+R     + +++  A+   YA+LG 
Sbjct: 220 QLEGVRPARITLVITLSVCAKI---RQARAIHS-IVRESGLEQTLVVSTALASAYARLGH 275

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSIL 340
           ++ A  VF+    +DV+SWN ++  YAQ+G  SEA  +F +M+ E   I P++   V+++
Sbjct: 276 LDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE--GIPPSK---VTLV 330

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A +   +LR G  IHA  ++  L  D+ +   L+DMY +CG  ++A  LF  +P  ++V
Sbjct: 331 NASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAV 389

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS----HSGLVSEGQRY 456
            WN +I+     GQ  +AL  F++M  EG+ P   T+++LL A +     +  ++EG R 
Sbjct: 390 SWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEG-RK 448

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN--MPVRPDASIWGALLGACRI 514
            H      G          +V ++   G +  A    Q   M  R D   W A++ +   
Sbjct: 449 LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQ 508

Query: 515 HGN 517
           HG+
Sbjct: 509 HGH 511



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 7/234 (2%)

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           V +L A      L QG +IHAR++   L  +  +   L+ +Y KC  + D   +F ++  
Sbjct: 33  VRLLRAAGDDRLLSQGRRIHARIVS--LGLEEELGNHLLRLYLKCESLGDVEEVFSRLEV 90

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
                W  II+ +  HGQ  +A+  F +M  EGVR D +TF+++L AC+  G +S+G R 
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RS 149

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    E G++        ++ ++G  G +  A    + M    D   W A + A    G
Sbjct: 150 IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME--RDLVSWNAAIAANAQSG 207

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           ++++      R+ +++        L+  +     K      + S+ R+ GL++T
Sbjct: 208 DLDMALELFQRM-QLEGVRPARITLVITLSV-CAKIRQARAIHSIVRESGLEQT 259


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/619 (41%), Positives = 376/619 (60%), Gaps = 5/619 (0%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP R+  SW AMISG  Q+    EA+     MR+ G        +S +  CA   +I  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H   +K G+   LFV +NL +MY+K G M  A +VF++M  +D VSW ++I  Y + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            +   A   F  M    +  D   L S       L  C+  RSVH  +++ G F  D+ +
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG-FESDIFV 179

Query: 269 GNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           GNA+ DMY+K G + SA  VF G+    ++V+S+  LI GY +     + + VF  +   
Sbjct: 180 GNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR- 237

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I PN+ T+ S++ A ++  AL QG ++HA+V+K     D FV++ LVDMYGKCG ++ 
Sbjct: 238 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 297

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A+  F ++   + + WN+++S  G HG G  A+  F +M+D GV+P+ ITF+SLLT CSH
Sbjct: 298 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSH 357

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +GLV EG  YF+ M + +G+ P  +HY C++DL GRAG L  A  FI  MP  P+A  W 
Sbjct: 358 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 417

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           + LGACRIHG+ E+G +A+++L +++ +N G  VL+SNIYAN  +WE V  VR   RD  
Sbjct: 418 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 477

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +KK PG+S ++V  K  +F   + +HP+   IY++L  L  ++K+ GYVP    V  D++
Sbjct: 478 VKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMD 537

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           +  KE +L  HSER+A+AF +IS P   PI + KNLRVC DCH+  KFIS++T R+IIVR
Sbjct: 538 DSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVR 597

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D++RFHHF DG CSCGDYW
Sbjct: 598 DNSRFHHFTDGSCSCGDYW 616



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 212/422 (50%), Gaps = 15/422 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS   +  + SEA+  F    +  G  P  + F   ++AC +L     GK++HC  LK 
Sbjct: 12  MISGLSQNSKFSEAIRTFCGMRIC-GEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKF 70

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   ++FV ++L  MY + G    A K+F++MP +D  SW AMI GY + G   EAL   
Sbjct: 71  GIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAF 130

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  E V++D   + S L  C        G  +H  +VK G E ++FV N L +MY+K 
Sbjct: 131 KKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKA 190

Query: 178 GMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           G M  A  VF    E R+VVS+  +I  Y ++         F  +++ GI+P+  T  SL
Sbjct: 191 GDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 250

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A          +H  +M+   F ED  + + +VDMY K G++  A   F+ +    
Sbjct: 251 IKACANQAALEQGTQLHAQVMKIN-FDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPT 309

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            I+WN+L++ + Q+GL  +AI++F+ M +   + PN  T++S+L   SH G + +G+   
Sbjct: 310 EIAWNSLVSVFGQHGLGKDAIKIFERMVD-RGVKPNAITFISLLTGCSHAGLVEEGLDYF 368

Query: 357 ARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGI 411
             + K    + V       +C++D+ G+ GR+ +A     ++P   ++  W + +    I
Sbjct: 369 YSMDKT---YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 425

Query: 412 HG 413
           HG
Sbjct: 426 HG 427


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/710 (38%), Positives = 401/710 (56%), Gaps = 27/710 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           +IS Y        + +C+           D +  P +LKAC     G   +++H    K 
Sbjct: 58  LISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKN 117

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DVFV  +L++MY + G    AR +FD MP RD  SW  M+  Y +S    EAL ++
Sbjct: 118 GFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLV 177

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS--NNLINMYA 175
            EM+  GV +  + + S++ V     ++ SG  +H YIV++  +  + VS    LI+MY 
Sbjct: 178 REMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYC 237

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A R+FD++ +R VVSW  +IA   +S         F  M +  + P+ +TL+S
Sbjct: 238 KGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLS 297

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L +    +      +  H +++R G+ M   ++  A++DMY K G +  A A+F G+  K
Sbjct: 298 LITECGFVGTLDLGKWFHAYLLRNGFGMSLALV-TALIDMYGKCGQVGYARALFNGVKKK 356

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV  W+ LI+ YA      +   +F  M   N++ PN  T VS+L   +  GAL  G   
Sbjct: 357 DVKIWSVLISAYAHVSCMDQVFNLFVEMLN-NDVKPNNVTMVSLLSLCAEAGALDLGKWT 415

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA + ++ L  DV + T L++MY KCG +  A SLF +  +     WN +++   +HG G
Sbjct: 416 HAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCG 475

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL  F +M   GV P+ ITFVS+  ACSHSGL                    ++HYGC
Sbjct: 476 KEALELFSEMESHGVEPNDITFVSIFHACSHSGL--------------------MEHYGC 515

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL GRAGHL  AHN I+NMP+RP+  IWGALL AC++H N+ LG VA+ ++ E+D +N
Sbjct: 516 LVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQN 575

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            GY VL SNIYA+  +W  V  VR      G+KK PG S IEV+  V  F +G++   + 
Sbjct: 576 CGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQT 635

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            K+Y+ +  +  K++  GY P+ + VL +++E+EKE  L+ HSE+LA AFG+IS+ P +P
Sbjct: 636 TKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTP 695

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLR+C DCH  TK +S+I  R IIVRD NRFHHF +G CSC  YW
Sbjct: 696 IRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 418/710 (58%), Gaps = 17/710 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S   + G+++ A+D      L      D      V+++C  L    +G++IH  + ++
Sbjct: 9   LLSKRQQLGQIAAAID-----ALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRV 63

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V+  L+ MY + G    AR +F+  P ++  SW  +I+   Q G + EAL + 
Sbjct: 64  GLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALF 123

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM  +G+    ++  + +  C+     L +G  +H  + ++G +  +  + +L++MY+K
Sbjct: 124 YEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSK 183

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  +++ F+ M E + VSWN++IAA+ +    + A      M   GI+   +T ++L
Sbjct: 184 CGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITL 243

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S   Q +  +++R +H  I+R G F +DV+  N +++MY K G +  A A+F+ +   D
Sbjct: 244 MSAYDQPSQLKSARYIHDCILRTG-FDQDVV--NVILNMYGKCGCLQDAEAMFKSMSQPD 300

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VI+WNT+I  Y+Q+G  SEA+  +++M+E   + P+  TYVS++ A + +G +  G ++H
Sbjct: 301 VIAWNTMIAAYSQHGHTSEALRFYELMQE-EGVVPDDYTYVSVIDACATLGDMEVGKQVH 359

Query: 357 ARVIKNCLCFDVF-VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
            R+      F V  +A  LV+MYGKCG +D A S+F +  + S V WNA+I  +  H   
Sbjct: 360 RRLGDRA--FQVTELANSLVNMYGKCGILDVARSIFDKTAKGS-VTWNAMIGAYAQHSHE 416

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +A   F  M  +G  P +ITF+S+L+AC+++GL  E   YF  MQ++ G++P   HYGC
Sbjct: 417 QQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGC 476

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MV+  G+AG L  A   IQ MP  PD   W + L  CR HG+M+ G  A+     +D E 
Sbjct: 477 MVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEA 536

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV ++ I+A+ G ++    +R L  DRG++K  G S I++   V  F  G++++P+ 
Sbjct: 537 STGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRS 596

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++I+DEL+ L  +MK  GY PD + V  DVE  +KE +L +HSERLAIAFGIIS+   +P
Sbjct: 597 KEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTP 656

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++I KNLRVCGDCH  TK  S+IT REIIVRDSNRFHHFK+G CSC D+W
Sbjct: 657 LRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/774 (35%), Positives = 414/774 (53%), Gaps = 106/774 (13%)

Query: 34  FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           F  +L+    + D   G+ +HC ++K G    V++  +L+  Y + G    A  +FD+MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMR----------------------------- 121
           ++ + SWN +ISGY + GN   +  +L EM                              
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 122 --LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK--- 176
              E V     TV+++L  CA +  +  G  IH ++VK GL   + V+ +L+NMYAK   
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 177 ----------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
                                        G    A   F++M +RD+VSWNS+I+ Y Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 209 NDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
              + A   F+ M  +  ++PD  TL S+ S  A L      + +H +I+R        +
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 268 IGNAVVDMYAK---------------------------------LGIINSACAVFEGLPV 294
            GNA++ MYAK                                 LG +  A  +F  L  
Sbjct: 313 -GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGI 353
           +DV++W  +I GY QNGL ++A+E+F++M   NE   PN  T  ++L   S +  L  G 
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLM--VNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGI 411
           +IHA  IK        V   L+ MY K G I+ A  +F  +P  +   V W ++I     
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQ 488

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG G +A+N F +ML  G++PDHIT+V +L+AC+H GLV +G++Y++MM E   I+P L 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CM+DL+GRAG L  A+ FI++MP+ PD   WG+LL +C+IH N +L  VA++RL  +
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLI 608

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           D  N G Y+ ++N+Y+  GKWE   + R L +DRG++K  G S I + N+V  F   +  
Sbjct: 609 DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVI 668

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ ++IY  +  +  ++K +G++PD   VL D+EE+ KE IL  HSE+LAIAFG++++P
Sbjct: 669 HPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTP 728

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             + ++I KNLRVC DCH+  KFIS++  REIIVRD+ RFHHFKDG CSC DYW
Sbjct: 729 ENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 172/389 (44%), Gaps = 48/389 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y + G   EA+  F +      L+PD +T   +L AC NL     GK+IH  +L+ 
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 58  GFEWDVFVAASLLHMYCRFG-------------------------------LANV--ARK 84
             E    V  +L+ MY + G                               L NV  AR+
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +F+ +  RD  +W AMI GY Q+G   +AL++   M  EG   +  T+A++L V +    
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIA 203
           +  G  IH   +K G      V+N LI MYAK G +  A RVFD    ++++VSW S+I 
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   F  M   G++PD +T V + S    +      R  +  +       
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIE 544

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
             +     ++D+Y + G++  A    E +P++ D I+W +L+     +    LA  A E 
Sbjct: 545 PTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAER 604

Query: 320 FQMMEECNEINP-NQGTYVSILPAYSHVG 347
             +      I+P N G Y+++   YS  G
Sbjct: 605 LLL------IDPGNSGAYLALANVYSACG 627


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/646 (39%), Positives = 378/646 (58%), Gaps = 38/646 (5%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           +W ++I  +       +AL    EMR  G   D     S+L  C    ++  G  +H +I
Sbjct: 72  AWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFI 131

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHAL------------------------------- 184
           V+ G++ +L+  N L+NMYAK   M   +                               
Sbjct: 132 VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG 191

Query: 185 -----RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
                RVF+ M  +DVVS+N+IIA Y QS     A      M    ++PD  TL S+  I
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            ++  D    + +HG+++R+G    DV IG+++VDMYAK   I  +  VF  L  +D IS
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN+L+ GY QNG  +EA+ +F+ M    ++ P    + S++PA +H+  L  G ++H  V
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTA-KVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           ++     ++F+A+ LVDMY KCG I  A  +F ++     V W AII  H +HG G +A+
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M  +GV+P+ + FV++LTACSH GLV E   YF+ M + +G+   L+HY  + DL
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADL 489

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  A+NFI  M V P  S+W  LL +C +H N+EL    ++++F VDSEN+G Y
Sbjct: 490 LGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAY 549

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VLM N+YA+ G+W+ + ++R   R +GL+K P  S IE+ NK   F +G+R+HP  +KI 
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKIN 609

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
           + L+ +  +M+  GYV D S VL DV+E+ K  +L  HSERLA+AFGII++ P + I++ 
Sbjct: 610 EFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVT 669

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KN+R+C DCH   KFIS+ITEREIIVRD++RFHHF  G CSCGDYW
Sbjct: 670 KNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 236/445 (53%), Gaps = 48/445 (10%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
            S+A+  F +    SG  PD   FP VLK+C  ++D   G+ +H  +++LG + D++   
Sbjct: 86  FSKALASFVEMR-ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGN 144

Query: 68  SLLHMYCR-------------------------------------FGLANVARKLFDDMP 90
           +L++MY +                                     FG+ +V R++F+ MP
Sbjct: 145 ALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSV-RRVFEVMP 203

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            +D  S+N +I+GY QSG   +AL ++ EM    +  D  T++S+LP+ +   +++ G  
Sbjct: 204 RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH Y+++ G++ ++++ ++L++MYAK   +  + RVF ++  RD +SWNS++A Y Q+  
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M  A ++P  +   S+    A L      + +HG+++ RG F  ++ I +
Sbjct: 324 YNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL-RGGFGSNIFIAS 382

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+VDMY+K G I +A  +F+ + V D +SW  +I G+A +G   EA+ +F+ M+    + 
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR-QGVK 441

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           PNQ  +V++L A SHVG + +       + K   L  ++     + D+ G+ G++++A +
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYN 501

Query: 390 LFYQ--VPRSSSVPWNAIISCHGIH 412
              +  V  + SV W+ ++S   +H
Sbjct: 502 FISKMCVEPTGSV-WSTLLSSCSVH 525



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 183/372 (49%), Gaps = 15/372 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y + G   +A+    +   T+ L+PD +T   VL      VD   GK+IH  V++ 
Sbjct: 213 IIAGYAQSGMYEDALRMVREMG-TTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK 271

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DV++ +SL+ MY +      + ++F  +  RD  SWN++++GY Q+G   EAL + 
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF 331

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M    V    +  +S++P CA    +  G  +H Y+++ G   N+F+++ L++MY+K 
Sbjct: 332 RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC 391

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A ++FD+M   D VSW +II  +        A   F  M++ G++P+ +  V++ 
Sbjct: 392 GNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVL 451

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + +     +      + +     +++    AV D+  + G +  A      + V+  
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPT 511

Query: 298 IS-WNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            S W+TL++    +    LA +  E +F +  E      N G YV +   Y+  G  ++ 
Sbjct: 512 GSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE------NMGAYVLMCNMYASNGRWKEM 565

Query: 353 IKIHARVIKNCL 364
            K+  R+ K  L
Sbjct: 566 AKLRLRMRKKGL 577


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/711 (37%), Positives = 419/711 (58%), Gaps = 14/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK--ACRNLVD-GKKIHCSVLKL 57
           +++ Y++ G L + +  F++     G+ P+ +TF  VL   A + +VD G+ +H   +K 
Sbjct: 128 LLTGYIQAGVLLDVMSLFFRMR-AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKF 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VFV  SL++MY + GL   AR +F  M  RD  SWN +++G   +G  +EAL + 
Sbjct: 187 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLF 246

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            + R     +   T ++++ +CA   ++     +H  ++KHG      V   L++ Y K 
Sbjct: 247 HDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKA 306

Query: 178 GMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           G +  AL VF  M   ++VVSW ++I    Q+ D   A   F+ M++ G+ P+ LT    
Sbjct: 307 GQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTY--- 363

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S +  +++      +H  +++  +     + G A++  Y+KL     A ++F+ +  KD
Sbjct: 364 -STILTVSEASFPPQIHAQVIKTNYECTPTV-GTALMVSYSKLCSTEEALSIFKMIDQKD 421

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGALRQGIKI 355
           V+SW+ ++T YAQ G  + A   F  M   + + PN+ T  S + A  S    +  G + 
Sbjct: 422 VVSWSAMLTCYAQAGDCNGATNAFIKMT-MHGLKPNEFTISSAIDACASPAAGVDLGRQF 480

Query: 356 HARVIKNCLCFDVF-VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           HA  IK+  C D   V++ LV MY + G I++A  +F +      + WN+++S +  HG 
Sbjct: 481 HAISIKH-RCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGY 539

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             KAL+ FRQM  EG+  D +TF+S++  C+H+GLV EGQ+YF +M  ++GI P + HY 
Sbjct: 540 SQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYA 599

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL+ RAG L    + I+ MP     +IW ALLGACR+H N+ELG +A+++L  ++  
Sbjct: 600 CMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPL 659

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   YVL+SNIY+  GKW+  DEVR L   + ++K  G S I++ NKV  F   +++HP 
Sbjct: 660 DSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPL 719

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            E+IY +LR +TAK+K  GY PD SFV  DV ED+KE +L  HSERLA+AFG+I++PP +
Sbjct: 720 SEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAA 779

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P+ IFKNLRV GD H   K +S+I +REI++RD  RFHHFK G+CSCGD+W
Sbjct: 780 PLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 150/542 (27%), Positives = 261/542 (48%), Gaps = 16/542 (2%)

Query: 37  VLKACRNLVD---GKKIHCSVLKLGFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           ++K C ++ D   GK++H   ++ G +  D+ V  SL+ MY  +      RK+F+ M  R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +  +W ++++GY Q+G  ++ + +   MR EGV  +P T +S+L + A    +  G  +H
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH 180

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K G    +FV N+L+NMYAK G++  A  VF +M  RD+VSWN+++A    +   +
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDL 240

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F   + +       T  ++ ++ A L     +R +H  +++ G+     ++  A+
Sbjct: 241 EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM-TAL 299

Query: 273 VDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +D Y K G ++ A  VF  +   ++V+SW  +I G  QNG    A  +F  M E + + P
Sbjct: 300 MDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE-DGVAP 358

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N  TY +IL     V       +IHA+VIK        V T L+  Y K    ++A+S+F
Sbjct: 359 NDLTYSTILT----VSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIF 414

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             + +   V W+A+++C+   G  + A N F +M   G++P+  T  S + AC+      
Sbjct: 415 KMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGV 474

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +  R FH +  +      L     +V ++ R G +  A    +    R D   W ++L  
Sbjct: 475 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDR-DLLSWNSMLSG 533

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY--ANVG-KWEGVDEVRSLARDRGLK 568
              HG  +  A+   R  EV+  ++     +S I   A+ G   EG      + RD G+ 
Sbjct: 534 YAQHGYSQ-KALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGIT 592

Query: 569 KT 570
            T
Sbjct: 593 PT 594



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 8/301 (2%)

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           L+ +  I   + D    + +H   +R G    D+ +G ++VDMY     +     VFEG+
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             ++V++W +L+TGY Q G+  + + +F  M     + PN  T+ S+L   +  G +  G
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRA-EGVWPNPFTFSSVLSMVASQGMVDLG 176

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA+ IK   C  VFV   L++MY KCG +++A  +F ++     V WN +++   ++
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236

Query: 413 GQGDKALNFF---RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           G+  +AL  F   R  +       + T ++L     H GL     R  H    + G   +
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLA----RQLHSSVLKHGFHSY 292

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
                 ++D + +AG L  A +    M    +   W A++  C  +G++ L A    R+ 
Sbjct: 293 GNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMR 352

Query: 530 E 530
           E
Sbjct: 353 E 353


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/709 (38%), Positives = 405/709 (57%), Gaps = 35/709 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y R G   EA++ F++     G RP+ +T+  VL+ C   V    GK+IH   +K 
Sbjct: 109 LISGYCRYGCDVEALELFWEMQY-EGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKT 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDI 116
            F+ + FV   L+ MY +      A  LF+  P  R+   W AM++GY Q+G+  +A++ 
Sbjct: 168 QFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIEC 227

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +MR EG+  +  T  SIL  C        G  +H  IV+ G   N+FV + L++MY+K
Sbjct: 228 FRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSK 287

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G + +A R+ + M   D VSWNS+I    +      A   F  M    ++ D  T  S+
Sbjct: 288 CGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSV 347

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  + + D RN+ SVH  I++ G F    ++ NA+VDMYAK G  + A  VFE +  KD
Sbjct: 348 LNCFSFVMDMRNAMSVHSLIVKTG-FEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKD 406

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISW +L+TG   NG   EA+ +F  M     I+P+Q    ++L A + +  L  G ++H
Sbjct: 407 VISWTSLVTGCVHNGSYEEALRLFCEMRIMG-IHPDQIVIAAVLSACAELTVLEFGKQVH 465

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A  +K+ L   + V   LV MY KCG I+DA  +F  +     + W A+I  +  +G+G 
Sbjct: 466 ANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR 525

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
                                        H+GLV  G+ YF  M+E +GIKP  +HY CM
Sbjct: 526 ----------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYACM 557

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GR+G L  A   +  M V+PDA++W ALL ACR+HGN+ELG  A++ LFE++ +N 
Sbjct: 558 IDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNA 617

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SN+Y+  GKWE   + R L + RG+ K PG S IE+++KV  F + +R+HP+  
Sbjct: 618 VPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTA 677

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY ++  +   +K  GYVPD +F L D++E+ KE  L  HSE+LA+AFG+++ PP +PI
Sbjct: 678 EIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPI 737

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IFKNLR+CGDCH   K++S +  R +I+RDSN FHHF++G CSC DYW
Sbjct: 738 RIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/450 (30%), Positives = 236/450 (52%), Gaps = 10/450 (2%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+  + A     Y   G  N ARKLF + P+R   +W+++ISGYC+ G  VEAL++  EM
Sbjct: 75  WNTMIGA-----YANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEM 129

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + EG   +  T  S+L VC+    +  G  IH + +K   + N FV   L++MYAK   +
Sbjct: 130 QYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCI 189

Query: 181 RHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
             A  +F+   + R+ V W +++  Y Q+ D   A   F  M+  GI+ +  T  S+ + 
Sbjct: 190 LEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTA 249

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
              ++ C     VHG I+R G F  +V +G+A+VDMY+K G +++A  + E + V D +S
Sbjct: 250 CGSISACGFGAQVHGCIVRSG-FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS 308

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN++I G  + GL  EA+ +F++M     +  ++ TY S+L  +S V  +R  + +H+ +
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIM-HLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLI 367

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K        V   LVDMY K G  D A  +F ++     + W ++++    +G  ++AL
Sbjct: 368 VKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEAL 427

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F +M   G+ PD I   ++L+AC+   ++  G++  H    + G+   L     +V +
Sbjct: 428 RLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQ-VHANFLKSGLGSSLSVDNSLVSM 486

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + + G +  A+    +M ++ D   W AL+
Sbjct: 487 YAKCGCIEDANKVFDSMEIQ-DVITWTALI 515



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 37/280 (13%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI------------------------- 304
           N V+   +K G ++ A  +F+ +P +D  SWNT+I                         
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 305 ------TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
                 +GY + G   EA+E+F  M+   E  PNQ T+ S+L   S    L +G +IHA 
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGE-RPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
            IK     + FV T LVDMY KC  I +A  LF   P + + V W A+++ +  +G G K
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           A+  FR M  EG+  +  TF S+LTAC S S      Q +  +++  FG    +     +
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVG--SAL 281

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           VD++ + G L  A   ++ M V  D   W +++  C   G
Sbjct: 282 VDMYSKCGDLSNARRMLETMEV-DDPVSWNSMIVGCVRQG 320


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/669 (40%), Positives = 378/669 (56%), Gaps = 40/669 (5%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+V ++  +     R+     AR LFD MP RD  SWNAM+SGY Q+G   EA +I DEM
Sbjct: 114 WNVMISGCV-----RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 168

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
             +    + I+   +L    ++  I         + +   ++ L   N ++  Y K   +
Sbjct: 169 PCK----NSISWNGMLAAYVQNGRIEDAR----RLFESKADWELISWNCMMGGYVKRNRL 220

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF-----------TTMQQAGIQPD 229
             A  +FD+M ERD VSWN++I+ Y Q+ + + A   F           T M    +Q  
Sbjct: 221 VDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNG 280

Query: 230 LL-------------TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           +L               VS  +I+A    C+  R      +      ++V   N ++  Y
Sbjct: 281 MLDEARRVFDGMPEKNSVSWNAIIAGYVQCK--RMDQARELFEAMPCQNVSSWNTMITGY 338

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           A+ G I  A   F+ +P +D ISW  +I GYAQ+G   EA+ +F  M+   E   N+ T+
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTF 397

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S L   + + AL  G ++H RV+K  L    +V   L+ MY KCG IDDA  +F  +  
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE 457

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V WN +I+ +  HG G +AL  F  M   G+ PD +T V +L+ACSH+GLV +G  Y
Sbjct: 458 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 517

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F+ M +++GI  + KHY CM+DL GRAG L  A N ++NMP  PDA+ WGALLGA RIHG
Sbjct: 518 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 577

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           N ELG  A+  +FE++ +N G YVL+SN+YA  G+W  V  +R   RDRG+KK PG+S +
Sbjct: 578 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EV NK+  F  G+  HP+ ++IY  L  L  KMK  GYV     VL DVEE+EK H+L  
Sbjct: 638 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKY 697

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LA+AFGI++ P   PI++ KNLRVC DCHN  K IS+I  R II+RDS+RFHHF  
Sbjct: 698 HSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNG 757

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 758 GQCSCGDYW 766



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 223/474 (47%), Gaps = 49/474 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S Y + G + EA + F +    + +  +     Y     ++  R L + K        
Sbjct: 148 MLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA------- 200

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              +W++     ++  Y +      AR +FD MP RD  SWN MISGY Q+G  +EA  +
Sbjct: 201 ---DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 257

Query: 117 LDEMRLEGVSMDPITVASILP--VCARSDNILSGL----------LIHLYI----VKHGL 160
            +E  +  V      V+  +   +   +  +  G+          +I  Y+    +    
Sbjct: 258 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAR 317

Query: 161 EF-------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           E        N+   N +I  YA+ G +  A   FD+M +RD +SW +IIA Y QS     
Sbjct: 318 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M++ G + +  T  S  S  A++      + VHG +++ G       +GNA++
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALL 436

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY K G I+ A  VFEG+  K+V+SWNT+I GYA++G   EA+ +F+ M++   I P+ 
Sbjct: 437 VMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG-ILPDD 495

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T V +L A SH G + +G +    + ++  +  +    TC++D+ G+ GR+DDA +L  
Sbjct: 496 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 555

Query: 393 QVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +P    +  W A++    IHG    G+KA     +M      PD+     LL+
Sbjct: 556 NMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 604



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 202/436 (46%), Gaps = 42/436 (9%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           Q T T+  +P     P    +     D  K           W++ +     HM  R G  
Sbjct: 22  QTTTTANRKPSTRNQPKTTSSLATDADIVK-----------WNIAITN---HM--RNGQC 65

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + A +LF+ MP R S SWNAMISG   +     A  + ++M     + D ++   ++  C
Sbjct: 66  DSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM----PTRDLVSWNVMISGC 121

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            R  N+ +  L    +     E ++   N +++ YA+ G ++ A  +FD+M  ++ +SWN
Sbjct: 122 VRYRNLRAARL----LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 177

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            ++AAY Q+     A   F    ++    +L++   +     + N   ++R +   +  R
Sbjct: 178 GMLAAYVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 233

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
                D +  N ++  YA+ G +  A  +FE  PV+DV +W  +++GY QNG+  EA  V
Sbjct: 234 -----DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 288

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M E N ++ N     +I+  Y     + Q  ++     +   C +V     ++  Y 
Sbjct: 289 FDGMPEKNSVSWN-----AIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYA 339

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           + G I  A + F ++P+  S+ W AII+ +   G G++AL+ F +M  +G R +  TF S
Sbjct: 340 QNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 399

Query: 440 LLTACSHSGLVSEGQR 455
            L+ C+    +  G++
Sbjct: 400 TLSTCAEIAALELGKQ 415



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 192/444 (43%), Gaps = 61/444 (13%)

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           S+   T A+  P         S L     IVK    +N+ ++N++ N     G    ALR
Sbjct: 20  SLQTTTTANRKPSTRNQPKTTSSLATDADIVK----WNIAITNHMRN-----GQCDSALR 70

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F+ M  R  +SWN++I+    ++    A   F  M       DL++   + S   +  +
Sbjct: 71  LFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMISGCVRYRN 126

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            R +R +   +  R     DV+  NA++  YA+ G +  A  +F+ +P K+ ISWN ++ 
Sbjct: 127 LRAARLLFDQMPER-----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 181

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPN--QGTYV------------------------SI 339
            Y QNG   +A  +F+   +   I+ N   G YV                        ++
Sbjct: 182 AYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTM 241

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           +  Y+  G L +      R+ +     DVF  T +V  Y + G +D+A  +F  +P  +S
Sbjct: 242 ISGYAQNGELLEA----QRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 297

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V WNAII+ +    + D+A   F  M  + V     ++ +++T  + +G +++ + +F  
Sbjct: 298 VSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDR 353

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGACRIHG 516
           M +   I      +  ++  + ++G+   A +    M     R + S + + L  C    
Sbjct: 354 MPQRDSIS-----WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 408

Query: 517 NMELGAVASDRLFEVDSENVGYYV 540
            +ELG     R+ +   E+ G YV
Sbjct: 409 ALELGKQVHGRVVKAGLES-GCYV 431


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/711 (37%), Positives = 420/711 (59%), Gaps = 15/711 (2%)

Query: 6    VRCGRLSEAVDCFYQFTLTSGLRPDFY-----TFPPVLKACRNLVDGKKIHCSVLKLGF- 59
            VR  R  EAV+ F +   +  L P+ Y      FP           G ++H  +++ G  
Sbjct: 361  VRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLL 420

Query: 60   EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
               + +   L++MY + G  N A  +F  M  +DS +WN+MI+G  Q+   +EA+    E
Sbjct: 421  NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQE 480

Query: 120  MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            MR   +     T+ S L  CA    I  G  +H   +K GL+ ++ VSN L+ +Y + G 
Sbjct: 481  MRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGY 540

Query: 180  MRHALRVFDQMMERDVVSWNSIIAAYEQSNDP-ITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            ++   + F  M++ D VSWNS+I A   S    + A   F  M +AG  P+ +T +++ +
Sbjct: 541  VKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILA 600

Query: 239  IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDV 297
             V+ L+     + +H  +++R     D  I NA++  Y K G +     +F  +   +D 
Sbjct: 601  AVSSLSLHELGKQIHALVLKRN-VAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDE 659

Query: 298  ISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +SWN++I+GY  N L  +A++ V+ MM++   ++    T+ ++L A + V  L +G+++H
Sbjct: 660  VSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLD--GFTFATVLSACATVATLERGMEVH 717

Query: 357  ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
               ++ CL  D+ + + LVDMY KCGRID A   F  +P  +   WN++IS +  HG G 
Sbjct: 718  GCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGT 777

Query: 417  KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            K+L+ F QM  +G  PDH+TFV +L+ACSH+GLV+EG  +F  M E +G+ P ++H+ CM
Sbjct: 778  KSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCM 837

Query: 477  VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NMELGAVASDRLFEVDSE 534
            VDL GR G L    +F+  MPV+P+  IW  +LGA CR +G N  LG  A++ L E++  
Sbjct: 838  VDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPT 897

Query: 535  NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
            N   Y+L+SN+YA+ GKW+ V + R   R   +KK  G S + + + V +F  G+++HP+
Sbjct: 898  NAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPE 957

Query: 595  YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
             + IY++L+ L  KM+  GY+P+  F L D+E + KE +L+ HSE++A+AF +++ P K 
Sbjct: 958  KDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKM 1016

Query: 655  PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            PI+I KNLRVCGDCH+  K+ISQI ER+I++RDSNRFHHF++G CSCGD+W
Sbjct: 1017 PIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/530 (29%), Positives = 262/530 (49%), Gaps = 29/530 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN-----LVDGKKIHCSVL 55
           +IS Y R    +EA + F +  ++ G  P+ Y F  V++AC+      L  G +IH  + 
Sbjct: 145 LISGYTRNRMPNEACELFRKM-VSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMS 203

Query: 56  KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           K  +  DV  +  L+ MY    G+ + AR+ FD +  R+  S N+MIS YCQ G+AV A 
Sbjct: 204 KTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAF 263

Query: 115 DILDEMRLE----GVSMDPITVASIL-PVCARSDN---ILSGLLIHLYIVKHGLEFNLFV 166
           DI   M+ E    G+  +  T  S++   C+ +++   +L  LL    + K G   +L+V
Sbjct: 264 DIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTR--VEKSGFLHDLYV 321

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-G 225
            + L++ +AK G + +A  +F +M  R+VVS N +I    +      A   F  M+ +  
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVE 381

Query: 226 IQPD--LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           + P+  ++ L +        N  R    VH F++R G     + IGN +++MYAK G IN
Sbjct: 382 LNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIN 441

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            AC VF  +  KD ++WN++ITG  QN    EA++ FQ M    E+ P+  T +S L + 
Sbjct: 442 DACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRR-TELYPSNFTMISALSSC 500

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + +G +  G ++H   +K  L  DV V+  L+ +YG+CG + +    F  +     V WN
Sbjct: 501 ASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWN 560

Query: 404 AIISCHGIHGQGD----KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           ++I   G     +    +A+  F  M+  G  P+ +TF+++L A S   L   G++  H 
Sbjct: 561 SLI---GALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ-IHA 616

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +  +  +         ++  +G+ G +G   N    M  R D   W +++
Sbjct: 617 LVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMI 666



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/486 (29%), Positives = 254/486 (52%), Gaps = 31/486 (6%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           D +++H  + K GF  D+F+  +L+++Y R G     RK+FD+MP+R+  SW+ +ISGY 
Sbjct: 91  DAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN--ILSGLLIHLYIVKHGLEFN 163
           ++    EA ++  +M  +G   +     S++  C       +  G+ IH  + K     +
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND 210

Query: 164 LFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +  SN LI+MY    GM+ +A R FD +  R++VS NS+I+ Y Q  D ++A   F+TMQ
Sbjct: 211 VTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQ 270

Query: 223 QA----GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM--------RRGWFMEDVIIGN 270
           +     G++P+  T  SL S    L +        G ++         +  F+ D+ +G+
Sbjct: 271 KEVMGDGLKPNEYTFGSLISATCSLANS-------GLVLLEQLLTRVEKSGFLHDLYVGS 323

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+V  +AK G I  A  +F+ +  ++V+S N LI G  +     EA+E+F  M++  E+N
Sbjct: 324 ALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELN 383

Query: 331 PNQGTYVSILPAYSHVGAL----RQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRID 385
           PN  +Y+ IL A+     L    R+G ++HA +I++ L    + +   L++MY KCG I+
Sbjct: 384 PN--SYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIN 441

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           DA  +F  +    SV WN++I+    + Q  +A+  F++M    + P + T +S L++C+
Sbjct: 442 DACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCA 501

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
             G +S G++  H    + G+   +     ++ L+G  G++         M +  D   W
Sbjct: 502 SLGWISVGEQ-LHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSW 559

Query: 506 GALLGA 511
            +L+GA
Sbjct: 560 NSLIGA 565



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 14/139 (10%)

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+   Y +    +   ++H ++ KN    D+F+   L+++Y + G +     +F ++P  
Sbjct: 78  SLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLR 137

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           + V W+ +IS +  +   ++A   FR+M+ +G  P+H  F S++ AC   G         
Sbjct: 138 NLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECG--------- 188

Query: 458 HMMQEEFGIKPHLKHYGCM 476
                E+G+K  ++ +G M
Sbjct: 189 -----EYGLKFGMQIHGLM 202


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/706 (38%), Positives = 402/706 (56%), Gaps = 40/706 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVR 92
           +L  C+ L   + IH  ++K+G     +  + L+  +C     F     A  +F  +   
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIE-FCILSPHFEGLPYAISVFKTIQEP 97

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +   WN M  G+  S + V AL +   M   G+  +  T   +L  CA+S     G  IH
Sbjct: 98  NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIH 157

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS--------------- 197
            +++K G + +L+V  +LI+MY + G +  A +VFD+   RDVVS               
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217

Query: 198 ----------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
                           WN++I+ Y ++ +   A   F  M +  ++PD  T+V++ S  A
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           Q       R VH +I   G F  ++ I NA++D+Y+K G + +AC +FE LP KDVISWN
Sbjct: 278 QSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWN 336

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           TLI GY    L  EA+ +FQ M    E  PN  T +SILPA +H+GA+  G  IH  + K
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395

Query: 362 NC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
               +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ D + 
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M   G++PD ITFV LL+ACSHSG++  G+  F  M +++ + P L+HYGCM+DL
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            G +G    A   I  M + PD  IW +LL AC++HGN+ELG   ++ L +++ EN G Y
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSY 575

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA+ G+W  V + R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY
Sbjct: 576 VLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 635

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I 
Sbjct: 636 GMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 695

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC +CH  TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 696 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 211/401 (52%), Gaps = 37/401 (9%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP VLK+C   +   +G++IH  VLKLG + D++V  SL+ MY 
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G    A+KLFD++PV+D  SWNAMISG
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++GN  EAL++  +M    V  D  T+ +++  CA+S +I  G  +HL+I  HG   N
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN 300

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  +F+++  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    A L      R +H +I +R   + +   +  +++DMYAK G I
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF  +  K + SWN +I G+A +G A  + ++F  M +   I P+  T+V +L A
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLSA 479

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCG 382
            SH G L  G  I   + ++  +   +    C++D+ G  G
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG 520


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/615 (41%), Positives = 369/615 (60%), Gaps = 24/615 (3%)

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           AL+    MR   + +D   + S+L  C++      G  IH + VK+GL  ++FV N L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSII----------------------AAYEQSND 210
           MY++ G +  A  +FD+M ERDVVSW+++I                      A Y + ND
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
                  F  M +  + P+ +T++SL      +   +  + +H +I+R G+ M  + +  
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM-SLALAT 271

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+VDMY K G I SA A+F+ +  KDV++W  +I+ YAQ      A ++F  M + N + 
Sbjct: 272 ALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRD-NGVR 330

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN+ T VS+L   +  GAL  G   HA + K  +  DV + T L+DMY KCG I  A  L
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F +        WN +++ +G+HG G+KAL  F +M   GV+P+ ITF+  L ACSH+GLV
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG+  F  M  +FG+ P ++HYGCMVDL GRAG L  A+  I++MPV P+ +IWGA+L 
Sbjct: 451 VEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLA 510

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           AC+IH N  +G +A+  L  ++ +N GY VLMSNIYA   +W  V  +R   +D G+KK 
Sbjct: 511 ACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKE 570

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG SSIEVN  V  F  G+  HP  EKI + L  ++ K+K  GY+PD S VL +++E+EK
Sbjct: 571 PGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEK 630

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E  L  HSE+LA+AFG+IS+ P +PI++ KNLR+C DCH  TK +S+I +R IIVRD NR
Sbjct: 631 ETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNR 690

Query: 691 FHHFKDGICSCGDYW 705
           FHHF++G CSCG YW
Sbjct: 691 FHHFREGSCSCGGYW 705



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 227/451 (50%), Gaps = 31/451 (6%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y +     +  D +  P VLKAC  +     GK+IH   +K G   DVFV  +L+ MY  
Sbjct: 97  YTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSE 156

Query: 76  FGLANVARKLFDDMPVRDSGSWN----------------------AMISGYCQSGNAVEA 113
            G    AR LFD M  RD  SW+                      AMI+GY +  +  E 
Sbjct: 157 CGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEG 216

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
             +   M  E V  + IT+ S++  C     +  G  +H YI+++G   +L ++  L++M
Sbjct: 217 ERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDM 276

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +R A  +FD M  +DV++W ++I+AY Q+N    A   F  M+  G++P+ LT+
Sbjct: 277 YGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTM 336

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           VSL S+ A        +  H +I ++G  + DVI+  A++DMYAK G I+ A  +F    
Sbjct: 337 VSLLSLCAVNGALDMGKWFHAYIDKQGVEV-DVILKTALIDMYAKCGDISGAQRLFSEAI 395

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            +D+ +WN ++ GY  +G   +A+++F  ME    + PN  T++  L A SH G + +G 
Sbjct: 396 DRDICTWNVMMAGYGMHGYGEKALKLFTEMETLG-VKPNDITFIGALHACSHAGLVVEGK 454

Query: 354 KIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
            +  ++I +  L   V    C+VD+ G+ G +D+A  +   +P + ++  W A+++   I
Sbjct: 455 GLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKI 514

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           H   +      R++L   + P +  +  L++
Sbjct: 515 HKNSNMGELAARELL--ALEPQNCGYKVLMS 543



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 5/310 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI+ Y+RC  L E    F +  +   + P+  T   ++ +C     +  GK++H  +L+ 
Sbjct: 203 MIAGYIRCNDLEEGERLFVRM-IEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN 261

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   + +A +L+ MY + G    AR +FD M  +D  +W AMIS Y Q+     A  + 
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR  GV  + +T+ S+L +CA +  +  G   H YI K G+E ++ +   LI+MYAK 
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKC 381

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+F + ++RD+ +WN ++A Y        A   FT M+  G++P+ +T +   
Sbjct: 382 GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGAL 441

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              +        + +   ++     +  V     +VD+  + G+++ A  + E +PV   
Sbjct: 442 HACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 298 IS-WNTLITG 306
           I+ W  ++  
Sbjct: 502 IAIWGAMLAA 511


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/708 (37%), Positives = 408/708 (57%), Gaps = 35/708 (4%)

Query: 32  YTFPPVLKACRNLVD----GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARKL 85
           +T   VL AC +L +    G++ H   LK GF    + F   +LL MY R GL + A+ L
Sbjct: 163 FTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQML 222

Query: 86  FDDMPVRDSG-----SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           F  +   DS      +WN M+S   QSG   EA++++ +M   GV  D IT AS LP C+
Sbjct: 223 FGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACS 282

Query: 141 RSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERDVVS 197
           + + +  G  +H Y++K   L  N FV++ L++MYA    +  A RVFD +    R +  
Sbjct: 283 QLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGL 342

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           WN+++  Y Q+     A   F  M+ +AG+ P   T+  +    A+        +VHG++
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++RG   ++  + NA++D+YA+LG + +A  +F  +  +DV+SWNTLITG    G   +A
Sbjct: 403 LKRG-MADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDA 461

Query: 317 IEVFQMMEECNEIN-----------------PNQGTYVSILPAYSHVGALRQGIKIHARV 359
            ++ + M++                      PN  T +++LP  + + A  +G +IH   
Sbjct: 462 FQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYA 521

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +++ L  D+ V + LVDMY KCG +  + ++F ++P+ + + WN +I  +G+HG GD+A+
Sbjct: 522 MRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAI 581

Query: 420 NFF-RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
             F R ++    +P+ +TF++ L ACSHSG+V  G   FH M+   G++P    + C VD
Sbjct: 582 ALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVD 641

Query: 479 LFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           + GRAG L  A++ I +M P     S W + LGACR+H N+ LG +A++RLF+++ +   
Sbjct: 642 ILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEAS 701

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           +YVL+ NIY+  G WE   EVR+  R RG+ K PG S IE++  +  F  G   HP+   
Sbjct: 702 HYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTL 761

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           ++  +  L  +M++ GY PD S VL D+EE EK  IL  HSE+LAIAFG++ +PP + I+
Sbjct: 762 VHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIR 821

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCH   KFIS++  REI++RD  RFHHF DG CSCGDYW
Sbjct: 822 VAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 302/621 (48%), Gaps = 71/621 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK- 56
           M+S+ V+ GR  EA++  Y   +  G+RPD  TF   L AC     L  G+++H  VLK 
Sbjct: 242 MVSLLVQSGRCGEAIEVIYDM-VARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKD 300

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEAL 114
                + FVA++L+ MY       VAR++FD +P   R  G WNAM+ GY Q+G   EAL
Sbjct: 301 SDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEAL 360

Query: 115 DILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           ++   M  E GV     T+A +LP CARS+       +H Y++K G+  N FV N L+++
Sbjct: 361 ELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDL 420

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-------- 225
           YA+ G M  A  +F  +  RDVVSWN++I           A      MQQ G        
Sbjct: 421 YARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTE 480

Query: 226 ----------IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
                     + P+ +TL++L    A L      + +HG+ MR      D+ +G+A+VDM
Sbjct: 481 DGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHA-LDSDIAVGSALVDM 539

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAK G +  + AVF+ LP ++VI+WN LI  Y  +GL  EAI +F  M   NE  PN+ T
Sbjct: 540 YAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVT 599

Query: 336 YVSILPAYSHVGALRQGIKI-HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +++ L A SH G + +G+++ H+    + +     +  C VD+ G+ GR+D+A S+   +
Sbjct: 600 FIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSM 659

Query: 395 -PRSSSV-PWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHIT-FVSLLTACSHSG 448
            P    V  W++ +    +H     G+ A     Q+      PD  + +V L    S +G
Sbjct: 660 EPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQL-----EPDEASHYVLLCNIYSAAG 714

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           L  +     + M++  G+    K  GC  ++L       G+ H F+      P++++   
Sbjct: 715 LWEKSSEVRNRMRQR-GVS---KEPGCSWIELD------GVIHRFMAGESAHPESTL--- 761

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR----SLAR 563
                 +H +M       D L+E    N GY    S++  ++ + E    +R     LA 
Sbjct: 762 ------VHAHM-------DALWE-RMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAI 807

Query: 564 DRGLKKTPGWSSIEVNNKVDI 584
             GL +TP  ++I V   + +
Sbjct: 808 AFGLLRTPPGATIRVAKNLRV 828



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 154/605 (25%), Positives = 272/605 (44%), Gaps = 42/605 (6%)

Query: 30  DFYTFPPVLK---ACRNLVDGKKIHCSVLK--LGFEWDVFVAASLLHMYCRFGLANVARK 84
           D +  PP  K   A R+L+  + IH + L+  L   +   VA +LL  Y R G    A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR-SD 143
           LF+ MP RD+ ++N++I+  C     + ALD L +M LEG  +   T+ S+L  C+  ++
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 144 NILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD-----VV 196
           ++  G   H + +K+G       F  N L++MYA+ G++  A  +F  +   D     VV
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +WN++++   QS     A      M   G++PD +T  S     +QL      R +H ++
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLAS 314
           ++      +  + +A+VDMYA    +  A  VF+ +P   + +  WN ++ GYAQ G+  
Sbjct: 298 LKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDE 357

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+E+F  ME    + P++ T   +LPA +          +H  V+K  +  + FV   L
Sbjct: 358 EALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNAL 417

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG----- 429
           +D+Y + G ++ A  +F  +     V WN +I+   + G    A    R+M  +G     
Sbjct: 418 MDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDA 477

Query: 430 -------------VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
                        V P+++T ++LL  C+     ++G+   H       +   +     +
Sbjct: 478 TTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKE-IHGYAMRHALDSDIAVGSAL 536

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF---EVDS 533
           VD++ + G L ++      +P R +   W  L+ A  +HG  +      DR+    E   
Sbjct: 537 VDMYAKCGCLALSRAVFDRLPKR-NVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKP 595

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
             V +   ++    +     G++   S+ R+ G++ TP   +      VDI     R   
Sbjct: 596 NEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHAC----AVDILGRAGRLDE 651

Query: 594 KYEKI 598
            Y  I
Sbjct: 652 AYSII 656


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/654 (39%), Positives = 378/654 (57%), Gaps = 35/654 (5%)

Query: 86  FDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +D P  +  S  WN +I+ Y +      AL++  ++R     +D     S+L  C +  
Sbjct: 79  LNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVS 138

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
               G  IH +++K GL+ ++FV N L+ MY +   + +A  VFD+MMERDVVSW+++I 
Sbjct: 139 WTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIR 198

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           +  ++ +   A      M    ++P  + +VS+ ++ A   + R  +++H +++R     
Sbjct: 199 SLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNE 258

Query: 264 E-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG---------------- 306
              V    A++DMYAK G +  A  +F GL  K V+SW  +I G                
Sbjct: 259 HMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDS 318

Query: 307 ---------------YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
                          YAQ     +A  +F  M     + P + T VS+L   +  GAL  
Sbjct: 319 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG-VRPTKVTIVSLLSLCAVAGALDL 377

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G  +H+ + K  +  D  + T LVDMY KCG I+ A  LF +        WNAII+   +
Sbjct: 378 GKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 437

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG G++AL+ F +M  +GV+P+ ITF+ LL ACSH+GLV+EG++ F  M   FG+ P ++
Sbjct: 438 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 497

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGCMVDL GRAG L  AH  I++MP++P+  +WGAL+ ACR+H N +LG +A+ +L E+
Sbjct: 498 HYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 557

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           + EN GY VLMSNIYA   +W     VR   +  G+KK PG S IEVN  V  F  G+++
Sbjct: 558 EPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQS 617

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+  +I + L  +  K+   GYVPD S VL +++E+EKE  LT HSE+LA+AFG+IS+ 
Sbjct: 618 HPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTA 677

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P +PI+I KNLRVC DCH  TK +S+I  R IIVRD NRFHHF++G CSCGDYW
Sbjct: 678 PSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 155/579 (26%), Positives = 269/579 (46%), Gaps = 64/579 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I+ Y +  +   A++ + Q         D +  P VLKAC  +     GK+IH  VLK 
Sbjct: 95  VITSYTKRNQPRNALNVYAQLR-KMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKK 153

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DVFV  +L+ MY        AR +FD M  RD  SW+ MI    ++     AL+++
Sbjct: 154 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELI 213

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV--SNNLINMYA 175
            EM    V    + + S++ + A + N+  G  +H Y++++    ++ V  +  L++MYA
Sbjct: 214 REMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYA 273

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIA-------------------------------A 204
           K G +  A ++F+ + ++ VVSW ++IA                               A
Sbjct: 274 KCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSA 333

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y Q+N    A   F  M+ +G++P  +T+VSL S+ A        + VH +I +    + 
Sbjct: 334 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEV- 392

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D I+  A+VDMYAK G IN+A  +F     +D+  WN +ITG+A +G   EA+++F  ME
Sbjct: 393 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 452

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGR 383
               + PN  T++ +L A SH G + +G K+  +++    L   +    C+VD+ G+ G 
Sbjct: 453 R-QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 511

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           +D+A  +   +P + +++ W A+++   +H           Q+L+  + P++  +  L+ 
Sbjct: 512 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE--IEPENCGYNVLM- 568

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL-----GMAHNFIQNMP 497
               S + +   R+     +  G++  +K  G    +    GH      G  H F+    
Sbjct: 569 ----SNIYAAANRW----SDAAGVRKTMKTVG----MKKEPGHSVIEVNGTVHEFLMGDQ 616

Query: 498 VRPDASIWGALLGACRIHGNMELGAV--ASDRLFEVDSE 534
             P       +L   R   N E G V   S  L  +D E
Sbjct: 617 SHPQIRRINEMLAEMRRKLN-EAGYVPDTSTVLLNIDEE 654


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/666 (38%), Positives = 386/666 (57%), Gaps = 34/666 (5%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           +Y    L + + +LF+ +    + +W ++I  Y   G   ++L     M   G+  D   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------ 185
             S+L  CA   ++  G  +H YI++ GL+F+L+  N L+NMY+K   +  + R      
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 186 -VFDQMMER-------------------------DVVSWNSIIAAYEQSNDPITAHGFFT 219
            VFD+M ER                         D+VSWN+IIA   ++           
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            M  A ++PD  TL S+  ++A+  D    + +HG  +R+G    D+ + ++++DMYAK 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG-LDADIYVASSLIDMYAKC 287

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
             +  +C VF  L  +D ISWN++I G  QNGL  E +  F+ M    +I P   ++ SI
Sbjct: 288 TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMA-KIKPKSYSFSSI 346

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           +PA +H+  L  G ++H  + +N    ++F+A+ LVDMY KCG I  A  +F ++     
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W A+I    +HGQ   A+  F QM  EG++P+H+ F+++LTACSH GLV E  +YF+ 
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNS 466

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M  +FGI P ++HY  + DL GRAG L  A++FI  M + P  SIW  LL ACR+H N++
Sbjct: 467 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNID 526

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +    ++R+ EVD  N G Y+L++NIY+   +W+   + R+  R  G++KTP  S IEV 
Sbjct: 527 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 586

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
           NKV  F  G+ +HP YEKI + +  L   M+  GYVPD S V  DVEE++K++++ SHSE
Sbjct: 587 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSE 646

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           RLAI FGII++P    I++ KNLRVC DCH  TKFIS+I  REI+VRD++RFHHFK+G C
Sbjct: 647 RLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTC 706

Query: 700 SCGDYW 705
           SCGDYW
Sbjct: 707 SCGDYW 712



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 231/448 (51%), Gaps = 51/448 (11%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC----- 74
           L SGL PD   FP VLK+C  L+D   G+ +H  ++++G ++D++   +L++MY      
Sbjct: 98  LASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL 157

Query: 75  ------RFGLANV---------------------ARKLFDDMPVRDSGSWNAMISGYCQS 107
                 R G   V                      RK+F+ MP +D  SWN +I+G  ++
Sbjct: 158 EESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARN 217

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
           G   E L ++ EM    +  D  T++S+LP+ A + +I  G  IH   ++ GL+ +++V+
Sbjct: 218 GLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVA 277

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           ++LI+MYAK   +  + RVF  + ERD +SWNSIIA   Q+        FF  M  A I+
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIK 337

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           P   +  S+    A L      + +HG+I R G F E++ I +++VDMYAK G I +A  
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG-FDENIFIASSLVDMYAKCGNIRTAKQ 396

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ + ++D++SW  +I G A +G A +AIE+F+ M E   I PN   ++++L A SH G
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM-ETEGIKPNHVAFMAVLTACSHGG 455

Query: 348 ALRQGIKIHARVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAMSLF--YQVPRSSS 399
            + +  K       N +  D  +A        + D+ G+ GR+++A        +  + S
Sbjct: 456 LVDEAWKYF-----NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS 510

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + W  ++S   +H   D A     ++L+
Sbjct: 511 I-WATLLSACRVHXNIDMAEKVANRILE 537



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 171/352 (48%), Gaps = 36/352 (10%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           + L+PD +T   VL      VD   GK+IH   ++ G + D++VA+SL+ MY +      
Sbjct: 233 ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           + ++F  +  RD  SWN++I+G  Q+G   E L    +M +  +     + +SI+P CA 
Sbjct: 293 SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAH 352

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G  +H YI ++G + N+F++++L++MYAK G +R A ++FD+M  RD+VSW ++
Sbjct: 353 LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAM 412

Query: 202 I---AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           I   A + Q+ D I     F  M+  GI+P+ +      + +A L  C      HG ++ 
Sbjct: 413 IMGCALHGQAPDAIE---LFEQMETEGIKPNHV------AFMAVLTACS-----HGGLVD 458

Query: 259 RGW-----FMEDVIIG------NAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG 306
             W        D  I        AV D+  + G +  A     G+ +    S W TL++ 
Sbjct: 459 EAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSA 518

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHA 357
              +     A +V   +    E++PN  G Y+ +   YS     ++  K  A
Sbjct: 519 CRVHXNIDMAEKVANRIL---EVDPNNTGAYILLANIYSAARRWKEAAKWRA 567



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 83/143 (58%), Gaps = 4/143 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+  V+ G   E +  F Q  L + ++P  Y+F  ++ AC +L     GK++H  + + 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 369

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++F+A+SL+ MY + G    A+++FD M +RD  SW AMI G    G A +A+++ 
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELF 429

Query: 118 DEMRLEGVSMDPITVASILPVCA 140
           ++M  EG+  + +   ++L  C+
Sbjct: 430 EQMETEGIKPNHVAFMAVLTACS 452


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/706 (38%), Positives = 398/706 (56%), Gaps = 40/706 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVR 92
           +L  C+ L   + IH  ++K G     +  + L+  +C     F     A  +F+ +   
Sbjct: 8   LLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEP 66

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +   WN M  G+  S + V AL +   M   G+  +  T   +L  CA+S     G  IH
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIH 126

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS--------------- 197
            +++K G + +L+V  +LI+MY + G +  A +VFDQ   RDVVS               
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 186

Query: 198 ----------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
                           WN++I+ Y ++ +   A   F  M +  ++PD  T+VS+ S  A
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 246

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           Q       R VH +I   G F  ++ I NA++D+Y K G + +AC +FEGL  KDVISWN
Sbjct: 247 QSASIELGRQVHSWIDDHG-FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           TLI GY    L  EA+ +FQ M    E +PN  T +SILPA +H+GA+  G  IH  + K
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYINK 364

Query: 362 NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
                    +  T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A 
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAF 424

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M    + PD ITFV LL+ACSHSG++  G+  F  M+E++ I P L+HYGCM+DL
Sbjct: 425 DIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 484

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            G +G    A   I  M + PD  IW +LL AC+++ N+ELG   +  L +++ +N G Y
Sbjct: 485 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSY 544

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA  G+W  V ++R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY
Sbjct: 545 VLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I 
Sbjct: 605 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC +CH  TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/644 (39%), Positives = 381/644 (59%), Gaps = 28/644 (4%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P R + SW   +    +S +  EA+    EM + G   D     ++L   +   ++ +G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 150 LIHLYIVKHG---------------------LEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            IH   VK G                     +    F +N L+ MYAK G +  +  +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
             ++RD+VSWN++I+++ QS+    A  FF  M   G++ D +T+ S+    + L     
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H +++R    +E+  +G+A+VDMY     + S   VF+ +  + +  WN +I+GYA
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH-VGALRQGIKIHARVIKNCLCFD 367
           +NGL  +A+ +F  M +   + PN  T  S++PA  H + A+ +G +IHA  I+N L  D
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASD 352

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + V + LVDMY KCG ++ +  +F ++P  + + WN +I   G+HG+G++AL  F+ M+ 
Sbjct: 353 ITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 428 EGVR-----PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
           E  R     P+ +TF+++  ACSHSGL+SEG   F+ M+ + G++P   HY C+VDL GR
Sbjct: 413 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGR 472

Query: 483 AGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           AG L  A+  +  MP   D    W +LLGACRIH N+ELG VA+  L  ++     +YVL
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVL 532

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIY++ G W    EVR   R  G+KK PG S IE  ++V  F  G+ +HP+ E+++  
Sbjct: 533 LSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGF 592

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L+ KM+  GYVPD S VL +V+EDEKE++L  HSE+LAIAFGI+++PP + I++ KN
Sbjct: 593 LETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKN 652

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVC DCH  TKFIS+I EREIIVRD  RFHHFK+G CSCGDYW
Sbjct: 653 LRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 225/443 (50%), Gaps = 40/443 (9%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
            R     EA+  + + T+ SG RPD + FP VLKA   L D   G++IH + +K G+   
Sbjct: 68  TRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSS 126

Query: 63  ---------------------VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
                                 F   +L+ MY + G  + ++ LF+    RD  SWN MI
Sbjct: 127 SVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMI 186

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-L 160
           S + QS    EAL     M LEGV +D +T+AS+LP C+  + +  G  IH Y++++  L
Sbjct: 187 SSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDL 246

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN-DPITAHGFFT 219
             N FV + L++MY     +    RVFD ++ R +  WN++I+ Y ++  D      F  
Sbjct: 247 IENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIE 306

Query: 220 TMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
            ++ AG+ P+  T+ S + + V  L      + +H + + R     D+ +G+A+VDMYAK
Sbjct: 307 MIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAI-RNMLASDITVGSALVDMYAK 365

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEEC---NEINPNQG 334
            G +N +  VF  +P K+VI+WN LI     +G   EA+E+F+ M+ E     E  PN+ 
Sbjct: 366 CGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEV 425

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           T++++  A SH G + +G+ +  R+  +       D +   C+VD+ G+ G++++A  L 
Sbjct: 426 TFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA--CVVDLLGRAGQLEEAYELV 483

Query: 392 YQVPRS--SSVPWNAIISCHGIH 412
             +P        W++++    IH
Sbjct: 484 NTMPAEFDKVGAWSSLLGACRIH 506



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 12/216 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           MIS Y R G   +A+  F +    +GL P+  T   V+ AC +    +  GK+IH   ++
Sbjct: 287 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIR 346

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
                D+ V ++L+ MY + G  N++R++F++MP ++  +WN +I      G   EAL++
Sbjct: 347 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 406

Query: 117 LDEMRLE---GVSMDP--ITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNL 170
              M  E   G    P  +T  ++   C+ S  I  GL L +     HG+E        +
Sbjct: 407 FKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACV 466

Query: 171 INMYAKFGMMRHALRVFDQM-MERDVV-SWNSIIAA 204
           +++  + G +  A  + + M  E D V +W+S++ A
Sbjct: 467 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 502


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/701 (36%), Positives = 407/701 (58%), Gaps = 9/701 (1%)

Query: 5    YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEW 61
            Y +     E++  F Q     G+ PD +    +LK    L    DG   H  ++KLGF  
Sbjct: 385  YAKAAEFEESLLLFEQMH-ELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGT 443

Query: 62   DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
               V  +L+  Y +  + + A  +FD MP +D+ SWN++ISG   +G   EA+++   M 
Sbjct: 444  QCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMW 503

Query: 122  LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            ++G  +D  T+ S+LP CARS     G ++H Y VK GL     ++N L++MY+      
Sbjct: 504  MQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWH 563

Query: 182  HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
               ++F  M +++VVSW ++I +Y ++       G    M   GI+PD+  + S+    A
Sbjct: 564  STNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA 623

Query: 242  QLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
                 +  +SVHG+ +R G  ME ++ + NA+++MY     +  A  VF+ +  KD+ISW
Sbjct: 624  GDESLKQGKSVHGYAIRNG--MEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISW 681

Query: 301  NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            NTLI GY++N  A+E+  +F  M    +  PN  T   ILPA + + +L +G +IHA  +
Sbjct: 682  NTLIGGYSRNNFANESFSLFSDM--LLQFKPNTVTMTCILPAVASISSLERGREIHAYAL 739

Query: 361  KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            +     D + +  LVDMY KCG +  A  LF ++ + + + W  +I+ +G+HG G  A+ 
Sbjct: 740  RRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVA 799

Query: 421  FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             F QM   GV PD  +F ++L AC HSGL +EG ++F+ M++E+ I+P LKHY C+VDL 
Sbjct: 800  LFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLL 859

Query: 481  GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
               G+L  A  FI++MP+ PD+SIW +LL  CRIH +++L    +DR+F+++ EN GYYV
Sbjct: 860  SHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYV 919

Query: 541  LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            L++NIYA   +WE V ++++    RGL++  G S IEV  KV +F   NR HP++ +I +
Sbjct: 920  LLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAE 979

Query: 601  ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
             L ++  +M+  G+ P K + L    +   +  L  HS +LA+ FG++  P   PI++ K
Sbjct: 980  FLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTK 1039

Query: 661  NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
            N +VC  CH   KFIS++  REII+RDS+RFHHF+ G CSC
Sbjct: 1040 NSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 169/582 (29%), Positives = 282/582 (48%), Gaps = 22/582 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S Y + G   E V  F Q     G+ PD +    VLK   +L    +G+ IH  + KL
Sbjct: 169 LMSAYAKAGDFQEGVSLFRQMQ-CCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKL 227

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G      VA +L+ +Y R G    A ++FD M  RD+ SWN+ ISGY  +G    A+D+ 
Sbjct: 228 GLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLF 287

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL---------FVSN 168
            +M  EG  +  +TV S+LP CA     L G ++H Y +K GL ++L          + +
Sbjct: 288 SKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGS 347

Query: 169 NLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            L+ MY K G M  A RVFD M  + +V  WN I+  Y ++ +   +   F  M + GI 
Sbjct: 348 KLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGIT 407

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD   L  L   +  L+  R+    HG++++ G F     + NA++  YAK  +I++A  
Sbjct: 408 PDEHALSCLLKCITCLSCARDGLVAHGYLVKLG-FGTQCAVCNALISFYAKSNMIDNAVL 466

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHV 346
           VF+ +P +D ISWN++I+G   NGL SEAIE+F +M  + +E++    T +S+LPA +  
Sbjct: 467 VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDST--TLLSVLPACARS 524

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
                G  +H   +K  L  +  +A  L+DMY  C        +F  + + + V W A+I
Sbjct: 525 HYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMI 584

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           + +   G  DK     ++M+ +G++PD     S+L   +    + +G +  H      G+
Sbjct: 585 TSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQG-KSVHGYAIRNGM 643

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHGNMELGAVAS 525
           +  L     +++++    ++  A   + +     D   W  L+G   R +   E  ++ S
Sbjct: 644 EKLLPVANALMEMYVNCRNMEEA-RLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFS 702

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           D L +     V    ++  + A++   E   E+ + A  RG 
Sbjct: 703 DMLLQFKPNTVTMTCILPAV-ASISSLERGREIHAYALRRGF 743



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 235/497 (47%), Gaps = 39/497 (7%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV---------------------ARKL 85
           G + +C+V++L  E     AA   H   R G   +                     AR +
Sbjct: 93  GVRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMV 152

Query: 86  FDDMPVR--DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           FD+MP R  D   W +++S Y ++G+  E + +  +M+  GVS D   V+ +L   A   
Sbjct: 153 FDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLG 212

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +I  G +IH  + K GL     V+N LI +Y++ G M  A++VFD M  RD +SWNS I+
Sbjct: 213 SITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTIS 272

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--W 261
            Y  +     A   F+ M   G +   +T++S+    A+L      + VHG+ M+ G  W
Sbjct: 273 GYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLW 332

Query: 262 FMEDV------IIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLAS 314
            +E V       +G+ +V MY K G + SA  VF+ +P K +V  WN ++ GYA+     
Sbjct: 333 DLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFE 392

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC- 373
           E++ +F+ M E   I P++     +L   + +   R G+  H  ++K  L F    A C 
Sbjct: 393 ESLLLFEQMHELG-ITPDEHALSCLLKCITCLSCARDGLVAHGYLVK--LGFGTQCAVCN 449

Query: 374 -LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+  Y K   ID+A+ +F ++P   ++ WN++IS    +G   +A+  F +M  +G   
Sbjct: 450 ALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  T +S+L AC+ S     G R  H    + G+         ++D++         +  
Sbjct: 510 DSTTLLSVLPACARSHYWFVG-RVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 493 IQNMPVRPDASIWGALL 509
            +NM  +   S W A++
Sbjct: 569 FRNMAQKNVVS-WTAMI 584



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 33/438 (7%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI-V 156
           N  I   CQ+G+   AL +L      GV     +  +++ +C    ++ +    H  +  
Sbjct: 67  NLRIQRLCQAGDLAAALRLLGSDGGVGVR----SYCAVVQLCGEERSLEAARRAHALVRA 122

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQSNDPITA 214
             G      +   L+  Y K G +  A  VFD+M  R  DV  W S+++AY ++ D    
Sbjct: 123 GTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEG 182

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  MQ  G+ PD   +  +   +A L        +HG + + G   E   + NA++ 
Sbjct: 183 VSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLG-LGEACAVANALIA 241

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQ 333
           +Y++ G +  A  VF+ +  +D ISWN+ I+GY  NG    A+++F +M  E  EI+   
Sbjct: 242 LYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSV- 300

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV---------FVATCLVDMYGKCGRI 384
            T +S+LPA + +G    G  +H   +K+ L +D+          + + LV MY KCG +
Sbjct: 301 -TVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDM 359

Query: 385 DDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT- 442
             A  +F  +P   +V  WN I+  +    + +++L  F QM + G+ PD      LL  
Sbjct: 360 GSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKC 419

Query: 443 ----ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
               +C+  GLV+ G    ++++  FG +  + +   ++  + ++  +  A      MP 
Sbjct: 420 ITCLSCARDGLVAHG----YLVKLGFGTQCAVCN--ALISFYAKSNMIDNAVLVFDRMP- 472

Query: 499 RPDASIWGALLGACRIHG 516
             D   W +++  C  +G
Sbjct: 473 HQDTISWNSVISGCTSNG 490


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 416/709 (58%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y   G   EA++ +++    S + PD +T   VL A  NL+    G+ +H   LK 
Sbjct: 178 LISGYSSHGYYEEALEIYHELK-NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKS 236

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    V V   L+ MY +F     AR++FD+M VRDS S+N MI GY +     E++ + 
Sbjct: 237 GVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF 296

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E  L+    D +TV+S+L  C    ++     I+ Y++K G      V N LI++YAK 
Sbjct: 297 LE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKC 355

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VF+ M  +D VSWNSII+ Y QS D + A   F  M     Q D +T + L 
Sbjct: 356 GDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLI 415

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+  +L D +  + +H   ++ G  + D+ + NA++DMYAK G +  +  +F  +   D 
Sbjct: 416 SVSTRLADLKFGKGLHSNGIKSGICI-DLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDT 474

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WNT+I+   + G  +  ++V   M + +E+ P+  T++  LP  + + A R G +IH 
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRK-SEVVPDMATFLVTLPMCASLAAKRLGKEIHC 533

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++     ++ +   L++MY KCG ++++  +F ++ R   V W  +I  +G++G+G+K
Sbjct: 534 CLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEK 593

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M   G+ PD + F++++ ACSHSGLV EG   F  M+  + I P ++HY C+V
Sbjct: 594 ALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVV 653

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+  +  A  FIQ MP++PDASIW ++L ACR  G+ME     S R+ E++ ++ G
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPG 713

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y +L SN YA + KW+ V  +R   +D+ + K PG+S IEV   V +F +G+ + P+ E 
Sbjct: 714 YSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEA 773

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDV-EEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           IY  L  L + M   GY+PD   V Q++ EE+EK  ++  HSERLAIAFG++++ P +P+
Sbjct: 774 IYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPL 833

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           Q+ KNLRVCGDCH  TK IS+I  REI+VRD+NRFH FKDG CSC D W
Sbjct: 834 QVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 279/525 (53%), Gaps = 15/525 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  + + G   EA++ FY     S + PD YTFP V+KAC  L D   G  ++  +L +
Sbjct: 77  IIRAFSKNGLFPEALE-FYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDM 135

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D+FV  +L+ MY R GL   AR++FD+MPVRD  SWN++ISGY   G   EAL+I 
Sbjct: 136 GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E++   +  D  TV+S+LP       +  G  +H + +K G+   + V+N L+ MY KF
Sbjct: 196 HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
                A RVFD+M  RD VS+N++I  Y   E   + +    F   + Q   +PDLLT+ 
Sbjct: 256 RRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRM--FLENLDQ--FKPDLLTVS 311

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+      L D   ++ ++ ++++ G+ +E   + N ++D+YAK G + +A  VF  +  
Sbjct: 312 SVLRACGHLRDLSLAKYIYNYMLKAGFVLEST-VRNILIDVYAKCGDMITARDVFNSMEC 370

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD +SWN++I+GY Q+G   EA+++F+MM    E   +  TY+ ++   + +  L+ G  
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLADLKFGKG 429

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H+  IK+ +C D+ V+  L+DMY KCG + D++ +F  +    +V WN +IS     G 
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGD 489

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
               L    QM    V PD  TF+  L  C+       G+   H     FG +  L+   
Sbjct: 490 FATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGN 548

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            +++++ + G L  +    + M  R D   W  ++ A  ++G  E
Sbjct: 549 ALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGE 592



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 241/485 (49%), Gaps = 6/485 (1%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGS 96
           L +  NL + ++IH  V+ LG +   F +  L+  Y  F     +  +F  + P ++   
Sbjct: 14  LSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYL 73

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN++I  + ++G   EAL+   ++R   VS D  T  S++  CA   +   G L++  I+
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             G E +LFV N L++MY++ G++  A +VFD+M  RD+VSWNS+I+ Y        A  
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            +  ++ + I PD  T+ S+      L   +  + +HGF ++ G     V++ N +V MY
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSG-VNSVVVVNNGLVAMY 252

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K      A  VF+ + V+D +S+NT+I GY +  +  E++ +F  +E  ++  P+  T 
Sbjct: 253 LKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--LENLDQFKPDLLTV 310

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S+L A  H+  L     I+  ++K     +  V   L+D+Y KCG +  A  +F  +  
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMEC 370

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
             +V WN+IIS +   G   +A+  F+ M+    + DHIT++ L++  +    +  G+  
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG- 429

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    + GI   L     ++D++ + G +G +     +M    D   W  ++ AC   G
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT-GDTVTWNTVISACVRFG 488

Query: 517 NMELG 521
           +   G
Sbjct: 489 DFATG 493


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/695 (39%), Positives = 394/695 (56%), Gaps = 40/695 (5%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVRDSGSWNAMISG 103
           + IH  ++K G     +  + L+  +C     F     A  +F+ +   +   WN M  G
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           +  S + V AL +   M   G+  +  T   +L  CA+S     G  IH +++K G + +
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS-------------------------- 197
           L+V  +LI+MY + G +  A +VFDQ   RDVVS                          
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 198 -----WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
                WN++I+ Y ++ +   A   F  M +  ++PD  T+VS+ S  AQ       R V
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H +I   G F  ++ I NA++D+Y K G + +AC +FEGL  KDVISWNTLI GY    L
Sbjct: 243 HSWIDDHG-FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA- 371
             EA+ +FQ M    E +PN  T +SILPA +H+GA+  G  IH  + K         + 
Sbjct: 302 YKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 372 -TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A + F +M    +
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            PD ITFV LL+ACSHSG++  G+  F  M+E++ I P L+HYGCM+DL G +G    A 
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 480

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
             I  M + PD  IW +LL AC++HGN+ELG   +  L +++ +N G YVL+SNIYA  G
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +W  V ++R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY  L  +   ++
Sbjct: 541 RWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 600

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I KNLRVC +CH 
Sbjct: 601 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHE 660

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 661 ATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 236/457 (51%), Gaps = 46/457 (10%)

Query: 12  SEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVA 66
           S+ V   Y +   ++ GL P+ YTFP +LK+C   +   +G++IH  VLKLG++ D++V 
Sbjct: 67  SDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVH 126

Query: 67  ASLLHMYCRFGLANVAR-------------------------------KLFDDMPVRDSG 95
            SL+ MY + G    AR                               K+FD++P++D  
Sbjct: 127 TSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVV 186

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWNAMISGY ++GN  EAL++  EM    V  D  T+ S++  CA+S +I  G  +H +I
Sbjct: 187 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 246

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
             HG   NL + N LI++Y K G +  A  +F+ +  +DV+SWN++I  Y   N    A 
Sbjct: 247 DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 306

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN----A 271
             F  M ++G  P+ +T++S+    A L      R +H +I +R   ++ V   +    +
Sbjct: 307 LLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR---LKGVANASSHRTS 363

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           ++DMYAK G I +A  VF+ +  + + SWN +I G+A +G A+ A ++F  M + NEI P
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK-NEIEP 422

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSL 390
           +  T+V +L A SH G L  G  I   + ++  +   +    C++D+ G  G   +A  +
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482

Query: 391 FYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
              +      V W +++    +HG  +   ++ + ++
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLI 519



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 164/363 (45%), Gaps = 9/363 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y   G   EA++ F +  + + +RPD  T   V+ AC        G+++H  +   
Sbjct: 191 MISGYAETGNNKEALELFKEM-MKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDH 249

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ +Y + G    A  LF+ +  +D  SWN +I GY       EAL + 
Sbjct: 250 GFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 309

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
            EM   G S + +T+ SILP CA    I  G  IH+YI K   G+        +LI+MYA
Sbjct: 310 QEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYA 369

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VFD ++ R + SWN++I  +        A   F+ M++  I+PD +T V 
Sbjct: 370 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 429

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S  +        R +   +         +     ++D+    G+   A  +   + ++
Sbjct: 430 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 489

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            D + W +L+     +G         Q + +    NP  G+YV +   Y+  G   +  K
Sbjct: 490 PDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNP--GSYVLLSNIYATAGRWNEVAK 547

Query: 355 IHA 357
           I A
Sbjct: 548 IRA 550


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/739 (36%), Positives = 424/739 (57%), Gaps = 37/739 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y   G   EA+  F +  + SG+ PD YTFP  L  C   R+  +G +IH  ++K+
Sbjct: 104 LIRGYASSGLCKEAILLFIRM-MNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKM 162

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  D+FV  SL+H Y   G  + ARK+FD+M  R+  SW +MI GY +   A +A+D+ 
Sbjct: 163 DYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLF 222

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M R E V  + +T+  ++  CA+ +++ +G  ++ +I   G+E N  + + L++MY K
Sbjct: 223 FRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMK 282

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A R+FD+    ++   N++ + Y +      A G    M  +GI+PD ++++S 
Sbjct: 283 CNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSA 342

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----------------- 279
            S  +QL +    +S HG+++R G+   D I  NA++DMY K                  
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDMYMKCHRQDTAFRIFDRMSNKT 401

Query: 280 --------------GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
                         G +++A   F  +P K+++SWNT+I+   Q  +  EAIEVF  M+ 
Sbjct: 402 VVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQS 461

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              +N +  T +SI  A  H+GAL     I+  + KN +  DV + T LVDM+ +CG  +
Sbjct: 462 QECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPE 521

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            AMS+F  +       W A I    + G  ++A+  F +M+++G++PD + F+  LTAC 
Sbjct: 522 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACC 581

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV +G+  F+ M++  G+ P   HYGCMVDL GRAG L  A   I++MP  P+  IW
Sbjct: 582 HGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIW 641

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            +LL ACR+ GN+E+ A A++++  +  E  G YVL+SN+YA+ G+W  + +VR   +++
Sbjct: 642 NSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 701

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GL+K PG S I++  K   F +G+ +HP+  KI   L  L+ +   LG+VPD S VL DV
Sbjct: 702 GLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDV 761

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E EK  +L+ HSE+LA+AFG+ISS   + I+I KNLRVC  CH++ KF S++  REII+
Sbjct: 762 DEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIIL 821

Query: 686 RDSNRFHHFKDGICSCGDY 704
           RD+NRFH  + G CSC D+
Sbjct: 822 RDNNRFHFIRQGKCSCSDF 840



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 246/510 (48%), Gaps = 45/510 (8%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFDDMPV 91
           P  LK C+ + + K  H S+ K G + DV     L+   C  G     + A+++F++   
Sbjct: 35  PSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGES 94

Query: 92  RDSG-SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             +   +N++I GY  SG   EA+ +   M   G+S D  T    L VCA+S +  +G+ 
Sbjct: 95  YGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQ 154

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQ 207
           IH  I+K     +LFV N+L++ YA+ G +  A +VFD+M ER+VVSW S+I  Y   E 
Sbjct: 155 IHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREF 214

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           + D +    FF  ++   + P+ +T+V + S  A+L D      V+ FI   G  + D++
Sbjct: 215 AKDAVDL--FFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLM 272

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           I +A+VDMY K   I+ A  +F+     ++   N + + Y + GL  EA+ V  +M + +
Sbjct: 273 I-SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMD-S 330

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I P++ + +S + + S +  +  G   H  V++N       +   L+DMY KC R D A
Sbjct: 331 GIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 390

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-------------------- 427
             +F ++   + V WN+I++ +  +G+ D A   F  M +                    
Sbjct: 391 FRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYE 450

Query: 428 ------------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
                       E V  D +T +S+ +AC H G +   +  ++ + E+  I+  ++    
Sbjct: 451 EAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYI-EKNRIQLDVRLGTT 509

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           +VD+F R G    A +   ++  R D S W
Sbjct: 510 LVDMFSRCGDPESAMSIFNSLTNR-DVSAW 538


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/708 (37%), Positives = 401/708 (56%), Gaps = 6/708 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y +  +  EA + F +     G   + + F  VLK   ++     G+ +H  VLK+
Sbjct: 17  LIHGYAQSNKFIEAFELFARLH-GEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKV 75

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  + F+  +L+  Y   G  ++AR++FD++  +D  SW  MI+ Y ++    EAL+  
Sbjct: 76  GYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFF 135

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR+ G   +  T A +L  C    N  +G  +H  ++K   E +L+V   L+ +Y + 
Sbjct: 136 SQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRC 195

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A R F  M + DV+ W+ +I+ + QS     A   F  M++A + P+  T  S+ 
Sbjct: 196 GDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVL 255

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +     S+++HG  ++ G    DV + NA++  YAK G I  +  +FE L  ++ 
Sbjct: 256 QASADIESLDLSKTIHGHALKAG-LSTDVFVSNALMACYAKCGCIEQSMELFEALSDRND 314

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I  Y Q G    A+ +F  M    ++   + TY SIL A + + AL  G+++H 
Sbjct: 315 VSWNTIIVSYVQLGDGERALSLFSNMLR-YQVQATEVTYSSILRACATLAALELGLQVHC 373

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
              K     DV V   L+DMY KCG I DA  +F  +     V WNAII  + +HG G +
Sbjct: 374 LTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVE 433

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F  M +   +PD +TFV +L+ACS++G + EG++YF  M++++GI+P ++HY CMV
Sbjct: 434 AIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMV 493

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            L GR+G+L  A  FI+++P  P   IW ALLGAC IH ++ELG +++ R+ E++  +  
Sbjct: 494 WLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEA 553

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            +VL+SNIYA   +W  V  VR   + +G+KK PG S IE    V  F   + +H   + 
Sbjct: 554 SHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKL 613

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L  L  K +  GY P  + VL DVE+DEKE +L  HSERLA+AFG++  P   PI+
Sbjct: 614 INGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIR 673

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLR+C DCH+  K IS+I  R+IIVRD NRFHHF++G CSC DYW
Sbjct: 674 IIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 249/490 (50%), Gaps = 14/490 (2%)

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FD+MP R++ S+  +I GY QS   +EA ++   +  EG  ++P    ++L +    + 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
              G ++H  ++K G   N F+   LI+ Y+  G +  A  VFD++  +D+VSW  +IA+
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y +++    A  FF+ M+ AG +P+  T   +      L +    ++VH  +++   +  
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTN-YER 180

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D+ +G  ++++Y + G  + A   F  +P  DVI W+ +I+ +AQ+G + +A+E+F  M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
               I PNQ T+ S+L A + + +L     IH   +K  L  DVFV+  L+  Y KCG I
Sbjct: 241 RAFVI-PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + +M LF  +   + V WN II  +   G G++AL+ F  ML   V+   +T+ S+L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +    +  G +  H +  +      +     ++D++ + G +  A      + +R   S 
Sbjct: 360 ATLAALELGLQ-VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVS- 417

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVG-----YYVLMSNIYANVGKW-EGVDEV 558
           W A++    +HG   LG V + ++F +  E         +V + +  +N G+  EG    
Sbjct: 418 WNAIICGYSMHG---LG-VEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYF 473

Query: 559 RSLARDRGLK 568
            S+ +D G++
Sbjct: 474 TSMKQDYGIE 483


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/655 (41%), Positives = 372/655 (56%), Gaps = 35/655 (5%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R+     AR LFD MP RD  SWNAM+SGY Q+G   EA +I DEM  +    + I+   
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNG 97

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L    ++  I         + +   ++ L   N ++  Y K   +  A  +FD+M ERD
Sbjct: 98  MLAAYVQNGRIEDAR----RLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERD 153

Query: 195 VVSWNSIIAAYEQSNDPITAHGFF-----------TTMQQAGIQPDLL------------ 231
            VSWN++I+ Y Q+ + + A   F           T M    +Q  +L            
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 213

Query: 232 -TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
              VS  +I+A    C+  R      +      ++V   N ++  YA+ G I  A   F+
Sbjct: 214 KNSVSWNAIIAGYVQCK--RMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFD 271

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P +D ISW  +I GYAQ+G   EA+ +F  M+   E   N+ T+ S L   + + AL 
Sbjct: 272 RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALE 330

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G ++H RV+K  L    +V   L+ MY KCG IDDA  +F  +     V WN +I+ + 
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 390

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG G +AL  F  M   G+ PD +T V +L+ACSH+GLV +G  YF+ M +++GI  + 
Sbjct: 391 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANS 450

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KHY CM+DL GRAG L  A N ++NMP  PDA+ WGALLGA RIHGN ELG  A+  +FE
Sbjct: 451 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE 510

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++ +N G YVL+SN+YA  G+W  V  +R   RDRG+KK PG+S +EV NK+  F  G+ 
Sbjct: 511 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDS 570

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
            HP+ ++IY  L  L  KMK  GYV     VL DVEE+EK H+L  HSE+LA+AFGI++ 
Sbjct: 571 VHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAI 630

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P   PI++ KNLRVC DCHN  K IS+I  R II+RDS+RFHHF  G CSCGDYW
Sbjct: 631 PAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 223/474 (47%), Gaps = 49/474 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S Y + G + EA + F +    + +  +     Y     ++  R L + K        
Sbjct: 67  MLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA------- 119

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              +W++     ++  Y +      AR +FD MP RD  SWN MISGY Q+G  +EA  +
Sbjct: 120 ---DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 176

Query: 117 LDEMRLEGVSMDPITVASILP--VCARSDNILSGL----------LIHLYI----VKHGL 160
            +E  +  V      V+  +   +   +  +  G+          +I  Y+    +    
Sbjct: 177 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAR 236

Query: 161 EF-------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           E        N+   N +I  YA+ G +  A   FD+M +RD +SW +IIA Y QS     
Sbjct: 237 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M++ G + +  T  S  S  A++      + VHG +++ G       +GNA++
Sbjct: 297 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALL 355

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY K G I+ A  VFEG+  K+V+SWNT+I GYA++G   EA+ +F+ M++   I P+ 
Sbjct: 356 VMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG-ILPDD 414

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T V +L A SH G + +G +    + ++  +  +    TC++D+ G+ GR+DDA +L  
Sbjct: 415 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 474

Query: 393 QVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +P    +  W A++    IHG    G+KA     +M      PD+     LL+
Sbjct: 475 NMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 523



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 166/381 (43%), Gaps = 44/381 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQ------FTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSV 54
           MIS Y + G L EA   F +      FT T+ +    Y    +L   R + DG     SV
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSG--YVQNGMLDEARRVFDGMPEKNSV 217

Query: 55  LKLGFEWDVFVAA--------------------------SLLHMYCRFGLANVARKLFDD 88
                 W+  +A                           +++  Y + G    AR  FD 
Sbjct: 218 -----SWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDR 272

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP RDS SW A+I+GY QSG   EAL +  EM+ +G  ++  T  S L  CA    +  G
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 332

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H  +VK GLE   +V N L+ MY K G +  A  VF+ + E++VVSWN++IA Y + 
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A   F +M++ GI PD +T+V + S  +              + +      +   
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
              ++D+  + G ++ A  + + +P + D  +W  L+     +G      +  +M+    
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI---F 509

Query: 328 EINP-NQGTYVSILPAYSHVG 347
           E+ P N G YV +   Y+  G
Sbjct: 510 EMEPDNSGMYVLLSNLYAASG 530



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 40/321 (12%)

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS------------ 208
           EF+ F+  + +    ++  +R A  +FDQM ERDVVSWN++++ Y Q+            
Sbjct: 28  EFD-FLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 86

Query: 209 ---NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN-DCRNSRSVHGFIMR------ 258
               + I+ +G      Q G   D   L    +    ++ +C     + G++ R      
Sbjct: 87  MPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNC----MMGGYVKRNRLVDA 142

Query: 259 RGWF----MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           RG F      D +  N ++  YA+ G +  A  +FE  PV+DV +W  +++GY QNG+  
Sbjct: 143 RGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLD 202

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA  VF  M E N ++ N     +I+  Y     + Q  ++     +   C +V     +
Sbjct: 203 EARRVFDGMPEKNSVSWN-----AIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTM 253

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +  Y + G I  A + F ++P+  S+ W AII+ +   G G++AL+ F +M  +G R + 
Sbjct: 254 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 313

Query: 435 ITFVSLLTACSHSGLVSEGQR 455
            TF S L+ C+    +  G++
Sbjct: 314 STFTSTLSTCAEIAALELGKQ 334


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/710 (38%), Positives = 409/710 (57%), Gaps = 37/710 (5%)

Query: 32  YTFPPVLKACRNLV--DGKKI----HCSVLKLGF---EWDVFVAASLLHMYCRFGLANVA 82
           +T   VL AC +L   DG+++    H   LK GF     + F   +LL MY R GL + A
Sbjct: 170 FTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDA 229

Query: 83  RKLFDDMPVR------DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           + LF            D  +WN MIS   Q G   EA+++L +M   GV  D +T AS L
Sbjct: 230 QSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASAL 289

Query: 137 PVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--R 193
           P C+R + +  G  +H  ++K   L  N FV++ L++MYA    +  A RVFD + E  R
Sbjct: 290 PACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSR 349

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            +  WN++I  Y Q+     A   F+ M+ +AG  P   T+  +    A+        ++
Sbjct: 350 QLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAM 409

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HG++++RG    +  + NA++DMYA+LG ++ A  +F  +  +DV+SWNTLITG    G 
Sbjct: 410 HGYVVKRG-MAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGH 468

Query: 313 ASEAIEVFQMME---------------ECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           A+EA ++   M+               E +   PN  T +++LP  + + A  +G +IH 
Sbjct: 469 AAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHG 528

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +++ L  D+ V + LVDMY KCG +  + ++F ++PR + + WN +I  +G+HG GD+
Sbjct: 529 YAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDE 588

Query: 418 ALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           A+  F +M   G   P+ +TF++ L ACSHSGLV  G   FH M+ + G+KP    + C+
Sbjct: 589 AVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACV 648

Query: 477 VDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           VD+ GRAG L  A++ I +M P     S W +LLGACR+H N+ELG VA++RLFE++   
Sbjct: 649 VDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGE 708

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
             +YVL+ NIY+  G W+    VR   R +G+ K PG S IE++  +  F  G  +HP  
Sbjct: 709 ASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPAS 768

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            +++  +  L  +M+  GY PD S VL DV+EDEK  +L  HSE+LAIAFG++ +PP + 
Sbjct: 769 AEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAA 828

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLRVC DCH   KF+S++  R+I++RD  RFHHF+DG CSCGDYW
Sbjct: 829 IRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 234/438 (53%), Gaps = 28/438 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK- 56
           MIS+ V+ GR +EAV+  Y   ++ G+RPD  TF   L AC     L  G+++H  VLK 
Sbjct: 253 MISLLVQGGRCAEAVEVLYDM-VSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKD 311

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDM--PVRDSGSWNAMISGYCQSGNAVEAL 114
                + FVA++L+ MY        AR++FD +  P R  G WNAMI GY Q+G   EAL
Sbjct: 312 ADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEAL 371

Query: 115 DILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           ++   M  E G +    T++ +LP CARS+       +H Y+VK G+  N FV N L++M
Sbjct: 372 ELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDM 431

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ----------- 222
           YA+ G M  A R+F  +  RDVVSWN++I           A    T MQ           
Sbjct: 432 YARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSST 491

Query: 223 -QAG----IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
            + G      P+ +TL++L    A L      + +HG+ +R      D+ +G+A+VDMYA
Sbjct: 492 TEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHA-LESDIAVGSALVDMYA 550

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G + ++ AVF+ LP ++VI+WN LI  Y  +GL  EA+ +F  M    E  PN+ T++
Sbjct: 551 KCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFI 610

Query: 338 SILPAYSHVGALRQGIKI-HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV-P 395
           + L A SH G + +G+++ H     + +     +  C+VD+ G+ GR+D+A S+   + P
Sbjct: 611 AALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEP 670

Query: 396 RSSSV-PWNAIISCHGIH 412
               V  W++++    +H
Sbjct: 671 GEQQVSAWSSLLGACRLH 688



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 147/583 (25%), Positives = 248/583 (42%), Gaps = 43/583 (7%)

Query: 30  DFYTFPPVLKACRNLVDGK---KIHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D +  PP +K+   L D +    +H + L+          V  +LL  Y R G  + A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 85  LFDDM--PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCAR 141
           LF      +RD+ S+N++IS  C       ALD L +M  EG   +   T+ S+L  C+ 
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSH 181

Query: 142 ---SDNILSGLLIHLYIVKHGL---EFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-- 193
               D    G   H + +K G        F  N L++MYA+ G++  A  +F        
Sbjct: 182 LPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFS 241

Query: 194 ----DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
               DVV+WN++I+   Q      A      M   G++PD +T  S     ++L      
Sbjct: 242 PGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALG 301

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLITGY 307
           R +H  +++      +  + +A+VDMYA    + SA  VF+ +  P + +  WN +I GY
Sbjct: 302 REMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGY 361

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           AQ G+  EA+E+F  ME      P++ T   +LPA +          +H  V+K  +  +
Sbjct: 362 AQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGN 421

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM-- 425
            FV   L+DMY + G +D A  +F  +     V WN +I+   + G   +A     +M  
Sbjct: 422 RFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQL 481

Query: 426 ----------LDEG----VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
                      +EG      P++IT ++LL  C+     + G+   H       ++  + 
Sbjct: 482 PSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKE-IHGYAVRHALESDIA 540

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF-- 529
               +VD++ + G L  +      +P R +   W  L+ A  +HG  +      D +   
Sbjct: 541 VGSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMAYGMHGLGDEAVALFDEMAAG 599

Query: 530 -EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
            E     V +   ++    +     G++    + RD G+K TP
Sbjct: 600 GEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTP 642


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/665 (37%), Positives = 391/665 (58%), Gaps = 3/665 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           + L  GK++H  +++ G   + F++   L++Y + G  +   KLFD M  R+  SW ++I
Sbjct: 89  KELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSII 148

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           +G+  +    EAL    +MR+EG       ++S+L  C     I  G  +H  +VK G  
Sbjct: 149 TGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFG 208

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             LFV +NL +MY+K G +  A + F++M  +D V W S+I  + ++ D   A   +  M
Sbjct: 209 CELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM 268

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
               +  D   L S  S  + L      +S+H  I++ G F  +  IGNA+ DMY+K G 
Sbjct: 269 VTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLG-FEYETFIGNALTDMYSKSGD 327

Query: 282 INSACAVFE-GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
           + SA  VF+       ++S   +I GY +     +A+  F  +     I PN+ T+ S++
Sbjct: 328 MVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRR-RGIEPNEFTFTSLI 386

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A ++   L  G ++H +V+K     D FV++ LVDMYGKCG  D ++ LF ++     +
Sbjct: 387 KACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEI 446

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            WN ++     HG G  A+  F  M+  G++P+ +TFV+LL  CSH+G+V +G  YF  M
Sbjct: 447 AWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSM 506

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           ++ +G+ P  +HY C++DL GRAG L  A +FI NMP  P+   W + LGAC+IHG+ME 
Sbjct: 507 EKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMER 566

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
              A+D+L +++ EN G +VL+SNIYA   +WE V  +R + +D  + K PG+S +++ N
Sbjct: 567 AKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRN 626

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           K  +F   + +HP+ ++IY++L NL  ++K +GYVP    VL D++++ KE +L  HSER
Sbjct: 627 KTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSER 686

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           +A+AF +++ P   PI + KNLRVC DCH+  KFIS++TER IIVRD +RFHHF +G CS
Sbjct: 687 IAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCS 746

Query: 701 CGDYW 705
           CGDYW
Sbjct: 747 CGDYW 751



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 193/391 (49%), Gaps = 7/391 (1%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  TVA ++   AR+  +  G  +H  +++ G   N F+SN+ +N+Y+K G + + +++F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D+M +R++VSW SII  +  ++    A   F  M+  G       L S+      L   +
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               VH  +++ G+  E + +G+ + DMY+K G ++ AC  FE +P KD + W ++I G+
Sbjct: 194 FGTQVHCLVVKCGFGCE-LFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGF 252

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+  +  M   +++  +Q    S L A S + A   G  +HA ++K    ++
Sbjct: 253 VKNGDFKKALTAYMKMVT-DDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYE 311

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCHGIHGQGDKALNFFRQM 425
            F+   L DMY K G +  A ++F Q+     S V   AII  +    Q +KAL+ F  +
Sbjct: 312 TFIGNALTDMYSKSGDMVSASNVF-QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
              G+ P+  TF SL+ AC++   +  G +  H    +F  K        +VD++G+ G 
Sbjct: 371 RRRGIEPNEFTFTSLIKACANQAKLEHGSQ-LHGQVVKFNFKRDPFVSSTLVDMYGKCGL 429

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              +      +   PD   W  L+G    HG
Sbjct: 430 FDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG 459



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 106/209 (50%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  YV   ++ +A+  F       G+ P+ +TF  ++KAC N   L  G ++H  V+K 
Sbjct: 350 IIDGYVEMDQIEKALSTFVDLR-RRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKF 408

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ D FV+++L+ MY + GL + + +LFD++   D  +WN ++  + Q G    A++  
Sbjct: 409 NFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETF 468

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           + M   G+  + +T  ++L  C+ +  +  GL     + K +G+       + +I++  +
Sbjct: 469 NGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGR 528

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G ++ A    + M  E +V  W S + A
Sbjct: 529 AGKLKEAEDFINNMPFEPNVFGWCSFLGA 557


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/645 (40%), Positives = 371/645 (57%), Gaps = 37/645 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN M+ G+  S + V AL++   M   G   +  +   +L  CA+S     G  IH  ++
Sbjct: 32  WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVL 91

Query: 157 KHGLEFNLFVSNNLINMYAKFGMM-------------------------------RHALR 185
           K G   + +V  +LI+MYA+ G +                               R A +
Sbjct: 92  KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARK 151

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VFD++ ERDVVSWN++I  Y ++     A   F  M +  ++PD  TLVS+ S  AQ   
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGS 211

Query: 246 CRNSRSVHGFIMRRGW---FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
               R VH ++        F   + I NA++D+Y+K G + +A  +FEGL  KDV+SWNT
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNT 271

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI GY    L  EA+ +FQ M    E  PN  T +S+LPA +H+GA+  G  IH  + K 
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGEC-PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKK 330

Query: 363 C--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
              +  +  + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A +
Sbjct: 331 LKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFD 390

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M    V PD ITFV LL+ACSHSGL+  G++ F  M +++ + P L+HYGCM+DL 
Sbjct: 391 LFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLL 450

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           G +G    A   I  MP+ PD  IW +LL AC+ HGN+EL    + +L +++ EN G YV
Sbjct: 451 GHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYV 510

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA  G+WE V  VR +   +G+KK PG SSIEV++ V  F  G++ HP+  +IY 
Sbjct: 511 LLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYH 570

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            L  +  +++  G+ PD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I K
Sbjct: 571 MLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 630

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVC +CH  TK IS+I +REI+ RD  RFHHF+DG+CSC DYW
Sbjct: 631 NLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 235/466 (50%), Gaps = 44/466 (9%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ G  P+ Y+FP +LK+C   +   +G++IH  VLKLG   D +V  SL+ MY 
Sbjct: 51  MYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYA 110

Query: 75  R-FGLANV------------------------------ARKLFDDMPVRDSGSWNAMISG 103
           R  GL +                               ARK+FD++  RD  SWNAMI+G
Sbjct: 111 RNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITG 170

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI----VKHG 159
           Y ++G   EAL++  EM    V  D  T+ S++  CA+S +I  G  +H ++      HG
Sbjct: 171 YVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHG 230

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
              +L + N LI++Y+K G +  A  +F+ +  +DVVSWN++I  Y  +N    A   F 
Sbjct: 231 FSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQ 290

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR-GWFMEDVIIGNAVVDMYAK 278
            M ++G  P+ +TL+S+    A L      R +H +I ++      +  +  +++DMYAK
Sbjct: 291 EMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAK 350

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G I +A  VF  +  + + SWN +I G+A +G A+ A ++F  M   N + P+  T+V 
Sbjct: 351 CGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRG-NRVEPDDITFVG 409

Query: 339 ILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-R 396
           +L A SH G L  G +I   + ++  L   +    C++D+ G  G   +A  + + +P  
Sbjct: 410 LLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME 469

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
              V W +++     HG  + A +F ++++   + P++     LL+
Sbjct: 470 PDGVIWCSLLKACKKHGNLELAESFAQKLIK--IEPENSGSYVLLS 513



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 193/405 (47%), Gaps = 41/405 (10%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A+ VF+ + E +++ WN+++  +  S+DP++A   +  M   G  P+  +   L
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFME------------------------------DV 266
               A+       R +H  +++ G  ++                              DV
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A++  YA  G   SA  VF+ +  +DV+SWN +ITGY +NG   EA+E+F+ M   
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARV----IKNCLCFDVFVATCLVDMYGKCG 382
           N + P++GT VS++ A +  G++  G ++H+ V      +     + +   L+D+Y KCG
Sbjct: 191 N-VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            ++ A  LF  +     V WN +I  +       +AL  F++ML  G  P+ +T +S+L 
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 443 ACSHSGLVSEGQRYFHMM--QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           AC+H G +  G R+ H+   ++  G+         ++D++ + G +  AH    +M  R 
Sbjct: 310 ACAHLGAIDIG-RWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRS 368

Query: 501 DASIWGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMS 543
            +S W A++    +HG  N      +  R   V+ +++ +  L+S
Sbjct: 369 LSS-WNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 170/358 (47%), Gaps = 15/358 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI+ YV  GR  EA++ F +   T+ +RPD  T   V+ AC    ++  G+++H  V   
Sbjct: 167 MITGYVENGRYEEALELFKEMMRTN-VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDD 225

Query: 58  ----GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
               GF   + +  +L+ +Y + G    A  LF+ +  +D  SWN +I GY  +    EA
Sbjct: 226 DDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEA 285

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLI 171
           L +  EM   G   + +T+ S+LP CA    I  G  IH+YI K   G+     +  +LI
Sbjct: 286 LLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLI 345

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           +MYAK G +  A +VF+ M+ R + SWN++I  +        A   F+ M+   ++PD +
Sbjct: 346 DMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDI 405

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T V L S  +        R +   + +       +     ++D+    G+   A  +   
Sbjct: 406 TFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHT 465

Query: 292 LPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
           +P++ D + W +L+    ++G   E  E F   ++  +I P N G+YV +   Y+  G
Sbjct: 466 MPMEPDGVIWCSLLKACKKHG-NLELAESFA--QKLIKIEPENSGSYVLLSNIYATAG 520


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/713 (36%), Positives = 419/713 (58%), Gaps = 12/713 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC----RNLVDGKKIHCSVLK 56
           +IS +   G   +A+  F +  L SG+ PD  TF  +L       RNL +GK++H  +++
Sbjct: 87  LISAFTFAGHFGDAMVLFRKMLL-SGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQ 145

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G+E D  V   ++ MY + G    A  +FD +   +  SW  +I+ Y Q+G+ +E L +
Sbjct: 146 TGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRL 205

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYA 175
           L  M   GV  D  T  ++L  C     +    ++H   +   GL+ +  V   LIN+Y 
Sbjct: 206 LSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYG 265

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A  VF Q+  +D+VSW+S+IAA+ QS    +A      M   G++P+ +T V+
Sbjct: 266 KCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVN 325

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +   V  L   +  + +H  I++ G + +DV + +A+V MY   G + +A ++FE    +
Sbjct: 326 VLEAVTSLKAFQYGKEIHARIVQAG-YSDDVCLTSALVKMYCNWGWVETARSIFESSRER 384

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV+SW+++I GY+QN   + A+ +F+ ME  + + PN  T+VS + A + VGALR+G ++
Sbjct: 385 DVVSWSSMIAGYSQNESPARALSLFREME-VDGVQPNSVTFVSAIDACAGVGALRRGTQL 443

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H RV    L  DV VAT LV++YGKCGR+++A ++F  + + + + W +I   +G +G G
Sbjct: 444 HERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHG 503

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            ++L     M  +G++PD I FV++L +C+++G +S+G  Y+++M ++FGI P ++H GC
Sbjct: 504 SRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGC 563

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVD+ GRAG L  A   I  M      + W  LL AC+ H +    A A++++F+++ +N
Sbjct: 564 MVDILGRAGKLEAAEQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAEKIFQLEPKN 622

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+S+++   G WE  +E R     RG+++  G SSIE+ ++V  F   +   P +
Sbjct: 623 ATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHH 682

Query: 596 --EKIYDELRNLTAKMKSLGYVPDKSFV-LQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
              +I+  L  L  +M+  GYVPD + V L+DVEE  KE+ +  HSE LA+  GIIS+P 
Sbjct: 683 LVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPA 742

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +P++I KNLR+C DCH  TKF+S++  R I VRD  R HHF++G+CSCGDYW
Sbjct: 743 GTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/479 (29%), Positives = 247/479 (51%), Gaps = 11/479 (2%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLL-----HMYCRFGL 78
           ++ +      +L AC   R L +GK++H  V++     D     SLL      MY R G 
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI-LP 137
            ++A  +FD M  ++  +W ++IS +  +G+  +A+ +  +M L GVS D IT  SI L 
Sbjct: 66  TDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLK 125

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
              R  N+  G  +H +I++ G E +  V N ++ MY K G +  A  VFD + + +V S
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFS 185

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           W  IIAAY Q+   +      + M QAG++PD  T  ++      +     ++ +H   +
Sbjct: 186 WTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATI 245

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
                  D  +G A++++Y K G +  A  VF  +  KD++SW+++I  +AQ+G A  AI
Sbjct: 246 SSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAI 305

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           ++  +M +   + PN  T+V++L A + + A + G +IHAR+++     DV + + LV M
Sbjct: 306 QLLMLM-DLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKM 364

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y   G ++ A S+F        V W+++I+ +  +    +AL+ FR+M  +GV+P+ +TF
Sbjct: 365 YCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTF 424

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           VS + AC+  G +  G +  H      G+   +     +V+L+G+ G L  A      M
Sbjct: 425 VSAIDACAGVGALRRGTQ-LHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGM 482



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM----EDVIIGNAVVDMY 276
           M+   IQ ++    ++ +  + L      + VHG +MR         ++ ++ N V+ MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            + G  + A  VF+ +  ++V++W +LI+ +   G   +A+ +F+ M   + ++P++ T+
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKM-LLSGVSPDRITF 119

Query: 337 VSILPAYS-HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
            SIL  +S     L +G ++H+ +++     D  V   +V+MYGKCG ++ A ++F  + 
Sbjct: 120 TSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
             +   W  II+ +  +G   + L    +M   GV+PD  TF ++L AC+  G + E + 
Sbjct: 180 DPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN-FIQ 494
                    G+         +++L+G+ G L  A   F+Q
Sbjct: 240 LHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQ 279



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD-----VFVATCLVDMYG 379
           E  EI        +IL A S + AL +G ++H  V++  L  D       +   ++ MY 
Sbjct: 2   EAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYL 61

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +CG  D A+ +F ++   + V W ++IS     G    A+  FR+ML  GV PD ITF S
Sbjct: 62  RCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTS 121

Query: 440 LLTACS-HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           +L   S     + EG+R + H+MQ   G +        +V+++G+ G +  A N   ++ 
Sbjct: 122 ILLKWSGRERNLDEGKRVHSHIMQT--GYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 498 VRPDASIWGALLGA 511
             P+   W  ++ A
Sbjct: 180 -DPNVFSWTIIIAA 192


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/801 (35%), Positives = 424/801 (52%), Gaps = 108/801 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQF---------TLTSGL----------------------RP 29
           M++ YV+ GRLS+AV+ F +          TL SG                        P
Sbjct: 77  MLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSP 136

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           + +TF   +K+C  L +     ++   V K G + D  VAA+L+ M+ R G  ++A +LF
Sbjct: 137 NAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLF 196

Query: 87  -------------------------------DDMPVRDSGSWNAMISGYCQSGNAVEALD 115
                                          D MP RD  SWN M+S   QSG   EALD
Sbjct: 197 VRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           ++ +M+ +GV +D  T  S L  CAR  ++  G  +H  ++++    + +V++ L+ +YA
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYA 316

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G  + A  VF+ + +R+ V+W  +IA + Q      +   F  M+   +  D   L +
Sbjct: 317 KCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALAT 376

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----------------- 278
           L S      D    R +H   ++ G  ++ V++ N+++ MYAK                 
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQ-IQAVVVSNSLISMYAKCDNLQSAESIFRFMNEK 435

Query: 279 --------------LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
                         +G I  A   F+G+  K+VI+WN ++  Y Q+G   + + ++ +M 
Sbjct: 436 DIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVML 495

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
              ++ P+  TYV++    + +GA + G +I  R +K  L  D  VA  ++ MY KCGRI
Sbjct: 496 SEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRI 555

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
            +A  +F  +     V WNA+I+ +  HG G +A+  F  +L  G +PD+I++V++L+ C
Sbjct: 556 LEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC 615

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHSGLV EG+ YF MM+    I P L+H+ CMVDL GRAGHL  A + I  MP++P A +
Sbjct: 616 SHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEV 675

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WGALL AC+IHGN EL  +A+  +FE+DS + G Y+LM+ IYA+ GK +   ++R L RD
Sbjct: 676 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G+KK PG+S +EVNNKV +F   + +HP+   I  +L  L  K+  LGYV   S     
Sbjct: 736 KGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDS----- 790

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
                +  I   HSE+LA+AFG++S P   PI I KNLR+CGDCH   K IS +T RE +
Sbjct: 791 ----PRSEI--HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFV 844

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RD+ RFHHF  G CSCGDYW
Sbjct: 845 IRDAVRFHHFNGGSCSCGDYW 865



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 184/426 (43%), Gaps = 75/426 (17%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N ++N Y K G +  A+ +F +M  RDV SWN++++ Y QS   + +   F +M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 223 QAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           ++G   P+  T          L +   +  + G + + G   +D  +  A+VDM+ + G 
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFG-SQDDSDVAAALVDMFVRCGT 188

Query: 282 -------------------------------INSACAVFEGLPVKDVISWNTLITGYAQN 310
                                          ++ A  +F+ +P +DV+SWN +++  +Q+
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EA+++   M+    +  +  TY S L A + + +LR G ++HA+VI+N  C D +V
Sbjct: 249 GRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYV 307

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           A+ LV++Y KCG   +A  +F  +   ++V W  +I+    HG   +++  F QM  E +
Sbjct: 308 ASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 431 RPDHITFVSLLTACS-----------HSGLVSEGQ------------------------R 455
             D     +L++ C            HS  +  GQ                         
Sbjct: 368 TLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAES 427

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
            F  M E+      +  +  M+    + G++  A  F   M  + +   W A+LGA   H
Sbjct: 428 IFRFMNEK-----DIVSWTSMITAHSQVGNIAKAREFFDGMSTK-NVITWNAMLGAYIQH 481

Query: 516 GNMELG 521
           G  E G
Sbjct: 482 GAEEDG 487


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/680 (38%), Positives = 392/680 (57%), Gaps = 6/680 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A++ F +    SGL PD  T   +L AC +L D   G ++H  + K 
Sbjct: 215 LISGHAQCGHGEHALEIFEEMQF-SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  +  SLL +Y + G    A  +F+     +   WN M+  + Q  +  ++ ++ 
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T   IL  C  +  I  G  IH   VK G E +++VS  LI+MY+K+
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RV + + E+DVVSW S+IA Y Q      A   F  MQ+ GI PD + L S  
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +N  R    +H  I   G +  DV I NA+V++YA+ G I  A + FE +  KD 
Sbjct: 454 SGCAGINAMRQGLQIHARIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDE 512

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN L++G+AQ+GL  EA++VF  M++   +  N  T+VS L A +++  ++QG +IHA
Sbjct: 513 ITWNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RVIK    F+  V   L+ +YGKCG  +DA   F ++   + V WN II+    HG+G +
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M +E+GI+P   HY C++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+FGRAG L  A  FI+ MP+  DA +W  LL AC++H N+E+G  A+  L E++  +  
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSA 751

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA   KW   D+VR + RDRG++K PG S IEV N V  F+ G+R HP  E+
Sbjct: 752 SYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQ 811

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ L  +  ++  +GY  +K  +  D E++ ++     HSE+LA+ FG++S PP  P++
Sbjct: 812 IYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLR 871

Query: 658 IFKNLRVCGDCHNWTKFISQ 677
           + KNLRV      +  F+ Q
Sbjct: 872 VIKNLRVEKYTSLYANFLHQ 891



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 242/490 (49%), Gaps = 14/490 (2%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKK------IHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           GL P    F   L+ACR   +G++      IH   +  G      V   L+ +Y + GL 
Sbjct: 38  GLGP--LDFACALRACRG--NGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV 93

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR++F+++  RD+ SW AM+SGY Q+G   EAL +  +M   GV   P  ++S+L  C
Sbjct: 94  LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            +++    G LIH    KHG    +FV N +I +Y + G  R A RVF  M  RD V++N
Sbjct: 154 TKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFN 213

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+ + Q      A   F  MQ +G+ PD +T+ SL +  A L D +    +H ++ + 
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    D I+  +++D+Y K G + +A  +F      +V+ WN ++  + Q    +++ E+
Sbjct: 274 G-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M+    I PNQ TY  IL   +    +  G +IH+  +K     D++V+  L+DMY 
Sbjct: 333 FCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYS 391

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           K G ++ A  +   +     V W ++I+ +  H     AL  F++M   G+ PD+I   S
Sbjct: 392 KYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLAS 451

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            ++ C+    + +G +  H      G    +  +  +V+L+ R G +  A +  + +  +
Sbjct: 452 AISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK 510

Query: 500 PDASIWGALL 509
            D   W  L+
Sbjct: 511 -DEITWNGLV 519


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/669 (39%), Positives = 374/669 (55%), Gaps = 38/669 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           VL    +L   + +H  ++     ++  +   L+  Y        ARK+FD++P R+   
Sbjct: 49  VLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVII 108

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
            N MI  Y  +G   E + +   M    V  D  T   +L  C+ S NI+ G  IH    
Sbjct: 109 INVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSAT 168

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K GL   LFV N L++MY K G +  A  V D+M  RDVVSWNS++A Y Q+     A  
Sbjct: 169 KVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALE 228

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
               M+   I  D  T+ SL   V+                      E+V+    V DM+
Sbjct: 229 VCREMESVKISHDAGTMASLLPAVSNTT------------------TENVMY---VKDMF 267

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K+G              K ++SWN +I  Y +N +  EA+E++  ME  +   P+  + 
Sbjct: 268 FKMG-------------KKSLVSWNVMIGVYMKNAMPVEAVELYSGME-ADGFEPDAVSI 313

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S+LPA     AL  G KIH  + +  L  ++ +   L+DMY KCG +D A  +F  +  
Sbjct: 314 TSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKS 373

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V W A+IS +G  G+G  A+  F +M D G+ PD I FV+ L ACSH+GL+ EG+  
Sbjct: 374 RDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 433

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F +M + + I P L+H  CMVDL GRAG +  A+ FIQ MP+ P+  +WGALLGACR+H 
Sbjct: 434 FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHS 493

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           N ++G +A+D+LF++  E  GYYVL+SNIYA  G+WE V  +R++ + +GLKK PG S++
Sbjct: 494 NTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 553

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EVN  +  F  G+R+HP+  +IY EL  L  KMK LGYVPD    L DVEE++KE  L  
Sbjct: 554 EVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAV 613

Query: 637 HSERLAIAFGIISSPPK---SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           HSE+LAI F ++++  +   + I+I KNLR+CGDCH   K ISQIT REII+RD+NRFH 
Sbjct: 614 HSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHV 673

Query: 694 FKDGICSCG 702
           F+ G+CSC 
Sbjct: 674 FRFGVCSCA 682



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 216/432 (50%), Gaps = 57/432 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV  G   E +  F     +  ++PD YTFP VLKAC    N+V GKKIH S  K+
Sbjct: 112 MIRSYVNNGFYREGIQVFGTMC-SCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKV 170

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    +FV   L+ MY + G  + AR + D+M  RD  SWN++++GY Q+    +AL++ 
Sbjct: 171 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVC 230

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    +S D  T+AS+LP  + +                        + N+  MY K 
Sbjct: 231 REMESVKISHDAGTMASLLPAVSNT-----------------------TTENV--MYVK- 264

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                   +F +M ++ +VSWN +I  Y ++  P+ A   ++ M+  G +PD +++ S+ 
Sbjct: 265 -------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVL 317

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 +     + +HG+I R+   + ++++ NA++DMYAK G ++ A  VFE +  +DV
Sbjct: 318 PACGDTSALSLGKKIHGYIERKK-LIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+ Y  +G   +A+ +F  M++   + P+   +V+ L A SH G L +G     
Sbjct: 377 VSWTAMISAYGFSGRGCDAVALFSKMQDSGLV-PDSIAFVTTLAACSHAGLLEEG----- 430

Query: 358 RVIKNC--LCFDVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
              ++C  L  D +  T       C+VD+ G+ G++ +A     ++P   +   W A++ 
Sbjct: 431 ---RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLG 487

Query: 408 CHGIHGQGDKAL 419
              +H   D  L
Sbjct: 488 ACRVHSNTDIGL 499


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/680 (38%), Positives = 392/680 (57%), Gaps = 6/680 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A++ F +    SGL PD  T   +L AC +L D   G ++H  + K 
Sbjct: 215 LISGHAQCGHGEHALEIFEEMQF-SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  +  SLL +Y + G    A  +F+     +   WN M+  + Q  +  ++ ++ 
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T   IL  C  +  I  G  IH   VK G E +++VS  LI+MY+K+
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RV + + E+DVVSW S+IA Y Q      A   F  MQ+ GI PD + L S  
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +N  R    +H  I   G +  DV I NA+V++YA+ G I  A + FE +  KD 
Sbjct: 454 SGCAGINAMRQGLQIHARIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDE 512

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN L++G+AQ+GL  EA++VF  M++   +  N  T+VS L A +++  ++QG +IHA
Sbjct: 513 ITWNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RVIK    F+  V   L+ +YGKCG  +DA   F ++   + V WN II+    HG+G +
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M +E+GI+P   HY C++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+FGRAG L  A  FI+ MP+  DA +W  LL AC++H N+E+G  A+  L E++  +  
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSA 751

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA   KW   D+VR + RDRG++K PG S IEV N V  F+ G+R HP  E+
Sbjct: 752 SYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQ 811

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ L  +  ++  +GY  +K  +  D E++ ++     HSE+LA+ FG++S PP  P++
Sbjct: 812 IYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLR 871

Query: 658 IFKNLRVCGDCHNWTKFISQ 677
           + KNLRV      +  F+ Q
Sbjct: 872 VIKNLRVEKYTSLYANFLHQ 891



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 242/490 (49%), Gaps = 14/490 (2%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKK------IHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           GL P    F   L+ACR   +G++      IH   +  G      V   L+ +Y + GL 
Sbjct: 38  GLGP--LDFACALRACRG--NGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV 93

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR++F+++  RD+ SW AM+SGY Q+G   EAL +  +M   GV   P  ++S+L  C
Sbjct: 94  LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            +++    G LIH    KHG    +FV N +I +Y + G  R A RVF  M  RD V++N
Sbjct: 154 TKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFN 213

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+ + Q      A   F  MQ +G+ PD +T+ SL +  A L D +    +H ++ + 
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    D I+  +++D+Y K G + +A  +F      +V+ WN ++  + Q    +++ E+
Sbjct: 274 G-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M+    I PNQ TY  IL   +    +  G +IH+  +K     D++V+  L+DMY 
Sbjct: 333 FCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYS 391

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           K G ++ A  +   +     V W ++I+ +  H     AL  F++M   G+ PD+I   S
Sbjct: 392 KYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLAS 451

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            ++ C+    + +G +  H      G    +  +  +V+L+ R G +  A +  + +  +
Sbjct: 452 AISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK 510

Query: 500 PDASIWGALL 509
            D   W  L+
Sbjct: 511 -DEITWNGLV 519


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 415/709 (58%), Gaps = 12/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M++ Y + G    A+D + +  L    +P+   +  VL AC   + L +GK IH  +   
Sbjct: 95  MLTAYAQNGHYRAALDLYKRMDL----QPNPVVYTTVLGACASIKALEEGKAIHSRISGT 150

Query: 58  -GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G + DV +  SLL MY + G    A++LF+ M  R   SWNAMI+ Y QSG+  EA+ +
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRL 210

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++M +E       T  S+L  C+    +  G  IH  I   G E +L + N L+ MYA+
Sbjct: 211 YEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYAR 267

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A ++F ++  RDVVSW+++IAA+ +++    A  F++ MQ  G++P+  T  S+
Sbjct: 268 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASV 327

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A + D R  R+VH  I+  G+ +  ++ G A+VD+Y   G ++ A ++F+ +  +D
Sbjct: 328 LLACASVGDLRAGRAVHDQILGNGYKIT-LVNGTALVDLYTSYGSLDEARSLFDQIENRD 386

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
              W  LI GY++ G  +  +E+++ M+   ++   +  Y  ++ A + +GA     + H
Sbjct: 387 EGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAH 446

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + +  + +  D  +AT LV+MY + G ++ A  +F ++    ++ W  +I+ +  HG+  
Sbjct: 447 SDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHG 506

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            AL  +++M  EG  P  +TF+ +L ACSH+GL  +G++ F  +Q ++ + P++ HY C+
Sbjct: 507 LALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCI 566

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL  RAG L  A   I  MPV P+   W +LLGA RIH +++    A+ ++ ++D  + 
Sbjct: 567 IDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDP 626

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SN++A  G   G+  VR+    RG+KK  G S IEV +++  F  G+ +HP+++
Sbjct: 627 ASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQ 686

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I+ EL+ L+ K+K  GYVP+   VL DV E EKE +L  HSE+LAIAFG+I++ P + +
Sbjct: 687 EIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTL 746

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IF  LR+C DCH+  KFIS I  REIIVRDS+RFH F+DG CSCGDYW
Sbjct: 747 RIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 249/516 (48%), Gaps = 14/516 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +   L+ C++L   ++IH  +       +VF+   ++  Y + G    AR  FD +  ++
Sbjct: 30  YRDALRQCQDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARAAFDAIARKN 88

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SW +M++ Y Q+G+   ALD+   M L+    +P+   ++L  CA    +  G  IH 
Sbjct: 89  DYSWGSMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIKALEEGKAIHS 145

Query: 154 YIV-KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
            I    GL+ ++ + N+L+ MYAK G +  A R+F++M  R V SWN++IAAY QS    
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE 205

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   +  M    ++P + T  S+ S  + L      R +H  I  RG  + D+ + NA+
Sbjct: 206 EAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNAL 261

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           + MYA+   ++ A  +F+ LP +DV+SW+ +I  +A+  L  EAIE +  M +   + PN
Sbjct: 262 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKM-QLEGVRPN 320

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T+ S+L A + VG LR G  +H +++ N     +   T LVD+Y   G +D+A SLF 
Sbjct: 321 YYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD 380

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS 451
           Q+       W  +I  +   G     L  +R+M +    P   I +  +++AC+  G  +
Sbjct: 381 QIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFA 440

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +  R  H   E  G+         +V+++ R G+L  A      M  R D   W  L+  
Sbjct: 441 DA-RQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAG 498

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
              HG   L A+   +  E++         M  +YA
Sbjct: 499 YAKHGEHGL-ALGLYKEMELEGAEPSELTFMVVLYA 533


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 396/667 (59%), Gaps = 12/667 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y   G   +A+D +++F +T G+ PD +T   VL AC +L+   +G  +H  + K+
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMT-GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKI 251

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV +   LL MY +F     AR++F  M V+DS +WN MI GY Q G    ++ + 
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M ++G   D +++ S +  C +S ++  G  +H Y++  G E +    N LI+MYAK 
Sbjct: 312 MDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD    +D V+WNS+I  Y QS         F  M+    +PD +T V L 
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLL 429

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +QL D    R +H  +++ G F  ++IIGN+++D+YAK G ++    VF  +   D+
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFG-FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDI 488

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKI 355
           ISWNT+I   A +    +    FQM+ E     + P++ T + ILP  S +   RQG +I
Sbjct: 489 ISWNTVI---ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEI 545

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  + K+    +V +   L++MY KCG +++ + +F  +     V W A+IS  G++G+G
Sbjct: 546 HGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEG 605

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            KAL  F+ M   GV PD + F++ + ACSHSG+V EG R+F  M+ ++ ++P ++HY C
Sbjct: 606 KKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYAC 665

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VDL  R+G L  A  FI +MP++PDAS+WGALL ACR  GN  +    S ++ E++S++
Sbjct: 666 VVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDD 725

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            GYYVL+SNIYA +GKW+ V  VR+  + +GLKK PG S IE+  +V +F TG+++  +Y
Sbjct: 726 TGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQY 785

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +K+ D L  L   M   GYV D  F L DVEED+K  +L  HSERLAIAFG++++ P SP
Sbjct: 786 DKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSP 845

Query: 656 IQIFKNL 662
           + IF  L
Sbjct: 846 LLIFPTL 852



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 271/524 (51%), Gaps = 19/524 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           +Y       L+PD +TFP V+ +C  ++D   G  +H   +++GFE D+++  +L+ MY 
Sbjct: 108 YYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYS 167

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           RF   + AR +F++M  RDS SWN++ISGYC +G   +ALD+  + R+ G+  D  T++S
Sbjct: 168 RFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSS 227

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C     +  G+ +H  I K G+  ++ + N L++MY KF  +R A RVF +M  +D
Sbjct: 228 VLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKD 287

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            V+WN++I  Y Q      +   F  M   G  PD+L++ S      Q  D +  + VH 
Sbjct: 288 SVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHK 346

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +++  G F  D +  N ++DMYAK G + +A  VF+    KD ++WN+LI GY Q+G   
Sbjct: 347 YLIGSG-FECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK 405

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           E +E F+MM+   E  P+  T+V +L  +S +  + QG  IH  VIK     ++ +   L
Sbjct: 406 EGLESFKMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSL 463

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +D+Y KCG +DD + +F  +     + WN +I+                +M  EG+ PD 
Sbjct: 464 LDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDE 523

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T + +L  CS   +  +G+   H    + G + ++     +++++ + G L       +
Sbjct: 524 ATVLGILPMCSLLAVRRQGKE-IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 495 NMPVRPDASIWGALLGACRIHG----------NMELGAVASDRL 528
            M  + D   W AL+ A  ++G          +MEL  V  D +
Sbjct: 583 YMKEK-DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSV 625



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 222/451 (49%), Gaps = 6/451 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSG 95
            L + +N    + +H  ++  G    V  +  L+  Y +      +  +F  + P  +  
Sbjct: 28  TLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVY 87

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
            WN++I     +G   +AL    EMR + +  D  T  S++  CAR  ++  G ++H + 
Sbjct: 88  LWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           ++ G E +L++ N LI+MY++F  + +A  VF++M  RD VSWNS+I+ Y  +     A 
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDAL 207

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             +   +  G+ PD  T+ S+      L   +   +VHG I + G    DVIIGN ++ M
Sbjct: 208 DMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG-IAGDVIIGNGLLSM 266

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K   +  A  VF  + VKD ++WNT+I GYAQ G    ++++F  M+  +   P+  +
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDMLS 324

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             S + A    G L+ G  +H  +I +    D      L+DMY KCG +  A  +F    
Sbjct: 325 ITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK 384

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
              SV WN++I+ +   G   + L  F+ M  E  +PD +TFV LL+  S    +++G R
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQG-R 442

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             H    +FG +  L     ++D++ + G +
Sbjct: 443 GIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/732 (38%), Positives = 412/732 (56%), Gaps = 49/732 (6%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDF----YTFPPVLKACRNLVDGKKIHCSVLKL 57
           IS Y+R GR SEA+  F +    S +  +     Y      +  R L D       V   
Sbjct: 66  ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV--- 122

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
              W+V +       Y R      AR+LF+ MP RD  SWN ++SGY Q+G   +A  + 
Sbjct: 123 --SWNVMIKG-----YVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           D M     VS + +  A +         +L G   +  +V           N L+  + K
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSW---------NCLLGGFVK 226

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF-----------TTMQQAG 225
              +  A + FD M  RDVVSWN+II  Y Q+ +   A   F           T M    
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGY 286

Query: 226 IQPDLLTLV-SLTSIVAQLNDCRNSRSVHGFI------MRRGWF----MEDVIIGNAVVD 274
           IQ  ++     L   + + N+   +  + G++      M +  F      +V   N ++ 
Sbjct: 287 IQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMIT 346

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINPNQ 333
            YA+ G I+ A  +F+ +P +D +SW  +I GY+Q+G + EA+ +F +ME E   +N  +
Sbjct: 347 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLN--R 404

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            ++ S L   + V AL  G ++H R++K       FV   L+ MY KCG I++A  LF +
Sbjct: 405 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 464

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +     V WN +I+ +  HG G++AL FF  M  EG++PD  T V++L+ACSH+GLV +G
Sbjct: 465 MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 524

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
           ++YFH M +++G++P+ +HY CMVDL GRAG L  AHN ++NMP  PDA+IWG LLGA R
Sbjct: 525 RQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASR 584

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           +HGN EL   A+D++F ++ EN G YVL+SN+YA+ G+W  V ++R   RD+G+KK PG+
Sbjct: 585 VHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGY 644

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S IE+ NK   F  G+  HP+ ++I+  L +L  +MK  GYV   S VL DVEE+EKE +
Sbjct: 645 SWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERM 704

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           +  HSERLA+A+GI+      PI++ KNLRVC DCHN  K+++++T R II+RD+NRFHH
Sbjct: 705 VRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHH 764

Query: 694 FKDGICSCGDYW 705
           FKDG CSCGDYW
Sbjct: 765 FKDGSCSCGDYW 776



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 206/454 (45%), Gaps = 57/454 (12%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPI----------TVASIL-PVCA 140
           D   WN  IS Y ++G   EAL +   M R   VS + +           +A +L     
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 141 RSDNILSGLLIHLYIVKHGL-----------EFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
             D +   ++I  Y+    L           E ++   N +++ YA+ G +  A RVFD+
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDR 177

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M E++ VSWN++++AY Q++    A   F + +          LVS   ++      +  
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSREN-------WALVSWNCLLGGF--VKKK 228

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + V          + DV+  N ++  YA+ G I+ A  +F+  PV DV +W  +++GY Q
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQ 288

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH-ARVIKNCL-CFD 367
           N +  EA E+F  M E NE++ N     ++L  Y       QG ++  A+ + + + C +
Sbjct: 289 NRMVEEARELFDRMPERNEVSWN-----AMLAGYV------QGERVEMAKELFDVMPCRN 337

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V     ++  Y +CG+I +A +LF ++P+   V W A+I+ +   G   +AL  F  M  
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD-----LFGR 482
           EG R +  +F S L+ C+    +  G++  H    + G +      GC V      ++ +
Sbjct: 398 EGGRLNRSSFSSALSTCADVVALELGKQ-LHGRLVKGGYET-----GCFVGNALLLMYCK 451

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            G +  A++  + M  + D   W  ++     HG
Sbjct: 452 CGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG 484



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 144/341 (42%), Gaps = 52/341 (15%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D+   N  +  Y + G  + A  VF+ +P    +S+N +I+GY +NG    A  +F  M 
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           E + ++ N      ++  Y     L +  ++  R+ +     DV     ++  Y + G +
Sbjct: 118 ERDLVSWN-----VMIKGYVRNRNLGKARELFERMPER----DVCSWNTILSGYAQNGCV 168

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF---------------------- 422
           DDA  +F ++P  + V WNA++S +  + + ++A   F                      
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKK 228

Query: 423 -----RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
                RQ  D     D +++ +++T  + +G + E ++ F    +E  +      +  MV
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DESPVHDVFT-WTAMV 283

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSENV 536
             + +   +  A      MP R + S W A+L        +E+    +  LF+V    NV
Sbjct: 284 SGYIQNRMVEEARELFDRMPERNEVS-WNAMLAGYVQGERVEM----AKELFDVMPCRNV 338

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP-GWSSI 576
             +  M   YA  GK   + E ++L  D+  K+ P  W+++
Sbjct: 339 STWNTMITGYAQCGK---ISEAKNLF-DKMPKRDPVSWAAM 375


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/709 (38%), Positives = 389/709 (54%), Gaps = 95/709 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S + + G + EA   F Q  + + +  +     Y     ++  R L D K        
Sbjct: 159 MLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK-------- 210

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              +W++     L+  Y R    + AR LFD MPVRD  SWN MI+GY Q+G   EA  +
Sbjct: 211 --MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +E+        PI                                ++F    +++ + +
Sbjct: 269 FEEL--------PIR-------------------------------DVFAWTAMVSGFVQ 289

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            GM+  A R+F++M E++ VSWN++IA Y QS     A   F  M               
Sbjct: 290 NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS------------- 336

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                     RN+ S         W        N +V  YA+ G I+ A  +F+ +P +D
Sbjct: 337 ----------RNTSS---------W--------NTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            ISW  +I+GYAQ+G + EA+ +F  M+    I  N+      L + + + AL  G ++H
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLH 428

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            R++K            L+ MYGKCG I++A  +F  +     V WN +I+ +  HG G 
Sbjct: 429 GRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGK 488

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  M    ++PD +T V +L+ACSH+GLV +G  YF+ M + +GI  + KHY CM
Sbjct: 489 EALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCM 547

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG L  A N +++MP  PDA+ WGALLGA RIHG+ ELG  A++++FE++ +N 
Sbjct: 548 IDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNS 607

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YVL+SN+YA  G+W  V E+RS  RD+G+KK PG+S +E+ NK  IF  G+ +HP+ E
Sbjct: 608 GMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAE 667

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY  L  L  ++K  G+V     VL DVEE+EKEH+L  HSE+LA+AFGI+S PP  PI
Sbjct: 668 RIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPI 727

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCHN  K IS+IT+R+IIVRDSNRFHHF +G CSCGDYW
Sbjct: 728 RVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 195/450 (43%), Gaps = 57/450 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV----CARSDNILSGLLIH 152
           WN  IS Y + G    AL + + MR          ++  L      CAR           
Sbjct: 63  WNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK---------- 112

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             + +   + +L   N +++ Y K G +  A  +F+QM E+DVVSWN++++ + Q+    
Sbjct: 113 --VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH----------------GFI 256
            A   F  M    +  + ++   L S   Q     ++R +                 G++
Sbjct: 171 EARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 257 MR------RGWF----MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            +      R  F    + D I  N ++  YA+ G+++ A  +FE LP++DV +W  +++G
Sbjct: 227 RKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSG 286

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           + QNG+  EA  +F+ M E NE++ N     +++  Y       Q I+    +       
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVSWN-----AMIAGYVQ----SQQIEKARELFDQMPSR 337

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +      +V  Y +CG ID A  LF ++P+   + W A+IS +   GQ ++AL+ F +M 
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            +G   +       L++C+    +  G++  H    + G +        ++ ++G+ G +
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             A +  +++    D   W  ++     HG
Sbjct: 457 EEAFDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 171/386 (44%), Gaps = 62/386 (16%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I+ Y + G    AL VF+ M  R  V++N++I+ Y  +N    A   F  M      
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------ 117

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD                                   D+I  N ++  Y K G +++A A
Sbjct: 118 PD----------------------------------RDLISWNVMLSGYVKNGNLSAARA 143

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  +P KDV+SWN +++G+AQNG   EA ++F  M   NEI+ N      +L AY   G
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWN-----GLLSAYVQNG 198

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            +        R+  + + +++    CL+  Y +  R+DDA SLF ++P    + WN +I+
Sbjct: 199 RIEDA----RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMIT 254

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  +G     L+  R++ +E    D   + ++++    +G++ E  R F  M E+  + 
Sbjct: 255 GYAQNG----LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
                +  M+  + ++  +  A      MP R + S W  ++      GN++   +  D 
Sbjct: 311 -----WNAMIAGYVQSQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWE 553
           + + D   + +  ++S  YA  G+ E
Sbjct: 365 MPQRDC--ISWAAMISG-YAQSGQSE 387


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/682 (36%), Positives = 400/682 (58%), Gaps = 9/682 (1%)

Query: 29  PDFYTFPPVLKACRN---LVDGKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGL-ANVAR 83
           P+ Y F  +L++C N      G  I   +LK G F+  V V  +L+ M+ + GL    AR
Sbjct: 143 PNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSAR 202

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD M  ++  +W  MI+ Y Q G   +A+D+   + +   + D  T+ S+L  C   +
Sbjct: 203 MVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELE 262

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
               G  +H ++++ GL  ++FV   L++MYAK   + ++ ++F+ M+  +V+SW ++I+
Sbjct: 263 FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALIS 322

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y QS     A   F  M    + P+  T  S+    A L D    + +HG  ++ G   
Sbjct: 323 GYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLST 382

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            + + GN++++MYA+ G +  A   F  L  K++IS+NT       N  A ++ E F   
Sbjct: 383 INCV-GNSLINMYARSGTMECARKAFNILFEKNLISYNTAADA---NAKALDSDESFNHE 438

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            E   +  +  TY  +L   + +G + +G +IHA ++K+    ++ +   L+ MY KCG 
Sbjct: 439 VEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGN 498

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
            + A+ +F  +   + + W +IIS    HG   KAL  F +ML+ GV+P+ +T++++L+A
Sbjct: 499 KEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSA 558

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH GL+ E  ++F+ M     I P ++HY CMVDL GR+G L  A  FI +MP   DA 
Sbjct: 559 CSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           +W   LG+CR+H N +LG  A+ ++ E +  +   Y+L+SN+YA+ G+W+ V  +R   +
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMK 678

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            + L K  G+S IEV+N+V  F+ G+ +HP+  KIYDEL  L  K+K+LGY+P+  FVL 
Sbjct: 679 QKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLH 738

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DVE+++KE  L  HSE++A+A+ +IS+P   PI++FKNLRVCGDCH   K+IS +T REI
Sbjct: 739 DVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREI 798

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           +VRD+NRFHH KDG CSC DYW
Sbjct: 799 VVRDANRFHHIKDGKCSCNDYW 820



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 180/338 (53%), Gaps = 20/338 (5%)

Query: 121 RLEGVSMDPITVASIL-PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           RL+  +  P+  +S+L   C RS N+  G L+H  ++  GL  +  + N+LI +Y+K G 
Sbjct: 30  RLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGD 89

Query: 180 MRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG---IQPDLLTLV 234
             +AL +F  M   +RD+VSW++II+ +  ++    A   F  M Q     I P+     
Sbjct: 90  WENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFT 149

Query: 235 SLTSIVAQLNDCRN------SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-INSACA 287
           +L      L  C N        ++  F+++ G+F   V +G A++DM+ K G+ I SA  
Sbjct: 150 AL------LRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARM 203

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF+ +  K++++W  +IT Y+Q GL  +A+++F  +   +E  P++ T  S+L A   + 
Sbjct: 204 VFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRL-LVSEYTPDKFTLTSLLSACVELE 262

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
               G ++H+ VI++ L  DVFV   LVDMY K   ++++  +F  +   + + W A+IS
Sbjct: 263 FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALIS 322

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            +    Q  +A+  F  ML   V P+  TF S+L AC+
Sbjct: 323 GYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--R 396
           +L A    G L  G  +H ++I + L  D  +   L+ +Y KCG  ++A+S+F  +   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG---VRPDHITFVSLLTACSHSGLVSEG 453
              V W+AIISC   +    +AL  F  ML      + P+   F +LL +CS+    + G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
              F  + +      H+     ++D+F + G
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGG 195


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/712 (38%), Positives = 407/712 (57%), Gaps = 16/712 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEW 61
           I+   + G L  A++ F +  L  G+RP   T    L  C  +   + IH  V + G E 
Sbjct: 200 IAANAQSGDLGIALELFQRMQL-EGVRPARITLVIALTVCATIRQAQAIHFIVRESGLEQ 258

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            + V+ +L   Y R G    A+++FD    RD  SWNAM+  Y Q G+  EA  +   M 
Sbjct: 259 TLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EG+S   +T+ +    C+   ++  G +IH   ++ GL+ ++ + N L++MY + G   
Sbjct: 319 HEGISPSKVTLVNASTGCS---SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +F ++   + VSWN++IA   Q      A   F  MQ  G+ P   T ++L   VA
Sbjct: 376 EARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVA 434

Query: 242 ----QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD- 296
               +       R +H  I+  G+  E  I G AVV MYA  G I+ A A F+   ++D 
Sbjct: 435 SNPEEARAMAEGRKLHSRIVSCGYASEPAI-GTAVVKMYASCGAIDEAAASFQRGAMEDR 493

Query: 297 --VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
             V+SWN +I+  +Q+G    A+  F+ M+  + + PNQ T V++L A +   AL +G  
Sbjct: 494 HDVVSWNAIISSLSQHGHGKRALGFFRRMD-LHGVAPNQITCVAVLDACAGAAALTEGEI 552

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           +H  +  + +  ++FVAT L  MYG+CG ++ A  +F +V      V +NA+I+ +  +G
Sbjct: 553 VHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F +M  EG RPD  +FVS+L+ACSH GL  EG   F  M++ +GI P   HY
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHY 672

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            C VD+ GRAG L  A   I+ M V+P   +W  LLGACR + +++ G +A+  + E+D 
Sbjct: 673 ACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDP 732

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
            +   YV++SNI A  GKW+   EVR+    RGL+K  G S IE+ ++V  F  G+R+HP
Sbjct: 733 GDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHP 792

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + E+IY EL  L A+++ +GYVPD   VL+ V+E EKE +L  HSERLAIA G++SS   
Sbjct: 793 RSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD 852

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + +++ KNLRVC DCHN TKFIS+I  +EI+VRD++RFHHF DG CSCGDYW
Sbjct: 853 T-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 182/521 (34%), Positives = 275/521 (52%), Gaps = 22/521 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y   G+   A+  F++     G+R D  TF  VLKAC  L D   G+ IH  +++ 
Sbjct: 99  IITAYTEHGQAKRAIGMFHRMQ-QEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVES 157

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +    +A  LLH+Y   G    A  LF+ M  RD  SWNA I+   QSG+   AL++ 
Sbjct: 158 GLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELF 216

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+LEGV    IT+   L VCA    I     IH  + + GLE  L VS  L + YA+ 
Sbjct: 217 QRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARL 273

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD+  ERDVVSWN+++ AY Q      A   F  M   GI P  +TLV+ +
Sbjct: 274 GHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNAS 333

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + L   R  R +HG  + +G    D+++GNA++DMY + G    A  +F+ +P  + 
Sbjct: 334 TGCSSL---RFGRMIHGCALEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NA 388

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS----HVGALRQGI 353
           +SWNT+I G +Q G    A+E+FQ M +   + P + TY+++L A +       A+ +G 
Sbjct: 389 VSWNTMIAGSSQKGQMKRAVELFQRM-QLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 410
           K+H+R++      +  + T +V MY  CG ID+A + F +     R   V WNAIIS   
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG G +AL FFR+M   GV P+ IT V++L AC+ +  ++EG+   H      G++ +L
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGE-IVHDHLRHSGMESNL 566

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
                +  ++GR G L  A    + + V  D  I+ A++ A
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/483 (31%), Positives = 256/483 (53%), Gaps = 21/483 (4%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R L  G++IH  ++ LG E ++     LL +Y +        ++F  + VRD  SW  +I
Sbjct: 43  RLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTII 100

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           + Y + G A  A+ +   M+ EGV  D +T  ++L  CAR  ++  G  IH +IV+ GL+
Sbjct: 101 TAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLK 160

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
               ++N L+++Y   G +  A+ +F++ MERD+VSWN+ IAA  QS D   A   F  M
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFEK-MERDLVSWNAAIAANAQSGDLGIALELFQRM 219

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q  G++P  +TLV   ++ A +   R ++++H FI+R     + +++  A+   YA+LG 
Sbjct: 220 QLEGVRPARITLVIALTVCATI---RQAQAIH-FIVRESGLEQTLVVSTALASAYARLGH 275

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSIL 340
           +  A  VF+    +DV+SWN ++  YAQ+G  SEA  +F +M+ E   I+P++   V+++
Sbjct: 276 LYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE--GISPSK---VTLV 330

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A +   +LR G  IH   ++  L  D+ +   L+DMY +CG  ++A  LF ++P  ++V
Sbjct: 331 NASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAV 389

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS----HSGLVSEGQRY 456
            WN +I+     GQ  +A+  F++M  EG+ P   T+++LL A +     +  ++EG R 
Sbjct: 390 SWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEG-RK 448

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN--MPVRPDASIWGALLGACRI 514
            H      G          +V ++   G +  A    Q   M  R D   W A++ +   
Sbjct: 449 LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQ 508

Query: 515 HGN 517
           HG+
Sbjct: 509 HGH 511



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           V +L A      L QG +IHAR++   L  +  +   L+ +Y KC  + D   +F ++  
Sbjct: 33  VRLLRAAGDDRLLSQGRRIHARIVS--LGLEEELGNHLLRLYLKCESLGDVEEVFSRLEV 90

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
                W  II+ +  HGQ  +A+  F +M  EGVR D +TF+++L AC+  G +S+G R 
Sbjct: 91  RDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RS 149

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    E G+K        ++ ++G  G +  A    + M    D   W A + A    G
Sbjct: 150 IHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME--RDLVSWNAAIAANAQSG 207

Query: 517 NM 518
           ++
Sbjct: 208 DL 209


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 388/709 (54%), Gaps = 95/709 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S + + G + EA   F Q  + + +  +     Y     ++  R L D K        
Sbjct: 159 MLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK-------- 210

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              +W++     L+  Y R    + AR LFD MPVRD  SWN MI+GY Q+G   EA  +
Sbjct: 211 --MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +E+        PI                                ++F    +++ + +
Sbjct: 269 FEEL--------PIR-------------------------------DVFAWTAMVSGFVQ 289

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            GM+  A R+F++M E++ VSWN++IA Y QS     A   F  M               
Sbjct: 290 NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS------------- 336

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                     RN+ S         W        N +V  YA+ G I+ A  +F+ +P +D
Sbjct: 337 ----------RNTSS---------W--------NTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            ISW  +I+GYAQ+G + EA+ +F  M+    I  N+      L + + + AL  G ++H
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLH 428

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            R++K            L+ MYGKCG I++A  +F  +     V WN +I+ +  HG G 
Sbjct: 429 GRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGK 488

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  M    ++PD +T V +L+ACSH+G V +G  YF+ M + +GI  + KHY CM
Sbjct: 489 EALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCM 547

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG L  A N +++MP  PDA+ WGALLGA RIHG+ ELG  A++++FE++ +N 
Sbjct: 548 IDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNS 607

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YVL+SN+YA  G+W  V E+RS  RD+G+KK PG+S +E+ NK  IF  G+ +HP+ E
Sbjct: 608 GMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAE 667

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY  L  L  ++K  G+V     VL DVEE+EKEH+L  HSE+LA+AFGI+S PP  PI
Sbjct: 668 RIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPI 727

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCHN  K IS+IT+R+IIVRDSNRFHHF +G CSCGDYW
Sbjct: 728 RVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 195/450 (43%), Gaps = 57/450 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV----CARSDNILSGLLIH 152
           WN  IS Y + G    AL + + MR          ++  L      CAR           
Sbjct: 63  WNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK---------- 112

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             + +   + +L   N +++ Y K G +  A  +F+QM E+DVVSWN++++ + Q+    
Sbjct: 113 --VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH----------------GFI 256
            A   F  M    +  + ++   L S   Q     ++R +                 G++
Sbjct: 171 EARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 257 MR------RGWF----MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            +      R  F    + D I  N ++  YA+ G+++ A  +FE LP++DV +W  +++G
Sbjct: 227 RKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSG 286

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           + QNG+  EA  +F+ M E NE++ N     +++  Y       Q I+    +       
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVSWN-----AMIAGYVQ----SQQIEKARELFDQMPSR 337

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +      +V  Y +CG ID A  LF ++P+   + W A+IS +   GQ ++AL+ F +M 
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            +G   +       L++C+    +  G++  H    + G +        ++ ++G+ G +
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQ-LHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             A +  +++    D   W  ++     HG
Sbjct: 457 EEAFDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 171/386 (44%), Gaps = 62/386 (16%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I+ Y + G    AL VF+ M  R  V++N++I+ Y  +N    A   F  M      
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------ 117

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD                                   D+I  N ++  Y K G +++A A
Sbjct: 118 PD----------------------------------RDLISWNVMLSGYVKNGNLSAARA 143

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F  +P KDV+SWN +++G+AQNG   EA ++F  M   NEI+ N      +L AY   G
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWN-----GLLSAYVQNG 198

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            +        R+  + + +++    CL+  Y +  R+DDA SLF ++P    + WN +I+
Sbjct: 199 RIEDA----RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMIT 254

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  +G     L+  R++ +E    D   + ++++    +G++ E  R F  M E+  + 
Sbjct: 255 GYAQNG----LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
                +  M+  + ++  +  A      MP R + S W  ++      GN++   +  D 
Sbjct: 311 -----WNAMIAGYVQSQQIEKARELFDQMPSR-NTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWE 553
           + + D   + +  ++S  YA  G+ E
Sbjct: 365 MPQRDC--ISWAAMISG-YAQSGQSE 387


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/644 (38%), Positives = 385/644 (59%), Gaps = 6/644 (0%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMR 121
            +++ L   Y R G    A       P   S   +WNA+++ + +  +  EAL +   + 
Sbjct: 37  ILSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALP 96

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
                 D  T    L  CAR  ++ +G ++       G   ++FV ++++N+YAK G M 
Sbjct: 97  -PAARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMD 155

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A++VFD+M +RD V+W++++  +  +  P+ A   +  M++ G++ D + +V +    A
Sbjct: 156 DAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACA 215

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
              D R   SVHG+++R    M DV+I  ++VDMYAK G+ + A  VFE +P ++ +SW+
Sbjct: 216 ATGDARMGASVHGYLLRHAMQM-DVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWS 274

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            LI+  AQ G A EA+ +F+MM+  + ++PN G  V  L A S +G L+ G  IH  +++
Sbjct: 275 ALISQLAQYGNADEALGLFRMMQ-VSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILR 333

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
             L  D  V T ++DMY KCG +  A  LF +V     + WN +I+C G HG+G  AL+ 
Sbjct: 334 T-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSL 392

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F++M    VRPDH TF SLL+A SHSGLV EG+ +F+ M  E+GI+P  KH  C+VDL  
Sbjct: 393 FQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLA 452

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           R+G +  A+  + ++  +P  SI  ALL  C  +  +ELG   ++++ E+   +VG   L
Sbjct: 453 RSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLAL 512

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN+YA    W  V EVR L +D G KK PG SSIE+   +  F   +++HP++ +I   
Sbjct: 513 VSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQM 572

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           +  L ++M+ +GY+P   FV  D+EE  KE +L+ HSERLA AFG++++ P + + + KN
Sbjct: 573 VMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKN 632

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCGDCH+  K++S+I +REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 633 LRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 218/399 (54%), Gaps = 19/399 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ + R     EA+  F    L    RPD  TF   L AC  L D   G+ +       
Sbjct: 75  LLAAHSRGASPHEALRVFR--ALPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGA 132

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  D+FV +S+L++Y + G  + A K+FD M  RD  +W+ M++G+  +G  V+A+++ 
Sbjct: 133 GYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMY 192

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR +G+  D + +  ++  CA + +   G  +H Y+++H ++ ++ +S +L++MYAK 
Sbjct: 193 MRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKN 252

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G+   A RVF+ M  R+ VSW+++I+   Q  +   A G F  MQ +G+ P+   +V   
Sbjct: 253 GLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGAL 312

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L   +  +S+HGFI+R      D ++G AV+DMY+K G ++SA  +F+ +  +D+
Sbjct: 313 LACSDLGLLKLGKSIHGFILRT--LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDL 370

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN +I     +G   +A+ +FQ M+  NE+ P+  T+ S+L A SH G + +G     
Sbjct: 371 ISWNVMIACCGAHGRGRDALSLFQEMKR-NEVRPDHATFASLLSALSHSGLVEEG----- 424

Query: 358 RVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAMSL 390
           +   NC+  +  +        C+VD+  + G +++A  L
Sbjct: 425 KFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGL 463


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/704 (37%), Positives = 401/704 (56%), Gaps = 36/704 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           +++ C +L   K+ H  +++ G   D + A+ L  M      A++  ARK+FD++P  +S
Sbjct: 36  LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNS 95

Query: 95  GSWNAMISGYCQSGNAVEAL-DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
            +WN +I  Y    + V ++   LD +       +  T   ++   A   ++  G  +H 
Sbjct: 96  FAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 155

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             VK  +  ++FV+N+LI+ Y   G +  A +VF  + E+DVVSWNS+I  + Q   P  
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M+   ++   +T+V + S  A++ +    R V  +I        ++ + NA++
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAML 274

Query: 274 DMYAKLGIINSACAVFEGL-------------------------------PVKDVISWNT 302
           DMY K G I  A  +F+ +                               P KD+++WN 
Sbjct: 275 DMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNA 334

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI+ Y QNG  +EA+ VF  ++    +  NQ T VS L A + VGAL  G  IH+ + K+
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            +  +  V + L+ MY KCG ++ +  +F  V +     W+A+I    +HG G++A++ F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +M +  V+P+ +TF ++  ACSH+GLV E +  FH M+  +GI P  KHY C+VD+ GR
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           +G+L  A  FI+ MP+ P  S+WGALLGAC+IH N+ L  +A  RL E++  N G +VL+
Sbjct: 515 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLL 574

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SNIYA +GKWE V E+R   R  GLKK PG SSIE++  +  F +G+  HP  EK+Y +L
Sbjct: 575 SNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 634

Query: 603 RNLTAKMKSLGYVPDKSFVLQDVEEDE-KEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
             +  K+KS GY P+ S VLQ +EE+E KE  L  HSE+LAI +G+IS+     I++ KN
Sbjct: 635 HEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKN 694

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCGDCH+  K ISQ+ +REIIVRD  RFHHF++G CSC D+W
Sbjct: 695 LRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 15/214 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS Y + G+ +EA+  F++  L   ++ +  T    L AC     L  G+ IH  + K 
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +  V ++L+HMY + G    +R++F+ +  RD   W+AMI G    G   EA+D+ 
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN------LI 171
            +M+   V  + +T  ++   C+      +GL+     + H +E N  +         ++
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSH-----TGLVDEAESLFHQMESNYGIVPEEKHYACIV 509

Query: 172 NMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           ++  + G +  A++  + M +      W +++ A
Sbjct: 510 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/710 (38%), Positives = 409/710 (57%), Gaps = 9/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCF-YQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLK 56
           MI+ Y+R G   E++ CF + F +   +     T   +L  C    NL  G+ IH  VLK
Sbjct: 203 MIAAYIRNGLCKESLRCFSWMFRVHKEINST--TLSTMLAGCGSVDNLKWGRGIHSLVLK 260

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G+  +V  + +L+ MY   G    A  +F  M  +D  SWN+M++ Y Q GN ++AL +
Sbjct: 261 FGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKL 320

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           L  M       + +T  S L  C+  +    G ++H  ++  GL  N+ V N L+ +YAK
Sbjct: 321 LATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAK 380

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G+M  A +VF  M +RD V+WN++I  +  S +P  A   F  M++ G+  + +T+ ++
Sbjct: 381 SGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNV 440

Query: 237 TSIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                  ND   +   +H FI+  G F  D  + N+++ MYAK G +NS+  +F+ L  K
Sbjct: 441 LGACLAPNDLLEHGMPIHAFIILTG-FQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSK 499

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +  +WN ++   A +G   EA++    M     +N ++ ++   L A + +  L +G ++
Sbjct: 500 NASAWNAMMAANAHHGHMEEALKFLLEMRRAG-VNVDEFSFSECLAAAAKLAILEEGQQL 558

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   +K     + FVA+  +DMYGKCG IDD + +  +    S + WN + S    HG  
Sbjct: 559 HGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFF 618

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           +KA   F +M++ GV+PDH+TFVSLL+ACSH G+V EG  Y+  M +EFGI   + H  C
Sbjct: 619 EKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVC 678

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL GR+G    A  FI+ MPV P   +W +LL AC+ HGN+ELG  A + L ++D  +
Sbjct: 679 IIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSD 738

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL SNI A  GKWE V+++R       +KK P  S +++ NK+ +F  G+ +HP+ 
Sbjct: 739 DSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQA 798

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
            +IY +L  L   +K  GY+PD S+ LQD +E++KEH L +HSERLA+A+G+ISSP  S 
Sbjct: 799 SEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGST 858

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++IFKNLRVCGDCH+  KF S I  R+I++RD  RFH F  G CSC DYW
Sbjct: 859 LKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/522 (30%), Positives = 272/522 (52%), Gaps = 8/522 (1%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLKL 57
           +S +VR G   E++  F+      G++P       ++ AC      L++G ++H  ++K+
Sbjct: 1   MSGFVRAGSYRESMR-FFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKV 59

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  SL+H+Y  +GLA  A K+F +M  ++  SW A++  Y   G     ++I 
Sbjct: 60  GLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR EG+S +  T++S++  C   +N L G  +  +++K+GLE N+ V+N+LI+M+  F
Sbjct: 120 RRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYF 179

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF  M E D +SWNS+IAAY ++     +   F+ M +   + +  TL ++ 
Sbjct: 180 GSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTML 239

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +    +++ +  R +H  +++ GW   +V   N ++ MY+  G    A  VF+G+  KD+
Sbjct: 240 AGCGSVDNLKWGRGIHSLVLKFGW-NSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDM 298

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN+++  YAQ+G   +A+++   M        N  T+ S L A S      +G  +HA
Sbjct: 299 ISWNSMMACYAQDGNCLDALKLLATMFYMRR-GANYVTFTSALAACSDPEFATEGKILHA 357

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VI   L  +V V   LV +Y K G + +A  +F  +P+   V WNA+I  H    + D+
Sbjct: 358 LVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDE 417

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F+ M +EGV  ++IT  ++L AC     + E     H      G +        ++
Sbjct: 418 ALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLI 477

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            ++ + G L  ++N    +  + +AS W A++ A   HG+ME
Sbjct: 478 TMYAKCGDLNSSNNIFDRLTSK-NASAWNAMMAANAHHGHME 518


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/674 (38%), Positives = 390/674 (57%), Gaps = 8/674 (1%)

Query: 38  LKAC-----RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           LK C     ++L   K+ HC +L+LG   D ++   LL     F     A  +F   P  
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHP 64

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS-GLLI 151
           +   +N +I G   +    +A+ +   MR  G + D  T   +L  C R  +    GL +
Sbjct: 65  NIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSL 124

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H  ++K G ++++FV   L+ +Y+K G +  A +VFD++ E++VVSW +II  Y +S   
Sbjct: 125 HSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCF 184

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A G F  + + G++PD  TLV +    +++ D  + R + G+ MR    + +V +  +
Sbjct: 185 GEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGY-MRESGSVGNVFVATS 243

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +VDMYAK G +  A  VF+G+  KDV+ W+ LI GYA NG+  EA++VF  M+  N + P
Sbjct: 244 LVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQREN-VRP 302

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +    V +  A S +GAL  G      +  +    +  + T L+D Y KCG +  A  +F
Sbjct: 303 DCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF 362

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             + R   V +NA+IS   + G    A   F QM+  G++PD  TFV LL  C+H+GLV 
Sbjct: 363 KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD 422

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G RYF  M   F + P ++HYGCMVDL  RAG L  A + I++MP+  ++ +WGALLG 
Sbjct: 423 DGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGG 482

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CR+H + +L      +L E++  N G+YVL+SNIY+   +W+  +++RS    +G++K P
Sbjct: 483 CRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLP 542

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S +EV+  V  F  G+ +HP   KIY++L +L   ++  GY P   FVL DVEE+EKE
Sbjct: 543 GCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKE 602

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
           + L  HSE+LA+AF +IS+  K  I++ KNLRVCGDCH   K +S++T REIIVRD+NRF
Sbjct: 603 YFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRF 662

Query: 692 HHFKDGICSCGDYW 705
           HHF +G CSC DYW
Sbjct: 663 HHFTEGSCSCRDYW 676



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 226/434 (52%), Gaps = 21/434 (4%)

Query: 26  GLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           G  PD +TFP VLKAC  L      G  +H  V+K GF+WDVFV   L+ +Y + G    
Sbjct: 96  GFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTD 155

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           ARK+FD++P ++  SW A+I GY +SG   EAL +   +   G+  D  T+  IL  C+R
Sbjct: 156 ARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSR 215

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             ++ SG  I  Y+ + G   N+FV+ +L++MYAK G M  A RVFD M+E+DVV W+++
Sbjct: 216 VGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSAL 275

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y  +  P  A   F  MQ+  ++PD   +V + S  ++L          G +M    
Sbjct: 276 IQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARG-LMDGDE 334

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F+ + ++G A++D YAK G +  A  VF+G+  KD + +N +I+G A  G    A  VF 
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT-------CL 374
            M +   + P+  T+V +L   +H G +  G +  + +        VF  T       C+
Sbjct: 395 QMVKVG-MQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSS------VFSVTPTIEHYGCM 447

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRP 432
           VD+  + G + +A  L   +P  ++S+ W A++    +H     A +  +Q+++ E    
Sbjct: 448 VDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNS 507

Query: 433 DHITFVSLLTACSH 446
            H   +S + + SH
Sbjct: 508 GHYVLLSNIYSASH 521



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 158/356 (44%), Gaps = 23/356 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +I  Y+  G   EA+  F    L  GLRPD +T   +L AC    +L  G+ I   + + 
Sbjct: 174 IICGYIESGCFGEALGLFRGL-LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES 232

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +VFVA SL+ MY + G    AR++FD M  +D   W+A+I GY  +G   EALD+ 
Sbjct: 233 GSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVF 292

Query: 118 DEMRLEGVSMDPITVASILPVCAR-----SDNILSGLLIHLYIVKHGLEF--NLFVSNNL 170
            EM+ E V  D   +  +   C+R       N   GL+        G EF  N  +   L
Sbjct: 293 FEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLM-------DGDEFLSNPVLGTAL 345

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+ YAK G +  A  VF  M  +D V +N++I+          A G F  M + G+QPD 
Sbjct: 346 IDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDG 405

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T V L           +       +         +     +VD+ A+ G++  A  +  
Sbjct: 406 NTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIR 465

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYS 344
            +P++ + I W  L+ G     L  +      ++++  E+ P N G YV +   YS
Sbjct: 466 SMPMEANSIVWGALLGGCR---LHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYS 518


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/721 (37%), Positives = 397/721 (55%), Gaps = 78/721 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDE 119
           D+    +L+  +   G +N+AR++F   P  +RD+  +NAMI+GY  + +   A+++  +
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 120 MRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +   G   D  T  S+L   A   ++      IH  +VK G  F   V N L++++ K  
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 179 M---------MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA--------------- 214
                     M  A ++FD+M ERD +SW ++IA Y ++ +   A               
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 215 ---------HGFF-------TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
                    HGFF         M   GIQ D  T  S+ S  A      + + VH +I+R
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 259 ---RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY-------- 307
              R      + + NA+  +Y K G ++ A  VF  +PVKD++SWN +++GY        
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379

Query: 308 -----------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
                                  AQNG   E++++F  M+      P    +   + A +
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS-EGFEPCDYAFAGAIIACA 438

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            + AL  G ++HA++++      +     L+ MY KCG ++ A  LF  +P   SV WNA
Sbjct: 439 WLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNA 498

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+  G HG G +AL  F  ML E + PD ITF+++L+ CSH+GLV EG RYF  M   +
Sbjct: 499 MIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLY 558

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P   HY  M+DL  RAG    A + I+ MPV P   IW ALL  CRIHGNM+LG  A
Sbjct: 559 GICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQA 618

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           ++RLFE+  ++ G YVL+SN+YA VG+W+ V +VR L RD+G+KK PG S IEV NKV +
Sbjct: 619 AERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHV 678

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F   +  HP+ + +Y+ L  L  KM+ LGY+PD  FVL D+E ++KE++L++HSE+LA+ 
Sbjct: 679 FLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVG 738

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG++  P  + +++FKNLR+CGDCHN  KF+S++ EREI+VRD  RFHHFK+G CSCG+Y
Sbjct: 739 FGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNY 798

Query: 705 W 705
           W
Sbjct: 799 W 799



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 149/546 (27%), Positives = 249/546 (45%), Gaps = 95/546 (17%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK----IHCSVLKLGFEWDVFVAASL 69
           A++ F    L +G RPD +TF  VL A   +V+ +K    IHC+V+K G  +   V  +L
Sbjct: 133 AIELFRDL-LRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNAL 191

Query: 70  LHMYCRFGLAN---------VARKLFDDMPVRDSGSW----------------------- 97
           L ++ +   +           ARKLFD+M  RD  SW                       
Sbjct: 192 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 251

Query: 98  --------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
                   NAMISGY   G  +EAL++  +M L G+  D  T  S+L  CA +   L G 
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGK 311

Query: 150 LIHLYIVKH----GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
            +H YI++      L+F+L V+N L  +Y K G +  A +VF+QM  +D+VSWN+I++ Y
Sbjct: 312 QVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGY 371

Query: 206 EQSNDPITAHGF-------------------------------FTTMQQAGIQPDLLTLV 234
             +     A  F                               F  M+  G +P      
Sbjct: 372 VNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFA 431

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
                 A L    + R +H  ++R G F   +  GNA++ MYAK G++ +A  +F  +P 
Sbjct: 432 GAIIACAWLAALMHGRQLHAQLVRLG-FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY 490

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG-- 352
            D +SWN +I    Q+G  ++A+E+F++M +  +I P++ T++++L   SH G + +G  
Sbjct: 491 LDSVSWNAMIAALGQHGHGAQALELFELMLK-EDILPDRITFLTVLSTCSHAGLVEEGHR 549

Query: 353 -IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHG 410
             K  + +   C   D +    ++D+  + G+  +A  +   +P     P W A+++   
Sbjct: 550 YFKSMSGLYGICPGEDHYAR--MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCR 607

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           IHG  D  +    ++ +  + P H  T+V L    +  G   +  +   +M+++ G+K  
Sbjct: 608 IHGNMDLGIQAAERLFE--LMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDK-GVK-- 662

Query: 470 LKHYGC 475
            K  GC
Sbjct: 663 -KEPGC 667



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 195/489 (39%), Gaps = 115/489 (23%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------ 192
           +H +++  G +   ++ N LI++Y K   +  A  +FD++ +                  
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96

Query: 193 ---------------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                          RD V +N++I  Y  +ND   A   F  + + G +PD  T  S+ 
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156

Query: 238 SIVA---------QLNDCRNSRSVHGFIMR---------------------------RGW 261
             +A         Q   C   +S  GF+                             R  
Sbjct: 157 GALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKL 216

Query: 262 FME----DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           F E    D +    ++  Y + G +++A    +G+  K V++WN +I+GY  +G   EA+
Sbjct: 217 FDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEAL 276

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN----CLCFDVFVATC 373
           E+F+ M     I  ++ TY S+L A ++ G    G ++HA +++      L F + V   
Sbjct: 277 EMFRKMYLLG-IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNA 335

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH------------------------ 409
           L  +Y KCG++D+A  +F Q+P    V WNAI+S +                        
Sbjct: 336 LATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTW 395

Query: 410 -------GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
                    +G G+++L  F +M  EG  P    F   + AC+    +  G R  H    
Sbjct: 396 TVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHG-RQLHAQLV 454

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
             G    L     ++ ++ + G +  AH     MP   D+  W A++ A   HG+   GA
Sbjct: 455 RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAALGQHGH---GA 510

Query: 523 VASDRLFEV 531
            A + LFE+
Sbjct: 511 QALE-LFEL 518



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 175/395 (44%), Gaps = 60/395 (15%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G   EA++ F +  L  G++ D +T+  VL AC N    + GK++H  +L+ 
Sbjct: 262 MISGYVHHGFFLEALEMFRKMYLL-GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT 320

Query: 58  ----GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY--------- 104
                 ++ + V  +L  +Y + G  + AR++F+ MPV+D  SWNA++SGY         
Sbjct: 321 EPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEA 380

Query: 105 ----------------------CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                  Q+G   E+L + + M+ EG        A  +  CA  
Sbjct: 381 KSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWL 440

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             ++ G  +H  +V+ G + +L   N LI MYAK G++  A  +F  M   D VSWN++I
Sbjct: 441 AALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMI 500

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL----NDCRNSRSVHGFIMR 258
           AA  Q      A   F  M +  I PD +T +++ S  +         R  +S+ G    
Sbjct: 501 AALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSG---- 556

Query: 259 RGWFMEDVIIGN----AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLA 313
               +  +  G      ++D+  + G  + A  + E +PV+     W  L+ G   +G  
Sbjct: 557 ----LYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNM 612

Query: 314 SEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVG 347
              I   Q  E   E+ P   GTYV +   Y+ VG
Sbjct: 613 DLGI---QAAERLFELMPQHDGTYVLLSNMYATVG 644


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/736 (37%), Positives = 397/736 (53%), Gaps = 86/736 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---------CRNLVDGKKIH 51
           M++ Y   GRL +A+  F         RPD +++  +L A          R L D   + 
Sbjct: 144 MLAGYAANGRLPQALSFFRSIP-----RPDSFSYNTLLHALGVSSSLADVRALFDEMPVK 198

Query: 52  CSV---------------------LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
            SV                       L  E D      +L  Y R G    AR+LFD   
Sbjct: 199 DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRT 258

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL- 149
             D+ SWNA+++GY Q     EA  + ++M       D ++  +++   AR  ++     
Sbjct: 259 EWDAISWNALMAGYVQRSQIEEAQKMFNKM----PQRDVVSWNTMVSGYARRGDMAEARR 314

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           L  +  ++     ++F    +++ YA+ GM+  A RVFD M +++ VSWN+++AAY Q  
Sbjct: 315 LFDVAPIR-----DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRR 369

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A   F  M                        CRN  S         W        
Sbjct: 370 MMEEAKELFDAMP-----------------------CRNVAS---------W-------- 389

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++  YA+ G+++ A A+F  +P KD +SW  ++  Y+Q G + E +++F+ M  C E 
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEW 449

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
             N+  +  +L   + + AL  G+++H+R+IK       FV   L+ MY KCG +++A S
Sbjct: 450 -VNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHS 508

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
            F ++     V WN +I+ +  HG G +AL  F  M     +PD IT V +L ACSHSGL
Sbjct: 509 AFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGL 568

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G  YF+ M  +FG+    +HY CM+DL GRAG L  A N +++MP  PD+++WGALL
Sbjct: 569 VEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 628

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GA RIH N ELG  A++++FE++ EN G YVL+SNIYA+ GKW  VD++R +  +RG+KK
Sbjct: 629 GASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKK 688

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG+S IEV NKV  F  G+  HP+ E IY  L +L  +MK  GYV     VL DVEE+E
Sbjct: 689 VPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEE 748

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KEH+L  HSE+LA+A+GI+  PP  PI++ KNLRVC DCH   K IS I  R II+RDSN
Sbjct: 749 KEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSN 808

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF+DG CSCGDYW
Sbjct: 809 RFHHFRDGSCSCGDYW 824



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 151/344 (43%), Gaps = 28/344 (8%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I  + + G +  A R+F  M  R   ++N+++A Y  +     A  FF ++     +
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----R 166

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  +  +L   +   +   + R++   +      ++D +  N ++  +A  G+++ A  
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMP-----VKDSVSYNVMISSHANHGLVSLARH 221

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F+  P KD +SWN ++  Y +NG   EA E+F    E + I+ N     +++  Y    
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWN-----ALMAGYVQRS 276

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            + +  K+  ++ +     DV     +V  Y + G + +A  LF   P      W AI+S
Sbjct: 277 QIEEAQKMFNKMPQR----DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVS 332

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  +G  ++A   F  M D+      +++ +++ A     ++ E +  F  M       
Sbjct: 333 GYAQNGMLEEAKRVFDAMPDKNA----VSWNAMMAAYVQRRMMEEAKELFDAMPCR---- 384

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            ++  +  M+  + +AG L  A      MP + DA  W A+L A
Sbjct: 385 -NVASWNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 124/282 (43%), Gaps = 27/282 (9%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           +VI  N  +  + + G +  A  +F  +P +   ++NT++ GYA NG   +A+  F+ + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGR 383
                 P+  +Y ++L A     +L     +   + +K+ + ++V +++     +   G 
Sbjct: 166 -----RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISS-----HANHGL 215

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +  A   F   P   +V WN +++ +  +G+  +A    R++ D     D I++ +L+  
Sbjct: 216 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEA----RELFDSRTEWDAISWNALMAG 271

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
                 + E Q+ F+ M +       +  +  MV  + R G +  A       P+R D  
Sbjct: 272 YVQRSQIEEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRLFDVAPIR-DVF 325

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEV--DSENVGYYVLMS 543
            W A++     +G +E     + R+F+   D   V +  +M+
Sbjct: 326 TWTAIVSGYAQNGMLE----EAKRVFDAMPDKNAVSWNAMMA 363


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/642 (40%), Positives = 364/642 (56%), Gaps = 34/642 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN M+ G   S + V  L++   M   G   +  T   +L  CA+S     G  IH  ++
Sbjct: 51  WNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVM 110

Query: 157 KHGLEFNLFVSNNLINMYAKFGMM-------------------------------RHALR 185
           K G E + +   +LI+MYA+ G +                               R A +
Sbjct: 111 KLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARK 170

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VFD + ERDVVSWN++I  Y ++     A   F  M +  ++PD  TLVS+ S  AQ   
Sbjct: 171 VFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGS 230

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R +H  +     F   + I NA + +Y+K G +  A  +FEGL  KDV+SWNTLI 
Sbjct: 231 IELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIG 290

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-- 363
           GY    L  EA+ +FQ M    E +PN  T +S+LPA +H+GA+  G  IH  + K    
Sbjct: 291 GYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 349

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A + F 
Sbjct: 350 VTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFS 409

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M   G+ PD IT V LL+ACSHSGL+  G+  F  + +++ I P L+HYGCM+DL G A
Sbjct: 410 RMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHA 469

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G    A   I  MP+ PD  IW +LL AC++HGN+EL    + +L E++ EN G YVL+S
Sbjct: 470 GLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLS 529

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA  G+WE V  +R +   +G+KK PG SSIE+++ V  F  G++ HP+  +IY  L 
Sbjct: 530 NIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLE 589

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + + KNLR
Sbjct: 590 EMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLR 649

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           VC +CH  TK IS+I +REI+ RD  RFHHF+DG+CSC DYW
Sbjct: 650 VCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 231/466 (49%), Gaps = 47/466 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ G  P+ YTFP +LK+C   +   +G++IH  V+KLG E D +   SL+ MY 
Sbjct: 70  MYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYA 129

Query: 75  RFGL-------------------------------ANVARKLFDDMPVRDSGSWNAMISG 103
           R G                                   ARK+FD +  RD  SWNAMI+G
Sbjct: 130 RNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITG 189

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEF 162
           Y ++    EAL++  EM    V  D  T+ S+L  CA+S +I  G  IH  +   HG   
Sbjct: 190 YVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGS 249

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +L + N  I +Y+K G +  A  +F+ +  +DVVSWN++I  Y   N    A   F  M 
Sbjct: 250 SLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 309

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA----VVDMYAK 278
           ++G  P+ +T++S+    A L      R +H +I +R   ++ V  G+A    ++DMYAK
Sbjct: 310 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR---LKGVTNGSALRTSLIDMYAK 366

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G I +A  VF  +  K + SWN +I G+A +G A+ A ++F  M + N I P+  T V 
Sbjct: 367 CGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK-NGIEPDDITLVG 425

Query: 339 ILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-R 396
           +L A SH G L  G  I   V ++  +   +    C++D+ G  G   +A  + + +P  
Sbjct: 426 LLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPME 485

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
              V W +++    +HG  + A +F +++++  + P++     LL+
Sbjct: 486 PDGVIWCSLLKACKMHGNLELAESFAQKLME--IEPENSGSYVLLS 529



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 170/355 (47%), Gaps = 12/355 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI+ YV      EA++ F +   T+ +RPD  T   VL AC    ++  G++IH  V   
Sbjct: 186 MITGYVENCGYEEALELFKEMMRTN-VRPDEGTLVSVLSACAQSGSIELGREIHTLVDDH 244

Query: 58  -GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            GF   + +  + + +Y + G   +A  LF+ +  +D  SWN +I GY       EAL +
Sbjct: 245 HGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 304

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMY 174
             EM   G S + +T+ S+LP CA    I  G  IH+YI K   G+     +  +LI+MY
Sbjct: 305 FQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMY 364

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           AK G +  A +VF+ MM + + SWN++I  +        A   F+ M++ GI+PD +TLV
Sbjct: 365 AKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLV 424

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            L S  +        R +   + +       +     ++D+    G+   A  +   +P+
Sbjct: 425 GLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPM 484

Query: 295 K-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
           + D + W +L+     +G   E  E F   ++  EI P N G+YV +   Y+  G
Sbjct: 485 EPDGVIWCSLLKACKMHG-NLELAESFA--QKLMEIEPENSGSYVLLSNIYATAG 536



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 179/402 (44%), Gaps = 41/402 (10%)

Query: 152 HLYIVKHGLEFNLFVSNNLINM---YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           H  +VK GL    +  + L+ +      F  + +A+ VF+   E +++ WN+++     S
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           +D ++    +  M   G  P+  T   L    A+       R +H  +M+ G  + D   
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCEL-DRYA 120

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA--------------- 313
             +++ MYA+ G +  A  VF+    +DV+S   LITGYA  G                 
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 314 ----------------SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
                            EA+E+F+ M   N + P++GT VS+L A +  G++  G +IH 
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTN-VRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 358 RVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            V   +     + +    + +Y KCG ++ A  LF  +     V WN +I  +       
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF--GIKPHLKHYG 474
           +AL  F++ML  G  P+ +T +S+L AC+H G +  G R+ H+  ++   G+        
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG-RWIHVYIDKRLKGVTNGSALRT 358

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++D++ + G +  AH    +M +    S W A++    +HG
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHG 399


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/680 (38%), Positives = 392/680 (57%), Gaps = 6/680 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +CG    A++ F +    SGL PD  T   +L AC +L D   G ++H  + K 
Sbjct: 215 LISGHAQCGHGEHALEIFEEMQF-SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D  +  SLL +Y + G    A  +F+     +   WN M+  + Q  +  ++ ++ 
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  +  T   IL  C  +  I  G  IH   VK G E +++VS  LI+MY+K+
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RV + + E+DVVSW S+IA Y Q      A   F  MQ+ GI PD + L S  
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +N  R    +H  I   G +  DV I NA+V++YA+ G I  A + FE + +KD 
Sbjct: 454 SGCAGINAMRQGLQIHARIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDG 512

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+ N L++G+AQ+GL  EA++VF  M++   +  N  T+VS L A +++  ++QG +IHA
Sbjct: 513 ITGNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RVIK    F+  V   L+ +YGKCG  +DA   F ++   + V WN II+    HG+G +
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM  EG++P+ +TF+ +L ACSH GLV EG  YF  M +E+GI+P   HY C++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           D+FGRAG L  A  FI+ MP+  DA +W  LL AC++H N+E+G  A+  L E++  +  
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSA 751

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN YA   KW   D+VR + RDRG++K PG S IEV N V  F+ G+R HP  E+
Sbjct: 752 SYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQ 811

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ L  +  ++  +GY  +K  +  D E++ ++     HSE+LA+ FG++S PP  P++
Sbjct: 812 IYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLR 871

Query: 658 IFKNLRVCGDCHNWTKFISQ 677
           + KNLRV      +  F+ Q
Sbjct: 872 VIKNLRVEKYTSLYANFLHQ 891



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 239/480 (49%), Gaps = 13/480 (2%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKK------IHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           GL P    F   L+ACR   +G++      IH   +  G      V   L+ +Y + GL 
Sbjct: 38  GLGP--LDFACALRACRG--NGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV 93

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR++F+++  RD+ SW AM+SGY Q+G   EAL +  +M   GV   P  ++S+L  C
Sbjct: 94  LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC 153

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            +++    G LIH    KHG    +FV N +I +Y + G  R A RVF  M  RD V++N
Sbjct: 154 TKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFN 213

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+ + Q      A   F  MQ +G+ PD +T+ SL +  A L D +    +H ++ + 
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G    D I+  +++D+Y K G + +A  +F      +V+ WN ++  + Q    +++ E+
Sbjct: 274 G-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFEL 332

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M+    I PNQ TY  IL   +    +  G +IH+  +K     D++V+  L+DMY 
Sbjct: 333 FCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYS 391

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           K G ++ A  +   +     V W ++I+ +  H     AL  F++M   G+ PD+I   S
Sbjct: 392 KYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLAS 451

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            ++ C+    + +G +  H      G    +  +  +V+L+ R G +  A +  + M ++
Sbjct: 452 AISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/733 (38%), Positives = 410/733 (55%), Gaps = 51/733 (6%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDF----YTFPPVLKACRNLVDGKKIHCSVLKL 57
           IS Y+R GR +EA+  F +    S +  +     Y      +  R L D       V   
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV--- 127

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
              W+V +       Y R      AR+LF+ MP RD  SWN M+SGY Q+G   +A  + 
Sbjct: 128 --SWNVMIKG-----YVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D M       + ++  ++L    ++  +    ++     K    + L   N L+  + K 
Sbjct: 181 DRM----PEKNDVSWNALLSAYVQNSKMEEACML----FKSRENWALVSWNCLLGGFVKK 232

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF-----------TTMQQAGI 226
             +  A + FD M  RDVVSWN+II  Y QS     A   F           T M    I
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYI 292

Query: 227 QPDLLTLV-SLTSIVAQLNDCRNSRSVHGFIMRRGWFME------------DVIIGNAVV 273
           Q  ++     L   + + N+   +  + G++  +G  ME            +V   N ++
Sbjct: 293 QNRMVEEARELFDKMPERNEVSWNAMLAGYV--QGERMEMAKELFDVMPCRNVSTWNTMI 350

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPN 332
             YA+ G I+ A  +F+ +P +D +SW  +I GY+Q+G + EA+ +F QM  E   +N  
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN-- 408

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + ++ S L   + V AL  G ++H R++K       FV   L+ MY KCG I++A  LF 
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           ++     V WN +I+ +  HG G+ AL FF  M  EG++PD  T V++L+ACSH+GLV +
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDK 528

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G++YF+ M +++G+ P+ +HY CMVDL GRAG L  AHN ++NMP  PDA+IWG LLGA 
Sbjct: 529 GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
           R+HGN EL   A+D++F ++ EN G YVL+SN+YA+ G+W  V ++R   RD+G+KK PG
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEH 632
           +S IE+ NK   F  G+  HP+ ++I+  L  L  +MK  GYV   S VL DVEE+EKE 
Sbjct: 649 YSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKER 708

Query: 633 ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFH 692
           ++  HSERLA+A+GI+      PI++ KNLRVC DCHN  K++++IT R II+RD+NRFH
Sbjct: 709 MVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFH 768

Query: 693 HFKDGICSCGDYW 705
           HFKDG CSCGDYW
Sbjct: 769 HFKDGSCSCGDYW 781



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 229/478 (47%), Gaps = 51/478 (10%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           EW+V +++     Y R G  N A ++F  MP   S S+N MISGY ++G    A  + DE
Sbjct: 66  EWNVAISS-----YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M       D ++   ++    R+ N+  G    L+ +    E ++   N +++ YA+ G 
Sbjct: 121 M----PERDLVSWNVMIKGYVRNRNL--GKARELFEIMP--ERDVCSWNTMLSGYAQNGC 172

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  VFD+M E++ VSWN++++AY Q++    A   F + +          LVS   +
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSREN-------WALVSWNCL 225

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           +      +  + V          + DV+  N ++  YA+ G I+ A  +F+  PV+DV +
Sbjct: 226 LGGF--VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH-AR 358
           W  +++GY QN +  EA E+F  M E NE++ N     ++L  Y       QG ++  A+
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWN-----AMLAGYV------QGERMEMAK 332

Query: 359 VIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + + + C +V     ++  Y +CG+I +A +LF ++P+   V W A+I+ +   G   +
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM  EG R +  +F S L+ C+    +  G++  H    + G +      GC V
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQ-LHGRLVKGGYET-----GCFV 446

Query: 478 D-----LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
                 ++ + G +  A++  + M  + D   W  ++     HG    G VA  R FE
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG---FGEVAL-RFFE 499



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y + G   EA+  F Q     G R +  +F   L  C ++V    GK++H  ++K 
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKG 438

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E   FV  +LL MYC+ G    A  LF +M  +D  SWN MI+GY + G    AL   
Sbjct: 439 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFF 498

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           + M+ EG+  D  T+ ++L  C+ +  +  G      + + +G+  N      ++++  +
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  A  +   M  E D   W +++ A
Sbjct: 559 AGLLEDAHNLMKNMPFEPDAAIWGTLLGA 587



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 56/343 (16%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D+   N  +  Y + G  N A  VF+ +P    +S+N +I+GY +NG    A ++F  M 
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP 122

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           E + ++ N    +       ++G  R+  +I           DV     ++  Y + G +
Sbjct: 123 ERDLVSWN--VMIKGYVRNRNLGKARELFEIMPER-------DVCSWNTMLSGYAQNGCV 173

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF---------------------- 422
           DDA S+F ++P  + V WNA++S +  + + ++A   F                      
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK 233

Query: 423 -----RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM--MQEEFGIKPHLKHYGC 475
                RQ  D     D +++ +++T  + SG + E ++ F    +Q+ F        +  
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF-------TWTA 286

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSE 534
           MV  + +   +  A      MP R + S W A+L        ME+    +  LF+V    
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVS-WNAMLAGYVQGERMEM----AKELFDVMPCR 341

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP-GWSSI 576
           NV  +  M   YA  GK   + E ++L  D+  K+ P  W+++
Sbjct: 342 NVSTWNTMITGYAQCGK---ISEAKNLF-DKMPKRDPVSWAAM 380



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 47/277 (16%)

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           K   + +  C   D+      +  Y + GR ++A+ +F ++PR SSV +N +IS +  +G
Sbjct: 50  KSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNG 109

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
           + + A    R++ DE    D +++  ++     +  + + +  F +M E       +  +
Sbjct: 110 EFELA----RKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER-----DVCSW 160

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL------------- 520
             M+  + + G +  A +    MP + D S W ALL A   +  ME              
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVS-WNALLSAYVQNSKMEEACMLFKSRENWAL 219

Query: 521 --------GAVASDRLFEV----DSENVGYYVLMSNI---YANVGKWEGVDEVRSLARDR 565
                   G V   ++ E     DS NV   V  + I   YA  GK   +DE R L  + 
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK---IDEARQLFDES 276

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
            ++    W+++         Y  NR   +  +++D++
Sbjct: 277 PVQDVFTWTAMVSG------YIQNRMVEEARELFDKM 307


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 369/591 (62%), Gaps = 7/591 (1%)

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFV 166
           G  + ALD++    L     D    + +L  C R   +  G ++H ++V  H L+ +L +
Sbjct: 69  GTGLYALDLIQRGSL---VPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N ++NMYAK G +  A R+FD+M  +D+V+W ++IA + Q+N P  A   F  M + G 
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGF 185

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           QP+  TL SL       +       +H F ++ G +   V +G+A+VDMYA+ G +++A 
Sbjct: 186 QPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYG-YQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F+G+P K  +SWN LI+G+A+ G    A+ +   M+  N   P   TY S+L A + +
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVLSACASI 303

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL QG  +HA +IK+ L    F+   L+DMY K G IDDA  +F ++ +   V WN ++
Sbjct: 304 GALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTML 363

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           +    HG G + L+ F QML  G+ P+ I+F+ +LTACSHSGL+ EG  YF +M++ + +
Sbjct: 364 TGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKV 422

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           +P + HY   VDL GR G L  A  FI+ MP+ P A++WGALLGACR+H NMELG  A++
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAE 482

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           R FE+D  + G  +L+SNIYA+ G+W  V +VR + ++ G+KK P  S +E+ N V +F 
Sbjct: 483 RAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFV 542

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
             + THP+ ++I  +   ++ K+K +GYVPD S VL  V++ E+E  L  HSE+LA+AF 
Sbjct: 543 ANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFA 602

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           ++++P  SPI+I KN+RVCGDCH   KF+S++ +REIIVRD+NRFH F+DG
Sbjct: 603 LLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 205/391 (52%), Gaps = 7/391 (1%)

Query: 27  LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLL-HMYCRFGLANVA 82
           L PD+  +  +LK C  L     G+ +H  ++   F  +  V  +++ +MY + G  + A
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R++FD+MP +D  +W A+I+G+ Q+    +AL +  +M   G   +  T++S+L      
Sbjct: 143 RRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSE 202

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H + +K+G + +++V + L++MYA+ G M  A   FD M  +  VSWN++I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           + + +  +   A      MQ+   QP   T  S+ S  A +      + VH  +++ G  
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLK 322

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           +    IGN ++DMYAK G I+ A  VF+ L   DV+SWNT++TG AQ+GL  E ++ F+ 
Sbjct: 323 LI-AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M     I PN+ +++ +L A SH G L +G+     + K  +  DV      VD+ G+ G
Sbjct: 382 MLRIG-IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            +D A     ++P   ++  W A++    +H
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMH 471



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 163/313 (52%), Gaps = 16/313 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ + +  R  +A+  F Q  L  G +P+ +T   +LKA      L  G ++H   LK 
Sbjct: 160 LIAGFSQNNRPRDALLLFPQM-LRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY 218

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  V+V ++L+ MY R G  + A+  FD MP +   SWNA+ISG+ + G    AL +L
Sbjct: 219 GYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLL 278

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ +       T +S+L  CA    +  G  +H +++K GL+   F+ N L++MYAK 
Sbjct: 279 WKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKA 338

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFD++++ DVVSWN+++    Q          F  M + GI+P+ ++ + + 
Sbjct: 339 GSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCV- 397

Query: 238 SIVAQLNDCRNS----RSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGL 292
                L  C +S      ++ F + + + +E DV      VD+  ++G+++ A      +
Sbjct: 398 -----LTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452

Query: 293 PVKDVIS-WNTLI 304
           P++   + W  L+
Sbjct: 453 PIEPTAAVWGALL 465


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/701 (39%), Positives = 394/701 (56%), Gaps = 38/701 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH---MYCRFGLANVARKLFDDMPVRD 93
           +L  C+ L   + IH  ++K G     +  + L+    +   F     A  +FD +   +
Sbjct: 8   LLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPN 67

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN M  G+  S + V AL +   M   G+  +  T   +L  CA+S     G  IH 
Sbjct: 68  LLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHG 127

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---------------- 197
           +++K G + +L+V  +LI MY K G    A +VFDQ   RDVVS                
Sbjct: 128 HVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXS 187

Query: 198 ---------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
                          WN++I+ Y ++ +   A   F  M +  ++PD  T+V++ S  AQ
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                  R VH +I   G F  ++ I NA++D+Y K G + +A  +FEGL  KDVISWNT
Sbjct: 248 SASIELGRQVHSWIDDHG-FGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNT 306

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI GY    L  EA+ +FQ M    E +PN+ T +SILPA +H+GA+  G  IH  + K 
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGE-SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR 365

Query: 363 C--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
              +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A +
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M  +G+ PD ITFV LL+ACSHSG++  G+  F  M E++ I P L+HYGCM+DL 
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           G +G    A   I +M + PD  IW +LL AC++HGN+ELG   +  L +++ +N G YV
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA  G+W  V + R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY 
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I K
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           NLRVC +CH  TK IS+I +REII RD  RFHHF DG+CSC
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 233/454 (51%), Gaps = 40/454 (8%)

Query: 12  SEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVA 66
           S+ V   Y +   ++ GL P+ YTFP +LKAC   +   +G++IH  VLKLG + D++V 
Sbjct: 82  SDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVH 141

Query: 67  ASLLHMYCRFGLANVAR-------------------------------KLFDDMPVRDSG 95
            SL+ MY + G    AR                               K+FD++PV+D  
Sbjct: 142 TSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVV 201

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWNA+ISGY ++GN  EAL++  EM    V  D  T+ ++L  CA+S +I  G  +H +I
Sbjct: 202 SWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWI 261

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
             HG   NL + N LI++Y K G +  A  +F+ +  +DV+SWN++I  Y   N    A 
Sbjct: 262 DDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 321

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED-VIIGNAVVD 274
             F  M ++G  P+ +T++S+    A L      R +H +I +R   + +   +  +++D
Sbjct: 322 LLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLID 381

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MYAK G I +A  VF+ +  + + SWN +I G+A +G A+ A ++F  M + + I P+  
Sbjct: 382 MYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRK-DGIEPDDI 440

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
           T+V +L A SH G L  G  I   + ++  +   +    C++D+ G  G   +A  +   
Sbjct: 441 TFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINS 500

Query: 394 VPRS-SSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +      V W +++    +HG  +   +F + ++
Sbjct: 501 MEMDPDGVIWCSLLKACKMHGNVELGESFAQNLI 534


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/705 (37%), Positives = 398/705 (56%), Gaps = 37/705 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           ++  C +L   K+ H  +++ G   D + A+ L  +      A++  ARK+FD++P  +S
Sbjct: 37  LIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNS 96

Query: 95  GSWNAMISGYCQSGNAVEAL-DILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIH 152
            +WN +I  Y    + V ++   LD +  E     +  T   ++   A   ++  G  +H
Sbjct: 97  FTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH 156

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K  +  ++FV+N+LI+ Y   G +  A +VF  + E+DVVSWNS+I  + Q   P 
Sbjct: 157 GMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 216

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  M+   ++   +T+V + S  A++ D    R V  +I        ++ + NA+
Sbjct: 217 KALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYI-EENRVNVNLTLANAM 275

Query: 273 VDMYAKLGIINSACAVFE-------------------------------GLPVKDVISWN 301
           +DMY K G I  A  +F+                                +P KD+++WN
Sbjct: 276 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWN 335

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            LI+ Y QNG  +EA+ VF  ++    I  NQ T VS L A + VGAL  G  IH+ + K
Sbjct: 336 ALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKK 395

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           N +  + +V + L+ MY KCG ++ A  +F  V +     W+A+I    +HG G +A++ 
Sbjct: 396 NGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDM 455

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F +M +  V+P+ +TF ++  ACSH+GLV E +  F+ M+  +GI P  KHY C+VD+ G
Sbjct: 456 FYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLG 515

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           R+G+L  A  FI+ MP+ P  S+WGALLGAC+IH N+ L  +A  RL E++  N G +VL
Sbjct: 516 RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVL 575

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA  GKW+ V E+R   R  GLKK PG SSIE++  +  F +G+  HP  EK+Y +
Sbjct: 576 LSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGK 635

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDE-KEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           L  +  K+KS GY P+ S VLQ +EE+E KE  L  HSE+LAI +G+IS+     I++ K
Sbjct: 636 LHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIK 695

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLR+CGDCH   K ISQ+  REIIVRD  RFHHF++G CSC D+W
Sbjct: 696 NLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 255/525 (48%), Gaps = 64/525 (12%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P+ YTFP ++KA     +L  G+ +H   +K     DVFVA SL+H Y   G  + A K+
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKV 190

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           F  +  +D  SWN+MI+G+ Q G+  +AL++  +M  E V    +T+  +L  CA+  ++
Sbjct: 191 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDL 250

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------- 192
             G  +  YI ++ +  NL ++N +++MY K G +  A R+FD M E             
Sbjct: 251 EFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 310

Query: 193 ------------------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTL 233
                             +D+V+WN++I+AYEQ+  P  A   F  +Q Q  I+ + +TL
Sbjct: 311 AISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITL 370

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           VS  S  AQ+      R +H +I + G  M +  + +A++ MY+K G +  A  VF  + 
Sbjct: 371 VSTLSACAQVGALELGRWIHSYIKKNGIKM-NFYVTSALIHMYSKCGDLEKAREVFNSVE 429

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            +DV  W+ +I G A +G  SEA+++F  M+E N + PN  T+ ++  A SH G + +  
Sbjct: 430 KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEAN-VKPNGVTFTNVFCACSHTGLVDEAE 488

Query: 354 KIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLF--YQVPRSSSVPWNAIISCH 409
            +  ++  +   +  D   A C+VD+ G+ G ++ A+       +P S+SV W A++   
Sbjct: 489 SLFYKMESSYGIVPEDKHYA-CIVDVLGRSGYLEKAVKFIEAMPIPPSTSV-WGALLGAC 546

Query: 410 GIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            IH     A     ++L+   R D  H+   ++         VSE +++  +     G+K
Sbjct: 547 KIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVT----GLK 602

Query: 468 PHLKHYGCM---VDLFGRAGHLGMAHNFIQNMPVRP-DASIWGAL 508
              K  GC    +D        GM H F+      P    ++G L
Sbjct: 603 ---KEPGCSSIEID--------GMIHEFLSGDNAHPMSEKVYGKL 636



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFME----DVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           S++ + +  R  +  H  ++R G F +      +   A +  +A L     A  VF+ +P
Sbjct: 36  SLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASL---EYARKVFDEIP 92

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             +  +WNTLI  YA       +I  F  M+   ++  PN+ T+  ++ A + V +L  G
Sbjct: 93  QPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLG 152

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H   IK+ +  DVFVA  L+  Y  CG +D A  +F  +     V WN++I+     
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 212

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G  DKAL  F++M  E V+  H+T V +L+AC+    +  G+R    + EE  +  +L  
Sbjct: 213 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYI-EENRVNVNLTL 271

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
              M+D++ + G +  A      M  + D   W  +L    I  + E
Sbjct: 272 ANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYE 317



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS Y + G+ +EA+  F++  L   ++ +  T    L AC     L  G+ IH  + K 
Sbjct: 337 LISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKN 396

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + + +V ++L+HMY + G    AR++F+ +  RD   W+AMI G    G   EA+D+ 
Sbjct: 397 GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMF 456

Query: 118 DEMRLEGVSMDPITVASILPVCARS 142
            +M+   V  + +T  ++   C+ +
Sbjct: 457 YKMQEANVKPNGVTFTNVFCACSHT 481


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/696 (38%), Positives = 397/696 (57%), Gaps = 49/696 (7%)

Query: 21  FTLTSG---LRPDFYTFPPVLKACRNLVDG-------KKIHCSVL-KLGFEWDVFVAASL 69
           F+LT+    L P F      L  C  ++D        KK+H  +L       +  +   L
Sbjct: 20  FSLTTQKPQLSPKFTALTEDL--CNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKL 77

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           +  Y   G     R +FD++  ++   +N MI  Y  +G   +AL +   M  +G   D 
Sbjct: 78  MRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDN 137

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
            T   +L  C+ S N+  GL IH  +VK GL+ NL++ N L++MY K   +  A RV D+
Sbjct: 138 YTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDE 197

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M  RD+VSWNS++A Y Q+     A      M+   ++PD  T+ SL   V     C N 
Sbjct: 198 MPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN-TSCDNV 256

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
             V                     DM+ K             L  K +ISWN +I  Y  
Sbjct: 257 LYVK--------------------DMFVK-------------LKEKSLISWNVMIAVYVN 283

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           N + +EA++++  M + + + P+  +  S+LPA   + A   G +IH  V +  L  ++ 
Sbjct: 284 NAMPNEAVDLYLQM-QVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLL 342

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +   L+DMY KCG + +A ++F Q+     V W ++IS +G+ GQG  A+  F++M D G
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSG 402

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             PD I FVS+L ACSH+GLV EG+  F++M  E+GI P ++HY CMVDL GRAG +  A
Sbjct: 403 FTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEA 461

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
           ++  + MP+ P+  +WG+LL ACR++ +M +  +A+D LF++  E  GYYVL+SNIYA  
Sbjct: 462 YHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKA 521

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W+ V+ VRS+   +G+KK PG S++E+N+ V  F  G+++H + ++IY  L  L  +M
Sbjct: 522 GRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRM 581

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           K LGY+P+    L DVEE++KE  L  HSE+LAI F I+++ P S I+I KN+RVCGDCH
Sbjct: 582 KELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCH 641

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             TK IS+I EREII+RD++RFHHF+DG+CSCGDYW
Sbjct: 642 VATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 215/425 (50%), Gaps = 44/425 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV  G   +A+  F       G  PD YT+P VLKAC    NL  G +IH +V+KL
Sbjct: 108 MIRSYVNNGLYQDALLVFKTMA-NQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKL 166

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + ++++   L+ MY +    + AR++ D+MP RD  SWN+M++GY Q+G   +AL + 
Sbjct: 167 GLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLC 226

Query: 118 DEMRLEGVSMDPITVASILPVCARS--DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            EM    +  D  T+ S+LP    +  DN+L                           Y 
Sbjct: 227 REMEDLKLKPDAGTMGSLLPAVTNTSCDNVL---------------------------YV 259

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K         +F ++ E+ ++SWN +IA Y  +  P  A   +  MQ  G++PD +++ S
Sbjct: 260 K--------DMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISS 311

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +      L+     R +H ++ R+     ++++ NA++DMYAK G +  A AVF+ +  +
Sbjct: 312 VLPACGDLSAAVLGRRIHEYVERKK-LRPNLLLENALIDMYAKCGCLKEARAVFDQMMFR 370

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV+SW ++I+ Y  +G   +A+ +F+ M +     P+   +VS+L A SH G + +G   
Sbjct: 371 DVVSWTSMISAYGMSGQGKDAVALFKKMRDSG-FTPDWIAFVSVLAACSHAGLVDEGRYC 429

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
              + +  +   +    C+VD+ G+ G+ID+A  L  Q+P   +   W +++S   ++  
Sbjct: 430 FNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSS 489

Query: 415 GDKAL 419
            + AL
Sbjct: 490 MNIAL 494


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/715 (37%), Positives = 412/715 (57%), Gaps = 46/715 (6%)

Query: 33  TFPPVLKAC---RNLVDGKKIH------------------------CSVLKLGF------ 59
           +F  +LK+C   ++L+ GK +H                        C++L          
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 60  -EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E +VF   +L+  Y +  L +VA  LFD +P  D  S+N +I+ Y   G+ + AL +  
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           EMR  G+ MD  T + ++  C     ++  L  H      G +  + V N+L+  Y+K G
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLIRQL--HSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 179 MMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           ++  A  VF+ M E  RD VSWNS+I AY Q    + A   +  M   G + D+ TL S+
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGLPVK 295
            +  + + D       H   ++ G F ++  +G+ ++DMYAK G  ++ +  VFE +   
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTG-FNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGS 306

Query: 296 DVISWNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D++ WNT+I+GY+QN  L+ EA+E F+ M+      P+  ++V  + A S++ +  QG +
Sbjct: 307 DLVVWNTMISGYSQNKELSVEALECFRQMQRAGYW-PDDCSFVCAISACSNLSSPSQGKQ 365

Query: 355 IHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            HA  +K+ +  + + V   LV MY KCG + DA  LF ++P+ ++V  N+II+ +  HG
Sbjct: 366 FHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHG 425

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G ++LN F QML   + P  IT VS+L+AC+H+G V EG++YF+MM++ FGI+P  +HY
Sbjct: 426 IGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHY 485

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            CM+DL GRAG L  A   I  MP  P ++ W ALLGACR +GNMEL   A+++  +++ 
Sbjct: 486 SCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEP 545

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
            N   Y++++++Y+   KWE    +R L RDRG++K PG S IE+N +V +F   + +HP
Sbjct: 546 TNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHP 605

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDK--SFVLQD-VEEDEKEHILTSHSERLAIAFGIISS 650
           + ++I+  L  +  KMK  GYVPD   +FV  D   E EKE +L  HSE+LA+AFG++ +
Sbjct: 606 RIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFT 665

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
               P+ + KNLR+CGDCHN  KF+S I  R+I VRD+ RFH F+DG CSCGDYW
Sbjct: 666 KHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 231/454 (50%), Gaps = 15/454 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-KKIHCSVLKLGF 59
           +I+ Y   G    A+  F +     GL  D +TF  V+ AC N V   +++H      GF
Sbjct: 111 LINAYADRGDTLSALSLFGEMR-EMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGF 169

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDM--PVRDSGSWNAMISGYCQSGNAVEALDIL 117
           +  V V  SLL  Y + G+   A  +F+ M   VRD  SWN+MI  Y Q    ++AL + 
Sbjct: 170 DSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALY 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G  +D  T+AS+L   +  +++  GL  H   +K G   N  V + LI+MYAK 
Sbjct: 230 RDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKC 289

Query: 178 GM-MRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVS 235
           G  M  + +VF+++   D+V WN++I+ Y Q+ +  + A   F  MQ+AG  PD  + V 
Sbjct: 290 GAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVC 349

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
             S  + L+     +  H   M+       + + NA+V MY+K G +  A  +F+ +P  
Sbjct: 350 AISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQH 409

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           + ++ N++I GYAQ+G+ +E++ +F+ M   + I P   T VSIL A +H G + +G K 
Sbjct: 410 NTVTLNSIIAGYAQHGIGTESLNLFEQMLAAS-IAPTSITLVSILSACAHTGRVEEG-KK 467

Query: 356 HARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIH 412
           +  ++K+    +      +C++D+ G+ G++ +A  L   +P S  S  W A++     +
Sbjct: 468 YFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKY 527

Query: 413 GQ---GDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           G     +KA N F Q+      P +I   S+ +A
Sbjct: 528 GNMELAEKAANQFLQLEPTNAVP-YIMLASMYSA 560


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/663 (39%), Positives = 372/663 (56%), Gaps = 40/663 (6%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           + +H  ++      +  +   L+  Y        ARK+FD++P R+    N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
           G   E + +   M    V  D  T   +L  C+ S  I+ G  IH    K GL   LFV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++MY K G +  A  V D+M  RDVVSWNS++  Y Q+     A      M+   I 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D  T+ SL   V+                      E+V+    V DM+ K+G       
Sbjct: 239 HDAGTMASLLPAVSNTT------------------TENVMY---VKDMFFKMG------- 270

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
                  K ++SWN +I  Y +N +  EA+E++  ME  +   P+  +  S+LPA     
Sbjct: 271 ------KKSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTS 323

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G KIH  + +  L  ++ +   L+DMY KCG ++ A  +F  +     V W A+IS
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G  G+G  A+  F ++ D G+ PD I FV+ L ACSH+GL+ EG+  F +M + + I 
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P L+H  CMVDL GRAG +  A+ FIQ+M + P+  +WGALLGACR+H + ++G +A+D+
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADK 503

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF++  E  GYYVL+SNIYA  G+WE V  +R++ + +GLKK PG S++EVN  +  F  
Sbjct: 504 LFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLV 563

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+R+HP+ ++IY EL  L  KMK LGYVPD    L DVEE++KE  L  HSE+LAI F +
Sbjct: 564 GDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFAL 623

Query: 648 ISSPPK-----SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +++  +     + I+I KNLR+CGDCH   K ISQIT REII+RD+NRFH F+ G+CSCG
Sbjct: 624 MNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCG 683

Query: 703 DYW 705
           DYW
Sbjct: 684 DYW 686



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 210/432 (48%), Gaps = 57/432 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV  G   E V  F        +RPD YTFP VLKAC     +V G+KIH S  K+
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMC-GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    +FV   L+ MY + G  + AR + D+M  RD  SWN+++ GY Q+    +AL++ 
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    +S D  T+AS+LP  + +                        + N+  MY K 
Sbjct: 230 REMESVKISHDAGTMASLLPAVSNT-----------------------TTENV--MYVK- 263

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                   +F +M ++ +VSWN +I  Y ++  P+ A   ++ M+  G +PD +++ S+ 
Sbjct: 264 -------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 +     + +HG+I R+   + ++++ NA++DMYAK G +  A  VFE +  +DV
Sbjct: 317 PACGDTSALSLGKKIHGYIERKK-LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+ Y  +G   +A+ +F  +++   + P+   +V+ L A SH G L +G     
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEG----- 429

Query: 358 RVIKNC--LCFDVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
              ++C  L  D +  T       C+VD+ G+ G++ +A      +    +   W A++ 
Sbjct: 430 ---RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLG 486

Query: 408 CHGIHGQGDKAL 419
              +H   D  L
Sbjct: 487 ACRVHSDTDIGL 498


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 416/710 (58%), Gaps = 13/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M++ Y + G    A+D + +  L    +P+   +  VL AC +   L +GK IH  +   
Sbjct: 95  MLTAYAQNGHYRAALDLYKRMDL----QPNPVVYTTVLGACASIEALEEGKAIHSRISGT 150

Query: 58  -GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS-GSWNAMISGYCQSGNAVEALD 115
            G + DV +  SLL MY + G    A++LF+ M  R S  SWNAMI+ Y QSG+  EA+ 
Sbjct: 151 KGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIR 210

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           + ++M +E       T  S+L  C+    +  G  IH  I   G E +L + N L+ MYA
Sbjct: 211 LYEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYA 267

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           +   +  A ++F ++  RDVVSW+++IAA+ +++    A  F++ MQ  G++P+  T  S
Sbjct: 268 RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFAS 327

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    A + D R  R+VH  I+  G+ +  ++ G A+VD+Y   G ++ A ++F+ +  +
Sbjct: 328 VLLACASVGDLRAGRAVHDQILGNGYKIT-LVNGTALVDLYTSYGSLDEARSLFDQIENR 386

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D   W  LI GY++ G  +  +E+++ M+   ++   +  Y  ++ A + +GA     + 
Sbjct: 387 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 446

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H+ +  + +  D  +AT LV+MY + G ++ A  +F ++    ++ W  +I+ +  HG+ 
Sbjct: 447 HSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEH 506

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             AL  +++M  EG  P  +TF+ +L ACSH+GL  +G++ F  +Q ++ + P++ HY C
Sbjct: 507 GLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSC 566

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL  RAG L  A   I  MPV P+   W +LLGA RIH +++    A+ ++ ++D  +
Sbjct: 567 IIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVD 626

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+SN++A  G   G+  VR+    RG+KK  G S IEV +++  F  G+ +HP++
Sbjct: 627 PASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRF 686

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++I+ EL+ L+ K+K  GYVP+   VL DV E EKE +L  HSE+LAIAFG+I++ P + 
Sbjct: 687 QEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTT 746

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++IF  LR+C DCH+  KFIS I  REIIVRDS+RFH F+DG CSCGDYW
Sbjct: 747 LRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/517 (28%), Positives = 250/517 (48%), Gaps = 15/517 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +   L+ C++L   ++IH  +       +VF+   ++  Y + G    AR  FD +  ++
Sbjct: 30  YRDALRQCQDLESVRQIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARVAFDAIARKN 88

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SW +M++ Y Q+G+   ALD+   M L+    +P+   ++L  CA  + +  G  IH 
Sbjct: 89  DYSWGSMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIEALEEGKAIHS 145

Query: 154 YIV-KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDP 211
            I    GL+ ++ + N+L+ MYAK G +  A R+F++M   R V SWN++IAAY QS   
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF 205

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   +  M    ++P + T  S+ S  + L      R +H  I  RG  + D+ + NA
Sbjct: 206 EEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNA 261

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           ++ MYA+   ++ A  +F+ LP +DV+SW+ +I  +A+  L  EAIE +  M +   + P
Sbjct: 262 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKM-QLEGVRP 320

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N  T+ S+L A + VG LR G  +H +++ N     +   T LVD+Y   G +D+A SLF
Sbjct: 321 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLF 380

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLV 450
            Q+       W  +I  +   G     L  +R+M +    P   I +  +++AC+  G  
Sbjct: 381 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 440

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
           ++  R  H   E  G+         +V+++ R G+L  A      M  R D   W  L+ 
Sbjct: 441 ADA-RQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIA 498

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
               HG   L A+   +  E++         M  +YA
Sbjct: 499 GYAKHGEHGL-ALGLYKEMELEGAEPSELTFMVVLYA 534


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/675 (39%), Positives = 385/675 (57%), Gaps = 49/675 (7%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC   ++L + KKIH   LK     D  V   L  +Y       +AR+LFD++P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN +I  Y  +G    A+D+   M   GV  +  T   +L  C+    I  G+ IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA---YEQSND 210
           +    GLE ++FV   L++ YAK G++  A R+F  M  RDVV+WN++IA    Y   +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            +        MQ+ GI P+  T+V +      L                           
Sbjct: 194 AVQ---LIMQMQEEGICPNSSTIVGVLPTCQCL--------------------------- 223

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
               +YA+         +F+ + V++ +SW+ +I GY  +    EA+++F+MM+  + I+
Sbjct: 224 ----LYAR--------KIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQ-LSGID 270

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+  T + +LPA SH+ AL+ G   H  +I      D  +   L+DMY KCG+I  A  +
Sbjct: 271 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 330

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++ R   V WNA+I  +GIHG G +AL  F  +L  G++PD ITF+ LL++CSHSGLV
Sbjct: 331 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 390

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG+ +F  M  +F I P ++H  CMVD+ GRAG +  AH+FI+NMP  PD  IW ALL 
Sbjct: 391 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 450

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           ACRIH N+ELG   S ++  +  E+ G +VL+SNIY+  G+W+    +R   +D GLKK 
Sbjct: 451 ACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKI 510

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG S IE+N  V  F  G+++H +  +I  +L  L  +MK LGY  + SFV QDVEE+EK
Sbjct: 511 PGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEK 570

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E IL  HSE+LAIAFGI++     PI + KNLRVCGDCH   KF++ IT+REI VRD+NR
Sbjct: 571 EQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANR 630

Query: 691 FHHFKDGICSCGDYW 705
           FHHFK+G C+CGD+W
Sbjct: 631 FHHFKNGTCNCGDFW 645



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 206/422 (48%), Gaps = 56/422 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    A+D  Y   L  G+RP+ YT+P VLKAC  L+   DG +IH      
Sbjct: 80  IIRAYAWNGPFDGAID-LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMF 138

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV  +L+  Y + G+   A++LF  M  RD  +WNAMI+G    G   +A+ ++
Sbjct: 139 GLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ EG+  +  T+  +LP C                                      
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTCQ------------------------------------- 221

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             + +A ++FD M  R+ VSW+++I  Y  S+    A   F  MQ +GI PDL T++ + 
Sbjct: 222 -CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVL 280

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              + L   ++    HG+++ RG F  D +I NA++DMY+K G I+ A  VF  +   D+
Sbjct: 281 PACSHLAALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 339

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I GY  +GL  EA+ +F  +     + P+  T++ +L + SH G + +G     
Sbjct: 340 VSWNAMIIGYGIHGLGMEALGLFHDLLALG-LKPDDITFICLLSSCSHSGLVMEG----- 393

Query: 358 RVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHG 410
           R+  + +  D  +        C+VD+ G+ G ID+A      +P    V  W+A++S   
Sbjct: 394 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 453

Query: 411 IH 412
           IH
Sbjct: 454 IH 455



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           +  Y+ +L A     +L +  KIH   +KN    D  V   L  +Y  C ++  A  LF 
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           ++P  S + WN II  +  +G  D A++ +  ML  GVRP+  T+  +L ACS    + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G    H   + FG++  +     +VD + + G L  A     +M  R D   W A++  C
Sbjct: 128 GVE-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 513 RIHG 516
            ++G
Sbjct: 186 SLYG 189


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 403/709 (56%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +I  Y +  +  EA   F +     G+ PD  +   +L       ++ + +++H  V+KL
Sbjct: 169 LIGGYAQNNQFREAFGLFIEMG-RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKL 227

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  + V+ SLL  YC+     +A +LF+D+P RDS ++NA+++GY + G   EA+++ 
Sbjct: 228 GYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLF 287

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G      T A+IL    + D+I  G  +H ++VK    +N+FV+N L++ Y+K 
Sbjct: 288 FKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKH 347

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++F +M E D +S+N ++  Y  +     +   F  +Q  G         +L 
Sbjct: 348 DRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLL 407

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI A   +    R +H   +      E +++GN++VDMYAK G    A  +F  L ++  
Sbjct: 408 SIAAISLNLDIGRQIHSQTIVTDAISE-ILVGNSLVDMYAKCGEFGEANRIFSDLAIQSS 466

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q GL  + +++F  M+   +I  +  TY SI+ A + + +L  G ++H+
Sbjct: 467 VPWTAMISSYVQKGLHEDGLKLFVEMQRA-KIGADAATYASIVRACASLASLTLGKQLHS 525

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I +    +VF  + LVDMY KCG I DA+ +F ++P  +SV WNA+IS +  +G GD 
Sbjct: 526 HIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDC 585

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F +M+  G++PD ++ +S+L ACSH GLV EG +YF  M   + + P  +HY   +
Sbjct: 586 TLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTI 645

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D+  R G    A   +  MP  PD  +W ++L +C IH N EL   A+++LF +    + 
Sbjct: 646 DMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDA 705

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  G+W+ V +V+   R+RG+KK P +S +E+ +K  +F   ++THP+  
Sbjct: 706 APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMR 765

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  +L  L  KM   GY PD S  L +V+E+ K   L  HSER+AIAF +IS+P  SPI
Sbjct: 766 EIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPI 825

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K IS+I  REI VRDS+RFHHF+DG C+C DYW
Sbjct: 826 LVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 241/470 (51%), Gaps = 10/470 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F   +++  Y + G  + AR LFD M  R + +W  +I GY Q+    EA  +  EM 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G+  D +++A++L      D++     +H +++K G +  L VSN+L++ Y K   + 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A ++F+ + ERD V++N+++  Y +      A   F  MQ+ G +P   T  ++ +   
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           QL+D    + VHGF+++   F+ +V + NA++D Y+K   +  A  +F  +P  D IS+N
Sbjct: 311 QLDDIEFGQQVHGFVVKCN-FVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYN 369

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            L+T YA NG   E++E+F+ ++     +     + ++L   +    L  G +IH++ I 
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTG-FDRRNFPFATLLSIAAISLNLDIGRQIHSQTIV 428

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                ++ V   LVDMY KCG   +A  +F  +   SSVPW A+IS +   G  +  L  
Sbjct: 429 TDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKL 488

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLF 480
           F +M    +  D  T+ S++ AC+    ++ G Q + H++    G   ++     +VD++
Sbjct: 489 FVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGS--GYISNVFSGSALVDMY 546

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            + G +  A    Q MPVR   S W AL+ A   +G+ +     + RLFE
Sbjct: 547 AKCGSIKDALQMFQEMPVRNSVS-WNALISAYAQNGDGD----CTLRLFE 591


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/700 (38%), Positives = 403/700 (57%), Gaps = 44/700 (6%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           LK  RN+ D    H     L F W+     +LL  Y + G     +++FD MP  D  SW
Sbjct: 56  LKNARNVFD----HIPQPNL-FSWN-----TLLSAYSKLGYLQDMQRVFDSMPNHDVVSW 105

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           N+++SGY  +G   E++ + + M  +G V+++ IT +++L + +    +  G  IH  I 
Sbjct: 106 NSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIF 165

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVF----------------------------- 187
           K G +  LFV + L++MYAK G +  A R+F                             
Sbjct: 166 KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQ 225

Query: 188 --DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
             D M E+D +SW +II    Q+     A   F  M   G   D  T  S+ +       
Sbjct: 226 LFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLA 285

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + +H +I+R   + +++ +G+A++DMY K   +  A AVF  +  K+VISW  ++ 
Sbjct: 286 LDEGKQIHAYIIRTD-YQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLV 344

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GY QNG + EA+ +F  M+  NEI+P+  T  S++ + +++ +L +G + H + + + L 
Sbjct: 345 GYGQNGYSEEAVRIFCDMQR-NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLI 403

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             V V+  L+ +YGKCG ++ A  LF+++     V W A++S +   G+ ++ ++ F  M
Sbjct: 404 CFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETM 463

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
           L  G+ PD +TFV +L+ACS +GLV +G  YF  M +E  I P   HY CM+DL  RAG 
Sbjct: 464 LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGR 523

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           L  A NFI  MP  PDA  W  LL +CR++GN+E+G  A++ L +++ +N   Y+L+S+I
Sbjct: 524 LEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSI 583

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           YA  GKW+ V ++R   R+ G+KK PG S I+  NKV IF   +R+ P  ++IY +L +L
Sbjct: 584 YAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESL 643

Query: 606 TAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVC 665
             KM   GYVPD SFVL DVE+ EK  +L  HSE+LAIAFG++  P    I++ KNLRVC
Sbjct: 644 YLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVC 703

Query: 666 GDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           GDCHN TK+IS+IT+REI+VRD+ RFH FKDG+CSCGD+W
Sbjct: 704 GDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 197/442 (44%), Gaps = 67/442 (15%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA--------- 183
            + L  C  + N      +H  I++       F+ NNLIN Y K G +++A         
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 184 ----------------------LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
                                  RVFD M   DVVSWNS+++ Y  +     +   +  M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 222 QQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
            + G +  + +T  ++  + +        R +HG I + G +   + +G+ +VDMYAK G
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFG-YQSYLFVGSPLVDMYAKTG 187

Query: 281 IINSACAVFE-------------------------------GLPVKDVISWNTLITGYAQ 309
            IN A  +FE                                +P KD ISW T+ITG  Q
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL  EA++ F+ M        +Q T+ S+L A     AL +G +IHA +I+     ++F
Sbjct: 248 NGLFKEAVDKFKEM-GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIF 306

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V + L+DMY KC  +  A ++F ++   + + W A++  +G +G  ++A+  F  M    
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + PD  T  S++++C++   + EG + FH      G+   +     ++ L+G+ G L  A
Sbjct: 367 IHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHA 425

Query: 490 HNFIQNMPVRPDASIWGALLGA 511
           H     M +R + S W AL+  
Sbjct: 426 HQLFHEMKIRDEVS-WTALVSG 446



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 17/366 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I+   + G   EAVD F +  +  G   D +TF  VL AC   +   +GK+IH  +++ 
Sbjct: 241 IITGLTQNGLFKEAVDKFKEMGI-EGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRT 299

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ ++FV ++LL MYC+      A  +F  M  ++  SW AM+ GY Q+G + EA+ I 
Sbjct: 300 DYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIF 359

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+   +  D  T+ S++  CA   ++  G   H   +  GL   + VSN LI +Y K 
Sbjct: 360 CDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKC 419

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + HA ++F +M  RD VSW ++++ Y Q          F TM   GI PD +T V + 
Sbjct: 420 GSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVL 479

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  ++             +++             ++D+ ++ G +  A      +P   D
Sbjct: 480 SACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPD 539

Query: 297 VISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYS------HVGA 348
            I W TL++    NG     +E+ +   E  +++ P N  +Y+ +   Y+       V  
Sbjct: 540 AIGWATLLSSCRLNG----NLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAK 595

Query: 349 LRQGIK 354
           LR+G++
Sbjct: 596 LRKGMR 601



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 48/247 (19%)

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH---- 409
           K+H R+I+     + F+   L++ YGK G + +A ++F  +P+ +   WN ++S +    
Sbjct: 26  KLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLG 85

Query: 410 -------------------------GIHGQG--DKALNFFRQMLDEG-VRPDHITFVSLL 441
                                    G  G G   +++  +  ML +G V  + ITF ++L
Sbjct: 86  YLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTML 145

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP---- 497
              S+ G V  G R  H    +FG + +L     +VD++ + G +  A+   + +P    
Sbjct: 146 ILSSNRGFVDLG-RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNI 204

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGV 555
           V  +  I G L   CR         V +++LF+   + +++ +  +++ +  N    E V
Sbjct: 205 VVYNTMITGLL--RCRF-------IVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAV 255

Query: 556 DEVRSLA 562
           D+ + + 
Sbjct: 256 DKFKEMG 262


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 273/706 (38%), Positives = 395/706 (55%), Gaps = 40/706 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVR 92
           +L  C+ L   + IH  ++K G     +  + LL  +C     F     A  +F+ +   
Sbjct: 8   LLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLE-FCILSPNFDGLPYAISVFETIQEP 66

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +   WN M  G+  S + V A+ +   M   G+  +  T   +L  CA+      G  IH
Sbjct: 67  NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIH 126

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS--------------- 197
            +++K G E +L+V  +LI+MY K G  + A +VFD    RDVVS               
Sbjct: 127 GHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIE 186

Query: 198 ----------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
                           WN+II+ Y  + +   A   F  M +  ++PD  T+V++ S  A
Sbjct: 187 SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACA 246

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           Q    +  R VH +I   G    ++ I NA++D+Y+K G + +AC +F+GL  KDVISWN
Sbjct: 247 QSGSIQLGRQVHSWIDDHG-LGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWN 305

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           T+I GY    L  EA+ +FQ M    E NPN  T +SILPA + +GA+  G  IH  + K
Sbjct: 306 TMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDFGRWIHVYIDK 364

Query: 362 NC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
               +     + T L+DMY KCG I+ A  +F  +   +    NA+I    +HG+ + A 
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAF 424

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F +M   G+ PD ITFV LL+ACSHSG++  G+R F  M + + I P L+HYGCM+DL
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDL 484

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            G  G    A   I  M + PD  IW +LL AC++HGN+ELG   + +L +++ EN G Y
Sbjct: 485 LGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSY 544

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA  G+W  V  +R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY
Sbjct: 545 VLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L  +   ++  G+VPD S VLQ++EE+ K+  L  HSE+LAIAFG+IS+ P + + I 
Sbjct: 605 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVC +CH  TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 231/446 (51%), Gaps = 38/446 (8%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP +LK+C  L    +G++IH  VLKLG+E D++V  SL+ MY 
Sbjct: 90  LYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYV 149

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G    A+K+FD++PV+D  SWNA+ISG
Sbjct: 150 KNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISG 209

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y  +GN  EALD+  EM    V  D  T+ +++  CA+S +I  G  +H +I  HGL  N
Sbjct: 210 YADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSN 269

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  +F  +  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 270 LKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLR 329

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    AQL      R +H +I +R   + +   +  +++DMYAK G I
Sbjct: 330 SGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDI 389

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF  +  + + + N +I G+A +G A+ A ++F  M + N I P+  T+V +L A
Sbjct: 390 EAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRK-NGIEPDDITFVGLLSA 448

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            SH G L  G +I   + +N  +   +    C++D+ G  G   +A  +   +      V
Sbjct: 449 CSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGV 508

Query: 401 PWNAIISCHGIHGQGDKALNFFRQML 426
            W +++    +HG  +   +F ++++
Sbjct: 509 IWCSLLKACKMHGNVELGESFAQKLI 534


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 393/660 (59%), Gaps = 3/660 (0%)

Query: 47   GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            G+ IH  V+K+GF+  V V  +LL MY   G +  A  +F  MP +D  SWN++++ +  
Sbjct: 381  GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVN 440

Query: 107  SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
             G +++AL IL  M   G S++ +T  S L  C   +    G ++H  +V  GL  N  +
Sbjct: 441  DGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQII 500

Query: 167  SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
             N L++MY K G M  + RV  QM  RDVV+WN++I  Y ++ DP  A   F T++  G+
Sbjct: 501  GNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGV 560

Query: 227  QPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
              + +T+VS+ S      D     + +H +I+  G F  D  + N+++ MYAK G ++S+
Sbjct: 561  SANYITVVSVLSACLVPGDLLERGKPLHAYIVSAG-FESDEHVKNSLITMYAKCGDLSSS 619

Query: 286  CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              +F GL  + +I+WN ++   A +G   E +++   M     ++ +Q ++   L A + 
Sbjct: 620  QDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFG-LSLDQFSFSEGLSAAAK 678

Query: 346  VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            +  L +G ++H   +K     D F+     DMY KCG I + + +       S   WN +
Sbjct: 679  LAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNIL 738

Query: 406  ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
            IS  G HG  ++    F +ML+ G++P H+TFVSLLTACSH GLV +G  Y+ M+ ++FG
Sbjct: 739  ISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFG 798

Query: 466  IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
            ++P ++H  C++DL GR+G L  A  FI  MP++P+  +W +LL +C+IH +++ G  A+
Sbjct: 799  LEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAA 858

Query: 526  DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
            + L +++ E+   +VL SN++A  G+WE V+ VR     + +KK    S +++ +KV  F
Sbjct: 859  ENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSF 918

Query: 586  YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
              G+RTHP+  +IY +L ++   +K  GYV D S  LQD +E++KEH L +HSERLA+A+
Sbjct: 919  GIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAY 978

Query: 646  GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             ++S+P  S ++IFKNLR+C DCH+  KF+S++  R I++RD  RFHHF+ G+CSC DYW
Sbjct: 979  ALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/525 (30%), Positives = 275/525 (52%), Gaps = 12/525 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S  VR G   E ++ F+Q     G++P  +    ++ AC        +G ++H  V K
Sbjct: 130 MMSGIVRVGLYLEGME-FFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 188

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV+V+ ++LH+Y  +GL + +RK+F++MP R+  SW +++ GY   G   E +DI
Sbjct: 189 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 248

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR EGV  +  +++ ++  C    +   G  I   ++K GLE  L V N+LI+M+  
Sbjct: 249 YKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGN 308

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G + +A  +F+Q+ ERD +SWNSI+AAY Q+     +   F  M++   + +  T+ +L
Sbjct: 309 MGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTL 368

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++  ++  +  R +HG +++ G F   V + N ++ MYA  G    A  VF+ +P KD
Sbjct: 369 LSVLGDVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKD 427

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN+L+  +  +G + +A+ +   M    + + N  T+ S L A        +G  +H
Sbjct: 428 LISWNSLMASFVNDGRSLDALGILCSMIRTGK-SVNYVTFTSALAACFSPEFFDKGRILH 486

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             V+ + L  +  +   LV MYGK G +  +  +  Q+PR   V WNA+I  +  +   D
Sbjct: 487 GLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPD 546

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYG 474
           KAL  F+ +  EGV  ++IT VS+L+AC   G + E  +  H  ++   F    H+K+  
Sbjct: 547 KALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKN-- 604

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            ++ ++ + G L  + +    +  R   + W A+L A   HG+ E
Sbjct: 605 SLITMYAKCGDLSSSQDLFNGLDNRSIIT-WNAILAANAHHGHGE 648



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 261/531 (49%), Gaps = 11/531 (2%)

Query: 21  FTLTSGLRPDFYTFPPV-LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           F+L+    P+   F             G+ +H   +K      V    +L++MY +FG  
Sbjct: 50  FSLSDHWNPELSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRV 109

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR LFD MPVR+  SWN M+SG  + G  +E ++   +M   G+      +AS++  C
Sbjct: 110 KPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTAC 169

Query: 140 ARSDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
            RS ++   G+ +H ++ K GL  +++VS  ++++Y  +G++  + +VF++M +R+VVSW
Sbjct: 170 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 229

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
            S++  Y    +P      + +M+  G++ +  ++  + S    L D    R + G +++
Sbjct: 230 TSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIK 289

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G     + + N+++ M+  +G ++ A  +F  +  +D ISWN+++  YAQNG   E+  
Sbjct: 290 SG-LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSR 348

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC--LVD 376
           +F +M   ++   N  T  ++L     V   + G  IH  V+K  + FD  V  C  L+ 
Sbjct: 349 IFNLMRRFHD-EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVK--MGFDSVVCVCNTLLR 405

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY   GR ++A  +F Q+P    + WN++++     G+   AL     M+  G   +++T
Sbjct: 406 MYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVT 465

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F S L AC       +G R  H +    G+  +      +V ++G+ G +  +   +  M
Sbjct: 466 FTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQM 524

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
           P R D   W AL+G    + + +  A+A+ +   V+  +  Y  ++S + A
Sbjct: 525 P-RRDVVAWNALIGGYAENEDPD-KALAAFQTLRVEGVSANYITVVSVLSA 573



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS------------------------------GLRPD 30
           +I++Y +CG LS + D F      S                              GL  D
Sbjct: 606 LITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLD 665

Query: 31  FYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            ++F   L A   L    +G+++H   +KLGFE D F+  +   MY + G      K+  
Sbjct: 666 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLP 725

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
               R   SWN +IS   + G   E  +   EM   G+    +T  S+L  C+    +  
Sbjct: 726 PSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQ 785

Query: 148 GLLIHLYIVKH-GLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAY 205
           GL  +  I K  GLE  +     +I++  + G +  A     +M M+ + + W S++A+ 
Sbjct: 786 GLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 845

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVS--LTSIVAQLNDCRNSRSVHGF 255
           +   D          + +   + D + ++S  + +   +  D  N R   GF
Sbjct: 846 KIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGF 897


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/801 (35%), Positives = 422/801 (52%), Gaps = 108/801 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQF---------TLTSGL----------------------RP 29
           M++ Y + GRLS+AV+ F +          TL SG                        P
Sbjct: 97  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 156

Query: 30  DFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           + +T    +K+C  L       ++   V K   + D  VAA+L+ M+ R G  ++A +LF
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 216

Query: 87  -------------------------------DDMPVRDSGSWNAMISGYCQSGNAVEALD 115
                                          D MP RD  SWN M+S   QSG   EALD
Sbjct: 217 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 276

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           ++ +M+ +GV +D  T  S L  CAR  ++  G  +H  ++++    + +V++ L+ +YA
Sbjct: 277 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYA 336

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G  + A  VF+ + +R+ V+W  +I+ + Q      +   F  M+   +  D   L +
Sbjct: 337 KSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALAT 396

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S      D    R +H   ++ G  ++ V++ N+++ MYAK   + SA A+F  +  K
Sbjct: 397 LISGCCSRMDLCLGRQLHSLCLKSGQ-IQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 455

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------------------------- 330
           D++SW ++IT Y+Q G  ++A E F  M E N I                          
Sbjct: 456 DIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVML 515

Query: 331 ------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
                 P+  TYV++    + +GA + G +I  R +K  L  D  VA  ++ MY KCGRI
Sbjct: 516 SEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRI 575

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
            +A  +F  +     V WNA+I+ +  HG G +A+  F  +L  G +PD+I++V++L+ C
Sbjct: 576 LEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC 635

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHSGLV EG+ YF MM+    I P L+H+ CMVDL GRAGHL  A + I +MP++P A +
Sbjct: 636 SHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEV 695

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WGALL AC+IHGN EL  +A+  +FE+DS + G Y+LM+ IYA+ GK +   ++R L RD
Sbjct: 696 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 755

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G+KK PG+S +EV+NKV +F   + +HP+   I  +L  L  K+  LGYV   S     
Sbjct: 756 KGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS----- 810

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
                +  I   HSE+LA+AFG+++ P   PI I KNLR+CGDCH   K IS +T RE +
Sbjct: 811 ----TRSEI--HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFV 864

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RD+ RFHHF  G CSCGDYW
Sbjct: 865 IRDAVRFHHFNGGSCSCGDYW 885



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 185/427 (43%), Gaps = 77/427 (18%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N ++N YAK G +  A+ +F +M  RDV SWN++++ Y QS   + +   F +M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 223 QAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLG 280
           ++G   P+  TL         L    +S ++    M + +   +D  +  A+VDM+ + G
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALG--WHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCG 207

Query: 281 I-------------------------------INSACAVFEGLPVKDVISWNTLITGYAQ 309
                                           ++ A  +F+ +P +DV+SWN +++  +Q
Sbjct: 208 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 267

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           +G   EA+++   M+    +  +  TY S L A + + +LR G ++HA+VI+N    D +
Sbjct: 268 SGRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           VA+ LV++Y K G   +A  +F  +   ++V W  +IS    +G   +++  F QM  E 
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 430 VRPDHITFVSLLTACS-----------HSGLVSEGQ------------------------ 454
           +  D     +L++ C            HS  +  GQ                        
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
             F  M E+      +  +  M+  + + G++  A  F   M  + +   W A+LGA   
Sbjct: 447 AIFRFMNEK-----DIVSWTSMITAYSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQ 500

Query: 515 HGNMELG 521
           HG  E G
Sbjct: 501 HGAEEDG 507


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/653 (39%), Positives = 392/653 (60%), Gaps = 15/653 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   +++  Y +     +A +LFD +P  D  S+N +IS Y   G    AL +   MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G+ MD  T+++++  C     ++  L  H   V  G +  + V+N L+  Y K G + 
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQL--HSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 182 HALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            A RVF  M   RD VSWNS+I AY Q  +   A G F  M + G+  D+ TL S+ +  
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC-AVFEGLPVKDVIS 299
             L D       HG +++ G F ++  +G+ ++D+Y+K G   S C  VFE +   D++ 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 300 WNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WNT+++GY+QN     +A+E F+ M+      PN  ++V ++ A S++ +  QG +IH+ 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 359 VIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +K+ +  + + V   L+ MY KCG + DA  LF ++   ++V  N++I+ +  HG   +
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           +L+ F+ ML+  + P  ITF+S+L+AC+H+G V EG  YF+MM+E+F I+P  +HY CM+
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A N I  MP  P +  W +LLGACR HGN+EL   A++++ +++  N  
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV++SN+YA+ G+WE V  VR   RDRG+KK PG S IEV  ++ +F   + +HP  ++
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEED-----EKEHILTSHSERLAIAFGIISSPP 652
           IY+ L  ++ KMK  GYVPD  + L  V++D     EKE  L  HSE+LA+AFG+IS+  
Sbjct: 609 IYEFLEEMSGKMKRAGYVPDVRWAL--VKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKD 666

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             P+ + KNLR+CGDCHN  KFIS I  REI VRD++RFH FK+G CSCGDYW
Sbjct: 667 GEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 226/433 (52%), Gaps = 10/433 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-KKIHCSVLKLGF 59
           +IS Y  CG  + A+  F       GL  D +T   V+ AC + V    ++H   +  GF
Sbjct: 111 LISAYADCGETAPALGLFSGMR-EMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGF 169

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +  V V  +LL  Y + G  + A+++F  M  +RD  SWN+MI  Y Q     +AL +  
Sbjct: 170 DSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQ 229

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF- 177
           EM   G+++D  T+AS+L      +++  GL  H  ++K G   N  V + LI++Y+K  
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLVSL 236
           G M    +VF+++ E D+V WN++++ Y Q+ + +  A   F  MQ  G +P+  + V +
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  + L+     + +H   ++       + + NA++ MY+K G +  A  +F+ +   +
Sbjct: 350 ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN 409

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S N++I GYAQ+G+  E++ +FQ M E  +I P   T++S+L A +H G + +G   +
Sbjct: 410 TVSLNSMIAGYAQHGIEMESLHLFQWMLE-RQIAPTSITFISVLSACAHTGRVEEGWN-Y 467

Query: 357 ARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
             ++K     +      +C++D+ G+ G++ +A +L  ++P    S+ W +++     HG
Sbjct: 468 FNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHG 527

Query: 414 QGDKALNFFRQML 426
             + A+    Q+L
Sbjct: 528 NIELAVKAANQVL 540



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 197/416 (47%), Gaps = 39/416 (9%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C    ++ +G  +H   +K  +  + + SN+ I +Y+K G +  A + F  + + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 195 VVSWNSIIAAYEQSNDPITAH-------------------------------GFFTTMQQ 223
           V S+N+IIAAY + + P+ AH                               G F+ M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G+  D  TL ++  I A  +D      +H   +  G F   V + NA++  Y K G ++
Sbjct: 134 MGLDMDGFTLSAV--ITACCDDVGLIGQLHSVAVSSG-FDSYVSVNNALLTYYGKNGDLD 190

Query: 284 SACAVFEGL-PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            A  VF G+  ++D +SWN++I  Y Q+   S+A+ +FQ M     +N +  T  S+L A
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR-RGLNVDMFTLASVLTA 249

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-GRIDDAMSLFYQVPRSSSVP 401
           ++ +  L  G++ H ++IK     +  V + L+D+Y KC G + D   +F ++     V 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 402 WNAIISCHGIHGQG-DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN ++S +  + +  + AL  FRQM   G RP+  +FV +++ACS+    S+G++   + 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +       +     ++ ++ + G+L  A      M      S+   + G  + HG
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQ-HG 424


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/666 (40%), Positives = 381/666 (57%), Gaps = 31/666 (4%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D+F    +L  Y R      AR LFD MP +D  SWNAM+SGY +SG+  EA D+ D M 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +    + I+   +L    RS  +         + +   ++ L   N L+  Y K  M+ 
Sbjct: 154 HK----NSISWNGLLAAYVRSGRLEEAR----RLFESKSDWELISCNCLMGGYVKRNMLG 205

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF-----------TTMQQAGIQPDL 230
            A ++FDQ+  RD++SWN++I+ Y Q  D   A   F           T M  A +Q  +
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGM 265

Query: 231 LTLVS-LTSIVAQLNDCRNSRSVHGFI------MRRGWFME----DVIIGNAVVDMYAKL 279
           L     +   + Q  +   +  + G+       M R  F E    ++   N ++  Y + 
Sbjct: 266 LDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQN 325

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G +  A  +F+ +P +D +SW  +I GYAQNGL  EA+ +   M+   E + N+ T+   
Sbjct: 326 GDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE-SLNRSTFCCA 384

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A + + AL  G ++H +V++        V   LV MY KCG ID+A  +F  V     
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V WN +++ +  HG G +AL  F  M+  GV+PD IT V +L+ACSH+GL   G  YFH 
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M +++GI P+ KHY CM+DL GRAG L  A N I+NMP  PDA+ WGALLGA RIHGNME
Sbjct: 505 MNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           LG  A++ +F+++  N G YVL+SN+YA  G+W  V ++R   R  G++KTPG+S +EV 
Sbjct: 565 LGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQ 624

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
           NK+  F  G+  HP+  +IY  L  L  KMK  GYV     VL DVEE+EK+H+L  HSE
Sbjct: 625 NKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSE 684

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           +LA+AFGI++ P   PI++ KNLRVC DCHN  K IS+I  R IIVRDS+R+HHF +GIC
Sbjct: 685 KLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGIC 744

Query: 700 SCGDYW 705
           SC DYW
Sbjct: 745 SCRDYW 750



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 213/457 (46%), Gaps = 44/457 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S YVR G + EA D F +    + +  +     Y     L+  R L + K        
Sbjct: 132 MLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKS------- 184

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              +W++     L+  Y +  +   AR+LFD +PVRD  SWN MISGY Q G+  +A  +
Sbjct: 185 ---DWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRL 241

Query: 117 LDEMRL---------------EGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGL 160
            +E  +               +G+  +   V   +P     S N++         +  G 
Sbjct: 242 FEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGR 301

Query: 161 EF-------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           E        N+   N +I+ Y + G +  A  +FD M +RD VSW +IIA Y Q+     
Sbjct: 302 ELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE 361

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A      M++ G   +  T     S  A +      + VHG ++R G + +  ++GNA+V
Sbjct: 362 AMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTG-YEKGCLVGNALV 420

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY K G I+ A  VF+G+  KD++SWNT++ GYA++G   +A+ VF+ M     + P++
Sbjct: 421 GMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAG-VKPDE 479

Query: 334 GTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T V +L A SH G   +G +  H+      +  +     C++D+ G+ G +++A +L  
Sbjct: 480 ITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIR 539

Query: 393 QVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQM 425
            +P    +  W A++    IHG    G++A     +M
Sbjct: 540 NMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM 576



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 28/298 (9%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W++ ++      YC+ G    AR LFD MP RDS SW A+I+GY Q+G   EA+++L EM
Sbjct: 315 WNIMISG-----YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + +G S++  T    L  CA    +  G  +H  +V+ G E    V N L+ MY K G +
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VF  +  +D+VSWN+++A Y +      A   F +M  AG++PD +T+V + S  
Sbjct: 430 DEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSAC 489

Query: 241 AQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNA-----VVDMYAKLGIINSACAVFEGLP 293
           +   L D R +   H      G      I  N+     ++D+  + G +  A  +   +P
Sbjct: 490 SHTGLTD-RGTEYFHSMNKDYG------ITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP 542

Query: 294 VK-DVISWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            + D  +W  L+     +G   L  +A E+   ME       N G YV +   Y+  G
Sbjct: 543 FEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEP-----HNSGMYVLLSNLYAASG 595



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 61/394 (15%)

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+ + + G    AL VFD M  R+ VS+N++I+ Y ++     A   F  M         
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPH------- 92

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
                                            +D+   N ++  YA+   +  A  +F+
Sbjct: 93  ---------------------------------KDLFSWNLMLTGYARNRRLRDARMLFD 119

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P KDV+SWN +++GY ++G   EA +VF  M   N I+ N      +L AY   G L 
Sbjct: 120 SMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWN-----GLLAAYVRSGRLE 174

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +      R+ ++   +++    CL+  Y K   + DA  LF Q+P    + WN +IS + 
Sbjct: 175 EA----RRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
             G   +A    R++ +E    D  T+ +++ A    G++ E +R F  M ++  +    
Sbjct: 231 QDGDLSQA----RRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS--- 283

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
             Y  M+  + +   + M     + MP  P+   W  ++     +G++       D + +
Sbjct: 284 --YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARNLFDMMPQ 340

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
            DS  V +  +++    N    E ++ +  + RD
Sbjct: 341 RDS--VSWAAIIAGYAQNGLYEEAMNMLVEMKRD 372



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 161/376 (42%), Gaps = 63/376 (16%)

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            +  + + G  + A  VF+ +P+++ +S+N +I+GY +N   S A ++F  M   +  + 
Sbjct: 39  AISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSW 98

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSL 390
           N      +L  Y+    LR      AR++ + +   DV     ++  Y + G +D+A  +
Sbjct: 99  NL-----MLTGYARNRRLRD-----ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDV 148

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFF---------------------------R 423
           F ++P  +S+ WN +++ +   G+ ++A   F                           R
Sbjct: 149 FDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDAR 208

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           Q+ D+    D I++ ++++  +  G +S+ +R F    EE  ++     +  MV  + + 
Sbjct: 209 QLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFT-WTAMVYAYVQD 263

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A      MP + + S +  ++     +  M++G    +   E+   N+G + +M 
Sbjct: 264 GMLDEARRVFDEMPQKREMS-YNVMIAGYAQYKRMDMG---RELFEEMPFPNIGSWNIMI 319

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           + Y   G    + + R+L      + +  W++I         Y  N        +Y+E  
Sbjct: 320 SGYCQNGD---LAQARNLFDMMPQRDSVSWAAIIAG------YAQN-------GLYEEAM 363

Query: 604 NLTAKMKSLGYVPDKS 619
           N+  +MK  G   ++S
Sbjct: 364 NMLVEMKRDGESLNRS 379


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/801 (35%), Positives = 422/801 (52%), Gaps = 108/801 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQF---------TLTSGL----------------------RP 29
           M++ Y + GRLS+AV+ F +          TL SG                        P
Sbjct: 77  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 136

Query: 30  DFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           + +T    +K+C  L       ++   V K   + D  VAA+L+ M+ R G  ++A +LF
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 196

Query: 87  -------------------------------DDMPVRDSGSWNAMISGYCQSGNAVEALD 115
                                          D MP RD  SWN M+S   QSG   EALD
Sbjct: 197 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           ++ +M+ +GV +D  T  S L  CAR  ++  G  +H  ++++    + +V++ L+ +YA
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYA 316

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G  + A  VF+ + +R+ V+W  +I+ + Q      +   F  M+   +  D   L +
Sbjct: 317 KSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALAT 376

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S      D    R +H   ++ G  ++ V++ N+++ MYAK   + SA A+F  +  K
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQ-IQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 435

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------------------------- 330
           D++SW ++IT Y+Q G  ++A E F  M E N I                          
Sbjct: 436 DIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVML 495

Query: 331 ------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
                 P+  TYV++    + +GA + G +I  R +K  L  D  VA  ++ MY KCGRI
Sbjct: 496 SEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRI 555

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
            +A  +F  +     V WNA+I+ +  HG G +A+  F  +L  G +PD+I++V++L+ C
Sbjct: 556 LEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC 615

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHSGLV EG+ YF MM+    I P L+H+ CMVDL GRAGHL  A + I +MP++P A +
Sbjct: 616 SHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEV 675

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WGALL AC+IHGN EL  +A+  +FE+DS + G Y+LM+ IYA+ GK +   ++R L RD
Sbjct: 676 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G+KK PG+S +EV+NKV +F   + +HP+   I  +L  L  K+  LGYV   S     
Sbjct: 736 KGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDS----- 790

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
                +  I   HSE+LA+AFG+++ P   PI I KNLR+CGDCH   K IS +T RE +
Sbjct: 791 ----TRSEI--HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFV 844

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RD+ RFHHF  G CSCGDYW
Sbjct: 845 IRDAVRFHHFNGGSCSCGDYW 865



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 185/427 (43%), Gaps = 77/427 (18%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N ++N YAK G +  A+ +F +M  RDV SWN++++ Y QS   + +   F +M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 223 QAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLG 280
           ++G   P+  TL         L    +S ++    M + +   +D  +  A+VDM+ + G
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALG--WHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCG 187

Query: 281 I-------------------------------INSACAVFEGLPVKDVISWNTLITGYAQ 309
                                           ++ A  +F+ +P +DV+SWN +++  +Q
Sbjct: 188 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 247

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           +G   EA+++   M+    +  +  TY S L A + + +LR G ++HA+VI+N    D +
Sbjct: 248 SGRVREALDMVVDMQS-KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           VA+ LV++Y K G   +A  +F  +   ++V W  +IS    +G   +++  F QM  E 
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 430 VRPDHITFVSLLTACS-----------HSGLVSEGQ------------------------ 454
           +  D     +L++ C            HS  +  GQ                        
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
             F  M E+      +  +  M+  + + G++  A  F   M  + +   W A+LGA   
Sbjct: 427 AIFRFMNEK-----DIVSWTSMITAYSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQ 480

Query: 515 HGNMELG 521
           HG  E G
Sbjct: 481 HGAEEDG 487


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/653 (39%), Positives = 392/653 (60%), Gaps = 15/653 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   +++  Y +     +A +LFD +P  D  S+N +IS Y   G    AL +   MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G+ MD  T+++++  C     ++  L  H   V  G +  + V+N L+  Y K G + 
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIGQL--HSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 182 HALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            A RVF  M   RD VSWNS+I AY Q  +   A G F  M + G+  D+ TL S+ +  
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC-AVFEGLPVKDVIS 299
             L D       HG +++ G F ++  +G+ ++D+Y+K G   S C  VFE +   D++ 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 300 WNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WNT+++GY+QN     +A+E F+ M+      PN  ++V ++ A S++ +  QG +IH+ 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 359 VIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +K+ +  + + V   L+ MY KCG + DA  LF ++   ++V  N++I+ +  HG   +
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           +L+ F+ ML+  + P  ITF+S+L+AC+H+G V EG  YF+MM+E+F I+P  +HY CM+
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A N I  MP  P +  W +LLGACR HGN+EL   A++++ +++  N  
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV++SN+YA+ G+WE V  VR   RDRG+KK PG S IEV  ++ +F   + +HP  ++
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEED-----EKEHILTSHSERLAIAFGIISSPP 652
           IY+ L  ++ KMK  GYVPD  + L  V++D     EKE  L  HSE+LA+AFG+IS+  
Sbjct: 609 IYEFLEEMSGKMKRAGYVPDVRWAL--VKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKD 666

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             P+ + KNLR+CGDCHN  KFIS I  REI VRD++RFH FK+G CSCGDYW
Sbjct: 667 GEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 197/416 (47%), Gaps = 39/416 (9%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C    ++ +G  +H   +K  +  + + SN+ I +Y+K G +  A + F  + + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 195 VVSWNSIIAAYEQSNDPITAH-------------------------------GFFTTMQQ 223
           V S+N+IIAAY + + P+ AH                               G F+ M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G+  D  TL ++  I A  +D      +H   +  G F   V + NA++  Y K G ++
Sbjct: 134 MGLDMDXFTLSAV--ITACCDDVGLIGQLHSVAVSSG-FDSYVSVNNALLTYYGKNGDLD 190

Query: 284 SACAVFEGL-PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            A  VF G+  ++D +SWN++I  Y Q+   S+A+ +FQ M     +N +  T  S+L A
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR-RGLNVDMFTLASVLTA 249

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-GRIDDAMSLFYQVPRSSSVP 401
           ++ +  L  G++ H ++IK     +  V + L+D+Y KC G + D   +F ++     V 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 402 WNAIISCHGIHGQG-DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN ++S +  + +  + AL  FRQM   G RP+  +FV +++ACS+    S+G++   + 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +       +     ++ ++ + G+L  A      M      S+   + G  + HG
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQ-HG 424



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWD-VFVA 66
           L +A++CF Q     G RP+  +F  V+ AC NL     GK+IH   LK     + + V 
Sbjct: 324 LEDALECFRQMQGI-GYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVD 382

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            +L+ MY + G    AR+LFD M   ++ S N+MI+GY Q G  +E+L +   M    ++
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 442

Query: 127 MDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
              IT  S+L  CA +  +  G    ++   K  +E      + +I++  + G +  A  
Sbjct: 443 PTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAEN 502

Query: 186 VFDQM-MERDVVSWNSIIAA 204
           +  +M      + W S++ A
Sbjct: 503 LIARMPFNPGSIGWASLLGA 522


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/719 (38%), Positives = 415/719 (57%), Gaps = 19/719 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M++ Y   GR  +A+  F +F L  GL P+ Y +  V++AC N   +  G+     ++K 
Sbjct: 137 MMACYGNNGRELDAIKVFVEF-LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT 195

Query: 58  G-FEWDVFVAASLLHMYCRFGLA-NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G FE DV V  SL+ M+ +   +   A K+FD M   +  +W  MI+   Q G   EA+ 
Sbjct: 196 GHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIR 255

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
              +M L G   D  T++S+   CA  +N+  G  +H + ++ GL  +  V  +L++MYA
Sbjct: 256 FFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYA 313

Query: 176 KF---GMMRHALRVFDQMMERDVVSWNSIIAAY-EQSNDPITAHGFFTTM-QQAGIQPDL 230
           K    G +    +VFD+M +  V+SW ++I  Y +  N    A   F+ M  Q  ++P+ 
Sbjct: 314 KCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNH 373

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  S       L+D R  + V G   +RG    +  + N+V+ M+ K   +  A   FE
Sbjct: 374 FTFSSAFKACGNLSDPRVGKQVLGQAFKRG-LASNSSVANSVISMFVKSDRMEDAQRAFE 432

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            L  K+++S+NT + G  +N    +A ++   + E  E+  +  T+ S+L   ++VG++R
Sbjct: 433 SLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE-RELGVSAFTFASLLSGVANVGSIR 491

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +G +IH++V+K  L  +  V   L+ MY KCG ID A  +F  +   + + W ++I+   
Sbjct: 492 KGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFA 551

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG   + L  F QM++EGV+P+ +T+V++L+ACSH GLVSEG R+F+ M E+  IKP +
Sbjct: 552 KHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKM 611

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HY CMVDL  RAG L  A  FI  MP + D  +W   LGACR+H N ELG +A+ ++ E
Sbjct: 612 EHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILE 671

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +D      Y+ +SNIYA  GKWE   E+R   ++R L K  G S IEV +K+  FY G+ 
Sbjct: 672 LDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDT 731

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV----EEDEKEHILTSHSERLAIAFG 646
            HP   +IYDEL  L  ++K  GYVPD   VL  +    +E EKE +L  HSE++A+AFG
Sbjct: 732 AHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFG 791

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS+    P+++FKNLRVCGDCHN  K+IS ++ REI++RD NRFHHFKDG CSC DYW
Sbjct: 792 LISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 235/485 (48%), Gaps = 28/485 (5%)

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           +I  +  +G+   A+  LD M  +G+  MD +T +S+L  C R+ +   G L+H  +++ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM---ERDVVSWNSIIAAYEQSNDPITAH 215
            +E +  + N+LI++Y+K G    A  VF+ M    +RDVVSW++++A Y  +   + A 
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F    + G+ P+     ++    +  +     R   GF+M+ G F  DV +G +++DM
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 276 YAK-LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           + K      +A  VF+ +   +V++W  +IT   Q G   EAI  F  M   +    ++ 
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM-VLSGFESDKF 270

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC---GRIDDAMSLF 391
           T  S+  A + +  L  G ++H+  I++ L  D  V   LVDMY KC   G +DD   +F
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 392 YQVPRSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGL 449
            ++   S + W A+I+ +  +     +A+N F +M+ +G V P+H TF S   AC   G 
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC---GN 385

Query: 450 VSEGQRYFHMMQEEF--GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           +S+ +    ++ + F  G+  +      ++ +F ++  +  A    +++  +   S    
Sbjct: 386 LSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTF 445

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVG-----YYVLMSNIYANVGKWEGVDEVRSLA 562
           L G CR + N E    A   L E+    +G     +  L+S + ANVG     +++ S  
Sbjct: 446 LDGTCR-NLNFEQ---AFKLLSEITERELGVSAFTFASLLSGV-ANVGSIRKGEQIHSQV 500

Query: 563 RDRGL 567
              GL
Sbjct: 501 VKLGL 505


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/656 (38%), Positives = 384/656 (58%), Gaps = 2/656 (0%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
           +H  V KLG   D FV  +L+  Y   G  +VAR +FDD+  +D  SW  M++ Y ++  
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
             E+L + ++MR+ G   +  T++  L  C   +    G  +H   +K   + +LFV   
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           L+ +YAK G +  A R+F++M + D++ W+ +IA Y QS+    A   F  M+Q  + P+
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T  S+    A        + +H  +++ G    +V + NA++D+YAK G I ++  +F
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFG-LNSNVFVSNAIMDVYAKCGEIENSMKLF 396

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           E LP ++ ++WNT+I GY Q G    A+ +F  M E +++ P + TY S+L A + + AL
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLE-HDMQPTEVTYSSVLRASASLAAL 455

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
             G++IH+  IK     D  VA  L+DMY KCGRI+DA   F ++ +   V WNA+I  +
Sbjct: 456 EPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGY 515

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +HG   +ALN F  M     +P+ +TFV +L+ACS++GL+ +GQ +F  M +++ IKP 
Sbjct: 516 SMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPC 575

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HY CMV L GR G    A   I  +  +P   +W ALLGAC IH  ++LG V +  + 
Sbjct: 576 IEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVL 635

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           E++  +   +VL+SN+YA  G+W+ V  VR   + + ++K PG S +E    V  F  G+
Sbjct: 636 EMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGD 695

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
            +HP  + I   L  L  K +  GYVPD + VL DV++DEKE  L  HSERLA+A+G+I 
Sbjct: 696 TSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIR 755

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +P    I+I KNLR+C DCH   K IS++ +REI++RD NRFHHF+ G+CSCGDYW
Sbjct: 756 TPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 231/418 (55%), Gaps = 20/418 (4%)

Query: 14  AVDCFYQFTLT-------SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
           A +CFY+ +L         G +P+ +T    LK+C  L     GK +H   LK  ++ D+
Sbjct: 213 AENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDL 272

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           FV  +LL +Y + G    A++LF++MP  D   W+ MI+ Y QS  + EALD+   MR  
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  +  T AS+L  CA S ++  G  IH  ++K GL  N+FVSN ++++YAK G + ++
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENS 392

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           +++F+++ +R+ V+WN+II  Y Q  D   A   FT M +  +QP  +T  S+    A L
Sbjct: 393 MKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASL 452

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                   +H   + +  + +D ++ N+++DMYAK G IN A   F+ +  +D +SWN +
Sbjct: 453 AALEPGLQIHSLTI-KTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAM 511

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GY+ +G++ EA+ +F MM+   +  PN+ T+V +L A S+ G L +G      + K+ 
Sbjct: 512 ICGYSMHGMSMEALNLFDMMQH-TDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKD- 569

Query: 364 LCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSV-PWNAIISCHGIHGQGD 416
             +D+       TC+V + G+ GR D+AM L  ++    SV  W A++    IH + D
Sbjct: 570 --YDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVD 625



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 262/526 (49%), Gaps = 6/526 (1%)

Query: 45  VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           + GK +HC +LK G   D+F    LL+ Y +      A KLFD+MP  ++ S+  +  GY
Sbjct: 52  IAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGY 111

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            +     +AL  +  +  EG  ++P    ++L +    D       +H  + K G   + 
Sbjct: 112 SRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADA 171

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV   LI+ Y+  G +  A  VFD +  +D+VSW  ++A Y ++     +   F  M+  
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G +P+  T+         L      +SVHG  + +G +  D+ +G A++++YAK G I  
Sbjct: 232 GYKPNNFTISGALKSCLGLEAFNVGKSVHGCAL-KGCYDHDLFVGIALLELYAKSGEIID 290

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +FE +P  D+I W+ +I  YAQ+  + EA+++F  M +   + PN  T+ S+L A +
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQ-TSVVPNNFTFASVLQACA 349

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
              +L  G +IH+ V+K  L  +VFV+  ++D+Y KCG I+++M LF ++P  + V WN 
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNT 409

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           II  +   G G++A+N F  ML+  ++P  +T+ S+L A +    +  G +  H +  + 
Sbjct: 410 IIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQ-IHSLTIKT 468

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
                      ++D++ + G +  A      M  R + S W A++    +HG        
Sbjct: 469 MYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHGMSMEALNL 527

Query: 525 SDRLFEVDSE-NVGYYVLMSNIYANVG-KWEGVDEVRSLARDRGLK 568
            D +   D + N   +V + +  +N G  ++G     S+++D  +K
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIK 573


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 354/572 (61%), Gaps = 3/572 (0%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S + +  R  N+     +H ++V +G   +L ++N L+  YA+   +  A  +FD +  R
Sbjct: 5   SCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMR 64

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D  +W+ ++  + ++ D    +  F  + + G+ PD  TL  +        D +  R +H
Sbjct: 65  DSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIH 124

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             +++ G  + D  +  ++VDMYAK  ++  A  +FE +  KD+++W  +I  YA    A
Sbjct: 125 DVVLKHG-LLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-A 182

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            E++ +F  M E   + P++   V+++ A + +GA+ +    +  +++N    DV + T 
Sbjct: 183 YESLVLFDRMRE-EGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTA 241

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           ++DMY KCG ++ A  +F ++   + + W+A+I+ +G HG+G  A++ F  ML   + P+
Sbjct: 242 MIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPN 301

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +TFVSLL ACSH+GL+ EG R+F+ M EE  ++P +KHY CMVDL GRAG L  A   I
Sbjct: 302 RVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLI 361

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           + M V  D  +W ALLGACRIH  MEL   A++ L E+  +N G+YVL+SNIYA  GKWE
Sbjct: 362 EAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWE 421

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V + R +   R LKK PGW+ IEV+NK   F  G+R+HP+ ++IY+ L +L  K++  G
Sbjct: 422 KVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAG 481

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           YVPD  FVLQDVEE+ K+ +L +HSE+LAIAFG+I+ P   PI+I KNLRVCGDCH ++K
Sbjct: 482 YVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSK 541

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +S I  R IIVRD+NRFHHF DG CSCGDYW
Sbjct: 542 MVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 231/412 (56%), Gaps = 10/412 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L  CRN+   +++H  V+  G   D+ +A  LL+ Y +    + A  LFD + +RDS +
Sbjct: 9   LLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKT 68

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           W+ M+ G+ ++G+         E+   GV+ D  T+  ++  C    ++  G +IH  ++
Sbjct: 69  WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVL 128

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           KHGL  + FV  +L++MYAK  ++  A R+F++M+ +D+V+W  +I AY   N    +  
Sbjct: 129 KHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLV 187

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M++ G+ PD + +V++ +  A+L     +R  + +I+R G F  DVI+G A++DMY
Sbjct: 188 LFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNG-FSLDVILGTAMIDMY 246

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           AK G + SA  VF+ +  K+VISW+ +I  Y  +G   +AI++F MM  C  I PN+ T+
Sbjct: 247 AKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSC-AILPNRVTF 305

Query: 337 VSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           VS+L A SH G + +G++  ++   ++ +  DV   TC+VD+ G+ GR+D+A+ L   + 
Sbjct: 306 VSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMT 365

Query: 396 -RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFVSLLTA 443
                  W+A++    IH +    +KA N   ++  +   P H   +S + A
Sbjct: 366 VEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQN--PGHYVLLSNIYA 415



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 164/341 (48%), Gaps = 17/341 (4%)

Query: 17  CFYQFT--LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLH 71
           C+  F   L  G+ PD YT P V++ CR+  D   G+ IH  VLK G   D FV ASL+ 
Sbjct: 85  CYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVD 144

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +  +   A++LF+ M  +D  +W  MI  Y    NA E+L + D MR EGV  D + 
Sbjct: 145 MYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADC-NAYESLVLFDRMREEGVVPDKVA 203

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + +++  CA+   +      + YIV++G   ++ +   +I+MYAK G +  A  VFD+M 
Sbjct: 204 MVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMK 263

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           E++V+SW+++IAAY        A   F  M    I P+ +T VSL    +          
Sbjct: 264 EKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLR 323

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITG---Y 307
               +        DV     +VD+  + G ++ A  + E + V KD   W+ L+     +
Sbjct: 324 FFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIH 383

Query: 308 AQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
           ++  LA +A           E+ P N G YV +   Y+  G
Sbjct: 384 SKMELAEKAANSLL------ELQPQNPGHYVLLSNIYAKAG 418


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/678 (39%), Positives = 399/678 (58%), Gaps = 30/678 (4%)

Query: 43  NLVDGKKIHCS-VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           +L  G+ +H   VL        F+A  L+ MY        A +LF  MP R++ SW  ++
Sbjct: 185 DLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLV 244

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV------------CARSDNILSGL 149
           SG  Q+    +AL     MR  GV+     ++S                C  S ++    
Sbjct: 245 SGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASV---- 300

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
                    G +  LFV++NL +MY+K G++  A RVFDQM ++D V+W ++I  Y ++ 
Sbjct: 301 ---------GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 351

Query: 210 DPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
               A   F  M++ G +  D     S+ S    L D   S+S+H  + + G+ +E V +
Sbjct: 352 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE-VAV 410

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
            NA++DMYAK   + SA  V +  P   +V+S  ++I GY +     EA+ ++  +    
Sbjct: 411 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRR-Q 469

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + PN+ T+ S++   +    L QG ++HA+VIK  L  D FV + LVDMYGKCG I  +
Sbjct: 470 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLS 529

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           M LF ++   + + WNA+I+    HG G +A+  F +M+  G+RP+HI FVSLLTACSH+
Sbjct: 530 MQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHA 589

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV EG +YF+ M+E  GI+P  +HY C++D +GRAG L  A+ FI  MP++P+A  W +
Sbjct: 590 GLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCS 649

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LLGACR+ G+ ELG VA+  L +++  N G +V +S IYA++G+WE V  VR L RD  +
Sbjct: 650 LLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRI 709

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           KK PG+S ++ N K  +F + + +HP+ + IY++L  LT ++K  GY+PD SF+  ++E+
Sbjct: 710 KKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLED 769

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
             KE IL  HSER+A+AF +IS P   PI + KNLR+C DCH   KFI ++  R+IIVRD
Sbjct: 770 IAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRD 829

Query: 688 SNRFHHFKDGICSCGDYW 705
           ++RFHHF +G CSCGDYW
Sbjct: 830 NSRFHHFVNGRCSCGDYW 847



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 234/551 (42%), Gaps = 81/551 (14%)

Query: 43  NLVDGKKIHCS-VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           +L  G+ +H   VL        F+A  L+ MY        A +LF  MP R++ SW  ++
Sbjct: 35  DLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLV 94

Query: 102 SGYCQSGNAVEALDILDEMRLEGV-------------SMDP------------------- 129
           SG  Q+    +AL     MR  GV             ++ P                   
Sbjct: 95  SGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMVKY 154

Query: 130 ----------------ITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLIN 172
                           + +AS+L  C R+ ++  G L+H  +V  G    + F++N+LI 
Sbjct: 155 WGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLIT 214

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL- 231
           MY+    +  ALR+F  M  R+ VSW ++++   Q+     A   F  M++AG+ P    
Sbjct: 215 MYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFA 274

Query: 232 -----TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
                   +      +   C  S SV         F  ++ + + + DMY+K G+++ AC
Sbjct: 275 LSSAARAAAALGAPLRARSCTASASVG--------FDTELFVASNLADMYSKCGLLSEAC 326

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+ +P KD ++W  +I GYA+NG    A+  F+ M+    +  +Q  + S+L A    
Sbjct: 327 RVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA---S 383

Query: 347 GALRQG---IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           G L+ G     IH  V K     +V V   L+DMY K   ++ A  +    P      WN
Sbjct: 384 GGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGG----WN 439

Query: 404 AIISCHGIHGQ-----GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            +     I G       ++AL  + ++  +GV P+  TF S++  C+   L+ +G +   
Sbjct: 440 VVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 499

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            + +   I+        +VD++G+ G + ++      +  R D + W A++     HG+ 
Sbjct: 500 QVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQHGHG 557

Query: 519 ELGAVASDRLF 529
                A DR+ 
Sbjct: 558 REAIQAFDRMI 568



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 66/462 (14%)

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEF-NLFVSNNLINMYAKFGMMRHALRVFD 188
           + +AS+L  C R+ ++  G L+H  +V  G    + F++N+LI MY+    +  ALR+F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT---------------- 232
            M  R+ VSW ++++   Q+     A   F  M++AG+ P  L                 
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLA 140

Query: 233 --------------------------------LVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
                                           L SL     +  D R  R +H  ++  G
Sbjct: 141 ASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSG 200

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
                  + N ++ MY+    + SA  +F  +P ++ +SW TL++G +QN + ++A+  F
Sbjct: 201 AAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAF 260

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMY 378
             M     + P   T  ++  A     AL   ++  +      + FD  +FVA+ L DMY
Sbjct: 261 AAMRRAG-VAP---TRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADMY 316

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITF 437
            KCG + +A  +F Q+P+  +V W A+I  +  +G  + A+  FR M  EG V  D   F
Sbjct: 317 SKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVF 376

Query: 438 VSLLTACSHSGLVSEG--QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
            S+L+A   SG + +G   +  H    + G +  +     ++D++ ++  +  A   +  
Sbjct: 377 CSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL-- 431

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
              + D   W  + G   I G +E   V    +  V+    G
Sbjct: 432 ---KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 470



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y+    + EA+  + +     G+ P+ +TF  ++K C     L  G ++H  V+K 
Sbjct: 446 MIDGYIETDCVEEALVIYVELR-RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT 504

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D FV ++L+ MY + GL +++ +LF+++  R   +WNA+I+ + Q G+  EA+   
Sbjct: 505 DLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAF 564

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
           D M   G+  + I   S+L  C+ +  +  GL  + Y +K  HG+E      + +I+ Y 
Sbjct: 565 DRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLK-YFYSMKEAHGIEPKEEHYSCIIDTYG 623

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A +   +M ++ +   W S++ A
Sbjct: 624 RAGRLDEAYKFISEMPIKPNAYGWCSLLGA 653


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/706 (37%), Positives = 417/706 (59%), Gaps = 15/706 (2%)

Query: 13  EAVDCFYQFTLTSGLRPDFY-----TFPPV-LKACRNLVDGKKIHCSVLKLGF-EWDVFV 65
           EA   F        + P+ Y     +FP   L     L  G+++H  V+  G  ++ V +
Sbjct: 292 EATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L++MY + G    AR++F  M  +DS SWN+MI+G  Q+G  +EA++    MR   +
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                T+ S L  CA       G  IH   +K G++ N+ VSN L+ +YA+ G +    +
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 471

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPI-TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +F  M E D VSWNSII A  +S   +  A   F   Q+AG + + +T  S+ S V+ L+
Sbjct: 472 IFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTL 303
                + +HG  ++     ++    NA++  Y K G ++    +F  +  + D ++WN++
Sbjct: 532 FGELGKQIHGLALKNN-IADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSM 590

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+GY  N L ++A+++   M +  +   +   Y ++L A++ V  L +G+++HA  ++ C
Sbjct: 591 ISGYIHNELLAKALDLVWFMLQTGQ-RLDSFMYATVLSAFASVATLERGMEVHACSVRAC 649

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DV V + LVDMY KCGR+D A+  F  +P  +S  WN++IS +  HGQG++AL  F 
Sbjct: 650 LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFE 709

Query: 424 QM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            M LD    PDH+TFV +L+ACSH+GL+ EG ++F  M + +G+ P ++H+ CM D+ GR
Sbjct: 710 TMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGR 769

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGAC-RIHG-NMELGAVASDRLFEVDSENVGYYV 540
           AG L    +FI+ MP++P+  IW  +LGAC R +G   ELG  A++ LF+++ EN   YV
Sbjct: 770 AGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYV 829

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+ N+YA  G+WE + + R   +D  +KK  G+S + + + V +F  G+++HP  + IY 
Sbjct: 830 LLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYK 889

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS-PIQIF 659
           +L+ L  KM+  GYVP   F L D+E++ KE IL+ HSE+LA+AF + +    + PI+I 
Sbjct: 890 KLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIM 949

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLRVCGDCH+  K+IS+I  R+II+RDSNRFHHF+DG CSC D+W
Sbjct: 950 KNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 238/473 (50%), Gaps = 18/473 (3%)

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           H  + K   + DV++  +L++ Y   G +  ARK+FD+MP+R+  SW  ++SGY ++G  
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSN 168
            EAL  L +M  EG+  +     S+L  C    S  IL G  IH  + K     +  VSN
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143

Query: 169 NLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            LI+MY K  G + +AL  F  +  ++ VSWNSII+ Y Q+ D  +A   F++MQ  G +
Sbjct: 144 VLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203

Query: 228 PDLLTLVSLTSIVAQLN--DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           P   T  SL +    L   D R    +   I + G  + D+ +G+ +V  +AK G ++ A
Sbjct: 204 PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSG-LLTDLFVGSGLVSAFAKSGSLSYA 262

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL---PA 342
             VF  +  ++ ++ N L+ G  +     EA ++F  M    +++P   +YV +L   P 
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPE 320

Query: 343 YS---HVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           YS    VG L++G ++H  VI   L  F V +   LV+MY KCG I DA  +FY +    
Sbjct: 321 YSLAEEVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKD 379

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           SV WN++I+    +G   +A+  ++ M    + P   T +S L++C+       GQ+  H
Sbjct: 380 SVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQ-IH 438

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
               + GI  ++     ++ L+   G+L        +MP     S W +++GA
Sbjct: 439 GESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVS-WNSIIGA 490



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 261/533 (48%), Gaps = 21/533 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-----KKIHCSVL 55
           +ISVY + G    A   F       G RP  YTF  ++    +L +      ++I C++ 
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQY-DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQ 235

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           K G   D+FV + L+  + + G  + ARK+F+ M  R++ + N ++ G  +     EA  
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295

Query: 116 ILDEMRLEGVSMDP---ITVASILPVCARSDNI--LSGLLIHLYIVKHGL-EFNLFVSNN 169
           +  +M    + + P   + + S  P  + ++ +    G  +H +++  GL +F + + N 
Sbjct: 296 LFMDMN-SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           L+NMYAK G +  A RVF  M ++D VSWNS+I   +Q+   I A   + +M++  I P 
Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPG 414

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             TL+S  S  A L   +  + +HG  ++ G  + +V + NA++ +YA+ G +N    +F
Sbjct: 415 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL-NVSVSNALMTLYAETGYLNECRKIF 473

Query: 290 EGLPVKDVISWNTLITGYAQNGLA-SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
             +P  D +SWN++I   A++  +  EA+  F   +   +   N+ T+ S+L A S +  
Sbjct: 474 SSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQ-KLNRITFSSVLSAVSSLSF 532

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
              G +IH   +KN +  +      L+  YGKCG +D    +F ++  R  +V WN++IS
Sbjct: 533 GELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592

Query: 408 CHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
            + IH +   KAL+    ML  G R D   + ++L+A +    +  G    H       +
Sbjct: 593 GY-IHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGME-VHACSVRACL 650

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           +  +     +VD++ + G L  A  F   MPVR   S W +++     HG  E
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS-WNSMISGYARHGQGE 702



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 255/526 (48%), Gaps = 24/526 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL-----VDGKKIHCSVL 55
           ++S Y R G   EA+  F +  +  G+  + Y F  VL+AC+ +     + G++IH  + 
Sbjct: 73  IVSGYSRNGEHKEAL-VFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMF 131

Query: 56  KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           KL +  D  V+  L+ MY +  G    A   F D+ V++S SWN++IS Y Q+G+   A 
Sbjct: 132 KLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAF 191

Query: 115 DILDEMRLEGVSMDPITVASILPV-CARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLIN 172
            I   M+ +G      T  S++   C+ ++  +  L  I   I K GL  +LFV + L++
Sbjct: 192 RIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVS 251

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLL 231
            +AK G + +A +VF+QM  R+ V+ N ++    +      A   F  M     + P+  
Sbjct: 252 AFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESY 311

Query: 232 TLVSLTSI----VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            ++ L+S     +A+    +  R VHG ++  G     V IGN +V+MYAK G I  A  
Sbjct: 312 VIL-LSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARR 370

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF  +  KD +SWN++ITG  QNG   EA+E ++ M   ++I P   T +S L + + + 
Sbjct: 371 VFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRR-HDILPGSFTLISSLSSCASLK 429

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
             + G +IH   +K  +  +V V+  L+ +Y + G +++   +F  +P    V WN+II 
Sbjct: 430 WAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII- 488

Query: 408 CHGIHGQGDKALN----FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
             G   + +++L      F      G + + ITF S+L+A S       G++  H +  +
Sbjct: 489 --GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALK 545

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             I         ++  +G+ G +         M  R D   W +++
Sbjct: 546 NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMI 591



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
           H GA R     H+R+ KN L  DV++   L++ Y + G    A  +F ++P  + V W  
Sbjct: 16  HRGAAR---FFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWAC 72

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           I+S +  +G+  +AL F R M+ EG+  +   FVS+L AC   G V
Sbjct: 73  IVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/765 (35%), Positives = 411/765 (53%), Gaps = 98/765 (12%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E ++C+Y   +T G+  D  TF  ++ AC    D   G ++H  +LK GF  +  +  +L
Sbjct: 116 EVLECYYHM-VTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNL 174

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + +Y + G      +LF+ M  RD  SWN MIS Y   G   EALD+ DEM + GV  D 
Sbjct: 175 MGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDE 234

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA------ 183
           IT+ S++  CA+  ++  G  +HLYIV + L     + N L++MY+K G M  A      
Sbjct: 235 ITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR 294

Query: 184 ---------------------------LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
                                       ++FD+M ER +VSW ++++ Y Q      +  
Sbjct: 295 CDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLE 354

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M+   + PD + LV++ S    L D    RSVH FI+  G  + D  +GNA++D+Y
Sbjct: 355 LFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLV-DGFLGNALLDLY 413

Query: 277 AKLGIINSACAVFEGLPVK-------------------------------DVISWNTLIT 305
           AK G ++ A   FE LP K                               D++SWNT++ 
Sbjct: 414 AKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVN 473

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y ++ L +E+ E+F  M+  N + P++ T +S+L + + VGAL  GI ++  + KN + 
Sbjct: 474 AYVKHDLFNESFEIFCKMQSSN-VKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIG 532

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            D  + T L+DMYGKCG ++ A  +F Q+   +   W A+++ + + GQ  +A++ + +M
Sbjct: 533 IDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEM 592

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            + GV+PDH+TF++LL ACSH GLV EG +YF+ ++  + I P + HYGCMVDL GR GH
Sbjct: 593 EERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGH 652

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           L     FI+ MP+ PD SIW +L+ ACR H N+EL   A  +L E+D  N G +VL+SNI
Sbjct: 653 LEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNI 712

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           YA+ G+W+ V +VR+   + G+ K PG++ IE N  V  F   N                
Sbjct: 713 YADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVS------------- 759

Query: 606 TAKMKSLGYVPDKSFVLQDVE-----EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
                      D   +LQD+E     + E     + HSERLA+AFG+I++   SPI++  
Sbjct: 760 ----------ADILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVN 809

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++R+C DCH+  K ISQ  +REI++RD+ RFH F DG CSC DYW
Sbjct: 810 SVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 236/500 (47%), Gaps = 80/500 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVL-- 55
           MIS YV  G   EA+D F +  L SG+ PD  T   ++  C  L D   GK++H  ++  
Sbjct: 205 MISCYVLKGMYREALDLFDEM-LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDN 263

Query: 56  -----------------KLG--------------FEWDVFVAASLLHMYCRFGLANVARK 84
                            K G               E DV +  +L+  Y +    + AR+
Sbjct: 264 KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQ 323

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           LFD M  R   SW  M+SGY Q G   E+L++  +MR E V  D + + ++L  C   ++
Sbjct: 324 LFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLED 383

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-------------- 190
              G  +H +IV +G+  + F+ N L+++YAK G +  ALR F+Q+              
Sbjct: 384 FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDG 443

Query: 191 -----------------MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
                             E+D+VSWN+++ AY + +    +   F  MQ + ++PD  TL
Sbjct: 444 FCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTL 503

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           +SL S  A++    +   V+ +I +    + D ++G A++DMY K G +  A  +F  + 
Sbjct: 504 ISLLSSCAKVGALNHGIWVNVYIEKNEIGI-DAMLGTALIDMYGKCGCVEMAYEIFTQII 562

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K+V  W  ++  YA  G A EAI+++  MEE   + P+  T++++L A SH G + +G 
Sbjct: 563 EKNVFVWTAMMAAYAMEGQALEAIDLYLEMEE-RGVKPDHVTFIALLAACSHGGLVDEGY 621

Query: 354 KIHARVIKNCLCFDVFVAT-----CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS 407
           K   ++      F   + T     C+VD+ G+ G +++ +    ++P    V  W++++ 
Sbjct: 622 KYFNKLRS----FYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMR 677

Query: 408 CHGIHGQGDKALNFFRQMLD 427
               H   + A   F+Q+++
Sbjct: 678 ACRSHHNVELAEQAFKQLIE 697


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/730 (37%), Positives = 422/730 (57%), Gaps = 73/730 (10%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD YTFP V KAC    N   G  IH  V++LGFE +VFV  +++ MY +      ARK+
Sbjct: 124 PDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKV 183

Query: 86  FDDMPVR---DSGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCAR 141
           FD++  R   DS +WN+++S Y        A+ +  EM +  G+  D + V +ILPVC  
Sbjct: 184 FDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGY 243

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
               L G  +H + V+ GL  ++FV N L++MYAK G M  A +VF++M  +DVV+WN++
Sbjct: 244 LGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAM 303

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQ---------------------------------- 227
           +  Y Q+     A   F  M++  I+                                  
Sbjct: 304 VTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC 363

Query: 228 -PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR---RGWF---MEDVIIGNAVVDMYAKLG 280
            P+++TL+SL S  A +    + +  H + ++   +G      +D+ + NA++DMYAK  
Sbjct: 364 RPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCK 423

Query: 281 IINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYV 337
            +  A A+F+ +  KD  V++W  +I GYAQ+G A+ A+++F +M +  N I PN  T  
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483

Query: 338 SILPAYSHVGALRQGIKIHARVIKNC-LCFDV-FVATCLVDMYGKCGRIDDAMSLFYQVP 395
            +L A + + AL+ G +IHA V++   +  DV FVA CL+DMY K G +D A  +F  + 
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 543

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           + ++V W ++++ +G+HG+ + A   F +M  E +  D ITF+ +L ACSHSG+      
Sbjct: 544 KRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------ 597

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
                  +FG+ P ++HY CMVDL GRAG LG A   I +MP+ P   +W ALL ACRIH
Sbjct: 598 -------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIH 650

Query: 516 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575
            N EL   A+ +L E+ ++N G Y L+SNIYAN  +W+ V  +  L +  G+KK PGWS 
Sbjct: 651 SNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSW 710

Query: 576 IEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILT 635
           ++    ++ FY G+RTH + +KIY+ L +L  ++K+       +F L DV+++EK   L+
Sbjct: 711 VKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKA-------NFSLHDVDDEEKGDQLS 763

Query: 636 SHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 695
            HSE+LA+A+ I++ PP +PI+I KNLR+CGD H+   +IS I E EII+RDS+RFH FK
Sbjct: 764 EHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFK 823

Query: 696 DGICSCGDYW 705
           +G CSC  YW
Sbjct: 824 NGSCSCKGYW 833



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 220/473 (46%), Gaps = 52/473 (10%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN +I       +   AL +   M+    + D  T   +   C    N   G  IH  ++
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVI 153

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPIT 213
           + G E N+FV N +I+MY K   + HA +VFD++  R   D V+WNSI++ Y     P  
Sbjct: 154 RLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNV 213

Query: 214 AHGFFTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
           A   F  M    GI PD + +V++  +   L      R VHGF +R G  +EDV +GNA+
Sbjct: 214 AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSG-LVEDVFVGNAL 272

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE------- 325
           VDMYAK G +  A  VFE +  KDV++WN ++TGY+QNG   +A+ +F  M E       
Sbjct: 273 VDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDV 332

Query: 326 ----------------CNEIN-----------PNQGTYVSILPAYSHVGALRQGIKIHAR 358
                           C  ++           PN  T +S+L A + VGAL  G + H  
Sbjct: 333 VTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCY 392

Query: 359 VIKNCL-------CFDVFVATCLVDMYGKCGRIDDAMSLFYQV-PRSSS-VPWNAIISCH 409
            +K  L         D+ V   L+DMY KC  ++ A ++F ++ P+    V W  +I  +
Sbjct: 393 SVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGY 452

Query: 410 GIHGQGDKALNFFRQM--LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
             HG  + AL  F +M  +D  + P+  T   +L AC+    +  G++    +     I 
Sbjct: 453 AQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRID 512

Query: 468 PHLKHYG-CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +     C++D++ ++G +  A     +M  R +A  W +LL    +HG  E
Sbjct: 513 SDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKR-NAVSWTSLLTGYGMHGRSE 564



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 231/481 (48%), Gaps = 70/481 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++SVY  C   + AV  F + T+  G+ PD      +L  C  L   + G+++H   ++ 
Sbjct: 201 IVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRS 260

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +L+ MY + G    A K+F+ M  +D  +WNAM++GY Q+G   +AL + 
Sbjct: 261 GLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLF 320

Query: 118 DEMRLEGVSMD-----------------------------------PITVASILPVCARS 142
            +MR E +  D                                    +T+ S+L  CA  
Sbjct: 321 GKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASV 380

Query: 143 DNILSGLLIHLYIVKHGLEF-------NLFVSNNLINMYAKFGMMRHALRVFDQM--MER 193
             +L G   H Y VK  L+        +L V N LI+MYAK   +  A  +FD++   +R
Sbjct: 381 GALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDR 440

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRS 251
           DVV+W  +I  Y Q  D   A   F+ M +    I P+  T+  +    A+L   +  + 
Sbjct: 441 DVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQ 500

Query: 252 VHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           +H +++RR     DV+ + N ++DMY+K G +++A  VF+ +  ++ +SW +L+TGY  +
Sbjct: 501 IHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMH 560

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG---ALRQGIKIHARVIKNCLCFD 367
           G + +A  VF  M +   +  +  T++ +L A SH G    +  G++ +A          
Sbjct: 561 GRSEDAFRVFDEMRK-EALVLDGITFLVVLYACSHSGMDFGVDPGVEHYA---------- 609

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
                C+VD+ G+ GR+ +AM L   +P   + V W A++S   IH   + A    +++L
Sbjct: 610 -----CMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLL 664

Query: 427 D 427
           +
Sbjct: 665 E 665


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/619 (41%), Positives = 383/619 (61%), Gaps = 4/619 (0%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP R++ SW  ++SG  Q+    +AL     MR  GV+     ++S     A     L G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H   V+ G +  LFV++NL +MY+K G++  A RVFDQM ++D V+W ++I  Y ++
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 209 NDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                A   F  M++ G +  D     S+ S    L D   S+S+H  + + G+ +E V 
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE-VA 179

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           + NA++DMYAK   + SA  V +  P   +V+S  ++I GY +     EA+ ++  +   
Sbjct: 180 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRR- 238

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + PN+ T+ S++   +    L QG ++HA+VIK  L  D FV + LVDMYGKCG I  
Sbjct: 239 QGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 298

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           +M LF ++   + + WNA+I+    HG G +A+  F +M+  G+RP+HI FVSLLTACSH
Sbjct: 299 SMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSH 358

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +GLV EG +YF+ M+E  GI+P  +HY C++D +GRAG L  A+ FI  MP++P+A  W 
Sbjct: 359 AGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWC 418

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           +LLGACR+ G+ ELG VA+  L +++  N G +V +S IYA++G+WE V  VR L RD  
Sbjct: 419 SLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSR 478

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +KK PG+S ++ N K  +F + + +HP+ + IY++L  LT ++K  GY+PD SF+  ++E
Sbjct: 479 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLE 538

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           +  KE IL  HSER+A+AF +IS P   PI + KNLR+C DCH   KFI ++  R+IIVR
Sbjct: 539 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 598

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D++RFHHF +G CSCGDYW
Sbjct: 599 DNSRFHHFVNGRCSCGDYW 617



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 193/372 (51%), Gaps = 6/372 (1%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           ++HC  ++LGF+ ++FVA++L  MY + GL + A ++FD MP +D+ +W AMI GY ++G
Sbjct: 62  QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 121

Query: 109 NAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
           +   A+    +M+ EG V  D     S+L       +      IH  + K G E  + V 
Sbjct: 122 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVR 181

Query: 168 NNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           N LI+MYAK   +  A RV        +VVS  S+I  Y +++    A   +  +++ G+
Sbjct: 182 NALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGV 241

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P+  T  S+    A          +H  +++    + D  +G+ +VDMY K G+I+ + 
Sbjct: 242 EPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTD-LIRDSFVGSTLVDMYGKCGLISLSM 300

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F  +  +  I+WN +I  +AQ+G   EAI+ F  M     I PN   +VS+L A SH 
Sbjct: 301 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSG-IRPNHIAFVSLLTACSHA 359

Query: 347 GALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
           G + +G+K  ++    + +       +C++D YG+ GR+D+A     ++P + ++  W +
Sbjct: 360 GLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCS 419

Query: 405 IISCHGIHGQGD 416
           ++    + G  +
Sbjct: 420 LLGACRMRGSKE 431


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/714 (35%), Positives = 417/714 (58%), Gaps = 16/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  +  CG   EA+  + +    SG++ D +T+P V+K+     +L +GKKIH  V+KL
Sbjct: 97  MIKGFTSCGLYFEALQLYCRMVF-SGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKL 155

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  DV+V  SL+ +Y + G +  A K+F++MP RD  SWN+MISGY    +   +L + 
Sbjct: 156 RFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLF 215

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-NLFVSNNLINMYAK 176
            EM   G   D  +  S L  C+   +   G  +H + V+  +E  ++ V  ++++MY+K
Sbjct: 216 KEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSK 275

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVS 235
           +G + +A R+F  +++R++V+WN +I  Y +++    A   F  M +Q G+QPD++TL++
Sbjct: 276 YGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLIN 335

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L    A L      R++HG+ MRRG F+  +++  A++DMY + G + SA  +F+ +  K
Sbjct: 336 LLPACAILE----GRTIHGYAMRRG-FLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEK 390

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++ISWN++I  Y QNG    A+E+FQ + + + + P+  T  SILPAY+   +L +G +I
Sbjct: 391 NLISWNSIIAAYVQNGKNYSALELFQKLWD-SSLLPDSTTIASILPAYAESLSLSEGRQI 449

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA ++K+    +  +   LV MY  CG ++DA   F  V     V WN+II  + +HG G
Sbjct: 450 HAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFG 509

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             ++  F +M+   V P+  TF SLL ACS SG+V EG  YF  M+ E+GI P ++HYG 
Sbjct: 510 RISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGY 569

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DL GR G+   A  FI+ MP  P A IWG+LL A R H ++ +   A++++F+++ +N
Sbjct: 570 MLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDN 629

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YVL+ N+YA   +WE V+ ++ L   +G+ +T   S++E  +K  +   G+R+H + 
Sbjct: 630 TGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVET 689

Query: 596 EKIYDEL----RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
            KIY+ L    R +  + +   YV   S + ++     + +    HS RLA  FG+IS+ 
Sbjct: 690 NKIYEVLDIVSRMIGEEEEEDSYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTE 749

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
               + +  N R+C  CH + +  S++T REI+V DS  FHHF +G CSCG+YW
Sbjct: 750 TGRTVTVRNNTRICRKCHEFLEKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 228/441 (51%), Gaps = 8/441 (1%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           GL   A +LFD+M   D+  WN MI G+   G   EAL +   M   GV  D  T   ++
Sbjct: 74  GLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVI 133

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
                  ++  G  IH  ++K     +++V N+LI++Y K G    A +VF++M ERD+V
Sbjct: 134 KSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIV 193

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWNS+I+ Y    D   +   F  M + G +PD  + +S     + +      + +H   
Sbjct: 194 SWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHA 253

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +R      DV++  +++DMY+K G ++ A  +F+ +  +++++WN LI  YA+N   ++A
Sbjct: 254 VRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDA 313

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
              FQ M E N + P+  T +++LPA     A+ +G  IH   ++      + + T L+D
Sbjct: 314 FLCFQKMSEQNGLQPDVITLINLLPA----CAILEGRTIHGYAMRRGFLPHIVLDTALID 369

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MYG+ G++  A  +F ++   + + WN+II+ +  +G+   AL  F+++ D  + PD  T
Sbjct: 370 MYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTT 429

Query: 437 FVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
             S+L A + S  +SEG Q + ++++  +G    +     +V ++   G L  A     +
Sbjct: 430 IASILPAYAESLSLSEGRQIHAYIVKSRYGSNTII--LNSLVHMYAMCGDLEDARKCFNH 487

Query: 496 MPVRPDASIWGALLGACRIHG 516
           + ++ D   W +++ A  +HG
Sbjct: 488 VLLK-DVVSWNSIIMAYAVHG 507



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 173/340 (50%), Gaps = 10/340 (2%)

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           +A  G+M  AL++FD+M + D   WN +I  +        A   +  M  +G++ D  T 
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
             +   V  ++     + +H  +++   F+ DV + N+++ +Y KLG    A  VFE +P
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLR-FVSDVYVCNSLISLYMKLGCSWDAEKVFEEMP 188

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            +D++SWN++I+GY        ++ +F+ M +     P++ + +S L A SHV +   G 
Sbjct: 189 ERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFG-FKPDRFSTMSALGACSHVYSPNMGK 247

Query: 354 KIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           ++H   +++ +   DV V T ++DMY K G +  A  +F  + + + V WN +I C+  +
Sbjct: 248 ELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARN 307

Query: 413 GQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
            +   A   F++M ++ G++PD IT ++LL AC+    + EG R  H      G  PH+ 
Sbjct: 308 SRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEG-RTIHGYAMRRGFLPHIV 362

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
               ++D++G  G L  A      +  +   S W +++ A
Sbjct: 363 LDTALIDMYGEWGQLKSAEVIFDRIAEKNLIS-WNSIIAA 401



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 22/220 (10%)

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P  L L     +  QLND   +R++ GF                     A  G++  A 
Sbjct: 42  KPVRLVLRDRYKVTKQLNDPALTRALRGF---------------------ADSGLMEDAL 80

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F+ +   D   WN +I G+   GL  EA++++  M   + +  +  TY  ++ + + +
Sbjct: 81  QLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRM-VFSGVKADSFTYPFVIKSVTGI 139

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +L +G KIHA VIK     DV+V   L+ +Y K G   DA  +F ++P    V WN++I
Sbjct: 140 SSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMI 199

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           S +     G ++L  F++ML  G +PD  + +S L ACSH
Sbjct: 200 SGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSH 239


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/694 (39%), Positives = 401/694 (57%), Gaps = 19/694 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL P+  +F  +L +C    +L   + IH  V +LGF  DV VA +L+ MY R G  + +
Sbjct: 232 GLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDES 291

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT-VASILPVCAR 141
             +F+ M VR+  SWNAMI+ + Q G+   A  I   M+ EG   + IT V ++   C+ 
Sbjct: 292 IAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSS 351

Query: 142 SDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           S   L     +H +I   GLE ++ V   L+ MY   G +  A   FD +  +++VSWN+
Sbjct: 352 SSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNA 411

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           ++ AY  +     A   F  M++  + P+    VS  +++    D   +RS+H  ++  G
Sbjct: 412 MLTAYGDNGRAREAMELFAAMKRQSLAPNK---VSYLAVLGCCEDVSEARSIHAEVVGNG 468

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F ++  I N VV M+A+ G +  A A F+   VKD +SWNT +   +       AI  F
Sbjct: 469 LFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAF 528

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYG 379
             M+      P++ T VS++   + +G L  G  I  ++     +  DV VA+ +++M  
Sbjct: 529 YTMQH-EGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVA 587

Query: 380 KCGR-IDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHI 435
           KCG  +D+   LF ++P  R   V WN +I+ +  HG G KAL  FR M     VRPD  
Sbjct: 588 KCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSS 647

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQ 494
           TFVS+L+ CSH+GLV +G   F + +E  GI+   ++HY C+VD+ GR G+L  A +FI+
Sbjct: 648 TFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIR 707

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSENVGYYVLMSNIYANVGKWE 553
            MP+  D+ +W +LLGAC  +G++E G  A+    E+  S++VGY VL SNIYA  G+WE
Sbjct: 708 KMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVL-SNIYAAAGRWE 766

Query: 554 GVDEVRS-LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
               VR  +A  R  K+ PG SSI V N+V  F+  +R+HP+ + IY EL  L   ++  
Sbjct: 767 DSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREA 826

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVPD   VL DVEE++KE +L  HSE+LAIAFG+IS P +  I++ KNLRVC DCH  T
Sbjct: 827 GYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTAT 886

Query: 673 KFISQITEREIIVRDSNRFHHF-KDGICSCGDYW 705
           KFI+++T+REI VRD NRFHHF KDG CSCGDYW
Sbjct: 887 KFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 147/556 (26%), Positives = 254/556 (45%), Gaps = 56/556 (10%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           ++   + +H  +     E D+FVA +LL  Y + G    A ++F  + V D   WNA I 
Sbjct: 150 SIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIM 209

Query: 103 GYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
               +    + AL ++  M LEG+  +  +  +IL  C    ++     IH  + + G  
Sbjct: 210 ACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFL 269

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++ V+  L+ MY + G +  ++ VF+ M  R+ VSWN++IAA+ Q      A   +  M
Sbjct: 270 GDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRM 329

Query: 222 QQAGIQPDLLTLVSL--TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           QQ G +P+ +T V+    +  +   D   S ++HG+I   G    DV++G A+V MY   
Sbjct: 330 QQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAG-LEGDVMVGTALVTMYGST 388

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I+ A A F+ +P K+++SWN ++T Y  NG A EA+E+F  M+    + PN+ +Y+++
Sbjct: 389 GAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKR-QSLAPNKVSYLAV 447

Query: 340 LPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           L     V   R    IHA V+ N L   +  +A  +V M+ + G +++A++ F       
Sbjct: 448 LGCCEDVSEAR---SIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKD 504

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL--------- 449
           SV WN  ++          A+  F  M  EG RPD  T VS++  C+  G          
Sbjct: 505 SVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQ 564

Query: 450 ----------------------------VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
                                       V E +R F  M ++   +  L  +  M+  + 
Sbjct: 565 QLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDD---RKDLVAWNTMIAAYA 621

Query: 482 RAGH----LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA---VASDRLFEVDSE 534
           + GH    L +     Q   VRPD+S + ++L  C   G +E G      +  +  ++ +
Sbjct: 622 QHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQ 681

Query: 535 NVGYYVLMSNIYANVG 550
            V +Y  + ++   +G
Sbjct: 682 PVEHYACLVDVLGRMG 697



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 215/431 (49%), Gaps = 24/431 (5%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T   +L+ C    +L  G+++H  ++K G   +  +   L+ MY +    + A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM---DPITVASILPVCA------ 140
             R   +WN +I+   QS  A    D+   M+LE  +    + +T+ ++L   A      
Sbjct: 86  RSRGIATWNTLIAA--QSSPAA-VFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 141 ----RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
               R+ +I    ++H  I    LE +LFV+  L++ Y K G +  AL VF ++   D++
Sbjct: 143 SSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 202

Query: 197 SWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
            WN+ I A   +++ P  A      M   G+ P+  + V++ S     +    +RS+H  
Sbjct: 203 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 262

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +   G F+ DV++  A+V MY + G ++ + AVFE + V++ +SWN +I  +AQ G  S 
Sbjct: 263 VEELG-FLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSA 321

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAY--SHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           A  ++  M++     PN+ T+V+ L A   S    L +   +H  +    L  DV V T 
Sbjct: 322 AFAIYWRMQQ-EGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTA 380

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           LV MYG  G ID A + F  +P  + V WNA+++ +G +G+  +A+  F  M  + + P+
Sbjct: 381 LVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPN 440

Query: 434 HITFVSLLTAC 444
            ++++++L  C
Sbjct: 441 KVSYLAVLGCC 451



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 207/453 (45%), Gaps = 35/453 (7%)

Query: 129 PI-TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           PI T+A +L  C    ++  G  +H  IVK GL  N  + N L+ MY+K   +  A   F
Sbjct: 23  PIETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAF 82

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVA--- 241
             +  R + +WN++IAA    + P      +T M   ++A  +P+ LT++++   +A   
Sbjct: 83  SALRSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGD 139

Query: 242 -------QLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLP 293
                  +      +R VH  I  RG  +E D+ +  A++D Y K G + SA  VF  + 
Sbjct: 140 PSSSSSSRAPSIAQARIVHDDI--RGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQ 197

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           V D+I WN  I   A N    +   +         + PN+ ++V+IL +     +L    
Sbjct: 198 VPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLAR 257

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            IHARV +     DV VAT LV MYG+CG +D+++++F  +   + V WNA+I+     G
Sbjct: 258 SIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCG 317

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLL-TACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
               A   + +M  EG RP+ ITFV+ L  ACS S          H      G++  +  
Sbjct: 318 HRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMV 377

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA----CRIHGNMELGAVASDRL 528
              +V ++G  G +  A      +P +   S W A+L A     R    MEL   A+ + 
Sbjct: 378 GTALVTMYGSTGAIDRARAAFDAIPAKNIVS-WNAMLTAYGDNGRAREAMEL--FAAMKR 434

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +    V Y  ++       G  E V E RS+
Sbjct: 435 QSLAPNKVSYLAVL-------GCCEDVSEARSI 460


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/593 (39%), Positives = 375/593 (63%), Gaps = 4/593 (0%)

Query: 115  DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            + L EM ++G+ ++     S+L  C     I  G  +H +++K   E  +++   LI +Y
Sbjct: 463  EALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLY 522

Query: 175  AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
             K   +  A RV D+M ER+VVSW ++I+ Y Q      A   F  M  +G  P+  T  
Sbjct: 523  NKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFA 582

Query: 235  SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            ++ +     +  +  R +H  +++   F   + +G++++DMYAK G I  A  VF+GLP 
Sbjct: 583  TVLTSCTSSSGFQLGRQIHSLVIKTS-FESHIFVGSSLLDMYAKAGKICEARRVFDGLPE 641

Query: 295  KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            +DV+S   +I+GYAQ GL  EA+++F+ ++    +  N  TY S+L A S + AL  G +
Sbjct: 642  RDVVSCTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 355  IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            +H+ V++  L F V +   L+DMY KCG +  +  +F  +P  + + WNA++  +  HG 
Sbjct: 701  VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 415  GDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKH 472
            G +A+  F+ M +E  V+PD +TF+++L+ CSH G+   G + ++ M+ ++ G +P ++H
Sbjct: 761  GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 473  YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
            YGC+VDLFGRAG +  A  FI+ MP  P A+IWG+LLGACR+H N+ +G   + RL E++
Sbjct: 821  YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 533  SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            SEN G YV++SN+YA+ G+W+ V  VR L +++ + K PG S IE++  +  F+  +R+H
Sbjct: 881  SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 940

Query: 593  PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
            P+ E+++ ++R L+ K+K  GYVP+ S VL DV++++KE IL  HSE+LA+AFG+I +P 
Sbjct: 941  PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPG 1000

Query: 653  KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             +P++I KNLR+C DCHN+ KF+S++  RE+ +RD NRFHH   G CSCGDYW
Sbjct: 1001 GTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 225/393 (57%), Gaps = 7/393 (1%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL  +F  +  VL  C     + +G+++H  ++K  +E  V++   L+ +Y +      A
Sbjct: 472 GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 531

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R++ D+MP R+  SW AMISGY Q G A EAL +  EM + G + +  T A++L  C  S
Sbjct: 532 RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 591

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH  ++K   E ++FV ++L++MYAK G +  A RVFD + ERDVVS  +II
Sbjct: 592 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 651

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           + Y Q      A   F  +Q+ G++ + +T  S+ + ++ L    + R VH  ++R    
Sbjct: 652 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 711

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
              V++ N+++DMY+K G +  +  +F+ +P + VISWN ++ GY+++GL  EA+E+F++
Sbjct: 712 FY-VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 770

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGK 380
           M+E N++ P+  T++++L   SH G   +G++I   ++     F+  +    C+VD++G+
Sbjct: 771 MKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 830

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            GR+++A     ++P   ++  W +++    +H
Sbjct: 831 AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/753 (37%), Positives = 434/753 (57%), Gaps = 58/753 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           +IS Y + G+  EA   F    + +G  P+ Y F   L+AC+         G +IH  + 
Sbjct: 171 LISGYTQNGKPDEACARFRDM-VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLIS 229

Query: 56  KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           K  +  DV V   L+ MY      AN AR +FD + +R+S SWN++IS Y + G+AV A 
Sbjct: 230 KTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAY 289

Query: 115 DILDEMRLEGVSM-----DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN-LFVSN 168
           D+   M+ EG+       D  +  S+L    R      G  +H ++++ GL  N + + N
Sbjct: 290 DLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK-----GREVHAHVIRTGLNDNKVAIGN 344

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN---------------DPIT 213
            L+NMYAK G +  A  VF+ M+E+D VSWNS+I+  +Q+                D ++
Sbjct: 345 GLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVS 404

Query: 214 -----------------AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
                            A  +F  M + G     +T +++ S V+ L+    S  +H  +
Sbjct: 405 WNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALV 464

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASE 315
           ++     +D  IGNA++  Y K G +N    +F  +   +D +SWN++I+GY  N L  +
Sbjct: 465 LKY-CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHK 523

Query: 316 AIE-VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           A++ V+ MM++   ++    T+ +IL A + V  L +G+++HA  I+ CL  DV V + L
Sbjct: 524 AMDLVWFMMQKGQRLD--SFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSAL 581

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KCGRID A   F  +P  +   WN++IS +  HG G+KAL  F +M+ +G  PDH
Sbjct: 582 VDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 641

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TFV +L+ACSH G V EG  +F  M E + + P ++H+ CMVDL GRAG L    +FI 
Sbjct: 642 VTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFIN 701

Query: 495 NMPVRPDASIWGALLGA-CRIHG-NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           +MP++P+  IW  +LGA CR +G N ELG  A++ L E++ +N   YVL++N+YA+  KW
Sbjct: 702 SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKW 761

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           E V + R+  ++  +KK  G S + + + V +F  G++ HP+ + IYD+LR L  KM+  
Sbjct: 762 EDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDA 821

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GY+P   + L D+E + KE +L+ HSE++A+AF +++     PI+I KNLRVCGDCH+  
Sbjct: 822 GYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAF 880

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +IS+I  R+I++RDSNRFHHF+DG CSCGDYW
Sbjct: 881 GYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 252/514 (49%), Gaps = 47/514 (9%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           + +++H   +K GF  ++F++ +L+++Y R G    A+KLFD+M  R+  +W  +ISGY 
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS--DNILSGLLIHLYIVKHGLEFN 163
           Q+G   EA     +M   G   +     S L  C  S       G+ IH  I K     +
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 164 LFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           + V N LI+MY         A  VFD +  R+ +SWNSII+ Y +  D ++A+  F++MQ
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G+        + +         R  R VH  ++R G     V IGN +V+MYAK G I
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 356

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN---------- 332
             AC+VFE +  KD +SWN+LI+G  QN  + +A E+F +M E ++++ N          
Sbjct: 357 ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSE 416

Query: 333 ---------------------QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
                                + T+++IL A S +       +IHA V+K CL  D  + 
Sbjct: 417 ASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIG 476

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQ-GDKALNFFRQMLDEG 429
             L+  YGKCG +++   +F ++  +   V WN++IS + IH +   KA++    M+ +G
Sbjct: 477 NALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY-IHNELLHKAMDLVWFMMQKG 535

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH----YGCMVDLFGRAGH 485
            R D  TF ++L+AC+    +  G     M     GI+  L+        +VD++ + G 
Sbjct: 536 QRLDSFTFATILSACASVATLERG-----MEVHACGIRACLESDVVVGSALVDMYSKCGR 590

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           +  A  F + MP+R   S W +++     HG+ E
Sbjct: 591 IDYASRFFELMPLRNVYS-WNSMISGYARHGHGE 623



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%)

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T+ S++  Y       +  ++H + IK     ++F++  L+++Y + G +  A  LF ++
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
              + V W  +IS +  +G+ D+A   FR M+  G  P+H  F S L AC  SG
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/702 (36%), Positives = 401/702 (57%), Gaps = 35/702 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMPVRDS 94
           +L+ C+++   K+IH   +K+G   D      ++   C    G    AR++FD +P    
Sbjct: 13  LLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTL 72

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             WN MI GY +  +    + +   M    +  D  T   +L    R+  +  G ++  +
Sbjct: 73  FIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNH 132

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            VKHG + NLFV    I+M++   ++  A +VFD     +VV+WN +++ Y +      +
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKS 192

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M++ G+ P+ +TLV + S  ++L D    + ++ +I   G    ++I+ N ++D
Sbjct: 193 KMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYI-NGGIVERNLILENVLID 251

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG---LAS----------------- 314
           M+A  G ++ A +VF+ +  +DVISW +++TG+A  G   LA                  
Sbjct: 252 MFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAM 311

Query: 315 -----------EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
                      EA+ +F+ M+  N + P++ T VSIL A +H+GAL  G  +   + KN 
Sbjct: 312 IDGYLRMNRFIEALALFREMQMSN-VKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS 370

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +  D FV   L+DMY KCG +  A  +F ++       W A+I    I+G G++AL  F 
Sbjct: 371 IKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFS 430

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            M++  + PD IT++ +L AC+H+G+V +GQ +F  M  + GIKP++ HYGCMVDL GRA
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRA 490

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  AH  I NMPV+P++ +WG+LLGACR+H N++L  +A+ ++ E++ EN   YVL+ 
Sbjct: 491 GRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA   +WE + +VR L  +RG+KKTPG S +E+N  V  F  G+++HP+ ++IY +L 
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
           N+   +   GY PD S V  D+ E++KE  L  HSE+LAIA+ +ISS P   I+I KNLR
Sbjct: 611 NMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLR 670

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +C DCH+  K +S+   RE+IVRD  RFHHF+ G CSC ++W
Sbjct: 671 MCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 243/511 (47%), Gaps = 44/511 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-CRN--LVDGKKIHCSVLKL 57
           MI  Y R       V   Y   L S ++PD +TFP +LK   RN  L  GK +    +K 
Sbjct: 78  MIKGYSRINHPQNGVS-MYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKH 136

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++FV  + +HM+    L ++ARK+FD     +  +WN M+SGY +     ++  + 
Sbjct: 137 GFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLF 196

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GVS + +T+  +L  C++  ++  G  I+ YI    +E NL + N LI+M+A  
Sbjct: 197 IEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAAC 256

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIA-------------------------------AYE 206
           G M  A  VFD M  RDV+SW SI+                                 Y 
Sbjct: 257 GEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYL 316

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           + N  I A   F  MQ + ++PD  T+VS+ +  A L        V  +I +      D 
Sbjct: 317 RMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS-IKNDT 375

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +GNA++DMY K G +  A  VF+ +  KD  +W  +I G A NG   EA+ +F  M E 
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIH-ARVIKNCLCFDVFVATCLVDMYGKCGRID 385
           + I P++ TY+ +L A +H G + +G     +  +++ +  +V    C+VD+ G+ GR++
Sbjct: 436 S-ITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLE 494

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           +A  +   +P + +S+ W +++    +H     A    +Q+L+  + P++     LL   
Sbjct: 495 EAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILE--LEPENGAVYVLLCNI 552

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             +    E  R    +  E GIK   K  GC
Sbjct: 553 YAACKRWENLRQVRKLMMERGIK---KTPGC 580


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/615 (40%), Positives = 367/615 (59%), Gaps = 10/615 (1%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           S N +I   C+ G   +AL +L +      S    T   ++  C    ++  GL +H +I
Sbjct: 48  SNNQLIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRHI 103

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           + +G + + F++  LI MY+  G + +A +VFD+  +R +  WN++  A   +       
Sbjct: 104 LDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163

Query: 216 GFFTTMQQAGIQPDLLTLVS-LTSIVAQ---LNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
           G +  M + G++ D  T    L + VA     +     + +H  + RRG +   V I   
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRG-YNSHVYIMTT 222

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEIN 330
           +VDMYA+ G ++ A  VF G+PV++V+SW+ +I  YA+NG A EA+  F +MM E  + +
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN  T VS+L A + + AL QG  IH  +++  L   + V + LV MYG+CG++D    +
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRV 342

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++     V WN++IS +G+HG G KA+  F +ML  G  P  +TFVS+L ACSH GLV
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG+R F  M  + GIKP ++HY CMVDL GRA  L  A   +Q+M   P   +WG+LLG
Sbjct: 403 EEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           +CRIHGN+EL   AS RLF ++ +N G YVL+++IYA    W+ V  V+ L   RGL+K 
Sbjct: 463 SCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKL 522

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG   +EV  K+  F + +  +P  E+I+  L  L   MK  GY+P    VL ++E +EK
Sbjct: 523 PGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK 582

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E I+  HSE+LA+AFG+I++    PI+I KNLR+C DCH +TKFIS+  E+EI+VRD NR
Sbjct: 583 ERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNR 642

Query: 691 FHHFKDGICSCGDYW 705
           FH FK+G+CSCGDYW
Sbjct: 643 FHRFKNGVCSCGDYW 657



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 226/439 (51%), Gaps = 22/439 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I    + G+L +A+    Q +      P   T+  ++  C    +L DG ++H  +L  
Sbjct: 52  LIQSLCKEGKLKQALRVLSQES-----SPSQQTYELLILCCGHRSSLSDGLRVHRHILDN 106

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D F+A  L+ MY   G  + ARK+FD    R    WNA+      +G+  E L + 
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 118 DEMRLEGVSMDPITVASILPVCARS----DNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            +M   GV  D  T   +L  C  S    D++  G  IH ++ + G   ++++   L++M
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDM 226

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLL 231
           YA+FG + +A  VF+ M  R+VVSW+++IA Y ++     A   F  M  +     P+ +
Sbjct: 227 YARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSV 286

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFE 290
           T+VS+    A L      R +HG+I+RRG  ++ ++ + +A+V MY + G ++    VF+
Sbjct: 287 TMVSVLQACASLAALEQGRLIHGYILRRG--LDSILPVISALVTMYGRCGKLDVGQRVFD 344

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  +DV+SWN+LI+ Y  +G   +AI++F+ M   N  +P   T+VS+L A SH G + 
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEM-LANGASPTPVTFVSVLGACSHEGLVE 403

Query: 351 QGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIIS 407
           +G ++   + ++  +   V    C+VD+ G+  R+D+A  +  Q  R+   P  W +++ 
Sbjct: 404 EGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMV-QDMRTEPGPKVWGSLLG 462

Query: 408 CHGIHGQGDKALNFFRQML 426
              IHG  + A    R++ 
Sbjct: 463 SCRIHGNVELAERASRRLF 481


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/705 (38%), Positives = 392/705 (55%), Gaps = 38/705 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH---MYCRFGLANVARKLFDDMPVRD 93
           +L  C+ L   + IH  ++K G     +  + LL    +   F     A  +FD +    
Sbjct: 8   LLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPX 67

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN M  G+  S + V AL +   M   G+  +  T   +L  CA+S     G  +H 
Sbjct: 68  LLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHG 127

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV--------------------------- 186
            ++K G + +L++  +LI+MY + G +  A +V                           
Sbjct: 128 QVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIES 187

Query: 187 ----FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
               FD++  +DVVSWN+ I+ Y ++ +   A   F  M +  ++PD  T+V++ S  AQ
Sbjct: 188 AHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQ 247

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                  R VH +I   G F  ++ I NA++D+Y+K G + +AC +F+GL  KDVISWNT
Sbjct: 248 SGSIELGRQVHSWINDHG-FGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNT 306

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI GY    L  EA+ +FQ M    E  PN  T +SIL A +H+GA+  G  IH  + K 
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTMLSILSACAHLGAIDIGRWIHVYIDKR 365

Query: 363 C--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
              +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A +
Sbjct: 366 LKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M   G+ PD ITFV LL+ACSHSG++  G+  F  M  ++ + P L+HYGCM+DL 
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLX 485

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           G +G    A   I  M + PD  IW +LL AC++HGN+ELG   +  L +++ EN G YV
Sbjct: 486 GHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYV 545

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SNIYA   +W  V + R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY 
Sbjct: 546 LLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I K
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVC +CH  TK IS+I +REII RD  RFHHF+DG CSC DYW
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/737 (34%), Positives = 410/737 (55%), Gaps = 62/737 (8%)

Query: 30   DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
            D   +   LK C  ++D   G +IH  ++K GF+ DV++  +L++ Y R      A ++F
Sbjct: 673  DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 732

Query: 87   DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             +MP  ++  WN  I    QS    + +++  +M+   +  +  T+  +L  C +   + 
Sbjct: 733  HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 792

Query: 147  SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY- 205
            +   IH Y+ + GL+ ++ + N LI+MY+K G +  A RVFD M  R+  SWNS+I++Y 
Sbjct: 793  AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYA 852

Query: 206  ---------------EQSN---DPIT---------AHGF-------FTTMQQAGIQPDLL 231
                           E S+   D +T          HG+          MQ  G +P+  
Sbjct: 853  ALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSS 912

Query: 232  TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
            ++ S+   +++L      +  HG+++R G F  DV +G +++DMY K   + SA AVF+ 
Sbjct: 913  SMTSVLQAISELGFLNMGKETHGYVLRNG-FDCDVYVGTSLIDMYVKNHSLXSAQAVFDN 971

Query: 292  LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE---------------------C--NE 328
            +  +++ +WN+L++GY+  G+  +A+ +   ME+                     C    
Sbjct: 972  MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKA 1031

Query: 329  INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
              PN  +   +L A + +  L++G +IH   I+N    DVFVAT L+DMY K   + +A 
Sbjct: 1032 FMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 1091

Query: 389  SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             +F ++   +   WN +I    I G G +A++ F +M   GV PD ITF +LL+AC +SG
Sbjct: 1092 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 1151

Query: 449  LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            L+ EG +YF  M  ++ I P L+HY CMVDL GRAG+L  A + I  MP++PDA+IWGAL
Sbjct: 1152 LIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGAL 1211

Query: 509  LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
            LG+CRIH N+     A+  LF+++  N   Y+LM N+Y+   +WE +D +R L    G++
Sbjct: 1212 LGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVR 1271

Query: 569  KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
                WS I++N +V +F +  + HP   KIY EL  L ++MK LGYVPD + V Q+++E 
Sbjct: 1272 NRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEV 1331

Query: 629  EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
            EK+ IL SH+E+LAI +G+I      PI++ KN R+C DCH+  K+IS +  RE+ +RD 
Sbjct: 1332 EKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDG 1391

Query: 689  NRFHHFKDGICSCGDYW 705
             RFHHF++G CSC D+W
Sbjct: 1392 VRFHHFREGKCSCNDFW 1408



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 234/558 (41%), Gaps = 98/558 (17%)

Query: 54   VLKLGFEWDVFVAA-SLLHMYCRFG-LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
            ++KL  +W+   AA +L+  Y  FG   + A   +  +P R+   WN+ +  +  S  ++
Sbjct: 597  MIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFKSSAGSL 655

Query: 112  E-ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
               L++  E+  +GV  D    +  L  C R  +I  G+ IH  ++K G + ++++   L
Sbjct: 656  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 715

Query: 171  INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
            +N Y +   +  A +VF +M   + + WN  I    QS         F  MQ + ++ + 
Sbjct: 716  MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 775

Query: 231  LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
             T+V +     ++     ++ +HG++ R G    DV + N ++ MY+K G +  A  VF+
Sbjct: 776  ATIVRVLQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFD 834

Query: 291  GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE---------------------- 328
             +  ++  SWN++I+ YA  G  ++A  +F  +E  +                       
Sbjct: 835  SMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 894

Query: 329  ------------INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
                          PN  +  S+L A S +G L  G + H  V++N    DV+V T L+D
Sbjct: 895  VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 954

Query: 377  MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
            MY K   +  A ++F  +   +   WN+++S +   G  + AL    QM  EG++PD +T
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 1014

Query: 437  F------------------------VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
            +                          LL AC+   L+ +G+   H +    G    +  
Sbjct: 1015 WNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKE-IHCLSIRNGFIEDVFV 1073

Query: 473  YGCMVDLFGRAGHLGMAH----------------------------------NFIQNMPV 498
               ++D++ ++  L  AH                                  N +Q + V
Sbjct: 1074 ATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGV 1133

Query: 499  RPDASIWGALLGACRIHG 516
             PDA  + ALL AC+  G
Sbjct: 1134 GPDAITFTALLSACKNSG 1151


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 390/682 (57%), Gaps = 7/682 (1%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   VL  C   R +  GK +H   +KL  + ++ V  +L+ MY ++G    ++ +
Sbjct: 274 PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMI 333

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSD 143
           F     ++  SWN M+ G+   G+     D+L +M    E V  D +T+ + +PVC    
Sbjct: 334 FKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDES 393

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            + S   +H Y +K    ++  ++N  +  YAK G + +A RVF  +  + + SWN++I 
Sbjct: 394 VLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIG 453

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y QS+DP  +      M+ +G+ PD  T+ SL S  ++L   R  + VHGFI+R  W  
Sbjct: 454 GYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIR-NWLE 512

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ +  +V+ +Y   G + +   +F+ +    ++SWNT+ITG+ QNG    A+ +F+ M
Sbjct: 513 RDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQM 572

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                I P   + +++  A S + +LR G + HA  +K+ L  + F+A  ++DMY K G 
Sbjct: 573 V-LYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGA 631

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I  +  +F  +   S+  WNA+I  +G+HG+  +A+  F +M   G  PD +TF+ +LTA
Sbjct: 632 ITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTA 691

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           C+HSGL+ EG RY   M+  FG+KP+LKHY C++D+ GRAG L  A      M   PD  
Sbjct: 692 CNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVG 751

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IW +LL  CRIH N+E+G   + +LF ++ E    YVL+SN+YA +GKW+ V +VR   +
Sbjct: 752 IWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMK 811

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           +  L+K  G S IE+N KV  F  G R    +E+I      L  K+  +GY PD S V  
Sbjct: 812 EMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQH 871

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           D+ E+EK   L  HSE+LAI +G+I +   + ++++KNLR+C DCHN  K IS++ EREI
Sbjct: 872 DLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREI 931

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           +VRD+ RFHHF  G CSCGDYW
Sbjct: 932 VVRDNKRFHHFNKGFCSCGDYW 953



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 277/544 (50%), Gaps = 43/544 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y R     E ++ F +    + L PD +TFP V+KAC  + D   G  +H  V+K 
Sbjct: 157 VISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKT 216

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+FV  +L+  Y   G  + A KLFD MP R+  SWN+MI  +  +G+        
Sbjct: 217 GLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD-------- 268

Query: 118 DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
                +G  M D  TV ++LPVCAR   I  G  +H + VK  L+  L V+N L++MY+K
Sbjct: 269 -----DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSK 323

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--AG---IQPDLL 231
           +G +  +  +F     ++VVSWN+++  +    D    HG F  ++Q  AG   ++ D +
Sbjct: 324 WGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGD---IHGTFDLLRQMLAGSEDVKADEV 380

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T+++   +    +   + + +H + +++  F+ D ++ NA V  YAK G ++ A  VF G
Sbjct: 381 TILNAVPVCFDESVLPSLKELHCYSLKQE-FVYDELLANAFVASYAKCGSLSYAQRVFHG 439

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  K + SWN LI GYAQ+     +++    M+    + P+  T  S+L A S + +LR 
Sbjct: 440 IRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLL-PDNFTVCSLLSACSKLKSLRL 498

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G ++H  +I+N L  D+FV   ++ +Y  CG +     LF  +  +S V WN +I+ H  
Sbjct: 499 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQ 558

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-----HSGLVSEGQRYFHMMQEEFGI 466
           +G  ++AL  FRQM+  G++P  I+ +++  ACS       G  +      H++++   I
Sbjct: 559 NGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFI 618

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
              +      +D++ + G +  +      +  +  AS W A++    +HG     A  + 
Sbjct: 619 ACSI------IDMYAKNGAITQSSKVFNGLKEKSAAS-WNAMIMGYGMHGR----AKEAI 667

Query: 527 RLFE 530
           +LFE
Sbjct: 668 KLFE 671



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 201/402 (50%), Gaps = 16/402 (3%)

Query: 47  GKKIHCSVL-KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+KIH  V        D  +   ++ MY   G  + +R  FD +  ++   WNA+IS Y 
Sbjct: 103 GRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYS 162

Query: 106 QSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           ++    E L++  +M  +   + D  T   ++  CA   ++  GL +H  +VK GL  +L
Sbjct: 163 RNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDL 222

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV N L++ Y   G +  AL++FD M ER++VSWNS+I  +  + D              
Sbjct: 223 FVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD------------DG 270

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
              PD+ T+V++  + A+  +    + VHG+ ++     +++++ NA++DMY+K G I  
Sbjct: 271 AFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLS-LDKELVVNNALMDMYSKWGCIID 329

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAY 343
           +  +F+    K+V+SWNT++ G++  G      ++  QM+    ++  ++ T ++ +P  
Sbjct: 330 SQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
                L    ++H   +K    +D  +A   V  Y KCG +  A  +F+ +   +   WN
Sbjct: 390 FDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWN 449

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           A+I  +        +L+   QM + G+ PD+ T  SLL+ACS
Sbjct: 450 ALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACS 491



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 187/422 (44%), Gaps = 28/422 (6%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPI------TVASILPVCARSDNILSGLLIH-L 153
           IS +C++G+  ++  ++ E   +  S   +       +  +L    +  +I  G  IH L
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHL 109

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
                 L  +  +   +I MYA  G    +   FD +  +++  WN++I++Y ++     
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 214 AHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
               F  M  +  + PD  T   +    A ++D     +VHG +++ G  +ED+ +GNA+
Sbjct: 170 VLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTG-LVEDLFVGNAL 228

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V  Y   G ++ A  +F+ +P ++++SWN++I  ++ NG             +     P+
Sbjct: 229 VSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG-------------DDGAFMPD 275

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T V++LP  +    +  G  +H   +K  L  ++ V   L+DMY K G I D+  +F 
Sbjct: 276 VATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFK 335

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTAC-SHSGL 449
                + V WN ++      G      +  RQML   E V+ D +T ++ +  C   S L
Sbjct: 336 LNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVL 395

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            S  + + + +++EF     L +    V  + + G L  A      +  +   S W AL+
Sbjct: 396 PSLKELHCYSLKQEFVYDELLAN--AFVASYAKCGSLSYAQRVFHGIRSKTLNS-WNALI 452

Query: 510 GA 511
           G 
Sbjct: 453 GG 454



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 122/280 (43%), Gaps = 18/280 (6%)

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           D    R +H  +        D ++   ++ MYA  G  + + + F+ L  K++  WN +I
Sbjct: 99  DIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVI 158

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           + Y++N L  E +E+F  M     + P+  T+  ++ A + +  +  G+ +H  V+K  L
Sbjct: 159 SSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGL 218

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             D+FV   LV  YG  G + DA+ LF  +P  + V WN++I     +G           
Sbjct: 219 VEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD---------- 268

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
             D    PD  T V++L  C+    +  G +  H    +  +   L     ++D++ + G
Sbjct: 269 --DGAFMPDVATVVTVLPVCAREREIGVG-KGVHGWAVKLSLDKELVVNNALMDMYSKWG 325

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACR----IHGNMEL 520
            + +    I  +    +   W  ++G       IHG  +L
Sbjct: 326 CI-IDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDL 364


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 372/588 (63%), Gaps = 4/588 (0%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M ++G+ ++     S+L  C     I  G  +H +++K   E  +++   LI +Y K   
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RV D+M ER+VVSW ++I+ Y Q      A   F  M  +G  P+  T  ++ + 
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
               +  +  R +H  +++   F   + +G++++DMYAK G I  A  VF+GLP +DV+S
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTS-FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 179

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
              +I+GYAQ GL  EA+++F+ ++    +  N  TY S+L A S + AL  G ++H+ V
Sbjct: 180 CTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           ++  L F V +   L+DMY KCG +  +  +F  +P  + + WNA++  +  HG G +A+
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAV 298

Query: 420 NFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMV 477
             F+ M +E  V+PD +TF+++L+ CSH G+   G + ++ M+ ++ G +P ++HYGC+V
Sbjct: 299 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 358

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAG +  A  FI+ MP  P A+IWG+LLGACR+H N+ +G   + RL E++SEN G
Sbjct: 359 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 418

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV++SN+YA+ G+W+ V  VR L +++ + K PG S IE++  +  F+  +R+HP+ E+
Sbjct: 419 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 478

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           ++ ++R L+ K+K  GYVP+ S VL DV++++KE IL  HSE+LA+AFG+I +P  +P++
Sbjct: 479 VFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVR 538

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLR+C DCHN+ KF+S++  RE+ +RD NRFHH   G CSCGDYW
Sbjct: 539 IIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 225/393 (57%), Gaps = 7/393 (1%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL  +F  +  VL  C     + +G+++H  ++K  +E  V++   L+ +Y +      A
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R++ D+MP R+  SW AMISGY Q G A EAL +  EM + G + +  T A++L  C  S
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH  ++K   E ++FV ++L++MYAK G +  A RVFD + ERDVVS  +II
Sbjct: 125 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 184

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           + Y Q      A   F  +Q+ G++ + +T  S+ + ++ L    + R VH  ++R    
Sbjct: 185 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
              V++ N+++DMY+K G +  +  +F+ +P + VISWN ++ GY+++GL  EA+E+F++
Sbjct: 245 FY-VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 303

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGK 380
           M+E N++ P+  T++++L   SH G   +G++I   ++     F+  +    C+VD++G+
Sbjct: 304 MKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 363

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            GR+++A     ++P   ++  W +++    +H
Sbjct: 364 AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/615 (40%), Positives = 367/615 (59%), Gaps = 10/615 (1%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           S N +I   C+ G   +A+ +L +      S    T   ++  C    ++   L +H +I
Sbjct: 48  SNNQLIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRHI 103

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           + +G + + F++  LI MY+  G + +A +VFD+  +R +  WN++  A   +       
Sbjct: 104 LDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163

Query: 216 GFFTTMQQAGIQPDLLTLV-SLTSIVAQ---LNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
           G +  M + G++ D  T    L + VA    +N     + +H  + RRG +   V I   
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRG-YSSHVYIMTT 222

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEIN 330
           +VDMYA+ G ++ A  VF G+PV++V+SW+ +I  YA+NG A EA+  F +MM E  + +
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN  T VS+L A + + AL QG  IH  +++  L   + V + LV MYG+CG+++    +
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRV 342

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++     V WN++IS +G+HG G KA+  F +ML  G  P  +TFVS+L ACSH GLV
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG+R F  M  + GIKP ++HY CMVDL GRA  L  A   +Q+M   P   +WG+LLG
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           +CRIHGN+EL   AS RLF ++ +N G YVL+++IYA    W+ V  V+ L   RGL+K 
Sbjct: 463 SCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKL 522

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG   +EV  K+  F + +  +P  E+I+  L  L   MK  GY+P    VL ++E +EK
Sbjct: 523 PGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK 582

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E I+  HSE+LA+AFG+I++    PI+I KNLR+C DCH +TKFIS+  E+EI+VRD NR
Sbjct: 583 ERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNR 642

Query: 691 FHHFKDGICSCGDYW 705
           FH FK+G+CSCGDYW
Sbjct: 643 FHRFKNGVCSCGDYW 657



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 224/439 (51%), Gaps = 22/439 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I    + G+L +A+    Q +      P   T+  ++  C    +L D  ++H  +L  
Sbjct: 52  LIQSLCKEGKLKQAIRVLSQES-----SPSQQTYELLILCCGHRSSLSDALRVHRHILDN 106

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D F+A  L+ MY   G  + ARK+FD    R    WNA+      +G+  E L + 
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 118 DEMRLEGVSMDPITVASILPVCARSD----NILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            +M   GV  D  T   +L  C  S+    +++ G  IH ++ + G   ++++   L++M
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDM 226

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLL 231
           YA+FG + +A  VF  M  R+VVSW+++IA Y ++     A   F  M  +     P+ +
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFE 290
           T+VS+    A L      + +HG+I+RRG  ++ ++ + +A+V MY + G +     VF+
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRG--LDSILPVISALVTMYGRCGKLEVGQRVFD 344

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  +DV+SWN+LI+ Y  +G   +AI++F+ M   N  +P   T+VS+L A SH G + 
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM-LANGASPTPVTFVSVLGACSHEGLVE 403

Query: 351 QGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIIS 407
           +G ++   + ++  +   +    C+VD+ G+  R+D+A  +  Q  R+   P  W +++ 
Sbjct: 404 EGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMV-QDMRTEPGPKVWGSLLG 462

Query: 408 CHGIHGQGDKALNFFRQML 426
              IHG  + A    R++ 
Sbjct: 463 SCRIHGNVELAERASRRLF 481


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/757 (35%), Positives = 411/757 (54%), Gaps = 100/757 (13%)

Query: 47  GKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+ IH  ++K G  +  VF+  +LL++Y + G ++ A +LFD+MP++ + SWN ++S + 
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 106 QSGNAVEALDILDE-------------------------------MRLEGVSMDPITVAS 134
           ++GN   A  + DE                               M   G+S    T  +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----------FGMMRH-- 182
           +L  CA +  +  G  +H ++VK G    + V+N+L+NMYAK          F  MR   
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 183 -------------------ALRVFDQMMERDVVSWNSIIAAY-EQSNDPITAHGFFTTMQ 222
                              AL +FDQM + D+VSWNSII  Y  Q  D      F   ++
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK---- 278
            + ++PD  TL S+ S  A     +  + +H  I+R    +   + GNA++ MYAK    
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV-GNALISMYAKSGAV 329

Query: 279 -----------------------------LGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
                                        +G I+ A A+F+ L  +DV++W  +I GYAQ
Sbjct: 330 EVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQ 389

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL S+A+ +F++M       PN  T  ++L   S + +L  G ++HA  I+      V 
Sbjct: 390 NGLISDALVLFRLMIREGP-KPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVS 448

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           V   L+ MY + G I DA  +F  +     ++ W ++I     HG G++A+  F +ML  
Sbjct: 449 VGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRI 508

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
            ++PDHIT+V +L+AC+H GLV +G+ YF++M+    I+P   HY CM+DL GRAG L  
Sbjct: 509 NLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEE 568

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A+NFI+NMP+ PD   WG+LL +CR+H  ++L  VA+++L  +D  N G Y+ ++N  + 
Sbjct: 569 AYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSA 628

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
            GKWE   +VR   +D+ +KK  G+S +++ NKV IF   +  HP+ + IY  +  +  +
Sbjct: 629 CGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKE 688

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           +K +G++PD + VL D+E++ KE IL  HSE+LAIAF +I++P  + ++I KNLRVC DC
Sbjct: 689 IKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDC 748

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H+  ++IS + EREIIVRD+ RFHHFKDG CSC DYW
Sbjct: 749 HSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/519 (28%), Positives = 248/519 (47%), Gaps = 80/519 (15%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  Y   G    AV  F +  ++SG+ P  +TF  VL +C   + L  GKK+H  V+KL
Sbjct: 116 MIVGYNHLGLFKSAVHAFLRM-VSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKL 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS--------------- 102
           G    V VA SLL+MY + G + +A+ +FD M ++D+ +WN MIS               
Sbjct: 175 GQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALF 234

Query: 103 ----------------GYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDN 144
                           GYC  G  + AL+    M L+  S+ P   T+ S+L  CA  ++
Sbjct: 235 DQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM-LKSSSLKPDKFTLGSVLSACANRES 293

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------------------- 185
           +  G  IH +IV+  ++    V N LI+MYAK G +  A R                   
Sbjct: 294 LKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLL 353

Query: 186 --------------VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
                         +FD +  RDVV+W ++I  Y Q+     A   F  M + G +P+  
Sbjct: 354 DGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNY 413

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           TL ++ S+++ L    + + +H   +R    +  V +GNA++ MY++ G I  A  +F  
Sbjct: 414 TLAAVLSVISSLASLDHGKQLHAVAIRLEE-VSSVSVGNALITMYSRSGSIKDARKIFNH 472

Query: 292 L-PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +   +D ++W ++I   AQ+GL +EAIE+F+ M   N + P+  TYV +L A +HVG + 
Sbjct: 473 ICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRIN-LKPDHITYVGVLSACTHVGLVE 531

Query: 351 QGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           QG K +  ++KN    +   +   C++D+ G+ G +++A +    +P     V W +++S
Sbjct: 532 QG-KSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLS 590

Query: 408 CHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTAC 444
              +H   D A     ++L  D      ++   + L+AC
Sbjct: 591 SCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSAC 629



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 201/478 (42%), Gaps = 98/478 (20%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEF-NLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           +L    +S +   G  IH  I+KHGL +  +F++NNL+N+Y K G    A R+FD+M  +
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQ------------------------------ 223
              SWN+I++A+ ++ +  +A   F  + Q                              
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 224 -AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-- 280
            +GI P   T  ++ +  A        + VH F+++ G     V + N++++MYAK G  
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ-SGVVPVANSLLNMYAKCGDS 196

Query: 281 -----------------------------IINSACAVFEGLPVKDVISWNTLITGYAQNG 311
                                          + A A+F+ +   D++SWN++ITGY   G
Sbjct: 197 VMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQG 256

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK---------- 361
               A+E F  M + + + P++ T  S+L A ++  +L+ G +IHA +++          
Sbjct: 257 YDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVG 316

Query: 362 NCL-----------------------CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           N L                         +V   T L+D Y K G ID A ++F  +    
Sbjct: 317 NALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRD 376

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V W A+I  +  +G    AL  FR M+ EG +P++ T  ++L+  S    +  G++  H
Sbjct: 377 VVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ-LH 435

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +         +     ++ ++ R+G +  A     ++    D   W +++ +   HG
Sbjct: 436 AVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/694 (39%), Positives = 401/694 (57%), Gaps = 19/694 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL P+  +F  +L +C    +L   + IH  V +LGF  DV VA +L+ MY R G  + +
Sbjct: 228 GLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDES 287

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT-VASILPVCAR 141
             +F+ M VR+  SWNAMI+ + Q G+   A  I   M+ EG   + IT V ++   C+ 
Sbjct: 288 IAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSS 347

Query: 142 SDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           S   L     +H +I   GLE ++ V   L+ MY   G +  A   FD +  +++VSWN+
Sbjct: 348 SSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNA 407

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           ++ AY  +     A   F  M++  + P+    VS  +++    D   +RS+H  ++  G
Sbjct: 408 MLTAYGDNGRAREAMELFAAMKRQSLAPNK---VSYLAVLGCCEDVSEARSIHAEVVGNG 464

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F ++  I N VV M+A+ G +  A A F+   VKD +SWNT +   +       AI  F
Sbjct: 465 LFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAF 524

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYG 379
             M+      P++ T VS++   + +G L  G  I  ++     +  DV V + +++M  
Sbjct: 525 YTMQH-EGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVA 583

Query: 380 KCGR-IDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHI 435
           KCG  +D+   LF ++P  R   V WN +I+ +  HG G KAL  FR M     VRPD  
Sbjct: 584 KCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSS 643

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQ 494
           TFVS+L+ CSH+GLV +G   F + +E  GI+   ++HY C+VD+ GR G+L  A +FI+
Sbjct: 644 TFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIR 703

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSENVGYYVLMSNIYANVGKWE 553
            MP+  D+ +W +LLGAC  +G++E G  A+    E+  S++VGY VL SNIYA  G+WE
Sbjct: 704 KMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVL-SNIYAAAGRWE 762

Query: 554 GVDEVRS-LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
               VR  +A  R  K+ PG SSI V N+V  F+  +R+HP+ ++IY EL  L   ++  
Sbjct: 763 DSIRVREDMAERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREA 822

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVPD   VL DVEE++KE +L  HSE+LAIAFG+IS P +  I++ KNLRVC DCH  T
Sbjct: 823 GYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTAT 882

Query: 673 KFISQITEREIIVRDSNRFHHF-KDGICSCGDYW 705
           KFI+++T+REI VRD NRFHHF KDG CSCGDYW
Sbjct: 883 KFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/581 (26%), Positives = 260/581 (44%), Gaps = 67/581 (11%)

Query: 28  RPDFYTFPPVLKACRN---------LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           RP+  T   VL A  +             + +H  +     E D+FVA +LL  Y + G 
Sbjct: 122 RPNRLTIIAVLGAIASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGC 181

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV--EALDILDEMRLEGVSMDPITVASIL 136
              A ++F  + V D   WNA I   C   +     AL ++  M LEG+  +  +  +IL
Sbjct: 182 VESALEVFSRIQVPDLICWNAAIMA-CAGNDERPDRALLLVRRMWLEGLLPNRASFVAIL 240

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             C    ++     IH  + + G   ++ V+  L+ MY + G +  ++ VF+ M  R+ V
Sbjct: 241 SSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHV 300

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL--TSIVAQLNDCRNSRSVHG 254
           SWN++IAA+ Q      A   +  MQQ G +P+ +T V+    +  +   D   S ++HG
Sbjct: 301 SWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHG 360

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +I   G    DV++G A+V MY   G I+ A A F+ +P K+++SWN ++T Y  NG A 
Sbjct: 361 WIACAG-LEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAR 419

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDVFVATC 373
           EA+E+F  M+    + PN+ +Y+++L     V   R    IHA V+ N L   +  +A  
Sbjct: 420 EAMELFAAMKR-QSLAPNKVSYLAVLGCCEDVSEAR---SIHAEVVGNGLFAQESSIANG 475

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           +V M+ + G +++AM+ F       SV WN  ++          A+  F  M  EG RPD
Sbjct: 476 VVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPD 535

Query: 434 HITFVSLLTACSHSGL-------------------------------------VSEGQRY 456
             T VS++  C+  G                                      V E +R 
Sbjct: 536 KFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERL 595

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGH----LGMAHNFIQNMPVRPDASIWGALLGAC 512
           F  M ++   +  L  +  M+  + + GH    L +     Q   VRPD+S + ++L  C
Sbjct: 596 FARMPDD---RKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGC 652

Query: 513 RIHGNMELGA---VASDRLFEVDSENVGYYVLMSNIYANVG 550
              G +E G      +  +  ++ + V +Y  + ++   +G
Sbjct: 653 SHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMG 693



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 212/427 (49%), Gaps = 20/427 (4%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T   +L+ C    +L  G+++H  ++K G   +  +   L+ MY +    + A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM---DPITVASILPVCARSDNIL 146
             R   +WN +I+   QS  A    D+   M+LE  +    + +T+ ++L   A  D   
Sbjct: 86  RSRGIATWNTLIAA--QSSPAA-VFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 147 ------SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
                    ++H  I    LE +LFV+  L++ Y K G +  AL VF ++   D++ WN+
Sbjct: 143 SSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNA 202

Query: 201 IIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            I A   +++ P  A      M   G+ P+  + V++ S     +    +RS+H  +   
Sbjct: 203 AIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEEL 262

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F+ DV++  A+V MY + G ++ + AVFE + V++ +SWN +I  +AQ G  S A  +
Sbjct: 263 G-FLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAI 321

Query: 320 FQMMEECNEINPNQGTYVSILPAY--SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +  M++     PN+ T+V+ L A   S    L +   +H  +    L  DV V T LV M
Sbjct: 322 YWRMQQ-EGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTM 380

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           YG  G ID A + F  +P  + V WNA+++ +G +G+  +A+  F  M  + + P+ +++
Sbjct: 381 YGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSY 440

Query: 438 VSLLTAC 444
           +++L  C
Sbjct: 441 LAVLGCC 447



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 207/449 (46%), Gaps = 31/449 (6%)

Query: 129 PI-TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           PI T+A +L  C    ++  G  +H  IVK GL  N  + N L+ MY+K   +  A   F
Sbjct: 23  PIETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAF 82

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLN 244
             +  R + +WN++IAA    + P      +T M   ++A  +P+ LT++++   +A  +
Sbjct: 83  SALRSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGD 139

Query: 245 DCR------NSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                     +R VH  I  RG  +E D+ +  A++D Y K G + SA  VF  + V D+
Sbjct: 140 PSSSSSSRAQARIVHDDI--RGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDL 197

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I WN  I   A N    +   +         + PN+ ++V+IL +     +L     IHA
Sbjct: 198 ICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHA 257

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RV +     DV VAT LV MYG+CG +D+++++F  +   + V WNA+I+     G    
Sbjct: 258 RVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSA 317

Query: 418 ALNFFRQMLDEGVRPDHITFVSLL-TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           A   + +M  EG RP+ ITFV+ L  ACS S          H      G++  +     +
Sbjct: 318 AFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTAL 377

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA----CRIHGNMELGAVASDRLFEVD 532
           V ++G  G +  A      +P +   S W A+L A     R    MEL   A+ +   + 
Sbjct: 378 VTMYGSTGAIDRARAAFDAIPAKNIVS-WNAMLTAYGDNGRAREAMEL--FAAMKRQSLA 434

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSL 561
              V Y  ++       G  E V E RS+
Sbjct: 435 PNKVSYLAVL-------GCCEDVSEARSI 456


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 397/721 (55%), Gaps = 78/721 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDE 119
           D     +L+  YC  G   + R++F+  P+  RDS  +NAMI+GY  +G+   AL++   
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 120 MRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAKF 177
           MR +    D  T  S+L        N      +H  +VK G+   +  V N L+++Y K 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 178 G--------MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-------- 221
                     M  A ++FD+M +RD ++W ++I  Y +++D   A   F  M        
Sbjct: 198 ASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 222 -------------QQA----------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
                        Q+A          GIQ D +T  ++ S  A +   +  + VH +I++
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK 317

Query: 259 RGWFMED---VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY-------- 307
                     + + NA++ +Y K   ++ A  +F  +PV+++I+WN +++GY        
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 308 -----------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
                                  AQNG   E +++F+ M   +   P    +   L A S
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR-LDGFEPCDFAFAGALTACS 436

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +GAL  G ++HA+++       + V   ++ MY KCG ++ A S+F  +P    V WN+
Sbjct: 437 VLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNS 496

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+  G HG G KA+  F QML EGV PD ITF+++LTACSH+GLV +G+ YF+ M E +
Sbjct: 497 MIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESY 556

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P   HY  MVDLF RAG    A   I +MP +P A +W ALL  CRIHGNM+LG  A
Sbjct: 557 GITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEA 616

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           +++LF++  +N G YVL+SNIYA+VG+W  V +VR L RD+ ++K P  S IEV NKV +
Sbjct: 617 AEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHV 676

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F   +  HP+   +Y  L  L  +MK LGY+PD  FVL D+E ++KEH L++HSE+LA+ 
Sbjct: 677 FMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVG 736

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FGI+  PP + +++FKN+R+CGDCHN  KF+S++  REIIVRD  RFHHFK+G CSC DY
Sbjct: 737 FGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDY 796

Query: 705 W 705
           W
Sbjct: 797 W 797



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 142/350 (40%), Gaps = 84/350 (24%)

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL----- 303
           +R+VH  ++  G+      + N +++MY K   +  A  +FE +P  D I+  TL     
Sbjct: 32  ARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYC 90

Query: 304 ----------------------------ITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
                                       ITGYA NG    A+E+F+ M   ++  P+  T
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRR-DDFRPDDFT 149

Query: 336 YVSILPAYS-HVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGK--------CGRID 385
           + S+L A    VG  +Q  ++H  V+K  + C    V   L+ +Y K        C  + 
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMV 209

Query: 386 DAMSLFYQVPRSSSV-------------------------------PWNAIISCHGIHGQ 414
            A  LF ++P+   +                                WNA+IS +   G 
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGC 269

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPH---- 469
             +AL   R+M   G++ D IT+ ++++AC++ G    G Q + ++++ E  + P+    
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNE--LNPNHSFC 327

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           L     ++ L+ +   +  A      MPVR +   W A+L      G ME
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/734 (36%), Positives = 416/734 (56%), Gaps = 45/734 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG----KKIHCSVLK 56
           MI+   R      AV  F +  L   + P  +T   V  AC NL++G    K++H  VL+
Sbjct: 157 MINAACRFEEWELAVHLF-RLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLR 215

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G +W  F   +L+ MY + G    A+ LFD    +D  SWN +IS   Q+    EAL  
Sbjct: 216 NG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLY 274

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYA 175
           L  M   GV  + +T+AS+LP C+  + +  G  IH +++  + L  N FV   L++MY 
Sbjct: 275 LHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYC 334

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLV 234
                     VFD M  R +  WN++IA Y ++     A   F  M  + G+ P+ +TL 
Sbjct: 335 NCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLS 394

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+     +     +   +H  +++ G F +D  + NA++DMY+++G I  A ++F  +  
Sbjct: 395 SVLPACVRCESFLDKEGIHSCVVKWG-FEKDKYVQNALMDMYSRMGRIEIARSIFGSMNR 453

Query: 295 KDVISWNTLITGYA---------------QNGLASEAIEVFQMMEECNE--INPNQGTYV 337
           KD++SWNT+ITGY                Q G A   I  F   E+     + PN  T +
Sbjct: 454 KDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLM 513

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++LP  + + AL +G +IHA  +K  L  DV V + LVDMY KCG ++ + ++F Q+   
Sbjct: 514 TVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR 573

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-----VRPDHITFVSLLTACSHSGLVSE 452
           + + WN +I  +G+HG+G++AL  FR+M++EG     +RP+ +T++++  + SHSG+V E
Sbjct: 574 NVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDE 633

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR-PDASIWGALLGA 511
           G   F+ M+ + GI+P   HY C+VDL GR+G +  A+N I+ MP        W +LLGA
Sbjct: 634 GLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGA 693

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+E+G +A+  LF +D   + Y    S +   +             +++G++K P
Sbjct: 694 CKIHQNLEIGEIAAKNLFVLDPNVLDYGTKQSMLGRKM-------------KEKGVRKEP 740

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S IE  ++V  F  G+ +HP+ +++++ L  L+ +MK  GYVPD S VL +V E+EKE
Sbjct: 741 GCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKE 800

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
            +L  HSERLAIAFG++++ P + I++ KNLRVC DCH  TKFIS+I +REII+RD  RF
Sbjct: 801 TMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRF 860

Query: 692 HHFKDGICSCGDYW 705
           HHF++G CSCGDYW
Sbjct: 861 HHFRNGTCSCGDYW 874



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 165/584 (28%), Positives = 288/584 (49%), Gaps = 38/584 (6%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y   +T+G+ PD + FP VLKA   + D   GK++H  V K G      V  SL++MY +
Sbjct: 73  YTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGK 132

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G  + AR++FD++  RD  SWN+MI+  C+      A+ +   M LE V     T+ S+
Sbjct: 133 CGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSV 192

Query: 136 LPVCARSDNILSGLL----IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
              C+   N+++GLL    +H +++++G ++  F +N L+ MYAK G +  A  +FD   
Sbjct: 193 AHACS---NLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFD 248

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++D+VSWN+II++  Q++    A  +   M Q+G++P+ +TL S+    + L      + 
Sbjct: 249 DKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKE 308

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H F++     +E+  +G A+VDMY           VF+G+  + +  WN +I GY +N 
Sbjct: 309 IHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNE 368

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EAIE+F  M     ++PN  T  S+LPA     +      IH+ V+K     D +V 
Sbjct: 369 FDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQ 428

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM------ 425
             L+DMY + GRI+ A S+F  + R   V WN +I+ + + G+ D ALN    M      
Sbjct: 429 NALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAE 488

Query: 426 -----LDE-------GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
                 D+        ++P+ +T +++L  C+    + +G+   H    +  +   +   
Sbjct: 489 HRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQMLSKDVAVG 547

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             +VD++ + G L ++    + M VR +   W  L+ A  +HG  E       R+ E   
Sbjct: 548 SALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHGKGEEALKLFRRMVEEGD 606

Query: 534 EN-------VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            N       V Y  + +++  +    EG++   ++    G++ T
Sbjct: 607 NNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPT 650



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 206/425 (48%), Gaps = 15/425 (3%)

Query: 92  RDSGSWNAMISGYCQSGNAV-EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           R    W + +    QS +   +A+     M   GV  D     ++L   A   ++  G  
Sbjct: 47  RLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQ 106

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H ++ K G      V N+L+NMY K G +  A RVFD++  RD VSWNS+I A  +  +
Sbjct: 107 LHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEE 166

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL-NDCRNSRSVHGFIMRRG-WFMEDVII 268
              A   F  M    + P   TLVS+    + L N     + VH F++R G W       
Sbjct: 167 WELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDW---RTFT 223

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            NA+V MYAKLG +  A  +F+    KD++SWNT+I+  +QN    EA+    +M +   
Sbjct: 224 NNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSG- 282

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDA 387
           + PN  T  S+LPA SH+  L  G +IHA V+  N L  + FV   LVDMY  C + +  
Sbjct: 283 VRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKG 342

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTAC-- 444
             +F  + R +   WNA+I+ +  +    +A+  F +M+ E G+ P+ +T  S+L AC  
Sbjct: 343 RLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVR 402

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
             S L  EG    H    ++G +        ++D++ R G + +A +   +M  R D   
Sbjct: 403 CESFLDKEG---IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVS 458

Query: 505 WGALL 509
           W  ++
Sbjct: 459 WNTMI 463


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 409/771 (53%), Gaps = 79/771 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVL----K 56
           ++S Y + GR  +A++ F     +    P+ +TF   +K+C  L    ++   +L    K
Sbjct: 132 LMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGAL-GWHEVALQLLGLLTK 190

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARK-------------------------------L 85
            GF+ D  VA  ++ M+ R G  + A K                               L
Sbjct: 191 FGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALEL 250

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           F+ MP RD  SWN M+S   QSG A EAL +  +M   GV +D  T  S L  CA+  ++
Sbjct: 251 FESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSL 310

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  +++     + +V++ ++ +YAK G  + A RVF  + +R+ VSW  +I  +
Sbjct: 311 GWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGF 370

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q      +   F  M+   +  D   L ++ S  +   D   +R +H   ++ G     
Sbjct: 371 LQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSG-HTRA 429

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V+I N+++ MYAK G + +A ++F  +  +D++SW  ++T Y+Q G   +A E F  M  
Sbjct: 430 VVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMST 489

Query: 326 CNEIN-------------------------------PNQGTYVSILPAYSHVGALRQGIK 354
            N I                                P+  TYV++    + +GA + G +
Sbjct: 490 RNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQ 549

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           I    +K  L  D  V   ++ MY KCGRI +A  +F  + R   V WNA+I+ +  HG 
Sbjct: 550 ITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGM 609

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A+  F  ML +G +PD+I++V++L++CSHSGLV EG+ YF M++ +  + P L+H+ 
Sbjct: 610 GKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFS 669

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL  RAG+L  A N I  MP++P A +WGALL AC+ HGN EL  +A+  LF++DS 
Sbjct: 670 CMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSP 729

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G Y+L++ IYA+ GK     +VR L RD+G+KK PG+S +EV NKV +F   + +HP+
Sbjct: 730 DSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQ 789

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I ++L  L  K+  LGYV  +S   +             HSE+LA+AFGI++ P   
Sbjct: 790 VIAIREKLDELMEKIAQLGYVRTESLRSE-----------IHHSEKLAVAFGIMNLPAWM 838

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI I KNLR+CGDCH   K IS +T RE ++RD+ RFHHFK G CSCGDYW
Sbjct: 839 PIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 209/460 (45%), Gaps = 41/460 (8%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E +V     +++ Y + G  + A +LF  MP RD  SWN ++SGY QSG  ++A++    
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 120 MRLEGVSM-DPITVASILPVCA--------------------RSDNILSGLLIHLYIVKH 158
           MR  G S+ +  T    +  C                     + D  ++  ++ +++   
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 159 GLEF-----------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
            ++F            +F  N+++  YAK   + HAL +F+ M ERDVVSWN +++A  Q
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           S     A      M   G++ D  T  S  +  A+L+     + +H  ++R    + D  
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCI-DPY 330

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + +A+V++YAK G    A  VF  L  ++ +SW  LI G+ Q G  SE++E+F  M    
Sbjct: 331 VASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQM-RAE 389

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            +  +Q    +I+   S+   +    ++H+  +K+     V ++  L+ MY KCG + +A
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            S+F  +     V W  +++ +   G   KA  FF  M    V    IT+ ++L A    
Sbjct: 450 ESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQH 505

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           G   +G + +  M  E  + P    Y   V LF     +G
Sbjct: 506 GAEEDGLKMYSAMLTEKDVIPDWVTY---VTLFRGCADMG 542


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/574 (41%), Positives = 361/574 (62%), Gaps = 5/574 (0%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           ++L  C   + +  G +IH  ++      +L + N L+N+YAK G + +A ++FD+M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL--NDCRNSRS 251
           DVV+W ++I  Y Q + P  A      M + G++P+  TL SL    + +   D    R 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG  +R G +  +V +  A++DMYA+   +  A  +F+ +  K+ +SWN LI GYA+ G
Sbjct: 140 LHGLCLRYG-YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              +A  +F  M   N + P   TY S+L A + +G+L QG  +HA +IK       FV 
Sbjct: 199 QGDKAFCLFSNMLREN-VKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG 257

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             L+DMY K G I+DA  +F ++ +   V WN++++ +  HG G  AL  F +ML   + 
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ ITF+ +LTACSH+GL+ EG+ YF MM++ + ++P + HY  MVDL GRAGHL  A  
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI  MP++P A++WGALLGACR+H NMELG  A++ +FE+DS   G +VL+ NIYA  G+
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGR 436

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W    +VR + ++ G+KK P  S +E+ N+V +F   +  HP+  +I++    ++ K+K 
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKE 496

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
           +GYVPD S VL  +++ E+E  L  HSE+LA+AF ++++PP S I+I KN+R+CGDCH+ 
Sbjct: 497 IGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSA 556

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KF+S++ EREIIVRD+NRFHHF DG CSC DYW
Sbjct: 557 FKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 208/382 (54%), Gaps = 8/382 (2%)

Query: 37  VLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +LK C +L    +GK IH  +L   F  D+ +  +LL++Y + G    ARKLFD+M  RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA--RSDNILSGLLI 151
             +W A+I+GY Q     +AL +L EM   G+  +  T+AS+L   +   S ++L G  +
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H   +++G + N++VS  +++MYA+   +  A  +FD M+ ++ VSWN++IA Y +    
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F+ M +  ++P   T  S+    A +      + VH  +++ G  +    +GN 
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV-AFVGNT 259

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           ++DMYAK G I  A  VF+ L  +DV+SWN+++TGY+Q+GL   A++ F+ M     I P
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR-TRIAP 318

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N  T++ +L A SH G L +G      + K  +   +     +VD+ G+ G +D A+   
Sbjct: 319 NDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFI 378

Query: 392 YQVP-RSSSVPWNAIISCHGIH 412
            ++P + ++  W A++    +H
Sbjct: 379 SEMPIKPTAAVWGALLGACRMH 400



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 9/289 (3%)

Query: 23  LTSGLRPDFYTFPPVLKACR-----NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           L  GL+P+ +T   +LKA       +++ G+++H   L+ G++ +V+V+ ++L MY R  
Sbjct: 108 LRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCH 167

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               A+ +FD M  ++  SWNA+I+GY + G   +A  +   M  E V     T +S+L 
Sbjct: 168 HLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLC 227

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            CA   ++  G  +H  ++K G +   FV N L++MYAK G +  A +VFD++ +RDVVS
Sbjct: 228 ACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVS 287

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WNS++  Y Q      A   F  M +  I P+ +T + + +  +        R  H F M
Sbjct: 288 WNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGR--HYFDM 345

Query: 258 RRGWFMEDVIIGN-AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLI 304
            + + +E  I     +VD+  + G ++ A      +P+K   + W  L+
Sbjct: 346 MKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 5/208 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +I+ Y R G+  +A  C +   L   ++P  +T+  VL AC    +L  GK +H  ++K 
Sbjct: 190 LIAGYARKGQGDKAF-CLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKW 248

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +   FV  +LL MY + G    A+K+FD +  RD  SWN+M++GY Q G    AL   
Sbjct: 249 GEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRF 308

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM    ++ + IT   +L  C+ +  +  G      + K+ +E  +     ++++  + 
Sbjct: 309 EEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRA 368

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAA 204
           G +  A++   +M ++     W +++ A
Sbjct: 369 GHLDRAIQFISEMPIKPTAAVWGALLGA 396


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/771 (35%), Positives = 412/771 (53%), Gaps = 79/771 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           ++S Y +  R  + ++ F     +    P+ +TF  V+K+C  L   +++   +L L ++
Sbjct: 108 LMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGAL-GCRELAPQLLGLFWK 166

Query: 61  WDVF----VAASLLHMYCRFGLANVARKLF------------------------------ 86
           +D +    V  +L+ M+ R G  + A +LF                              
Sbjct: 167 FDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEY 226

Query: 87  -DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            +DM  RD  SWN MI+   QSG   EAL ++ EM  +GV +D  T  S L  CAR  ++
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  +++   + + +V++ LI +YAK G  + A RVF+ + +R+ VSW  +I   
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q      +   F  M+   +  D   L +L S      D    R +H   ++ G     
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-HNRA 405

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +++ N+++ +YAK G + +A  VF  +  +D++SW ++IT Y+Q G   +A E F  M+ 
Sbjct: 406 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDT 465

Query: 326 CN-------------------------------EINPNQGTYVSILPAYSHVGALRQGIK 354
            N                               ++ P+  TYV++    + +GA + G +
Sbjct: 466 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 525

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           I    +K  L  +V VA   + MY KCGRI +A  LF  +     V WNA+I+ +  HG 
Sbjct: 526 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGM 585

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A   F  ML +G +PD+I++V++L+ CSHSGLV EG+ YF MM    GI P L+H+ 
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAGHL  A + I  MP++P A +WGALL AC+IHGN EL  +A+  +FE+DS 
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G Y+L++ IY++ GK +   +VR L RD+G+KK PG+S +EV NKV +F   + +HP+
Sbjct: 706 DSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I ++L  L  K+  LGYV           E  +  I   HSE+LA+AFGI+S P   
Sbjct: 766 VIAIRNKLDELMEKIAHLGYVR---------TESPRSEI--HHSEKLAVAFGIMSLPAWM 814

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI I KNLR+CGDCH   K IS +T+RE ++RD  RFHHFK G CSCGDYW
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 194/447 (43%), Gaps = 44/447 (9%)

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E N+   N ++N YAK G +  A  +FD+M  RDV SWN++++ Y Q+   +     F +
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 221 MQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM---- 275
           M ++G   P+  T   +      L  CR        +  +  F  D  +  A+VDM    
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALG-CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 276 ---------------------------YAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
                                      YAKL  I+ A   FE +  +DV+SWN +I   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           Q+G   EA+ +   M     +  +  TY S L A + + +L  G ++HA+VI++    D 
Sbjct: 247 QSGRVREALGLVVEMHR-KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +VA+ L+++Y KCG   +A  +F  +   +SV W  +I     +    K++  F QM  E
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
            +  D     +L++ C +   +  G R  H +  + G    +     ++ L+ + G L  
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN 424

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYA 547
           A     +M  R D   W +++ A    GN+    + +   F+ +D+ N   +  M   Y 
Sbjct: 425 AEFVFSSMSER-DIVSWTSMITAYSQIGNI----IKAREFFDGMDTRNAITWNAMLGAYI 479

Query: 548 NVGKWE-GVDEVRSLARDRGLKKTPGW 573
             G  E G+    ++   + +  TP W
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDV--TPDW 504


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/713 (38%), Positives = 411/713 (57%), Gaps = 52/713 (7%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRD 93
           +L+ C+N+   K+IH  ++K G    VFV + L+H +C     G  + A  LF++     
Sbjct: 34  LLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIH-FCAVSPSGDLSYALSLFEENQQHH 92

Query: 94  SGS---WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             +   WN++I GY  S + + +L +   M   GV  +  T   +   C ++     G  
Sbjct: 93  KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQ 152

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMR----------------------------- 181
           +H + +K  L FN  V  ++I+MYA  G M                              
Sbjct: 153 LHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGC 212

Query: 182 --HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
              A R+FD++  +DVVSWN++I+ Y QS     A   F  MQ+A + P+  T+V +   
Sbjct: 213 LDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVV--- 269

Query: 240 VAQLNDCRNSRSVH-----GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
              L+ C ++RS       G  +R   F  ++ + NA++DMY K G  + A  +F+G+  
Sbjct: 270 ---LSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEE 326

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KDVISWNT+I GY+   L  EA+ +F++M   N + PN  T++ IL A + +GAL  G  
Sbjct: 327 KDVISWNTMIGGYSYLSLYEEALALFEVMLRSN-VKPNDVTFLGILHACACLGALDLGKW 385

Query: 355 IHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +HA + KN     +  + T L+DMY KCG I+ A  +F  +   +   WNA++S   +HG
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHG 445

Query: 414 QGDKALNFFRQMLDEGV-RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
             ++AL  F +M+++G+ RPD ITFV +L+AC+ +GLV  G +YF  M +++GI P L+H
Sbjct: 446 HAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQH 505

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           YGCM+DL  RA     A   ++NM + PD +IWG+LL AC+ HG +E G   ++RLF+++
Sbjct: 506 YGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLE 565

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            EN G +VL+SNIYA  G+W+ V  +R+   D+G+KK PG +SIE++  V  F  G++ H
Sbjct: 566 PENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFH 625

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+   IY  L  +   ++  G+VP+ S VL D++E+ KE  L+ HSE+LAI+FG+I + P
Sbjct: 626 PECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKP 685

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + I+I KNLRVCG+CH+ TK IS+I  REII RD NRFHHFKDG CSC D W
Sbjct: 686 GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 207/428 (48%), Gaps = 36/428 (8%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L  G++P+ +TFP + K+C   +   +GK++H   LKL   ++  V  S++HMY   G  
Sbjct: 123 LYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEM 182

Query: 80  NV-------------------------------ARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +                                AR+LFD++PV+D  SWNAMISGY QSG
Sbjct: 183 DFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSG 242

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              EA+    EM+   V  +  T+  +L  C  + +   G  I  ++  +G   NL ++N
Sbjct: 243 RFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTN 302

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            LI+MY K G    A  +FD + E+DV+SWN++I  Y   +    A   F  M ++ ++P
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP 362

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           + +T + +    A L      + VH +I +      +  +  +++DMYAK G I +A  V
Sbjct: 363 NDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERV 422

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F  +  +++ SWN +++G+A +G A  A+ +F  M       P+  T+V +L A +  G 
Sbjct: 423 FRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGL 482

Query: 349 LRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
           +  G +    +I++  +   +    C++D+  +  + ++A  L   +        W +++
Sbjct: 483 VDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLL 542

Query: 407 SCHGIHGQ 414
           S    HG+
Sbjct: 543 SACKAHGR 550



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 191/419 (45%), Gaps = 37/419 (8%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFD---QM 190
           L +  +  NI +   IH  I+K GL   +FV + LI+  A    G + +AL +F+   Q 
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQH 91

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            + +V  WNS+I  Y  S+ P+++   F+ M   G+QP+  T   L     +       +
Sbjct: 92  HKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGK 151

Query: 251 SVHGFIMRRGWF------------------------------MEDVIIGNAVVDMYAKLG 280
            +H   ++                                  + D +   A++  Y   G
Sbjct: 152 QLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQG 211

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            ++ A  +F+ +PVKDV+SWN +I+GY Q+G   EAI  F  M+E N + PN+ T V +L
Sbjct: 212 CLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN-VLPNKSTMVVVL 270

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A  H  +   G  I + V  N    ++ +   L+DMY KCG  D A  LF  +     +
Sbjct: 271 SACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVI 330

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            WN +I  +      ++AL  F  ML   V+P+ +TF+ +L AC+  G +  G+     +
Sbjct: 331 SWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYI 390

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            +      +   +  ++D++ + G +  A    ++M  R  AS W A+L    +HG+ E
Sbjct: 391 DKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAE 448



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 127/252 (50%), Gaps = 16/252 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MIS YV+ GR  EA+ CFY+    + + P+  T   VL AC   R+   GK I   V   
Sbjct: 234 MISGYVQSGRFEEAIVCFYEMQ-EANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDN 292

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ MYC+ G  ++AR+LFD +  +D  SWN MI GY       EAL + 
Sbjct: 293 GFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF 352

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN------LI 171
           + M    V  + +T   IL  CA    +  G  +H YI K     NL  S+N      LI
Sbjct: 353 EVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDK-----NLRNSSNASLWTSLI 407

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI-QPDL 230
           +MYAK G +  A RVF  M  R++ SWN++++ +        A   F+ M   G+ +PD 
Sbjct: 408 DMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDD 467

Query: 231 LTLVSLTSIVAQ 242
           +T V + S   Q
Sbjct: 468 ITFVGVLSACTQ 479


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/721 (36%), Positives = 397/721 (55%), Gaps = 78/721 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDE 119
           D     +L+  YC  G   + R++F+  P+  RDS  +NAMI+GY  +G+   AL++   
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 120 MRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAKF 177
           MR +    D  T  S+L        N      +H  +VK G+   +  V N L+++Y K 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 178 G--------MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-------- 221
                     M  A ++FD+M +RD ++W ++I  Y +++D   A   F  M        
Sbjct: 198 ASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 222 -------------QQA----------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
                        Q+A          GIQ D +T  ++ S  A +   +  + +H +I++
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK 317

Query: 259 RGWFMED---VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY-------- 307
                     + + NA++ +Y K   ++ A  +F  +PV+++I+WN +++GY        
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 308 -----------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
                                  AQNG   E +++F+ M   +   P    +   L A S
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR-LDGFEPCDFAFAGALTACS 436

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +GAL  G ++HA+++       + V   ++ MY KCG ++ A S+F  +P    V WN+
Sbjct: 437 VLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNS 496

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+  G HG G KA+  F QML EGV PD ITF+++LTACSH+GLV +G+ YF+ M E +
Sbjct: 497 MIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESY 556

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P   HY  MVDLF RAG    A   I +MP +P A +W ALL  CRIHGNM+LG  A
Sbjct: 557 GITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEA 616

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           +++LF++  +N G YVL+SNIYA+VG+W  V +VR L RD+ ++K P  S IEV NKV +
Sbjct: 617 AEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHV 676

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F   +  HP+   +Y  L  L  +MK LGY+PD  FVL D+E ++KEH L++HSE+LA+ 
Sbjct: 677 FMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVG 736

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FGI+  PP + +++FKN+R+CGDCHN  KF+S++  REIIVRD  RFHHFK+G CSC DY
Sbjct: 737 FGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDY 796

Query: 705 W 705
           W
Sbjct: 797 W 797



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 142/350 (40%), Gaps = 84/350 (24%)

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL----- 303
           +R+VH  ++  G+      + N +++MY K   +  A  +FE +P  D I+  TL     
Sbjct: 32  ARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYC 90

Query: 304 ----------------------------ITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
                                       ITGYA NG    A+E+F+ M   ++  P+  T
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRR-DDFRPDDFT 149

Query: 336 YVSILPAYS-HVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGK--------CGRID 385
           + S+L A    VG  +Q  ++H  V+K  + C    V   L+ +Y K        C  + 
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMV 209

Query: 386 DAMSLFYQVPRSSSV-------------------------------PWNAIISCHGIHGQ 414
            A  LF ++P+   +                                WNA+IS +   G 
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGC 269

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPH---- 469
             +AL   R+M   G++ D IT+ ++++AC++ G    G Q + ++++ E  + P+    
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNE--LNPNHSFC 327

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           L     ++ L+ +   +  A      MPVR +   W A+L      G ME
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAGRME 376


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/639 (39%), Positives = 377/639 (58%), Gaps = 4/639 (0%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           +L  Y + G     RK FD+MPV D  SWNA+I+ Y  + +          M L+G++  
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + ++  L  C  +  I  G  I L I+  G+E    V   L++MY K G    A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M  RDVV+W++++AAY ++  P  A G F  M   G+ P+ +TLVS     A L D R+
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
              +H  +  +G     V++G A+V++Y K G I +A   F  +  K+V++W+ +   YA
Sbjct: 181 GALMHQRVEAQG-IQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR--VIKNCLCF 366
           +N    +AI V   M+    + PN  T+VS+L A + + AL+QG +IH R  V+   L  
Sbjct: 240 RNDRNRDAIRVLHRMD-LEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLES 298

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV+V T LV+MY KCG +  A  +F ++     V WN++I+ +  HGQ +KAL  F +M 
Sbjct: 299 DVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMR 358

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            EG++P  ITF S+L ACSH+G++ +G+++F     + GI P  +H+GCMVDL GRAG +
Sbjct: 359 LEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWI 418

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             + + + +MP  P    W A LGACR + NM+    A++ LF++D      YVL+SN+Y
Sbjct: 419 VDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMY 478

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A  G+W  V  +R   +     K  G S IEV ++V  F +G+  HP+  +I+ EL+ LT
Sbjct: 479 AKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLT 538

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
             MK  GYVPD   VL DV+++ KE ++  HSE+LA+AF ++++P  SPI++ KNLRVC 
Sbjct: 539 KLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCN 598

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH  +KFIS++  REI+VRD NRFH F++G CSCGDYW
Sbjct: 599 DCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 228/460 (49%), Gaps = 16/460 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F++  L  G+ P        L AC   R +  G+ I  ++L  G E +  V  +L+ MY 
Sbjct: 48  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYG 107

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    A  +F  M  RD  +W+AM++ Y ++G+  EAL +  +M L+GV+ + +T+ S
Sbjct: 108 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 167

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
            L  CA   ++ SG L+H  +   G++  + V   L+N+Y K G +  A+  F Q++E++
Sbjct: 168 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKN 227

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+W++I AAY +++    A      M   G+ P+  T VS+    A +   +  R +H 
Sbjct: 228 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHE 287

Query: 255 FIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
                G  +E DV +  A+V+MY+K G +  A  +F+ +   D++ WN+LI   AQ+G  
Sbjct: 288 RTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQT 347

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVAT 372
            +A+E+F+ M     + P   T+ S+L A SH G L QG K     I +   F +     
Sbjct: 348 EKALELFERM-RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFG 406

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKAL----NFFRQMLD 427
           C+VD+ G+ G I D+  L   +P     V W A +     +   D+A+    N F+  LD
Sbjct: 407 CMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQ--LD 464

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              R  ++   ++    + +G  S+  R    MQ    +K
Sbjct: 465 PRKRAPYVLLSNMY---AKAGRWSDVARMRQAMQLFMTVK 501


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/669 (39%), Positives = 393/669 (58%), Gaps = 6/669 (0%)

Query: 41  CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMPVRDSGSWN 98
           C ++   K+ H  +L+     +   ++ L+        G  N ARKLF  M   D    N
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            MI GY +S N  EA+ +   M   GV +D  T   +L  CAR   +  G   H  ++K+
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G   +LFV N LI  Y   G    A  VFD+   RDVV+WN +I A+        A    
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 219 TTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
             M +   ++PD +T+VSL    AQL +    + +H +    G   E++ + NA++DMY 
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELG-LDENLRVNNAILDMYC 259

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K   I SA  VF  +  KDV+SW ++++G A++G   EA+ +FQ M+  N+I  ++ T V
Sbjct: 260 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQ-LNKIELDEITLV 318

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
            +L A +  GAL QG  IH  + K  +  D+ + T LVDMY KCG ID A+ +F ++   
Sbjct: 319 GVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           +   WNA+I    +HG G+ A++ F QM  + + PD +TF++LL ACSH+GLV EG   F
Sbjct: 379 NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF 438

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             M+ +F I+P ++HYGC+VDL  RA  +  A  FI+NMP++ ++ +W  LLGACR  G+
Sbjct: 439 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 498

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
            +L      R+ E++ ++ G YV++SN+YA V +W+   ++R   +++G++KTPG S IE
Sbjct: 499 FDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 558

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTS 636
           +N  +  F  G+R+H + E+IY  +  +T ++    G+VP  + VL D+EE+EKEH L  
Sbjct: 559 LNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFL 618

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LAIA G+IS+P  SPI+I KNLRVC DCH++ K  S++  REI+ RD +RFHHFK+
Sbjct: 619 HSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKE 678

Query: 697 GICSCGDYW 705
           G CSC D+W
Sbjct: 679 GSCSCMDFW 687



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 243/440 (55%), Gaps = 13/440 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y R     EAV  +Y F +  G+  D YT+P VL AC  L     G++ HC VLK 
Sbjct: 82  MIRGYARSQNPYEAVSLYY-FMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+FV  +L+  Y   G    A  +FD+  VRD  +WN MI+ +   G + +A D+L
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           DEM +L+ +  D +T+ S++P CA+  N+  G  +H Y  + GL+ NL V+N +++MY K
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCK 260

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A  VF+++ E+DV+SW S+++   +S     A   F  MQ   I+ D +TLV +
Sbjct: 261 CDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGV 320

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  AQ       + +H  ++ +     D+++  A+VDMYAK G I+ A  VF  + V++
Sbjct: 321 LSACAQTGALDQGKYIH-LLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 379

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V +WN LI G A +G   +AI +F  ME  +++ P+  T++++L A SH G + +G+ + 
Sbjct: 380 VFTWNALIGGLAMHGHGEDAISLFDQMEH-DKLMPDDVTFIALLCACSHAGLVDEGLAMF 438

Query: 357 ARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
            + +KN    +  +    C+VD+  +  ++DDA++    +P +++SV W  ++      G
Sbjct: 439 -QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 497

Query: 414 QGDKALNFFRQMLDEGVRPD 433
             D A    R++++  + PD
Sbjct: 498 HFDLAEKIGRRVIE--LEPD 515



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 177/364 (48%), Gaps = 8/364 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI+ ++  G   +A D   + T    LRPD  T   ++ AC    NL  GK +H    +L
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + ++ V  ++L MYC+      A+++F+ +  +D  SW +M+SG  +SG   EAL + 
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+L  + +D IT+  +L  CA++  +  G  IHL I K  +  +L +   L++MYAK 
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  AL+VF +M  R+V +WN++I           A   F  M+   + PD +T ++L 
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
              +         ++   +  +      +     VVD+  +   ++ A A  E +P+K +
Sbjct: 423 CACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKAN 482

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKI 355
            + W TL+ G  ++G   +  E  ++     E+ P+  G YV +   Y+ V      +K+
Sbjct: 483 SVLWATLL-GACRSGGHFDLAE--KIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKL 539

Query: 356 HARV 359
             ++
Sbjct: 540 RKQM 543


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 402/709 (56%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y +  R  EA + F       G+ PD  T   +L       ++ +  ++H  V+K+
Sbjct: 110 LIGGYAQHNRFLEAFNLFADMC-RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKV 168

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  + V  SLL  YC+     +A  LF  M  +D+ ++NA+++GY + G   +A+++ 
Sbjct: 169 GYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLF 228

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G      T A++L    + D+I  G  +H ++VK    +N+FV+N L++ Y+K 
Sbjct: 229 FKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKH 288

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++F +M E D +S+N +I     +     +   F  +Q            +L 
Sbjct: 289 DRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLL 348

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI A   +    R +H   +      E V++GN++VDMYAK      A  +F  L  +  
Sbjct: 349 SIAANSLNLEMGRQIHSQAIVTDAISE-VLVGNSLVDMYAKCDKFGEANRIFADLAHQSS 407

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  LI+GY Q GL  + +++F  M    +I  +  TY SIL A +++ +L  G ++H+
Sbjct: 408 VPWTALISGYVQKGLHEDGLKLFVEMHRA-KIGADSATYASILRACANLASLTLGKQLHS 466

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+I++    +VF  + LVDMY KCG I +A+ +F ++P  +SV WNA+IS +  +G G  
Sbjct: 467 RIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGH 526

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM+  G++P+ ++F+S+L ACSH GLV EG +YF+ M + + ++P  +HY  MV
Sbjct: 527 ALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMV 586

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D+  R+G    A   +  MP  PD  +W ++L +CRIH N EL   A+D+LF +    + 
Sbjct: 587 DMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDA 646

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  G+W+ V +V+   R+RG++K P +S +E+  K  +F   + +HP+ +
Sbjct: 647 APYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTK 706

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  +L  L  +M+  GY PD +  L +V+E+ K   L  HSER+AIAF +IS+P  SPI
Sbjct: 707 EITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPI 766

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K IS+I  REI VRDS+RFHHF DG CSC DYW
Sbjct: 767 LVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 229/456 (50%), Gaps = 4/456 (0%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +V    +++  Y + G  + AR LFD M  R   +W  +I GY Q    +EA ++  +M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G+  D IT+A++L      +++     +H ++VK G +  L V N+L++ Y K   + 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +F  M E+D V++N+++  Y +      A   F  MQ  G +P   T  ++ +   
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           Q++D    + VH F+++   F+ +V + NA++D Y+K   I  A  +F  +P  D IS+N
Sbjct: 252 QMDDIEFGQQVHSFVVKCN-FVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYN 310

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            LIT  A NG   E++E+F+ + +    +  Q  + ++L   ++   L  G +IH++ I 
Sbjct: 311 VLITCCAWNGRVEESLELFREL-QFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIV 369

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                +V V   LVDMY KC +  +A  +F  +   SSVPW A+IS +   G  +  L  
Sbjct: 370 TDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKL 429

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F +M    +  D  T+ S+L AC++   ++ G++  H      G   ++     +VD++ 
Sbjct: 430 FVEMHRAKIGADSATYASILRACANLASLTLGKQ-LHSRIIRSGCLSNVFSGSALVDMYA 488

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + G +  A    Q MPVR   S W AL+ A   +G+
Sbjct: 489 KCGSIKEALQMFQEMPVRNSVS-WNALISAYAQNGD 523


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/696 (38%), Positives = 402/696 (57%), Gaps = 35/696 (5%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L SGL PD   FP VLKAC  L+D   G+ +H  ++++G ++D++   +L++MY +    
Sbjct: 100 LASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL 159

Query: 80  NV-------ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
                    A ++ D+M  R      A +      GN  +   + D   +E  + D    
Sbjct: 160 KKSGRQRLGASQVLDEMTERTRSVRTASV----LVGN--QGRKVSD---IEAFNYD---- 206

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL---INMYAKFGMMRHALRVFDQ 189
                V  RS    + +L   Y  K   E+    + NL   I   +    +    ++F+ 
Sbjct: 207 -----VSCRSREFEAQVLEIDY--KPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEM 259

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M E+D+VSWN+IIA   ++            M  A ++PD  TL S+  ++A+  D    
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + +HG  +R+G   E V + ++++DMYAK   +  +  VF  L  +D ISWN++I G  Q
Sbjct: 320 KEIHGCSIRQGLDAE-VYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQ 378

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NGL  E ++ F+ M    +I P   ++ SI+PA +H+  L  G ++H  + +N    ++F
Sbjct: 379 NGLFDEGLKFFRQMLMA-KIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 437

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +A+ LVDMY KCG I  A  +F ++     V W A+I    +HG    A+  F QM  EG
Sbjct: 438 IASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEG 497

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           + P+++ F+++LTACSH+GLV E  +YF+ M  +FGI P ++HY  + DL GRAG L  A
Sbjct: 498 IEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
           ++FI  MP+ P  S+W  LL ACR+H N+++    ++R+ EVD +N G Y+L++NIY+  
Sbjct: 558 YDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAA 617

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
            +W+   + R+  R  G++KTP  S IEV NKV  F  G+ +HP YEKI + +  L   M
Sbjct: 618 RRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELM 677

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GYVPD S V  DVEE++K++++ SHSERLAI FGII++P  + I++ KNLRVC DCH
Sbjct: 678 EKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCH 737

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             TKFIS+I  REI+VRD++RFHHFK+G CSCGDYW
Sbjct: 738 TATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 235/493 (47%), Gaps = 37/493 (7%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            +++H  VLK      +   + LL +Y    L + + +LF+ +    + +W ++I  Y  
Sbjct: 27  AQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTS 85

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            G   ++L     M   G+  D     S+L  CA   ++  G  +H YI++ GL+F+L+ 
Sbjct: 86  HGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYT 145

Query: 167 SNNLINMYAKFGMMRHALR-------VFDQMME--RDVVSWNSIIAAYEQSNDPITAHGF 217
            N L+NMY+K   ++ + R       V D+M E  R V + + ++    +    I A  +
Sbjct: 146 GNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNY 205

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
             + +    +  +L +           D +               ME   +G  + D+  
Sbjct: 206 DVSCRSREFEAQVLEI-----------DYKPRSEYRE--------MEACNLGQQIKDISH 246

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
            +  ++S   +FE +P KD++SWNT+I G A+NGL  E + + + M   N + P+  T  
Sbjct: 247 SMS-VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN-LKPDSFTLS 304

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+LP  +    + +G +IH   I+  L  +V+VA+ L+DMY KC R+ D+  +F  +   
Sbjct: 305 SVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER 364

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + WN+II+    +G  D+ L FFRQML   ++P   +F S++ AC+H   +  G++  
Sbjct: 365 DGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-L 423

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H      G   ++     +VD++ + G++  A      M +R D   W A++  C +HG+
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGH 482

Query: 518 MELGAVASDRLFE 530
               A+ +  LFE
Sbjct: 483 ----ALDAIELFE 491



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 87/145 (60%), Gaps = 4/145 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+  V+ G   E +  F Q  L + ++P  Y+F  ++ AC +L     GK++H  + + 
Sbjct: 372 IIAGCVQNGLFDEGLKFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 430

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++F+A+SL+ MY + G    AR++FD M +RD  SW AMI G    G+A++A+++ 
Sbjct: 431 GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELF 490

Query: 118 DEMRLEGVSMDPITVASILPVCARS 142
           ++M+ EG+  + +   ++L  C+ +
Sbjct: 491 EQMKTEGIEPNYVAFMAVLTACSHA 515



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           Q  ++HA+V+K      +   + L+ +Y     + D++ LF  +    ++ W ++I C+ 
Sbjct: 26  QAQQLHAQVLK-FQASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYT 84

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            HG   K+L  F  ML  G+ PDH  F S+L AC+
Sbjct: 85  SHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA 119


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/702 (35%), Positives = 407/702 (57%), Gaps = 13/702 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGF-EWDVFVA 66
           L EA    Y+  L +G RPD +TFP V+K C  L    +G+  H + ++LG    +V+  
Sbjct: 87  LPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTG 146

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-- 124
            SLL  Y + G+   A ++FD MPVRD  +WN+M+ GY  +G    ALD   EM  EG  
Sbjct: 147 NSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMH-EGLQ 205

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           V  D + + + L  C     ++ G  +H Y+++HGLE ++ V  +L++MY K G +  A 
Sbjct: 206 VQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAE 265

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
            +F  M  R VV+WN +I  Y  +  P  A   F  M+  G Q +++T ++L +  AQ  
Sbjct: 266 GMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTE 325

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                RSVHG++ R   F+  V++  A+++MY+K+G + S+  +F  +  K ++SWN +I
Sbjct: 326 SSLYGRSVHGYVTR-SQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMI 384

Query: 305 TGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
             Y    + +EAI +F  +E  N+ + P+  T  +++PA+  +G LRQ  ++H+ +++  
Sbjct: 385 AAYMYKEMYNEAITLF--LELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLD 442

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              +  V   ++ MY +CG +  +  +F ++     + WN II  + IHGQG  AL  F 
Sbjct: 443 YGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFS 502

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M   G++P+  TFVS+LTACS SG+  EG   F++MQ ++GI P ++HYGCM DL GRA
Sbjct: 503 EMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRA 562

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L     FI+++P+ P   IWG+LL A R   ++++   A++R+FE++ +N G YV++S
Sbjct: 563 GDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILS 622

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           ++YA+ G+WE V  +RS   ++GL++T   S +E++     F  G+ THP+ + I++   
Sbjct: 623 SMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSD 682

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            L+ K+    Y  + S  +       +  I   HS RLA+ FG+ISS  ++PI + KN+R
Sbjct: 683 VLSRKIGETDYPRNLSDPISLT--SRRTIIPNKHSVRLAVVFGLISSEARAPILVKKNVR 740

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +C  CH+  K IS+ + R I+V D+N +H F DG C CGDYW
Sbjct: 741 ICNHCHHALKLISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 4/344 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +L+  +A  G M  AL         D    N +I  +  +  P  A   +  M  AG +
Sbjct: 47  KSLVLSHAAAGRMHDALAAVRS--SPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGAR 104

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  T   +    A+L      R+ H   +R G    +V  GN+++  YAKLG++  A  
Sbjct: 105 PDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAER 164

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF+G+PV+D+++WN+++ GY  NGL + A++ F+ M E  ++  +    ++ L A     
Sbjct: 165 VFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDS 224

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL QG ++HA VI++ L  DV V T L+DMY KCG I  A  +F  +P  + V WN +I 
Sbjct: 225 ALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIG 284

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            + ++G  ++A + F QM  EG + + +T ++LL AC+ +     G R  H         
Sbjct: 285 GYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYG-RSVHGYVTRSQFL 343

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           PH+     +++++ + G +  +      M  +   S W  ++ A
Sbjct: 344 PHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVS-WNNMIAA 386


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 405/716 (56%), Gaps = 13/716 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS +       +AV+ F Q  L  G+ P+ Y F  V++AC        G  +   VLK 
Sbjct: 126 IISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKT 185

Query: 58  G-FEWDVFVAASLLHMY---CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
           G F+  V V   L+ M+   C       ARK+FD M  ++  +W  MI+   Q G   EA
Sbjct: 186 GYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEA 245

Query: 114 LDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           +D+  EM +  G   D  T+  ++ VCA    +  G  +H ++++ GL  +L V  +L++
Sbjct: 246 IDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVD 305

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG---FFTTMQQAGIQPD 229
           MYAK G+++ A +VFD M E +V+SW +++  Y +            F   + Q G+ P+
Sbjct: 306 MYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPN 365

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T   +    A L D      VHG  ++ G    D + GN +V +YAK G + SA   F
Sbjct: 366 CFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCV-GNGLVSVYAKSGRMESARKCF 424

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           + L  K+++S   +     ++   +   ++ + +E       +  TY S+L   + +G +
Sbjct: 425 DVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGS-GVSSFTYASLLSGAACIGTI 483

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
            +G +IHA V+K     D+ V   L+ MY KCG  + A+ +F  +   + + W +II+  
Sbjct: 484 GKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGF 543

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
             HG   KAL  F  ML+ GV+P+ +T++++L+ACSH GL+ E  ++F  M++  GI P 
Sbjct: 544 AKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPR 603

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HY CMVDL GR+G L  A  FI +MP   DA +W   LG+CR+H N +LG  A+  + 
Sbjct: 604 MEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMIL 663

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           E +  +   Y+L+SN+YA  G+WE V  +R   + + + K  G S IEV N+V  F+ G+
Sbjct: 664 EREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGD 723

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
             HPK ++IY++L  L  K+K++GYVP+  FVL DVE+++KE  L  HSE+LA+AF +IS
Sbjct: 724 TLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALIS 783

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +P   PI++FKNLRVCGDCH   K+IS ++ REI+VRD+NRFHH KDG CSC DYW
Sbjct: 784 TPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 175/349 (50%), Gaps = 11/349 (3%)

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q   A+  L++ D        +  IT + +L  C R+ N   G L+H  +    L  +  
Sbjct: 31  QLHKAITTLNLTDTESTHNNKL--ITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTL 88

Query: 166 VSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTT-MQ 222
           + N+LI +Y+K      A  +F  M   +RDVVS++SII+ +  + + + A   F   + 
Sbjct: 89  LLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLL 148

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK---L 279
           Q G+ P+     ++     +    +    + GF+++ G+F   V +G  ++DM+ K   L
Sbjct: 149 QDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSL 208

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
             + SA  VF+ +  K+V++W  +IT  AQ G   EAI++F  M   +   P++ T   +
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           +   + +  L  G ++H+ VI++ L  D+ V   LVDMY KCG + +A  +F  +   + 
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 400 VPWNAIISCH--GIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACS 445
           + W A+++ +  G  G   +A+  F  ML + GV P+  TF  +L AC+
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 155/339 (45%), Gaps = 22/339 (6%)

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH-GFIMRRGWFM 263
           +   N+P   H   TT+     +      +  +S++  L  C  +++ H G ++      
Sbjct: 23  FNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLL--LKQCIRTKNTHLGKLLHHKLTT 80

Query: 264 E----DVIIGNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAI 317
                D ++ N+++ +Y+K     +A ++F+ +    +DV+S++++I+ +A N    +A+
Sbjct: 81  SNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAV 140

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLV 375
           E+F  +   + + PN+  + +++ A    G  + G+ +   V+K    FD  V V   L+
Sbjct: 141 EMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGY-FDSHVCVGCELI 199

Query: 376 DMYGK---CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVR 431
           DM+ K      ++ A  +F ++   + V W  +I+    +G  D+A++ F +ML   G  
Sbjct: 200 DMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYV 259

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PD  T   L++ C+    +S G+   H      G+   L     +VD++ + G +  A  
Sbjct: 260 PDRFTLTGLISVCAEIQFLSLGKE-LHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARK 318

Query: 492 FIQNMPVRPDASIWGALL-GACRIHGNMELGAVASDRLF 529
               M      S W AL+ G  R  G  E  A+   R+F
Sbjct: 319 VFDGMREHNVMS-WTALVNGYVRGGGGYEREAM---RMF 353


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/627 (39%), Positives = 373/627 (59%), Gaps = 16/627 (2%)

Query: 92  RDSGS----WNAMISGYC---------QSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
           RD GS    W    S +C          S N+   L +LD +    +  D     ++L  
Sbjct: 24  RDLGSFRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKR 83

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C +   +  G L+H +++    + +L + N+L+ MYA+ G +  A R+FD+M  RD+VSW
Sbjct: 84  CTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSW 143

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
            S+I  Y Q++    A   F  M   G +P+  TL SL      +      R +H    +
Sbjct: 144 TSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWK 203

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G    +V +G+++VDMYA+ G +  A  VF+ L  K+ +SWN LI GYA+ G   EA+ 
Sbjct: 204 YGCH-SNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALA 262

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F  M+      P + TY ++L + S +G L QG  +HA ++K+      +V   L+ MY
Sbjct: 263 LFVRMQR-EGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMY 321

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            K G I DA  +F ++ +   V  N+++  +  HG G +A   F +M+  G+ P+ ITF+
Sbjct: 322 AKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFL 381

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S+LTACSH+ L+ EG+ YF +M++ + I+P + HY  +VDL GRAG L  A +FI+ MP+
Sbjct: 382 SVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPI 440

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P  +IWGALLGA ++H N E+GA A+ R+FE+D    G + L++NIYA+ G+WE V +V
Sbjct: 441 EPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKV 500

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R + +D G+KK P  S +EV N V +F   +  HP+ EKI+     L  K+K +GYVPD 
Sbjct: 501 RKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDT 560

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
           S VL  V++ EKE  L  HSE+LA++F ++++PP S I+I KN+RVCGDCH+  K++S +
Sbjct: 561 SHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLV 620

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            +REIIVRD+NRFHHF DG CSCGDYW
Sbjct: 621 VKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 205/390 (52%), Gaps = 6/390 (1%)

Query: 27  LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L PD   +  +LK C  L    +GK +H  VL   F+ D+ +  SLL MY R G    AR
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           +LFD+MP RD  SW +MI+GY Q+  A +AL +   M  +G   +  T++S++  C    
Sbjct: 130 RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA 189

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +   G  IH    K+G   N+FV ++L++MYA+ G +  A+ VFD++  ++ VSWN++IA
Sbjct: 190 SYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIA 249

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y +  +   A   F  MQ+ G +P   T  +L S  + +      + +H  +M+    +
Sbjct: 250 GYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL 309

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               +GN ++ MYAK G I  A  VF+ L   DV+S N+++ GYAQ+GL  EA + F  M
Sbjct: 310 VGY-VGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEM 368

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                I PN  T++S+L A SH   L +G      + K  +   V     +VD+ G+ G 
Sbjct: 369 IRFG-IEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGL 427

Query: 384 IDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
           +D A S   ++P   +V  W A++    +H
Sbjct: 428 LDQAKSFIEEMPIEPTVAIWGALLGASKMH 457


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/742 (35%), Positives = 408/742 (54%), Gaps = 39/742 (5%)

Query: 1   MISVYVRCGRLSEAVDCF------------------------------YQFTLTSG--LR 28
           MI++Y +CG L EAV+ F                              ++  L SG  L 
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310

Query: 29  PDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   +L  C    N+  G  IH   +KLG   ++ V  +L+ MY + G  + A  L
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAIL 370

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG--VSMDPITVASILPVCARSD 143
           F  +  +   SWN+MI  Y + G   E  D+L +M +E   + ++ +T+ ++LP C    
Sbjct: 371 FRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +LS   +H Y ++H  ++   ++N  I  YAK G +  A  VF  M  + V SWN++I 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + Q+ DPI A  F+  M + GI PD  ++VSL     +L   +  + +HGF++R G  M
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            +  +  +++ +Y            FE +  K+ + WN +++GY+QN L +EA+ +F+ M
Sbjct: 551 -NSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQM 609

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
              + + P++    SIL A S + AL  G ++H   +KN L  D FVA  L+DMY K G 
Sbjct: 610 LS-DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF 668

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +  +  +F ++       WN +I+  G+HGQG+KA+  F  M     +PD  TF+ +L A
Sbjct: 669 LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           C H+GLVSEG  Y   MQ  + ++P L+HY C++D+ GRAG L  A NFI  MP  PDA 
Sbjct: 729 CCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAK 788

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IW +LL +   + ++E+G   +++L  +++     Y+L+SN+YA  GKW+ V  VR   +
Sbjct: 789 IWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMK 848

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           D  L+K  G S IE+  KV  F  G  ++P  ++I      L  ++  +GY PD S VL 
Sbjct: 849 DLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLH 908

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           ++EE EK  IL  HSE++AI FG +++   + ++I KNLR+C DCHN  K+IS+  +REI
Sbjct: 909 ELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREI 968

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           ++RD+ RFHHFK GICSCGDYW
Sbjct: 969 VIRDNKRFHHFKKGICSCGDYW 990



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 277/528 (52%), Gaps = 19/528 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S YVR     EA+  F +    +  +PD +TFP ++KAC    D   GK +H   +K+
Sbjct: 180 LVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+FV  +++ +Y + G  + A +LFD MP ++  SWN++I G+ ++G  +EA    
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             +   G  + P   T+ ++LPVC+   N+  G++IH   VK GL   L V N LI+MY+
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT--MQQAGIQPDLLTL 233
           K G +  A  +F ++  + VVSWNS+I AY +               M++  ++ + +T+
Sbjct: 360 KCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTI 419

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           ++L     + ++  + R++HG+ +R   F    +I NA +  YAK G +  A  VF G+ 
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHS-FQYKELINNAFIAAYAKCGSLVFAEHVFFGMN 478

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K V SWN +I G+AQNG   +A++ +  M     I P+  + VS+L A   +G L+ G 
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG-ILPDDFSIVSLLLACGRLGLLQYGK 537

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  V++N L  + FVA  L+ +Y  C +     + F  +   +SV WNA++S +  + 
Sbjct: 538 EIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNE 597

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH- 472
             ++AL+ FRQML +G+ PD I   S+L ACS    +  G+         F +K  L   
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV-----HCFALKNSLMED 652

Query: 473 --YGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
               C ++D++ ++G LG +      +  +  AS W  ++    +HG 
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS-WNVMITGFGVHGQ 699



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 211/403 (52%), Gaps = 9/403 (2%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DIL 117
           F  D  +   L+ MY   G    +R +FD +  ++   WNA++SGY ++    EA+   L
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + + +     D  T   ++  C    +I  G  +H   VK GL  +LFV N +I +Y K 
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA--GIQPDLLTLVS 235
           G +  A+ +FD+M E++++SWNS+I  + ++   + A+  F ++ ++  G+ PD+ T+V+
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L  + +   +      +HG  ++ G  + ++++ NA++DMY+K G ++ A  +F  +  K
Sbjct: 319 LLPVCSGEGNVDVGMVIHGMAVKLG-LVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMM---EECNEINPNQGTYVSILPAYSHVGALRQG 352
            V+SWN++I  Y++ G   E  ++ + M   EE  E+  N+ T +++LPA      L   
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEV--NEVTILNLLPACLEESELLSL 435

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H   +++   +   +    +  Y KCG +  A  +F+ +   S   WNA+I  H  +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           G   KAL+F+ +M   G+ PD  + VSLL AC   GL+  G+ 
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 209/429 (48%), Gaps = 18/429 (4%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMD----PITVASILPVCARSDNILSGL-LIHLYI 155
           IS  C++G+   ALD L          D       +  +L  C +  N+  G  L  +  
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPI 212
           V      +  ++  LI MY+  G    +  VFD+++ +++  WN++++ Y   E  ++ I
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             H F   +     QPD  T   L        D    +SVHG  ++ G  M D+ +GNA+
Sbjct: 195 --HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIM-DLFVGNAM 251

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP 331
           + +Y K G ++ A  +F+ +P +++ISWN+LI G+++NG   EA   F+ ++E  + + P
Sbjct: 252 IALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T V++LP  S  G +  G+ IH   +K  L  ++ V   L+DMY KCG + +A  LF
Sbjct: 312 DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTAC-SHSG 448
            ++   S V WN++I  +   G   +  +  R+M   +E +  + +T ++LL AC   S 
Sbjct: 372 RKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESE 431

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           L+S    + + ++  F  K  + +    +  + + G L  A +    M  +  +S W A+
Sbjct: 432 LLSLRALHGYSLRHSFQYKELINN--AFIAAYAKCGSLVFAEHVFFGMNTKSVSS-WNAV 488

Query: 509 LGACRIHGN 517
           +G    +G+
Sbjct: 489 IGGHAQNGD 497


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/651 (40%), Positives = 379/651 (58%), Gaps = 35/651 (5%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A  +F  +   +  SWN MI G+  S + + AL++   M   G+S +  T   +   CA+
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---- 197
           S     G  IH  I+K+GL  +L V  +LI+MYA+ G++  A +VFD    RDVVS    
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 198 ---------------------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
                                      WN++I+ Y +      A   F  M +  ++PD 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T+ ++ S      +    R +H +I   G F  ++ + NA++D+Y+K G +  A  +FE
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHG-FGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           GL  KDVISWNTLI GYA      EA+ VFQ M +  E  PN  T +SILPA +H+GA+ 
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE-TPNDVTMLSILPACAHLGAID 328

Query: 351 QGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
            G  IH  + K    +  +  + T L+DMY KCG I+ A  +F  +   S    NA+I  
Sbjct: 329 IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
             +HG+ D A +   +M  +G+ PD ITFV LL+ACSH+GL   G++ F  M  ++ I+P
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            L+HYGCM+DL GR+G    A   I +M + PD  IWG+LL AC+IH N+ELG + + +L
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKL 508

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
            +++ +N G YVL+SNIYA   +W+ V  VR+L  D+GLKK PG SSIE+++ V  F  G
Sbjct: 509 MKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIG 568

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           ++ HP+ ++IY  L  + + +   G+V D S VLQ++EE+ KE  L+ HSE+LAIAFG+I
Sbjct: 569 DKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLI 628

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           S+ P + ++I KNLRVC +CH  TK IS+I +REII RD +RFHHFKDG+C
Sbjct: 629 STKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 216/437 (49%), Gaps = 48/437 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y + ++ GL P+ YTFP + K+C   +   +GK+IH  +LK G   D+ V  SL+ MY 
Sbjct: 65  LYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYA 124

Query: 75  RFGLA-------------------------------NVARKLFDDMPVRDSGSWNAMISG 103
           + G+                                + A+K+FD++P++D  SWNAMISG
Sbjct: 125 QNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISG 184

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y + G   EAL++ +EM    V  D  T+A++L  C  S N+  G  IH +I  HG   N
Sbjct: 185 YAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSN 244

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G M  A  +F+ +  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 245 LKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLK 304

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR-GWFMEDVIIGNAVVDMYAKLGII 282
            G  P+ +T++S+    A L      R +H +I ++    + +  +  +++DMYAK G I
Sbjct: 305 LGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNI 364

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF+ +  K + S N +I G+A +G A  A ++   M++ + I P+  T+V +L A
Sbjct: 365 EAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKK-DGIEPDDITFVGLLSA 423

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP- 395
            SH G    G     R I   +  D  +        C++D+ G+ G   +A  L   +  
Sbjct: 424 CSHAGLSDLG-----RKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTM 478

Query: 396 RSSSVPWNAIISCHGIH 412
               V W +++    IH
Sbjct: 479 EPDGVIWGSLLKACKIH 495



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 184/373 (49%), Gaps = 37/373 (9%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A+ VF  + E + +SWN++I  +  S+DPI+A   +  M   G+ P+  T   L
Sbjct: 25  FHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFL 84

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG----- 291
               A+    +  + +H  I++ G  + D+ +  +++ MYA+ GI+  A  VF+      
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTV-DLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143

Query: 292 --------------------------LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
                                     +P+KDV+SWN +I+GYA+ G   EA+E+F  M +
Sbjct: 144 VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMK 203

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             ++ P++ T  ++L   +H G +  G +IH+ +  +    ++ +   L+D+Y KCG ++
Sbjct: 204 M-DVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEME 262

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A  LF  +     + WN +I  +       +AL  F++ML  G  P+ +T +S+L AC+
Sbjct: 263 RAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACA 322

Query: 446 HSGLVSEGQRYFHMM--QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           H G +  G R+ H+   ++  GI  +      ++D++ + G++  A N + +  +    S
Sbjct: 323 HLGAIDIG-RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA-NQVFDTILNKSLS 380

Query: 504 IWGALLGACRIHG 516
              A++    +HG
Sbjct: 381 SCNAMIFGFAMHG 393



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y   GR  EA++ F +  +   ++PD  T   VL  C    N+  G++IH  +   
Sbjct: 181 MISGYAEIGRYKEALELFNEM-MKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNH 239

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ +Y + G    A  LF+ +  +D  SWN +I GY    +  EAL + 
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVF 299

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
            EM   G + + +T+ SILP CA    I  G  IH+YI K   G+  N  +  +LI+MYA
Sbjct: 300 QEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYA 359

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VFD ++ + + S N++I  +        A    + M++ GI+PD +T V 
Sbjct: 360 KCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVG 419

Query: 236 LTS 238
           L S
Sbjct: 420 LLS 422


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/771 (35%), Positives = 411/771 (53%), Gaps = 79/771 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           ++S Y +  R  + ++ F     +    P+ +TF  V+K+C  L   +++   +L L ++
Sbjct: 108 LMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGAL-GCRELAPQLLGLFWK 166

Query: 61  WDVF----VAASLLHMYCRFGLANVARKLF------------------------------ 86
           +D +    V  +L+ M+ R G  + A +LF                              
Sbjct: 167 FDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEY 226

Query: 87  -DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            +DM  RD  SWN MI+   QSG   EAL ++ EM  +GV +D  T  S L  CAR  ++
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  +++   + + +V++ LI +YAK G  + A RVF+ + +R+ VSW  +I   
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q      +   F  M+   +  D   L +L S      D    R +H   ++ G     
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-HNRA 405

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +++ N+++ +YAK G + +A  VF  +  +D++SW ++IT Y+Q G   +A E F  M  
Sbjct: 406 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT 465

Query: 326 CN-------------------------------EINPNQGTYVSILPAYSHVGALRQGIK 354
            N                               ++ P+  TYV++    + +GA + G +
Sbjct: 466 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 525

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           I    +K  L  +V VA   + MY KCGRI +A  LF  +     V WNA+I+ +  HG 
Sbjct: 526 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGM 585

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A   F  ML +G +PD+I++V++L+ CSHSGLV EG+ YF MM    GI P L+H+ 
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAGHL  A + I  MP++P A +WGALL AC+IHGN EL  +A+  +FE+DS 
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G Y+L++ IY++ GK +   +VR L RD+G+KK PG+S +EV NKV +F   + +HP+
Sbjct: 706 DSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I +++  L  K+  LGYV           E  +  I   HSE+LA+AFGI+S P   
Sbjct: 766 VIAIRNKMDELMEKIAHLGYVR---------TESPRSEI--HHSEKLAVAFGIMSLPAWM 814

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI I KNLR+CGDCH   K IS +T+RE ++RD  RFHHFK G CSCGDYW
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 222/501 (44%), Gaps = 49/501 (9%)

Query: 23  LTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           +T GL    +    +L A   C  L D +++  + +K   E +V     +++ Y + G  
Sbjct: 31  VTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIK---EPNVITHNIMMNGYAKQGSL 87

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPV 138
           + A +LFD MP RD  SWN ++SGY Q+   ++ L+    M   G S+ +  T   ++  
Sbjct: 88  SDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKS 147

Query: 139 CAR--------------------SDNILSGLLIHLYIVKHGLEF-----------NLFVS 167
           C                       D  +   L+ +++    ++F            +F  
Sbjct: 148 CGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 207

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N+++  YAK   + HA+  F+ M ERDVVSWN +IAA  QS     A G    M + G++
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D  T  S  +  A+L      + +H  ++ R     D  + +A++++YAK G    A  
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHV 346
           VF  L  ++ +SW  LI G  Q    S+++E+F QM  E   I  +Q    +++    + 
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI--DQFALATLISGCFNR 384

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             L  G ++H+  +K+     + V+  L+ +Y KCG + +A  +F  +     V W ++I
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           + +   G   KA  FF  M       + IT+ ++L A    G   +G + +  M  +  +
Sbjct: 445 TAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 467 KPHLKHYGCMVDLFGRAGHLG 487
            P    Y   V LF     +G
Sbjct: 501 TPDWVTY---VTLFRGCADIG 518


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/581 (40%), Positives = 357/581 (61%), Gaps = 19/581 (3%)

Query: 139 CARSDNILSGLLI--------------HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           CA  + I+S LLI              H  + K  L  + F+ + L+  Y K G    AL
Sbjct: 35  CATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDAL 94

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           ++FD M  +D+VSWNS+I+ + +    ++   F+T   +  ++P+ +T++S+ S  +   
Sbjct: 95  KLFDDMPHKDLVSWNSLISGFSRCLH-MSLTAFYTMKFEMSVKPNEVTILSMISACSGAL 153

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           D    + +HGF ++ G  +E V + N++++MY K G + SAC +FE +P  + +SWN++I
Sbjct: 154 DA--GKYIHGFGIKVGGTLE-VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSII 210

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
                NG A E I+ F  M     I  ++GT +++L A  H+G  +    IH  +     
Sbjct: 211 AAQVTNGCAREGIDYFNKMRRLG-IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
              + +AT L+D Y K GR+  +  +F +V  +  V W A+++ +  HG G +A+  F  
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M ++G+ PDH+TF  LL+ACSHSGLV+EG+ YF++M E +GI+P + HY CMVDL GR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            L  A+  IQNMP+ P+A +WGALLGACR+HGN+ELG   ++ L  ++  +   Y+++SN
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSN 449

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           +Y+    W+   +VR+L ++RGLK+TPG+SSIE  NK   F+ G+R+HP+ EKIY +L  
Sbjct: 450 MYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEE 509

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
           L  K++  GY     +VLQDVEE+ KE ++  HSE+LAIAFG++ S     + I KNLR+
Sbjct: 510 LLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRI 569

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CGDCH+  K IS I +R II+RD  RFHHF DG CSC DYW
Sbjct: 570 CGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 218/416 (52%), Gaps = 12/416 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
            + +C ++ + ++IH  V K     D F+   L+  Y + G A  A KLFDDMP +D  S
Sbjct: 48  AVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVS 107

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN++ISG+ +  +   +L     M+ E  V  + +T+ S++  C  S  + +G  IH + 
Sbjct: 108 WNSLISGFSRCLHM--SLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDAGKYIHGFG 163

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +K G    + V+N+LINMY K G +  A R+F+ + + + VSWNSIIAA   +       
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
            +F  M++ GI+ D  T+++L      L   + + S+HG +   G F   + I  A++D 
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTG-FGAKITIATALLDT 282

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAKLG ++++  VF  +   D ++W  ++ GYA +GL  EAI++F+ M     + P+  T
Sbjct: 283 YAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMAN-KGLEPDHVT 341

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV--ATCLVDMYGKCGRIDDAMSLFYQ 393
           +  +L A SH G + +G K +  V+      +  V   +C+VD+ G+CG ++DA  +   
Sbjct: 342 FTHLLSACSHSGLVNEG-KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQN 400

Query: 394 VPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHS 447
           +P   +   W A++    +HG  +        +++ E + P +   +S + + S S
Sbjct: 401 MPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRS 456



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 6/359 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLGF 59
           +IS + RC  +S  +  FY       ++P+  T   ++ AC   +D GK IH   +K+G 
Sbjct: 111 LISGFSRCLHMS--LTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGG 168

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
             +V VA SL++MY + G    A +LF+ +P  ++ SWN++I+    +G A E +D  ++
Sbjct: 169 TLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNK 228

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR  G+  D  T+ ++L  C           IH  +   G    + ++  L++ YAK G 
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGR 288

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  +  VF ++   D V+W +++A Y        A   F +M   G++PD +T   L S 
Sbjct: 289 LSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSA 348

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVI 298
            +        +S    +         V   + +VD+  + G++N A  V + +P++ +  
Sbjct: 349 CSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAG 408

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            W  L+     +G      EV + +     ++P    Y+ +   YS   + +   K+ A
Sbjct: 409 VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRN--YIMLSNMYSASRSWKDAAKVRA 465


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/592 (41%), Positives = 356/592 (60%), Gaps = 6/592 (1%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           LD+LD   L   +  P    S +  CA+S N+     IH ++       + F+ N+LI+M
Sbjct: 39  LDLLDAGEL---APTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K   +  A  VFDQM  +D+VSW S+IA Y Q++ P+ A G    M +   +P+  T 
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL        D    R +H   ++ GW  EDV +G+A++DMYA+ G ++ A AVF+ L 
Sbjct: 156 ASLLKAAGAYADSGTGRQIHALAVKCGWH-EDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K+ +SWN LI+G+A+ G    A+  F  M   N       TY S+  + + +GAL QG 
Sbjct: 215 SKNGVSWNALISGFARKGDGESALMTFAEMLR-NGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +HA VIK+      FV   L+DMY K G + DA  +F +V     V WN++++    +G
Sbjct: 274 WVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYG 333

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +A++ F +M   GV  + ITF+ +LTACSH GLV EG+RYF MM+E + ++P + HY
Sbjct: 334 LGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHY 392

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             +V L GRAG L  A  FI  MP+ P A++WGALL ACR+H N ++G  A+D +FE+D 
Sbjct: 393 VTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDP 452

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G  VL+ NIYA+ G+W+    VR + +  G+KK P  S +E+ N V +F   + THP
Sbjct: 453 DDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHP 512

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + E+IY     ++ K++  GYVPD  +VL  V++ EKE  L  HSE+LA+AF +I  P  
Sbjct: 513 QAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAG 572

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + I+I KN+R+CGDCH+  K+IS++  REI+VRD+NRFHHF  G CSCGDYW
Sbjct: 573 ATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 206/390 (52%), Gaps = 6/390 (1%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L P    +   + AC   +NL D +KIH  +    F  D F+  SL+HMYC+      AR
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD M  +D  SW ++I+GY Q+   VEA+ +L  M       +  T AS+L       
Sbjct: 107 NVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +  +G  IH   VK G   +++V + L++MYA+ G M  A  VFD++  ++ VSWN++I+
Sbjct: 167 DSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + +  D  +A   F  M + G +    T  S+ S +A+L      + VH  +++    +
Sbjct: 227 GFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKL 286

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               +GN ++DMYAK G +  A  VF+ +  KD+++WN+++T +AQ GL  EA+  F+ M
Sbjct: 287 T-AFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEM 345

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +   +  NQ T++ IL A SH G +++G +    + +  L  ++     +V + G+ G 
Sbjct: 346 RKSG-VYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGL 404

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           ++ A+   +++P   ++  W A+++   +H
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 7/289 (2%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L    +P+ +TF  +LKA     D   G++IH   +K G+  DV+V ++LL MY R G  
Sbjct: 144 LKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKM 203

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           ++A  +FD +  ++  SWNA+ISG+ + G+   AL    EM   G      T +S+    
Sbjct: 204 DMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSI 263

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           AR   +  G  +H +++K   +   FV N L++MYAK G M  A +VFD++  +D+V+WN
Sbjct: 264 ARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWN 323

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           S++ A+ Q      A   F  M+++G+  + +T + + +  +     +  +    F M +
Sbjct: 324 SMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRY--FEMMK 381

Query: 260 GWFMEDVIIGN-AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG 306
            + +E  I     VV +  + G++N A      +P++   + W  L+  
Sbjct: 382 EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/742 (35%), Positives = 408/742 (54%), Gaps = 39/742 (5%)

Query: 1   MISVYVRCGRLSEAVDCF------------------------------YQFTLTSG--LR 28
           MI++Y +CG L EAV+ F                              ++  L SG  L 
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310

Query: 29  PDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   +L  C    N+  G  IH   +KLG   ++ V  +L+ MY + G  + A  L
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAIL 370

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG--VSMDPITVASILPVCARSD 143
           F  +  +   SWN+MI  Y + G   E  D+L +M +E   + ++ +T+ ++LP C    
Sbjct: 371 FRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +LS   +H Y ++H  ++   ++N  I  YAK G +  A  VF  M  + V SWN++I 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + Q+ DPI A  F+  M + GI PD  ++VSL     +L   +  + +HGF++R G  M
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            +  +  +++ +Y            FE +  K+ + WN +++GY+QN L +EA+ +F+ M
Sbjct: 551 -NSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQM 609

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
              + + P++    SIL A S + AL  G ++H   +KN L  D FVA  L+DMY K G 
Sbjct: 610 LS-DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF 668

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +  +  +F ++       WN +I+  G+HGQG+KA+  F  M     +PD  TF+ +L A
Sbjct: 669 LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           C H+GLVSEG  Y   MQ  + ++P L+HY C++D+ GRAG L  A NFI  MP  PDA 
Sbjct: 729 CCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAK 788

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IW +LL +   + ++E+G   +++L  +++     Y+L+SN+YA  GKW+ V  VR   +
Sbjct: 789 IWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMK 848

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           D  L+K  G S IE+  KV  F  G  ++P  ++I      L  ++  +GY PD S VL 
Sbjct: 849 DLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLH 908

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           ++EE EK  IL  HSE++AI FG +++   + ++I KNLR+C DCHN  K+IS+  +REI
Sbjct: 909 ELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREI 968

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           ++RD+ RFHHFK GICSCGDYW
Sbjct: 969 VIRDNKRFHHFKKGICSCGDYW 990



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 278/528 (52%), Gaps = 19/528 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S YVR     EA+  F +    +  +PD +TFP ++KAC    D   GK +H   +K+
Sbjct: 180 LVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D+FV  +++ +Y + G  + A +LFD MP ++  SWN++I G+ ++G  +EA    
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             +   G  + P   T+ ++LPVC+   N+  G++IH   VK GL   L V N LI+MY+
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT--MQQAGIQPDLLTL 233
           K G +  A  +F ++  + VVSWNS+I AY +               M++  ++ + +T+
Sbjct: 360 KCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTI 419

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           ++L     + ++  + R++HG+ +R   F    +I NA +  YAK G +  A  VF G+ 
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHS-FQYKELINNAFIAAYAKCGSLVFAEHVFFGMN 478

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K V SWN +I G+AQNG   +A++ +  M     I P+  + VS+L A   +G L+ G 
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG-ILPDDFSIVSLLLACGRLGLLQYGK 537

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +IH  V++N L  + FVA  L+ +Y  C +     + F ++   +SV WNA++S +  + 
Sbjct: 538 EIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNE 597

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH- 472
             ++AL+ FRQML +G+ PD I   S+L ACS    +  G+         F +K  L   
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV-----HCFALKNSLMED 652

Query: 473 --YGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
               C ++D++ ++G LG +      +  +  AS W  ++    +HG 
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS-WNVMITGFGVHGQ 699



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 211/403 (52%), Gaps = 9/403 (2%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DIL 117
           F  D  +   L+ MY   G    +R +FD +  ++   WNA++SGY ++    EA+   L
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           + + +     D  T   ++  C    +I  G  +H   VK GL  +LFV N +I +Y K 
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA--GIQPDLLTLVS 235
           G +  A+ +FD+M E++++SWNS+I  + ++   + A+  F ++ ++  G+ PD+ T+V+
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L  + +   +      +HG  ++ G  + ++++ NA++DMY+K G ++ A  +F  +  K
Sbjct: 319 LLPVCSGEGNVDVGMVIHGMAVKLG-LVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMM---EECNEINPNQGTYVSILPAYSHVGALRQG 352
            V+SWN++I  Y++ G   E  ++ + M   EE  E+  N+ T +++LPA      L   
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEV--NEVTILNLLPACLEESELLSL 435

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H   +++   +   +    +  Y KCG +  A  +F+ +   S   WNA+I  H  +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           G   KAL+F+ +M   G+ PD  + VSLL AC   GL+  G+ 
Sbjct: 496 GDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 209/429 (48%), Gaps = 18/429 (4%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMD----PITVASILPVCARSDNILSGL-LIHLYI 155
           IS  C++G+   ALD L          D       +  +L  C +  N+  G  L  +  
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPI 212
           V      +  ++  LI MY+  G    +  VFD+++ +++  WN++++ Y   E  ++ I
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             H F   +     QPD  T   L        D    +SVHG  ++ G  M D+ +GNA+
Sbjct: 195 --HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIM-DLFVGNAM 251

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP 331
           + +Y K G ++ A  +F+ +P +++ISWN+LI G+++NG   EA   F+ ++E  + + P
Sbjct: 252 IALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T V++LP  S  G +  G+ IH   +K  L  ++ V   L+DMY KCG + +A  LF
Sbjct: 312 DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTAC-SHSG 448
            ++   S V WN++I  +   G   +  +  R+M   +E +  + +T ++LL AC   S 
Sbjct: 372 RKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESE 431

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           L+S    + + ++  F  K  + +    +  + + G L  A +    M  +  +S W A+
Sbjct: 432 LLSLRALHGYSLRHSFQYKELINN--AFIAAYAKCGSLVFAEHVFFGMNTKSVSS-WNAV 488

Query: 509 LGACRIHGN 517
           +G    +G+
Sbjct: 489 IGGHAQNGD 497


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 360/578 (62%), Gaps = 3/578 (0%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T    L  CAR  ++  G  +       G + ++FV ++L+++YA++G M  A++VF
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D+M  RD V+W++++A +  +  P+ A   +  M++ G++ D + ++ +        + R
Sbjct: 167 DRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
              SVHG ++R G  M DV+   ++VDMYAK G+++ AC VF  +  ++ +SW+ +I+G+
Sbjct: 227 MGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           AQNG + EA+ +F+ M+  + I P+ G  VS L A S++G L+ G  +H  +++    F+
Sbjct: 286 AQNGQSDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             + T  +DMY KCG +  A  LF  +     + WNA+I+C G HG+G  AL  F++M +
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+RPDH TF SLL+A SHSGLV EG+ +F  M   F I P  KHY C+VDL  R+G + 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A + + +M   P  +IW ALL  C  +  +ELG   +D + E+  ++VG   L+SN+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
              KW+ V +VR L +D G KK PG SSIE+      F   +++HP+ E+I  ++  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDL 583

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           +M+ +GY+P   FV  D+EE+ KE  L+ HSE+LAIAFG++++ P + + I KNLRVCGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K+IS+I +REI+VRD+ RFHHFKDG+CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 224/413 (54%), Gaps = 20/413 (4%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R G  + A+  F    L    RPD  TF   L AC  L D   G+ +       G++ 
Sbjct: 84  HSRRGSPASALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DVFV +SLLH+Y R+G    A K+FD MP RD  +W+ M++G+  +G  ++A+ +   MR
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +GV  D + +  ++  C  + N+  G  +H ++++HG+  ++  + +L++MYAK G++ 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A RVF  M+ R+ VSW+++I+ + Q+     A   F  MQ +GIQPD   LVS     +
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +   +  RSVHGFI+RR  F  + I+G A +DMY+K G + SA  +F  +  +D+I WN
Sbjct: 322 NIGFLKLGRSVHGFIVRR--FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I     +G   +A+ +FQ M E   + P+  T+ S+L A SH G + +G     ++  
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETG-MRPDHATFASLLSALSHSGLVEEG-----KLWF 433

Query: 362 NCLC--FDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS 407
            C+   F +  A     CLVD+  + G +++A  L   +    +V  W A++S
Sbjct: 434 GCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/729 (35%), Positives = 408/729 (55%), Gaps = 33/729 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-----RNLVDGKKIHCSVL 55
           MIS ++R G   EA+  F          P+  TF  VL +C      +L D + IH  ++
Sbjct: 82  MISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIV 141

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLF----DDMPVRDSGSWNAMISGYCQSGNAV 111
             G E + FV  +L+  Y + G  + A ++F    D+ P     + +AMIS   Q+G   
Sbjct: 142 GAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQ 201

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN-- 169
           E+L +   M LEG     +T+ S+L  C    ++L       ++++  +E      +N  
Sbjct: 202 ESLRLFYAMNLEGTKPSGVTLVSVLNAC----SMLPVGSATAFVLEQAMEVVSATRDNVL 257

Query: 170 ---LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
              L+  YA+   +  A   FD +   DVVSWN++ AAY Q + P  A   F  M   G+
Sbjct: 258 GTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGV 317

Query: 227 QPDLLTLVS-LTSIVAQLNDCRNS--RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +P + T ++ LT+  A      ++  + +   +   G    D  + NA ++MYAK G + 
Sbjct: 318 RPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG-LEGDTAVANATLNMYAKCGSLA 376

Query: 284 SACAVFEGL-PVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
            A AVFE + P + D I+WN+++  Y  +GL  EA E+FQ ME    + PN+ T+V++L 
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 436

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-- 399
           A +   ++ QG +IHARV+ N    D  +   L++MY KCG +DDA ++F    +SSS  
Sbjct: 437 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIF---DKSSSNQ 493

Query: 400 ---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              + W ++++ +  +GQ ++AL  F  M  +GVRP+HITF+S LTAC+H G + +G   
Sbjct: 494 EDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCEL 553

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              M  + GI P  KH+ C+VDL GR G L  A   ++    + D   W ALL AC+   
Sbjct: 554 LSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSK 612

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            +E G   ++R+ ++D E    Y++++++YA  G+W     +R    D+G++  PG S++
Sbjct: 613 ELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAV 672

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EVN ++  F  G+++HPK E+IY EL  L   +K+ GYV D   VL DV ++ KE +L  
Sbjct: 673 EVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMR 732

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LAIAFG++S+P  SP+++ KNLRVC DCH  TK IS++T R+I++RDS+R+HHF  
Sbjct: 733 HSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTS 792

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 793 GTCSCGDYW 801



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 251/518 (48%), Gaps = 32/518 (6%)

Query: 27  LRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           +RP+ +    ++ AC    NL  G++IH  +    FE +  +  +L+ MY + G    A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 84  KLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVC 139
           + FD +P    RD  +WNAMIS + ++G+A EAL +  +M  +G    + +T  S+L  C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 140 ARSDNILSGLL-------IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF----D 188
                + +GLL       IH  IV  G+E   FV   L++ Y K G +  A  VF    D
Sbjct: 123 -----VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +     +V+ +++I+A  Q+  P  +   F  M   G +P  +TLVS+ +  + L     
Sbjct: 178 EEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSA 237

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           +  V    M       D ++G  ++  YA+   ++ A A F+ +   DV+SWN +   Y 
Sbjct: 238 TAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYL 297

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSIL---PAYSHVGALRQGIKIHARVIKNCLC 365
           Q+    EA+ +F+ M     + P+  T+++ L    AY    A   G +I + + +  L 
Sbjct: 298 QHHRPREALVLFERM-LLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLE 356

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFR 423
            D  VA   ++MY KCG + DA ++F ++   R   + WN++++ +G HG G +A   F+
Sbjct: 357 GDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQ 416

Query: 424 QMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            M  E  V+P+ +TFV++L A +    +++G R  H      G +        +++++ +
Sbjct: 417 AMEAEKLVKPNKVTFVAVLDASTSRTSIAQG-REIHARVVSNGFESDTVIQNALLNMYAK 475

Query: 483 AGHLGMAHN-FIQNMPVRPDASIWGALLGACRIHGNME 519
            G L  A   F ++   + D   W +L+     +G  E
Sbjct: 476 CGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAE 513



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           E+ PN    ++++ A S +G L  G +IH+++       +  +   L+ MY KCG + DA
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 388 MSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPDHITFVSLLTA 443
              F ++PR+S    V WNA+IS    +G   +AL  FR M  +G   P+ +TFVS+L +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 444 CSHSGLVS-EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN-FIQNMPVRPD 501
           C  +GL+S E  R  H      GI+        +VD +G+ G L  A   F++     P 
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 502 ASI--WGALLGACRIHG 516
            S+    A++ AC  +G
Sbjct: 182 TSLVTCSAMISACWQNG 198


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/628 (38%), Positives = 371/628 (59%), Gaps = 20/628 (3%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS----GLLI 151
           SW   I      G+   A+ +   MR    +    +V + LP   +S   L     G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFG--------------MMRHALRVFDQMMERDVVS 197
           H   ++ G   + F +N L+N+Y K                ++    +VFD+M E+DVVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN+++    +S     A G    M + G +PD  TL S+  I A+  D R    +HGF  
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           R G F +DV +G++++DMYA     + +  VF+ LPV+D I WN+++ G AQNG   EA+
Sbjct: 201 RNG-FHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEAL 259

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
            +F+ M     I P   T+ S++PA  ++ +L  G ++HA VI+     +VF+++ L+DM
Sbjct: 260 GLFRRMLHSG-IKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG +  A  +F ++     V W A+I  H +HG   +AL  F +M    ++P+HITF
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           +++LTACSH+GLV +G +YF+ M + +GI P L+H+  + D  GR G L  A+NFI  M 
Sbjct: 379 LAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMK 438

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           ++P AS+W  LL AC++H N  L    + ++F+++  ++G ++++SN Y++ G+W     
Sbjct: 439 IKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAH 498

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +R   R +G++K P  S IEV NK  +F   +++HP YE+I D L   + +M   GYVP+
Sbjct: 499 LRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPN 558

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
              V QD+EE++K  +L  HSE+LAI FGIIS+PP + I++ KNLRVC DCH  TKFIS+
Sbjct: 559 TDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISK 618

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I  REI++RD+NRFHHFKDGICSCGD+W
Sbjct: 619 IVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 218/415 (52%), Gaps = 23/415 (5%)

Query: 33  TFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF-----------GL 78
           + P  LK+C  L     G  +H   L+ G   D F A +LL++YC+            G 
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 79  ANV---ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           A V    RK+FD+MP +D  SWN ++ G  +SG   EAL ++ EM  +G   D  T++S+
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           LP+ A   ++  G+ +H +  ++G   ++FV ++LI+MYA      ++++VFD +  RD 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           + WNS++A   Q+     A G F  M  +GI+P  +T  SL      L      + +H +
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           ++R G F  +V I ++++DMY K G ++ A  +F+ +   D++SW  +I G+A +G A E
Sbjct: 300 VIRGG-FDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPARE 358

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCL 374
           A+ +F  ME  N + PN  T++++L A SH G + +G K    +  +  +   +     L
Sbjct: 359 ALVLFDRMELGN-LKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAAL 417

Query: 375 VDMYGKCGRIDDAMSLF--YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            D  G+ G++++A +     ++  ++SV W+ ++    +H     A    +++ D
Sbjct: 418 ADTLGRPGKLEEAYNFISGMKIKPTASV-WSTLLRACKVHKNTVLAEEVAKKIFD 471



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 174/358 (48%), Gaps = 37/358 (10%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFP---PVLKACRNLVDGKKIHCSVLKLGFEWDVFV 65
           GR  EA+    +     G +PD +T     P+     ++  G ++H    + GF  DVFV
Sbjct: 152 GRHGEALGLVREM-WRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFV 210

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
            +SL+ MY      + + K+FD++PVRD+  WN+M++G  Q+G+  EAL +   M   G+
Sbjct: 211 GSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGI 270

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
              P+T +S++P C    ++L G  +H Y+++ G + N+F+S++LI+MY K G +  A R
Sbjct: 271 KPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARR 330

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD++   D+VSW ++I  +        A   F  M+   ++P+ +T +++      L  
Sbjct: 331 IFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAV------LTA 384

Query: 246 CRNSRSVHGFIMRRGW-----------FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           C      H  ++ +GW            +  +    A+ D   + G +  A     G+ +
Sbjct: 385 CS-----HAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKI 439

Query: 295 KDVIS-WNTLITG---YAQNGLASE-AIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           K   S W+TL+     +    LA E A ++F +         + G+++ +   YS  G
Sbjct: 440 KPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPR------SMGSHIILSNTYSSSG 491



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++   + G + EA+  F +  L SG++P   TF  ++ AC NL     GK++H  V++ 
Sbjct: 245 MLAGCAQNGSVDEALGLFRRM-LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG 303

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +VF+++SL+ MYC+ G  ++AR++FD +   D  SW AMI G+   G A EAL + 
Sbjct: 304 GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLF 363

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYAK 176
           D M L  +  + IT  ++L  C+ +  +  G      +  H G+  +L     L +   +
Sbjct: 364 DRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGR 423

Query: 177 FGMMRHALRVFDQMMERDVVS-WNSIIAAYEQSNDPITA 214
            G +  A      M  +   S W++++ A +   + + A
Sbjct: 424 PGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLA 462


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/627 (41%), Positives = 371/627 (59%), Gaps = 19/627 (3%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           +W+++I  Y        +    + MR   V  +     S+L       +      +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHAL---------------RVFDQMMERDVVSWNS 200
           V+ GL+ +L+++N LIN YAKF                      +VFD M  RDVVSWN+
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +IA + Q+   + A      M + G ++PD  TL S+  I A+  D    + +HG+ +R 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  DV IG++++DMYAK   +  +   F  LP KD ISWN++I G  QNG     +  
Sbjct: 257 G-FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M + N + P   ++ S++PA +H+ AL  G ++H  +++     + F+A+ LVDMY 
Sbjct: 316 FRRMLKEN-VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYA 374

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCG I  A  +F ++ +   V W AII    +HG    A++ F  ML++GVRP ++ F++
Sbjct: 375 KCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMA 434

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-V 498
           +LTACSH+GLV EG RYF+ M+ +FGI P L+HY  + DL GRAG L  A++FI NM  V
Sbjct: 435 VLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGV 494

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +P  S+W  LL ACR H ++EL     D+L  VDSEN+G YVLMSNIY+   +W+    +
Sbjct: 495 QPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARL 554

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R   R +GLKKTP  S IEV N+V  F  G+++HP Y+KI   L  L  +M+  GYV D 
Sbjct: 555 RIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDT 614

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
           + VL DV+E+ K  +L +HSERLAIA+GIIS+   + I++ KN+RVC DCH   KFI++I
Sbjct: 615 NQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKI 674

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
             REI VRD++RFHHFK+G CSCGDYW
Sbjct: 675 VGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 171/378 (45%), Gaps = 35/378 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ + + G   EA+D   +      L+PD +T   +L      VD   GK+IH   ++ 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DVF+ +SL+ MY +      + + F  +P +D+ SWN++I+G  Q+G     L   
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  E V    ++ +S++P CA    +  G  +H  IV+ G + N F++++L++MYAK 
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  VFD++ +RD+V+W +II         + A   F  M + G++P         
Sbjct: 377 GNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRP------CYV 430

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW-----FMEDVIIG------NAVVDMYAKLGIINSAC 286
           + +A L  C      H  ++  GW        D  I        AV D+  + G +  A 
Sbjct: 431 AFMAVLTACS-----HAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAY 485

Query: 287 AVFEGL----PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                +    P   V  W+ L+     +     A +V   +   +  + N G YV +   
Sbjct: 486 DFISNMRGVQPTGSV--WSILLAACRAHKSVELAEKVLDKLLSVD--SENMGAYVLMSNI 541

Query: 343 YSHVGALRQG--IKIHAR 358
           YS     +    ++IH R
Sbjct: 542 YSAAQRWKDAARLRIHMR 559


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/642 (40%), Positives = 369/642 (57%), Gaps = 35/642 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN M  G+  S + V AL +   M   G+  +  T   +L  CA+      GL IH +++
Sbjct: 31  WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL 90

Query: 157 KHGLEFNLFVSNNLINMY-------------------------------AKFGMMRHALR 185
           K G E +L+V  +LI+MY                               A  G +  A  
Sbjct: 91  KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARN 150

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD++  +DVVSWN++I+ Y ++ +   A   F  M +  ++PD  T+V++ S  A+   
Sbjct: 151 MFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGS 210

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R VH +I   G F  ++ I NA++D Y+K G + +AC +F GL  KDVISWN LI 
Sbjct: 211 IELGRQVHSWIADHG-FGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIG 269

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-- 363
           GY    L  EA+ +FQ M    E +PN  T +SIL A +H+GA+  G  IH  + K    
Sbjct: 270 GYTHLNLYKEALLLFQEMLRSGE-SPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKG 328

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A + F 
Sbjct: 329 VTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFS 388

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M    ++PD ITFV LL+ACSH+G++  G+  F  M   + I P L+HYGCM+DL G +
Sbjct: 389 RMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHS 448

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G    A   I  M + PD  IW +LL AC++HGN+ELG   +  LF+++  N G YVL+S
Sbjct: 449 GLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLS 508

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA  G+W  V  +R L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY  L 
Sbjct: 509 NIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 568

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P++ + I KNLR
Sbjct: 569 EMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLR 628

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           VC +CH  TK IS+I +REII RD  RFHHF+DG+CSC DYW
Sbjct: 629 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/504 (30%), Positives = 239/504 (47%), Gaps = 75/504 (14%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP +LK+C  L    +G +IH  VLKLG+E D++V  SL+ MY 
Sbjct: 50  LYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYV 109

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G    AR +FD++PV+D  SWNAMISG
Sbjct: 110 QNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISG 169

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++GN  EAL++  EM    V  D  T+ +++   ARS +I  G  +H +I  HG   N
Sbjct: 170 YVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSN 229

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI+ Y+K G M  A  +F  +  +DV+SWN +I  Y   N    A   F  M +
Sbjct: 230 LKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLR 289

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    A L      R +H +I +R   + +   +  +++DMY+K G I
Sbjct: 290 SGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDI 349

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF  +  K + +WN +I G+A +G A+ A ++F  M + NEI P+  T+V +L A
Sbjct: 350 EAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRK-NEIKPDDITFVGLLSA 408

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
            SH G L  G  I   +  N  +   +    C++D+ G  G   +A  +   +       
Sbjct: 409 CSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMT------ 462

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
                                       + PD + + SLL AC   G V  G+++    Q
Sbjct: 463 ----------------------------MEPDGVIWCSLLKACKMHGNVELGEKF---AQ 491

Query: 462 EEFGIKP-HLKHYGCMVDLFGRAG 484
             F I+P +   Y  + +++  AG
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAG 515



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 195/401 (48%), Gaps = 37/401 (9%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A+ VF+ + E +++ WN++   +  S DP++A   +  M   G+ P+  T   L
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFL 69

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFME------------------------------DV 266
               A+L   +    +HG +++ G+ ++                              DV
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A+V  YA  G I SA  +F+ +PVKDV+SWN +I+GY + G   EA+E+F+ M + 
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N + P++ T V+++ A +  G++  G ++H+ +  +    ++ +   L+D Y KCG ++ 
Sbjct: 190 N-VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  +     + WN +I  +       +AL  F++ML  G  P+ +T +S+L AC+H
Sbjct: 249 ACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAH 308

Query: 447 SGLVSEGQRYFHMMQEEF--GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
            G +  G R+ H+  ++   G+         ++D++ + G +  AH    +M +      
Sbjct: 309 LGAIDIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPA 366

Query: 505 WGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMS 543
           W A++    +HG  N      +  R  E+  +++ +  L+S
Sbjct: 367 WNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 164/361 (45%), Gaps = 9/361 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS YV  G   EA++ F +  + + +RPD  T   V+ A     ++  G+++H  +   
Sbjct: 166 MISGYVETGNYKEALELFKEM-MKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADH 224

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+  Y + G    A  LF  +  +D  SWN +I GY       EAL + 
Sbjct: 225 GFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLF 284

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
            EM   G S + +T+ SIL  CA    I  G  IH+YI K   G+     +  +LI+MY+
Sbjct: 285 QEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYS 344

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VF+ M+ + + +WN++I  +        A   F+ M++  I+PD +T V 
Sbjct: 345 KCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVG 404

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S  +        R +   +         +     ++D+    G+   A  +   + ++
Sbjct: 405 LLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTME 464

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            D + W +L+     +G      +  Q + +    NP  G+YV +   Y+  G   +  +
Sbjct: 465 PDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNP--GSYVLLSNIYATAGRWNEVAR 522

Query: 355 I 355
           I
Sbjct: 523 I 523


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/630 (38%), Positives = 365/630 (57%), Gaps = 23/630 (3%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGV--SMDPITVASILPVCARSDNILSGLLIHLY 154
           W   I      G+  +A+ +   MR      S  P ++ + L  CA       G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 155 IVKHGLEFNLFVSNNLINMYAKF-------------------GMMRHALRVFDQMMERDV 195
            ++ G   + F +N L+N+Y K                           +VFD+M+ERDV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSWN+++    +      A GF   M + G +PD  TL ++  I A+  D +    VHGF
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
             R G F  DV +G++++DMYA     + +  VF+ LPV+D I WN+L+ G AQNG   E
Sbjct: 196 AFRNG-FDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEE 254

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+ +F+ M +   + P   T+ S++P   ++ +LR G ++HA VI      +VF+++ L+
Sbjct: 255 ALGIFRRMLQAG-VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLI 313

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           DMY KCG I  A  +F ++     V W A+I  + +HG   +AL  F +M     +P+HI
Sbjct: 314 DMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHI 373

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           TF+++LTACSH+GLV +G +YF  M   +GI P L+H+  + D  GRAG L  A+NFI  
Sbjct: 374 TFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISK 433

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           M ++P AS+W  LL ACR+H N  L    + ++ E++  ++G +V++SN+Y+  G+W   
Sbjct: 434 MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEA 493

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
             +R   R +G+KK P  S IEV +K+ +F   +R+HP Y++I D L   + +M   G+V
Sbjct: 494 AHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHV 553

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           P+   V QD+EE+ K ++L  HSE+LAI FGIIS+P  + I++ KNLRVC DCH  TKFI
Sbjct: 554 PNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFI 613

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S++ +REI+VRD+NRFHHFKDG CSCGD+W
Sbjct: 614 SKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 238/468 (50%), Gaps = 41/468 (8%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDF-YTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVF 64
           G   +AV  F +   ++  R     + P  LK+C  L     G  +H   ++ G   D F
Sbjct: 27  GHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRF 86

Query: 65  VAASLLHMYCRF--------GLANV-----------ARKLFDDMPVRDSGSWNAMISGYC 105
            A +LL++YC+         G+A V            RK+FD+M  RD  SWN ++ G  
Sbjct: 87  TANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCA 146

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           + G   EAL  + +M  EG   D  T++++LP+ A   ++  GL +H +  ++G + ++F
Sbjct: 147 EEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVF 206

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V ++LI+MYA      ++++VFD +  RD + WNS++A   Q+     A G F  M QAG
Sbjct: 207 VGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG 266

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P  +T  SL  +   L   R  + +H +++  G F ++V I ++++DMY K G I+ A
Sbjct: 267 VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGG-FEDNVFISSSLIDMYCKCGEISIA 325

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F+ +   DV+SW  +I GYA +G A EA+ +F+ ME  N   PN  T++++L A SH
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNA-KPNHITFLAVLTACSH 384

Query: 346 VGALRQGIKI------HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF--YQVPRS 397
            G + +G K       H  ++      + F A  L D  G+ G +D+A +     Q+  +
Sbjct: 385 AGLVDKGWKYFKSMSNHYGIVPT---LEHFAA--LADTLGRAGELDEAYNFISKMQIKPT 439

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP--DHITFVSLLTA 443
           +SV W+ ++    +H     A    +++++   R    H+   ++ +A
Sbjct: 440 ASV-WSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSA 486



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 202/445 (45%), Gaps = 58/445 (13%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFP---PVLKACRNLVDGKKIHCSVLKLGFEWDVFV 65
           GR  EA+  F +     G RPD +T     P+   C ++  G ++H    + GF+ DVFV
Sbjct: 149 GRHHEALG-FVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFV 207

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
            +SL+ MY      + + K+FD++PVRD   WN++++G  Q+G+  EAL I   M   GV
Sbjct: 208 GSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGV 267

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
              P+T +S++PVC    ++  G  +H Y++  G E N+F+S++LI+MY K G +  A  
Sbjct: 268 RPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHC 327

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD+M   DVVSW ++I  Y        A   F  M+    +P+ +T +++      L  
Sbjct: 328 IFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAV------LTA 381

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIINSACAVFEGLPV 294
           C      H  ++ +GW     +  +           A+ D   + G ++ A      + +
Sbjct: 382 CS-----HAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQI 436

Query: 295 KDVIS-WNTLITG--YAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALR 350
           K   S W+TL+      +N + +E     ++ ++  E+ P   G++V +   YS  G   
Sbjct: 437 KPTASVWSTLLRACRVHKNTMLAE-----EVAKKIMELEPRSIGSHVVLSNMYSASGRWN 491

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW-NAIISCH 409
           +   +   + K  +  D             C  I+    L   V    S PW + II   
Sbjct: 492 EAAHLRESMRKKGMKKD-----------PACSWIEVKSKLHVFVAHDRSHPWYDRIID-- 538

Query: 410 GIHGQGDKALNFF-RQMLDEGVRPD 433
                   ALN F  QM  EG  P+
Sbjct: 539 --------ALNAFSEQMAREGHVPN 555


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/678 (37%), Positives = 394/678 (58%), Gaps = 37/678 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F   +LL       L +    LF  M  RD  S+NA+I+G+   G+  +A+ +   + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 122 LEGVSMDP--ITVAS-ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
               S+ P  IT+++ ++   A  D  L G   H  I++ G   N FV + L++MYAK  
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRAL-GKQFHCQILRLGFGANAFVGSPLVDMYAKMS 189

Query: 179 MMRHALRVFDQ-------------------------------MMERDVVSWNSIIAAYEQ 207
           ++  A R FD+                               M +RD ++W +++  + Q
Sbjct: 190 LVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQ 249

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A   F  M+  GI  D  T  S+ +    L+     + +H +I+R   + ++V 
Sbjct: 250 NGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTR-YDDNVF 308

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G+A+VDMY+K   I  A  VF  +  K++ISW  LI GY QNG + EA+ VF  M+  +
Sbjct: 309 VGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQR-D 367

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I+P+  T  S++ + +++ +L +G + H   + + L   + V+  LV +YGKCG I+DA
Sbjct: 368 GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             LF ++     V W A++S +   G+  + ++ F +ML +GV+PD +TF+ +L+ACS +
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           G V +G+ YFH MQ++ GI P   HY CM+DL+ R+G L  A  FI+ MP+ PDA  WG 
Sbjct: 488 GFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGT 547

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL ACR+ G+ME+G  A++ L E+D +N   YVL+ +++A  G+W  V ++R   RDR +
Sbjct: 548 LLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQV 607

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           KK PG S I+  NKV IF   +++HP  + IY++L  L +KM   GY PD S VL DV +
Sbjct: 608 KKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD 667

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            +K H+++ HSE+LAIAFG+I  P + PI+I KNLRVC DCHN TKFIS+IT R+I+VRD
Sbjct: 668 TDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 727

Query: 688 SNRFHHFKDGICSCGDYW 705
           + RFH F DG+CSCGD+W
Sbjct: 728 AVRFHKFSDGVCSCGDFW 745



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 211/426 (49%), Gaps = 40/426 (9%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA-- 79
           S +RP   T   ++ A   L D   GK+ HC +L+LGF  + FV + L+ MY +  L   
Sbjct: 134 SSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGD 193

Query: 80  -----------NV------------------ARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
                      NV                  AR+LF+ M  RDS +W  M++G+ Q+G  
Sbjct: 194 AKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLE 253

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EAL+I   MR +G+++D  T  SIL  C     +  G  IH YI++   + N+FV + L
Sbjct: 254 SEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSAL 313

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY+K   ++ A  VF +M  ++++SW ++I  Y Q+     A   F+ MQ+ GI PD 
Sbjct: 314 VDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL S+ S  A L         H   +  G  M  + + NA+V +Y K G I  A  +F+
Sbjct: 374 YTLGSVISSCANLASLEEGAQFHCLALVSG-LMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +   D +SW  L++GYAQ G A E I++F+ M     + P+  T++ +L A S  G + 
Sbjct: 433 EMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM-LAKGVKPDGVTFIGVLSACSRAGFVE 491

Query: 351 QGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           +G      + K+   +  D    TC++D+Y + G++ +A     Q+P    ++ W  ++S
Sbjct: 492 KGRSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 408 CHGIHG 413
              + G
Sbjct: 551 ACRLRG 556



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 180/366 (49%), Gaps = 17/366 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M++ + + G  SEA++ F +     G+  D YTF  +L AC     L  GK+IH  +++ 
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRF-QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ +VFV ++L+ MY +     +A  +F  M  ++  SW A+I GY Q+G + EA+ + 
Sbjct: 302 RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+ +G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 362 SEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKC 421

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M   D VSW ++++ Y Q          F  M   G++PD +T + + 
Sbjct: 422 GSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVL 481

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
           S  ++       RS    + +    +        ++D+Y++ G +  A    + +P+  D
Sbjct: 482 SACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPD 541

Query: 297 VISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYS------HVGA 348
            I W TL++     G     +E+ +   E   EI+P N  +YV +   ++       V  
Sbjct: 542 AIGWGTLLSACRLRG----DMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQ 597

Query: 349 LRQGIK 354
           LR+G++
Sbjct: 598 LRRGMR 603


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 360/578 (62%), Gaps = 3/578 (0%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T    L  CAR  ++  G  +       G + ++FV ++L+++YA++G M  A++VF
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
            +M  RD V+W++++A +  +  P+ A   +  M++ G++ D + ++ +        + R
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
              SVHG ++R G  M DV+   ++VDMYAK G+++ AC VF  +  ++ +SW+ +I+G+
Sbjct: 227 MGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           AQNG + EA+ +F+ M+  + I P+ G  VS L A S++G L+ G  +H  +++    F+
Sbjct: 286 AQNGQSDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             + T  +DMY KCG +  A  LF  +     + WNA+I+C G HG+G  AL  F++M +
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+RPDH TF SLL+A SHSGLV EG+ +F  M   F I P  KHY C+VDL  R+G + 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A + + +M   P  +IW ALL  C  +  +ELG   +D + E+  ++VG   L+SN+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
              KW+ V +VR L +D G KK PG SSIE+     +F   +++HP+ E+I  ++  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           +M+ +GY+P   FV  D+EE+ KE  L+ HSERLAIAFG++++ P + + I KNLRVCGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K+IS+I +REI+VRD+ RFHHFKDG+CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 223/411 (54%), Gaps = 16/411 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R G  + A+  F    L    RPD  TF   L AC  L D   G+ +       G++ 
Sbjct: 84  HSRRGSPASALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DVFV +SLLH+Y R+G    A K+F  MP RD  +W+ M++G+  +G  ++A+ +   MR
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +GV  D + +  ++  C  + N+  G  +H ++++HG+  ++  + +L++MYAK G++ 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A RVF  M+ R+ VSW+++I+ + Q+     A   F  MQ +GIQPD   LVS     +
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +   +  RSVHGFI+RR  F  + I+G A +DMY+K G + SA  +F  +  +D+I WN
Sbjct: 322 NIGFLKLGRSVHGFIVRR--FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I     +G   +A+ +FQ M E   + P+  T+ S+L A SH G + +G     R++ 
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETG-MRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 362 NCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS 407
           +   F +  A     CLVD+  + G +++A  L   +    +V  W A++S
Sbjct: 439 H---FKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/581 (40%), Positives = 356/581 (61%), Gaps = 19/581 (3%)

Query: 139 CARSDNILSGLLI--------------HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           CA  + I+S LLI              H  + K  L  + F+ + L+  Y K G    AL
Sbjct: 35  CATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDAL 94

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           ++FD M  +D+VSWNS+I+ + +    ++   F+T   +  ++P+ +T++S+ S      
Sbjct: 95  KLFDDMPHKDLVSWNSLISGFSRCLH-MSLTAFYTMKFEMSVKPNEVTILSMISACNGAL 153

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           D    + +HGF ++ G  +E V + N++++MY K G + SAC +FE +P  + +SWN++I
Sbjct: 154 DA--GKYIHGFGIKVGGTLE-VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSII 210

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
                NG A E I+ F  M     I  ++GT +++L A  H+G  +    IH  +     
Sbjct: 211 AAQVTNGCAREGIDYFNKMRRLG-IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
              + +AT L+D Y K GR+  +  +F +V  +  V W A+++ +  HG G +A+  F  
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M ++G+ PDH+TF  LL+ACSHSGLV+EG+ YF++M E +GI+P + HY CMVDL GR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            L  A+  IQNMP+ P+A +WGALLGACR+HGN+ELG   ++ L  ++  +   Y+++SN
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSN 449

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           +Y+    W+   +VR+L ++RGLK+TPG+SSIE  NK   F+ G+R+HP+ EKIY +L  
Sbjct: 450 MYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEE 509

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
           L  K++  GY     +VLQDVEE+ KE ++  HSE+LAIAFG++ S     + I KNLR+
Sbjct: 510 LLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRI 569

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CGDCH+  K IS I +R II+RD  RFHHF DG CSC DYW
Sbjct: 570 CGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 218/416 (52%), Gaps = 12/416 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
            + +C ++ + ++IH  V K     D F+   L+  Y + G A  A KLFDDMP +D  S
Sbjct: 48  AVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVS 107

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN++ISG+ +  +   +L     M+ E  V  + +T+ S++  C  +  + +G  IH + 
Sbjct: 108 WNSLISGFSRCLHM--SLTAFYTMKFEMSVKPNEVTILSMISAC--NGALDAGKYIHGFG 163

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +K G    + V+N+LINMY K G +  A R+F+ + + + VSWNSIIAA   +       
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
            +F  M++ GI+ D  T+++L      L   + + S+HG +   G F   + I  A++D 
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTG-FGAKITIATALLDT 282

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAKLG ++++  VF  +   D ++W  ++ GYA +GL  EAI++F+ M     + P+  T
Sbjct: 283 YAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMAN-KGLEPDHVT 341

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV--ATCLVDMYGKCGRIDDAMSLFYQ 393
           +  +L A SH G + +G K +  V+      +  V   +C+VD+ G+CG ++DA  +   
Sbjct: 342 FTHLLSACSHSGLVNEG-KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQN 400

Query: 394 VPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHS 447
           +P   +   W A++    +HG  +        +++ E + P +   +S + + S S
Sbjct: 401 MPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRS 456



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 6/359 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLGF 59
           +IS + RC  +S  +  FY       ++P+  T   ++ AC   +D GK IH   +K+G 
Sbjct: 111 LISGFSRCLHMS--LTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGG 168

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
             +V VA SL++MY + G    A +LF+ +P  ++ SWN++I+    +G A E +D  ++
Sbjct: 169 TLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNK 228

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR  G+  D  T+ ++L  C           IH  +   G    + ++  L++ YAK G 
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGR 288

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  +  VF ++   D V+W +++A Y        A   F +M   G++PD +T   L S 
Sbjct: 289 LSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSA 348

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVI 298
            +        +S    +         V   + +VD+  + G++N A  V + +P++ +  
Sbjct: 349 CSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAG 408

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            W  L+     +G      EV + +     ++P    Y+ +   YS   + +   K+ A
Sbjct: 409 VWGALLGACRVHGNIELGKEVAEHLINMEPLDPRN--YIMLSNMYSASRSWKDAAKVRA 465


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/702 (35%), Positives = 407/702 (57%), Gaps = 14/702 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPP-----VLKACRNLVDGKKIHCSVLKLGFEWDVFV 65
           ++  V C    +LTS        FP      +L+ C+   D +++H  +LK     D  +
Sbjct: 1   MASIVGCLPNISLTS-----ITQFPENPKSLILQQCKTPKDLQQVHAHLLKTRRLLDPII 55

Query: 66  AASLLHMYCRF--GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
             ++L           + A  +F+ +   +S ++N MI G     +   AL +  +M  +
Sbjct: 56  TEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEK 115

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            V  D  T +S+L  C+R   +  G  +H  I+K G + N FV N LI MYA  G +  A
Sbjct: 116 SVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVA 175

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             VFD M ER +V+WNS+++ Y ++         F  + +  I+ D +T++S+     +L
Sbjct: 176 RHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRL 235

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            +      +  +I+ +G    +  +  +++DMYAK G +++A  +F+ +  +DV++W+ +
Sbjct: 236 ANLEIGELIGEYIVSKG-LRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAM 294

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+GYAQ     EA+ +F  M++ N + PN+ T VS+L + + +GA   G  +H  + K  
Sbjct: 295 ISGYAQADRCKEALNLFHEMQKGN-VYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKK 353

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +   V + T L+D Y KCG ID ++ +F ++   +   W A+I     +G+G  AL FF 
Sbjct: 354 MKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFS 413

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            ML+  V+P+ +TF+ +L+ACSH+ LV +G+  F+ M+ +F I+P ++HYGCMVD+ GRA
Sbjct: 414 SMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRA 473

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A+ FI NMP  P+A +W  LL +CR H N+E+   + + +  ++  + G Y+L+S
Sbjct: 474 GFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLS 533

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           N YA VG+ E    VRSL +++ +KK PG S IE++  V  F++ +  H   ++I+D L 
Sbjct: 534 NTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALD 593

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +  ++K LGYVP+      + EE+ KE  ++ HSE+LAIA+G+I + P++ I+I KNLR
Sbjct: 594 KMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLR 653

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +C DCHN TKFISQ+ ER IIVRD NRFHHFKDG+CSC DYW
Sbjct: 654 MCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/657 (36%), Positives = 389/657 (59%), Gaps = 3/657 (0%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G+ IH  V+K+GF+  V V  +LL MY   G +  A  +F  MP +D  SWN++++ +  
Sbjct: 263 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 322

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            G +++AL +L  M   G S++ +T  S L  C   D    G ++H  +V  GL +N  +
Sbjct: 323 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 382

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N L++MY K G M  + RV  QM  RDVV+WN++I  Y +  DP  A   F TM+  G+
Sbjct: 383 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 442

Query: 227 QPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
             + +T+VS+ S      D     + +H +I+  G F  D  + N+++ MYAK G ++S+
Sbjct: 443 SSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG-FESDEHVKNSLITMYAKCGDLSSS 501

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F GL  +++I+WN ++   A +G   E +++   M     ++ +Q ++   L A + 
Sbjct: 502 QDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG-VSLDQFSFSEGLSAAAK 560

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +  L +G ++H   +K     D F+     DMY KCG I + + +       S   WN +
Sbjct: 561 LAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNIL 620

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           IS  G HG  ++    F +ML+ G++P H+TFVSLLTACSH GLV +G  Y+ M+  +FG
Sbjct: 621 ISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFG 680

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           ++P ++H  C++DL GR+G L  A  FI  MP++P+  +W +LL +C+IHGN++ G  A+
Sbjct: 681 LEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAA 740

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           + L +++ E+   YVL SN++A  G+WE V+ VR     + +KK    S +++ +KV  F
Sbjct: 741 ENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSF 800

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAF 645
             G+RTHP+  +IY +L ++   +K  GYV D S  LQD +E++KEH L +HSERLA+A+
Sbjct: 801 GIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAY 860

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
            ++S+P  S ++IFKNLR+C DCH+  KF+S++  R I++RD  RFHHF+ G+   G
Sbjct: 861 ALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLFGKG 917



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 283/546 (51%), Gaps = 14/546 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S  VR G   E ++ F++     G++P  +    ++ AC        +G ++H  V K
Sbjct: 12  MMSGIVRVGLYLEGME-FFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 70

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV+V+ ++LH+Y  +GL + +RK+F++MP R+  SW +++ GY   G   E +DI
Sbjct: 71  SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 130

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR EGV  +  +++ ++  C    +   G  I   +VK GLE  L V N+LI+M   
Sbjct: 131 YKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGS 190

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G + +A  +FDQM ERD +SWNSI AAY Q+     +   F+ M++   + +  T+ +L
Sbjct: 191 MGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTL 250

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S++  ++  +  R +HG +++ G F   V + N ++ MYA  G    A  VF+ +P KD
Sbjct: 251 LSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKD 309

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN+L+  +  +G + +A+ +   M    + + N  T+ S L A        +G  +H
Sbjct: 310 LISWNSLMASFVNDGRSLDALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILH 368

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             V+ + L ++  +   LV MYGK G + ++  +  Q+PR   V WNA+I  +      D
Sbjct: 369 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 428

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYG 474
           KAL  F+ M  EGV  ++IT VS+L+AC   G + E  +  H  ++   F    H+K+  
Sbjct: 429 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN-- 486

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEVD 532
            ++ ++ + G L  + +    +  R +   W A+L A   HG+ E  L  V+  R F V 
Sbjct: 487 SLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVS 545

Query: 533 SENVGY 538
            +   +
Sbjct: 546 LDQFSF 551



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 213/426 (50%), Gaps = 9/426 (2%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-S 147
           MPVR+  SWN M+SG  + G  +E ++   +M   G+      +AS++  C RS ++   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G+ +H ++ K GL  +++VS  ++++Y  +G++  + +VF++M +R+VVSW S++  Y  
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
             +P      +  M+  G+  +  ++  + S    L D    R + G +++ G     + 
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSG-LESKLA 179

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + N+++ M   +G ++ A  +F+ +  +D ISWN++   YAQNG   E+  +F +M   +
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 239

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC--LVDMYGKCGRID 385
           +   N  T  ++L    HV   + G  IH  V+K  + FD  V  C  L+ MY   GR  
Sbjct: 240 D-EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK--MGFDSVVCVCNTLLRMYAGAGRSV 296

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A  +F Q+P    + WN++++     G+   AL     M+  G   +++TF S L AC 
Sbjct: 297 EANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACF 356

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
                 +G R  H +    G+  +      +V ++G+ G +  +   +  MP R D   W
Sbjct: 357 TPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAW 414

Query: 506 GALLGA 511
            AL+G 
Sbjct: 415 NALIGG 420



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 35/239 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-------------------------TLTSGLRP-----D 30
           +I++Y +CG LS + D F                             L S +R      D
Sbjct: 488 LITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLD 547

Query: 31  FYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            ++F   L A   L    +G+++H   +KLGFE D F+  +   MY + G      K+  
Sbjct: 548 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 607

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
               R   SWN +IS   + G   E      EM   G+    +T  S+L  C+    +  
Sbjct: 608 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 667

Query: 148 GLLIHLYIVKH-GLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           GL  +  I +  GLE  +     +I++  + G +  A     +M M+ + + W S++A+
Sbjct: 668 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLAS 726


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 404/723 (55%), Gaps = 76/723 (10%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+  L S  +PD YT+P +L+ C   V   +G+++H   +  GF+ DV+V  +L+++Y  
Sbjct: 93  YKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAV 152

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G    AR++F++ PV D  SWN +++GY Q+G   EA  + + M               
Sbjct: 153 CGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP-------------- 198

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ER 193
                                    E N   SN++I ++ + G +  A R+F+ +   ER
Sbjct: 199 -------------------------ERNTIASNSMIALFGRKGCVEKARRIFNGVRGRER 233

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D+VSW+++++ YEQ+     A   F  M+ +G+  D + +VS  S  +++ +    R VH
Sbjct: 234 DMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVH 293

Query: 254 GF-------------------------------IMRRGWFMEDVIIGNAVVDMYAKLGII 282
           G                                I   G  + D+I  N+++  Y + G I
Sbjct: 294 GLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSI 353

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             A  +F  +P KDV+SW+ +I+GYAQ+   SEA+ +FQ M+  + + P++   VS + A
Sbjct: 354 QDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ-LHGVRPDETALVSAISA 412

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            +H+  L  G  IHA + +N L  +V ++T L+DMY KCG +++A+ +FY +       W
Sbjct: 413 CTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTW 472

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           NA+I    ++G  +++LN F  M   G  P+ ITF+ +L AC H GLV++G+ YF+ M  
Sbjct: 473 NAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIH 532

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           E  I+ ++KHYGCMVDL GRAG L  A   I +MP+ PD + WGALLGACR H + E+G 
Sbjct: 533 EHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGE 592

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
               +L ++  ++ G++VL+SNIYA+ G W  V E+R +    G+ KTPG S IE N  V
Sbjct: 593 RLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTV 652

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F  G++THP+   I   L  + AK+K  GYVP  S V  D++E+EKE  L  HSE+LA
Sbjct: 653 HEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLA 712

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +AFG+I+  P +PI++ KNLR+C DCH   K IS+  +R+I+VRD +RFHHFK G CSC 
Sbjct: 713 VAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCM 772

Query: 703 DYW 705
           D+W
Sbjct: 773 DFW 775



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 53/371 (14%)

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S  IL+GL+   Y     + F+   S  L+  +       ++LR+F+ +   +  +WN+I
Sbjct: 24  SQTILTGLITDPYAASRLINFSSH-STTLVPFH-------YSLRIFNHLRNPNTFTWNTI 75

Query: 202 IAAY-EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           + A+    N P  A   +     +  +PD  T   L    A        R +H   +  G
Sbjct: 76  MRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSG 135

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F  DV + N ++++YA  G + SA  VFE  PV D++SWNTL+ GY Q G   EA  VF
Sbjct: 136 -FDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVF 194

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M E N I  N                                         ++ ++G+
Sbjct: 195 EGMPERNTIASNS----------------------------------------MIALFGR 214

Query: 381 CGRIDDAMSLFYQV--PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            G ++ A  +F  V       V W+A++SC+  +  G++AL  F +M   GV  D +  V
Sbjct: 215 KGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVV 274

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S L+ACS    V  G R+ H +  + G++ ++     ++ L+   G +  A     +   
Sbjct: 275 SALSACSRVLNVEMG-RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGE 333

Query: 499 RPDASIWGALL 509
             D   W +++
Sbjct: 334 LLDLISWNSMI 344


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/619 (40%), Positives = 372/619 (60%), Gaps = 6/619 (0%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI---TVASILPVCARSDNIL 146
           P   +  +N ++  +  +G+  +AL +  EM L   S  P    T A  L  C+R   + 
Sbjct: 79  PPLSTPCYNVLMRAFLHAGHPEDALHLFIEM-LHAASACPADQHTAACALKSCSRMCALD 137

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +  Y VK GL  + FV ++LI+MYA  G +  A  VFD   E  VV WN+I+AAY 
Sbjct: 138 VGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYL 197

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           ++ D +     F  M + G+  D +TLVS+ +   ++ D +  + V G +   G      
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPK 257

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           ++  A++DMYAK G I  A  +F+G+  +DV++W+ +I+GY Q     EA+ +F  M+  
Sbjct: 258 LV-TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQ-L 315

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + PN  T VS+L A + +GAL  G  +H+ V +  L     + T LVD Y KCG IDD
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A+  F  +P  +S  W A+I     +G+G +AL  F  M + G+ P  +TF+ +L ACSH
Sbjct: 376 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSH 435

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           S LV EG+R+F  M  ++GIKP ++HYGCMVDL GRAG +  A+ FI+ MP+ P+A IW 
Sbjct: 436 SCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWR 495

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALL +C +H N+ +G  A  ++  ++  + G YVL+SNIYA+ G+W+    VR   +DRG
Sbjct: 496 ALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRG 555

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           ++KTPG S IE++  V  F+  +  HP+  +IY ++  +  ++K  GYVP+ + V  +VE
Sbjct: 556 IEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVE 615

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E EKE  ++ HSE+LAIAFG++   P + I++ KNLRVC DCH+ TK IS++ +REI+VR
Sbjct: 616 EREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVR 675

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D N FHHFKDG CSC DYW
Sbjct: 676 DRNIFHHFKDGTCSCNDYW 694



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 224/429 (52%), Gaps = 11/429 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRP-DFYTFPPVLKACRNLVD---GKKIHCSVLK 56
           ++  ++  G   +A+  F +    +   P D +T    LK+C  +     G+ +    +K
Sbjct: 89  LMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVK 148

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   D FV +SL+HMY   G    AR +FD         WNA+++ Y ++G+ +E +++
Sbjct: 149 RGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEM 208

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M   GV+ D +T+ S++  C R  +   G  +  ++ + GL  N  +   L++MYAK
Sbjct: 209 FKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAK 268

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A R+FD M  RDVV+W+++I+ Y Q++    A G F+ MQ A ++P+ +T+VS+
Sbjct: 269 CGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSV 328

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L      + VH ++ RR       I+G A+VD YAK G I+ A   FE +PVK+
Sbjct: 329 LSACAVLGALETGKWVHSYV-RRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKN 387

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
             +W  LI G A NG   EA+E+F  M E   I P   T++ +L A SH   + +G +  
Sbjct: 388 SWTWTALIKGMATNGRGREALELFSSMREAG-IEPTDVTFIGVLMACSHSCLVEEGRRHF 446

Query: 357 ARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH-- 412
             + ++  +   V    C+VD+ G+ G +D+A      +P   ++V W A++S   +H  
Sbjct: 447 DSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRN 506

Query: 413 -GQGDKALN 420
            G G++AL 
Sbjct: 507 VGIGEEALK 515


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 388/676 (57%), Gaps = 34/676 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM- 120
           ++F   +LL       L     +LF  MP RD+ S+NA+I+G+  +G+   ++ +   + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R E V    IT+++++ V +   +   G  +H  +++ G     FV + L++MYAK G++
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 181 RHALRVFDQ-------------------------------MMERDVVSWNSIIAAYEQSN 209
           R A RVF +                               M++RD ++W +++    Q+ 
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
             + A   F  M+  G+  D  T  S+ +    L      + +H +I R  W+ ++V +G
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT-WYEDNVFVG 316

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           +A+VDMY+K   I  A AVF  +  +++ISW  +I GY QN  + EA+  F  M + + I
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGI 375

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S++ + +++ +L +G + H   + + L   + V+  LV +YGKCG I+DA  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF ++     V W A+++ +   G+  + ++ F +ML  G++PD +TF+ +L+ACS +GL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGL 495

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G  YF  MQ++ GI P   HY CM+DL+ R+G    A  FI+ MP  PDA  W  LL
Sbjct: 496 VEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            +CR+ GNME+G  A++ L E D +N   YVL+ +++A  G+W  V  +R   RDR +KK
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S I+  NKV IF   +++HP   +IY++L  L +KM   GY PD S VL DV + +
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADAD 675

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K H+++ HSE+LAIAFG+I  P + PI+I KNLRVC DCHN TKFIS+IT R+I+VRD+ 
Sbjct: 676 KVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 735

Query: 690 RFHHFKDGICSCGDYW 705
           RFH F DG CSCGD+W
Sbjct: 736 RFHKFSDGTCSCGDFW 751



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 213/450 (47%), Gaps = 40/450 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ +   G  + +V  +        +RP   T   ++     L D   G  +HC VL+L
Sbjct: 116 LITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRL 175

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV-------------------------- 91
           GF    FV + L+ MY + GL   AR++F +M                            
Sbjct: 176 GFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 92  -----RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
                RDS +W  M++G  Q+G  +EALD+   MR EGV +D  T  SIL  C     + 
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALE 295

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  IH YI +   E N+FV + L++MY+K   +R A  VF +M  R+++SW ++I  Y 
Sbjct: 296 EGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYG 355

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q+     A   F+ MQ  GI+PD  TL S+ S  A L         H   +  G  M  +
Sbjct: 356 QNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG-LMRYI 414

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            + NA+V +Y K G I  A  +F+ +   D +SW  L+TGYAQ G A E I++F+ M   
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM-LA 473

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRI 384
           N + P+  T++ +L A S  G + +G      + K+   +  D    TC++D+Y + GR 
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY-TCMIDLYSRSGRF 532

Query: 385 DDAMSLFYQVPRS-SSVPWNAIISCHGIHG 413
            +A     Q+P S  +  W  ++S   + G
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 202/423 (47%), Gaps = 68/423 (16%)

Query: 151 IHLYIVKHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQ-------------------- 189
           +H  I+K  L+    F+ N+L+  YAK G +  A RVFD+                    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 190 -----------MMERDVVSWNSIIAAYEQSNDPITAHGFFTT-MQQAGIQPDLLTLVSLT 237
                      M ERD VS+N++I  +  +  P  +   +   +++  ++P  +TL ++ 
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-- 295
            + + L+D     SVH  ++R G F     +G+ +VDMYAK+G+I  A  VF+ +  K  
Sbjct: 154 MVASALSDRALGHSVHCQVLRLG-FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 296 -----------------------------DVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                                        D I+W T++TG  QNGL  EA++VF+ M   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRM-RA 271

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  +Q T+ SIL A   + AL +G +IHA + +     +VFV + LVDMY KC  I  
Sbjct: 272 EGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRL 331

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A ++F ++   + + W A+I  +G +   ++A+  F +M  +G++PD  T  S++++C++
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              + EG + FH +    G+  ++     +V L+G+ G +  AH     M      S W 
Sbjct: 392 LASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WT 449

Query: 507 ALL 509
           AL+
Sbjct: 450 ALV 452



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 23/369 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           M++   + G   EA+D F +     G+  D YTF  +L AC  L    +GK+IH  + + 
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +E +VFV ++L+ MY +     +A  +F  M  R+  SW AMI GY Q+  + EA+   
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAF 367

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+++G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 368 SEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M   D VSW +++  Y Q          F  M   G++PD +T + + 
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVL 487

Query: 238 S------IVAQLNDCRNS-RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           S      +V +  D  +S +  HG +     +         ++D+Y++ G    A    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIK 540

Query: 291 GLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSH 345
            +P   D   W TL++     G         + + E +  NP     +  + A    ++ 
Sbjct: 541 QMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTE 600

Query: 346 VGALRQGIK 354
           V  LR+G++
Sbjct: 601 VAHLRRGMR 609


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 399/727 (54%), Gaps = 72/727 (9%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           + H  +LK G + D +++A L+  Y  +   N A  +   +P     S++++I    ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              +++ +   M   G+  D   + ++  VCA       G  IH      GL+ + FV  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVV-------------------------------- 196
           ++ +MY + G M  A +VFD+M ++DVV                                
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 197 ---SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
              SWN I++ + +S     A   F  +   G  PD +T+ S+   V         R +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLG-------------------------------II 282
           G+++++G   +  +I +A++DMY K G                               ++
Sbjct: 276 GYVIKQGLLKDKCVI-SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 283 NSACAVFEGLPVK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
           + A  +FE    +    +V+SW ++I G AQNG   EA+E+F+ M+    + PN  T  S
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHVTIPS 393

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +LPA  ++ AL  G   H   ++  L  +V V + L+DMY KCGRI+ +  +F  +P  +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V WN++++   +HG+  + ++ F  ++   ++PD I+F SLL+AC   GL  EG +YF 
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           MM EE+GIKP L+HY CMV+L GRAG L  A++ I+ MP  PD+ +WGALL +CR+  N+
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           +L  +A+++LF ++ EN G YVL+SNIYA  G W  VD +R+     GLKK PG S I+V
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            N+V     G+++HP+ ++I +++  ++ +M+  G+ P+  F L DVEE E+E +L  HS
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHS 693

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LA+ FG++++P  +P+Q+ KNLR+CGDCH   KFIS    REI +RD+NRFHHFKDGI
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753

Query: 699 CSCGDYW 705
           CSCGD+W
Sbjct: 754 CSCGDFW 760



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFV 65
           G+  EA++ F +  + +G++P+  T P +L AC N+     G+  H   +++    +V V
Sbjct: 367 GKDIEALELFREMQV-AGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHV 425

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
            ++L+ MY + G  N+++ +F+ MP ++   WN++++G+   G A E + I + +    +
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRL 485

Query: 126 SMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
             D I+  S+L  C +      G     +   ++G++  L   + ++N+  + G ++ A 
Sbjct: 486 KPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAY 545

Query: 185 RVFDQM-MERDVVSWNSIIAAYEQSND 210
            +  +M  E D   W +++ +    N+
Sbjct: 546 DLIKEMPFEPDSCVWGALLNSCRLQNN 572


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/699 (37%), Positives = 404/699 (57%), Gaps = 12/699 (1%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAAS 68
           SE +  F++     G+ P+ +TF  VL A  +   L  G+++H   +K G    VFV  S
Sbjct: 183 SEVMALFFRMR-AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNS 241

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++MY + GL   A+ +F+ M  RD  SWN +++G   +   +EAL +  E R     M 
Sbjct: 242 LMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T A+++ +CA    +     +H  ++KHG      V   L + Y+K G +  AL +F 
Sbjct: 302 QSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFS 361

Query: 189 QMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
                R+VVSW +II+   Q+ D   A   F+ M++  + P+  T  ++  + A L+   
Sbjct: 362 MTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM--LKASLSIL- 418

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  +++   +     +G A++  Y+K G    A ++F+ +  KDV++W+ +++ +
Sbjct: 419 -PPQIHAQVIKTN-YQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCH 476

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCF 366
           AQ G    A  +F  M     I PN+ T  S++ A +   A + QG + HA  IK     
Sbjct: 477 AQAGDCEGATYLFNKMA-IQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            + V++ LV MY + G ID A  +F +      V WN++IS +  HG   KA+  FRQM 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G++ D +TF++++  C+H+GLV EGQ+YF  M  +  I P ++HY CMVDL+ RAG L
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
               + I++MP    A +W  LLGACR+H N+ELG  ++D+L  ++  +   YVL+SNIY
Sbjct: 656 DETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIY 715

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A  GKW+  DEVR L   R +KK  G S I++ NKV  F   +++HP  ++IY +L+ + 
Sbjct: 716 AAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVII 775

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K  GY P+ SFVL D+ ED+KE +L +HSERLA+AFG+I++PP +P+QI KNLRVCG
Sbjct: 776 TRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCG 835

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K +S I +REII+RD +RFHHF  G CSCGD+W
Sbjct: 836 DCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/576 (27%), Positives = 281/576 (48%), Gaps = 21/576 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLT--SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF 59
           Y R G + E +D   QF++    G+  D  T   VLKACR++ D   G+++HC  +K G 
Sbjct: 74  YARRGMVLEVLD---QFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGH 130

Query: 60  E-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +  +V    SL+ MY + G      ++F+ MP ++  +W ++++G   +    E + +  
Sbjct: 131 DRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFF 190

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            MR EG+  +P T AS+L   A    +  G  +H   VK G   ++FV N+L+NMYAK G
Sbjct: 191 RMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCG 250

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
           ++  A  VF+ M  RD+VSWN+++A  + +   + A   F   +    +    T  ++  
Sbjct: 251 LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIK 310

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE-GLPVKDV 297
           + A L     +R +H  +++ G+ +   ++  A+ D Y+K G +  A  +F      ++V
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVM-TALADAYSKCGELADALNIFSMTTGSRNV 369

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+G  QNG    A+ +F  M E + + PN+ TY ++L A   +       +IHA
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMRE-DRVMPNEFTYSAMLKASLSI----LPPQIHA 424

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +VIK       FV T L+  Y K G  +DA+S+F  + +   V W+A++SCH   G  + 
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A   F +M  +G++P+  T  S++ AC+      +  R FH +  ++     +     +V
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALV 544

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE---VDSE 534
            ++ R G++  A    +    R D   W +++     HG   + A+ + R  E   +  +
Sbjct: 545 SMYSRKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHG-YSMKAIETFRQMEASGIQMD 602

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            V +  ++     N    EG     S+ RD  +  T
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPT 638



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 157/345 (45%), Gaps = 3/345 (0%)

Query: 187 FDQMMERDV-VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
            D++  RD  V  N ++  Y +    +     F+  ++ G+  D  TL  +      + D
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
                 +H   ++ G    +V  G ++VDMY K G +     VFEG+P K+V++W +L+T
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           G A   + SE + +F  M     I PN  T+ S+L A +  GAL  G ++HA+ +K    
Sbjct: 175 GCAHAQMHSEVMALFFRMRA-EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCR 233

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             VFV   L++MY KCG ++DA S+F  +     V WN +++   ++    +AL  F + 
Sbjct: 234 SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES 293

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
                +    T+ +++  C++   ++   R  H    + G          + D + + G 
Sbjct: 294 RATMGKMTQSTYATVIKLCANLKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGE 352

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           L  A N         +   W A++  C  +G++ L  V   R+ E
Sbjct: 353 LADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/709 (35%), Positives = 396/709 (55%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKL 57
           +I  Y++  +  EA    Y      G+ PD+ T   +L     L       +IH  V+KL
Sbjct: 111 LIGGYLQSNQSKEAFR-LYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E+++ V  SL+  YC+     +A +LF  M  +D+ ++N++++GY   G   EA+++ 
Sbjct: 170 GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E+   G+     T A++L      D+   G  +H +++K    +N+FV N L++ Y+K 
Sbjct: 230 LELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +    ++F +M E D +S+N +I +Y  +     +   F  +Q            +L 
Sbjct: 290 DQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI     + R  R +H   +  G   E  +  NA+VDMYAK      A  +F+ +  K  
Sbjct: 350 SIATSSLNLRMGRQIHCQAITVGANFESRV-ENALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q G   E I VF  M     +  +Q T+ SIL A +++ ++  G ++H+
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTG-VPADQATFASILRACANLASISLGRQLHS 467

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I++    +V+  + L+D Y KCG + DA+  F ++P  +SV WNA+IS +  +G  D 
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            LN F+QM+  G +PD ++F+S+L+ACSH G V E   +F+ M + + + P  +HY  MV
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSENV 536
           D+  R G    A   +  MP  P   +W ++L +CRIH N EL   A+DRLF + D  + 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             Y+ MSNIYA  G+W+ V +V+   RDRG++K P +S +E+ ++  +F   +++HP+ +
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           KI  ++  L+ +M+  GY PD +  L DV+E  K   L  HSER AIAF ++++P  SPI
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K ISQI EREIIVRDS+RFHHFKDG+CSCGDYW
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 231/447 (51%), Gaps = 4/447 (0%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           + +FG  + AR+LFD M  R + SW  +I GY QS  + EA  +  +MR  G+  D +T+
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            ++L      +     + IH +++K G E+NL V N+L++ Y K   +  A ++F  M+ 
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +D V++NS++  Y        A   F  +  +GI+P   T  +L S    L+D +  + V
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HGF+++   F+ +V +GNA++D Y+K   ++    +F  +P  D IS+N +IT YA NG 
Sbjct: 264 HGFVLKTN-FVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQ 322

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E+ ++F+ + +    +  Q  + ++L   +    LR G +IH + I     F+  V  
Sbjct: 323 FKESFDLFRKL-QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LVDMY KC    +A  +F  +   S+VPW A+IS +   G+ ++ +N F  M   GV  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  TF S+L AC++   +S G R  H +    G   ++     ++D + + G +  A   
Sbjct: 442 DQATFASILRACANLASISLG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 493 IQNMPVRPDASIWGALLGACRIHGNME 519
              MP R   S W AL+ A   +GN++
Sbjct: 501 FGEMPERNSVS-WNALISAYAQNGNVD 526



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 186/380 (48%), Gaps = 15/380 (3%)

Query: 148 GLLIHLYIV------KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           G L+H + V      K+ +  N+ +S +L     KFG +  A  +FD M+ER  VSW  +
Sbjct: 57  GDLVHAHQVFDQMPAKNTISLNMMISGHL-----KFGKLSKARELFDGMVERTAVSWTIL 111

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y QSN    A   +  M++ GI+PD +TLV+L S   +L        +H  +++ G 
Sbjct: 112 IGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLG- 170

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           +  ++++ N++VD Y K   +  A  +F+ +  KD +++N+L+TGY+  GL  EAIE+F 
Sbjct: 171 YEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFL 230

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            +     I P+  T+ ++L A   +   + G ++H  V+K    ++VFV   L+D Y K 
Sbjct: 231 ELHNSG-IKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            ++D+   LF ++P    + +N +I+ +  +GQ  ++ + FR++           F +LL
Sbjct: 290 DQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +  + S  +  G R  H      G     +    +VD++ +      A     N+  +  
Sbjct: 350 SIATSSLNLRMG-RQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 502 ASIWGALLGACRIHGNMELG 521
              W A++ A    G  E G
Sbjct: 409 VP-WTAMISAYVQKGKHEEG 427


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/721 (36%), Positives = 393/721 (54%), Gaps = 78/721 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDE 119
           D+    +L+  Y   G   ++RK+F D P+  RDS  +NAMI+ Y  + +   A+++  +
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 120 MRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK-- 176
           M+ +    D  T  S+L   A  ++       +H  +VK G  F   V N LI+ Y K  
Sbjct: 138 MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCA 197

Query: 177 -------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF------------ 217
                    +M  A ++FD+M  RD +SW +II  Y ++ND   A  F            
Sbjct: 198 ASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAW 257

Query: 218 -------------------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
                              F  M  + IQ D  T  S+ S+ A     R  + +H + ++
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317

Query: 259 R-GWFMEDVI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY-------- 307
                  DV   + NA++  Y K G ++ A  +F  +P +D++SWN +++GY        
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE 377

Query: 308 -----------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
                                  AQ G A EA++ F  M+      P    +   + + S
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMK-LQGFEPCDYAFAGAIISCS 436

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +G+L+ G ++HA+V++      +     L+ MY +CG +D A  LF  +P   ++ WNA
Sbjct: 437 VLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNA 496

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+  G HGQG +A+  F +ML EG+ PD I+F+++++ACSH+GLV EG++YF  M   +
Sbjct: 497 MIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVY 556

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           G+ P  +HY  ++DL  RAG    A   +++MP  P A IW ALL  CRIHGN++LG  A
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEA 616

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           ++RLFE+  ++ G YVL+SN+YA  G+W  + +VR L RDRG+KK PG S IEV NKV  
Sbjct: 617 AERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHS 676

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+  HP+  +IY+ L  L  +M+ +GYVPD   VL DVE D KEH L++HSE+LA+A
Sbjct: 677 FLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVA 736

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           +G +  P  + +++FKNLR+CGDCHN  KF+S++  REI+VRD  RFHHF+DG CSCGDY
Sbjct: 737 YGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 796

Query: 705 W 705
           W
Sbjct: 797 W 797



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 240/532 (45%), Gaps = 92/532 (17%)

Query: 27  LRPDFYTFPPVLKACRNLVDGKK----IHCSVLKLGFEWDVFVAASLLHMYCR------- 75
            RPD YTF  VL A   + + +K    +HC+V+K G  +   V  +L+  Y +       
Sbjct: 143 FRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSA 202

Query: 76  --FGLANVARKLFDDMPVRDSGS-------------------------------WNAMIS 102
               L   ARKLFD+MP RD  S                               WNAMIS
Sbjct: 203 QSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMIS 262

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH---- 158
           GY   G  +EA ++  +M +  + +D  T  S++ VCA +     G  +H Y +K     
Sbjct: 263 GYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANP 322

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
             +  + V+N LI  Y K G +  A  +F++M ERD+VSWN I++ Y        A  FF
Sbjct: 323 APDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFF 382

Query: 219 TTMQQAGIQPDLLTLVSLTSI-------------------------------VAQLNDCR 247
             M +  I   ++ +  L  I                                + L   +
Sbjct: 383 NEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLK 442

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
           + R +H  ++R G +   +  GNA++ MYA+ G++++A  +F  +P  D ISWN +I   
Sbjct: 443 HGRQLHAQVVRYG-YESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAAL 501

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF- 366
            Q+G  ++AIE+F+ M +   I P++ ++++++ A SH G +++G K +   + N     
Sbjct: 502 GQHGQGTQAIELFEEMLK-EGILPDRISFLTVISACSHAGLVKEGRK-YFDSMHNVYGVN 559

Query: 367 -DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQ 424
            D      ++D+  + G+  +A  +   +P     P W A+++   IHG  D  +    +
Sbjct: 560 PDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAER 619

Query: 425 MLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           + +  ++P H  T+V L    + +G  ++  +   +M++  G+K   K  GC
Sbjct: 620 LFE--LKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDR-GVK---KEPGC 665



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 206/497 (41%), Gaps = 117/497 (23%)

Query: 133 ASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            S+L +C     I   L   +H +++  G +    + N LI++Y+K   + +A  +FD++
Sbjct: 15  GSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEI 74

Query: 191 MERDVVSWNSIIAAYEQSND-----------------------PITAHG----------F 217
            + D+V+  ++IAAY  + D                        ITA+            
Sbjct: 75  PQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIEL 134

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDC-RNSRSVHGFIMRRGW-FMEDVIIGNAVVDM 275
           F  MQ+   +PD  T  S+   +A + +  ++ + +H  +++ G  F+  V+  NA++  
Sbjct: 135 FCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVL--NALISS 192

Query: 276 YAK---------LGIINSACAVFEGLPVKDVISWNTLITGYAQN---------------- 310
           Y K           ++  A  +F+ +P +D +SW T+ITGY +N                
Sbjct: 193 YVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKK 252

Query: 311 ---------------GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
                          GL  EA E+F+ M   ++I  ++ T+ S++   ++ G  R G ++
Sbjct: 253 LGVAWNAMISGYAHRGLYLEAFEMFRKM-IMSKIQLDEFTFTSVISVCANAGCFRLGKEM 311

Query: 356 HARVIKNCL--CFDVF--VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH-- 409
           HA  +K       DV   V   L+  Y KCG++D A  +F ++P    V WN I+S +  
Sbjct: 312 HAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVN 371

Query: 410 ---------------------------GIH--GQGDKALNFFRQMLDEGVRPDHITFVSL 440
                                      G+   G  ++AL FF +M  +G  P    F   
Sbjct: 372 VRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGA 431

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           + +CS  G +  G R  H     +G +  L     ++ ++ R G +  AH    NMP   
Sbjct: 432 IISCSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-V 489

Query: 501 DASIWGALLGACRIHGN 517
           DA  W A++ A   HG 
Sbjct: 490 DAISWNAMIAALGQHGQ 506



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 28/220 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS   + G   EA+  F +  L  G  P  Y F   + +C    +L  G+++H  V++ 
Sbjct: 396 MISGLAQIGFAEEALKFFNRMKL-QGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRY 454

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E  +    +L+ MY R G+ + A  LF +MP  D+ SWNAMI+   Q G   +A+++ 
Sbjct: 455 GYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELF 514

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-----NLFVSN---- 168
           +EM  EG+  D I+  +++  C+           H  +VK G ++     N++  N    
Sbjct: 515 EEMLKEGILPDRISFLTVISACS-----------HAGLVKEGRKYFDSMHNVYGVNPDEE 563

Query: 169 ---NLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
               +I++  + G    A  V + M  E     W +++A 
Sbjct: 564 HYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAG 603


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/709 (38%), Positives = 402/709 (56%), Gaps = 17/709 (2%)

Query: 9   GRLSEAVDCFYQ-FTLTSGLRPDFYTFP--PVLK-------ACRNLVDGKKIHCSVLKLG 58
           G +S  V  + Q FT      P F+ F   P LK         ++L    +IH  ++   
Sbjct: 68  GPMSREVAFWLQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTN 127

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG--SWNAMISGYCQSGNAVEALDI 116
               +    +LL +Y + G  +    LF+  P   +   +W  +I+   +S    +AL  
Sbjct: 128 NHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTF 187

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            + MR  G+  +  T ++ILP CA +  +  G  IH  I KH    + FV+  L++MYAK
Sbjct: 188 FNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAK 247

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G M  A  VFD+M  R++VSWNS+I  + ++     A G F  +   G  PD +++ S+
Sbjct: 248 CGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSV 305

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L +    + VHG I++RG  +  V + N++VDMY K G+   A  +F G   +D
Sbjct: 306 LSACAGLVELDFGKQVHGSIVKRG-LVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRD 364

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V++WN +I G  +     +A   FQ M     + P++ +Y S+  A + + AL QG  IH
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIR-EGVEPDEASYSSLFHASASIAALTQGTMIH 423

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           + V+K     +  +++ LV MYGKCG + DA  +F +    + V W A+I+    HG  +
Sbjct: 424 SHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCAN 483

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +ML+EGV P++ITFVS+L+ACSH+G + +G +YF+ M     IKP L+HY CM
Sbjct: 484 EAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACM 543

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GR G L  A  FI++MP  PD+ +WGALLGAC  H N+E+G   ++RLF+++ +N 
Sbjct: 544 VDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNP 603

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y+L+SNIY   G  E  DEVR L    G++K  G S I+V N+  +F   +R+H + +
Sbjct: 604 GNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQ 663

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY  L+ L   +K  GYV +  F    VE  E E  L  HSE+LA+AFG++  PP SP+
Sbjct: 664 EIYGMLQKLKELIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALAFGLLVLPPGSPV 722

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLR CGDCH   KF S+I +REIIVRD NRFH F +G CSC DYW
Sbjct: 723 RIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/605 (38%), Positives = 373/605 (61%), Gaps = 10/605 (1%)

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           + +C   +   A+  +D M   GV  D IT + ++  C+    +  G  +H +I   G E
Sbjct: 28  ANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYE 87

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS-NDPITAHGFFTT 220
             +FV N L+NMY KF ++  A  +FD+M ER+VVSW ++I+AY    ND   A      
Sbjct: 88  PKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLND--KALKCLIL 145

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M + G++P++ T    +S++   +   N R +H  I++ G    DV + +A++D+Y+K  
Sbjct: 146 MFREGVRPNMFTY---SSVLRACDGLPNLRQLHCGIIKTG-LESDVFVRSALIDVYSKWS 201

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +++A  VF+ +P +D++ WN++I G+AQN   +EA+ +F+ M+    +  +Q T  S+L
Sbjct: 202 DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL-ADQATLTSVL 260

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A + +  L  G ++H  V+K     D+ +   L+DMY KCG ++DA S F ++     +
Sbjct: 261 RACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVI 318

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W+ +++    +G   +AL  F  M + G RP++IT + +L ACSH+GLV +G  YF  M
Sbjct: 319 SWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSM 378

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           ++ FG+ P  +HYGC++DL GRAG L  A   I  M   PD+  W  LLGACR+H N++L
Sbjct: 379 KKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDL 438

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
              A+ ++ E++ E+ G Y+L+SNIYAN  +WE V EVR    +RG++KTPG S IEV+ 
Sbjct: 439 AIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDK 498

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           ++ +F  G+ +HPK E+I   L +L  ++  +GYVPD +FVLQD+E ++KE  L  HSE+
Sbjct: 499 QIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEK 558

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LAI FG+++   +  ++I KNLR+CGDCH + K +S++  R I++RD  R+HHF+DG+CS
Sbjct: 559 LAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCS 618

Query: 701 CGDYW 705
           CGDYW
Sbjct: 619 CGDYW 623



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 227/408 (55%), Gaps = 15/408 (3%)

Query: 26  GLRPDFYTFPPVLKAC--RNLV-DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+  D  T+  ++K C  R  V +GK++H  +   G+E  +FV  +LL+MY +F L   A
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             LFD+MP R+  SW  MIS Y    N  +AL  L  M  EGV  +  T +S+L  C   
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYSNKLND-KALKCLILMFREGVRPNMFTYSSVLRAC--- 165

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           D + +   +H  I+K GLE ++FV + LI++Y+K+  + +AL VFD+M  RD+V WNSII
Sbjct: 166 DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSII 225

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             + Q++D   A   F  M++AG   D  TL S+      L      R VH  +++   F
Sbjct: 226 GGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK---F 282

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            +D+I+ NA++DMY K G +  A + F  +  KDVISW+T++ G AQNG + +A+E+F+ 
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGK 380
           M+E     PN  T + +L A SH G + +G   + R +K     D       CL+D+ G+
Sbjct: 343 MKESGS-RPNYITVLGVLFACSHAGLVEKGW-YYFRSMKKLFGVDPGREHYGCLIDLLGR 400

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            GR+D+A+ L +++     SV W  ++    +H   D A+   +++++
Sbjct: 401 AGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 172/317 (54%), Gaps = 29/317 (9%)

Query: 1   MISVYVRCGRLSE-AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF 59
           MIS Y    +L++ A+ C        G+RP+ +T+  VL+AC  L + +++HC ++K G 
Sbjct: 127 MISAY--SNKLNDKALKCLI-LMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGL 183

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E DVFV ++L+ +Y ++   + A  +FD+MP RD   WN++I G+ Q+ +  EAL++   
Sbjct: 184 ESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKR 243

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M+  G   D  T+ S+L  C     +  G  +H++++K   + +L ++N LI+MY K G 
Sbjct: 244 MKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGS 301

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A   F +M+E+DV+SW++++A   Q+     A   F +M+++G +P+ +T++ +   
Sbjct: 302 LEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFA 361

Query: 240 VAQLNDCRNSRSVHGFIMRRGWF----MEDVIIGN-------AVVDMYAKLGIINSACAV 288
            +           H  ++ +GW+    M+ +   +        ++D+  + G ++ A  +
Sbjct: 362 CS-----------HAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKL 410

Query: 289 FEGLPVK-DVISWNTLI 304
              +  + D ++W TL+
Sbjct: 411 IHEMECEPDSVTWRTLL 427


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/753 (34%), Positives = 417/753 (55%), Gaps = 84/753 (11%)

Query: 32  YTFPPVLKACRNLVDGKKIHCSVLKLGF---------EWDVFVAASLLHMYCRFGLANVA 82
           + F P       L+D   ++C   +L +         E D     +++  YC  G   +A
Sbjct: 43  FGFQPHAHILNRLID---VYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALA 99

Query: 83  RKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           R +F++ PV  RD+  +NAMI+G+  + +   A+++  +M+ EG   D  T AS+L   A
Sbjct: 100 RSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLA 159

Query: 141 RS-DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG----MMRHALRVFDQMMERDV 195
              D+    +  H   +K G  +   VSN L+++Y++      ++  A +VFD + E+D 
Sbjct: 160 LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDE 219

Query: 196 VSWNSIIAAYEQS---------------NDPITAHGFFTT-----------------MQQ 223
            SW +++  Y ++               N  + A+    +                 M  
Sbjct: 220 RSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVS 279

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +GI+ D  T  S+    A     +  + VH +++RR  F       N++V +Y K G  N
Sbjct: 280 SGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF--SFHFDNSLVTLYYKCGKFN 337

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------------- 330
            A A+FE +P KD++SWN L++GY  +G   EA  +F+ M+E N ++             
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397

Query: 331 -----------------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
                            P    +   + + + +GA   G + HA+++K      +     
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNA 457

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY KCG +++A  +F  +P   SV WNA+I+  G HG G +A++ + +ML +G+RPD
Sbjct: 458 LITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPD 517

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            ITF+++LTACSH+GLV +G++YF+ M+  + I P   HY  ++DL  R+G    A + I
Sbjct: 518 RITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESII 577

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           +++P +P A IW ALL  CR+HGNMELG +A+D+LF +  E+ G Y+L+SN+YA  G+WE
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWE 637

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V  VR L RDRG+KK    S IE+  +V  F   + +HP+ E +Y  L++L  +M+ LG
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLG 697

Query: 614 YVPDKSFVLQDVEED-EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           YVPD SFVL DVE D  KE +LT+HSE++A+AFG++  PP + I+IFKNLR CGDCHN+ 
Sbjct: 698 YVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFF 757

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +F+S++ +R+II+RD  RFHHF++G CSCG++W
Sbjct: 758 RFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 238/521 (45%), Gaps = 84/521 (16%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKK----IHCSVLKLGFEWDVFVAASLLHMYCRFG---- 77
           G +PD +T+  VL     +VD +K     H + LK G  +   V+ +L+ +Y R      
Sbjct: 143 GFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPS 202

Query: 78  LANVARKLFDDMPVRDSGSW--------------------------------NAMISGYC 105
           L + ARK+FDD+P +D  SW                                NAMISGY 
Sbjct: 203 LLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYV 262

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
             G   EAL+++  M   G+ +D  T  S++  CA +  +  G  +H Y+++   +F+  
Sbjct: 263 NCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFH 321

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN---------------- 209
             N+L+ +Y K G    A  +F++M  +D+VSWN++++ Y  S                 
Sbjct: 322 FDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 210 --------DPITAHGF-------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
                     +  +GF       F+ M++ G +P            A L    N +  H 
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHA 441

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            +++ G F   +  GNA++ MYAK G++  A  VF  +P  D +SWN LI    Q+G   
Sbjct: 442 QLVKIG-FDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGV 500

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH---ARVIKNCLCFDVFVA 371
           EA++V++ M +   I P++ T++++L A SH G + QG K       V +     D +  
Sbjct: 501 EAVDVYEEMLK-KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYAR 559

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
             L+D+  + G+  +A S+   +P + ++  W A++S   +HG  +  +    ++   G+
Sbjct: 560 --LIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--GL 615

Query: 431 RPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            P+H  T++ L    + +G   E  R   +M++  G+K  +
Sbjct: 616 IPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDR-GVKKEV 655



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 187/406 (46%), Gaps = 71/406 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK- 56
           MIS YV CG   EA++   +  ++SG+  D +T+P V++AC N   L  GK++H  VL+ 
Sbjct: 257 MISGYVNCGLYQEALEMVRRM-VSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRR 315

Query: 57  --LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
               F +D     SL+ +Y + G  N AR +F+ MP +D  SWNA++SGY  SG+  EA 
Sbjct: 316 EDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAK 371

Query: 115 DILDEMR--------------------LEGVSM---------DPITVA--SILPVCARSD 143
            I  EM+                     EG+ +         +P   A    +  CA   
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
              +G   H  +VK G + +L   N LI MYAK G++  A +VF  M   D VSWN++IA
Sbjct: 432 AYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIA 491

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF- 262
           A  Q    + A   +  M + GI+PD +T +++      L  C ++  V      R +F 
Sbjct: 492 ALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTV------LTACSHAGLVD---QGRKYFN 542

Query: 263 -MEDVIIGNAVVDMYAKL-------GIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLA 313
            ME V       D YA+L       G  + A ++ E LP K     W  L++G   +G  
Sbjct: 543 SMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNM 602

Query: 314 SEAI----EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              I    ++F ++ E      + GTY+ +   Y+  G   +  ++
Sbjct: 603 ELGIIAADKLFGLIPE------HDGTYMLLSNMYAATGQWEEVARV 642



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 191/468 (40%), Gaps = 106/468 (22%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------ 192
           +H  I+  G + +  + N LI++Y K   + +A ++FD++ E                  
Sbjct: 36  VHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 193 ---------------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-L 236
                          RD V +N++I  +  +ND  +A   F  M+  G +PD  T  S L
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL 155

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG----IINSACAVFEGL 292
             +   ++D +     H   ++ G       + NA+V +Y++      +++SA  VF+ +
Sbjct: 156 AGLALVVDDEKQCVQFHAAALKSGAGYV-TSVSNALVSVYSRCASSPSLLHSARKVFDDI 214

Query: 293 PVKDVISWNTLITGYAQN--------------------------------GLASEAIEVF 320
           P KD  SW T++TGY +N                                GL  EA+E+ 
Sbjct: 215 PEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMV 274

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M     I  ++ TY S++ A ++   L+ G ++HA V++    F       LV +Y K
Sbjct: 275 RRMVSSG-IELDEFTYPSVIRACANARLLQLGKQVHAYVLRR-EDFSFHFDNSLVTLYYK 332

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCH------------------------------- 409
           CG+ ++A ++F ++P    V WNA++S +                               
Sbjct: 333 CGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGL 392

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
             +G G++ L  F  M  EG  P    F   + +C+  G    GQ+ FH    + G    
Sbjct: 393 AENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-FHAQLVKIGFDSS 451

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           L     ++ ++ + G +  A    + MP   D+  W AL+ A   HG+
Sbjct: 452 LSAGNALITMYAKCGVVEEAQQVFRTMPCL-DSVSWNALIAALGQHGH 498


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/708 (37%), Positives = 395/708 (55%), Gaps = 41/708 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDS 94
           + + C +    K+IH  +L+     D + A+ L     +  F   + ARK+FD +P  + 
Sbjct: 145 LFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNL 204

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIH 152
            SWN +I     S + ++++ +   M L      P   T   ++   A     L G  +H
Sbjct: 205 YSWNILIRALATSSDPIQSVLVFIRM-LHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSN 209
              +K     ++FV N+LI+ YA  G +  A  VF +M+E   +D+VSWNS++  + Q  
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF-EMIEGNNKDIVSWNSMVTGFVQGG 322

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR----------- 258
            P  A   F  M+  G+ P+ +T+VS+ S  A+  +    R V  +I R           
Sbjct: 323 YPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCN 382

Query: 259 ---------------RGWF--ME--DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                          RG F  ME  DV+    ++D YAK+     A  +F+ +P KD+ +
Sbjct: 383 ATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPA 442

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WN LI+GY Q+G   EA+ +F+ ++       P+Q T +S L A + +GA+  G  IH  
Sbjct: 443 WNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGY 502

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           + K  +  +  +AT L+DMY K G ++ A+ +F+ +       W+A+I+   +HG+G+ A
Sbjct: 503 IKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAA 562

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           +  F  M +  V+P+ +TF +LL ACSHSGLV EG+R F  M+  +G+ P  KHY CMVD
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVD 622

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           + GRAGHL  A  FI+ MP+ P AS+WGALLGAC IHGN+EL   A  RL E++  N G 
Sbjct: 623 VLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGA 682

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SN+YA  G WEGV E+R   RD GLKK  G SSIE++  V  F  G+  HP    I
Sbjct: 683 YVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDI 742

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDE-KEHILTSHSERLAIAFGIISSPPKSPIQ 657
           Y +L  + A+++S GYV +   +LQ VEE+E KE  L  HSE++AIAFG+I +  +  I+
Sbjct: 743 YAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIR 802

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCH   K +S++  R+I++RD  RFHHF  G CSC DYW
Sbjct: 803 IVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLT-SGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLK 56
           +IS Y + GR  EA+  F +  LT SG RPD  T    L AC  L  +D G+ IH  + K
Sbjct: 446 LISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK 505

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              + +  +A SL+ MY + G    A ++F  +  +D   W+AMI+G    G    A+++
Sbjct: 506 ERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIEL 565

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYA 175
             +M+   V  + +T  ++L  C+ S  +  G  +   + + +G+       + ++++  
Sbjct: 566 FLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLG 625

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  AL+  + M +      W +++ A
Sbjct: 626 RAGHLEEALKFIEGMPLAPSASVWGALLGA 655


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 405/693 (58%), Gaps = 12/693 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+  L  G RPD +TFP V+K C  L    +G+  H  V+KLG E DV+   SL+  Y +
Sbjct: 95  YRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAK 154

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR--LEGVSMDPITVA 133
            GL   A ++FD MPVRD  +WN M+ GY  +G    AL    EM   LE V  D + + 
Sbjct: 155 LGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALE-VQHDSVGII 213

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           + L  C    + + G  IH Y+++HGLE ++ V  +L++MY K G + +A  VF  M  R
Sbjct: 214 AALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
            VV+WN +I  Y  +  P  A   F  M+  G+Q +++T ++L +  AQ       RSVH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G+++RR  F+  V++  A+++MY K+G + S+  +F  +  K ++SWN +I  Y    + 
Sbjct: 334 GYVVRR-QFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMY 392

Query: 314 SEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           +EAI +F  +E  N+ + P+  T  +++PA+  +G+LR   +IH+ +I      +  +  
Sbjct: 393 TEAITLF--LELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMN 450

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            ++ MY + G +  +  +F ++     + WN +I  + IHGQG  AL  F +M   G++P
Sbjct: 451 AVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQP 510

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           +  TFVS+LTACS SGLV EG  +F++M +E+G+ P ++HYGCM DL GR G L     F
Sbjct: 511 NESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQF 570

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I++MP+ P + +WG+LL A R   ++++   A++R+F+++ +N G Y+++S++YA+ G+W
Sbjct: 571 IESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRW 630

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           E V+ VR L +++GL++T   S +E+++    F  G+ +H +   I++    L+ K+K  
Sbjct: 631 EDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKET 690

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
               ++S+ +          +   HS RLA+ FG+ISS   SPI + KN+R+C  CH+  
Sbjct: 691 DDTRNQSYPVPVATRTTT--MPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHAL 748

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K IS+ + R I+V DS  +H F DG C CGDYW
Sbjct: 749 KLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 201/421 (47%), Gaps = 5/421 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N MI G+  +G    AL     M  +G   D  T   ++  CAR   +  G   H  ++K
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIK 135

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GLE +++  N+L+  YAK G++  A RVFD M  RD+V+WN ++  Y  +     A   
Sbjct: 136 LGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALAC 195

Query: 218 FTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           F  M  A  +Q D + +++  +           + +HG+++R G   +D+ +G +++DMY
Sbjct: 196 FQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHG-LEQDIKVGTSLLDMY 254

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G +  A +VF  +P++ V++WN +I GYA N    EA + F  M     +     T 
Sbjct: 255 CKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQM-RAEGLQVEVVTA 313

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           +++L A +   +   G  +H  V++      V + T L++MYGK G+++ +  +F ++  
Sbjct: 314 INLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIAN 373

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            + V WN +I+ +       +A+  F ++L++ + PD+ T  +++ A    G +    R 
Sbjct: 374 KTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC-RQ 432

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H      G   +      ++ ++ R+G +  +      M V  D   W  ++    IHG
Sbjct: 433 IHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM-VSKDVISWNTMIMGYAIHG 491

Query: 517 N 517
            
Sbjct: 492 Q 492



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 170/321 (52%), Gaps = 4/321 (1%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           S +L+   A  G M  A+     +   D    N +I  +  +  P  A   +  M + G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD  T   +    A+L      R+ HG +++ G    DV   N++V  YAKLG++  A 
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLG-LEHDVYTCNSLVAFYAKLGLVEDAE 162

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+G+PV+D+++WN ++ GY  NGL S A+  FQ M +  E+  +    ++ L A    
Sbjct: 163 RVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +  QG +IH  VI++ L  D+ V T L+DMY KCG +  A S+F  +P  + V WN +I
Sbjct: 223 FSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMI 282

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFG 465
             + ++ + D+A + F QM  EG++ + +T ++LL AC+ +     G+  + ++++ +F 
Sbjct: 283 GGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQF- 341

Query: 466 IKPHLKHYGCMVDLFGRAGHL 486
             PH+     +++++G+ G +
Sbjct: 342 -LPHVVLETALLEMYGKVGKV 361



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GR+D+A+     V    +   N +I      G    AL  +R ML++G RPD  TF  ++
Sbjct: 55  GRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVV 114

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             C+  G + EG R  H M  + G++  +     +V  + + G +  A      MPVR D
Sbjct: 115 KCCARLGGLDEG-RAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVR-D 172

Query: 502 ASIWGALL 509
              W  ++
Sbjct: 173 IVTWNIMV 180


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/699 (37%), Positives = 404/699 (57%), Gaps = 12/699 (1%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAAS 68
           SE +  F++     G+ P+ +TF  VL A  +   L  G+++H   +K G    VFV  S
Sbjct: 183 SEVMALFFRMR-AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNS 241

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++MY + GL   A+ +F+ M  RD  SWN +++G   +   +EAL +  E R     M 
Sbjct: 242 LMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T A+++ +CA    +     +H  ++KHG      V   L + Y+K G +  AL +F 
Sbjct: 302 QSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFS 361

Query: 189 QMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
                R+VVSW +II+   Q+ D   A   F+ M++  + P+  T  ++  + A L+   
Sbjct: 362 MTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM--LKASLSIL- 418

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  +++   +     +G A++  Y+K G    A ++F+ +  KDV++W+ +++ +
Sbjct: 419 -PPQIHAQVIKTN-YQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCH 476

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCF 366
           AQ G    A  +F  M     I PN+ T  S++ A +   A + QG + HA  IK     
Sbjct: 477 AQAGDCEGATYLFNKMA-IQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            + V++ LV MY + G ID A  +F +      V WN++IS +  HG   KA+  FRQM 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             G++ D +TF++++  C+H+GLV EGQ+YF  M  +  I P ++HY CMVDL+ RAG L
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
               + I++MP    A +W  LLGACR+H N+ELG  ++D+L  ++  +   YVL+SNIY
Sbjct: 656 DETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIY 715

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A  GKW+  DEVR L   R +KK  G S I++ NKV  F   +++HP  ++IY +L+ + 
Sbjct: 716 AAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVII 775

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K  GY P+ SFVL D+ ED+KE +L +HSERLA+AFG+I++PP +P+QI KNLRVCG
Sbjct: 776 TRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCG 835

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K +S I +REII+RD +RFHHF  G CSCGD+W
Sbjct: 836 DCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 158/576 (27%), Positives = 280/576 (48%), Gaps = 21/576 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLT--SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF 59
           Y R G + E +D   QF++    G+  D  T   VLKACR++ D   G+++HC  +K G 
Sbjct: 74  YARRGMVPEVLD---QFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGH 130

Query: 60  E-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +  +V    SL+ MY + G      ++F+ MP ++  +W ++++G   +    E + +  
Sbjct: 131 DRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFF 190

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            MR EG+  +P T AS+L   A    +  G  +H   VK G   ++FV N+L+NMYAK G
Sbjct: 191 RMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCG 250

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
           ++  A  VF+ M  RD+VSWN+++A  + +   + A   F   +    +    T  ++  
Sbjct: 251 LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIK 310

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE-GLPVKDV 297
           + A L     +R +H  +++ G+ +   ++  A+ D Y+K G +  A  +F      ++V
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVM-TALADAYSKCGELADALNIFSMTTGSRNV 369

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+G  QNG    A+ +F  M E + + PN+ TY ++L A   +       +IHA
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMRE-DRVMPNEFTYSAMLKASLSI----LPPQIHA 424

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +VIK        V T L+  Y K G  +DA+S+F  + +   V W+A++SCH   G  + 
Sbjct: 425 QVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A   F +M  +G++P+  T  S++ AC+      +  R FH +  ++     +     +V
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALV 544

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE---VDSE 534
            ++ R G++  A    +    R D   W +++     HG   + A+ + R  E   +  +
Sbjct: 545 SMYSRKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHG-YSMKAIETFRQMEASGIQMD 602

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            V +  ++     N    EG     S+ RD  +  T
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPT 638


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/666 (38%), Positives = 380/666 (57%), Gaps = 41/666 (6%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           +Y    L + + +LF+ +    + +W ++I  Y   G   ++L     M   G+  D   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------ 185
             S+L  CA   ++  G  +H YI++ GL+F+L+  N L+NMY+K   +  + R      
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 186 -VFDQMMER-------------------------DVVSWNSIIAAYEQSNDPITAHGFFT 219
            VFD+M ER                         D+VSWN+IIA   ++           
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            M  A ++PD  TL S+  ++A+  D    + +HG  +R+G    D+ + ++++DMYAK 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG-LDADIYVASSLIDMYAKC 287

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
             +  +C VF  L  +D ISWN++I G  QNGL  E +  F+ M    +I P   ++ SI
Sbjct: 288 TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMA-KIKPKSYSFSSI 346

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           +PA +H+  L  G ++H  + +N    ++F+A+ LVDMY KCG I  A  +F ++     
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W A+I    +HGQ   A+  F QM  EG++       ++LTACSH GLV E  +YF+ 
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNS 459

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M  +FGI P ++HY  + DL GRAG L  A++FI  M + P  SIW  LL ACR+H N++
Sbjct: 460 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNID 519

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +    ++R+ EVD  N G Y+L++NIY+   +W+   + R+  R  G++KTP  S IEV 
Sbjct: 520 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 579

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
           NKV  F  G+ +HP YEKI + +  L   M+  GYVPD S V  DVEE++K++++ SHSE
Sbjct: 580 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSE 639

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           RLAI FGII++P    I++ KNLRVC DCH  TKFIS+I  REI+VRD++RFHHFK+G C
Sbjct: 640 RLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTC 699

Query: 700 SCGDYW 705
           SCGDYW
Sbjct: 700 SCGDYW 705



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 228/448 (50%), Gaps = 58/448 (12%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC----- 74
           L SGL PD   FP VLK+C  L+D   G+ +H  ++++G ++D++   +L++MY      
Sbjct: 98  LASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL 157

Query: 75  ------RFGLANV---------------------ARKLFDDMPVRDSGSWNAMISGYCQS 107
                 R G   V                      RK+F+ MP +D  SWN +I+G  ++
Sbjct: 158 EESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARN 217

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
           G   E L ++ EM    +  D  T++S+LP+ A + +I  G  IH   ++ GL+ +++V+
Sbjct: 218 GLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVA 277

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           ++LI+MYAK   +  + RVF  + ERD +SWNSIIA   Q+        FF  M  A I+
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIK 337

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           P   +  S+    A L      + +HG+I R G F E++ I +++VDMYAK G I +A  
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG-FDENIFIASSLVDMYAKCGNIRTAKQ 396

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ + ++D++SW  +I G A +G A +AIE+F+ ME        +G   ++L A SH G
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQME-------TEGIK-AVLTACSHGG 448

Query: 348 ALRQGIKIHARVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAMSLF--YQVPRSSS 399
            + +  K       N +  D  +A        + D+ G+ GR+++A        +  + S
Sbjct: 449 LVDEAWKYF-----NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGS 503

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + W  ++S   +H   D A     ++L+
Sbjct: 504 I-WATLLSACRVHKNIDMAEKVANRILE 530



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 21/341 (6%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           + L+PD +T   VL      VD   GK+IH   ++ G + D++VA+SL+ MY +      
Sbjct: 233 ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           + ++F  +  RD  SWN++I+G  Q+G   E L    +M +  +     + +SI+P CA 
Sbjct: 293 SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAH 352

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G  +H YI ++G + N+F++++L++MYAK G +R A ++FD+M  RD+VSW ++
Sbjct: 353 LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAM 412

Query: 202 I---AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           I   A + Q+ D I     F  M+  GI+  +LT  S   +V +     NS      + R
Sbjct: 413 IMGCALHGQAPDAIE---LFEQMETEGIKA-VLTACSHGGLVDEAWKYFNS------MTR 462

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLASEAI 317
                  V    AV D+  + G +  A     G+ +    S W TL++    +     A 
Sbjct: 463 DFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAE 522

Query: 318 EVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHA 357
           +V   +    E++PN  G Y+ +   YS     ++  K  A
Sbjct: 523 KVANRIL---EVDPNNTGAYILLANIYSAARRWKEAAKWRA 560



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+  V+ G   E +  F Q  L + ++P  Y+F  ++ AC +L     GK++H  + + 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 369

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++F+A+SL+ MY + G    A+++FD M +RD  SW AMI G    G A +A+++ 
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELF 429

Query: 118 DEMRLEGV 125
           ++M  EG+
Sbjct: 430 EQMETEGI 437


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/709 (35%), Positives = 396/709 (55%), Gaps = 7/709 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKL 57
           +I  Y++  +  EA    Y      G+ PD+ T   +L     L       +IH  V+KL
Sbjct: 111 LIGGYLQSNQSKEAFR-LYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E+++ V  SL+  YC+     +A +LF  M  +D+ ++N++++GY   G   EA+++ 
Sbjct: 170 GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E+   G+     T A++L      D+   G  +H +++K    +N+FV N L++ Y+K 
Sbjct: 230 LELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +    ++F +M E D +S+N +I +Y  +     +   F  +Q            +L 
Sbjct: 290 DQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI     + R  R +H   +  G   E  +  NA+VDMYAK      A  +F+ +  K  
Sbjct: 350 SIATSSLNLRMGRQIHCQAITVGANFESRV-ENALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q G   E I VF  M     +  +Q T+ SIL A +++ ++  G ++H+
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTG-VPADQATFASILRACANLASISLGRQLHS 467

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I++    +V+  + L+D Y KCG + DA+  F ++P  +SV WNA+IS +  +G  D 
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            LN F+QM+  G +PD ++F+S+L+ACSH G V E   +F+ M + + + P  +HY  MV
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV-DSENV 536
           D+  R G    A   +  MP  P   +W ++L +CRIH N EL   A+DRLF + D  + 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             Y+ MSNIYA  G+W+ V +V+   RDRG++K P +S +E+ ++  +F   +++HP+ +
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           KI  ++  L+ +M+  GY PD +  L DV+E  K   L  HSER AIAF ++++P  SPI
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K ISQI EREIIVRDS+RFHHFKDG+CSCGDYW
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 231/447 (51%), Gaps = 4/447 (0%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           + +FG  + AR+LFD M  R + SW  +I GY QS  + EA  +  +MR  G+  D +T+
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            ++L      +     + IH +++K G E+NL V N+L++ Y K   +  A ++F  M+ 
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +D V++NS++  Y        A   F  +  +GI+P   T  +L S    L+D +  + V
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HGF+++   F+ +V +GNA++D Y+K   ++    +F  +P  D IS+N +IT YA NG 
Sbjct: 264 HGFVLKTN-FVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQ 322

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E+ ++F+ + +    +  Q  + ++L   +    LR G +IH + I     F+  V  
Sbjct: 323 FKESFDLFRKL-QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LVDMY KC    +A  +F  +   S+VPW A+IS +   G+ ++ +N F  M   GV  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  TF S+L AC++   +S G R  H +    G   ++     ++D + + G +  A   
Sbjct: 442 DQATFASILRACANLASISLG-RQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 493 IQNMPVRPDASIWGALLGACRIHGNME 519
              MP R   S W AL+ A   +GN++
Sbjct: 501 FGEMPERNSVS-WNALISAYAQNGNVD 526



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 187/380 (49%), Gaps = 15/380 (3%)

Query: 148 GLLIHLYIV------KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           G L+H + V      K+ +  N+ +S +L     KFG +  A  +FD M+ER  VSW  +
Sbjct: 57  GDLVHAHQVFDQMPAKNTISLNMMISGHL-----KFGKLSKARELFDGMVERTAVSWTIL 111

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y QSN    A   +  M++ GI+PD +TLV+L S   +L        +H  +++ G 
Sbjct: 112 IGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLG- 170

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           +  ++++ N++VD Y K   +  A  +F+ +  KD +++N+L+TGY+  GL  EAIE+F 
Sbjct: 171 YEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFL 230

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            +     I P+  T+ ++L A   +   + G ++H  V+K    ++VFV   L+D Y K 
Sbjct: 231 ELHNSG-IKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            ++D+   LFY++P    + +N +I+ +  +GQ  ++ + FR++           F +LL
Sbjct: 290 DQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +  + S  +  G R  H      G     +    +VD++ +      A     N+  +  
Sbjct: 350 SIATSSLNLRMG-RQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 502 ASIWGALLGACRIHGNMELG 521
              W A++ A    G  E G
Sbjct: 409 VP-WTAMISAYVQKGKHEEG 427


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 360/578 (62%), Gaps = 3/578 (0%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T    L  CAR  ++  G  +       G + ++FV ++L+++YA++G M  A++VF
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
            +M  RD V+W++++A +  +  P+ A   +  M++ G++ D + ++ +        + R
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
              SVHG ++R G  M DV+   ++VDMYAK G+++ AC VF  +  ++ +SW+ +I+G+
Sbjct: 227 MGASVHGHLLRHGMRM-DVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           AQNG + EA+ +F+ M+  + I P+ G  VS L A S++G L+ G  +H  +++    F+
Sbjct: 286 AQNGQSDEALRLFRNMQ-ASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFN 343

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             + T  +DMY KCG +  A  LF  +     + WNA+I+C G HG+G  AL  F++M +
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+RPDH TF SLL+A SHSGLV EG+ +F  M   F I P  KHY C+VDL  R+G + 
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A + + +M   P  +IW ALL  C  +  +ELG   +D + E+  ++VG   L+SN+YA
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
              KW+ V +VR L +D G KK PG SSIE+     +F   +++HP+ E+I  ++  L  
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDL 583

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           +M+ +GY+P   FV  D+EE+ KE  L+ HSERLAIAFG++++ P + + I KNLRVCGD
Sbjct: 584 EMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K+IS+I +REI+VRD+ RFHHFKDG+CSC DYW
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/411 (32%), Positives = 223/411 (54%), Gaps = 16/411 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           + R G  + A+  F    L    RPD  TF   L AC  L D   G+ +       G++ 
Sbjct: 84  HSRRGSPASALRVFR--ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DVFV +SLLH+Y R+G    A K+F  MP RD  +W+ M++G+  +G  ++A+ +   MR
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +GV  D + +  ++  C  + N+  G  +H ++++HG+  ++  + +L++MYAK G++ 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A RVF  M+ R+ VSW+++I+ + Q+     A   F  MQ +GIQPD   LVS     +
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +   +  RSVHGFI+RR  F  + I+G A +DMY+K G + SA  +F  +  +D+I WN
Sbjct: 322 NIGFLKLGRSVHGFIVRR--FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I     +G   +A+ +FQ M E   + P+  T+ S+L A SH G + +G     R++ 
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETG-MRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 362 NCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS 407
           +   F +  A     CLVD+  + G +++A  L   +    +V  W A++S
Sbjct: 439 H---FKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 387/709 (54%), Gaps = 66/709 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   SLL +Y + G    AR +F +MP RD  SW  M+ G  + G   EA+ +  +M 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----- 176
            +G+S    T+ ++L  CA ++    G  +H ++VK GL   + V+N+++NMY K     
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 177 --------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                                      G M  AL +F+ M +R +VSWN++IA Y Q+  
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 211 PITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR----------- 258
              A  FF+ M   + + PD  T+ S+ S  A L      + VH +I+R           
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334

Query: 259 ---------------RGWFME------DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                          RG   +      +VI   A+++ Y KLG +  A  +F+ +  +DV
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W  +I GY QNG   EA+E+F++M       PN  T  ++L   + +  L  G +IH 
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGP-EPNSYTVAAVLSVCASLACLEYGKQIHC 453

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           + I++       V+  +V MY + G +  A  +F +V  R  +V W ++I     HG G+
Sbjct: 454 KAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGE 513

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  F +ML  GV+PD ITFV +L+AC+H G V EG+RYF  +Q++ GI P + HY CM
Sbjct: 514 DAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACM 573

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG    A  FIQ MPV PDA  WG+LL ACR+H N +L  +A+++L  +D  N 
Sbjct: 574 VDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNS 633

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y  +SN+Y+  G+W    ++    +D+ +KK  G+S   + N+V +F   +  HP+ +
Sbjct: 634 GAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRD 693

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            +Y     +   +K  G+VPD   VL DV+++ KE +L+ HSE+LAIAFG++S+P K+ +
Sbjct: 694 TVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTL 753

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVC DCH   KFIS++ +REII+RD+ RFHHFKDG CSC DYW
Sbjct: 754 RIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 249/550 (45%), Gaps = 80/550 (14%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
           R GR  EA+  F    +T GL P  +T   VL +C        G+K+H  V+KLG    V
Sbjct: 139 RVGRFGEAIKMFLDM-VTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCV 197

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS--------------------- 102
            VA S+L+MY + G A  AR +F+ MP R   SWNAM+S                     
Sbjct: 198 PVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDR 257

Query: 103 ----------GYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLI 151
                     GY Q+G   +AL     M     ++ D  T+ S+L  CA    +  G  +
Sbjct: 258 TIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV 317

Query: 152 HLYIVKHGLEFNLFVSNNLINMYA---------------------------------KFG 178
           H YI++  + +   V+N LI+MYA                                 K G
Sbjct: 318 HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLG 377

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            M+HA  +FD M  RDVV+W ++I  YEQ+     A   F  M ++G +P+  T+ ++ S
Sbjct: 378 DMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLS 437

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDV 297
           + A L      + +H   + R    +   + N++V MYA+ G +  A  VF+ +   K+ 
Sbjct: 438 VCASLACLEYGKQIHCKAI-RSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKET 496

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W ++I   AQ+GL  +A+ +F+ M     + P++ T+V +L A +HVG + +G +   
Sbjct: 497 VTWTSMIVALAQHGLGEDAVGLFEEMLRVG-VKPDRITFVGVLSACTHVGFVDEGKRYFQ 555

Query: 358 RVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQG 415
           ++  K+ +  ++    C+VD+  + G   +A     Q+P    ++ W +++S   +H   
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNA 615

Query: 416 DKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSE--GQRYFHMMQEEFGIKPHLK 471
           D A     ++L  D G    +    ++ +AC      ++   +R    +++E G      
Sbjct: 616 DLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFS--WT 673

Query: 472 HYGCMVDLFG 481
           H G  V +FG
Sbjct: 674 HIGNRVHVFG 683



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 205/490 (41%), Gaps = 112/490 (22%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY-----AKFGMMRHALRVF 187
           A +L  C  + N  +G  IH   VK GL  + ++ NNL++ Y        G  R A R+F
Sbjct: 27  ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86

Query: 188 DQM--MERDVVSWNSIIAAYEQS---------------NDPIT----------------A 214
           D++   +R+V +WNS+++ Y +S                DP++                A
Sbjct: 87  DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M   G+ P   TL ++ S  A        R VH F+++ G     V + N+V++
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLG-LSSCVPVANSVLN 205

Query: 275 MYAK-------------------------------LGIINSACAVFEGLPVKDVISWNTL 303
           MY K                               LG ++ A ++FE +P + ++SWN +
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GY QNGL ++A+  F  M   + + P++ T  S+L A +++G +  G ++HA ++++ 
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQ------------------------------ 393
           + +   V   L+ MY K G +++A  +  Q                              
Sbjct: 326 MPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385

Query: 394 ---VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
              +     V W A+I  +  +G  D+A+  FR M+  G  P+  T  ++L+ C+    +
Sbjct: 386 FDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACL 445

Query: 451 SEGQ----RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
             G+    +    +QE+     +      +V ++ R+G L  A      +  R +   W 
Sbjct: 446 EYGKQIHCKAIRSLQEQSSSVSN-----SIVTMYARSGSLPWARRVFDRVHWRKETVTWT 500

Query: 507 ALLGACRIHG 516
           +++ A   HG
Sbjct: 501 SMIVALAQHG 510


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/678 (37%), Positives = 388/678 (57%), Gaps = 37/678 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++F   +LL       L +    LF  M  RD+ S+NA+I+G+   G    A+ +   + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 122 LEGVSMDPITV---ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
             G S+ P  +   A ++   A  D  L G   H  I++ G   N FV + L+ MYAK G
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRAL-GRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 179 MMRHALRVFDQ-------------------------------MMERDVVSWNSIIAAYEQ 207
           ++  A RVFD+                               M +RD ++W +++  + Q
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +     A  FF  M+  GI  D  T  S+ +    L+     + +H +I+R   + ++V 
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT-HYDDNVF 308

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G+A+VDMY+K   I  A   F  +  K++ISW  LI GY QNG + EA+ VF  M+  +
Sbjct: 309 VGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQR-D 367

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I+P+  T  S++ + +++ +L +G + H   + + L   + V+  LV +YGKCG I+DA
Sbjct: 368 GIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             LF ++     V W A+++ +   G+  + ++ F +ML + V+PD +TF+ +L+ACS +
Sbjct: 428 HRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           G V +G  YFH MQ++ GI P   HY CM+DL+ R+G L  A  FI+ MP+ PDA  WG 
Sbjct: 488 GFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGT 547

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL ACR+ G+ME+G  A++ L E+D +N   YVL+ +++A  G W  V ++R   RDR +
Sbjct: 548 LLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQV 607

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           KK PG S I+  NKV IF   +++HP  + IY++L  L +KM   GY PD S VL DV +
Sbjct: 608 KKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD 667

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            +K H+++ HSE+LAIAFG++  P + PI+I KNLRVC DCHN TK IS+IT R+I+VRD
Sbjct: 668 TDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRD 727

Query: 688 SNRFHHFKDGICSCGDYW 705
           + RFH F +G+CSCGD+W
Sbjct: 728 AVRFHKFSNGVCSCGDFW 745



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/426 (30%), Positives = 210/426 (49%), Gaps = 40/426 (9%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL--- 78
           S +RP   T   ++ A   L D   G++ HC +L+LGF  + FV + L+ MY + GL   
Sbjct: 134 SSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGD 193

Query: 79  ----------ANV------------------ARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
                      NV                  AR+LF+ M  RD  +W  M++G+ Q+G  
Sbjct: 194 AKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLE 253

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            +AL+    MR +G+++D  T  SIL  C     +  G  IH YI++   + N+FV + L
Sbjct: 254 SQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSAL 313

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY+K   ++ A   F +M  ++++SW ++I  Y Q+     A   F+ MQ+ GI PD 
Sbjct: 314 VDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL S+ S  A L         H   +  G  M  + + NA+V +Y K G I  A  +F+
Sbjct: 374 FTLGSVISSCANLASLEEGAQFHCLALVSG-LMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +   D +SW  L+TGYAQ G A E I++F+ M    ++ P+  T++ +L A S  G + 
Sbjct: 433 EMLFHDQVSWTALVTGYAQFGRAKETIDLFEKM-LAKDVKPDGVTFIGVLSACSRAGFVE 491

Query: 351 QGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           +G      + K+   +  D    TC++D+Y + GR+ +A     Q+P    ++ W  ++S
Sbjct: 492 KGCSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 408 CHGIHG 413
              + G
Sbjct: 551 ACRLRG 556



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 176/366 (48%), Gaps = 17/366 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M++ + + G  S+A++ F +     G+  D YTF  +L AC     L  GK+IH  +++ 
Sbjct: 243 MVTGFTQNGLESQALNFFRRMRF-QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ +VFV ++L+ MY +      A   F  M  ++  SW A+I GY Q+G + EA+ + 
Sbjct: 302 HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+ +G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 362 SEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKC 421

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M+  D VSW +++  Y Q          F  M    ++PD +T + + 
Sbjct: 422 GSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVL 481

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
           S  ++        S    + +    +        ++D+Y++ G +  A    + +P+  D
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPD 541

Query: 297 VISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYS------HVGA 348
            I W TL++     G     +E+ Q   E   EI+P N  +YV +   ++       V  
Sbjct: 542 AIGWGTLLSACRLRG----DMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQ 597

Query: 349 LRQGIK 354
           LR+G++
Sbjct: 598 LRRGMR 603


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/693 (35%), Positives = 405/693 (58%), Gaps = 12/693 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+  L  G RPD +TFP V+K C  L    +G+  H  V+KLG E DV+   SL+  Y +
Sbjct: 95  YRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAK 154

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR--LEGVSMDPITVA 133
            GL   A ++FD MPVRD  +WN M+ GY  +G    AL    EM   LE V  D + + 
Sbjct: 155 LGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALE-VQHDSVGII 213

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           + L  C    + + G  IH Y+++HGLE ++ V  +L++MY K G + +A  VF  M  R
Sbjct: 214 AALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
            VV+WN +I  Y  +  P  A   F  M+  G+Q +++T ++L +  AQ       RSVH
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G+++RR  F+  V++  A+++MY K+G + S+  +F  +  K ++SWN +I  Y    + 
Sbjct: 334 GYVVRR-QFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMY 392

Query: 314 SEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           +EAI +F  +E  N+ + P+  T  +++PA+  +G+LR   +IH+ +I      +  +  
Sbjct: 393 TEAITLF--LELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMN 450

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            ++ MY + G +  +  +F ++     + WN +I  + IHGQG  AL  F +M   G++P
Sbjct: 451 AVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQP 510

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           +  TFVS+LTACS SGLV EG  +F++M +E+G+ P ++HYGCM DL GR G L     F
Sbjct: 511 NESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQF 570

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I++MP+ P + +WG+LL A R   ++++   A++R+F+++ +N G Y+++S++YA+ G+W
Sbjct: 571 IESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRW 630

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           E V+ VR L +++GL++T   S +E+++    F  G+ +H +   I++    L+ K++  
Sbjct: 631 EDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEET 690

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
               ++S+ +          +   HS RLA+ FG+ISS   SPI + KN+R+C  CH+  
Sbjct: 691 DDTRNQSYPVPVATRTTT--MPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHAL 748

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K IS+ + R I+V DS  +H F DG C CGDYW
Sbjct: 749 KLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 202/421 (47%), Gaps = 5/421 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N MI G+  +G    AL     M  +G   D  T   ++  CAR   +  G   H  ++K
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIK 135

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GLE +++  N+L+  YAK G++  A RVFD M  RD+V+WN+++  Y  +     A   
Sbjct: 136 LGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALAC 195

Query: 218 FTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           F  M  A  +Q D + +++  +           + +HG+++R G   +D+ +G +++DMY
Sbjct: 196 FQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHG-LEQDIKVGTSLLDMY 254

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G +  A +VF  +P++ V++WN +I GYA N    EA + F  M     +     T 
Sbjct: 255 CKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQM-RAEGLQVEVVTA 313

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           +++L A +   +   G  +H  V++      V + T L++MYGK G+++ +  +F ++  
Sbjct: 314 INLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIAN 373

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            + V WN +I+ +       +A+  F ++L++ + PD+ T  +++ A    G +    R 
Sbjct: 374 KTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC-RQ 432

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H      G   +      ++ ++ R+G +  +      M V  D   W  ++    IHG
Sbjct: 433 IHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM-VSKDVISWNTMIMGYAIHG 491

Query: 517 N 517
            
Sbjct: 492 Q 492



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 171/321 (53%), Gaps = 4/321 (1%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           S +L+   A  G M  A+     +   D    N +I  +  +  P  A   +  M + G 
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD  T   +    A+L      R+ HG +++ G    DV   N++V  YAKLG++  A 
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLG-LEHDVYTCNSLVAFYAKLGLVEDAE 162

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+G+PV+D+++WNT++ GY  NGL S A+  FQ M +  E+  +    ++ L A    
Sbjct: 163 RVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +  QG +IH  VI++ L  D+ V T L+DMY KCG +  A S+F  +P  + V WN +I
Sbjct: 223 VSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMI 282

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFG 465
             + ++ + D+A + F QM  EG++ + +T ++LL AC+ +     G+  + ++++ +F 
Sbjct: 283 GGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQF- 341

Query: 466 IKPHLKHYGCMVDLFGRAGHL 486
             PH+     +++++G+ G +
Sbjct: 342 -LPHVVLETALLEMYGKVGKV 361



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 6/191 (3%)

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GR+D+A+     V    +   N +I      G    AL  +R ML++G RPD  TF  ++
Sbjct: 55  GRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVV 114

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             C+  G + EG R  H M  + G++  +     +V  + + G +  A      MPVR D
Sbjct: 115 KCCARLGGLDEG-RAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVR-D 172

Query: 502 ASIWGALLGACRIHGNMELGAVASDRL---FEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
              W  ++     +G   L       +    EV  ++VG    ++     V   +G  E+
Sbjct: 173 IVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQG-KEI 231

Query: 559 RSLARDRGLKK 569
                  GL++
Sbjct: 232 HGYVIRHGLEQ 242


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/729 (35%), Positives = 407/729 (55%), Gaps = 33/729 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-----RNLVDGKKIHCSVL 55
           MIS ++R G   EA+  F          P+  TF  VL +C      +L D + IH  ++
Sbjct: 216 MISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIV 275

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLF----DDMPVRDSGSWNAMISGYCQSGNAV 111
             G E + FV  +L+  Y + G  + A ++F    D+ P     + +AMIS   Q+G   
Sbjct: 276 GAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQ 335

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN-- 169
           E+L +   M LEG     +T+ S+L  C    ++L       ++++  +E      +N  
Sbjct: 336 ESLRLFFAMNLEGTKPSGVTLVSVLNAC----SMLQVGSATAFVLEQAMEVVSATRDNVL 391

Query: 170 ---LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
              L+  YA+   +  A   FD +   DVVSWN++ AAY Q +    A   F  M   G+
Sbjct: 392 GTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGV 451

Query: 227 QPDLLTLVS-LTSIVAQLNDCRNS--RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +P + T ++ LT+  A      ++  + +   +   G    D  + NA ++MYAK G + 
Sbjct: 452 RPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG-LEGDTAVANATLNMYAKCGSLA 510

Query: 284 SACAVFEGL-PVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
            A AVFE + P + D I+WN+++  Y  +GL  EA E+FQ ME    + PN+ T+V++L 
Sbjct: 511 DARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 570

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-- 399
           A +   ++ QG +IHARV+ N    D  +   L++MY KCG +DDA ++F    +SSS  
Sbjct: 571 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIF---DKSSSNQ 627

Query: 400 ---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              + W ++I+ +  +GQ ++AL  F  M  +GVRP+H+TF+S LTAC+H G + +G   
Sbjct: 628 EDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCEL 687

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              M  + GI P  KH+ C+VDL GR G L  A   ++    + D   W ALL AC+   
Sbjct: 688 LSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSK 746

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            +E G   ++R+ ++D E    Y++++++YA  G+W     +R    D+G++  PG S++
Sbjct: 747 ELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAV 806

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EVN ++  F  G+++HPK E+IY EL  L   +K+ GYV D   VL DV ++ KE +L  
Sbjct: 807 EVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMR 866

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LAIAFG++S+P  SP+++ KNLRVC DCH  TK IS++T R+I++RDS+R+HHF  
Sbjct: 867 HSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTS 926

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 927 GTCSCGDYW 935



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/550 (27%), Positives = 266/550 (48%), Gaps = 48/550 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  ++  GR  +A++ F +  +    RP+ +    ++ AC    NL  G++IH  +   
Sbjct: 115 MIRAWMEHGRPDKAMELFDRMEV----RPNCHALIALVNACSCLGNLAAGRRIHSQISDR 170

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEAL 114
            FE +  +  +L+ MY + G    A++ FD +P    RD  +WNAMIS + ++G+A EAL
Sbjct: 171 DFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREAL 230

Query: 115 DILDEMRLEGV-SMDPITVASILPVCARSDNILSGLL-------IHLYIVKHGLEFNLFV 166
            +  +M  +G    + +T  S+L  C     + +GLL       IH  IV  G+E   FV
Sbjct: 231 QLFRDMDRDGAPPPNSVTFVSVLDSC-----VEAGLLSLEDVRAIHGRIVGAGIEREAFV 285

Query: 167 SNNLINMYAKFGMMRHALRVF----DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
              L++ Y K G +  A  VF    D+     +V+ +++I+A  Q+  P  +   F  M 
Sbjct: 286 RTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMN 345

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSR--SVHGFIMRRGW----FMEDVIIGNAVVDMY 276
             G +P  +TLVS+      LN C   +  S   F++ +         D ++G  ++  Y
Sbjct: 346 LEGTKPSGVTLVSV------LNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTY 399

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           A+   +  A A F+ +   DV+SWN +   Y Q+  + EA+ +F+ M     + P+  T+
Sbjct: 400 ARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERM-LLEGVRPSVATF 458

Query: 337 VSIL---PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
           ++ L    AY    A   G +I + + +  L  D  VA   ++MY KCG + DA ++F +
Sbjct: 459 ITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFER 518

Query: 394 V--PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLV 450
           +   R   + WN++++ +G HG G +A   F+ M  E  V+P+ +TFV++L A +    +
Sbjct: 519 ISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSI 578

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN-FIQNMPVRPDASIWGALL 509
           ++G R  H      G +        +++++ + G L  A   F ++   + D   W +L+
Sbjct: 579 AQG-REIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLI 637

Query: 510 GACRIHGNME 519
                +G  E
Sbjct: 638 AGYAQYGQAE 647



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 241/509 (47%), Gaps = 38/509 (7%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVL--KLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           T+  +L+AC   R L  G+++H  +L  ++      F+A+ L+ M+ + G    A  L D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
                   S  AMI  + + G   +A+++ D M    V  +   + +++  C+   N+ +
Sbjct: 105 RFA--SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAA 159

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM---MERDVVSWNSIIAA 204
           G  IH  I     E N  + N LI+MY+K G +  A + FD++    +RDVV+WN++I+A
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 205 YEQSNDPITAHGFFTTMQQAGI-QPDLLTLVSL--TSIVAQLNDCRNSRSVHGFIMRRGW 261
           + ++     A   F  M + G   P+ +T VS+  + + A L    + R++HG I+  G 
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAG- 278

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVF----EGLPVKDVISWNTLITGYAQNGLASEAI 317
              +  +  A+VD Y KLG ++ A  VF    +  P   +++ + +I+   QNG   E++
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYS--HVGA-----LRQGIKIHARVIKNCLCFDVFV 370
            +F  M       P+  T VS+L A S   VG+     L Q +++ +    N L      
Sbjct: 339 RLFFAM-NLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVL------ 391

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L+  Y +   +  A + F  +     V WNA+ + +  H +  +AL  F +ML EGV
Sbjct: 392 GTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGV 451

Query: 431 RPDHITFVSLLTACSH--SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           RP   TF++ LTAC+       S   +    + EE G++         ++++ + G L  
Sbjct: 452 RPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLAD 511

Query: 489 AHNFIQNM-PVRPDASIWGALLGACRIHG 516
           A    + + P R D   W ++L A   HG
Sbjct: 512 ARAVFERISPARRDCITWNSMLAAYGHHG 540



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 173/328 (52%), Gaps = 17/328 (5%)

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFGMMRHALRV 186
           P T   +L  C R   +  G  +H +I+   ++ +   F++++LI M+AK G +  A  +
Sbjct: 43  PSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEAL 102

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
            D+     V S  ++I A+ +   P  A   F  M+   ++P+   L++L +  + L + 
Sbjct: 103 ADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNL 157

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTL 303
              R +H  I  R  F E+ ++GNA++ MY+K G +  A   F+ LP    +DV++WN +
Sbjct: 158 AAGRRIHSQISDRD-FEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAM 216

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG--ALRQGIKIHARVIK 361
           I+ + +NG A EA+++F+ M+      PN  T+VS+L +    G  +L     IH R++ 
Sbjct: 217 ISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVG 276

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFY----QVPRSSSVPWNAIISCHGIHGQGDK 417
             +  + FV T LVD YGK G +DDA  +F     + P +S V  +A+IS    +G   +
Sbjct: 277 AGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQE 336

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +L  F  M  EG +P  +T VS+L ACS
Sbjct: 337 SLRLFFAMNLEGTKPSGVTLVSVLNACS 364


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/642 (39%), Positives = 377/642 (58%), Gaps = 35/642 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN M  G+  + ++V AL +   M   G+  +  +   +L  CA+S  ++ G  IH +++
Sbjct: 33  WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVL 92

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER----------------------- 193
           K G + +++V+ +LI+MYA+ G +  A +VFD+   R                       
Sbjct: 93  KLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARK 152

Query: 194 --------DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                   DVVSWN++I+ Y ++ +   A   +  M +  ++PD  T+V++ S  AQ   
Sbjct: 153 LFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGS 212

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R +H +I   G F  ++ I N ++D+Y+K G + +AC +F+GL  KDVISWNTLI 
Sbjct: 213 IELGRQLHSWIEDHG-FGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIG 271

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-- 363
           G+    L  EA+ +FQ M    E +PN  T +S+LPA +H+GA+  G  IH  + K    
Sbjct: 272 GHTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKG 330

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +     + T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ + A + F 
Sbjct: 331 VTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFS 390

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M   G+ PD ITFV LL+ACSHSG++  G+  F  M +++ I P L+HYGCM+DL G  
Sbjct: 391 KMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHC 450

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G    A   I+ MP+ PD  IW +LL AC++H N+ELG   +  L +++ EN G YVL+S
Sbjct: 451 GLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLS 510

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA  G+W+ V ++R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY  L 
Sbjct: 511 NIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLE 570

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +   M+  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I KNLR
Sbjct: 571 EMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 630

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           VC +CH  TK IS+I +REII RD  R H  KDG+ SC DYW
Sbjct: 631 VCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 227/437 (51%), Gaps = 48/437 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ Y+FP +LK+C   + L++G++IH  VLKLG++ D++V  SL+ MY 
Sbjct: 52  LYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYA 111

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G  N ARKLFD++ V+D  SWNAMISG
Sbjct: 112 QNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISG 171

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++ N  EAL++  +M    V  D  T+ +++  CA+S +I  G  +H +I  HG   N
Sbjct: 172 YVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSN 231

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           + + N LI++Y+K G +  A  +F  + ++DV+SWN++I  +   N    A   F  M +
Sbjct: 232 IKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLR 291

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    A L      R +H +I +R   + +   +  +++DMYAK G I
Sbjct: 292 SGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI 351

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF+ +  + + SWN +I G+A +G A+ A ++F  M + N I+P+  T+V +L A
Sbjct: 352 EAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRK-NGIDPDDITFVGLLSA 410

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP- 395
            SH G L  G     R I   +  D  +        C++D+ G CG   +A  +   +P 
Sbjct: 411 CSHSGMLDLG-----RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPM 465

Query: 396 RSSSVPWNAIISCHGIH 412
               V W +++    +H
Sbjct: 466 EPDGVIWCSLLKACKMH 482



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 195/401 (48%), Gaps = 37/401 (9%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A+ +F+ + E +++ WN++   +  ++D +TA   +  M   G+ P+  +   L
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGW------------------FMED------------V 266
               A+       + +HG +++ G+                   +ED            V
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A++  YA  G IN+A  +F+ + VKDV+SWN +I+GY +     EA+E+++ M + 
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N + P++ T V+++ A +  G++  G ++H+ +  +    ++ +   L+D+Y KCG ++ 
Sbjct: 192 N-VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  + +   + WN +I  H       +AL  F++ML  G  P+ +T +S+L AC+H
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 447 SGLVSEGQRYFHMM--QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
            G +  G R+ H+   +   G+         ++D++ + G +  A     +M  R  +S 
Sbjct: 311 LGAIDIG-RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS- 368

Query: 505 WGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMS 543
           W A++    +HG  N      +  R   +D +++ +  L+S
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 409



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 165/361 (45%), Gaps = 9/361 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS YV      EA++  Y+  + + ++PD  T   V+ AC    ++  G+++H  +   
Sbjct: 168 MISGYVETCNFKEALE-LYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDH 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +   L+ +Y + G    A  LF  +  +D  SWN +I G+       EAL + 
Sbjct: 227 GFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLF 286

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
            EM   G S + +T+ S+LP CA    I  G  IH+YI K   G+     +  +LI+MYA
Sbjct: 287 QEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYA 346

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VFD M+ R + SWN++I  +        A   F+ M++ GI PD +T V 
Sbjct: 347 KCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVG 406

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S  +        R +   + +       +     ++D+    G+   A  +   +P++
Sbjct: 407 LLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPME 466

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            D + W +L+     +          Q + +    NP  G+YV +   Y+  G   Q  K
Sbjct: 467 PDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENP--GSYVLLSNIYATAGRWDQVAK 524

Query: 355 I 355
           I
Sbjct: 525 I 525


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 366/579 (63%), Gaps = 5/579 (0%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           MDP    S L  C    NI     +H  +   G+  +L V+N L+ M AK   +  A  +
Sbjct: 1   MDPDFFISTLFKCR---NIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLL 57

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F++M ERD VSW+ +I  + ++ D       F  + +AG +PD  +L  +          
Sbjct: 58  FNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGL 117

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              R +H  +++ G  +++ +  + +VDMYAK G+I++A  +F+ +P KD+++   +I G
Sbjct: 118 IMGRLIHSTVLKNGLHLDNFVC-STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAG 176

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YA+ G  +E+  +F  M   +   P++   V+I+ A + +GA+ +   +H  V       
Sbjct: 177 YAECGKPNESWVLFDQMRR-DGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL 235

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV + T ++DMY KCG ID +  +F ++ + + + W+A+I  +G HGQG +AL  F  ML
Sbjct: 236 DVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMML 295

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           + G+ P+ ITF+SLL ACSH+GLV +G + F +M   +G++P +KHY CMVDL GRAG L
Sbjct: 296 NSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRL 355

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A   I+NM V  D  IW A LGACRIH  ++L   A+  L  + ++N G+Y+L+SNIY
Sbjct: 356 DQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIY 415

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           AN G+W+ V ++R+L   R LKK PG++ IEV+N +  F  G+ +H +  +IY+ L++L+
Sbjct: 416 ANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLS 475

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            K++S GYVPD + VL DV+E+ K  IL +HSE+LAIAFG+I++P  +PI+I KNLRVCG
Sbjct: 476 QKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCG 535

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH++ K +S IT+R+IIVRD+NRFHHFK+GICSCGDYW
Sbjct: 536 DCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 229/421 (54%), Gaps = 9/421 (2%)

Query: 27  LRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           + PDF  F   L  CRN+   K++H  V   G   D+ VA  LL+M  +      A  LF
Sbjct: 1   MDPDF--FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLF 58

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           + M  RD  SW+ MI G+ ++G+         E+   G   D  ++  ++  C  +  ++
Sbjct: 59  NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G LIH  ++K+GL  + FV + L++MYAK GM+ +A ++FD+M ++D+V+   +IA Y 
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +   P  +   F  M++ G  PD + +V++ +  A+L     +R VH ++  R + + DV
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL-DV 237

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +G A++DMYAK G I+S+  +F+ +  K+VISW+ +I  Y  +G   EA+E+F MM   
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLN- 296

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRID 385
           + I PN+ T++S+L A SH G +  G+++ + + +   +  DV   TC+VD+ G+ GR+D
Sbjct: 297 SGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLD 356

Query: 386 DAMSLF--YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLT 442
            A+ L    +V +   + W A +    IH Q D A    + +L  +   P H   +S + 
Sbjct: 357 QALRLIENMEVEKDEGI-WCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIY 415

Query: 443 A 443
           A
Sbjct: 416 A 416



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 182/371 (49%), Gaps = 13/371 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  +V+ G        F +  + +G +PD ++ P V+KACR+   L+ G+ IH +VLK 
Sbjct: 72  MIGGFVKNGDYERCFQTFREL-IRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKN 130

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D FV ++L+ MY + G+ + A++LFD MP +D  +   MI+GY + G   E+  + 
Sbjct: 131 GLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLF 190

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D+MR +G   D + + +I+  CA+   +    L+H Y+       ++ +   +I+MYAK 
Sbjct: 191 DQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKC 250

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  +FD+M +++V+SW+++I AY        A   F  M  +GI P+ +T +SL 
Sbjct: 251 GSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLL 310

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
              +      +   +   +        DV     +VD+  + G ++ A  + E + V KD
Sbjct: 311 YACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKD 370

Query: 297 VISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
              W   +     + Q  LA +A ++   ++       N G Y+ +   Y++ G  +   
Sbjct: 371 EGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ-----TQNPGHYILLSNIYANAGRWKDVA 425

Query: 354 KIHARVIKNCL 364
           KI   + K  L
Sbjct: 426 KIRNLMAKRRL 436


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/709 (35%), Positives = 389/709 (54%), Gaps = 66/709 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   SLL M+ + G    AR +F +MP RD+ SW  M+ G  ++G   EA+  L +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----- 176
            +G +    T+ ++L  CA +     G  +H ++VK GL   + V+N+++NMY K     
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 177 --------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                                      G M  A  +F+ M +R +VSWN++IA Y Q+  
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 211 PITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR---------- 259
              A   F+ M  ++ + PD  T+ S+ S  A L + R  + VH +I+R           
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 260 -------------------GWFME---DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                                 ME   +VI   A+++ Y K+G + SA  +F  +  +DV
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W  +I GY QNG   EAI++F+ M  C    PN  T  ++L   + +  L  G +IH 
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           R I++ L     V+  ++ MY + G    A  +F QV  R  ++ W ++I     HGQG+
Sbjct: 456 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +ML  GV PD IT+V +L+ACSH+G V+EG+RY+  ++ E  I P + HY CM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG    A  FI+ MPV PDA  WG+LL ACR+H N EL  +A+++L  +D  N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y  ++N+Y+  G+W     +    +++ ++K  G+S   + +K+ +F   +  HP+ +
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            +Y     +  ++K  G+VPD   VL DV+++ KE +L+ HSE+LAIAFG+IS+P K+ +
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCH   K IS++T+REIIVRD+ RFHHF+DG+CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 204/488 (41%), Gaps = 103/488 (21%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF----GMMRHALRVFD 188
           A +L +C  + N  +G  IH   VK GL  + ++ NNL++ Y +     G +R A R+FD
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 189 Q--MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA---------------------- 224
           +  +  R+V +WNS+++ + +S     A G F  M +                       
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 225 ---------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
                    G  P   TL ++ S  A        R VH F+++ G     V + N+V++M
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNM 208

Query: 276 YAKLGIINSACAVFEGLPVKDV-------------------------------ISWNTLI 304
           Y K G   +A  VFE +PV+ V                               +SWN +I
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GY QNGL ++A+++F  M   + + P++ T  S+L A +++G +R G ++HA +++  +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--------------------------- 397
            ++  V   L+  Y K G +++A  +  Q   +                           
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 398 ------SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
                   V W A+I  +  +G+ D+A++ FR M+  G  P+  T  ++L+ C+    + 
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G++  H       ++        ++ ++ R+G    A      +  R +   W +++ A
Sbjct: 449 YGKQ-IHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 512 CRIHGNME 519
              HG  E
Sbjct: 508 LAQHGQGE 515



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 177/394 (44%), Gaps = 42/394 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y + G  ++A+  F +    S + PD +T   VL AC NL +   GK++H  +L+ 
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD----------------------------- 88
              ++  V  +L+  Y + G    AR++ D                              
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 89  ----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
               M  RD  +W AMI GY Q+G   EA+D+   M   G   +  T+A++L VCA    
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIA 203
           +  G  IH   ++  LE +  VSN +I MYA+ G    A R+FDQ+  R + ++W S+I 
Sbjct: 447 LDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A G F  M +AG++PD +T V + S  +        +  +  I       
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 566

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM 322
            ++     +VD+ A+ G+ + A      +PV+ D I+W +L++    +  A E  E+   
Sbjct: 567 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA-ELAEL--A 623

Query: 323 MEECNEINP-NQGTYVSILPAYSHVGALRQGIKI 355
            E+   I+P N G Y +I   YS  G      +I
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARI 657



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 171/385 (44%), Gaps = 81/385 (21%)

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----GIINSACAVFEGLPV--KDVISWNTL 303
           R++H   ++ G  +    + N ++  Y +     G +  A  +F+ +P+  ++V +WN+L
Sbjct: 46  RAIHARAVKAG-LLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEIN------------------------------PNQ 333
           ++ +A++G  ++A  VF  M E + ++                              P Q
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC------------ 381
            T  ++L + +   A   G K+H+ V+K  L   V VA  +++MYGKC            
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 224

Query: 382 -------------------GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
                              GR+D A SLF  +P  S V WNA+I+ +  +G   KAL  F
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 423 RQMLDE-GVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            +ML E  + PD  T  S+L+AC++ G V  G Q + ++++ E      + +   ++  +
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTY 342

Query: 481 GRAGHLGMAHNFI-QNMPVRPDASIWGALLGACRIHGNMELGAVASDR-LFEV--DSENV 536
            ++G +  A   + Q+M    +   + ALL      G +++G + S R +F V  + + V
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALL-----EGYVKIGDMESAREMFGVMNNRDVV 397

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSL 561
            +  ++     N    E +D  RS+
Sbjct: 398 AWTAMIVGYEQNGRNDEAIDLFRSM 422


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/657 (38%), Positives = 377/657 (57%), Gaps = 35/657 (5%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A  +F+ +   +   WN MI G+  S + V +L +   M   G+  +  T   +L  CA+
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY--------------------------- 174
           S     G  IH  ++K G + +L+V  +LI+MY                           
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 175 ----AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
               A  G +R A ++FD++  +DVVSWN++I+ Y ++     A   F  M +  ++PD 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T V++ S  A        R VH ++   G F  ++ I NA++D+Y+K G + +AC +F+
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHG-FDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           GL  KDVISWNTLI GY    L  EA+ +FQ M    E  PN  T +S+LPA +H+GA+ 
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSVLPACAHLGAID 314

Query: 351 QGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
            G  IH  + K    +     + T L+DMY KCG I+ A  +F  +   S   WNA+I  
Sbjct: 315 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
             +HG+ D + + F +M   G+ PD ITFV LL+ACSHSG++  G+  F  M +++ + P
Sbjct: 375 FAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP 434

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            L+HYGCM+DL G +G    A   I  M + PD  IW +LL AC++HGN+EL    +  L
Sbjct: 435 KLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNL 494

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
            +++ EN   Y+L+SNIYA+ G+WE V  +R+L   + +KK PG SSIEV++ V  F  G
Sbjct: 495 IKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVG 554

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           ++ HP+  +IY  L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+I
Sbjct: 555 DKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLI 614

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+ P + + I KNLRVC +CH  TK +S+I +REI+ RD  RFHHF+DG+CSC DYW
Sbjct: 615 STKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 235/462 (50%), Gaps = 40/462 (8%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP +LK+C   +   +G++IH  VLKLGF+ D++V  SL+ MY 
Sbjct: 51  LYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYV 110

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G    A+KLFD++PV+D  SWNAMISG
Sbjct: 111 QNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISG 170

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++G   EAL++ +EM    V  D  T  ++L  CA S +I  G  +H ++  HG + N
Sbjct: 171 YAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSN 230

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  +F  +  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 231 LKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 290

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    A L      R +H +I +R   + +   +  +++DMYAK G I
Sbjct: 291 SGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 350

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF  +  K + SWN +I G+A +G A  + ++F  M +   I P+  T+V +L A
Sbjct: 351 EAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IEPDDITFVGLLSA 409

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            SH G L  G  I   + ++  +   +    C++D+ G  G   +A  +   +      V
Sbjct: 410 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 469

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            W +++    +HG  + A +F + ++   + P++ +   LL+
Sbjct: 470 IWCSLLKACKMHGNVELAESFAQNLIK--IEPENPSSYILLS 509



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 188/375 (50%), Gaps = 35/375 (9%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A  VF+ + E + + WN++I  +  S+DP+++   +  M   G+ P+  T   L
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRG------------------WFME------------DV 266
               A+       + +HG +++ G                  W +E            DV
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A++  YA  G I SA  +F+ +PVKDV+SWN +I+GYA+ G   EA+E+F+ M + 
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N + P++ TYV++L A +H G++  G ++H+ V  +    ++ +   L+D+Y KCG ++ 
Sbjct: 191 N-VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  +     + WN +I  +       +AL  F++ML  G  P+ +T +S+L AC+H
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309

Query: 447 SGLVSEGQRYFHMMQEEF--GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
            G +  G R+ H+  ++   G+         ++D++ + G +  AH    +M +    S 
Sbjct: 310 LGAIDIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSS 367

Query: 505 WGALLGACRIHGNME 519
           W A++    +HG  +
Sbjct: 368 WNAMIFGFAMHGRAD 382


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/660 (38%), Positives = 368/660 (55%), Gaps = 40/660 (6%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           + +H  ++      +  +   L+  Y        ARK+FD++P R+    N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
           G   E + +   M    V  D  T   +L  C+ S  I+ G  IH    K GL   LFV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++MY K G +  A  V D+M  RDVVSWNS++  Y Q+     A      M+   I 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D  T+ SL   V+                      E+V+    V DM+ K+G       
Sbjct: 239 HDAGTMASLLPAVSNTT------------------TENVMY---VKDMFFKMG------- 270

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
                  K ++SWN +I  Y +N +  EA+E++  ME  +   P+  +  S+LPA     
Sbjct: 271 ------KKSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTS 323

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G KIH  + +  L  ++ +   L+DMY KCG ++ A  +F  +     V W A+IS
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G  G+G  A+  F ++ D G+ PD I FV+ L ACSH+GL+ EG+  F +M + + I 
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P L+H  CMVDL GRAG +  A+ FIQ+M + P+  +WGALLGACR+H + ++G +A+D+
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADK 503

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           LF++  E  GYYVL+SNIYA  G+WE V  +R++ + +GLKK PG S++EVN  +  F  
Sbjct: 504 LFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLV 563

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+R+HP+ ++IY EL  L  KMK LGYVPD    L DVEE++KE  L  HSE+LAI F +
Sbjct: 564 GDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFAL 623

Query: 648 ISSPPK-----SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +++  +     + I+I KNLR+CGDCH   K ISQIT REII+RD+NRFH F+ G+CSC 
Sbjct: 624 MNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 210/432 (48%), Gaps = 57/432 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  YV  G   E V  F        +RPD YTFP VLKAC     +V G+KIH S  K+
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMC-GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    +FV   L+ MY + G  + AR + D+M  RD  SWN+++ GY Q+    +AL++ 
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    +S D  T+AS+LP  + +                        + N+  MY K 
Sbjct: 230 REMESVKISHDAGTMASLLPAVSNT-----------------------TTENV--MYVK- 263

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                   +F +M ++ +VSWN +I  Y ++  P+ A   ++ M+  G +PD +++ S+ 
Sbjct: 264 -------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                 +     + +HG+I R+   + ++++ NA++DMYAK G +  A  VFE +  +DV
Sbjct: 317 PACGDTSALSLGKKIHGYIERKK-LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  +I+ Y  +G   +A+ +F  +++   + P+   +V+ L A SH G L +G     
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEG----- 429

Query: 358 RVIKNC--LCFDVFVAT-------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
              ++C  L  D +  T       C+VD+ G+ G++ +A      +    +   W A++ 
Sbjct: 430 ---RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLG 486

Query: 408 CHGIHGQGDKAL 419
              +H   D  L
Sbjct: 487 ACRVHSDTDIGL 498


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/673 (35%), Positives = 385/673 (57%), Gaps = 1/673 (0%)

Query: 33  TFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           T   + +  + L    +++  +L       +     +   Y + G  +VA K F+ +   
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE 76

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +  SWN +++ + ++    + L +   M  EG  +D   +   +  C          L H
Sbjct: 77  NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 136

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K  LE + +V+  L+N+Y + G +  A +VF+++  ++ V W  +I  +   ++  
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEF 196

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                F+ M+++G + D   +  L      +   +  ++ HG  +++ +   +  +  ++
Sbjct: 197 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSL 256

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           VDMY K G ++ A  +FE +  +DV+ W+ +I G+A+NG A E+I +F+ M   + + PN
Sbjct: 257 VDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQML-ADSVTPN 315

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T+ SI+ A S +G+L+QG  +H  +I+N +  DV   T  +DMY KCG I  A  +F 
Sbjct: 316 SVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFC 375

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           Q+P  +   W+ +I+  G+HG   +ALN F +M      P+ +TFVS+L+ACSHSG + E
Sbjct: 376 QIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEE 435

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G  +F  M  ++GI P  +HY CMVDL GRAG +  A +FI NMP  P AS WGALLGAC
Sbjct: 436 GWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGAC 495

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
           RIH   EL    + +L  ++S+  G YV++SNIYA+VG WE V + R    ++G+ K  G
Sbjct: 496 RIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVG 555

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEH 632
           ++SIE+  K+ +F + +R   K  +I     +L  +M+ LGYVPD  FVL DV+++ K+ 
Sbjct: 556 FTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQE 615

Query: 633 ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFH 692
           +L  HSE+LAI FG+++S    PI+I KN+RVCGDCH  +KFIS IT R+II+RD  RFH
Sbjct: 616 VLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFH 675

Query: 693 HFKDGICSCGDYW 705
           H +DG+CSCGDYW
Sbjct: 676 HVQDGVCSCGDYW 688


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 390/709 (55%), Gaps = 66/709 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           + F   SLL +Y + G    A  +F +MP RD+ SW  MI G  +SG   +A+    +M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG--- 178
            EG +    T+ ++L  CA  +    G  +H ++VK GL   + V+N+++ MY K G   
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 179 ----------------------------MMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                                        M  A+ +F+ M+ER +VSWN+IIA Y Q+  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 211 PITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-------- 261
              A  FF+ M  A  ++PD  T+ S+ S  A L   +  + +H +I+R G         
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 262 -----------------FMEDVIIGN-------AVVDMYAKLGIINSACAVFEGLPVKDV 297
                             M+  ++ +       A+++ Y KLG    A  +F+ +  +DV
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  +I GY QNG   EA+E+F+ M       PN  T  ++L A + +  L  G +IH 
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGP-EPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           + I++     V V+  ++ +Y + G +  A  +F Q+  R  ++ W ++I     HG G+
Sbjct: 639 KAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +M+  GV+PDHIT+V +L+AC+H+G V +G+RY+  MQ E GI P + HY CM
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG L  AH FIQ MPV PD  +WG+LL ACR+  N +L  +A+ +L  +D  N 
Sbjct: 759 VDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS 818

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y  ++N+Y+  G+W     +  L +D+G+KK  G+S   V  KV +F   +  HP+ +
Sbjct: 819 GAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRD 878

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            IY +   +  ++K  G+VPD + VL DV+++ KE +L+ HSE+LAIAFG+IS+P K+ +
Sbjct: 879 SIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 938

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVC DCH   KFIS+  +REIIVRD+ RFHHF+DG CSC DYW
Sbjct: 939 RIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/504 (23%), Positives = 199/504 (39%), Gaps = 111/504 (22%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------- 185
           A +L +C  + N  +G  IH + VK GL  + ++ NNL+  YA  G+ R   R       
Sbjct: 213 ARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFD 272

Query: 186 ------------------------------VFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
                                         VF +M +RD VSW  +I    +S     A 
Sbjct: 273 DIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAV 332

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M   G  P   TL ++ S  A +  C   R VH F+++ G     V + N+V+ M
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLG-LSSCVPVANSVLYM 391

Query: 276 YAKLGIINSACAVFEGLPVKDV-------------------------------ISWNTLI 304
           Y K G   +A AVFE + V+ V                               +SWNT+I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GY QNGL   A++ F  M   + + P+  T  S+L A +++  L+ G ++H+ +++  +
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGM 511

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQ------------------------------- 393
                +   L+  Y K G ++ A  +  Q                               
Sbjct: 512 PCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIF 571

Query: 394 --VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +     + W A+I  +  +GQ D+A+  FR M+  G  P+  T  ++L+AC+    + 
Sbjct: 572 DIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLD 631

Query: 452 EGQ----RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            G+    +    +QE+      +     ++ ++ R+G + +A      +  R +   W +
Sbjct: 632 YGKQIHCKAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTS 686

Query: 508 LLGACRIHGNMELGAVASDRLFEV 531
           ++ A   HG  E   V  + +  V
Sbjct: 687 MIVAMAQHGLGEQAVVLFEEMVRV 710


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 387/678 (57%), Gaps = 14/678 (2%)

Query: 29   PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
            PD  T   VL  C   R +  GK +H   +KL  + ++ +  +L+ MY + G    A+ +
Sbjct: 645  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 704

Query: 86   FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSD 143
            F     ++  SWN M+ G+   G+     D+L +M    E V  D +T+ + +PVC    
Sbjct: 705  FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 764

Query: 144  NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
             + S   +H Y +K    +N  V+N  +  YAK G + +A RVF  +  + V SWN++I 
Sbjct: 765  FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 824

Query: 204  AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
             + QSNDP  +      M+ +G+ PD  T+ SL S  ++L   R  + VHGFI+R  W  
Sbjct: 825  GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR-NWLE 883

Query: 264  EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
             D+ +  +V+ +Y   G + +  A+F+ +  K ++SWNT+ITGY QNG    A+ VF+ M
Sbjct: 884  RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 943

Query: 324  EECNEINPNQGTYVSILPAY---SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
                 +   Q   +S++P +   S + +LR G + HA  +K+ L  D F+A  L+DMY K
Sbjct: 944  V----LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 999

Query: 381  CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
             G I  +  +F  +   S+  WNA+I  +GIHG   +A+  F +M   G  PD +TF+ +
Sbjct: 1000 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 1059

Query: 441  LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI-QNMPVR 499
            LTAC+HSGL+ EG RY   M+  FG+KP+LKHY C++D+ GRAG L  A   + + M   
Sbjct: 1060 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 1119

Query: 500  PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
             D  IW +LL +CRIH N+E+G   + +LFE++ E    YVL+SN+YA +GKWE V +VR
Sbjct: 1120 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 1179

Query: 560  SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
                +  L+K  G S IE+N KV  F  G R    +E+I      L  K+  +GY PD  
Sbjct: 1180 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 1239

Query: 620  FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
             V  D+ E+EK   L  HSE+LA+ +G+I +   + I+++KNLR+C DCHN  K IS++ 
Sbjct: 1240 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 1299

Query: 680  EREIIVRDSNRFHHFKDG 697
            EREI+VRD+ RFHHFK+G
Sbjct: 1300 EREIVVRDNKRFHHFKNG 1317



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 277/533 (51%), Gaps = 29/533 (5%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
            +IS Y R     E ++ F +   T+ L PD +T+P V+KAC  + D   G  +H  V+K 
Sbjct: 512  VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 571

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G   DVFV  +L+  Y   G    A +LFD MP R+  SWN+MI  +  +G + E+  +L
Sbjct: 572  GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 631

Query: 118  DEMRLE---GVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
             EM  E   G  M D  T+ ++LPVCAR   I  G  +H + VK  L+  L ++N L++M
Sbjct: 632  GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 691

Query: 174  YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--AG---IQP 228
            Y+K G + +A  +F     ++VVSWN+++  +    D    HG F  ++Q  AG   ++ 
Sbjct: 692  YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD---THGTFDVLRQMLAGGEDVKA 748

Query: 229  DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
            D +T+++   +    +   + + +H + +++  F+ + ++ NA V  YAK G ++ A  V
Sbjct: 749  DEVTILNAVPVCFHESFLPSLKELHCYSLKQE-FVYNELVANAFVASYAKCGSLSYAQRV 807

Query: 289  FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
            F G+  K V SWN LI G+AQ+     +++    M + + + P+  T  S+L A S + +
Sbjct: 808  FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKS 866

Query: 349  LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
            LR G ++H  +I+N L  D+FV   ++ +Y  CG +    +LF  +   S V WN +I+ 
Sbjct: 867  LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITG 926

Query: 409  HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-----HSGLVSEGQRYFHMMQEE 463
            +  +G  D+AL  FRQM+  G++   I+ + +  ACS       G  +      H+++++
Sbjct: 927  YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 986

Query: 464  FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              I   L      +D++ + G +  +      +  +  AS W A++    IHG
Sbjct: 987  AFIACSL------IDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHG 1032



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 207/408 (50%), Gaps = 12/408 (2%)

Query: 47  GKKIHCSVL-KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+KIH  V        D  +   ++ MY   G  + +R +FD +  ++   WNA+IS Y 
Sbjct: 458 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 517

Query: 106 QSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           ++    E L+   EM     +  D  T   ++  CA   ++  GL +H  +VK GL  ++
Sbjct: 518 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 577

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF---TTM 221
           FV N L++ Y   G +  AL++FD M ER++VSWNS+I  +  S++  +   F      M
Sbjct: 578 FVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF--SDNGFSEESFLLLGEMM 635

Query: 222 QQAG---IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
           ++ G     PD+ TLV++  + A+  +    + VHG+ ++     +++++ NA++DMY+K
Sbjct: 636 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKL-RLDKELVLNNALMDMYSK 694

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYV 337
            G I +A  +F+    K+V+SWNT++ G++  G      +V  QM+    ++  ++ T +
Sbjct: 695 CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 754

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           + +P   H   L    ++H   +K    ++  VA   V  Y KCG +  A  +F+ +   
Sbjct: 755 NAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK 814

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +   WNA+I  H        +L+   QM   G+ PD  T  SLL+ACS
Sbjct: 815 TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 862



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L     +  D    R +H  +        D ++   ++ MYA  G  + +  VF+ L  K
Sbjct: 445 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 504

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++  WN +I+ Y++N L  E +E F  M    ++ P+  TY  ++ A + +  +  G+ +
Sbjct: 505 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 564

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  V+K  L  DVFV   LV  YG  G + DA+ LF  +P  + V WN++I     +G  
Sbjct: 565 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 624

Query: 416 DKALNFFRQMLDE----GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +++     +M++E       PD  T V++L  C+    +  G +  H    +  +   L 
Sbjct: 625 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG-KGVHGWAVKLRLDKELV 683

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
               ++D++ + G +  A   I  M    +   W  ++G     G+
Sbjct: 684 LNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGGFSAEGD 728


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/617 (39%), Positives = 376/617 (60%), Gaps = 3/617 (0%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSG 148
           P   +  +N ++     +G+  +AL +  EM  +  V  D  TVA  L  C+R   +  G
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             I  Y VK GL  + FV ++LI+MYA    +  A  +FD + E  VV WN+II AY ++
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            + +     F  M + G+  D +TLVS+ +   ++ D +  + V  ++  +G  + +  +
Sbjct: 199 GNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKG-LVRNRNL 257

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
             A++DMYAK G +  A  +F+G+  +DV++W+ +I+GY Q     EA+ +F  M+   E
Sbjct: 258 MTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQ-LAE 316

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + PN  T VS+L A + +GAL  G  +H+ + +  L   + + T LVD Y KCG IDDA+
Sbjct: 317 VEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAV 376

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             F  +P  +S  W A+I     +G+G +AL  F  M    + P  +TF+ +L ACSHS 
Sbjct: 377 EAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSC 436

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG+R+F  M +++GIKP  +HYGC+VDL GRAG +  A+ FI+ MP+ P+A IW AL
Sbjct: 437 LVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRAL 496

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L +C +H N+E+G  A  ++  ++  + G Y+L+SNIYA+VG+W+    +R   +DRG++
Sbjct: 497 LSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIE 556

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           KTPG S IE++  V  F+  +  HP+ ++IY ++  +  ++K  GY+P+ + V  +V+E 
Sbjct: 557 KTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEH 616

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE  ++ HSE+LAIAFG++   P + I++ KNLRVC DCH+ TK IS++  REI+VRD 
Sbjct: 617 EKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDR 676

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 677 NRFHHFKDGTCSCNDYW 693



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 226/444 (50%), Gaps = 19/444 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++   +  G   +A+  F +    + + PD +T    LK+C  +     G+ I    +K 
Sbjct: 89  LMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKR 148

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D FV +SL+HMY        A+ LFD +       WNA+I+ Y ++GN +E +++ 
Sbjct: 149 GLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMF 208

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV+ D IT+ S++  C R  +   G  +  Y+ + GL  N  +   LI+MYAK 
Sbjct: 209 KGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKC 268

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD M  RDVV+W+++I+ Y Q++    A   F+ MQ A ++P+ +T+VS+ 
Sbjct: 269 GELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVL 328

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L      + VH +I RR      +I+G A+VD YAK G I+ A   FE +PVK+ 
Sbjct: 329 SACAVLGALETGKWVHSYI-RRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS 387

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +W  LI G A NG   EA+E+F  M + + I P   T++ +L A SH   + +G     
Sbjct: 388 WTWTALIKGMATNGRGREALELFSSMRKAS-IEPTDVTFIGVLMACSHSCLVEEG----- 441

Query: 358 RVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHG 410
           R   + +  D  +        C+VD+ G+ G ID+A      +P   ++V W A++S   
Sbjct: 442 RRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCA 501

Query: 411 IHGQGDKALNFFRQMLDEGVRPDH 434
           +H   +      +Q++   + P H
Sbjct: 502 VHKNVEIGEEALKQIV--SLNPSH 523


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/674 (37%), Positives = 380/674 (56%), Gaps = 43/674 (6%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           +F   S+L  Y +    + A + F+DM  RD  SWN MI+   QSG   EAL ++ EM  
Sbjct: 194 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 253

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
           +GV +D  T  S L  CAR  ++  G  +H  +++   + + +V++ LI +YAK G  + 
Sbjct: 254 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 313

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A RVF+ + +R+ VSW  +I    Q      +   F  M+   +  D   L +L S    
Sbjct: 314 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 373

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
             D    R +H   ++ G     +++ N+++ +YAK G + +A  VF  +  +D++SW +
Sbjct: 374 RMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 432

Query: 303 LITGYAQ-----------NGLAS--------------------EAIEVFQMMEECNEINP 331
           +IT Y+Q           +G+A+                    + ++++  M    ++ P
Sbjct: 433 MITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  TYV++    + +GA + G +I    +K  L  +V VA   + MY KCGRI +A  LF
Sbjct: 493 DWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLF 552

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +     V WNA+I+ +  HG G +A   F  ML +G +PD+I++V++L+ CSHSGLV 
Sbjct: 553 DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQ 612

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG+ YF MM    GI P L+H+ CMVDL GRAGHL  A + I  MP++P A +WGALL A
Sbjct: 613 EGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 672

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IHGN EL  +A+  +FE+DS + G Y+L++ IY++ GK +   +VR L RD+G+KK P
Sbjct: 673 CKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNP 732

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G+S +EV NKV +F   + +HP+   I +++  L  K+  LGYV           E  + 
Sbjct: 733 GYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVR---------TESPRS 783

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
            I   HSE+LA+AFGI+S P   PI I KNLR+CGDCH   K IS +T+RE ++RD  RF
Sbjct: 784 EI--HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRF 841

Query: 692 HHFKDGICSCGDYW 705
           HHFK G CSCGDYW
Sbjct: 842 HHFKSGSCSCGDYW 855



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 255/508 (50%), Gaps = 46/508 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+   + GR+ EA+    +     G+R D  T+   L AC  L     GK++H  V++ 
Sbjct: 231 MIAALSQSGRVREALGLVVEMH-RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 289

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D +VA++L+ +Y + G    A+++F+ +  R+S SW  +I G  Q     +++++ 
Sbjct: 290 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 349

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++MR E +++D   +A+++  C    ++  G  +H   +K G    + VSN+LI++YAK 
Sbjct: 350 NQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKC 409

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM---------------- 221
           G +++A  VF  M ERD+VSW S+I AY Q  + I A  FF  M                
Sbjct: 410 GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 469

Query: 222 ----------------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
                            Q  + PD +T V+L    A +   +    + G  ++ G  + +
Sbjct: 470 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLIL-N 528

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V + NA + MY+K G I+ A  +F+ L  KDV+SWN +ITGY+Q+G+  +A + F  M  
Sbjct: 529 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 588

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQG---IKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
                P+  +YV++L   SH G +++G     +  RV       + F  +C+VD+ G+ G
Sbjct: 589 -KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF--SCMVDLLGRAG 645

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            + +A  L  ++P + ++  W A++S   IHG  D+      + + E   PD  +++ L 
Sbjct: 646 HLTEAKDLIDKMPMKPTAEVWGALLSACKIHGN-DELAELAAKHVFELDSPDSGSYMLLA 704

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPH 469
              S +G   +  +   +M+++ GIK +
Sbjct: 705 KIYSDAGKSDDSAQVRKLMRDK-GIKKN 731



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 163/392 (41%), Gaps = 66/392 (16%)

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E N+   N ++N YAK G +  A  +FD+M  RDV SWN++++   +      + G    
Sbjct: 84  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW---FMEDVIIGNAVVDM-- 275
            + A   P LL L                           W   F  D  +  A+VDM  
Sbjct: 144 RELA---PQLLGLF--------------------------WKFDFWGDPDVETALVDMFV 174

Query: 276 -----------------------------YAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                                        YAKL  I+ A   FE +  +DV+SWN +I  
Sbjct: 175 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 234

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            +Q+G   EA+ +   M     +  +  TY S L A + + +L  G ++HA+VI++    
Sbjct: 235 LSQSGRVREALGLVVEMHR-KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 293

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           D +VA+ L+++Y KCG   +A  +F  +   +SV W  +I     +    K++  F QM 
Sbjct: 294 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 353

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            E +  D     +L++ C +   +  G R  H +  + G    +     ++ L+ + G L
Sbjct: 354 AELMAIDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 412

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
             A     +M  R D   W +++ A    GN+
Sbjct: 413 QNAEFVFSSMSER-DIVSWTSMITAYSQIGNI 443



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 46/302 (15%)

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-LPVKDVISWNTLITGY 307
           +R++HG ++  G     V + N ++  Y   G ++ A  +    +   +VI+ N ++ GY
Sbjct: 39  ARALHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGY 97

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCF 366
           A+ G  S+A E+F  M   +  + N     +  PA S +     G + +  +++     F
Sbjct: 98  AKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKF 157

Query: 367 DVF----VATCLVDMYGKCGRIDDAMSLFYQVPRSS------------------------ 398
           D +    V T LVDM+ +CG +D A  LF Q+ R +                        
Sbjct: 158 DFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYF 217

Query: 399 -------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
                   V WN +I+     G+  +AL    +M  +GVR D  T+ S LTAC+   L S
Sbjct: 218 EDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR--LFS 275

Query: 452 EG---QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            G   Q +  +++    I P++     +++L+ + G    A     ++  R   S W  L
Sbjct: 276 LGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVL 332

Query: 509 LG 510
           +G
Sbjct: 333 IG 334


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/573 (41%), Positives = 346/573 (60%), Gaps = 3/573 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           AS+L  C     I  G  +H  +   G  F+  ++  L+N+Y     +  A  +FD++ +
Sbjct: 79  ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPK 138

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            ++  WN +I  Y  +     A   +  M   G+ PD  T   +    A L+   + R +
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  +++ GW  +DV +G A++DMYAK G + SA  VF+ + V+D + WN+++  Y+QNG 
Sbjct: 199 HEHVVQTGW-EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
               + +   M     + P + T V+ + A +   AL QG ++H    +        V T
Sbjct: 258 PDACLSLCSEMV-LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKT 316

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LVDMY KCG +  A +LF ++     V WNA+I+ + +HG   +AL+ F +M +   +P
Sbjct: 317 ALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKP 375

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           DHITFV +L+ACSH GL+ EG  +F  M  ++ I P ++HY CMVDL G +G L  A+N 
Sbjct: 376 DHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNL 435

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I  M V PD+ +WGALL +C+IH N+ELG +A +RL E++ ++ G YV++SNIYA  GKW
Sbjct: 436 IMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKW 495

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           EGV ++R L  DR LKK+   S IEV NKV  F +G+ +HP  ++IY EL  +   MK  
Sbjct: 496 EGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEA 555

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GY P    V  DVE+DEK +++ SHSERLAIAFG+IS+PP + + I KNLR+C DCH   
Sbjct: 556 GYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAI 615

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KFIS+ITEREI VRD NR+HHFKDG+CSCGDYW
Sbjct: 616 KFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 213/397 (53%), Gaps = 12/397 (3%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           ++ L P +  +  +L++C   + +  GK++H  V   GF +D  +A  L+++YC     +
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            AR LFD +P  +   WN +I GY  +G    A+ +  +M   G+  D  T   +L  CA
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               I  G  IH ++V+ G E ++FV   LI+MYAK G +  A  VFD+++ RD V WNS
Sbjct: 188 ALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNS 247

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           ++AAY Q+  P       + M   G++P   TLV+  S  A        R +HG   R+ 
Sbjct: 248 MLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQE 307

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           +   D  +  A+VDMYAK G +  A  +FE L VK V+SWN +ITGYA +G A+EA+++F
Sbjct: 308 FESHDK-VKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLF 366

Query: 321 QMMEECNEI-NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDM 377
              EE N +  P+  T+V +L A SH G L +G      +I++    D  V   TC+VD+
Sbjct: 367 ---EEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRD-YKIDPTVQHYTCMVDL 422

Query: 378 YGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
            G  GR+D+A +L  Q+     S  W A+++   IH 
Sbjct: 423 LGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHA 459



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 164/362 (45%), Gaps = 50/362 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    AV  +YQ     GL PD +TFP VLKAC  L     G++IH  V++ 
Sbjct: 147 LIRGYAWNGPYEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT 205

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E DVFV A+L+ MY + G    AR++FD + VRD+  WN+M++ Y Q+G+    L + 
Sbjct: 206 GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLC 265

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L G+     T+ + +   A +  +  G  +H    +   E +  V   L++MYAK 
Sbjct: 266 SEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKC 325

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R A  +F+++  + VVSWN++I  Y        A   F  M +   +PD +T V + 
Sbjct: 326 GSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVL 384

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  +           HG ++  GW   + +I +  +D                      V
Sbjct: 385 SACS-----------HGGLLEEGWMFFETMIRDYKID--------------------PTV 413

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
             +  ++     +G   EA  +   M    ++ P+ G +          GAL    KIHA
Sbjct: 414 QHYTCMVDLLGHSGRLDEAYNLIMQM----KVLPDSGVW----------GALLNSCKIHA 459

Query: 358 RV 359
            V
Sbjct: 460 NV 461



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 2/193 (1%)

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           E   + P    Y S+L +     A++ G ++HA+V      FD  +AT LV++Y  C  +
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
             A  LF ++P+ +   WN +I  +  +G  + A+  + QM D G+ PD+ TF  +L AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +    +  G R  H    + G +  +     ++D++ + G +G A      + VR DA +
Sbjct: 187 AALSAIEHG-REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVL 244

Query: 505 WGALLGACRIHGN 517
           W ++L A   +G+
Sbjct: 245 WNSMLAAYSQNGH 257


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 372/609 (61%), Gaps = 7/609 (1%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN ++S + ++G    AL +   +       +  T    L  CAR  ++ +   + +   
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALP-SSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             G   ++FV + L+++Y++ G M  A+RVFD M  +D V+W++++A +  +  P+ A  
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            ++ M++ G+  D + +V +        + R   SVHG ++R    M DV+   ++V MY
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRM-DVVTTTSLVSMY 253

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           AK G ++ AC VF  +P ++ ++W+ LI+G+AQNG A EA+++F+ ++  + + P     
Sbjct: 254 AKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQ-ADGLQPCSWAL 312

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           VS L A + VG L+ G  IH  +++  L +   + T ++DMY KCG ++ A  LF ++  
Sbjct: 313 VSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSS 371

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V WNAII+C G HG G  AL  F+++ + G++PDH TF SLL+A SHSGLV EG+ +
Sbjct: 372 RDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 431

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F  M +EFGI+P  KHY C+VDL  R+G +  A++ + +M   P  +IW  LL  C  + 
Sbjct: 432 FDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNK 491

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            +ELG   + ++ E+  E++G   L+SN+YA   KW+ V E+R L +D G KK PG+S I
Sbjct: 492 KLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLI 551

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EV      F   +++HP++ +I   +  L ++M+ LGYVP   FV  D++ED+   +L+ 
Sbjct: 552 EVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQ---LLSY 608

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSERLAIAFG++++ P + + I KNLRVCGDCH+  K+IS+I +REI+VRD+ RFHHFKD
Sbjct: 609 HSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKD 668

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 669 GACSCGDYW 677



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 235/451 (52%), Gaps = 20/451 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S + R G    A+  F    L S  RP+  TF   L AC  L D    + +       
Sbjct: 79  LLSAHSRAGAPGAALRVFR--ALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAA 136

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+  DVFV ++LLH+Y R G    A ++FD MP +D  +W+ M++G+  +G  VEAL + 
Sbjct: 137 GYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMY 196

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR  GVS D + +  ++  C  + N   G  +H  +++H +  ++  + +L++MYAK 
Sbjct: 197 SRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKN 256

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A +VF  M  R+ V+W+++I+ + Q+   + A   F  +Q  G+QP    LVS  
Sbjct: 257 GHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSAL 316

Query: 238 SIVAQLNDCRNSRSVHGFIMRR-GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              A +   +  +S+HGFI+RR  W     I+G AV+DMY+K G + SA  +F  L  +D
Sbjct: 317 LACASVGFLKLGKSIHGFILRRLEW---QCILGTAVLDMYSKCGSLESARKLFNKLSSRD 373

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++ WN +I     +G   +A+ +FQ + E   I P+  T+ S+L A SH G + +G    
Sbjct: 374 LVLWNAIIACCGTHGCGHDALALFQELNETG-IKPDHATFASLLSALSHSGLVEEGKFWF 432

Query: 357 ARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
            R+IK    F +  A     C+VD+  + G +++A  +   +    ++  W  ++S    
Sbjct: 433 DRMIKE---FGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLN 489

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           + + +      +++L+  +RP+ I  ++L++
Sbjct: 490 NKKLELGETIAKKILE--LRPEDIGVLALVS 518


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/555 (41%), Positives = 349/555 (62%), Gaps = 2/555 (0%)

Query: 151  IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
            +H     HG+  NL V+N L+  Y+ +  +  A  +FD M  RD VSW+ ++  + +  D
Sbjct: 757  VHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 816

Query: 211  PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
             +   G F  + + G +PD  TL  +      L + +  R +H  + + G  + D  +  
Sbjct: 817  YMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL-DHFVCA 875

Query: 271  AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            A+VDMY K   I  A  +F+ +  +D+++W  +I GYA+ G A+E++ +F  M E   + 
Sbjct: 876  ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVV 934

Query: 331  PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            P++   V+++ A + +GA+ +   I   + +     DV + T ++DM+ KCG ++ A  +
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994

Query: 391  FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
            F ++   + + W+A+I+ +G HGQG KAL+ F  ML  G+ P+ IT VSLL ACSH+GLV
Sbjct: 995  FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 1054

Query: 451  SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             EG R+F  M E++ ++  +KHY C+VDL GRAG L  A   I +M    D  +WGA LG
Sbjct: 1055 EEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLG 1114

Query: 511  ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            ACR H ++ L   A+  L E+  +N G+Y+L+SNIYAN G+WE V ++R L   R LKK 
Sbjct: 1115 ACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKI 1174

Query: 571  PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
            PGW+ IEV+NK   F  G+ THP+ ++IY+ L++L  K++ +GYVPD +FVL DV+E+ K
Sbjct: 1175 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELK 1234

Query: 631  EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
              IL +HSE+LAIAFG+I++P  +PI+I KNLRVCGDCH + K +S IT R IIVRD+NR
Sbjct: 1235 IGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANR 1294

Query: 691  FHHFKDGICSCGDYW 705
            FHHFK+G CSCGDYW
Sbjct: 1295 FHHFKEGACSCGDYW 1309



 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/513 (40%), Positives = 319/513 (62%), Gaps = 2/513 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H     HG+  N+ V+N LI  Y+ +  +  A  +FD M  RD VSW+ ++  + +  D
Sbjct: 81  VHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 140

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            I   G F  + + G +PD  TL  +      L + +  R +H  + + G  + D  +  
Sbjct: 141 YINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL-DHFVCA 199

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A+VDMY K   I  A  +F+ +  +D+++W  +I GYA+ G A+E++ +F+ M E   + 
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVV 258

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P++   V+++ A + +GA+ +   I   + +     DV + T ++DMY KCG ++ A  +
Sbjct: 259 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 318

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++   + + W+A+I+ +G HGQG KAL+ F  ML  G+ PD IT  SLL ACSH+GLV
Sbjct: 319 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG R+F  M E++ ++  +KHY C+VDL GRAG L  A   I++M +  D  +WGA LG
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLG 438

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           ACR H ++ L   A+  L E+ S+N G+YVL+SNIYAN G+WE V ++R L   R LKKT
Sbjct: 439 ACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PGW+ IEV+NK   F  G+ THP+ ++IY+ L++L+ K++ +GYVPD +FVL DV+E+ K
Sbjct: 499 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELK 558

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
             IL +HSE+LAIAFG+I++P  +PI+I KNLR
Sbjct: 559 IGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 199/372 (53%), Gaps = 5/372 (1%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           +F     L P FY     L  CRNL   +++H      G   ++ VA  L++ Y  +   
Sbjct: 53  KFHFLQRLNPKFYI--SALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRAL 110

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + A  LFD M VRDS SW+ M+ G+ + G+ +       E+   G   D  T+  ++  C
Sbjct: 111 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC 170

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
               N+  G LIH  + K GL+ + FV   L++MY K   +  A  +FD+M ERD+V+W 
Sbjct: 171 RDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWT 230

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            +I  Y +      +   F  M++ G+ PD + +V++    A+L     +R +  +I R+
Sbjct: 231 VMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRK 290

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
             F  DVI+G A++DMYAK G + SA  +F+ +  K+VISW+ +I  Y  +G   +A+++
Sbjct: 291 K-FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 349

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMY 378
           F MM     + P++ T  S+L A SH G + +G++  + + ++  +  DV   TC+VD+ 
Sbjct: 350 FPMMLSSGML-PDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLL 408

Query: 379 GKCGRIDDAMSL 390
           G+ GR+D+A+ L
Sbjct: 409 GRAGRLDEALKL 420



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 192/349 (55%), Gaps = 3/349 (0%)

Query: 43   NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
            NL   +++H      G   ++ VA  L+  Y  +   + A  LFD M VRDS SW+ M+ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 103  GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
            G+ + G+ +       E+   G   D  T+  ++  C    N+  G LIH  + K GL+ 
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 163  NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
            + FV   L++MY K   +  A  +FD+M ERD+V+W  +I  Y +  +   +   F  M+
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 223  QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
            + G+ PD + +V++    A+L     +R++  +I R+  F  DVI+G A++DM+AK G +
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK-FQLDVILGTAMIDMHAKCGCV 988

Query: 283  NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             SA  +F+ +  K+VISW+ +I  Y  +G   +A+++F MM     I PN+ T VS+L A
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG-ILPNKITLVSLLYA 1047

Query: 343  YSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSL 390
             SH G + +G++  + + ++  +  DV   TC+VD+ G+ GR+D+A+ L
Sbjct: 1048 CSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKL 1096



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 170/353 (48%), Gaps = 8/353 (2%)

Query: 9   GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
            ++ + ++CF  F   +  G RPD YT P V++ACR+L +   G+ IH  V K G + D 
Sbjct: 136 AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH 195

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           FV A+L+ MY +      AR LFD M  RD  +W  MI GY + G A E+L + ++MR E
Sbjct: 196 FVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREE 255

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           GV  D + + +++  CA+   +    +I  YI +   + ++ +   +I+MYAK G +  A
Sbjct: 256 GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 315

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             +FD+M E++V+SW+++IAAY        A   F  M  +G+ PD +TL SL    +  
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNT 302
                       +        DV     VVD+  + G ++ A  + + + + KD   W  
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            +     +     A +    + E    NP  G YV +   Y++ G      KI
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNP--GHYVLLSNIYANAGRWEDVAKI 486



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 170/353 (48%), Gaps = 8/353 (2%)

Query: 9    GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDV 63
             ++ + ++CF  F   +  G RPD YT P V++ACR+L +   G+ IH  V K G + D 
Sbjct: 812  AKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH 871

Query: 64   FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
            FV A+L+ MY +      AR LFD M  RD  +W  MI GY + GNA E+L + D+MR E
Sbjct: 872  FVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREE 931

Query: 124  GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            GV  D + + +++  CA+   +     I  YI +   + ++ +   +I+M+AK G +  A
Sbjct: 932  GVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESA 991

Query: 184  LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
              +FD+M E++V+SW+++IAAY        A   F  M ++GI P+ +TLVSL    +  
Sbjct: 992  REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051

Query: 244  NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNT 302
                        +        DV     VVD+  + G ++ A  +   +   KD   W  
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111

Query: 303  LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
             +     +     A +    + E    NP  G Y+ +   Y++ G      KI
Sbjct: 1112 FLGACRTHKDVXLAEKAATSLLELQPQNP--GHYILLSNIYANAGRWEDVAKI 1162



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L Q  ++H +   + +  ++ VA  LV  Y     +DDA  LF  +    SV W+ ++  
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
               G        FR+++  G RPD+ T   ++ AC     +  G R  H +  +FG+  
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGLD- 868

Query: 469 HLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            L H+ C  +VD++G+   +  A      M  R D   W  ++G     GN     V  D
Sbjct: 869 -LDHFVCAALVDMYGKCREIEDARFLFDKMXER-DLVTWTVMIGGYAECGNANESLVLFD 926

Query: 527 RLFE 530
           ++ E
Sbjct: 927 KMRE 930



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 11/187 (5%)

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +NP    Y+S L    ++  +RQ   +HA+   + +  ++ VA  L+  Y     +DD
Sbjct: 58  QRLNPK--FYISALVNCRNLTQVRQ---VHAQASVHGMLENIVVANKLIYFYSYYRALDD 112

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  LF  +    SV W+ ++      G        FR+++  G RPD+ T   ++ AC  
Sbjct: 113 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 172

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
              +  G R  H +  +FG+   L H+ C  +VD++ +   +  A      M  R D   
Sbjct: 173 LKNLQMG-RLIHHIVYKFGLD--LDHFVCAALVDMYVKCREIEDARFLFDKMQER-DLVT 228

Query: 505 WGALLGA 511
           W  ++G 
Sbjct: 229 WTVMIGG 235


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/667 (37%), Positives = 393/667 (58%), Gaps = 5/667 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD--DMPVRDSGSWNA 99
           R+L    +IH  ++   +    F+  +L+++Y + G  N A  LF       +   +W +
Sbjct: 156 RSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTS 215

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +I+        ++AL + ++MR  G   +  T +SIL   A +  +L G  +H  I KHG
Sbjct: 216 LITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHG 275

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
            + N+FV   L++MYAK   M  A+RVFDQM ER++VSWNS+I  +  +N    A G F 
Sbjct: 276 FDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFK 335

Query: 220 -TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             +++  + P+ +++ S+ S  A +      R VHG +++ G  +    + N+++DMY K
Sbjct: 336 DVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYG-LVPLTYVMNSLMDMYFK 394

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
               +    +F+ +  +DV++WN L+ G+ QN    EA   F +M     I P++ ++ +
Sbjct: 395 CRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR-EGILPDEASFST 453

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +L + + + AL QG  IH ++IK     ++ +   L+ MY KCG + DA  +F  +   +
Sbjct: 454 VLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHN 513

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            + W A+IS + +HG  ++ +  F  ML EG+ P H+TFV +L+ACSH+G V EG  +F+
Sbjct: 514 VISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFN 573

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M++   + P  +HY CMVDL GRAG L  A  FI++MP++P  S+WGALLGACR +GN+
Sbjct: 574 SMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNL 633

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           ++G  A++RLFE++  N G YVL++N+    G+ E  +EVR L    G++K PG S I+V
Sbjct: 634 KMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDV 693

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            N   +F   +R+H   ++IY  L  L   +K  GYV +  FV   +EE+E+E  L  HS
Sbjct: 694 KNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHS 753

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LA+AFG+++ P  SPI+I KNLR CG CH   K  S+I +REIIVRD NRFH F DG 
Sbjct: 754 EKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGF 813

Query: 699 CSCGDYW 705
           CSCGDYW
Sbjct: 814 CSCGDYW 820



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 193/384 (50%), Gaps = 5/384 (1%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-- 192
           +L    ++ ++     IH  I+ +      F+ NNLIN+YAK G +  AL +F       
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           + +V+W S+I      N  + A   F  M+ +G  P+  T  S+ S  A      + + +
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  I + G F  ++ +G A+VDMYAK   ++SA  VF+ +P ++++SWN++I G+  N L
Sbjct: 268 HSLIHKHG-FDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
              A+ VF+ +     + PN+ +  S+L A +++G L  G ++H  V+K  L    +V  
Sbjct: 327 YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMN 386

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+DMY KC   D+ + LF  V     V WN ++     + + ++A N+F  M  EG+ P
Sbjct: 387 SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILP 446

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  +F ++L + +    + +G    H    + G   ++   G ++ ++ + G L  A+  
Sbjct: 447 DEASFSTVLHSSASLAALHQGTA-IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 493 IQNMPVRPDASIWGALLGACRIHG 516
            + +      S W A++ A ++HG
Sbjct: 506 FEGIEDHNVIS-WTAMISAYQLHG 528


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/725 (36%), Positives = 393/725 (54%), Gaps = 86/725 (11%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDE 119
           DV    +L+  Y   G   +AR++F++ P+  RD+  +NAMI+GY    +   A+++   
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 120 MRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           MR      D  T AS+L        D    G + H  +VK G+E    V N L+++Y K 
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQM-HGTVVKFGIEIFPAVLNALLSVYVKC 196

Query: 178 GM---------MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA-------------- 214
                      M  A ++FD+M +R+   W ++I  Y ++ D   A              
Sbjct: 197 ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA 256

Query: 215 ----------HGFFT-------TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
                     HG F         M+  G+Q D  T  S+ S  A        + VH +I+
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 258 R------RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY---- 307
           +      R + +    +GN ++ +Y K G ++ A  +F  +PVKD+I+WNTL++GY    
Sbjct: 317 KNELNPDRDFLLS---VGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAG 373

Query: 308 ---------------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
                                      AQNG   +A+++F  M+  +   PN   +   +
Sbjct: 374 RMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMK-LDGYEPNDYAFAGAI 432

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A S +GAL  G ++HA+++       + V   ++ MY +CG ++ A ++F  +P    V
Sbjct: 433 TACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPV 492

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            WN++I+  G HG G KA+  + QML EG+ PD  TF+++L+ACSH+GLV EG RYF+ M
Sbjct: 493 SWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSM 552

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
            E +GI P   HY  M+DLF RAG    A N I +MP    A IW ALL  CR HGNM+L
Sbjct: 553 LENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDL 612

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G  A+++LF++  ++ G YVL+SN+YA++G+W  V   R L RDRG+KK P  S  EV N
Sbjct: 613 GIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVEN 672

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           KV +F   +  HP+   IY+ L  L  +MK +GY+PD  +VL D+E + KE+ L++HSE+
Sbjct: 673 KVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEK 732

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LA+AFG++  P  + +++FKNLR+CGDCHN  KF+S++  REI+VRD  RFHHFK+G CS
Sbjct: 733 LAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECS 792

Query: 701 CGDYW 705
           C +YW
Sbjct: 793 CRNYW 797



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 144/552 (26%), Positives = 252/552 (45%), Gaps = 94/552 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK----IHCSVLK 56
           MI+ Y        A++ F      +  +PD +TF  VL A   +   ++    +H +V+K
Sbjct: 118 MITGYSHMNDGHSAIELFRAMRW-ANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVK 176

Query: 57  LGFEWDVFVAASLLHMYCRFGLANV---------ARKLFDDMPVRDSG------------ 95
            G E    V  +LL +Y +   + +         ARKLFD+MP R+              
Sbjct: 177 FGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRN 236

Query: 96  -------------------SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
                              +WNAMISGY   G   +AL +  +MRL GV +D  T  S++
Sbjct: 237 GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVI 296

Query: 137 PVCARSDNILSGLLIHLYIVKHGL----EFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
             CA     L G  +H YI+K+ L    +F L V N LI +Y K+G +  A ++F +M  
Sbjct: 297 SACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV 356

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTM---------------------QQA------- 224
           +D+++WN++++ Y  +     A  FF  M                     +QA       
Sbjct: 357 KDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416

Query: 225 ---GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
              G +P+        +  + L    N R +H  I+  G     + +GNA++ MYA+ GI
Sbjct: 417 KLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLG-HDSTLSVGNAMITMYARCGI 475

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSIL 340
           + +A  +F  +P  D +SWN++I    Q+G   +AIE++ QM++E   I P++ T++++L
Sbjct: 476 VEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEG--ILPDRRTFLTVL 533

Query: 341 PAYSHVGALRQGIKIHARVIKN---CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
            A SH G + +G +    +++N       D +    ++D++ + G+  DA ++   +P  
Sbjct: 534 SACSHAGLVEEGNRYFNSMLENYGIAPGEDHYAR--MIDLFCRAGKFSDAKNVIDSMPFE 591

Query: 398 SSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQR 455
           +  P W A+++    HG  D  +    ++    + P H  T+V L    +  G  ++  R
Sbjct: 592 ARAPIWEALLAGCRTHGNMDLGIEAAEKLFK--LIPQHDGTYVLLSNMYASLGRWNDVAR 649

Query: 456 YFHMMQEEFGIK 467
              +M++  G+K
Sbjct: 650 TRKLMRDR-GVK 660



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 188/475 (39%), Gaps = 111/475 (23%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------ 192
           +H +++  G +    + N LI++Y K     +A ++FD++ +                  
Sbjct: 35  VHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGN 94

Query: 193 ---------------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-L 236
                          RD V +N++I  Y   ND  +A   F  M+ A  QPD  T  S L
Sbjct: 95  LKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVL 154

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG---------IINSACA 287
           ++      D R    +HG +++ G  +   ++ NA++ +Y K           ++ SA  
Sbjct: 155 SASTLIFYDERQCGQMHGTVVKFGIEIFPAVL-NALLSVYVKCASSPLVSSSSLMASARK 213

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN--------------- 332
           +F+ +P ++   W TLITGY +NG  + A E+   M E   I  N               
Sbjct: 214 LFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDA 273

Query: 333 ---------------QGTYVSILPAYSHVGALRQGIKIHARVIKNCLC----FDVFVATC 373
                          + TY S++ A +  G    G ++HA ++KN L     F + V   
Sbjct: 274 LTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNT 333

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH------------------------ 409
           L+ +Y K G++D A  +FY++P    + WN ++S +                        
Sbjct: 334 LITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTW 393

Query: 410 -------GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
                    +G G++AL  F QM  +G  P+   F   +TACS  G +  G R  H    
Sbjct: 394 TVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENG-RQLHAQIV 452

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             G    L     M+ ++ R G +  A      MP   D   W +++ A   HG+
Sbjct: 453 HLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGH 506



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 132/315 (41%), Gaps = 52/315 (16%)

Query: 255 FIMRRGWFME----DVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYA 308
           F+  R  F E    DVI    ++  Y+ LG +  A  +F   P+  +D + +N +ITGY+
Sbjct: 64  FVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYS 123

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS------------HVGALRQGIKIH 356
                  AIE+F+ M   N   P+  T+ S+L A +            H   ++ GI+I 
Sbjct: 124 HMNDGHSAIELFRAMRWAN-FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIF 182

Query: 357 ARVIKNCLCFDV-----------------------------FVATCLVDMYGKCGRIDDA 387
             V+   L   V                             F+ T L+  Y + G +  A
Sbjct: 183 PAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGA 242

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +   +     + WNA+IS +  HG  + AL  FR+M   GV+ D  T+ S+++AC+  
Sbjct: 243 REILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADG 302

Query: 448 GLVSEG-QRYFHMMQEEFGI-KPHLKHYG-CMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           G    G Q + ++++ E    +  L   G  ++ L+ + G +  A      MPV+ D   
Sbjct: 303 GFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIIT 361

Query: 505 WGALLGACRIHGNME 519
           W  LL      G ME
Sbjct: 362 WNTLLSGYVNAGRME 376


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/676 (36%), Positives = 387/676 (57%), Gaps = 34/676 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM- 120
           ++F   +LL       L     +LF  MP RD+ S+NA+I+G+  +G+   ++ +   + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R E V    IT+++++ V +   +   G  +H  +++ G     FV + L++MYAK G++
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 181 RHALRVFDQ-------------------------------MMERDVVSWNSIIAAYEQSN 209
           R A RVF +                               M++RD ++W +++    Q+ 
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
             + A   F  M+  G+  D  T  S+ +    L      + +H +I R  W+ ++V +G
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT-WYEDNVFVG 316

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           +A+VDMY+K   I  A AVF  +  +++ISW  +I GY QN  + EA+  F  M + + I
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEM-QMDGI 375

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S++ + +++ +L +G + H   + + L   + V+  LV +YGKCG I+DA  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF ++     V W A+++ +   G+  + ++ F +ML  G++PD +TF+ +L+ACS +GL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGL 495

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G  YF  MQ++  I P   HY CM+DL+ R+G    A  FI+ MP  PDA  W  LL
Sbjct: 496 VEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            +CR+ GNME+G  A++ L E D +N   YVL+ +++A  G+W  V  +R   RDR +KK
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S I+  NKV IF   +++HP   +IY++L  L +KM   GY PD S VL DV + +
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADAD 675

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K H+++ HSE+LAIAFG+I  P + PI+I KNLRVC DCHN TKFIS+IT R+I+VRD+ 
Sbjct: 676 KVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 735

Query: 690 RFHHFKDGICSCGDYW 705
           RFH F DG CSCGD+W
Sbjct: 736 RFHKFSDGTCSCGDFW 751



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 212/452 (46%), Gaps = 44/452 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ +   G  + +V  +        +RP   T   ++     L D   G  +HC VL+L
Sbjct: 116 LITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRL 175

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV-------------------------- 91
           GF    FV + L+ MY + GL   AR++F +M                            
Sbjct: 176 GFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 92  -----RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
                RDS +W  M++G  Q+G  +EALD+   MR EGV +D  T  SIL  C       
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASE 295

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  IH YI +   E N+FV + L++MY+K   +R A  VF +M  R+++SW ++I  Y 
Sbjct: 296 EGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYG 355

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q+     A   F+ MQ  GI+PD  TL S+ S  A L         H   +  G  M  +
Sbjct: 356 QNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG-LMRYI 414

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            + NA+V +Y K G I  A  +F+ +   D +SW  L+TGYAQ G A E I++F+ M   
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM-LV 473

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCG 382
           N + P+  T++ +L A S  G + +G      + K+    D+       TC++D+Y + G
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKD---HDIVPIDDHYTCMIDLYSRSG 530

Query: 383 RIDDAMSLFYQVPRS-SSVPWNAIISCHGIHG 413
           R  +A     Q+P S  +  W  ++S   + G
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 201/423 (47%), Gaps = 68/423 (16%)

Query: 151 IHLYIVKHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQ-------------------- 189
           +H  I+K  L+    F+ N+L+  YAK G +  A RVFD+                    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 190 -----------MMERDVVSWNSIIAAYEQSNDPITAHGFFTT-MQQAGIQPDLLTLVSLT 237
                      M ERD VS+N++I  +  +  P  +   +   +++  ++P  +TL ++ 
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-- 295
            + + L+D     SVH  ++R G F     +G+ +VDMYAK+G+I  A  VF+ +  K  
Sbjct: 154 MVASALSDRALGHSVHCQVLRLG-FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 296 -----------------------------DVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                                        D I+W T++TG  QNGL  EA++VF+ M   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRM-RA 271

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  +Q T+ SIL A   + A  +G +IHA + +     +VFV + LVDMY KC  I  
Sbjct: 272 EGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRL 331

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A ++F ++   + + W A+I  +G +   ++A+  F +M  +G++PD  T  S++++C++
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              + EG + FH +    G+  ++     +V L+G+ G +  AH     M      S W 
Sbjct: 392 LASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WT 449

Query: 507 ALL 509
           AL+
Sbjct: 450 ALV 452



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 9/362 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           M++   + G   EA+D F +     G+  D YTF  +L AC  L    +GK+IH  + + 
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMR-AEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT 307

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +E +VFV ++L+ MY +     +A  +F  M  R+  SW AMI GY Q+  + EA+   
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAF 367

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+++G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 368 SEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M   D VSW +++  Y Q          F  M   G++PD +T + + 
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVL 487

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKD 296
           S  ++             + +    +        ++D+Y++ G    A    + +P   D
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPD 547

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSHVGALRQG 352
              W TL++     G         + + E +  NP     +  + A    ++ V  LR+G
Sbjct: 548 AFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRG 607

Query: 353 IK 354
           ++
Sbjct: 608 MR 609


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/709 (35%), Positives = 388/709 (54%), Gaps = 66/709 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   SLL M+ + G    AR +F +MP RD+ SW  M+ G  ++G   EA+  L +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----- 176
            +G +    T+ ++L  CA +     G  +H ++VK GL   + V+N+++NMY K     
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 177 --------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                                      G M  A  +F+ M  R +VSWN++IA Y Q+  
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 211 PITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR---------- 259
              A   F+ M  ++ + PD  T+ S+ S  A L + R  + VH +I+R           
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 260 -------------------GWFME---DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                                 ME   +VI   A+++ Y K+G + SA  +F  +  +DV
Sbjct: 337 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 396

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W  +I GY QNG   EAI++F+ M  C    PN  T  ++L   + +  L  G +IH 
Sbjct: 397 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           R I++ L     V+  ++ MY + G    A  +F QV  R  ++ W ++I     HGQG+
Sbjct: 456 RAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +ML  GV PD IT+V +L+ACSH+G V+EG+RY+  ++ E  I P + HY CM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG    A  FI+ MPV PDA  WG+LL ACR+H N EL  +A+++L  +D  N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y  ++N+Y+  G+W     +    +++ ++K  G+S   + +K+ +F   +  HP+ +
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            +Y     +  ++K  G+VPD   VL DV+++ KE +L+ HSE+LAIAFG+IS+P K+ +
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLRVC DCH   K IS++T+REIIVRD+ RFHHF+DG+CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 204/488 (41%), Gaps = 103/488 (21%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF----GMMRHALRVFD 188
           A +L +C  + N  +G  IH   VK GL  + ++ NNL++ Y +     G +R A R+FD
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 189 Q--MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA---------------------- 224
           +  +  R+V +WNS+++ + +S     A G F  M +                       
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 225 ---------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
                    G  P   TL ++ S  A        R VH F+++ G     V + N+V++M
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNM 208

Query: 276 YAKLGIINSACAVFEGLPVKDV-------------------------------ISWNTLI 304
           Y K G   +A  VFE +PV+ V                               +SWN +I
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GY QNGL ++A+++F  M   + + P++ T  S+L A +++G +R G ++HA +++  +
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--------------------------- 397
            ++  V   L+  Y K G +++A  +  Q   +                           
Sbjct: 329 AYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 398 ------SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
                   V W A+I  +  +G+ D+A++ FR M+  G  P+  T  ++L+ C+    + 
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            G++  H       ++        ++ ++ R+G    A      +  R +   W +++ A
Sbjct: 449 YGKQ-IHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 512 CRIHGNME 519
              HG  E
Sbjct: 508 LAQHGQGE 515



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 175/397 (44%), Gaps = 48/397 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y + G  ++A+  F +    S + PD +T   VL AC NL +   GK++H  +L+ 
Sbjct: 267 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 326

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD----------------------------- 88
              ++  V  +L+  Y + G    AR++ D                              
Sbjct: 327 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 89  ----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
               M  RD  +W AMI GY Q+G   EA+D+   M   G   +  T+A++L VCA    
Sbjct: 387 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 446

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIA 203
           +  G  IH   ++  LE +  VSN +I MYA+ G    A R+FDQ+  R + ++W S+I 
Sbjct: 447 LDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A G F  M +AG++PD +T V + S  +        +  +  I       
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 566

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
            ++     +VD+ A+ G+ + A      +PV+ D I+W +L++    +    LA  A E 
Sbjct: 567 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 626

Query: 320 FQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKI 355
                    I+P N G Y +I   YS  G      +I
Sbjct: 627 LL------SIDPNNSGAYSAIANVYSACGRWSDAARI 657



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 171/385 (44%), Gaps = 81/385 (21%)

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----GIINSACAVFEGLPV--KDVISWNTL 303
           R++H   ++ G  +    + N ++  Y +     G +  A  +F+ +P+  ++V +WN+L
Sbjct: 46  RAIHARAVKAG-LLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEIN------------------------------PNQ 333
           ++ +A++G  ++A  VF  M E + ++                              P Q
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC------------ 381
            T  ++L + +   A   G K+H+ V+K  L   V VA  +++MYGKC            
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFER 224

Query: 382 -------------------GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
                              GR+D A SLF  +P  S V WNA+I+ +  +G   KAL  F
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 423 RQMLDE-GVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            +ML E  + PD  T  S+L+AC++ G V  G Q + ++++ E      + +   ++  +
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTY 342

Query: 481 GRAGHLGMAHNFI-QNMPVRPDASIWGALLGACRIHGNMELGAVASDR-LFEV--DSENV 536
            ++G +  A   + Q+M    +   + ALL      G +++G + S R +F V  + + V
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALL-----EGYVKIGDMESAREMFGVMNNRDVV 397

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSL 561
            +  ++     N    E +D  RS+
Sbjct: 398 AWTAMIVGYEQNGRNDEAIDLFRSM 422


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/773 (34%), Positives = 400/773 (51%), Gaps = 115/773 (14%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---------------- 90
            + +H  +L  GF+ + F+   L+++YC+      ARKLFD +P                
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 91  -----------------VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
                            +RD+ S+NAMI+ Y    +   AL++  +M+  G   DP T +
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 134 SILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA---------KFGMMRHA 183
           S+L   +  +D      ++H  ++K G      V+N L++ Y             +M  A
Sbjct: 144 SVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASA 203

Query: 184 LRVFDQMMERDVV--SWNSIIAAYEQSNDPITAHGF------------------------ 217
            +VFD+  +  +   SW ++IA Y +++D + A                           
Sbjct: 204 RKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGL 263

Query: 218 -------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN----SRSVHGFIMR-------- 258
                  F  M   GIQ D  T  SL S     N+        R VHG+I+R        
Sbjct: 264 YEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHH 323

Query: 259 ----------------------RGWF----MEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
                                 R  F    + D+I  NAV+  Y     I  A ++F  +
Sbjct: 324 FVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEM 383

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P ++V++W  +I+G AQNG   E +++F  M+    + P    +   + A S +G+L  G
Sbjct: 384 PERNVLTWTVMISGLAQNGFGEEGLKLFNQMKS-EGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IH++VI+      +     L+ MY +CG ++ A S+F  +P   SV WNA+I+    H
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G KA+  F QM+ E + PD ITF+++LTAC+H+GL+ EG+ YF  M   +GI P   H
Sbjct: 503 GHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y  ++DL  RAG    A + I++MP    A IW ALL  CRIHGNMELG  A+DRL E+ 
Sbjct: 563 YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELI 622

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
               G Y+++SN+YA +G+W+ V  VR L R+RG+KK PG S +EV N V +F   +  H
Sbjct: 623 PGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARH 682

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ + +Y  L+ L  +MK LGYVPD  FVL D+E + KEH L++HSE+LA+ +GI+  P 
Sbjct: 683 PEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPL 742

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + I++FKNLR+CGDCHN  K+IS++ EREI+VRD  RFHHFK+G CSCG+YW
Sbjct: 743 GATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 249/568 (43%), Gaps = 107/568 (18%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK----IHCSVLK 56
           MI+ Y        A++ F Q     G  PD +TF  VL A   + D ++    +HC V+K
Sbjct: 110 MITAYSHGNDGHAALNLFVQMK-RYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIK 168

Query: 57  LGFEWDVFVAASLLHMYC---------RFGLANVARKLFDDMP----------------V 91
           LG      V  +LL  Y             L   ARK+FD+ P                V
Sbjct: 169 LGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYV 228

Query: 92  RDSG-----------------SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R+                   +WNAMISGY + G   EA D    M   G+  D  T  S
Sbjct: 229 RNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTS 288

Query: 135 ILPVCARSDNILS----GLLIHLYIVKHGLE----FNLFVSNNLINMYAKFGMMRHALRV 186
           ++  C   +  +     G  +H YI++  +E    F L V+N LI  Y K+  M  A RV
Sbjct: 289 LISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRV 348

Query: 187 FDQMMERDVVSWNSIIAAY------EQSN------------------DPITAHGF----- 217
           FD+M  RD++SWN++++ Y      E++N                    +  +GF     
Sbjct: 349 FDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408

Query: 218 --FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M+  G++P         +  + L    N + +H  ++R G     +  GNA++ M
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLG-HDSGLSAGNALITM 467

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQG 334
           Y++ G++ SA +VF  +P  D +SWN +I   AQ+G   +AIE+F QMM+E  +I P++ 
Sbjct: 468 YSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKE--DILPDRI 525

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAM 388
           T+++IL A +H G +++G     R   + +C    +         L+D+  + G    A 
Sbjct: 526 TFLTILTACNHAGLIKEG-----RHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQ 580

Query: 389 SLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           S+   +P  +  P W A+++   IHG  +  +    ++L E +     T++ L    +  
Sbjct: 581 SVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLL-ELIPGQDGTYIILSNMYAAL 639

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           G   E  R   +M+E  G+K   K  GC
Sbjct: 640 GQWDEVARVRLLMRER-GVK---KEPGC 663


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/715 (37%), Positives = 387/715 (54%), Gaps = 75/715 (10%)

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
            A SL+  Y   G    +   FD +PV  RD+   NAMIS + ++  A  A+ +   +  
Sbjct: 91  AATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLA 150

Query: 123 EGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFN--LFVSNNLINMYAKF- 177
              S+ P   +  S+L    +  ++       L+   H L     L VSN LI +Y K  
Sbjct: 151 SDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCD 210

Query: 178 --GMMRHALRVFDQMMERDVVSW-------------------------------NSIIAA 204
             G+ R A +V D+M E+D ++W                               N++I+ 
Sbjct: 211 APGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISG 270

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG-FIMRRGWFM 263
           Y QS     A   F  M    I PD  T  SL S  A      + +SVHG FI  +  F+
Sbjct: 271 YVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFV 330

Query: 264 EDVI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG---------- 311
            +    + NA+V +Y+K G I  A  +F+ + +KDV+SWNT+++GY ++G          
Sbjct: 331 PEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFK 390

Query: 312 ---------------------LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
                                LA +A+++F  M    ++ P   TY   + A   +GAL+
Sbjct: 391 EMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS-EDVKPCDYTYAGAVAACGELGALK 449

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G ++HA +++            L+ MY +CG + DA  +F  +P   SV WNA+IS  G
Sbjct: 450 HGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALG 509

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG G +AL  F QM+ +G+ PD I+F+++LTAC+H+GLV +G +YF  M+ +FGI P  
Sbjct: 510 QHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGE 569

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            HY  ++DL GRAG +G A + I+ MP  P  +IW A+L  CRI+G+MELGA A+D+LF+
Sbjct: 570 DHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFK 629

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E+ G Y+L+SN Y+  G+W     VR L RDRG+KK PG S IEV NKV +F  G+ 
Sbjct: 630 MVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDT 689

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
            HP   ++Y  L  + AKM+ LGYVPD  F LQD+   EKE++L +HSERLA++FG++  
Sbjct: 690 KHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKL 749

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P  + + + KNL++CGDCH    F+S+   REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 750 PAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 150/556 (26%), Positives = 246/556 (44%), Gaps = 92/556 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRNLVD-----GKKIHCSV 54
           MIS + R    + AV  F     +   LRPD Y+F  +L A   + D       ++HC+V
Sbjct: 128 MISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAV 187

Query: 55  LKLGFEWDVFVAASLLHMYCRF---GLANVARKLFDDMPVRDSGSW-------------- 97
            KLG    + V+ +L+ +Y +    G+   ARK+ D+MP +D  +W              
Sbjct: 188 HKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVH 247

Query: 98  -----------------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
                            NAMISGY QSG   EA ++   M  + +  D  T  S+L  CA
Sbjct: 248 AARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACA 307

Query: 141 RSDNILSGLLIHLYIVKHGLEF----NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
            +   L G  +H   ++   +F     L V+N L+ +Y+K G +  A ++FD M  +DVV
Sbjct: 308 NAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVV 367

Query: 197 SWNSIIAAYEQSNDPITA-----------------------HG--------FFTTMQQAG 225
           SWN+I++ Y +S     A                       HG         F  M+   
Sbjct: 368 SWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSED 427

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P   T     +   +L   ++ + +H  +++ G F      GNA++ MYA+ G +  A
Sbjct: 428 VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCG-FEASNSAGNALLTMYARCGAVKDA 486

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF  +P  D +SWN +I+   Q+G   EA+E+F  M     I P++ ++++IL A +H
Sbjct: 487 RLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQM-VAQGIYPDRISFLTILTACNH 545

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            G +  G +    + ++   F +         L+D+ G+ GRI +A  L   +P   +  
Sbjct: 546 AGLVDDGFQYFESMERD---FGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHM 459
            W AI+S  G    GD  L  +       + P+H  T++ L    S +G   +  R   +
Sbjct: 603 IWEAILS--GCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKL 660

Query: 460 MQEEFGIKPHLKHYGC 475
           M++  G+K   K  GC
Sbjct: 661 MRDR-GVK---KEPGC 672


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/727 (35%), Positives = 401/727 (55%), Gaps = 72/727 (9%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           + H  +LK G + D +++A L+  Y  +   N A  +   +P     S++++I    ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              +++ +   M   G+  D   + ++  VCA      +G  IH      GL+ + FV  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVV-------------------------------- 196
           +L +MY + G M  A +VFD+M E+DVV                                
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 197 ---SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
              SWN I++ + +S     A   F  M   G  PD +T+ S+   V    +    R +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE--------------------GLP 293
           G+++++G   +  +I +A++DMY K G +     +F+                    GL 
Sbjct: 276 GYVIKQGLLKDKCVI-SAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 294 VK---------------DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            K               +V+SW ++I G AQNG   EA+E+F+ M+    + PN+ T  S
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNRVTIPS 393

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +LPA  ++ AL  G   H   ++  L  DV V + L+DMY KCGRI  +  +F  +P  +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN 453

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V WN++++ + +HG+  + ++ F  ++   ++PD I+F SLL+AC   GL  EG +YF+
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFN 513

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           MM EE+GIKP L+HY CMV+L GRAG L  A++ I+ +P  PD+ +WGALL +CR+  N+
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           +L  +A+ +LF ++ EN G YVLMSNIYA  G W  VD +R+     GLKK PG S I+V
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            NKV      +++HP+ ++I +++  ++ +M+  G+ P+  F LQDVEE E+E +L  HS
Sbjct: 634 KNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHS 693

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LA+ FG++++P  +P+Q+ KNLR+CGDCH   KFIS    REI +RD+NRFHHFKDGI
Sbjct: 694 EKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGI 753

Query: 699 CSCGDYW 705
           CSCGD+W
Sbjct: 754 CSCGDFW 760


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/672 (39%), Positives = 381/672 (56%), Gaps = 39/672 (5%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E D+F    +L  Y R      A KLFD MP +D  SWNAM+SGY Q+G   EA ++ ++
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK 164

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M       + I+   +L     +  +     +     +    + L   N L+  Y K  M
Sbjct: 165 M----PHRNSISWNGLLAAYVHNGRLKEARRL----FESQSNWELISWNCLMGGYVKRNM 216

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A ++FD+M  RDV+SWN++I+ Y Q  D   A   F    ++ I+ D+ T  ++ S 
Sbjct: 217 LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN---ESPIR-DVFTWTAMVSG 272

Query: 240 VAQ---LNDCR---------NSRSVHGFIMRRGWFMEDVIIG--------------NAVV 273
             Q   +++ R         N  S +  +     + + VI G              N ++
Sbjct: 273 YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMI 332

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
             Y + G I  A  +F+ +P +D +SW  +I+GYAQNG   EA+ +F  M+   E + N+
Sbjct: 333 TGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE-SSNR 391

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T+   L   + + AL  G ++H +V+K       FV   L+ MY KCG  D+A  +F  
Sbjct: 392 STFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEG 451

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +     V WN +I+ +  HG G +AL  F  M   GV+PD IT V +L+ACSHSGL+  G
Sbjct: 452 IEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRG 511

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
             YF+ M  ++ +KP  KHY CM+DL GRAG L  A N ++NMP  P A+ WGALLGA R
Sbjct: 512 TEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASR 571

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           IHGN ELG  A++ +F+++ +N G YVL+SN+YA  G+W  V ++RS  R+ G++K  G+
Sbjct: 572 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGY 631

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S +EV NK+  F  G+  HP+ ++IY  L  L  KM+  GYV     VL DVEE+EKEH+
Sbjct: 632 SWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM 691

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           L  HSE+LA+AFGI++ P   PI++ KNLRVC DCHN  K IS+I  R II+RDS+RFHH
Sbjct: 692 LKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHH 751

Query: 694 FKDGICSCGDYW 705
           F +GICSCGDYW
Sbjct: 752 FSEGICSCGDYW 763



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 219/460 (47%), Gaps = 50/460 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPD----FYTFPPVLKACRNLVDGKKIHCSVLK 56
           M+S Y + G + EA + F +    + +  +     Y     LK  R L + +        
Sbjct: 145 MLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQS------- 197

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W++     L+  Y +  +   AR+LFD MPVRD  SWN MISGY Q G+  +A  +
Sbjct: 198 ---NWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRL 254

Query: 117 LDEMRLEGVSMDPITVASI---------------LPVCAR--SDNILSGLLIHLYIVKHG 159
            +E  +  V      V+                 +PV      + +L+G + +  +V  G
Sbjct: 255 FNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAG 314

Query: 160 LEF------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             F      N+   N +I  Y + G +  A ++FD M +RD VSW +II+ Y Q+     
Sbjct: 315 ELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE 374

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M++ G   +  T     S  A +      + VHG +++ G F     +GNA++
Sbjct: 375 ALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAG-FETGCFVGNALL 433

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY K G  + A  VFEG+  KDV+SWNT+I GYA++G   +A+ +F+ M++   + P++
Sbjct: 434 GMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAG-VKPDE 492

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMS 389
            T V +L A SH G + +G +    + ++   ++V       TC++D+ G+ GR+++A +
Sbjct: 493 ITMVGVLSACSHSGLIDRGTEYFYSMDRD---YNVKPTSKHYTCMIDLLGRAGRLEEAEN 549

Query: 390 LFYQVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQM 425
           L   +P    +  W A++    IHG    G+KA     +M
Sbjct: 550 LMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKM 589



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 206/456 (45%), Gaps = 30/456 (6%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D+      +  + R G  + A ++F+ MP R S S+NAMISGY ++     A D+ D+M 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM- 103

Query: 122 LEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                 D  +   +L    R+  +     L  L   K  + +N  +S      YA+ G +
Sbjct: 104 ---PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSG-----YAQNGFV 155

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VF++M  R+ +SWN ++AAY  +     A   F +        +L++   L    
Sbjct: 156 DEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNW----ELISWNCLMGGY 211

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
            + N   ++R +   +  R     DVI  N ++  YA++G ++ A  +F   P++DV +W
Sbjct: 212 VKRNMLGDARQLFDRMPVR-----DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +++GY QNG+  EA + F  M   NEI     +Y ++L  Y       + + I   + 
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVKNEI-----SYNAMLAGYVQY----KKMVIAGELF 317

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           +   C ++     ++  YG+ G I  A  LF  +P+   V W AIIS +  +G  ++ALN
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M  +G   +  TF   L+ C+    +  G++  H    + G +        ++ ++
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQ-VHGQVVKAGFETGCFVGNALLGMY 436

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            + G    A++  + +  + D   W  ++     HG
Sbjct: 437 FKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARHG 471



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 17/352 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+S YV+ G + EA   F +  + + +  +       ++  + ++ G+       +    
Sbjct: 269 MVSGYVQNGMVDEARKYFDEMPVKNEISYN-AMLAGYVQYKKMVIAGELFEAMPCRNISS 327

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+  +       Y + G    ARKLFD MP RD  SW A+ISGY Q+G+  EAL++  EM
Sbjct: 328 WNTMITG-----YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + +G S +  T +  L  CA    +  G  +H  +VK G E   FV N L+ MY K G  
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VF+ + E+DVVSWN++IA Y +      A   F +M++AG++PD +T+V + S  
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK-DVI 298
           +  +   +  + + + M R + ++        ++D+  + G +  A  +   +P      
Sbjct: 503 SH-SGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561

Query: 299 SWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           SW  L+     +G   L  +A E+   ME       N G YV +   Y+  G
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEP-----QNSGMYVLLSNLYAASG 608



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 172/389 (44%), Gaps = 68/389 (17%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I+ + + G    ALRVF+ M  R  VS+N++I+ Y ++     A   F  M +    
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPE---- 105

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                                                D+   N ++  Y +   +  A  
Sbjct: 106 ------------------------------------RDLFSWNVMLTGYVRNRRLGEAHK 129

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ +P KDV+SWN +++GYAQNG   EA EVF  M   N I+ N      +L AY H G
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWN-----GLLAAYVHNG 184

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            L++      R+ ++   +++    CL+  Y K   + DA  LF ++P    + WN +IS
Sbjct: 185 RLKEA----RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +   G   +A    +++ +E    D  T+ ++++    +G+V E ++YF    +E  +K
Sbjct: 241 GYAQVGDLSQA----KRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYF----DEMPVK 292

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
             +  Y  M+  + +   + +A    + MP R + S W  +     I G  + G +A  R
Sbjct: 293 NEIS-YNAMLAGYVQYKKMVIAGELFEAMPCR-NISSWNTM-----ITGYGQNGGIAQAR 345

Query: 528 -LFEVDSEN--VGYYVLMSNIYANVGKWE 553
            LF++  +   V +  ++S  YA  G +E
Sbjct: 346 KLFDMMPQRDCVSWAAIISG-YAQNGHYE 373


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/684 (37%), Positives = 396/684 (57%), Gaps = 6/684 (0%)

Query: 26  GLRPDFYTFPPVLK--ACRNLVDG-KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G   + + F  +LK     +L D    +H  V KLG + D FV  +L+  Y   G  + A
Sbjct: 99  GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAA 158

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R++FD +  +D  SW  M++ Y ++    ++L +  +MR+ G   +  T+++ L  C   
Sbjct: 159 RQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGL 218

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           +    G  +H   +K   + +L+V   L+ +Y K G +  A + F++M + D++ W+ +I
Sbjct: 219 EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           + Y QS+    A   F  M+Q+ +  P+  T  S+    A L        +H  +++ G 
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVG- 337

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              +V + NA++D+YAK G I ++  +F G   K+ ++WNT+I GY Q G   +A+ +F 
Sbjct: 338 LDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFS 397

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M    +I P + TY S+L A + + AL  G +IH+  IK     D  VA  L+DMY KC
Sbjct: 398 NMLGL-DIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKC 456

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GRIDDA   F ++ +   V WNA+I  + IHG G +ALN F  M     +P+ +TFV +L
Sbjct: 457 GRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVL 516

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +ACS++GL+ +G+ +F  M +++GI+P ++HY CMV L GR+G    A   I  +P +P 
Sbjct: 517 SACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPS 576

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +W ALLGAC IH N++LG V + R+ E++ ++   +VL+SN+YA   +W+ V  VR  
Sbjct: 577 VMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKN 636

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            + + +KK PG S +E    V  F  G+ +HP  + I+  L  L  K +  GYVPD S V
Sbjct: 637 MKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVV 696

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DVE+DEKE +L  HSERLA+AFG+I  P    I+I KNLR+C DCH   K +S+I +R
Sbjct: 697 LLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQR 756

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI++RD NRFHHF+ G+CSCGDYW
Sbjct: 757 EIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 243/470 (51%), Gaps = 3/470 (0%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +HC +LK G   D+F    LL+ Y  FG    A KLFD+MP+ ++ S+  +  G+ +
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           S     A  +L  +  EG  ++     ++L +    D   + L +H Y+ K G + + FV
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
              LI+ Y+  G +  A +VFD +  +D+VSW  ++A Y ++     +   F  M+  G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P+  T+ +       L   +  +SVHG  ++   +  D+ +G A++++Y K G I  A 
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC-YDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             FE +P  D+I W+ +I+ YAQ+  + EA+E+F  M + + + PN  T+ S+L A + +
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             L  G +IH+ V+K  L  +VFV+  L+D+Y KCG I++++ LF      + V WN II
Sbjct: 321 VLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTII 380

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             +   G G+KALN F  ML   ++P  +T+ S+L A S S +  E  R  H +  +   
Sbjct: 381 VGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRA-SASLVALEPGRQIHSLTIKTMY 439

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                    ++D++ + G +  A      M  + + S W AL+    IHG
Sbjct: 440 NKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVS-WNALICGYSIHG 488



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 185/361 (51%), Gaps = 4/361 (1%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           MD  + A++L    R+ +  +G  +H +I+KHG   +LF  N L+N Y  FG +  A ++
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD+M   + VS+ ++   + +S+    A      + + G + +     +L  ++  ++  
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
               SVH ++ + G    D  +G A++D Y+  G +++A  VF+G+  KD++SW  ++  
Sbjct: 121 DTCLSVHAYVYKLG-HQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVAC 179

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YA+N    +++ +F  M       PN  T  + L + + + A + G  +H   +K C   
Sbjct: 180 YAENYCHEDSLLLFCQMRIMG-YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           D++V   L+++Y K G I +A   F ++P+   +PW+ +IS +    +  +AL  F +M 
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 427 DEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
               V P++ TF S+L AC+   L++ G +  H    + G+  ++     ++D++ + G 
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGE 357

Query: 486 L 486
           +
Sbjct: 358 I 358



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 3/241 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y +  +  EA++ F +   +S + P+ +TF  VL+AC +LV    G +IH  VLK+
Sbjct: 277 MISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV 336

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +VFV+ +L+ +Y + G    + KLF     ++  +WN +I GY Q G+  +AL++ 
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLF 396

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    +    +T +S+L   A    +  G  IH   +K     +  V+N+LI+MYAK 
Sbjct: 397 SNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKC 456

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A   FD+M ++D VSWN++I  Y      + A   F  MQQ+  +P+ LT V + 
Sbjct: 457 GRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVL 516

Query: 238 S 238
           S
Sbjct: 517 S 517



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEW 61
           YV+ G   +A++ F    L   ++P   T+  VL+A  +LV    G++IH   +K  +  
Sbjct: 383 YVQLGDGEKALNLFSNM-LGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNK 441

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D  VA SL+ MY + G  + AR  FD M  +D  SWNA+I GY   G  +EAL++ D M+
Sbjct: 442 DSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQ 501

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAKFGMM 180
                 + +T   +L  C+ +  +  G      +++ +G+E  +     ++ +  + G  
Sbjct: 502 QSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQF 561

Query: 181 RHALRVFDQM-MERDVVSWNSIIAA 204
             A+++  ++  +  V+ W +++ A
Sbjct: 562 DEAVKLIGEIPFQPSVMVWRALLGA 586


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/592 (39%), Positives = 359/592 (60%), Gaps = 3/592 (0%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L  LD +    ++  P    + +  CA+S N+     IH ++     E + F+ N+LI++
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A +VFD+M ++D+VSW S+IA Y Q++ P  A G    M +   +P+  T 
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL        D      +H   ++  W  EDV +G+A++DMYA+ G ++ A AVF+ L 
Sbjct: 156 ASLLKAAGAYADSGIGGQIHALAVKCDWH-EDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K+ +SWN LI+G+A+ G    A+ VF  M+  N       TY SI    + +GAL QG 
Sbjct: 215 SKNGVSWNALISGFARKGDGETALMVFAEMQR-NGFEATHFTYSSIFSGLAGIGALEQGK 273

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +HA ++K+      FV   ++DMY K G + DA  +F +V     V WN++++    +G
Sbjct: 274 WVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYG 333

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +A++ F +M   G+  + ITF+ +LTACSH GLV EG+ YF M++E + ++P ++HY
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHY 392

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             +VDL GRAG L  A  FI  MP+ P A++WGALL ACR+H N ++G  A+D +F++D 
Sbjct: 393 VTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDP 452

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G  VL+ NIYA+ G W+    VR + +  G+KK P  S +E+ N V +F   + THP
Sbjct: 453 DDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHP 512

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + E+IY     ++ K++  GYVPD  +VL  V+E E+E  L  HSE++A+AF +I  P  
Sbjct: 513 RAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAG 572

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + I+I KN+R+CGDCH+  K+IS++ EREI+VRD+NRFHHF +G CSCGDYW
Sbjct: 573 ATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 208/395 (52%), Gaps = 7/395 (1%)

Query: 23  LTSG-LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           L SG L P    +   + AC   +NL D +KIH  +    FE D F+  SL+H+YC+ G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
              A K+FD M  +D  SW ++I+GY Q+    EA+ +L  M       +  T AS+L  
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
                +   G  IH   VK     +++V + L++MYA+ G M  A  VFD++  ++ VSW
Sbjct: 162 AGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N++I+ + +  D  TA   F  MQ+ G +    T  S+ S +A +      + VH  +++
Sbjct: 222 NALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVK 281

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
               +    +GN ++DMYAK G +  A  VFE +  KD+++WN+++T +AQ GL  EA+ 
Sbjct: 282 SRQKLT-AFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            F+ M +   I  NQ T++ IL A SH G +++G      + +  L  ++     +VD+ 
Sbjct: 341 HFEEMRKSG-IYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLL 399

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           G+ G ++ A+   +++P   ++  W A+++   +H
Sbjct: 400 GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/564 (41%), Positives = 366/564 (64%), Gaps = 8/564 (1%)

Query: 148 GLLIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           G  +HL  ++ GL   + F ++ L++MY        A + FD++   + V   ++ + Y 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLT--SIVAQLNDCRNSRSVHGFIMRRGWFME 264
           ++N    +   F  +  +G    +    +L   S  A++ DC  + S+H  +++ G    
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTG-LDG 226

Query: 265 DVIIGNAVVDMYAKLGI--INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-Q 321
           D  + N ++D YAK G   + +A  VF+ +  KDV+SWN++I  YAQNG++++A+ ++ +
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
           M+     I  N  T  +IL A +H G ++ G  IH +V++  L  +V+V T +VDMY KC
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GR++ A   F ++   + + W+A+I+ +G+HG G +AL+ F +M   G  P++ITF+S+L
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSH+GL+ +G+ +++ M++ FGI+P ++HYGCMVDL GRAG L  A+  I+ M V+PD
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A+IWGALL ACRIH N+EL  +++ RLFE+D+ N GYYVL+SNIYA  G W+ V+ +R L
Sbjct: 466 AAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVL 525

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            + RG++K PG+SS+E+  +  +FY G+++HP++++IY  L  L  KM+  GYVP+   V
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D++E+EK   L  HSE+LAIAF +++S P S I + KNLRVC DCH   K I++I +R
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EIIVRD  RFHHFKDG CSCGDYW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 197/376 (52%), Gaps = 14/376 (3%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+++H   ++ G F  D F A++LLHMY        ARK FD++P  +     AM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFN 163
           ++     +L +  ++   G +      A+++   A +     G+   +H  +VK GL+ +
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 164 LFVSNNLINMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             V N +++ YAK G   +  A +VFD  ME+DVVSWNS+IA Y Q+     A G +  M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDT-MEKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 222 Q--QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
                 I+ + +TL ++    A     +  + +H  ++R G   E+V +G +VVDMY+K 
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMG-LEENVYVGTSVVDMYSKC 345

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G +  A   F+ +  K+++SW+ +ITGY  +G   EA+++F  M    + NPN  T++S+
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQ-NPNYITFISV 404

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-R 396
           L A SH G L +G +     +K     +  V    C+VD+ G+ G +D+A  L  ++  +
Sbjct: 405 LAACSHAGLLDKG-RYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVK 463

Query: 397 SSSVPWNAIISCHGIH 412
             +  W A++S   IH
Sbjct: 464 PDAAIWGALLSACRIH 479



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 113/210 (53%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSG-LRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI++Y + G  ++A+  + +    SG ++ +  T   +L AC +   +  GK IH  V++
Sbjct: 266 MIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVR 325

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G E +V+V  S++ MY + G   +ARK F  +  ++  SW+AMI+GY   G+  EALDI
Sbjct: 326 MGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDI 385

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYA 175
            +EM   G + + IT  S+L  C+ +  +  G   +  + K  G+E  +     ++++  
Sbjct: 386 FNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLG 445

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +  +M ++ D   W ++++A
Sbjct: 446 RAGCLDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/616 (39%), Positives = 373/616 (60%), Gaps = 16/616 (2%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNILSGLLIHLYI 155
           N +I   C+ GN  +AL +L          +P   T   ++   AR +++   L +H  +
Sbjct: 42  NHLIQSLCKQGNLKQALYLLSH------ESNPTQQTCELLILSAARRNSLSDALDVHQLL 95

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           V  G + + F++  LINM+++   + +A +VFD+  +R +  WN++  A   +       
Sbjct: 96  VDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVL 155

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC-----RNSRSVHGFIMRRGWFMEDVIIGN 270
             +  M   G+  D  T   L       ++C     +  + +H  I+R G +   V +  
Sbjct: 156 ELYPRMNMMGVSSDRFTYTYLLKACVA-SECLVSFLQKGKEIHAHILRHG-YGAHVHVMT 213

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEI 329
            ++DMYA+ G ++ A AVF+ +PVK+V+SW+ +I  YA+NG   EA+E+F +MM   ++ 
Sbjct: 214 TLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDS 273

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN  T VS+L A +   AL QG  IHA +++  L   + V + L+ MY +CG+++    
Sbjct: 274 VPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQL 333

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++ +   V WN++IS +G+HG G KA+  F +M+D G  P HI+F+S+L ACSH+GL
Sbjct: 334 IFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGL 393

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG++ F  M +E GI+P ++HY CMVDL GRA  L  A   I+++ + P   +WG+LL
Sbjct: 394 VEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLL 453

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACRIH ++EL   AS RLF+++  N G YVL+++IYA    W+ V  V+ L   R L+K
Sbjct: 454 GACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQK 513

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IEV  K+  F + +  +P+ E+++  L NL+ +MK  GY P    VL D++++E
Sbjct: 514 VPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEE 573

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE I+  HSE+LA+AFG+I++     I+I KNLR+C DCH+ TKFIS+  +REI+VRD N
Sbjct: 574 KERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLN 633

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHFKDG+CSCGDYW
Sbjct: 634 RFHHFKDGVCSCGDYW 649



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 210/388 (54%), Gaps = 16/388 (4%)

Query: 37  VLKACR--NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS 94
           +L A R  +L D   +H  ++  GF+ D F+A  L++M+      + ARK+FD    R  
Sbjct: 76  ILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTI 135

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS----GLL 150
             WNA+      +G   + L++   M + GVS D  T   +L  C  S+ ++S    G  
Sbjct: 136 YVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKE 195

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH +I++HG   ++ V   L++MYA+FG + +A  VFD+M  ++VVSW+++IA Y ++  
Sbjct: 196 IHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGK 255

Query: 211 PITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI- 267
           P  A   F  M        P+ +T+VS+    A        + +H +I+RRG  ++ ++ 
Sbjct: 256 PYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRG--LDSILP 313

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           + +A++ MYA+ G + S   +F+ +  KDV+ WN+LI+ Y  +G   +AI++F+ M + +
Sbjct: 314 VISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMID-H 372

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDD 386
             +P+  +++S+L A SH G + +G K+   ++K + +   V    C+VD+ G+  R+D+
Sbjct: 373 GFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDE 432

Query: 387 AMSLFYQVPRSSSVP--WNAIISCHGIH 412
           A  +   + R    P  W +++    IH
Sbjct: 433 AAKIIEDL-RIEPGPKVWGSLLGACRIH 459



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 151/296 (51%), Gaps = 10/296 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-------RNLVDGKKIHCSVLKLGFEW 61
           GR ++ ++ + +  +  G+  D +T+  +LKAC         L  GK+IH  +L+ G+  
Sbjct: 149 GRGNDVLELYPRMNMM-GVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGA 207

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            V V  +L+ MY RFG  + A  +FD+MPV++  SW+AMI+ Y ++G   EAL++  EM 
Sbjct: 208 HVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMM 267

Query: 122 LEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           L      P  +T+ S+L  CA    +  G LIH YI++ GL+  L V + LI MYA+ G 
Sbjct: 268 LNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGK 327

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +     +FD+M ++DVV WNS+I++Y        A   F  M   G  P  ++ +S+   
Sbjct: 328 LESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGA 387

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
            +        + +   +++       V     +VD+  +   ++ A  + E L ++
Sbjct: 388 CSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIE 443


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/753 (34%), Positives = 418/753 (55%), Gaps = 84/753 (11%)

Query: 32  YTFPPVLKACRNLVDGKKIHCSVLKLGF---------EWDVFVAASLLHMYCRFGLANVA 82
           + F P       L+D   ++C   +L +         E D     +++  YC  G   +A
Sbjct: 43  FGFQPRAHILNRLID---VYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLA 99

Query: 83  RKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           R +F+  PV  RD+  +NAMI+G+  + +   A+++  +M+ EG   D  T AS+L   A
Sbjct: 100 RGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA 159

Query: 141 R-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG----MMRHALRVFDQMMERDV 195
             +D+    +  H   +K G  +   VSN L+++Y+K      ++  A +VFD+++E+D 
Sbjct: 160 LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDE 219

Query: 196 VSWNSIIAAYEQS---------------NDPITAH----------GFFTT-------MQQ 223
            SW +++  Y ++               N  + A+          GF+         M  
Sbjct: 220 RSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +GI+ D  T  S+    A     +  + VH +++RR  F       N++V +Y K G  +
Sbjct: 280 SGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF--SFHFDNSLVSLYYKCGKFD 337

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN------------- 330
            A A+FE +P KD++SWN L++GY  +G   EA  +F+ M+E N ++             
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397

Query: 331 -----------------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
                            P    +   + + + +GA   G + HA+++K      +     
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNA 457

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY KCG +++A  +F  +P   SV WNA+I+  G HG G +A++ + +ML +G+RPD
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            IT +++LTACSH+GLV +G++YF  M+  + I P   HY  ++DL  R+G    A + I
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVI 577

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           +++P +P A IW ALL  CR+HGNMELG +A+D+LF +  E+ G Y+L+SN++A  G+WE
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWE 637

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V  VR L RDRG+KK    S IE+  +V  F   + +HP+ E +Y  L++L  +M+ LG
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLG 697

Query: 614 YVPDKSFVLQDVEED-EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           YVPD SFVL DVE D  KE +LT+HSE++A+AFG++  PP + I+IFKNLR CGDCHN+ 
Sbjct: 698 YVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFF 757

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +F+S + +R+II+RD  RFHHF++G CSCG++W
Sbjct: 758 RFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 240/521 (46%), Gaps = 84/521 (16%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKK----IHCSVLKLGFEWDVFVAASLLHMYCRFG---- 77
           G +PD +TF  VL     + D +K     H + LK G  +   V+ +L+ +Y +      
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSG---------------------NAV----- 111
           L + ARK+FD++  +D  SW  M++GY ++G                     NA+     
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262

Query: 112 ------EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
                 EAL+++  M   G+ +D  T  S++  CA +  +  G  +H Y+++   +F+  
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFH 321

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN---------------- 209
             N+L+++Y K G    A  +F++M  +D+VSWN++++ Y  S                 
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 210 --------DPITAHGF-------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
                     +  +GF       F+ M++ G +P            A L    N +  H 
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHA 441

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            +++ G F   +  GNA++ MYAK G++  A  VF  +P  D +SWN LI    Q+G  +
Sbjct: 442 QLLKIG-FDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGA 500

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH---ARVIKNCLCFDVFVA 371
           EA++V++ M +   I P++ T +++L A SH G + QG K       V +     D +  
Sbjct: 501 EAVDVYEEMLK-KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYAR 559

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
             L+D+  + G+  DA S+   +P + ++  W A++S   +HG  +  +    ++   G+
Sbjct: 560 --LIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--GL 615

Query: 431 RPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            P+H  T++ L    + +G   E  R   +M++  G+K  +
Sbjct: 616 IPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDR-GVKKEV 655



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 196/478 (41%), Gaps = 111/478 (23%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------ 192
           +H  I+  G +    + N LI++Y K   + +A ++FD++ E                  
Sbjct: 36  VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 193 ---------------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                          RD V +N++I  +  +ND  +A   F  M+  G +PD  T  S+ 
Sbjct: 96  ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155

Query: 238 SIVAQL-NDCRNSRSVHGFIMRRG-WFMEDVIIGNAVVDMYAKLG----IINSACAVFEG 291
           + +A + +D +     H   ++ G  ++  V   NA+V +Y+K      +++SA  VF+ 
Sbjct: 156 AGLALVADDEKQCVQFHAAALKSGAGYITSV--SNALVSVYSKCASSPSLLHSARKVFDE 213

Query: 292 LPVKDVISWNTLITGYAQN--------------------------------GLASEAIEV 319
           +  KD  SW T++TGY +N                                G   EA+E+
Sbjct: 214 ILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEM 273

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
            + M     I  ++ TY S++ A +  G L+ G ++HA V++    F       LV +Y 
Sbjct: 274 VRRMVSSG-IELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR-EDFSFHFDNSLVSLYY 331

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCH------------------------------ 409
           KCG+ D+A ++F ++P    V WNA++S +                              
Sbjct: 332 KCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISG 391

Query: 410 -GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
              +G G++ L  F  M  EG  P    F   + +C+  G    GQ+Y H    + G   
Sbjct: 392 LAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDS 450

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            L     ++ ++ + G +  A    + MP   D+  W AL+ A   HG+   GA A D
Sbjct: 451 SLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIAALGQHGH---GAEAVD 504



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 164/353 (46%), Gaps = 61/353 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK- 56
           MIS YV  G   EA++   +  ++SG+  D +T+P V++AC     L  GK++H  VL+ 
Sbjct: 257 MISGYVNRGFYQEALEMVRRM-VSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR 315

Query: 57  --LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
               F +D     SL+ +Y + G  + AR +F+ MP +D  SWNA++SGY  SG+  EA 
Sbjct: 316 EDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAK 371

Query: 115 DILDEMR--------------------LEGVSM---------DPITVA--SILPVCARSD 143
            I  EM+                     EG+ +         +P   A    +  CA   
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
              +G   H  ++K G + +L   N LI MYAK G++  A +VF  M   D VSWN++IA
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIA 491

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF- 262
           A  Q      A   +  M + GI+PD +TL+++      L  C ++  V      R +F 
Sbjct: 492 ALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV------LTACSHAGLVD---QGRKYFD 542

Query: 263 -MEDVIIGNAVVDMYAKL-------GIINSACAVFEGLPVKDVIS-WNTLITG 306
            ME V       D YA+L       G  + A +V E LP K     W  L++G
Sbjct: 543 SMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSG 595



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 87/391 (22%)

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           +R+VHG I+  G F     I N ++D+Y K   +N A  +F+ +   D I+  T+++GY 
Sbjct: 33  ARAVHGNIITFG-FQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYC 91

Query: 309 QNGLASEAIEVFQMMEEC---------------------NEIN-----------PNQGTY 336
            +G  + A  VF+    C                     + IN           P+  T+
Sbjct: 92  ASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTF 151

Query: 337 VSILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR----IDDAMSLF 391
            S+L   + V    +Q ++ HA  +K+   +   V+  LV +Y KC      +  A  +F
Sbjct: 152 ASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVF 211

Query: 392 YQVPRSSSVPW--------------------------------NAIISCHGIHGQGDKAL 419
            ++       W                                NA+IS +   G   +AL
Sbjct: 212 DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEAL 271

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY--FHMMQEEFGIKPHLKHY-GCM 476
              R+M+  G+  D  T+ S++ AC+ +GL+  G++   + + +E+F       H+   +
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----HFDNSL 326

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF--EVDSE 534
           V L+ + G    A    + MP + D   W ALL      G +  G +   +L   E+  +
Sbjct: 327 VSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS-----GYVSSGHIGEAKLIFKEMKEK 380

Query: 535 NV-GYYVLMSNIYANVGKWEGVDEVRSLARD 564
           N+  + +++S +  N    EG+     + R+
Sbjct: 381 NILSWMIMISGLAENGFGEEGLKLFSCMKRE 411


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 352/542 (64%), Gaps = 3/542 (0%)

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-Q 223
           F+ + L++ Y + G  + AL +FD++ ++D+VSWNS+I+ + +  D     G    M+ +
Sbjct: 74  FIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFE 133

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G++P+ +T++ + S  A + +    + +HG  ++ G  +E V + N+++++Y K G + 
Sbjct: 134 MGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLE-VKVVNSLINLYGKCGCLE 192

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           +AC +FEG+ V+ ++SWN+++  +   GLA + I  F MM     IN +Q T VS+L A 
Sbjct: 193 AACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAG-INSDQATVVSLLLAC 251

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
            ++G  +    +H  ++   L  ++ +AT L+D+Y K G + D+  +F  +    +V W 
Sbjct: 252 ENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWT 311

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           A++S + +HG+G +A+  F  M+ EGV PDH+TF  LL+ACSHSGLV EG+ YF +M E 
Sbjct: 312 AMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEF 371

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +G++  ++HY CMVDL GR+GHL  A+  I++MP+ P++ +WGAL+GACR+ GN+ELG  
Sbjct: 372 YGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKE 431

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
            ++RLF +D  +   Y+ +SN+Y+  G+W    +VR+L ++R L + PG S IE  NK+ 
Sbjct: 432 VAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIH 491

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
            F  G+++HP  E+IY++L  L  K + +G+     +VL DV+E+ KE ++  HSE+LAI
Sbjct: 492 CFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAI 551

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG++ +    P+ I KN+R+CGDCH + K IS I +R II+RD+ RFHHF +G+CSCGD
Sbjct: 552 AFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGD 611

Query: 704 YW 705
           YW
Sbjct: 612 YW 613



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 233/462 (50%), Gaps = 22/462 (4%)

Query: 22  TLTSGLRPDFYTFPPV----------LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH 71
           +  S L P F+ F  V          +  C ++   + +HC V+K       F+   L+ 
Sbjct: 22  SFASQLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVS 81

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPI 130
            Y   G    A +LFD++P +D  SWN++ISG+ +  +    L +L  MR E G+  + +
Sbjct: 82  SYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEV 141

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           TV  ++  CA    +  G  IH   VK G+   + V N+LIN+Y K G +  A  +F+ M
Sbjct: 142 TVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGM 201

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
             + +VSWNS++A +          G+F  M++AGI  D  T+VSL      L   + + 
Sbjct: 202 SVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAE 261

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           +VHG+I+  G    ++ I  A++D+YAKLG ++ +C VF G+   D ++W  +++ YA +
Sbjct: 262 AVHGYIL-NGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMH 320

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EAIE F++M     + P+  T+  +L A SH G + +G K + +++      ++ V
Sbjct: 321 GRGREAIEHFELMVR-EGVVPDHVTFTHLLSACSHSGLVEEG-KNYFKIMYEFYGVELRV 378

Query: 371 A--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM-- 425
              +C+VD+ G+ G ++DA  L   +P   +S  W A+I    + G  +       ++  
Sbjct: 379 EHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFS 438

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           LD     ++IT  ++ +A   +G   +  +   +M+E   I+
Sbjct: 439 LDPSDSRNYITLSNMYSA---AGQWRDASKVRALMKERVLIR 477



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 164/362 (45%), Gaps = 8/362 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + R   L   +   ++     GL+P+  T  PV+ AC  + +   GK IH   +K 
Sbjct: 110 LISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKS 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V V  SL+++Y + G    A  LF+ M V+   SWN+M++ +   G A + +   
Sbjct: 170 GMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYF 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR  G++ D  TV S+L  C           +H YI+  GL+ NL ++  L+++YAK 
Sbjct: 230 IMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKL 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + +VF  M+  D V+W +++++Y        A   F  M + G+ PD +T   L 
Sbjct: 290 GTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLL 349

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  +        ++    +         V   + +VD+  + G +N A  + + +P++ +
Sbjct: 350 SACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPN 409

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKI 355
              W  LI      G      EV    E    ++P+    Y+++   YS  G  R   K+
Sbjct: 410 SGVWGALIGACRVRGNIELGKEV---AERLFSLDPSDSRNYITLSNMYSAAGQWRDASKV 466

Query: 356 HA 357
            A
Sbjct: 467 RA 468


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 389/709 (54%), Gaps = 66/709 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           + F   SLL MY + G    AR +F  MP RD+ SW  M+ G  ++G   +A+    +M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG--- 178
            EG++     + ++L  CA ++    G  +H +++K GL   + V+N+++ MY K G   
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 179 ----------------------------MMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
                                        M  AL +F+ M ER +VSWN+IIA Y Q+  
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 211 PITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-------- 261
              A  FF+ M  A  ++PD  T+ S+ S  A L   +  + +H +I+R G         
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 262 -----------------FMEDVIIGN-------AVVDMYAKLGIINSACAVFEGLPVKDV 297
                             M+  ++ +       A+++ Y KLG    A  VF+ +  +DV
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  +I GY QNG   EA+E+F+ M       PN  T  ++L A + +  L  G +IH 
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGP-EPNSHTLAAVLSACASLAYLGYGKQIHC 454

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           R I++     V V+  ++ +Y + G +  A  +F Q+  R  +V W ++I     HG G+
Sbjct: 455 RAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGE 514

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +ML  GV+PD +T++ + +AC+H+G + +G+RY+  M  E GI P + HY CM
Sbjct: 515 QAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACM 574

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG L  AH FIQ MPV PD  +WG+LL ACR+  N +L  +A+++L  +D +N 
Sbjct: 575 VDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNS 634

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y  ++N+Y+  G+W     +  L +D+ +KK  G+S   V +KV +F   +  HP+ +
Sbjct: 635 GAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRD 694

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            I  +   +  ++K  G+VPD + VL DV+++ KE +L+ HSE+LAIAFG+IS+P K+ +
Sbjct: 695 AICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 754

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KNLRVC DCH   KFIS++ +REIIVRD+ RFHHF+DG CSC DYW
Sbjct: 755 RIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 201/504 (39%), Gaps = 111/504 (22%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR----HALRVFD 188
           A +L +   + N  +G  IH + VK GL  + ++ NNL++ YA+ G+ R     A R+FD
Sbjct: 29  ARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFD 88

Query: 189 ---------------------------------QMMERDVVSWNSIIAAYEQSNDPITAH 215
                                            QM ERD VSW  ++    ++     A 
Sbjct: 89  DIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAV 148

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M   G+ P    L ++ S  A        R VH F+++ G     V + N+V+ M
Sbjct: 149 KTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLG-LSSCVPVANSVLYM 207

Query: 276 YAKLGIINSACAVFEGLPV-------------------------------KDVISWNTLI 304
           Y K G   +A AVFE + V                               + ++SWN +I
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAII 267

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GY QNGL   A++ F  M   + + P++ T  S+L A +++  L+ G ++H+ +++  +
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGM 327

Query: 365 CFDVFVATCLVDMYGKCGRID---------------------------------DAMSLF 391
            +   +   L+  Y K G ++                                  A  +F
Sbjct: 328 PYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVF 387

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +     + W A+I  +  +GQ D+A+  FR M+  G  P+  T  ++L+AC+    + 
Sbjct: 388 DVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLG 447

Query: 452 EGQ----RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            G+    R    +QE+      +     ++ ++ R+G + +A      +  R +   W +
Sbjct: 448 YGKQIHCRAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTS 502

Query: 508 LLGACRIHGNMELGAVASDRLFEV 531
           ++ A   HG  E   V  + +  V
Sbjct: 503 MIVALAQHGLGEQAIVLFEEMLRV 526


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 389/671 (57%), Gaps = 35/671 (5%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI-LDEMRLE-GV 125
           SLL    R GL     +LF  +P RD+ S+NA+++G+ ++G    A    +  +R E GV
Sbjct: 82  SLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGV 141

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
               IT++ ++ V +   +   G  +H  I++ G     F  + L++MYAK G +  A R
Sbjct: 142 RPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARR 201

Query: 186 VFDQM-------------------------------MERDVVSWNSIIAAYEQSNDPITA 214
           VFD+M                                ERD ++W +++    Q+     A
Sbjct: 202 VFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEA 261

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M+  G+  D  T  S+ +    L      + +H +I R   + ++V +G+A+VD
Sbjct: 262 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT-CYEDNVFVGSALVD 320

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY+K   +  A AVF  +  K++ISW  +I GY QNG   EA+ VF  M+  + I P+  
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQR-DGIKPDDF 379

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T  S++ + +++ +L +G + H   + + L   V V+  LV +YGKCG I+DA  LF ++
Sbjct: 380 TLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                V W A++  +   G+  + ++ F +ML +GV+PD +TF+ +L+ACS SGLV +G+
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR 499

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            YFH MQ++  I P   HY CM+DL+ R+G L  A  FI+ MP  PDA  W  LL ACR+
Sbjct: 500 SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRL 559

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
            G+ME+G  A++ L ++D +N   YVL+ +++A+ G+W  V ++R   RDR +KK PG S
Sbjct: 560 RGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCS 619

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            I+  NKV IF   +++HP    IY++L+ L +KM   GY PD S VL DV + EK H+L
Sbjct: 620 WIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHML 679

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
           + HSE+LAIAFG+I  PP+ PI+I KNLRVC DCHN TKFIS+IT R+I+VRD+ RFH F
Sbjct: 680 SHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKF 739

Query: 695 KDGICSCGDYW 705
            +GICSCGD+W
Sbjct: 740 SNGICSCGDFW 750



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 204/428 (47%), Gaps = 44/428 (10%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +G+RP   T   V+     L D   G+++HC +L+LGF    F  + L+ MY + G    
Sbjct: 139 AGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGD 198

Query: 82  ARKLFDDM-------------------------------PVRDSGSWNAMISGYCQSGNA 110
           AR++FD+M                                 RDS +W  M++G  Q+G  
Sbjct: 199 ARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLE 258

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EALD+   MR EGV +D  T  SIL  C     +  G  IH YI +   E N+FV + L
Sbjct: 259 SEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSAL 318

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY+K   +R A  VF +MM ++++SW ++I  Y Q+     A   F+ MQ+ GI+PD 
Sbjct: 319 VDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDD 378

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL S+ S  A L         H   +  G     V + NA+V +Y K G I  A  +F+
Sbjct: 379 FTLGSVISSCANLASLEEGAQFHCLALVSG-LRPYVTVSNALVTLYGKCGSIEDAHRLFD 437

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +   D +SW  L+ GYAQ G A E I++F+ M     + P+  T++ +L A S  G + 
Sbjct: 438 EMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLS-KGVKPDGVTFIGVLSACSRSGLVD 496

Query: 351 QGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPR-SSSVPWNAI 405
           +G      + ++    D+       TC++D+Y + G +  A     Q+PR   +  W  +
Sbjct: 497 KGRSYFHSMQQD---HDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATL 553

Query: 406 ISCHGIHG 413
           +S   + G
Sbjct: 554 LSACRLRG 561



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 208/397 (52%), Gaps = 38/397 (9%)

Query: 147 SGLLIHLYIVKHGLE-FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           SGLL H   V   +   NL   N+L++  A+ G++R   R+F  + +RD VS+N+++A +
Sbjct: 59  SGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGF 118

Query: 206 EQSNDPITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            ++     A G +  +   +AG++P  +T+  +  + + L D    R VH  I+R G F 
Sbjct: 119 SRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLG-FG 177

Query: 264 EDVIIGNAVVDMYAKLG-------------------------------IINSACAVFEGL 292
                G+ +VDMYAK+G                               ++  A A+FE +
Sbjct: 178 AYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAI 237

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             +D I+W T++TG  QNGL SEA++VF+ M     +  +Q T+ SIL A   + AL +G
Sbjct: 238 EERDSITWTTMVTGLTQNGLESEALDVFRRM-RAEGVGIDQYTFGSILTACGALAALEEG 296

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IHA + + C   +VFV + LVDMY KC  +  A ++F ++   + + W A+I  +G +
Sbjct: 297 KQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN 356

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G++A+  F +M  +G++PD  T  S++++C++   + EG + FH +    G++P++  
Sbjct: 357 GCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTV 415

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
              +V L+G+ G +  AH     M      S W AL+
Sbjct: 416 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALV 451



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 173/366 (47%), Gaps = 17/366 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           M++   + G  SEA+D F +     G+  D YTF  +L AC  L    +GK+IH  + + 
Sbjct: 248 MVTGLTQNGLESEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 306

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +E +VFV ++L+ MY +     +A  +F  M  ++  SW AMI GY Q+G   EA+ + 
Sbjct: 307 CYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVF 366

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+ +G+  D  T+ S++  CA   ++  G   H   +  GL   + VSN L+ +Y K 
Sbjct: 367 SEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKC 426

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M   D VSW +++  Y Q          F  M   G++PD +T + + 
Sbjct: 427 GSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN----AVVDMYAKLGIINSACAVFEGLP 293
           S  ++       RS    + +      D++  +     ++D+Y++ G +  A    + +P
Sbjct: 487 SACSRSGLVDKGRSYFHSMQQD----HDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMP 542

Query: 294 -VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSHVGA 348
              D   W TL++     G         + + + +  NP     +  + A    ++ V  
Sbjct: 543 RCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAK 602

Query: 349 LRQGIK 354
           LR+G++
Sbjct: 603 LRRGMR 608


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 399/680 (58%), Gaps = 16/680 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  +   CR L   ++    V     + +VF   +L+  Y +     VA +LFD+MP  D
Sbjct: 49  FLLLYSKCRRLSAARR----VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPD 104

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S S+N +I+ Y + G+   A  +  EMR   + MD  T++ I+  C  +  ++  L  H 
Sbjct: 105 SVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQL--HA 162

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPI 212
             V  GL+  + V N LI  Y+K G ++ A R+F  + E RD VSWNS++ AY Q  +  
Sbjct: 163 LSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGS 222

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   +  M   G+  D+ TL S+ +    + D       H  +++ G+  ++  +G+ +
Sbjct: 223 KALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH-QNSHVGSGL 281

Query: 273 VDMYAKLGIINSAC-AVFEGLPVKDVISWNTLITGYA-QNGLASEAIEVFQMMEECNEIN 330
           +D+Y+K G     C  VF+ +   D++ WNT+I+GY+    L+ EA+E F+ ++      
Sbjct: 282 IDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGH-R 340

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           P+  + V ++ A S++ +  QG ++H   +K +     + V   L+ MY KCG + DA +
Sbjct: 341 PDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKT 400

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF  +P  ++V +N++I+ +  HG G ++L+ F++ML+ G  P +ITF+S+L AC+H+G 
Sbjct: 401 LFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGR 460

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G+ YF+MM+++FGI+P   H+ CM+DL GRAG L  A   I+ +P  P    W ALL
Sbjct: 461 VEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALL 520

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACRIHGN+EL   A++RL ++D  N   YV+++NIY++ G+ +    VR L RDRG+KK
Sbjct: 521 GACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKK 580

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL----QDV 625
            PG S IEVN ++ IF   +  HP  +KI + L  +  K+K +GY P+    L      V
Sbjct: 581 KPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRV 640

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            + E+E  L  HSE+LA++FG++S+    PI +FKNLR+C DCHN  K+IS++ +REI V
Sbjct: 641 WQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITV 700

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RDS+RFH FKDG CSCG YW
Sbjct: 701 RDSHRFHCFKDGQCSCGGYW 720



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 199/417 (47%), Gaps = 43/417 (10%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  C    ++ +G  +H   +K  +  + ++SN+ + +Y+K   +  A RVFD   + +V
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV--- 252
            S+N++I+AY + +    AH  F  M     QPD ++  +L +  A+  D + +  +   
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 253 --HGFIMRRGWFMEDVI---------------------------IGNAVVDMYAKLGIIN 283
               F+   G+ +  +I                           +GNA++  Y+K G + 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 284 SACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            A  +F  L   +D +SWN+++  Y Q+   S+A+E++  M     +  +  T  S+L A
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-TVRGLIVDIFTLASVLTA 249

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVPRSSSVP 401
           +++V  L  G++ HA++IK+    +  V + L+D+Y KCG  + D   +F ++     V 
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVL 309

Query: 402 WNAIISCHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN +IS + ++    D+AL  FRQ+   G RPD  + V +++ACS+    S+G R  H +
Sbjct: 310 WNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG-RQVHGL 368

Query: 461 QEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
             +  I  + +     ++ ++ + G+L  A      MP     S + +++     HG
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHG 424


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/593 (40%), Positives = 361/593 (60%), Gaps = 5/593 (0%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L +LD +    +  +    + +L  C     +  G  IH +I     E +L + N ++NM
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK G +  A  +FD+M  +D+VSW  +I+ Y QS     A   F  M   G QP+  TL
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL           + R +H F ++ G+ M +V +G++++DMYA+   +  A  +F  L 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDM-NVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            K+V+SWN LI G+A+ G     + +F QM+ +  E  P   TY S+  A +  G+L QG
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFE--PTHFTYSSVFTACASSGSLEQG 326

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA VIK+      ++   L+DMY K G I DA  +F ++ +   V WN+IIS +  H
Sbjct: 327 KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 386

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F QML   V+P+ ITF+S+LTACSHSGL+ EGQ YF +M++   I+  + H
Sbjct: 387 GLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAH 445

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           +  +VDL GRAG L  A+ FI+ MP++P A++WGALLG+CR+H NM+LG  A++++FE+D
Sbjct: 446 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELD 505

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
             + G +VL+SNIYA+ G+     +VR + ++ G+KK P  S +E+ N+V +F   + +H
Sbjct: 506 PHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSH 565

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P  E+I      ++ K+K +GYVPD S VL  + + ++E  L  HSE+LA+AF ++ +PP
Sbjct: 566 PMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPP 625

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              I+I KN+R+CGDCH+  KF S++  REIIVRD+NRFHHF  G+CSC DYW
Sbjct: 626 GLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 237/447 (53%), Gaps = 12/447 (2%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L P+   +  +L  C   R L  G+ IH  +    FE D+ +   +L+MY + G    A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            LFD MP +D  SW  +ISGY QSG A EAL +  +M   G   +  T++S+L       
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +   G  +H + +K+G + N+ V ++L++MYA++  MR A  +F+ +  ++VVSWN++IA
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + +  +       F  M + G +P   T  S+ +  A        + VH  +++ G   
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG-Q 339

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               IGN ++DMYAK G I  A  VF  L  +D++SWN++I+GYAQ+GL +EA+++F+ M
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 399

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +  ++ PN+ T++S+L A SH G L +G      + K+ +   V     +VD+ G+ GR
Sbjct: 400 LKA-KVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 458

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHITFVSL 440
           +++A     ++P + ++  W A++    +H   D  +    Q+  LD      H+   ++
Sbjct: 459 LNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 518

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIK 467
             +   +G +S+  +   MM+E  G+K
Sbjct: 519 YAS---AGRLSDAAKVRKMMKES-GVK 541


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/659 (37%), Positives = 378/659 (57%), Gaps = 37/659 (5%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A++LFD++P  D  + + +IS +   G   EA+ +   +R  G+        ++   C  
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S +      +H   ++ G+  + F+ N LI+ Y K   +  A RVFD ++ +DVVSW S+
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
            + Y     P      F  M   G++P+ +TL S+    ++L D ++ R++HGF +R G 
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG- 263

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY-------------- 307
            +E+V + +A+V +YA+   +  A  VF+ +P +DV+SWN ++T Y              
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFS 323

Query: 308 ---------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
                                 +NG   +A+E+ + M+      PNQ T  S LPA S +
Sbjct: 324 QMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLG-FKPNQITISSFLPACSIL 382

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +LR G ++H  V ++ L  D+   T LV MY KCG ++ + ++F  + R   V WN +I
Sbjct: 383 ESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMI 442

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             + +HG G + L  F  ML  G++P+ +TF  +L+ CSHS LV EG + F+ M  +  +
Sbjct: 443 IANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLV 502

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           +P   HY CMVD+F RAG L  A+ FIQ MP+ P AS WGALLGACR++ N+EL  ++++
Sbjct: 503 EPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISAN 562

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           +LFE++  N G YV + NI      W    E R L ++RG+ KTPG S ++V ++V  F 
Sbjct: 563 KLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFV 622

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G++ + + +KIY+ L  L  KMKS GY PD  +VLQD++++EK   L SHSE+LA+AFG
Sbjct: 623 VGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFG 682

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++   +S I++FKNLR+CGDCHN  K++S++    IIVRDS RFHHF++G CSC D W
Sbjct: 683 ILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 240/504 (47%), Gaps = 46/504 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           +IS +   G  +EA+   Y      G++P    F  V KAC    D    K++H   ++ 
Sbjct: 103 LISAFTTRGLPNEAIR-LYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRC 161

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D F+  +L+H Y +      AR++FDD+ V+D  SW +M S Y   G     L + 
Sbjct: 162 GMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVF 221

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GV  + +T++SILP C+   ++ SG  IH + V+HG+  N+FV + L+++YA+ 
Sbjct: 222 CEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARC 281

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT------------------ 219
             ++ A  VFD M  RDVVSWN ++ AY  + +       F+                  
Sbjct: 282 LSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVI 341

Query: 220 -----------------TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
                             MQ  G +P+ +T+ S     + L   R  + VH ++ R  W 
Sbjct: 342 GGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRH-WL 400

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           + D+    A+V MYAK G +N +  VF+ +  KDV++WNT+I   A +G   E + +F+ 
Sbjct: 401 IGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFES 460

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKC 381
           M + + I PN  T+  +L   SH   + +G++I   + ++ L   D     C+VD++ + 
Sbjct: 461 MLQ-SGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRA 519

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 439
           GR+ +A     ++P   ++  W A++    ++   + A     ++ +  + P++   +VS
Sbjct: 520 GRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFE--IEPNNPGNYVS 577

Query: 440 LLTACSHSGLVSEGQRYFHMMQEE 463
           L      + L SE      +M+E 
Sbjct: 578 LFNILVTAKLWSEASEARILMKER 601



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 45/466 (9%)

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           L+      G  R A ++FD + + D  + +++I+A+     P  A   + +++  GI+P 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
               +++        D    + VH   +R G  M D  +GNA++  Y K   +  A  VF
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCG-MMSDAFLGNALIHAYGKCKCVEGARRVF 190

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           + L VKDV+SW ++ + Y   GL    + VF  M   N + PN  T  SILPA S +  L
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEM-GWNGVKPNSVTLSSILPACSELKDL 249

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
           + G  IH   +++ +  +VFV + LV +Y +C  +  A  +F  +P    V WN +++ +
Sbjct: 250 KSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAY 309

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
             + + DK L  F QM  +GV  D  T+ +++  C  +G   +       MQ   G KP+
Sbjct: 310 FTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQ-NLGFKPN 368

Query: 470 ---------------------------LKHY--------GCMVDLFGRAGHLGMAHNFIQ 494
                                       +H+          +V ++ + G L ++ N + 
Sbjct: 369 QITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRN-VF 427

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKW 552
           +M  R D   W  ++ A  +HGN     +  + + +  +   +V +  ++S    +    
Sbjct: 428 DMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVE 487

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           EG+    S+ RD  ++      +      VD+F    R H  YE I
Sbjct: 488 EGLQIFNSMGRDHLVEPDANHYAC----MVDVFSRAGRLHEAYEFI 529



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 3/244 (1%)

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G  ++     +G    A  +F+ +P  D  + +TLI+ +   GL +EAI ++  +    
Sbjct: 68  LGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASL-RAR 126

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I P+   ++++  A    G   +  ++H   I+  +  D F+   L+  YGKC  ++ A
Sbjct: 127 GIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGA 186

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F  +     V W ++ SC+   G     L  F +M   GV+P+ +T  S+L ACS  
Sbjct: 187 RRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSEL 246

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             +  G R  H      G+  ++     +V L+ R   +  A      MP R D   W  
Sbjct: 247 KDLKSG-RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR-DVVSWNG 304

Query: 508 LLGA 511
           +L A
Sbjct: 305 VLTA 308


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 372/636 (58%), Gaps = 26/636 (4%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S +W  +I  Y   G    +L   + +R  G+S D     S+L       +      +H 
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 154 YIVKHGLEFNLFVSNNLINMYAKF----------GMMRH------------ALRVFDQMM 191
            +++ G  F+L+ +N L+NMY+KF             RH              ++FD+M 
Sbjct: 101 AVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMP 160

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            RDVVSWN++IA   Q+     A      M +  ++PD  TL S+  I  +  +    + 
Sbjct: 161 VRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE 220

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG+ +R G F +DV IG++++DMYAK   +  +   F  L  +D ISWN++I G  QNG
Sbjct: 221 IHGYAIRHG-FDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              + +  F+ M +  ++ P Q ++ S++PA +H+ AL  G ++HA +I+     + F+A
Sbjct: 280 RFDQGLGFFRRMLK-EKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           + L+DMY KCG I  A  +F ++       V W AII    +HG    A++ F +ML +G
Sbjct: 339 SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDG 398

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V+P ++ F+++LTACSH+GLV EG +YF+ MQ +FG+ P L+HY  + DL GRAG L  A
Sbjct: 399 VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEA 458

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
           ++FI NM   P  S+W  LL ACR H N+EL     +++  VD  N+G +V+MSNIY+  
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAA 518

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
            +W    ++R   R  GLKKTP  S IEV NKV  F  G+++HP Y+KI + L  L  +M
Sbjct: 519 QRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQM 578

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GYV D + VL DV+E+ K  +L +HSERLAIAFGIIS+   + I++ KN+RVC DCH
Sbjct: 579 EKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCH 638

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              KF+++I  REIIVRD++RFHHFK+G CSCGDYW
Sbjct: 639 TAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 241/479 (50%), Gaps = 44/479 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y   G L  ++  F     + G+ PD + FP +L+A    ++    + +H +V++L
Sbjct: 47  IIKCYASHGLLRHSLASF-NLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRL 105

Query: 58  GFEWDVFVAASLLHMYCRFG----------------------LANVARKLFDDMPVRDSG 95
           GF +D++ A +L++MY +F                         +  RKLFD MPVRD  
Sbjct: 106 GFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVV 165

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           SWN +I+G  Q+G   EAL+++ EM  E +  D  T++SILP+     N+  G  IH Y 
Sbjct: 166 SWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYA 225

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           ++HG + ++F+ ++LI+MYAK   +  ++  F  +  RD +SWNSIIA   Q+       
Sbjct: 226 IRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGL 285

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
           GFF  M +  ++P  ++  S+    A L      + +H +I+R G F ++  I ++++DM
Sbjct: 286 GFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLG-FDDNKFIASSLLDM 344

Query: 276 YAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           YAK G I  A  +F  + +  +D++SW  +I G A +G A +A+ +F+ M   + + P  
Sbjct: 345 YAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM-LVDGVKPCY 403

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA------TCLVDMYGKCGRIDDA 387
             ++++L A SH G + +G K       N +  D  VA        + D+ G+ GR+++A
Sbjct: 404 VAFMAVLTACSHAGLVDEGWKYF-----NSMQRDFGVAPGLEHYAAVADLLGRAGRLEEA 458

Query: 388 MSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTA 443
                 +    +   W+ +++    H   + A     ++L  D G    H+   ++ +A
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSA 517



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 34/357 (9%)

Query: 27  LRPDFYTFP---PVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           LRPD +T     P+     N+  GK+IH   ++ GF+ DVF+ +SL+ MY +     ++ 
Sbjct: 195 LRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSV 254

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
             F  +  RD+ SWN++I+G  Q+G   + L     M  E V    ++ +S++P CA   
Sbjct: 255 CAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLT 314

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD--QMMERDVVSWNSI 201
            +  G  +H YI++ G + N F++++L++MYAK G ++ A  +F+  +M +RD+VSW +I
Sbjct: 315 ALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAI 374

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I         + A   F  M   G++P         + +A L  C      H  ++  GW
Sbjct: 375 IMGCAMHGHALDAVSLFEEMLVDGVKP------CYVAFMAVLTACS-----HAGLVDEGW 423

Query: 262 -----FMEDVIIG------NAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQ 309
                   D  +        AV D+  + G +  A      +  +   S W+TL+     
Sbjct: 424 KYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR- 482

Query: 310 NGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
              A + IE+ + ++ +   ++P N G +V +   YS     R   K+  R+ K  L
Sbjct: 483 ---AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGL 536


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/699 (37%), Positives = 389/699 (55%), Gaps = 16/699 (2%)

Query: 13   EAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEW-DVFVAAS 68
            + V+ F+   L +G+ P+  +F  +L AC N   L  G+KIH  +L    ++ +  VA  
Sbjct: 420  KVVNTFHHMLL-AGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATM 478

Query: 69   LLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            L+ MY + G  + A  +F +MP+  R   +WN M+  Y Q+  + EA   L EM   GV 
Sbjct: 479  LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 127  MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
             D ++  S+L  C  S       ++ + I++ G   +  +   LI+M+ +   +  A  V
Sbjct: 539  PDALSFTSVLSSCYCSQE---AQVLRMCILESGYR-SACLETALISMHGRCRELEQARSV 594

Query: 187  FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
            F++M   DVVSW ++++A  ++ D    H  F  MQ  G+ PD  TL +           
Sbjct: 595  FNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTL 654

Query: 247  RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
               + +H  +   G    D+ + NA+++MY+  G    A + FE +  +D++SWN +   
Sbjct: 655  GLGKVIHACVTEIG-LEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713

Query: 307  YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            YAQ GLA EA+ +F+ M+    + P++ T+ + L        +  G   HA   ++ L  
Sbjct: 714  YAQAGLAKEAVLLFRQMQ-LEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDS 772

Query: 367  DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            DV VAT LV +Y KCG++D+AMSLF      + V  NAII     HG  ++A+  F +M 
Sbjct: 773  DVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQ 832

Query: 427  DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             EGVRPD  T VS+++AC H+G+V EG   F  M+E FGI P L+HY C VDL GRAG L
Sbjct: 833  QEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQL 892

Query: 487  GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
              A   I+ MP   +  +W +LLG C++ G+ ELG   + R+ E+D  N   +V++SNIY
Sbjct: 893  EHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIY 952

Query: 547  ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
               GKW+  D  R    D  +K  PG S  E+  +V  F  G+R+HPK ++IY  L  L 
Sbjct: 953  CATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLE 1012

Query: 607  AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
              M+  GY  DK     DVE++ KE  L  HSER+AIAFG+I++PP++ ++I KNLRVCG
Sbjct: 1013 LLMRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCG 1069

Query: 667  DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            DCH  TK+IS +  REIIVRDS RFHHF +G CSC D W
Sbjct: 1070 DCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 179/598 (29%), Positives = 279/598 (46%), Gaps = 51/598 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS   +CG  + A   F    L S   P+ YT   +L AC   R+L  G+ IH  + +L
Sbjct: 97  LISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWEL 156

Query: 58  GFE----WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV-E 112
           G E        V  ++++MY + G    A  +F  +P +D  SW AM   Y Q      +
Sbjct: 157 GLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPD 216

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           AL I  EM L+ ++ + IT  + L  C    ++  G  +H  + +  L F+   SN LIN
Sbjct: 217 ALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALIN 273

Query: 173 MYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           MY K G    A  VF  M  R   D+VSWN++I+A  ++     A   F  ++  G++P+
Sbjct: 274 MYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 230 LLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
            +TL++ L ++ A   D   +R  HG I   G ++ DV+IGNA++ MYAK G  ++A AV
Sbjct: 334 SVTLITILNALAASGVDFGAARGFHGRIWESG-YLRDVVIGNAIISMYAKCGFFSAAWAV 392

Query: 289 FEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           F  +  K DVISWNT++          + +  F  M     I+PN+ ++++IL A S+  
Sbjct: 393 FRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG-IDPNKVSFIAILNACSNSE 451

Query: 348 ALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQ--VPRSSSVPWNA 404
           AL  G KIH+ ++     + +  VAT LV MYGKCG I +A  +F +  +P  S V WN 
Sbjct: 452 ALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNV 511

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL----------------------T 442
           ++  +  + +  +A     +ML  GV PD ++F S+L                      +
Sbjct: 512 MLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRS 571

Query: 443 ACSHSGLVSEGQRYFHMMQEE--FGIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           AC  + L+S   R   + Q    F    H  +  +  MV            HN  + M +
Sbjct: 572 ACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQL 631

Query: 499 R---PDASIWGALLGACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYANVGKW 552
               PD       L  C     + LG V    + E+  E ++     + N+Y+N G W
Sbjct: 632 EGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDW 689



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 196/386 (50%), Gaps = 12/386 (3%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           ++L  C  S+++  G   H  I   GLE +LF+ N LINMY + G +  A  +F +M ER
Sbjct: 30  ALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEER 89

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +VVSW ++I+A  Q      A   F TM  ++   P+  TLV++ +  A   D    RS+
Sbjct: 90  NVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSI 149

Query: 253 HGFIMRRGW---FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           H  I   G         ++GNA+++MYAK G +  A AVF  +P KDV+SW  +   YAQ
Sbjct: 150 HAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQ 209

Query: 310 N-GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
                 +A+ +F+ M     + PN  T+++ L A +   +LR G  +H+ + +  L FD 
Sbjct: 210 ERRFYPDALRIFREM-LLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFDP 265

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFRQM 425
             +  L++MYGKCG  + A S+F  +        V WNA+IS     G+   A+  FR++
Sbjct: 266 LASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRL 325

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
             EG+RP+ +T +++L A + SG+     R FH    E G    +     ++ ++ + G 
Sbjct: 326 RLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGF 385

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGA 511
              A    + +  + D   W  +LGA
Sbjct: 386 FSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 234/500 (46%), Gaps = 24/500 (4%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
            D   +  +L++C    +L  GK  H  +   G E  +F+   L++MY R G    A  +
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAI 82

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDN 144
           F  M  R+  SW A+IS   Q G    A  +   M LE  +  +  T+ ++L  CA S +
Sbjct: 83  FSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRD 142

Query: 145 ILSGLLIHLYIVKHGLE----FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +  G  IH  I + GLE        V N +INMYAK G +  A+ VF  + E+DVVSW +
Sbjct: 143 LAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTA 202

Query: 201 IIAAYEQSND--PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           +  AY Q     P  A   F  M    + P+++T ++       L   R+   +H  ++ 
Sbjct: 203 MAGAYAQERRFYP-DALRIFREMLLQPLAPNVITFITALGACTSL---RDGTWLHS-LLH 257

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASE 315
                 D +  NA+++MY K G    A +VF+ +  +   D++SWN +I+   + G   +
Sbjct: 258 EASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGD 317

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCL 374
           A+ +F+ +     + PN  T ++IL A +  G         H R+ ++    DV +   +
Sbjct: 318 AMAIFRRL-RLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAI 376

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           + MY KCG    A ++F ++  +   + WN ++          K +N F  ML  G+ P+
Sbjct: 377 ISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            ++F+++L ACS+S  +  G++   ++               +V ++G+ G +  A    
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVF 496

Query: 494 QNMPVRPDASI--WGALLGA 511
           + MP+ P  S+  W  +LGA
Sbjct: 497 KEMPL-PSRSLVTWNVMLGA 515



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 163/623 (26%), Positives = 276/623 (44%), Gaps = 78/623 (12%)

Query: 1   MISVYVRCGRLSEAVDCF-------------------------------YQFTLTSGLRP 29
           MI++Y +CG L +A+  F                               ++  L   L P
Sbjct: 172 MINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP 231

Query: 30  DFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           +  TF   L AC +L DG  +H  + +    +D   + +L++MY + G    A  +F  M
Sbjct: 232 NVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAM 291

Query: 90  PVR---DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD-NI 145
             R   D  SWNAMIS   ++G   +A+ I   +RLEG+  + +T+ +IL   A S  + 
Sbjct: 292 ASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDF 351

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAA 204
            +    H  I + G   ++ + N +I+MYAK G    A  VF ++  + DV+SWN+++ A
Sbjct: 352 GAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS------RSVHGFIMR 258
            E           F  M  AGI P+ +      S +A LN C NS      R +H  I+ 
Sbjct: 412 SEDRKSFGKVVNTFHHMLLAGIDPNKV------SFIAILNACSNSEALDFGRKIHSLILT 465

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEA 316
           R     +  +   +V MY K G I+ A  VF+ +P+  + +++WN ++  YAQN  + EA
Sbjct: 466 RRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEA 525

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC--- 373
                 M +   + P+  ++ S+L +              A+V++ C+    + + C   
Sbjct: 526 FGALMEMLQ-GGVLPDALSFTSVLSSCY--------CSQEAQVLRMCILESGYRSACLET 576

Query: 374 -LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+ M+G+C  ++ A S+F ++     V W A++S    +    +  N FR+M  EGV P
Sbjct: 577 ALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIP 636

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  T  + L  C  S  +  G +  H    E G++  +     +++++   G    A +F
Sbjct: 637 DKFTLATTLDTCLASTTLGLG-KVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSF 695

Query: 493 IQNMPVRPDASIWGALLGACRIHG----------NMELGAVASDRLFEVDSENV-GYYVL 541
            + M  R D   W  +  A    G           M+L  V  D+L    + NV G   L
Sbjct: 696 FETMKAR-DLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSAL 754

Query: 542 MSN--IYANVGKWEGVDEVRSLA 562
           +S+  ++  +    G+D   S+A
Sbjct: 755 VSDGKLFHALAAESGLDSDVSVA 777



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 18/219 (8%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y ++L +      L +G   H  +    L   +F+  CL++MY +CG +++A ++F ++ 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
             + V W A+IS +   G   +A   FR M L+    P+  T V++L AC++S  ++ G 
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG- 146

Query: 455 RYFHMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
           R  H M  E G++            M++++ + G L  A      +P + D   W A+  
Sbjct: 147 RSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEK-DVVSWTAM-- 203

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
                     GA A +R F  D+  +   +L+  +  NV
Sbjct: 204 ---------AGAYAQERRFYPDALRIFREMLLQPLAPNV 233


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 359/591 (60%), Gaps = 3/591 (0%)

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D LD +    ++  P    S++  CAR  ++     IH ++       ++F+ N+LI++Y
Sbjct: 50  DTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLY 109

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G +  A RVFD M  RD+ SW S+IA Y Q++ P  A G    M +   +P+  T  
Sbjct: 110 CKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFA 169

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           SL               +H   ++  W  +DV +G+A++DMYA+ G ++ A AVF+ L  
Sbjct: 170 SLLKAAGASASSGIGEQIHALTVKYDWH-DDVYVGSALLDMYARCGRMDMAIAVFDQLES 228

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K+ +SWN LI G+A+ G     + +F  M+  N       TY S+  A + +GAL QG  
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQR-NGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +HA +IK+      FV   ++DMY K G + DA  +F +V +   V WN++++    +G 
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A+  F +M   GV  + ITF+S+LTACSH GLV EG++YF MM+E + ++P + HY 
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYV 406

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
            +VDL GRAG L  A  FI  MP++P A++WGALLG+CR+H N ++G  A+D +FE+D +
Sbjct: 407 TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD 466

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G  VL+ NIYA+ G+W+    VR + +  G+KK P  S +E+ N V +F   + THP+
Sbjct: 467 DTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPR 526

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            E+IY +   ++ +++  GYVP+  +VL  V+E E++  L  HSE++A+AF +I+ P  +
Sbjct: 527 SEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGA 586

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I+I KN+R+CGDCH+  ++IS++ +REI+VRD+NRFHHF  G CSCGDYW
Sbjct: 587 TIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 212/383 (55%), Gaps = 6/383 (1%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  ++ AC   R+L D + IH  +    F   VF+  SL+H+YC+ G    AR++FD MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  SW ++I+GY Q+    EAL +L  M       +  T AS+L     S +   G  
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH   VK+    +++V + L++MYA+ G M  A+ VFDQ+  ++ VSWN++IA + +  D
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
             T    F  MQ+ G +    T  S+ S +A +      + VH  +++ G  +    +GN
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS-AFVGN 305

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK G +  A  VF+ +  KDV++WN+++T +AQ GL  EA+  F+ M +C  ++
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-VH 364

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            NQ T++SIL A SH G +++G +    + +  L  ++     +VD+ G+ G ++DA+  
Sbjct: 365 LNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVF 424

Query: 391 FYQVP-RSSSVPWNAIISCHGIH 412
            +++P + ++  W A++    +H
Sbjct: 425 IFKMPMKPTAAVWGALLGSCRMH 447


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/732 (36%), Positives = 402/732 (54%), Gaps = 78/732 (10%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSV-LKLGFEWDVFV 65
           RL EA+D  Y     S    +  ++  +L  C    ++V  K++   + L L    D F+
Sbjct: 6   RLREAIDALY-----SRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFL 60

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN---------------- 109
              LLH+Y + G  + AR LFD M  RD  SWNAM+S Y +SGN                
Sbjct: 61  QNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDA 120

Query: 110 ---------------AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
                          + +AL+    M+ EG      T  S+L  C++  +I  G  IH  
Sbjct: 121 VSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGR 180

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           IV   L  ++FV N L NMYAK G +  A  +FD+M+ ++VVSWNS+I+ Y Q+  P T 
Sbjct: 181 IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETC 240

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  MQ +G+ PD +T+ ++ S                                    
Sbjct: 241 TKLFCEMQSSGLMPDQVTISNILS------------------------------------ 264

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            Y + G I+ AC  F  +  KD + W T++ G AQNG   +A+ +F+ M   N + P+  
Sbjct: 265 AYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLEN-VRPDNF 323

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T  S++ + + + +L QG  +H + +   +  D+ V++ LVDMY KCG   DA  +F ++
Sbjct: 324 TISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRM 383

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
              + + WN++I  +  +G+  +AL  + +ML E ++PD+ITFV +L+AC H+GLV  GQ
Sbjct: 384 LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ 443

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            YF+ + +  G+ P   HY CM++L GRAG++  A + I++M   P+  IW  LL  CRI
Sbjct: 444 GYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRI 503

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           + ++  G +A+  LFE+D  N G Y+++SNIYA  G+W+ V  VRSL ++  +KK   +S
Sbjct: 504 NCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYS 563

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            IE++N+V  F   +RTH + E+IY+EL  L  K++  G+ PD + VL DV E+EK   +
Sbjct: 564 WIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSI 623

Query: 635 TSHSERLAIAFGIISSP-PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
             HSE+LA+AF +I  P  ++PI+I KN+RVCGDCH + KF+S+I  R II+RD NRFHH
Sbjct: 624 CYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHH 683

Query: 694 FKDGICSCGDYW 705
           F +G CSC D W
Sbjct: 684 FIEGRCSCKDSW 695


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/586 (40%), Positives = 362/586 (61%), Gaps = 5/586 (0%)

Query: 122 LEG--VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           LEG  +  D     ++L  C     ++ G ++H +I++     ++ + N L+NMYAK G 
Sbjct: 51  LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VF++M +RD V+W ++I+ Y Q + P  A  FF  M + G  P+  TL S+   
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A          +HGF ++ G F  +V +G+A++D+Y + G+++ A  VF+ L  ++ +S
Sbjct: 171 AAAERRGCCGHQLHGFCVKCG-FDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN LI G+A+     +A+E+FQ M   +   P+  +Y S+  A S  G L QG  +HA +
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLR-DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK+      F    L+DMY K G I DA  +F ++ +   V WN++++ +  HG G +A+
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAV 348

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
            +F +M   G+RP+ I+F+S+LTACSHSGL+ EG  Y+ +M+++ GI P   HY  +VDL
Sbjct: 349 WWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDL 407

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  A  FI+ MP+ P A+IW ALL ACR+H N ELGA A++ +FE+D ++ G +
Sbjct: 408 LGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPH 467

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           V++ NIYA+ G+W     VR   ++ G+KK P  S +E+ N + +F   +  HP+ E+I 
Sbjct: 468 VILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIA 527

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
            +   + AK+K LGYVPD S V+  V++ E+E  L  HSE++A+AF ++++PP S I I 
Sbjct: 528 RKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIK 587

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KN+RVCGDCH   K  S++  REIIVRD+NRFHHFKDG CSC DYW
Sbjct: 588 KNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 209/385 (54%), Gaps = 10/385 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +LK C   + L+ G+ +H  +L+  F  D+ +  +LL+MY + G    ARK+F+ MP
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  +W  +ISGY Q     +AL   ++M   G S +  T++S++   A       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H + VK G + N+ V + L+++Y ++G+M  A  VFD +  R+ VSWN++IA + + + 
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI--I 268
              A   F  M + G +P   +  SL    +        + VH ++++ G   E ++   
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG---EKLVAFA 299

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           GN ++DMYAK G I+ A  +F+ L  +DV+SWN+L+T YAQ+G   EA+  F+ M     
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG- 358

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           I PN+ +++S+L A SH G L +G   +  + K+ +  + +    +VD+ G+ G ++ A+
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 389 SLFYQVP-RSSSVPWNAIISCHGIH 412
               ++P   ++  W A+++   +H
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMH 443



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 189/378 (50%), Gaps = 38/378 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y +  R  +A+  F+   L  G  P+ +T   V+KA    R    G ++H   +K 
Sbjct: 132 LISGYSQHDRPCDAL-LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC 190

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V V ++LL +Y R+GL + A+ +FD +  R+  SWNA+I+G+ +     +AL++ 
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  +G      + AS+   C+ +  +  G  +H Y++K G +   F  N L++MYAK 
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++FD++ +RDVVSWNS++ AY Q      A  +F  M++ GI+P+ ++ +S+ 
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW-----FMEDVIIGNA-----VVDMYAKLGIINSACA 287
           +  +           H  ++  GW       +D I+  A     VVD+  + G +N A  
Sbjct: 371 TACS-----------HSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 288 VFEGLPVKDVIS-WNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQ-GTYVSILP 341
             E +P++   + W  L+     +    L + A E VF       E++P+  G +V +  
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVF-------ELDPDDPGPHVILYN 472

Query: 342 AYSHVGALRQGIKIHARV 359
            Y+  G      ++  ++
Sbjct: 473 IYASGGRWNDAARVRKKM 490


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/654 (37%), Positives = 379/654 (57%), Gaps = 6/654 (0%)

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +GF +D+ ++  L+ MY + G   VA  +FD M  R+  SW A++ G+ Q+GN +E+L +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M L GV  +  T ++ L  C   + +  G  IH   VK G +    V N++I+MY+K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  +F+ M  R+++SWN++IA Y  +     A   F  MQ+ G   D  T  S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
               + L   +    +H F++  G+    +  +  A++D+Y K G +  A  VF  +  K
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            VISW  LI GYAQ G  +E++E+F+ + E + I  +     S++  ++    ++QG ++
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRE-SSIQVDGFILSSMMGVFADFALVQQGKQM 299

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA  IK     D+ V   ++DMY KCG I++A  LF ++P  + + W  +I+ +G HG G
Sbjct: 300 HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLG 359

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +A+  F +M  +   PD +T++++L  CSHSGLV +GQ YF  +    GIK  ++HY C
Sbjct: 360 KEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYAC 419

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL GRAG L  A N + +MP+  +  IW  LL ACR+HG++ELG      L  +DSEN
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSEN 479

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV+MSNIYA+ G W+  + +R L + + LKK  G S +E++ +V  FY G+ THP  
Sbjct: 480 PVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLT 539

Query: 596 EKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS---SP 651
           EKI++ L+ +  +MK  LGYV    + L DVEE+ K   L  HSE+LAI   ++      
Sbjct: 540 EKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEE 599

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +  I++FKNLRVCGDCH + K +S+I     +VRD+NRFH F+DG+CSC DYW
Sbjct: 600 GRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 230/450 (51%), Gaps = 39/450 (8%)

Query: 1   MISVYVRCGRLSEAVDCF------------------------------YQFTLTSGLRPD 30
           +I +Y +CGRL  A D F                              +     SG++P+
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPN 72

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            +TF   LKAC     L  G++IH   +K GF+    V  S++ MY + G  N A  +F+
Sbjct: 73  DFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFE 132

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            MPVR+  SWNAMI+GY  +G   +AL +  +M+  G  +D  T  S L  C+    I  
Sbjct: 133 VMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKE 192

Query: 148 GLLIHLYIVKHGLEF--NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           G  IH +++  G  +  N  V+  LI++Y K G +  A RVF  + E+ V+SW ++I  Y
Sbjct: 193 GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGY 252

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q  +   +   F  ++++ IQ D   L S+  + A     +  + +H F ++    + D
Sbjct: 253 AQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGV-D 311

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           + + N+++DMY K G+IN A  +F  +P ++VISW  +ITGY ++GL  EAI +F  M +
Sbjct: 312 ISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEM-Q 370

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRI 384
            +   P+  TY+++L   SH G + +G +  +R+   + +   V    C+VD+ G+ GR+
Sbjct: 371 LDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRL 430

Query: 385 DDAMSLFYQVPRSSSVP-WNAIISCHGIHG 413
            +A +L   +P  ++V  W  ++S   +HG
Sbjct: 431 KEAKNLVDSMPLEANVGIWQTLLSACRVHG 460



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y + G L+E+++ F Q    S ++ D +    ++    +      GK++H   +K+
Sbjct: 248 LILGYAQEGNLAESMELFRQLR-ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKV 306

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D+ V  S+L MY + G+ N A +LF +MP R+  SW  MI+GY + G   EA+ + 
Sbjct: 307 PSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLF 366

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           DEM+L+    D +T  ++L  C+ S  +  G      +   HG++  +     ++++  +
Sbjct: 367 DEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGR 426

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND 210
            G ++ A  + D M +E +V  W ++++A     D
Sbjct: 427 AGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGD 461


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/693 (38%), Positives = 392/693 (56%), Gaps = 44/693 (6%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVRDSGSWNAMISG 103
           + IH  ++K G     +  + LL  +C     F     A  +FD +   +   WN M  G
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLE-FCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           +  S + V AL +   M   G+  D  T   +L  CA+S     G  IH +++K G + +
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 164 LFVSNNLINMYAKFGMMRHALRVFD-------------------------------QMME 192
           ++V  +LI+MYA+ G +  A +VFD                               ++  
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           +DVVSWN++I+ Y ++ +   A   F  M     ++PD  T+V++ S  AQ +     R 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH +I   G F  ++ I NA++D+Y+K G + +AC +F+GL  KDVISWNTLI GY    
Sbjct: 244 VHSWINDHG-FASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV---IKNCLCFDV 368
           L  EA+ +FQ M    E  PN  T +SILPA +H+GA+  G  IH  +   +K  +    
Sbjct: 303 LYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVS 361

Query: 369 FVATCLVDMYGKCGRIDDAMSLF-YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            + T L+DMY KCG ID A  +F   +   S   WNA+IS   +HG+ + A + F +M  
Sbjct: 362 SLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRM 421

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+ PD ITFV LL+ACSHSG++  G+  F  M   + I P L+HYGCM+DL G +G   
Sbjct: 422 NGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFK 481

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A   I  MP+ PD  IW +LL AC+IHGN+ELG   + +L +++  N G YVL+SNIYA
Sbjct: 482 EAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYA 541

Query: 548 NVGKWEGVDEVRSLARDRGL-KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
             G+W  V ++R+L  D+G+ KK PG SSIE+++ V  F  G++ HP+  +IY  L  + 
Sbjct: 542 AAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEME 601

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
             ++  G+VPD S VLQ++EE+ +E  L  HSE+LAIAFG+IS+ P + + I KNLRVC 
Sbjct: 602 VLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCK 661

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           +CH  TK IS+I +REII RD  RF HF+DG+C
Sbjct: 662 NCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 234/449 (52%), Gaps = 41/449 (9%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL PD YTFP +LK+C   +   +G++IH  VLKLGF+ D++V  SL+ MY 
Sbjct: 76  LYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYA 135

Query: 75  RFGLANVAR-------------------------------KLFDDMPVRDSGSWNAMISG 103
           + G    AR                               KLFD++P +D  SWNAMISG
Sbjct: 136 QNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISG 195

Query: 104 YCQSGNAVEALDILDE-MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           Y ++GN  EAL++  E M +  V  D  T+ +++  CA+SD+I  G  +H +I  HG   
Sbjct: 196 YVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFAS 255

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           NL + N LI++Y+KFG +  A  +FD +  +DV+SWN++I  Y   N    A   F  M 
Sbjct: 256 NLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEML 315

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLG 280
           ++G  P+ +T++S+    A L      R +H +I +  +G       +  +++DMYAK G
Sbjct: 316 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCG 375

Query: 281 IINSACAVFE-GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
            I++A  VF+  +  + + +WN +I+G+A +G A+ A ++F  M   N I P+  T+V +
Sbjct: 376 DIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM-RMNGIEPDDITFVGL 434

Query: 340 LPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RS 397
           L A SH G L  G  I   + +   +   +    C++D+ G  G   +A  +   +P   
Sbjct: 435 LSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEP 494

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQML 426
             V W +++    IHG  +   +F ++++
Sbjct: 495 DGVIWCSLLKACKIHGNLELGESFAKKLI 523



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 12/366 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS YV  G   EA++ F +  + + +RPD  T   V+ AC    ++  G+ +H  +   
Sbjct: 192 MISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDH 251

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ +Y +FG    A +LFD +  +D  SWN +I GY       EAL + 
Sbjct: 252 GFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLF 311

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNL-FVSNNLINMY 174
            EM   G + + +T+ SILP CA    I  G  IH+YI K   G+  N+  +  +LI+MY
Sbjct: 312 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMY 371

Query: 175 AKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           AK G +  A +VFD  M  R + +WN++I+ +        A   F+ M+  GI+PD +T 
Sbjct: 372 AKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITF 431

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           V L S  +        R++   + R       +     ++D+    G+   A  +   +P
Sbjct: 432 VGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 491

Query: 294 VK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQ 351
           ++ D + W +L+     +G   E  E F   ++  +I P N G+YV +   Y+  G   +
Sbjct: 492 MEPDGVIWCSLLKACKIHG-NLELGESFA--KKLIKIEPGNSGSYVLLSNIYAAAGRWNE 548

Query: 352 GIKIHA 357
             KI A
Sbjct: 549 VAKIRA 554


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/562 (42%), Positives = 369/562 (65%), Gaps = 10/562 (1%)

Query: 151 IHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           +HL  ++ GL   + + ++ L++MY        A R FD++ + + V   ++ + Y ++N
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNN 174

Query: 210 DPITAHGFFTTM---QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
               +   F  M     A +  +   LV+  S  A++ D   + S+H  I + G F  + 
Sbjct: 175 LVYHSLELFRAMIASDSASVVDEAAALVAF-SASARVPDRGVTASLHALIAKIG-FERNA 232

Query: 267 IIGNAVVDMYAKLGI--INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMM 323
            + N ++D YAK G   +  A  VF+ +  +DV+SWN++I  YAQNG+++EAI ++ +M+
Sbjct: 233 GVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKML 291

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                I  N     ++L A +H GA++ G +IH +V++  L  +V+V T +VDMY KCGR
Sbjct: 292 NVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGR 351

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++ A   F ++   + + W+A+I+ +G+HG+G +AL  F +M   G+RP++ITF+S+L A
Sbjct: 352 VEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAA 411

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH+GL+ EG+ +++ M++EFGI+  ++HYGCMVDL GRAG L  A++ I+ M V+PDA+
Sbjct: 412 CSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAA 471

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IWGALL ACRIH N+EL  ++  RLFE+D+ N GYYVL+SNIYA    W+ V+ +R L +
Sbjct: 472 IWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVK 531

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
            R ++K PG+SS E+  K+ +FY G+++HP++ +IY  L  L  +M+  GYVP+   VL 
Sbjct: 532 TRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLH 591

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           D++E+EKE  L  HSE+LA+AF +++S P+S I I KNLRVC DCH   KFI++ITEREI
Sbjct: 592 DLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREI 651

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           I+RD  RFHHFKDG+CSC DYW
Sbjct: 652 IIRDLQRFHHFKDGLCSCRDYW 673



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 190/374 (50%), Gaps = 14/374 (3%)

Query: 49  KIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           ++H   L+ G F  D + A++LLHMY        AR+ FD++P  +     AM SGY ++
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 108 GNAVEALDILDEMRLEGVS--MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
                +L++   M     +  +D           AR  +      +H  I K G E N  
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 166 VSNNLINMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           V N +++ YAK G   +  A +VFD  MERDVVSWNS+IA Y Q+     A G ++ M  
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFDT-MERDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 292

Query: 224 --AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
              GI+ + + L ++    A     +  + +H  ++R G   E+V +G ++VDMY+K G 
Sbjct: 293 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMG-LEENVYVGTSIVDMYSKCGR 351

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A   F  +  K+++SW+ +ITGY  +G   EA+E+F  M+    + PN  T++S+L 
Sbjct: 352 VEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG-LRPNYITFISVLA 410

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSS 398
           A SH G L +G +     +K     +  V    C+VD+ G+ G +D+A SL  ++  +  
Sbjct: 411 ACSHAGLLDEG-RYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 469

Query: 399 SVPWNAIISCHGIH 412
           +  W A++S   IH
Sbjct: 470 AAIWGALLSACRIH 483



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQ-FTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI++Y + G  +EA+  + +   +  G++ +      VL AC +   +  GK+IH  V++
Sbjct: 270 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR 329

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G E +V+V  S++ MY + G   +A + F  +  ++  SW+AMI+GY   G   EAL+I
Sbjct: 330 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 389

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYA 175
             EM+  G+  + IT  S+L  C+ +  +  G   +  + +  G+E  +     ++++  
Sbjct: 390 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLG 449

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +  +M ++ D   W ++++A
Sbjct: 450 RAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 419/736 (56%), Gaps = 53/736 (7%)

Query: 18   FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS-LLHMYCRF 76
            F  F+L+S   P    F        N  + + +H  ++K G    V +  + LL++Y + 
Sbjct: 278  FLGFSLSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGC---VGIRGNHLLNLYAKS 334

Query: 77   GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
                 A K+F+++P  D  SW  +ISG+ + G + + L +  +M+ +GV  +  T++ +L
Sbjct: 335  QNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVL 394

Query: 137  PVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
              C+ + N    G  IH +I+++GL+ +  ++N++++ Y K     +A ++F  M E+D 
Sbjct: 395  KSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDT 454

Query: 196  VSWNSIIAAYEQSNDPITAHGFFT-------------------------------TMQQA 224
            VSWN ++++Y Q  D   +   F                                 M  A
Sbjct: 455  VSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAA 514

Query: 225  GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            G   + LT      + + L+     + +H  +++ G  ++D  + N+++DMY K G +  
Sbjct: 515  GPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVG-VLDDGFVRNSLIDMYCKCGEMEK 573

Query: 285  ACAVFEGLP---------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            A  +F+ LP               V + +SW+++++GY QNG   +A++ F  M  C+++
Sbjct: 574  ASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMI-CSQV 632

Query: 330  NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
              ++ T  S++ A +  G L  G ++H  + K     DVF+ + ++DMY KCG ++DA  
Sbjct: 633  EVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWL 692

Query: 390  LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
            +F Q    + V W ++IS   +HGQG +A+  F  M++EG+ P+ ++FV +LTACSH+GL
Sbjct: 693  IFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGL 752

Query: 450  VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            + EG +YF +M+E +GI+P  +H+ CMVDL+GRAG L     FI N  +   +S+W + L
Sbjct: 753  LEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFL 812

Query: 510  GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             +CR+H N+E+G     +L E++  + G Y+L S+I A   +WE   ++RSL + RG+KK
Sbjct: 813  SSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKK 872

Query: 570  TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
             P  S I++ N+V  F  G+R+HP+  KIY  L  L  ++K +GY  D + V+QDVE+++
Sbjct: 873  NPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQ 932

Query: 630  KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
            ++ +L  HSE+LAIA+GIIS+ P +PI++ KNLRVC DCHN+ K+ S++  REII+RD +
Sbjct: 933  RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992

Query: 690  RFHHFKDGICSCGDYW 705
            RFHHFK G CSC DYW
Sbjct: 993  RFHHFKHGHCSCADYW 1008



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 255/526 (48%), Gaps = 67/526 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLK 56
           +IS + R G  ++ +  F +     G+ P+ +T   VLK+C + V+    GK IH  +L+
Sbjct: 358 LISGFARIGLSADVLGLFTKMQ-DQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILR 416

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG-------- 108
            G + D  +  S+L  Y +      A KLF  M  +D+ SWN M+S Y Q G        
Sbjct: 417 NGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDL 476

Query: 109 ---------------------NAVE--ALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
                                N  E  AL++L +M   G + + +T  SI  V A S ++
Sbjct: 477 FRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTF-SIALVLASSLSV 535

Query: 146 LS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER----------- 193
           L  G  IH  ++K G+  + FV N+LI+MY K G M  A  +F  + +            
Sbjct: 536 LGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595

Query: 194 ----DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
               + VSW+S+++ Y Q+     A   F+ M  + ++ D  TL S+ S  A        
Sbjct: 596 DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           R VHG+I + G  + DV +G++++DMY K G +N A  +F     ++V+ W ++I+G A 
Sbjct: 656 RQVHGYIQKIGHGL-DVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCAL 714

Query: 310 NGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           +G   EA+ +F++M   NE I PN+ ++V +L A SH G L +G K + R+++       
Sbjct: 715 HGQGREAVRLFELM--INEGITPNEVSFVGVLTACSHAGLLEEGCK-YFRLMREVYGIRP 771

Query: 369 FVA--TCLVDMYGKCGRIDDAMSLFYQ--VPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
                TC+VD+YG+ GR+++     +   + + SSV W + +S   +H   +  +   ++
Sbjct: 772 GAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSV-WRSFLSSCRVHKNIEMGIWVCKK 830

Query: 425 MLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           +L+  + P D   ++   + C+      E  +   +MQ+  G+K +
Sbjct: 831 LLE--LEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQR-GVKKN 873


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/665 (40%), Positives = 392/665 (58%), Gaps = 10/665 (1%)

Query: 47   GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G+ +H  +L+ G  +  + V+  L++MY + G    A K+F  M   D  SWN +IS   
Sbjct: 398  GRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALD 457

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            Q+GN  EA+     MR   +S     + S L  CA    + +G  +H   VK GL+ +  
Sbjct: 458  QNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTS 517

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA-HGFFTTMQQA 224
            VSN L+ MY + G M    +VF+ M E D VSWN+++     S  PI+     F  M + 
Sbjct: 518  VSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRG 577

Query: 225  GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            G+ P+ +T ++L + ++ L+     + VH  +M+ G  MED ++ NA++  YAK G + S
Sbjct: 578  GLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHG-VMEDNVVDNALISCYAKSGDMGS 636

Query: 285  ACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
               +F  +   +D ISWN++I+GY  NG   EA++   +M    +I  +  T+  IL A 
Sbjct: 637  CEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQI-MDCCTFSIILNAC 695

Query: 344  SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
            + V AL +G+++HA  I++ L  DV V + LVDMY KCGR+D A  LF  + + +   WN
Sbjct: 696  ASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWN 755

Query: 404  AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
            ++IS +  HG G KA+  F +ML     PDH+TFVS+L+ACSH+GLV  G  YF MM + 
Sbjct: 756  SMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDH 815

Query: 464  FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH---GNMEL 520
             GI P ++HY C++DL GRAG +     +IQ MP+ P+A IW  +L ACR      N++L
Sbjct: 816  -GILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDL 874

Query: 521  GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
            G  AS  L E++ +N   YVL SN +A  G WE   + R+  R    KK  G S + +N+
Sbjct: 875  GREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLND 934

Query: 581  KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
             V  F  G+R+HP  ++IY++L  L   +++ GYVP   + L D+EE+ KE +L+ HSE+
Sbjct: 935  GVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEK 994

Query: 641  LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
            LAIAF +++     PI+I KNLRVCGDCH   ++ISQ+  R+II+RDS RFHHFKDG CS
Sbjct: 995  LAIAF-VLTRSSSGPIRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCS 1053

Query: 701  CGDYW 705
            CGDYW
Sbjct: 1054 CGDYW 1058



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 143/544 (26%), Positives = 263/544 (48%), Gaps = 34/544 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQF--TLTSGLRPDFYTFPPVLKACRN-----LVDGKKIHCS 53
           ++S YV  G   EA   F      + +G RP  +TF  +L+AC++     L    ++H  
Sbjct: 133 LVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGL 192

Query: 54  VLKLGFEWDVFVAASLLHMY--CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
           V K  +  +  V  +L+ MY  C  G   +A+++FD  P+RD  +WNA++S Y + G+  
Sbjct: 193 VSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVA 252

Query: 112 EALDILDEMRL--EGVSMDPI--TVASILPVCARSDN---ILSGLLIHLYIVKHGLEFNL 164
               +  +M+     + + P   T  S++   + S     +L  +L+  +++K G   +L
Sbjct: 253 STFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLV--WVLKSGCSSDL 310

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT-TMQQ 223
           +V + L++ +A+ G+   A  +F  + +++ V+ N +I    + +    A   F  T   
Sbjct: 311 YVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT 370

Query: 224 AGIQPDLLTLVSLTSIVAQLN----DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
             +  D  T V L S +A+ +      R  R VHG ++R G     + + N +V+MYAK 
Sbjct: 371 VDVNAD--TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKC 428

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I SA  +F+ +   D ISWNT+I+   QNG   EA+  + +M + + I+P+    +S 
Sbjct: 429 GAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQ-SCISPSNFALISS 487

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L + + +  L  G ++H   +K  L  D  V+  LV MYG+CG + D   +F  +     
Sbjct: 488 LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 400 VPWNAIISCHGIHGQGDKALN----FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           V WN ++   G+       ++     F  M+  G+ P+ +TF++LL A S   ++  G++
Sbjct: 548 VSWNTMM---GVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQ 604

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
             H    + G+         ++  + ++G +G   +   NM  R DA  W +++     +
Sbjct: 605 -VHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYN 663

Query: 516 GNME 519
           GN++
Sbjct: 664 GNLQ 667



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 230/492 (46%), Gaps = 22/492 (4%)

Query: 36  PVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG 95
           P+L+   +    + +H  ++K G   D+F+   L++ Y +      A ++FD+MP R++ 
Sbjct: 69  PLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAV 128

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLE---GVSMDPITVASILPVCARS--DNILSGLL 150
           SW  ++SGY   G A EA  +   M  E   G      T  ++L  C     D +   + 
Sbjct: 129 SWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQ 188

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAK--FGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H  + K     N  V N LI+MY     G    A RVFD    RD+++WN++++ Y + 
Sbjct: 189 VHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKK 248

Query: 209 NDPITAHGFFTTMQQAG----IQPDLLTLVSL-TSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            D  +    F  MQ+      ++P   T  SL T+             V  ++++ G   
Sbjct: 249 GDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSG-CS 307

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ +G+A+V  +A+ G+ + A  +F  L  K+ ++ N LI G  +   + EA+++F  +
Sbjct: 308 SDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIF--V 365

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKI----HARVIKNCLC-FDVFVATCLVDMY 378
              N ++ N  TYV +L A +      +G++I    H  +++  L    + V+  LV+MY
Sbjct: 366 GTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMY 425

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG I+ A  +F  +  +  + WN IIS    +G  ++A+  +  M    + P +   +
Sbjct: 426 AKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALI 485

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S L++C+   L++ GQ+  H    ++G+         +V ++G  G +        +M  
Sbjct: 486 SSLSSCAGLKLLTAGQQ-VHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAE 544

Query: 499 RPDASIWGALLG 510
             + S W  ++G
Sbjct: 545 HDEVS-WNTMMG 555



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 195/412 (47%), Gaps = 38/412 (9%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A +LP+  R  +  S   +H+ ++K GL  +LF+ N+L+N YAK   +  A +VFD+M E
Sbjct: 65  ADLLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPE 124

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQ---QAGIQPDLLTLVSLTSIVAQLNDCRN- 248
           R+ VSW  +++ Y        A   F  M    QAG +P   T  +L      L  C++ 
Sbjct: 125 RNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTL------LRACQDG 178

Query: 249 -------SRSVHGFIMRRGWFMEDVIIGNAVVDMYAK--LGIINSACAVFEGLPVKDVIS 299
                  +  VHG + +   +  +  + NA++ MY    +G    A  VF+G P++D+I+
Sbjct: 179 GPDRLGFAVQVHGLVSKTE-YASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLIT 237

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECN---EINPNQGTYVSILPAYSHVGALRQGI-KI 355
           WN L++ YA+ G  +    +F+ M+  +   ++ P + T+ S++ A S        + ++
Sbjct: 238 WNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQV 297

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              V+K+    D++V + LV  + + G  D+A  +F  + + ++V  N +I         
Sbjct: 298 LVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFS 357

Query: 416 DKALNFF---RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-----YFHMMQEEFGIK 467
           ++A+  F   R  +D  V  D  T+V LL+A +   +  EG R     + HM++      
Sbjct: 358 EEAVKIFVGTRNTVD--VNAD--TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGL-TD 412

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +     +V+++ + G +  A    Q M    D   W  ++ A   +GN E
Sbjct: 413 LKIAVSNGLVNMYAKCGAIESASKIFQLMEA-TDRISWNTIISALDQNGNCE 463



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 111/214 (51%), Gaps = 5/214 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y+  G L EA+DC +   + SG   D  TF  +L AC +   L  G ++H   ++ 
Sbjct: 656 MISGYIYNGNLQEAMDCVW-LMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRS 714

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E DV V ++L+ MY + G  + A KLF+ M  R+  SWN+MISGY + G   +A++I 
Sbjct: 715 HLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIF 774

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM     S D +T  S+L  C+ +  +  GL     +  HG+   +   + +I++  + 
Sbjct: 775 EEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRA 834

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND 210
           G +        +M +E + + W +++ A  QS D
Sbjct: 835 GKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKD 868



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 7/180 (3%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           +  +LP     G       +H  +IK  L  D+F+   LV+ Y K  R+  A  +F ++P
Sbjct: 64  HADLLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMP 123

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE---GVRPDHITFVSLLTACSHSGLVSE 452
             ++V W  ++S + +HG  ++A   FR ML E   G RP   TF +LL AC   G    
Sbjct: 124 ERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRL 183

Query: 453 G-QRYFHMMQEEFGIKPHLKHYGCMVDLFGR--AGHLGMAHNFIQNMPVRPDASIWGALL 509
           G     H +  +     +      ++ ++G    G   +A       P+R D   W AL+
Sbjct: 184 GFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIR-DLITWNALM 242


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/720 (37%), Positives = 420/720 (58%), Gaps = 28/720 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL----VDGKKIHCSVLK 56
           M S   R G  +EA+  F + TL  GL P+ +T     +AC       + G  +   V K
Sbjct: 123 MASCLSRNGAEAEALRLFGE-TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 57  LGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           LGF W  DV V  +L+ M+ + G     R++FD +  R    W  +I+ Y QSG + EA+
Sbjct: 182 LGF-WGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           ++  +M   G   D  T++S+L  C    +   G  +H   ++ GLE +  VS  L++MY
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMY 300

Query: 175 AKF--GMMRHALR-VFDQMMERDVVSWNSIIAAY----EQSNDPITAHGFFTTMQQAGIQ 227
           AK   G   H  R VF++M + +V++W ++++ Y     Q N  +     F  M   GI+
Sbjct: 301 AKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMI---LFCKMLNEGIR 357

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGIINSAC 286
           P+ +T  S+    A L D  + R +H   ++    + D+ ++GNA+V MYA+ G I  A 
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSN--LADLNVVGNALVSMYAESGSIEEAR 415

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F+ L  K+++S++  + G  +    S   + +Q+  E  E+  +  T+ S++ A + V
Sbjct: 416 HAFDQLYEKNMVSFSGNLDGDGR----SNTYQDYQI--ERMELGISTFTFGSLISAAASV 469

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G L +G ++HA  +K     D  +   LV MY +CG + DA  +F ++   + + W ++I
Sbjct: 470 GMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMI 529

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S    HG   +AL  F  M+  GV+P+ +T++++L+ACSH+GLV EG+ +F MMQ+  G+
Sbjct: 530 SGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGL 589

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HY CMVDL GR+G +  A +FI  MP + DA +W  LLGAC+ H NM++G +A++
Sbjct: 590 IPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAAN 649

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            + +++ ++   YVL+SN+YA  G W+ V  +RSL RD+ L K  G S + V+N +  F 
Sbjct: 650 HVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFR 709

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+ E+IY +L  L  ++K +GYVPD S VL D+ ++ KE  L  HSE++A+AFG
Sbjct: 710 AGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFG 769

Query: 647 IIS-SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS +    PI+IFKNLRVC DCH+  K++S+ T REII+RDSNRFH  KDG CSCG+YW
Sbjct: 770 LISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 157/539 (29%), Positives = 251/539 (46%), Gaps = 33/539 (6%)

Query: 47  GKKIHCSVLKLG--FEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMIS 102
           G+ +   +L+ G   E D  VA SLL +Y +      AR +FD MPV  RD  SW AM S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI-LSGLLIHLYIVKHGL- 160
              ++G   EAL +  E   EG+  +  T+ +    C  S+   L+G  +   + K G  
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             ++ V   LI+M+AK G +    RVFD + ER VV W  +I  Y QS     A   F  
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL- 279
           M + G QPD  TL S+ S   +L   R  + +H   +R G    D  +   +VDMYAK  
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLG-LESDSCVSCGLVDMYAKSH 304

Query: 280 --GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF--QMMEECNEINPNQGT 335
               +++A  VF  +P  +V++W  L++GY Q G     + +   +M+ E   I PN  T
Sbjct: 305 NGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNE--GIRPNHIT 362

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y S+L A +++G    G +IH   +K+ L     V   LV MY + G I++A   F Q+ 
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLY 422

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
             + V ++  +      G+ +   ++  + ++ G+     TF SL++A +  G++++GQR
Sbjct: 423 EKNMVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAASVGMLTKGQR 477

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
             H +  + G          +V ++ R G+L  A      M      S W +++     H
Sbjct: 478 -LHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVIS-WTSMISGLAKH 535

Query: 516 GNMELGAVASDRLFE------VDSENVGYYVLMSNI-YANVGKWEGVDEVRSLARDRGL 567
           G     A  +  LF       V   +V Y  ++S   +A + K EG +  R + +  GL
Sbjct: 536 GY----AARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVK-EGKEHFRMMQKHHGL 589



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPW 402
           H+G   QG   H     + L  D  VA  L+ +Y KC  +  A S+F  +P      V W
Sbjct: 64  HLGRALQG---HLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSW 120

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            A+ SC   +G   +AL  F + L+EG+ P+  T  +   AC  S L          +  
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 463 EFGIKPHLKHYGC-MVDLFGRAGHL 486
           + G        GC ++D+F + G L
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDL 205


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/672 (37%), Positives = 386/672 (57%), Gaps = 37/672 (5%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+ +    G  N AR+LFD++P  D  + + +IS     G + EA+ I   ++  G+  D
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
                +    CA S + L    +H    + G+  ++FV N LI+ Y K   +  A RVFD
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            ++ RDVVSW S+ + Y +   P      F  M  +G++P+ +T+ S+    A+L D ++
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY- 307
            + +HGF +R G  + ++ + +A+V +YAK   +  A  VF+ +P +DV+SWN ++T Y 
Sbjct: 284 GKEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 308 ----------------------------------AQNGLASEAIEVFQMMEECNEINPNQ 333
                                              +NG + EA+E+F+ M++     PN+
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNE 401

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T  SILPA S    LR G +IH  V ++    D+   T L+ MY KCG ++ + ++F  
Sbjct: 402 ITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM 461

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           + R   V WN +I  + +HG G +AL  F +ML   V+P+ +TF  +L+ CSHS LV EG
Sbjct: 462 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG 521

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            + F+ M  +  ++P   HY C+VD++ RAG L  A+ FIQ MP+ P AS WGALL ACR
Sbjct: 522 VQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACR 581

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           ++ N+EL  +++ +LFE++  N G YV + NI      W    +VR L ++RG+ KTPG 
Sbjct: 582 VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGC 641

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S ++V NKV  F  G++++ + +KIY+ L  L  KMK  GY PD  +VLQD++++EK   
Sbjct: 642 SWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAES 701

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           L +HSE+LA+AFGI++   +S I++FKNLR+CGDCHN  K++S++    I+VRDS RFHH
Sbjct: 702 LCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHH 761

Query: 694 FKDGICSCGDYW 705
           FK+G CSC D W
Sbjct: 762 FKNGNCSCKDLW 773



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 250/504 (49%), Gaps = 46/504 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           +IS     G  +EA+   Y      G++PD   F    KAC    D    K++H    + 
Sbjct: 135 LISALTTHGLSNEAIK-IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRC 193

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +L+H Y +      AR++FDD+ VRD  SW ++ S Y + G   + +D+ 
Sbjct: 194 GVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVF 253

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GV  +P+TV+SILP CA   ++ SG  IH + V+HG+  NLFV + L+++YAK 
Sbjct: 254 REMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKC 313

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY--------------EQSNDPITAH-------- 215
             +R A  VFD M  RDVVSWN ++ AY              + S D + A         
Sbjct: 314 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 373

Query: 216 -------------GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
                          F  MQ+ G +P+ +T+ S+    +   + R  + +H ++ R  W 
Sbjct: 374 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRH-WK 432

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           + D+    A++ MYAK G +N +  VF+ +  KDV++WNT+I   A +G   EA+ +F  
Sbjct: 433 VGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDK 492

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKC 381
           M   + + PN  T+  +L   SH   + +G++I   + ++ L   D    +C+VD+Y + 
Sbjct: 493 M-LLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRA 551

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 439
           GR+++A      +P   ++  W A+++   ++   + A    +++ +  + P++   +VS
Sbjct: 552 GRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVS 609

Query: 440 LLTACSHSGLVSEGQRYFHMMQEE 463
           L      + + SE  +   +M+E 
Sbjct: 610 LFNILVTAKMWSEASQVRILMKER 633



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 3/244 (1%)

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G  ++ +   +G  N A  +F+ +P  D  + +TLI+    +GL++EAI+++  ++E  
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE-R 158

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I P+   +++   A +  G   +  ++H    +  +  DVFV   L+  YGKC  ++ A
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 218

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F  +     V W ++ SC+   G   K ++ FR+M   GV+P+ +T  S+L AC+  
Sbjct: 219 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 278

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             +  G+   H      G+  +L     +V L+ +   +  A      MP R D   W  
Sbjct: 279 KDLKSGKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNG 336

Query: 508 LLGA 511
           +L A
Sbjct: 337 VLTA 340


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/593 (40%), Positives = 362/593 (61%), Gaps = 6/593 (1%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L +LD +    +  +    + +L  C     +  G  IH +I     E +L + N ++NM
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK G +  A  +FD+M  +D+VSW  +I+ Y QS     A   F  M   G QP+  TL
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL           + R +H F ++ G+ M +V +G++++DMYA+   +  A  +F  L 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDM-NVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            K+V+SWN LI G+A+ G     + +F QM+ +  E  P   TY S+L A +  G+L QG
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFE--PTHFTYSSVL-ACASSGSLEQG 325

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA VIK+      ++   L+DMY K G I DA  +F ++ +   V WN+IIS +  H
Sbjct: 326 KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 385

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F QML   V+P+ ITF+S+LTACSHSGL+ EGQ YF +M++   I+  + H
Sbjct: 386 GLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAH 444

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           +  +VDL GRAG L  A+ FI+ MP++P A++WGALLGACR+H NM+LG  A++++FE+D
Sbjct: 445 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELD 504

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
             + G +VL+SNIYA+ G+     +VR + ++ G+KK P  S +E+ N+V +F   + +H
Sbjct: 505 PHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSH 564

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P  E+I      ++ K+K +GYVPD S VL  + + ++E  L  HSE+LA+AF ++ +PP
Sbjct: 565 PMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPP 624

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              I+I KN+R+CGDCH+  KF S++  REIIVRD+NRFHHF  G+CSC DYW
Sbjct: 625 GLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 237/447 (53%), Gaps = 13/447 (2%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L P+   +  +L  C   R L  G+ IH  +    FE D+ +   +L+MY + G    A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            LFD MP +D  SW  +ISGY QSG A EAL +  +M   G   +  T++S+L       
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           +   G  +H + +K+G + N+ V ++L++MYA++  MR A  +F+ +  ++VVSWN++IA
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + +  +       F  M + G +P   T  S+ +  A        + VH  +++ G   
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGG-Q 338

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               IGN ++DMYAK G I  A  VF  L  +D++SWN++I+GYAQ+GL +EA+++F+ M
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 398

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +  ++ PN+ T++S+L A SH G L +G      + K+ +   V     +VD+ G+ GR
Sbjct: 399 LKA-KVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 457

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHITFVSL 440
           +++A     ++P + ++  W A++    +H   D  +    Q+  LD      H+   ++
Sbjct: 458 LNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 517

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIK 467
             +   +G +S+  +   MM+E  G+K
Sbjct: 518 YAS---AGRLSDAAKVRKMMKES-GVK 540


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 401/713 (56%), Gaps = 40/713 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL----KACRNLVDGKKIHCSVLK 56
           MIS Y+R  + + A + F Q         D +++  +L    + CR L D +++      
Sbjct: 86  MISGYLRNSKFNLARNLFDQMP-----ERDLFSWNVMLTGYVRNCR-LGDARRL----FD 135

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           L  E DV    SLL  Y + G  + AR++FD+MP ++S SWN +++ Y  +G   EA  +
Sbjct: 136 LMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLL 195

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +         D I+   ++    R   +     L     V+  + +N  +S      YA
Sbjct: 196 FESKS----DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG-----YA 246

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G +  A R+FD+   RDV +W ++++ Y Q+     A  FF  M +          VS
Sbjct: 247 QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-------NEVS 299

Query: 236 LTSIVA---QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             +++A   Q      +R +   +  R     ++   N ++  Y ++G I  A   F+ +
Sbjct: 300 YNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P +D +SW  +I GYAQ+G   EA+ +F  +++  E + N+ T+   L   + + AL  G
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE-SLNRATFGCALSTCADIAALELG 413

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IH + +K       FV   L+ MY KCG ID+A   F  +     V WN +++ +  H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F  M   GV+PD IT V +L+ACSH+GL+  G  YF+ M +++G+ P  KH
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y CM+DL GRAG L  A + I+NMP +P A+ WGALLGA RIHGN ELG  A++ +F+++
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            +N G YVL+SN+YA  G+W   D++RS  RD G++K PG+S +EV NK+  F  G+ +H
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ E+IY  L  L  KM+  GYV     VL DVEE+EKEH+L  HSE+LA+AFGI++ P 
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             PI++ KNLRVC DCH+  K IS+I  R II+RDS+RFHHF +G CSCGDYW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 203/455 (44%), Gaps = 28/455 (6%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D+      +  + R G  + A  +F+ MP R S S+NAMISGY ++     A ++ D+M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              +    + +   +  C   D   +  L  L   K  + +     N+L++ YA+ G + 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGD---ARRLFDLMPEKDVVSW-----NSLLSGYAQNGYVD 159

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD M E++ +SWN ++AAY  +     A   F +        DL++   L     
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFV 215

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           +     ++R +   +  R     D I  N ++  YA+ G ++ A  +F+  P +DV +W 
Sbjct: 216 RKKKLGDARWLFDKMPVR-----DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT 270

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +++GY QNG+  EA   F  M E NE+     +Y +++  Y       + + I   + +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQT----KKMDIARELFE 321

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           +  C ++     ++  YG+ G I  A   F  +P+   V W AII+ +   G  ++ALN 
Sbjct: 322 SMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNM 381

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F ++  +G   +  TF   L+ C+    +  G++  H    + G          ++ ++ 
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + G +  A++  + +  + D   W  +L     HG
Sbjct: 441 KCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 126/261 (48%), Gaps = 57/261 (21%)

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           ++GL+  G  YF+ M EE+ + P  KHY CM+DL GR   L                   
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
           GALLGA RIHGN ELG  A+   F++  +N G                      S  RD 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G++K PG+S  EV NK+  F  G                L+ + +++G++ +    ++  
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG--------------LFLSRERENIGFLEELDLKMR-E 902

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN-LRVCGDCHNWTKFISQITEREII 684
            E+EKE  L   SE LA A GI++ P   P ++ K  + VC DC +  K +S+I  R I 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RDS   H F + ICSCG+YW
Sbjct: 963 LRDS---HRFNESICSCGEYW 980



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 76/368 (20%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I+ + + G    AL VF+ M  R  VS+N++I+ Y +++    A   F  M +    
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE---- 108

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                                                D+   N ++  Y +   +  A  
Sbjct: 109 ------------------------------------RDLFSWNVMLTGYVRNCRLGDARR 132

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ +P KDV+SWN+L++GYAQNG   EA EVF  M E N I+ N      +L AY H G
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWN-----GLLAAYVHNG 187

Query: 348 ALRQGIKIHARVIKNCLCF------DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
                     R+ + CL F      D+    CL+  + +  ++ DA  LF ++P   ++ 
Sbjct: 188 ----------RIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WN +IS +   G     L+  R++ DE    D  T+ ++++    +G++ E + +F  M 
Sbjct: 238 WNTMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           E+  +      Y  M+  + +   + +A    ++MP R + S W  +     I G  ++G
Sbjct: 294 EKNEVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTM-----ITGYGQIG 342

Query: 522 AVASDRLF 529
            +A  R F
Sbjct: 343 DIAQARKF 350


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 403/713 (56%), Gaps = 73/713 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+  L++ L  D YT+P +++AC   R+  + K++H  VLKLGF+ DV+V  +L++ + 
Sbjct: 200 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 259

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
                  A ++F++  V DS SWN++++GY + GN  EA  I  +M              
Sbjct: 260 VCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP------------- 306

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
                                     E ++  SN++I ++   G++  A ++FD+M+E+D
Sbjct: 307 --------------------------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKD 340

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +V+W+++IA ++Q+     A   F  M + G+  D +  VS  S  A L      + +H 
Sbjct: 341 MVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS 400

Query: 255 FIMRRGW------------------------------FMEDVIIGNAVVDMYAKLGIINS 284
             ++ G                               ++ D+I  N+++  Y K  ++++
Sbjct: 401 LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDN 460

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A A+F+ +P KDV+SW+++I+GYAQN L  E + +FQ M+  +   P++ T VS++ A +
Sbjct: 461 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ-MSGFKPDETTLVSVISACA 519

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            + AL QG  +HA + +N L  +V + T L+DMY KCG ++ A+ +FY +       WNA
Sbjct: 520 RLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNA 579

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I    ++G  + +L+ F  M    V P+ ITF+ +L AC H GLV EGQ +F+ M  + 
Sbjct: 580 LILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 639

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            I+P++KHYGCMVDL GRAG L  A   +  MP+ PD + WGALLGAC+ HG+ E+G   
Sbjct: 640 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRV 699

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
             +L E+  ++ G++VL+SNIYA+ GKW+ V E+R +     + K PG S IE N  +  
Sbjct: 700 GRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHE 759

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G++THP  + I D L  +  K+K  GY PD + VL DV+E+EKE  L  HSE+LAIA
Sbjct: 760 FLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIA 819

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           FG+I+  P +PI+I KNLR+C DCH   K IS+   R+I+VRD +RFHHF+ G
Sbjct: 820 FGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/628 (39%), Positives = 377/628 (60%), Gaps = 24/628 (3%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI----TVASILPVCARSDNI 145
           P   +   N +I   C+ GN  +AL++L        S++P     T   ++  C   +++
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQALELL--------SLEPNPAQHTYELLILSCTHQNSL 86

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           L    +H +++++G + + F++  LINMY+ F  + +A +VFD+   R +  +N++  A 
Sbjct: 87  LDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRAL 146

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTL-------VSLTSIVAQLNDCRNSRSVHGFIMR 258
             +         +  M   GI  D  T        V+    V+ LN     R +H  I+R
Sbjct: 147 SLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLN---KGREIHAHILR 203

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G +   V I   +VDMYAK G +++A  VF  +PVK+V+SW+ +I  YA+NG A EA+E
Sbjct: 204 HG-YDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALE 262

Query: 319 VF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F ++M E  ++ PN  T VS+L A + + AL QG  IH  +++  L   + V + LV M
Sbjct: 263 LFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTM 322

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y +CG+++    +F Q+ +   V WN++IS +G+HG G KA+  F +M   GV P  I+F
Sbjct: 323 YARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISF 382

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           VS+L ACSH+GLV EG+  F+ M    GI P ++HY CMVDL GRA  L  A   I+NM 
Sbjct: 383 VSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMR 442

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           + P   +WG+LLG+CRIH N+EL   AS RLF+++  N G YVL+++IYA  G W+GV  
Sbjct: 443 IEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKR 502

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           V+ L   RGL+K PG S IEV  K+  F + +  +P+ E+++  L  L+ ++K  GYVP 
Sbjct: 503 VKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQ 562

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
              VL D++  EKE I+  HSE+LA+AFG+I+S     I+I K+LR+C DCH++TKFIS+
Sbjct: 563 TKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISK 622

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
              +EI+VRD NRFHHF+DG+CSCGDYW
Sbjct: 623 FANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 230/425 (54%), Gaps = 22/425 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I    + G L++A++      L+    P  +T+  ++ +C    +L+D +++H  +L+ 
Sbjct: 45  LIQSLCKQGNLTQALE-----LLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLEN 99

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ D F+A  L++MY  F   + ARK+FD    R    +NA+      +G+  E L++ 
Sbjct: 100 GFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMY 159

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILS----GLLIHLYIVKHGLEFNLFVSNNLINM 173
             M   G+  D  T   +L  C  S+  +S    G  IH +I++HG +  + +   L++M
Sbjct: 160 RRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDM 219

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT--MQQAGIQPDLL 231
           YAKFG + +A  VF+QM  ++VVSW+++IA Y ++     A   F    ++   + P+ +
Sbjct: 220 YAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSV 279

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFE 290
           T+VS+    A L      R +HG+I+R+G  ++ ++ + +A+V MYA+ G +     VF+
Sbjct: 280 TMVSVLQACAALAALEQGRLIHGYILRKG--LDSILPVISALVTMYARCGKLELGQRVFD 337

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  +DV+SWN+LI+ Y  +G   +AI +F+ M   N + P+  ++VS+L A SH G + 
Sbjct: 338 QMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTY-NGVEPSPISFVSVLGACSHAGLVD 396

Query: 351 QG-IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP--WNAIIS 407
           +G +  ++  + + +C  V    C+VD+ G+  R+++A  +   + R    P  W +++ 
Sbjct: 397 EGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENM-RIEPGPKVWGSLLG 455

Query: 408 CHGIH 412
              IH
Sbjct: 456 SCRIH 460


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/672 (37%), Positives = 386/672 (57%), Gaps = 37/672 (5%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+ +    G  N AR+LFD++P  D  + + +IS     G + EA+ I   ++  G+  D
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
                +    CA S + L    +H    + G+  ++FV N LI+ Y K   +  A RVFD
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            ++ RDVVSW S+ + Y +   P      F  M  +G++P+ +T+ S+    A+L D ++
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY- 307
            + +HGF +R G  + ++ + +A+V +YAK   +  A  VF+ +P +DV+SWN ++T Y 
Sbjct: 198 GKEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 308 ----------------------------------AQNGLASEAIEVFQMMEECNEINPNQ 333
                                              +NG + EA+E+F+ M++     PN+
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNE 315

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T  SILPA S    LR G +IH  V ++    D+   T L+ MY KCG ++ + ++F  
Sbjct: 316 ITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM 375

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           + R   V WN +I  + +HG G +AL  F +ML   V+P+ +TF  +L+ CSHS LV EG
Sbjct: 376 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG 435

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            + F+ M  +  ++P   HY C+VD++ RAG L  A+ FIQ MP+ P AS WGALL ACR
Sbjct: 436 VQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACR 495

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           ++ N+EL  +++ +LFE++  N G YV + NI      W    +VR L ++RG+ KTPG 
Sbjct: 496 VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGC 555

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S ++V NKV  F  G++++ + +KIY+ L  L  KMK  GY PD  +VLQD++++EK   
Sbjct: 556 SWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAES 615

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           L +HSE+LA+AFGI++   +S I++FKNLR+CGDCHN  K++S++    I+VRDS RFHH
Sbjct: 616 LCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHH 675

Query: 694 FKDGICSCGDYW 705
           FK+G CSC D W
Sbjct: 676 FKNGNCSCKDLW 687



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 250/504 (49%), Gaps = 46/504 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           +IS     G  +EA+   Y      G++PD   F    KAC    D    K++H    + 
Sbjct: 49  LISALTTHGLSNEAIK-IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRC 107

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  +L+H Y +      AR++FDD+ VRD  SW ++ S Y + G   + +D+ 
Sbjct: 108 GVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVF 167

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GV  +P+TV+SILP CA   ++ SG  IH + V+HG+  NLFV + L+++YAK 
Sbjct: 168 REMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKC 227

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY--------------EQSNDPITAH-------- 215
             +R A  VFD M  RDVVSWN ++ AY              + S D + A         
Sbjct: 228 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 287

Query: 216 -------------GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
                          F  MQ+ G +P+ +T+ S+    +   + R  + +H ++ R  W 
Sbjct: 288 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRH-WK 346

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           + D+    A++ MYAK G +N +  VF+ +  KDV++WNT+I   A +G   EA+ +F  
Sbjct: 347 VGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDK 406

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKC 381
           M   + + PN  T+  +L   SH   + +G++I   + ++ L   D    +C+VD+Y + 
Sbjct: 407 M-LLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRA 465

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 439
           GR+++A      +P   ++  W A+++   ++   + A    +++ +  + P++   +VS
Sbjct: 466 GRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVS 523

Query: 440 LLTACSHSGLVSEGQRYFHMMQEE 463
           L      + + SE  +   +M+E 
Sbjct: 524 LFNILVTAKMWSEASQVRILMKER 547



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 3/244 (1%)

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +G  ++ +   +G  N A  +F+ +P  D  + +TLI+    +GL++EAI+++  ++E  
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE-R 72

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I P+   +++   A +  G   +  ++H    +  +  DVFV   L+  YGKC  ++ A
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 132

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F  +     V W ++ SC+   G   K ++ FR+M   GV+P+ +T  S+L AC+  
Sbjct: 133 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 192

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             +  G+   H      G+  +L     +V L+ +   +  A      MP R D   W  
Sbjct: 193 KDLKSGKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNG 250

Query: 508 LLGA 511
           +L A
Sbjct: 251 VLTA 254


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/661 (38%), Positives = 389/661 (58%), Gaps = 14/661 (2%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYC 105
           +++H   LK       FV++ LL +Y    + ++  AR +FD +  R    WN +I  Y 
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           ++  + + + +  E+  E +  D  T+  ++  CAR   +  G  IH   +K G   ++F
Sbjct: 90  ENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +L+NMY+K G +  A +VFD M+++DVV WNS+I  Y +  +   A   F  M +  
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER- 207

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
                    S T +V  L+ C    S      +      +++  NA+++ Y K G  +SA
Sbjct: 208 ------DAFSWTVLVDGLSKCGKVESARKLFDQMP--CRNLVSWNAMINGYMKSGDFDSA 259

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F  +P+ D+++WN +I GY  NG   +A+++F MM +     P+  T VS+L A S 
Sbjct: 260 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS-RPSHATLVSVLSAVSG 318

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +  L +G  IH+ + KN    D  + T L++MY KCG I+ A+++F  + +     W AI
Sbjct: 319 LAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAI 378

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           I   GIHG  + AL  F +M   G++P+ I F+ +L AC+H+GLV +G++YF MM  E+ 
Sbjct: 379 IVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYK 438

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           I+P L+HYGC+VD+  RAGHL  A N I+NMP+ P+  IW +LLG  R HG +++G  A+
Sbjct: 439 IEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAA 498

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
            R+ EV  E +G Y+L+SN+YA  G WE V  VR +   RG +K PG SS+E    +  F
Sbjct: 499 QRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEF 558

Query: 586 YTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE-EDEKEHILTSHSERLAIA 644
             G+ +HP+ ++IY ++  +  K+K +G+VPD + VL  +E E EKE  L +HSERLAIA
Sbjct: 559 IVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIA 618

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG+I+  P  PI+I KNLRVC DCH+ TK +S+I  REIIVRD+ RFHHFK+G CSC DY
Sbjct: 619 FGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDY 678

Query: 705 W 705
           W
Sbjct: 679 W 679



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 229/472 (48%), Gaps = 29/472 (6%)

Query: 29  PDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T P V+K C  L    +GK+IH   LK+GF  DVFV  SL++MY + G  + ARK+
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD M  +D   WN++I GY + G    AL + +EM  E  +     +   L  C + ++ 
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP-ERDAFSWTVLVDGLSKCGKVESA 228

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
                    +       NL   N +IN Y K G    AL +F QM   D+V+WN +IA Y
Sbjct: 229 RK-------LFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGY 281

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
           E +   + A   F  M + G +P   TLVS+ S V+ L      R +H ++ + G F  D
Sbjct: 282 ELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNG-FELD 340

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
            I+G ++++MYAK G I SA  VF  +  K V  W  +I G   +G+A+ A+ +F  +E 
Sbjct: 341 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALF--LEM 398

Query: 326 CNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCG 382
           C   + PN   ++ +L A +H G +  G + +  ++ N    +  +    CLVD+  + G
Sbjct: 399 CKTGLKPNAIIFIGVLNACNHAGLVDDG-RQYFDMMMNEYKIEPTLEHYGCLVDILCRAG 457

Query: 383 RIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
            +++A +    +P S + V W +++     HG+ D      +++++  V P+ I    LL
Sbjct: 458 HLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE--VAPETIGCYILL 515

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
           +    +  + E   +   M  + G +   K  GC         H G  H FI
Sbjct: 516 SNMYAASGMWEKVSHVREMMYKRGFR---KDPGC-----SSVEHKGTLHEFI 559


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/653 (37%), Positives = 391/653 (59%), Gaps = 13/653 (1%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +VF   +L++ Y +  L ++AR++FD++P  D  S+N +I+ Y   G     L + +E+R
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              + +D  T++ ++  C     ++  L  H ++V  G +    V+N ++  Y++ G + 
Sbjct: 134 ELRLGLDGFTLSGVITACGDDVGLVRQL--HCFVVVCGHDCYASVNNAVLACYSRKGFLS 191

Query: 182 HALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            A RVF +M E   RD VSWN++I A  Q  + + A G F  M + G++ D+ T+ S+ +
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLT 251

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC-AVFEGLPVKDV 297
               + D    R  HG +++ G F  +  +G+ ++D+Y+K       C  VFE +   D+
Sbjct: 252 AFTCVKDLVGGRQFHGMMIKSG-FHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDL 310

Query: 298 ISWNTLITGYA-QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           + WNT+I+G++    L+ + +  F+ M+  N   P+  ++V +  A S++ +   G ++H
Sbjct: 311 VLWNTMISGFSLYEDLSEDGLWCFREMQR-NGFRPDDCSFVCVTSACSNLSSPSLGKQVH 369

Query: 357 ARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           A  IK+ + ++ V V   LV MY KCG + DA  +F  +P  ++V  N++I+ +  HG  
Sbjct: 370 ALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVE 429

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            ++L  F  ML++ + P+ ITF+++L+AC H+G V EGQ+YF+MM+E F I+P  +HY C
Sbjct: 430 VESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSC 489

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DL GRAG L  A   I+ MP  P +  W  LLGACR HGN+EL   A++    ++  N
Sbjct: 490 MIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYN 549

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV++SN+YA+  +WE    V+ L R+RG+KK PG S IE++ KV +F   + +HP  
Sbjct: 550 AAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMI 609

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVL---QDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           ++I+  +  +  KMK  GYVPD  + L   ++VE DE+E  L  HSE+LA+AFG+IS+  
Sbjct: 610 KEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEE 669

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             PI + KNLR+CGDCHN  K IS +T REI VRD++RFH FK+G CSC DYW
Sbjct: 670 GVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 244/489 (49%), Gaps = 27/489 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-TLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLG 58
           +I+ Y   G     +  F +   L  GL  D +T   V+ AC + V   +++HC V+  G
Sbjct: 112 LIAAYADRGECGPTLRLFEEVRELRLGL--DGFTLSGVITACGDDVGLVRQLHCFVVVCG 169

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALD 115
            +    V  ++L  Y R G  + AR++F +M     RD  SWNAMI    Q    +EA+ 
Sbjct: 170 HDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVG 229

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  EM   G+ +D  T+AS+L       +++ G   H  ++K G   N  V + LI++Y+
Sbjct: 230 LFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYS 289

Query: 176 K-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--FTTMQQAGIQPDLLT 232
           K  G M    +VF+++   D+V WN++I+ +    D ++  G   F  MQ+ G +PD  +
Sbjct: 290 KCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYED-LSEDGLWCFREMQRNGFRPDDCS 348

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            V +TS  + L+     + VH   ++       V + NA+V MY+K G ++ A  VF+ +
Sbjct: 349 FVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTM 408

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P  + +S N++I GYAQ+G+  E++ +F++M E  +I PN  T++++L A  H G + +G
Sbjct: 409 PEHNTVSLNSMIAGYAQHGVEVESLRLFELMLE-KDIAPNSITFIAVLSACVHTGKVEEG 467

Query: 353 IKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCH 409
            K +  ++K   C +      +C++D+ G+ G++ +A  +   +P    S+ W  ++   
Sbjct: 468 QK-YFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 410 GIHGQGD---KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             HG  +   KA N F ++      P    +V L    + +    E      +M+E  G+
Sbjct: 527 RKHGNVELAVKAANEFLRLEPYNAAP----YVMLSNMYASAARWEEAATVKRLMRER-GV 581

Query: 467 KPHLKHYGC 475
           K   K  GC
Sbjct: 582 K---KKPGC 587



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 192/441 (43%), Gaps = 53/441 (12%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T  ++L  C    ++++G ++H    K  +  + ++SN+   +Y+K G + +A   F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS- 249
              +V S+N++I AY + +    A   F  +     QPD+++  +L +  A   +C  + 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGECGPTL 126

Query: 250 --------------------------------RSVHGFIMRRGWFMEDVI--IGNAVVDM 275
                                           R +H F++  G    D    + NAV+  
Sbjct: 127 RLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCG---HDCYASVNNAVLAC 183

Query: 276 YAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           Y++ G ++ A  VF  +     +D +SWN +I    Q+    EA+ +F+ M     +  +
Sbjct: 184 YSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVR-RGLKVD 242

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-GRIDDAMSLF 391
             T  S+L A++ V  L  G + H  +IK+    +  V + L+D+Y KC G + +   +F
Sbjct: 243 MFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVF 302

Query: 392 YQVPRSSSVPWNAIISCHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
            ++     V WN +IS   ++    +  L  FR+M   G RPD  +FV + +ACS+    
Sbjct: 303 EEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSP 362

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
           S G++   +  +       +     +V ++ + G++  A      MP     S+   + G
Sbjct: 363 SLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAG 422

Query: 511 ACRIHGNMELGAVASDRLFEV 531
             + HG      V S RLFE+
Sbjct: 423 YAQ-HGV----EVESLRLFEL 438


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 401/713 (56%), Gaps = 40/713 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL----KACRNLVDGKKIHCSVLK 56
           MIS Y+R  + + A + F Q         D +++  +L    + CR L D +++      
Sbjct: 86  MISGYLRNSKFNLARNLFDQMP-----ERDLFSWNVMLTGYVRNCR-LGDARRL----FD 135

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           L  E DV    SLL  Y + G  + AR++FD+MP ++S SWN +++ Y  +G   EA  +
Sbjct: 136 LMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLL 195

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +         D I+   ++    R   +     L     V+  + +N  +S      YA
Sbjct: 196 FESKS----DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG-----YA 246

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G +  A R+FD+   RDV +W ++++ Y Q+     A  FF  M +          VS
Sbjct: 247 QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-------NEVS 299

Query: 236 LTSIVA---QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             +++A   Q      +R +   +  R     ++   N ++  Y ++G I  A   F+ +
Sbjct: 300 YNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P +D +SW  +I GYAQ+G   EA+ +F  +++  E + N+ T+   L   + + AL  G
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE-SLNRATFGCALSTCADIAALELG 413

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IH + +K       FV   L+ MY KCG ID+A   F  +     V WN +++ +  H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F  M   GV+PD IT V +L+ACSH+GL+  G  YF+ M +++G+ P  KH
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y CM+DL GRAG L  A + I+NMP +P A+ WGALLGA RIHGN ELG  A++ +F+++
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            +N G YVL+SN+YA  G+W   D++RS  RD G++K PG+S +EV NK+  F  G+ +H
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ E+IY  L  L  KM+  GYV     VL DVEE+EKEH+L  HSE+LA+AFGI++ P 
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             PI++ KNLRVC DCH+  K IS+I  R II+RDS+RFHHF +G CSCGDYW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 203/455 (44%), Gaps = 28/455 (6%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D+      +  + R G  + A  +F+ MP R S S+NAMISGY ++     A ++ D+M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              +    + +   +  C   D   +  L  L   K     ++   N+L++ YA+ G + 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGD---ARRLFDLMPEK-----DVVSWNSLLSGYAQNGYVD 159

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VFD M E++ +SWN ++AAY  +     A   F +        DL++   L     
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFV 215

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           +     ++R +   +  R     D I  N ++  YA+ G ++ A  +F+  P +DV +W 
Sbjct: 216 RKKKLGDARWLFDKMPVR-----DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWT 270

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +++GY QNG+  EA   F  M E NE+     +Y +++  Y       + + I   + +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQT----KKMDIARELFE 321

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           +  C ++     ++  YG+ G I  A   F  +P+   V W AII+ +   G  ++ALN 
Sbjct: 322 SMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNM 381

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F ++  +G   +  TF   L+ C+    +  G++  H    + G          ++ ++ 
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + G +  A++  + +  + D   W  +L     HG
Sbjct: 441 KCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 76/368 (20%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I+ + + G    AL VF+ M  R  VS+N++I+ Y +++    A   F  M +    
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE---- 108

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                                                D+   N ++  Y +   +  A  
Sbjct: 109 ------------------------------------RDLFSWNVMLTGYVRNCRLGDARR 132

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ +P KDV+SWN+L++GYAQNG   EA EVF  M E N I+ N      +L AY H G
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWN-----GLLAAYVHNG 187

Query: 348 ALRQGIKIHARVIKNCLCF------DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
                     R+ + CL F      D+    CL+  + +  ++ DA  LF ++P   ++ 
Sbjct: 188 ----------RIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WN +IS +   G     L+  R++ DE    D  T+ ++++    +G++ E + +F  M 
Sbjct: 238 WNTMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           E+  +      Y  M+  + +   + +A    ++MP R + S W  +     I G  ++G
Sbjct: 294 EKNEVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTM-----ITGYGQIG 342

Query: 522 AVASDRLF 529
            +A  R F
Sbjct: 343 DIAQARKF 350


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/711 (36%), Positives = 410/711 (57%), Gaps = 14/711 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA--CRNLVD-GKKIHCSVLKL 57
           +++ YV+    S+ +  F++     G+ P+ +TF  VL A   +  VD G+++H   +K 
Sbjct: 172 LLTGYVQGRACSDVMALFFRMR-AEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKF 230

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VFV  SL++MY + GL   A+ +F  M  RD  SWN +++G   + + +EAL + 
Sbjct: 231 GCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLF 290

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            + R     +   T ++++ +CA    +     +H  ++KHG   +  V   +++ Y+K 
Sbjct: 291 HDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKC 350

Query: 178 GMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS- 235
           G +  A  +F  M   ++VVSW ++I    Q+ D   A   F+ M++  ++P+  T  + 
Sbjct: 351 GELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTV 410

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           LT+ +  L        +H  I++   +     +G A++  Y+KLG    A ++F+ +  K
Sbjct: 411 LTASIPILLP-----QIHAQIIKTN-YQHAPSVGTALLASYSKLGNTEEALSIFKMIDHK 464

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGALRQGIK 354
           DV++W+ +++ Y+Q G    A  VF  M     + PN+ T  S + A  S    + QG +
Sbjct: 465 DVVAWSAMLSCYSQAGDCDGATNVFIKMS-MQGMKPNEFTISSAIDACASPTAGIDQGRQ 523

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            HA  IK      + V + LV MY + G ID A  +F +      V WN++IS +  HG 
Sbjct: 524 FHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGY 583

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +AL+ FRQM   G+  D  TF++++  C+H+GLV EGQ+YF  M  +  I P ++HY 
Sbjct: 584 SKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYS 643

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL+ RAG L    N I+ MP    A +W  LLGACR+H N+ELG +A+ +L  ++ +
Sbjct: 644 CMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPD 703

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           +   YVL+SNIYA  G+W+  DEVR L   + +KK  G S I++ NKV  F   +++HP 
Sbjct: 704 DSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPL 763

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            E+IY +L+ +T ++K  GY P+ S VL D+ E++KE +L  HSERLA+AFG+I++PP++
Sbjct: 764 SEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRT 823

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P+QI KNLRVCGDCH   K +S I +REII+RD +RFHHF  G CSCGD+W
Sbjct: 824 PLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 149/512 (29%), Positives = 248/512 (48%), Gaps = 24/512 (4%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE-WDVFV 65
           RCGR+  A     +     GL PD              V G+++HC  +K GF+  +V V
Sbjct: 93  RCGRVQGAA--VSRVLKVCGLIPD-------------RVSGEQLHCLCVKCGFDRAEVGV 137

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             +L+ MY + G     R +F+ MP R+  +W ++++GY Q     + + +   MR EGV
Sbjct: 138 GTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGV 197

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +P T  S+L   A    +  G  +H   VK G    +FV N+LINMY+K G++  A  
Sbjct: 198 WPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKA 257

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF QM  RD+VSWN+++A    +   + A   F   + +  +    T  ++  + A L  
Sbjct: 258 VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQ 317

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLI 304
              +R +H  +++ G F  D  +  A++D Y+K G ++ A  +F  +P  ++V+SW  +I
Sbjct: 318 LALARQLHSCVLKHG-FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMI 376

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            G  QN     A  +F  M E N + PN+ TY ++L A   +  L Q   IHA++IK   
Sbjct: 377 GGCIQNADIPLAAALFSRMREDN-VKPNEFTYSTVLTASIPI-LLPQ---IHAQIIKTNY 431

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
                V T L+  Y K G  ++A+S+F  +     V W+A++SC+   G  D A N F +
Sbjct: 432 QHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIK 491

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M  +G++P+  T  S + AC+      +  R FH +  ++  +  +     +V ++ R G
Sbjct: 492 MSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKG 551

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +  A    +    R D   W +++     HG
Sbjct: 552 SIDSARIVFERQTDR-DLVSWNSMISGYAQHG 582



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 18/373 (4%)

Query: 82  ARKLFDDMPVRDSGSWNA----MISGYCQSGNAV-EALDILDEM----RLEGVSMDPITV 132
           AR+  D MP RD+ + ++     I  Y + G    EALD   ++    R++G +     V
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGAA-----V 102

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + +L VC    + +SG  +H   VK G +   + V   L++MY K G +     VF+ M 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           +R+VV+W S++  Y Q          F  M+  G+ P+  T  S+ S VA        R 
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR 222

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH   ++ G     V + N++++MY+K G++  A AVF  +  +D++SWNTL+ G   N 
Sbjct: 223 VHAQSVKFGC-RSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNE 281

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+++F      +    +Q TY +++   +++  L    ++H+ V+K+    D  V 
Sbjct: 282 HQLEALQLFH-DSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM 340

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           T ++D Y KCG +DDA ++F  +P S + V W A+I     +     A   F +M ++ V
Sbjct: 341 TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNV 400

Query: 431 RPDHITFVSLLTA 443
           +P+  T+ ++LTA
Sbjct: 401 KPNEFTYSTVLTA 413


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/699 (35%), Positives = 383/699 (54%), Gaps = 66/699 (9%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           M+ + G    AR +F +MP RD+ SW  M+ G  ++G   EA+  L +M  +G +    T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK--------------- 176
           + ++L  CA +     G  +H ++VK GL   + V+N+++NMY K               
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 177 ----------------FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
                            G M  A  +F+ M +R +VSWN++IA Y Q+     A   F+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 221 M-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR-------------------- 259
           M  ++ + PD  T+ S+ S  A L + R  + VH +I+R                     
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 260 ---------GWFME---DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
                       ME   +VI   A+++ Y K+G + SA  +F  +  +DV++W  +I GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            QNG   EAI++F+ M  C    PN  T  ++L   + +  L  G +IH R I++ L   
Sbjct: 301 EQNGRNDEAIDLFRSMITCGP-EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 359

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
             V+  ++ MY + G    A  +F QV  R  ++ W ++I     HGQG++A+  F +ML
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             GV PD IT+V +L+ACSH+G V+EG+RY+  ++ E  I P + HY CMVDL  RAG  
Sbjct: 420 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 479

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A  FI+ MPV PDA  WG+LL ACR+H N EL  +A+++L  +D  N G Y  ++N+Y
Sbjct: 480 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 539

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           +  G+W     +    +++ ++K  G+S   + +K+ +F   +  HP+ + +Y     + 
Sbjct: 540 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 599

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
            ++K  G+VPD   VL DV+++ KE +L+ HSE+LAIAFG+IS+P K+ +++ KNLRVC 
Sbjct: 600 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 659

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K IS++T+REIIVRD+ RFHHF+DG+CSC DYW
Sbjct: 660 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 175/397 (44%), Gaps = 48/397 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y + G  ++A+  F +    S + PD +T   VL AC NL +   GK++H  +L+ 
Sbjct: 161 MIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT 220

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDD----------------------------- 88
              ++  V  +L+  Y + G    AR++ D                              
Sbjct: 221 EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 280

Query: 89  ----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
               M  RD  +W AMI GY Q+G   EA+D+   M   G   +  T+A++L VCA    
Sbjct: 281 MFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 340

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIA 203
           +  G  IH   ++  LE +  VSN +I MYA+ G    A R+FDQ+  R + ++W S+I 
Sbjct: 341 LDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 400

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A G F  M +AG++PD +T V + S  +        +  +  I       
Sbjct: 401 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 460

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
            ++     +VD+ A+ G+ + A      +PV+ D I+W +L++    +    LA  A E 
Sbjct: 461 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 520

Query: 320 FQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKI 355
                    I+P N G Y +I   YS  G      +I
Sbjct: 521 LL------SIDPNNSGAYSAIANVYSACGRWSDAARI 551


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/701 (36%), Positives = 399/701 (56%), Gaps = 23/701 (3%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           LT G       + P+L  C    +L   + +H  + K G   D+FVA SL++ Y R G A
Sbjct: 70  LTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAA 129

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR+LFD MP R+  +W A+++GY  +      L++  EM   G      T+ + L  C
Sbjct: 130 RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
             S ++  G  +H Y +K+G E    + N+L ++YAK G +  ALR F ++ E++V++W 
Sbjct: 190 LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWT 249

Query: 200 SIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           ++I+A  +  + +      F  M   G+ P+  TL S+ S+     D    + V  F  +
Sbjct: 250 TMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 309

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ--------- 309
            G    ++ + N+ + +Y + G  + A  +FE +    +I+WN +I+GYAQ         
Sbjct: 310 IGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368

Query: 310 --NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
                  +A+ +F+ ++  + + P+  T+ SIL   S + AL QG +IHA+ IK+    D
Sbjct: 369 QARSRGFQALTIFRDLKR-SVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSD 427

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V V + LV+MY KCG I DA   F ++P  + V W ++IS +  HGQ  +A+  F +M  
Sbjct: 428 VVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRL 487

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            GVRP+ ITFVSLL+ACS++GLV E + YF MM++E+ I+P + HYGCM+D+F R G + 
Sbjct: 488 AGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVE 547

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A +FI+     P+ +IW +L+  CR HGNMEL   A+D+L E+  + +  Y+L+ N+Y 
Sbjct: 548 DAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYI 607

Query: 548 NVGKWEGVDEVRSLAR--DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           +  +W+ V  VR L +  D G+ +   W  I + +KV  F   +RTHP+  ++Y  L NL
Sbjct: 608 STERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRTHPQATELYQLLENL 665

Query: 606 TAKMKSLGYVPDKSFVLQDVEEDEKEHI--LTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
             K K++GY P ++  L D E+DEK     L  HSERLA+A G++ +PP + +++ KN+ 
Sbjct: 666 LEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNIT 725

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           +C DCH+  K  S +  REIIVRDS R H FKDG CSCGD+
Sbjct: 726 MCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 202/422 (47%), Gaps = 20/422 (4%)

Query: 111 VEALDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           +  LD+ + M +  EG ++       +L  C    ++ +   +H ++ K G   ++FV+ 
Sbjct: 58  LRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVAT 117

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
           +L+N Y + G  R A R+FD M ER+VV+W +++  Y  ++ P      F  M + G  P
Sbjct: 118 SLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP 177

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACA 287
              TL +  +      D    + VHG+ ++ G   E +  +GN++  +YAKLG ++SA  
Sbjct: 178 SHYTLGATLNACLASCDVDLGKQVHGYAIKYG--AESITSMGNSLCSLYAKLGSLDSALR 235

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASE-AIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            F  +P K+VI+W T+I+  A++    E  + +F  M   + + PN+ T  S++      
Sbjct: 236 AFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDM-LMDGVMPNEFTLTSVMSLCGTR 294

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             L  G ++ A   K     ++ V    + +Y + G  D+AM LF Q+  +S + WNA+I
Sbjct: 295 LDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMI 354

Query: 407 SCHG-----------IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           S +               +G +AL  FR +    ++PD  TF S+L+ CS    + +G++
Sbjct: 355 SGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQ 414

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
             H    + G    +     +V+++ + G +  A+     MP R   + W +++     H
Sbjct: 415 -IHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVT-WTSMISGYSQH 472

Query: 516 GN 517
           G 
Sbjct: 473 GQ 474


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/716 (36%), Positives = 410/716 (57%), Gaps = 47/716 (6%)

Query: 33  TFPPVLKAC---RNLVDGKKIH------------------------CSVL---KLGFEW- 61
           TF  +LKAC   R+L+ GK +H                        C  L   +  F+  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 62  ---DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              +VF   +L++ Y +  L ++AR++FD++P  D  S+N +I+ Y   G    AL +  
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           E+R     +D  T++ ++  C     ++  L  H ++V  G +    V+N ++  Y++ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLVRQL--HCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 179 MMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            +  A RVF +M E   RD VSWN++I A  Q  + + A   F  M + G++ D+ T+ S
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC-AVFEGLPV 294
           + +    + D       HG +++ G F  +  +G+ ++D+Y+K       C  VFE +  
Sbjct: 249 VLTAFTCVKDLVGGMQFHGMMIKSG-FHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 295 KDVISWNTLITGYAQ-NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            D++ WNT+I+G++Q   L+ + I  F+ M+  N  +P+  ++V +  A S++ +   G 
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQH-NGFHPDDCSFVCVTSACSNLSSPSVGK 366

Query: 354 KIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           ++HA  IK+ + ++ V V   LV MY KCG + DA  +F  +P  + V  N++I+ +  H
Sbjct: 367 QVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQH 426

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G   ++L  F  ML + + P+ ITF+++L+AC H+G V EGQ+YF+MM+E F I+P  +H
Sbjct: 427 GVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEH 486

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y CM+DL GRAG L  A   I+ MP  P +  W  LLGACR HGN+EL   A++   +++
Sbjct: 487 YSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLE 546

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
             N   YV++SN+YA+  +WE    V+ L R+RG+KK PG S IE++ KV +F   + +H
Sbjct: 547 PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSH 606

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVL---QDVEEDEKEHILTSHSERLAIAFGIIS 649
           P  ++I+  +  +  KMK  GYVPD  + L   ++VE DEKE  L  HSE+LA+AFG+IS
Sbjct: 607 PMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLIS 666

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +    PI + KNLR+CGDCHN  K IS IT REI VRD++RFH FK+G CSCGDYW
Sbjct: 667 TEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 247/489 (50%), Gaps = 27/489 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-TLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLG 58
           +I+ Y   G    A+  F +   L  GL  D +T   V+ AC + V   +++HC V+  G
Sbjct: 112 LIAAYADRGECRPALRLFAEVRELRFGL--DGFTLSGVIIACGDDVGLVRQLHCFVVVCG 169

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALD 115
           ++    V  ++L  Y R G  N AR++F +M     RD  SWNAMI    Q    +EA++
Sbjct: 170 YDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVE 229

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  EM   G+ +D  T+AS+L       +++ G+  H  ++K G   N  V + LI++Y+
Sbjct: 230 LFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYS 289

Query: 176 K-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--FTTMQQAGIQPDLLT 232
           K  G M    +VF+++   D+V WN++I+ + Q  D ++  G   F  MQ  G  PD  +
Sbjct: 290 KCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED-LSEDGIWCFREMQHNGFHPDDCS 348

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            V +TS  + L+     + VH   ++       V + NA+V MY+K G ++ A  VF+ +
Sbjct: 349 FVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTM 408

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P  +++S N++I GYAQ+G+  E++ +F++M +  +I PN  T++++L A  H G + +G
Sbjct: 409 PEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQ-KDIAPNTITFIAVLSACVHTGKVEEG 467

Query: 353 IKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCH 409
            K +  ++K     +      +C++D+ G+ G++ +A  +   +P    S+ W  ++   
Sbjct: 468 QK-YFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 410 GIHGQGD---KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             HG  +   KA N F Q+      P    +V L    + +    E      +M+E  G+
Sbjct: 527 RKHGNVELAVKAANEFLQLEPYNAAP----YVMLSNMYASAARWEEAATVKRLMRER-GV 581

Query: 467 KPHLKHYGC 475
           K   K  GC
Sbjct: 582 K---KKPGC 587


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/756 (36%), Positives = 422/756 (55%), Gaps = 52/756 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT-----------LTSGL----RPDF-------------- 31
           +++ Y RCGRL+ A++ F   +           L S L    R D               
Sbjct: 102 LLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHP 161

Query: 32  ---YTFPPVLKACRNLVD-------GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLA 79
              +T   VL+A  +L         G++ H   LK G       F   +LL MY R GL 
Sbjct: 162 LTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLV 221

Query: 80  NVARKLFDD-MPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
             A++LF    P R D  +WN M+S   QSG   EA+  L +M   GV  D +T AS LP
Sbjct: 222 ADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALP 281

Query: 138 VCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RD 194
            C+R + +  G  +H Y++K   L  N FV++ L++MYA    +  A +VFD + +  + 
Sbjct: 282 ACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQ 341

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +  WN++I  Y Q+     A   F  M+ +AG  P   T+ S+    A+        +VH
Sbjct: 342 LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVH 401

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G++++RG    +  + NA++DMYA+LG  + A  +F  + + DV+SWNTLITG    G  
Sbjct: 402 GYVVKRG-MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 460

Query: 314 SEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           ++A ++ + M++  E  + PN  T +++LP  + + A  +G +IH   +++ L  DV V 
Sbjct: 461 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 520

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           + LVDMY KCG +  + ++F ++PR +++ WN +I  +G+HG G +A   F +M   G  
Sbjct: 521 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 580

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           RP+ +TF++ L ACSHSG+V  G + FH M+ + G++P      C+VD+ GRAG L  A+
Sbjct: 581 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 640

Query: 491 NFIQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             + +M       S W  +LGACR+H N+ LG +A +RL E++ E   +YVL+ NIY+  
Sbjct: 641 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 700

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W    EVRS  R RG+ K PG S IEV+  +  F  G   HP  E+++  +  L  +M
Sbjct: 701 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 760

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
            + GY PD S VL D+++ +K  +L  HSE+LAIAFG++ + P + I++ KNLRVC DCH
Sbjct: 761 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 820

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              KF+S++  REI++RD  RFHHF++G CSCGDYW
Sbjct: 821 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 252/565 (44%), Gaps = 25/565 (4%)

Query: 30  DFYTFPPVLKACRNLVDGKK---IHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D    PP +K+   L D +    IH + L+ G        VA +LL  Y R G    A +
Sbjct: 58  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 117

Query: 85  LFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC--- 139
           +F  +     D+ S+N++IS  C       AL  L  M   G  +   T+ S+L      
Sbjct: 118 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 177

Query: 140 -ARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERD 194
            A +  +  G   H + +K+GL      F  N L++MYA+ G++  A R+F        D
Sbjct: 178 PAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGD 237

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+WN++++   QS     A      M   G++PD +T  S     ++L      R +H 
Sbjct: 238 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 297

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGL 312
           ++++      +  + +A+VDMYA    +  A  VF+ +P   K +  WN +I GYAQ G+
Sbjct: 298 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 357

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EA+ +F  ME      P + T  S+LPA +   A      +H  V+K  +  + FV  
Sbjct: 358 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 417

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDE-G 429
            L+DMY + G+ D A  +F  V     V WN +I+   + G    A    R+M  L+E G
Sbjct: 418 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 477

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V P+ IT ++LL  C+     + G+   H       +   +     +VD++ + G L ++
Sbjct: 478 VVPNAITLMTLLPGCAILAAPARGKE-IHGYAVRHALDTDVAVGSALVDMYAKCGCLALS 536

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA-- 547
                 +P R +   W  L+ A  +HG      V  DR+             M+ + A  
Sbjct: 537 RAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACS 595

Query: 548 NVGKWE-GVDEVRSLARDRGLKKTP 571
           + G  + G+    ++ RD G++ TP
Sbjct: 596 HSGMVDRGLQLFHAMERDHGVEPTP 620



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 30/298 (10%)

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAK 278
           TM     Q D   L       A L D R++R++H   +RRG        + NA++  YA+
Sbjct: 49  TMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYAR 108

Query: 279 LGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI------- 329
            G + +A  VF  +     D +S+N+LI+          A+ +F+  +            
Sbjct: 109 CGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAG 158

Query: 330 -NP-NQGTYVSILPAYSHV----GALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKC 381
            +P    T VS+L A SH+     A+R G + HA  +KN L      F    L+ MY + 
Sbjct: 159 GHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARL 218

Query: 382 GRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           G + DA  LF      R   V WN ++S     G  D+A+     M+  GVRPD +TF S
Sbjct: 219 GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFAS 278

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            L ACS   L+  G+     + ++  +  +      +VD++     +G A      +P
Sbjct: 279 ALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVP 336


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 406/771 (52%), Gaps = 79/771 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           ++S Y + G+   A+D F     T    P+ +TF  V+K+C  L    ++   +L L  +
Sbjct: 129 IMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGAL-GWHEVALQLLGLLSK 187

Query: 61  WDVF----VAASLLHMYCRFGLANVARK-------------------------------L 85
           +D      V  +L+ M  R G  + A K                               +
Sbjct: 188 FDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEI 247

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           F  MP RD  SWN +IS   +SG   EALD++ +M  +GV  D  T  S L  CAR  ++
Sbjct: 248 FKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSL 307

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H+ ++++    + +V++ ++ +YAK G  + A RVF  + +R+ VSW  +I  +
Sbjct: 308 EWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGF 367

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q      +   F  M+   +  D   L +L S      D      +H   ++ G     
Sbjct: 368 LQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSG-HTRA 426

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V++ N+++ MYAK G + +A  +F  +  +D++SW  +IT Y+Q G  ++A E F  M  
Sbjct: 427 VVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMST 486

Query: 326 CNEIN-------------------------------PNQGTYVSILPAYSHVGALRQGIK 354
            N I                                P+  TYV++    + +GA + G +
Sbjct: 487 RNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQ 546

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           I    +K  L  D  V   ++ MY KCGRI +A   F  + R   V WNA+I+ +  HG 
Sbjct: 547 IIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGM 606

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A+  F  +L++G +PD+I++V++L+ CSHSGLV EG+ YF MM+ +  I P L+H+ 
Sbjct: 607 GKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFS 666

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAGHL  A N I  MP++P A +WGALL AC+ HGN +L  +A+  LF++DS 
Sbjct: 667 CMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSP 726

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
             G Y+L++ +YA+ GK +   +VR L RD+G+KK+PG+S +EVNN+V +F   + +HP+
Sbjct: 727 GSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQ 786

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I ++L  L  K+  LGYV           E  +  I   HSE+LA+AFGI+S P   
Sbjct: 787 VIAIREKLDELMEKIAHLGYVR---------TESPRSEI--HHSEKLAVAFGIMSLPAWM 835

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI I KNLR+C DCH   K IS +T+RE ++RD  RFHHFK G CSC DYW
Sbjct: 836 PIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 209/461 (45%), Gaps = 43/461 (9%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E +V     +++ Y + G  + A +LF  MP RD  SWN ++SGY QSG  + ALDI   
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 120 MRLEGVSM-DPITVASILPVC--------------------ARSDNILSGLLIHLYIVKH 158
           MR  G S+ +  T   ++  C                    ++ D  +   L+ + +   
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCG 208

Query: 159 GLEF-----------NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
            ++F            +   N+++  YAK   + HAL +F  M ERDVVSWN +I+A  +
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           S     A      M   G++PD  T  S  +  A+L+     + +H  ++R    + D  
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHI-DPY 327

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEEC 326
           + +A+V++YAK G    A  VF  L  ++ +SW  LI G+ Q G  SE++E+F QM  E 
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL 387

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  +Q    +++    +   +  G ++H+  +K+     V V+  L+ MY KCG + +
Sbjct: 388 MAV--DQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQN 445

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +     V W  +I+ +   G   KA  FF  M    V    IT+ ++L A   
Sbjct: 446 AELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQ 501

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G   +G + +  M  E  + P    Y   V LF     +G
Sbjct: 502 HGAEEDGLKMYSDMLTEKDVIPDWVTY---VTLFRGCADIG 539



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 134/302 (44%), Gaps = 44/302 (14%)

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L+D RN       ++R      +VI  N +++ YAKLG ++ A  +F  +P +DV SWNT
Sbjct: 76  LSDARN-------LLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNT 128

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +++GY Q+G    A+++F  M +  +  PN  T+  ++ +   +G     +++   + K 
Sbjct: 129 IMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKF 188

Query: 363 CLCFDVFVATCLVDMYGKCGR-------------------------------IDDAMSLF 391
               D  V T LVDM  +CG                                +D A+ +F
Sbjct: 189 DSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIF 248

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P    V WN +IS     G+  +AL+    M  +GVRPD  T+ S LTAC+    + 
Sbjct: 249 KSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLE 308

Query: 452 EGQRYFHMMQEEFGIKPHLKHY--GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            G++    +       PH+  Y    MV+L+ + G    A     ++  R   S W  L+
Sbjct: 309 WGKQLHVQVIRNL---PHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS-WTVLI 364

Query: 510 GA 511
           G 
Sbjct: 365 GG 366


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 354/592 (59%), Gaps = 6/592 (1%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           LD+LD   L      P    + +  CA+S N+     +H ++       + F+ N+LI++
Sbjct: 39  LDLLDAGELAPT---PRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHL 95

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A +VFD+M  +D+VSW S+IA Y Q++ P  A G    M +   +P+  T 
Sbjct: 96  YCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTF 155

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            SL        D    R +H   ++  W  EDV +G+A++DMYA+ G+++ A AVF+ L 
Sbjct: 156 ASLLKAAGAHADSGIGRQIHALAVKCDWH-EDVYVGSALLDMYARCGMMDMATAVFDKLD 214

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            K+ +SWN LI+G+A+ G    A+  F  M   N       TY S+  + + +GAL QG 
Sbjct: 215 SKNGVSWNALISGFARKGDGETALMTFAEMLR-NGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
            +HA +IK+      F    L+DMY K G + DA  +F +V     V WN +++    +G
Sbjct: 274 WVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYG 333

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +A++ F +M   G+  + +TF+ +LTACSH GLV EG+RYF MM+E + ++P + H+
Sbjct: 334 LGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHF 392

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             +V L GRAG L  A  FI  MP+ P A++WGALL ACR+H N ++G  A+D +FE+D 
Sbjct: 393 VTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDP 452

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G  VL+ NIYA+ G+W+    VR + +  G+KK P  S +E+ N V +F   + THP
Sbjct: 453 DDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHP 512

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + E+IY     ++ K++  GYVPD  +VL  V++ E+E  L  HSE+LA+AF +I  P  
Sbjct: 513 RAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAG 572

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + I+I KN+R+CGDCH+  K+IS++  REI+VRD+NRFHHF +G CSC DYW
Sbjct: 573 ATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 204/383 (53%), Gaps = 3/383 (0%)

Query: 31  FYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           ++TF       +NL D +K+H  +    F  D F+  SL+H+YC+ G    ARK+FD+M 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            +D  SW ++I+GY Q+    EA+ +L  M       +  T AS+L       +   G  
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH   VK     +++V + L++MYA+ GMM  A  VFD++  ++ VSWN++I+ + +  D
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
             TA   F  M + G +    T  S+ S +A+L      + VH  +++    M     GN
Sbjct: 234 GETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMT-AFAGN 292

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK G +  A  VF+ +  KD+++WNT++T +AQ GL  EA+  F+ M +   I 
Sbjct: 293 TLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSG-IY 351

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            NQ T++ IL A SH G +++G +    + +  L  ++     +V + G+ G ++ A+  
Sbjct: 352 LNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVF 411

Query: 391 FYQVP-RSSSVPWNAIISCHGIH 412
            +++P   ++  W A+++   +H
Sbjct: 412 IFKMPIEPTAAVWGALLAACRMH 434


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/691 (36%), Positives = 398/691 (57%), Gaps = 20/691 (2%)

Query: 28  RPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVAR 83
           RPD +TFP VLK C  L    +G+  H + ++LG    DV+   SLL  Y R GL + A 
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAE 164

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR--LEGVSMDPITVASILPVCAR 141
           ++FD MP RD  +WN+M+ GY  +G    AL    EM   LE V  D + + + L  C  
Sbjct: 165 RVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE-VQHDGVGIIAALAACCL 223

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              ++ G  +H Y+++HG+E ++ V  ++++MY K G +  A  VF  M  R VV+WN +
Sbjct: 224 ESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCM 283

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y  +  P  A   F  M+  G Q +++T ++L +  AQ       RSVHG+I RR  
Sbjct: 284 IGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRR-Q 342

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F+  V++  A+++MY+K+G + S+  VF  +  K ++SWN +I  Y    +  EAI +F 
Sbjct: 343 FLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLF- 401

Query: 322 MMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
            ++  N+ + P+  T  +++PA+  +G LRQ  ++H+ +I+     +  +   ++ MY +
Sbjct: 402 -LDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYAR 460

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG +  +  +F ++     + WN +I  + IHGQG  AL  F +M   G+RP+  TFVS+
Sbjct: 461 CGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSV 520

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           LTACS SGL  EG   F+ MQ ++G+ P ++HYGCM DL GRAG L     FI+NMP+ P
Sbjct: 521 LTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDP 580

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDS-----ENVGYYVLMSNIYANVGKWEGV 555
              +WG+LL A R   ++++   A++R+F+++      +N G YVL+S++YA+ G+W+ V
Sbjct: 581 TFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDV 640

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
           + ++SL  ++GL++T   S +E++     F  G+ THP+ + I +    L+ K   +G +
Sbjct: 641 ERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKMIQEVSNFLSGK---IGEM 697

Query: 616 PDKSFVLQDVEEDEKEHI-LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
            D          D +       HS RLA+ FG+IS+  ++PI + KN+R+C DCH+  K 
Sbjct: 698 RDPMNQSDPTSLDSRRTTEPNKHSVRLAVVFGLISTEARTPILVKKNVRICNDCHHALKL 757

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ + R I+V D+N +H F DG C CGDYW
Sbjct: 758 ISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 170/345 (49%), Gaps = 2/345 (0%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           + +L+  +A  G M  A         RD    N +I     +  P  A   +  M  AG 
Sbjct: 45  TKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGA 104

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD  T   +    A+L      R+ H   +R G    DV  GN+++  YA+LG+++ A 
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAE 164

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+G+P +DV++WN+++ GY  NGL + A+  F+ M E  E+  +    ++ L A    
Sbjct: 165 RVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLE 224

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            AL QG ++HA VI++ +  DV V T ++DMY KCG I  A  +F  +P  + V WN +I
Sbjct: 225 SALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMI 284

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             + ++ + ++A + F QM  EG + + +T ++LL AC+ +     G R  H        
Sbjct: 285 GGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYG-RSVHGYITRRQF 343

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            PH+     +++++ + G +  +      M  +   S W  ++ A
Sbjct: 344 LPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVS-WNNMIAA 387


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 370/601 (61%), Gaps = 7/601 (1%)

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           N+   L +LD +    +  D      +L  C     +  G L+H +++      +L + N
Sbjct: 71  NSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKN 130

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ---SNDPITAHGFFTTMQQAG 225
           +++ MYAK G +  A +VFD+M  +DVV+W S+I  Y Q   ++   TA   F  M + G
Sbjct: 131 SILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDG 190

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+   L SL      L  C + + +HG   + G F E+V +G+++VDMYA+ G +  +
Sbjct: 191 LRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYG-FQENVFVGSSLVDMYARCGELRES 249

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF+ L  K+ +SWN LI+G+A+ G   EA+ +F  M+        + TY ++L + S 
Sbjct: 250 RLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQR-EGFGATEFTYSALLCSSST 308

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            G+L QG  +HA ++K+      +V   L+ MY K G I DA  +F ++ +   V  N++
Sbjct: 309 TGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSM 368

Query: 406 ISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +  +  HG G +A+  F +M L   + P+ ITF+S+LTACSH+GL+ EG  YF +M++ +
Sbjct: 369 LIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-Y 427

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           G++P L HY  +VDLFGRAG L  A +FI+ MP+ P+A+IWGALLGA ++H N E+GA A
Sbjct: 428 GLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYA 487

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           + ++ E+D    G + L+SNIYA+ G+W+ V +VR   +D GLKK P  S +E+ N V I
Sbjct: 488 AQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHI 547

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F   + +HP+  K+Y+   NL  K+K +GYVPD S V   V++ EKE  L  HSE+LA+A
Sbjct: 548 FSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALA 607

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           F ++++ P S I+I KN+RVCGDCH+  K++S + +REIIVRD+NRFHHF+DG CSC DY
Sbjct: 608 FALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDY 667

Query: 705 W 705
           W
Sbjct: 668 W 668



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 213/393 (54%), Gaps = 8/393 (2%)

Query: 27  LRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L PD   +  +LK C     L  GK +H  ++   F  D+ +  S+L MY + G   +AR
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSG---NAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           ++FD+M V+D  +W +MI+GY Q G   +A  AL +  EM  +G+  +   ++S++  C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
              + + G  IH    K+G + N+FV ++L++MYA+ G +R +  VFD++  ++ VSWN+
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I+ + +  +   A G F  MQ+ G      T  +L    +        + +H  +M+ G
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
             +    +GN ++ MYAK G I  A  VF+ L   DV+S N+++ GYAQ+GL  EA+E+F
Sbjct: 327 KKLVGY-VGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELF 385

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M    EI PN  T++S+L A SH G L +G+     + K  L   +   T +VD++G+
Sbjct: 386 EEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGR 445

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            G +D A S   ++P   ++  W A++    +H
Sbjct: 446 AGLLDQAKSFIEEMPIEPNATIWGALLGASKMH 478



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 22/370 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQF--TLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVL 55
           MI+ Y + G  S A      F   +  GLRP+ +    ++K C  L   VDGK+IH    
Sbjct: 163 MITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCW 222

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           K GF+ +VFV +SL+ MY R G    +R +FD++  ++  SWNA+ISG+ + G   EAL 
Sbjct: 223 KYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALG 282

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  +M+ EG      T +++L   + + ++  G  +H +++K G +   +V N L++MYA
Sbjct: 283 LFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYA 342

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLV 234
           K G +  A +VFD++++ DVVS NS++  Y Q      A   F  M     I+P+ +T +
Sbjct: 343 KSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFL 402

Query: 235 SLTSIVAQLNDCRNS----RSVHGFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVF 289
           S+      L  C ++      ++ F + + + +E  +     VVD++ + G+++ A +  
Sbjct: 403 SV------LTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFI 456

Query: 290 EGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YS 344
           E +P++ +   W  L+     +          Q + E +   P   T +S + A    + 
Sbjct: 457 EEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWK 516

Query: 345 HVGALRQGIK 354
            V  +R+ +K
Sbjct: 517 DVAKVRKEMK 526


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/756 (36%), Positives = 422/756 (55%), Gaps = 52/756 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT-----------LTSGL----RPDF-------------- 31
           +++ Y RCGRL+ A++ F   +           L S L    R D               
Sbjct: 100 LLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHP 159

Query: 32  ---YTFPPVLKACRNLVD-------GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLA 79
              +T   VL+A  +L         G++ H   LK G       F   +LL MY R GL 
Sbjct: 160 LTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLV 219

Query: 80  NVARKLFDD-MPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
             A++LF    P R D  +WN M+S   QSG   EA+  L +M   GV  D +T AS LP
Sbjct: 220 ADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALP 279

Query: 138 VCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RD 194
            C+R + +  G  +H Y++K   L  N FV++ L++MYA    +  A +VFD + +  + 
Sbjct: 280 ACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQ 339

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +  WN++I  Y Q+     A   F  M+ +AG  P   T+ S+    A+        +VH
Sbjct: 340 LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVH 399

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G++++RG    +  + NA++DMYA+LG  + A  +F  + + DV+SWNTLITG    G  
Sbjct: 400 GYVVKRG-MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 458

Query: 314 SEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           ++A ++ + M++  E  + PN  T +++LP  + + A  +G +IH   +++ L  DV V 
Sbjct: 459 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 518

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           + LVDMY KCG +  + ++F ++PR +++ WN +I  +G+HG G +A   F +M   G  
Sbjct: 519 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 578

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           RP+ +TF++ L ACSHSG+V  G + FH M+ + G++P      C+VD+ GRAG L  A+
Sbjct: 579 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 491 NFIQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             + +M       S W  +LGACR+H N+ LG +A +RL E++ E   +YVL+ NIY+  
Sbjct: 639 AMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W    EVRS  R RG+ K PG S IEV+  +  F  G   HP  E+++  +  L  +M
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 758

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
            + GY PD S VL D+++ +K  +L  HSE+LAIAFG++ + P + I++ KNLRVC DCH
Sbjct: 759 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 818

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              KF+S++  REI++RD  RFHHF++G CSCGDYW
Sbjct: 819 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 252/565 (44%), Gaps = 25/565 (4%)

Query: 30  DFYTFPPVLKACRNLVDGKK---IHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D    PP +K+   L D +    IH + L+ G        VA +LL  Y R G    A +
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 85  LFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC--- 139
           +F  +     D+ S+N++IS  C       AL  L  M   G  +   T+ S+L      
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 140 -ARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERD 194
            A +  +  G   H + +K+GL      F  N L++MYA+ G++  A R+F        D
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGD 235

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+WN++++   QS     A      M   G++PD +T  S     ++L      R +H 
Sbjct: 236 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 295

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGL 312
           ++++      +  + +A+VDMYA    +  A  VF+ +P   K +  WN +I GYAQ G+
Sbjct: 296 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EA+ +F  ME      P + T  S+LPA +   A      +H  V+K  +  + FV  
Sbjct: 356 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 415

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDE-G 429
            L+DMY + G+ D A  +F  V     V WN +I+   + G    A    R+M  L+E G
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V P+ IT ++LL  C+     + G+   H       +   +     +VD++ + G L ++
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKE-IHGYAVRHALDTDVAVGSALVDMYAKCGCLALS 534

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA-- 547
                 +P R +   W  L+ A  +HG      V  DR+             M+ + A  
Sbjct: 535 RAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACS 593

Query: 548 NVGKWE-GVDEVRSLARDRGLKKTP 571
           + G  + G+    ++ RD G++ TP
Sbjct: 594 HSGMVDRGLQLFHAMERDHGVEPTP 618



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 30/298 (10%)

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAK 278
           TM     Q D   L       A L D R++R++H   +RRG        + NA++  YA+
Sbjct: 47  TMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYAR 106

Query: 279 LGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI------- 329
            G + +A  VF  +     D +S+N+LI+          A+ +F+  +            
Sbjct: 107 CGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAG 156

Query: 330 -NP-NQGTYVSILPAYSHV----GALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKC 381
            +P    T VS+L A SH+     A+R G + HA  +KN L      F    L+ MY + 
Sbjct: 157 GHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARL 216

Query: 382 GRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           G + DA  LF      R   V WN ++S     G  D+A+     M+  GVRPD +TF S
Sbjct: 217 GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFAS 276

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            L ACS   L+  G+     + ++  +  +      +VD++     +G A      +P
Sbjct: 277 ALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVP 334


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/587 (40%), Positives = 363/587 (61%), Gaps = 7/587 (1%)

Query: 122 LEG--VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           LEG  + +D     ++L  C     +  G ++H ++++     +L ++N L+NMYAK G 
Sbjct: 42  LEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGS 101

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VFD+M ERD V+W ++I+ Y Q + P  A   F  M + G  P+  TL S+   
Sbjct: 102 LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A          +HGF ++ G F  +V +G+A++D+Y + G+++ A  VF+ L  ++ +S
Sbjct: 162 AAAERRGCCGHQLHGFCVKCG-FDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 220

Query: 300 WNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WN LI G+A+     +A+E+FQ M+ E     P+  +Y S+  A S  G L QG  +HA 
Sbjct: 221 WNALIAGHARRCGTEKALELFQGMLREG--FRPSHFSYASLFGACSSTGFLEQGKWVHAY 278

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           +IK+      F    L+DMY K G I DA  +F ++ +   V WN++++ +  HG G++A
Sbjct: 279 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEA 338

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           + +F +M   G+RP+ I+F+S+LTACSHSGL+ EG  Y+ +M+++ GI     HY  +VD
Sbjct: 339 VCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVD 397

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAG L  A  FI+ MP+ P A+IW ALL ACR+H N ELGA A++ +FE+D ++ G 
Sbjct: 398 LLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP 457

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           +V++ NIYA+ G+W     VR   ++ G+KK P  S +E+ N + +F   +  HP+ E+I
Sbjct: 458 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 517

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
             +   + AK+K LGYVPD S V+  V++ E+E  L  HSE++A+AF ++++PP S I I
Sbjct: 518 ARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHI 577

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KN+RVCGDCH+  K  S+   REIIVRD+NRFHHFKDG CSC DYW
Sbjct: 578 KKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 207/383 (54%), Gaps = 6/383 (1%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +LK C   + L  G+ +H  +++  F  D+ +  +LL+MY + G    ARK+FD MP
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  +W  +ISGY Q     +AL + ++M   G S +  T++S++   A       G  
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ 173

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H + VK G + N+ V + L+++Y ++G+M  A  VFD +  R+ VSWN++IA + +   
Sbjct: 174 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCG 233

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M + G +P   +  SL    +        + VH ++++ G  +     GN
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV-AFAGN 292

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK G I+ A  +F+ L  +DV+SWN+L+T YAQ+G  +EA+  F+ M     I 
Sbjct: 293 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGG-IR 351

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN+ +++S+L A SH G L +G   +  + K+ +  + +    +VD+ G+ G ++ A+  
Sbjct: 352 PNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRF 411

Query: 391 FYQVP-RSSSVPWNAIISCHGIH 412
             ++P   ++  W A+++   +H
Sbjct: 412 IEEMPIEPTAAIWKALLNACRMH 434



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 189/378 (50%), Gaps = 38/378 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y +  R  +A+  F Q  L  G  P+ +T   V+KA    R    G ++H   +K 
Sbjct: 123 LISGYSQHDRPFDALVLFNQM-LRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC 181

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V V ++LL +Y R+GL + A+ +FD +  R+  SWNA+I+G+ +     +AL++ 
Sbjct: 182 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELF 241

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG      + AS+   C+ +  +  G  +H Y++K G +   F  N L++MYAK 
Sbjct: 242 QGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 301

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++FD++ +RDVVSWNS++ AY Q      A  +F  M++ GI+P+ ++ +S+ 
Sbjct: 302 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVL 361

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW-----FMEDVIIGNA-----VVDMYAKLGIINSACA 287
           +  +           H  ++  GW       +D I+  A     +VD+  + G +N A  
Sbjct: 362 TACS-----------HSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALR 410

Query: 288 VFEGLPVKDVIS-WNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQ-GTYVSILP 341
             E +P++   + W  L+     +    L + A E VF       E++P+  G +V +  
Sbjct: 411 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVF-------ELDPDDPGPHVILYN 463

Query: 342 AYSHVGALRQGIKIHARV 359
            Y+  G      ++  ++
Sbjct: 464 IYASGGRWNDAARVRKKM 481


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/691 (37%), Positives = 394/691 (57%), Gaps = 51/691 (7%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
            Y+     G+RPD + +P ++K+      G   H  VLKLG   D FV  +++ MY R G
Sbjct: 87  MYEQMQGCGVRPDAFVYPILIKSAG--TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLG 144

Query: 78  LANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
               ARK+FD++P   R    WNAM+SGY +  +  +A  + D                +
Sbjct: 145 PIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD----------------V 188

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           +P                       E N+     ++  YAK   +  A R FD M ER V
Sbjct: 189 MP-----------------------ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV 225

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND-CRNSRSVHG 254
           VSWN++++ Y Q+     A   F  M  AGI+PD  T V++ S  +   D C  +  V  
Sbjct: 226 VSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRT 285

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
              +R     +  +  A++DMYAK G ++SA  +F  +P ++V++WN++I GYAQNG ++
Sbjct: 286 LHQKR--IQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSA 343

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
            AIE+F+ M    ++ P++ T VS++ A  H+GAL  G  +   + +N +   +     +
Sbjct: 344 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAM 403

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           + MY +CG ++DA  +F ++     V +N +IS    HG G +A+N    M + G+ PD 
Sbjct: 404 IFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 463

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TF+ +LTACSH+GL+ EG++ F  +++     P + HY CMVDL GR G L  A   ++
Sbjct: 464 VTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTME 518

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
            MP+ P A ++G+LL A RIH  +ELG +A+++LFE++ +N G ++L+SNIYA+ G+W+ 
Sbjct: 519 RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKD 578

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
           V+ +R   +  G+KKT GWS +E   K+  F   +R+H + + IY  L  L  KM+  GY
Sbjct: 579 VERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGY 638

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
           + DKS VL+DVEE+EKE I+ +HSE+LAI + ++ S   + I++ KNLRVC DCH   K 
Sbjct: 639 IADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKM 698

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS++  R IIVRD+NRFH F DG+CSC DYW
Sbjct: 699 ISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 160/305 (52%), Gaps = 22/305 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-------KKIHCS 53
           M+S Y + G   EA+  F +  + +G+ PD  T+  V+ AC +  D        + +H  
Sbjct: 231 MLSGYAQNGLAEEALRLFDEM-VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
            ++L    + FV  +LL MY +FG  + ARKLF+ MP R+  +WN+MI+GY Q+G +  A
Sbjct: 290 RIQL----NCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 345

Query: 114 LDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           +++  EM   + ++ D +T+ S++  C     +  G  +  ++ ++ ++ ++   N +I 
Sbjct: 346 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 405

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           MY++ G M  A RVF +M  RDVVS+N++I+ +      + A    +TM++ GI+PD +T
Sbjct: 406 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 465

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVFE 290
            + + +  +        R V   I       +D  I +   +VD+  ++G +  A    E
Sbjct: 466 FIGVLTACSHAGLLEEGRKVFESI-------KDPAIDHYACMVDLLGRVGELEDAKRTME 518

Query: 291 GLPVK 295
            +P++
Sbjct: 519 RMPME 523


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 353/573 (61%), Gaps = 3/573 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           AS+L  C     I  G  +H  I + G+ FN  ++  L+N+Y     + +A  +FD++ +
Sbjct: 5   ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R++  WN +I  Y  +     A   +  M+  G+ PD  T   +    + L+     + +
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  ++R G    DV +G A++DMYAK G + SA  VF+ +  +DV+ WN+++  Y+QNG 
Sbjct: 125 HKDVIRSG-LESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E++ + ++M   N + P +GT+V  + A +  G L QG ++H    ++    +  V T
Sbjct: 184 PDESLALCRVMA-FNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKT 242

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+DMY K G ++ A SLF  +     V WNA+I+ + +HG  ++AL+ F++M  + V P
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLP 301

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           DHITFV +L ACSH GL++EG+ +F  M  +F I P ++HY CM+DL G  G L  A+  
Sbjct: 302 DHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKL 361

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I  M V PDA +WGALL +C+IHGN+E+G +A ++L E++ ++ G YV++SN+YA  GKW
Sbjct: 362 IMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKW 421

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           +GV  +R L  ++GLKK+   S IEV NKV  F + + +HPK E IY EL+     MK  
Sbjct: 422 DGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEA 481

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GY P    V  DVE+DEK  +++ HSERLAIAFG+IS+   + + I KNLR+C DCH   
Sbjct: 482 GYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAI 541

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KFIS+ITEREI +RD NR+HHFKDG+CSCGD+W
Sbjct: 542 KFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 214/389 (55%), Gaps = 14/389 (3%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L++C   + +  GK++H  + ++G  ++  +A  L+++YC       A  LFD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R+   WN MI GY  +G    A+ +  +MR  G+  D  T   +L  C+    +  G  
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  +++ GLE ++FV   LI+MYAK G +  A +VFD++ ERDVV WNS++A Y Q+  
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
           P  +      M   G++P   T V   +  A        + +HG+  R G F  +  +  
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHG-FESNDKVKT 242

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A++DMYAK G +N A ++FE L  K V+SWN +ITGYA +G A+EA+++F+ M+   ++ 
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK--GKVL 300

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDD 386
           P+  T+V +L A SH G L +G K+H R + +   F+++      TC++D+ G CGR+++
Sbjct: 301 PDHITFVGVLAACSHGGLLNEG-KMHFRSMIS--DFNIWPTVQHYTCMIDLLGHCGRLEE 357

Query: 387 AMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
           A  L  ++     +  W A++    IHG 
Sbjct: 358 AYKLIMEMRVEPDAGVWGALLHSCKIHGN 386



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 173/366 (47%), Gaps = 38/366 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y   G    A+  +YQ     GL PD +TFP VLKAC  L    +GKKIH  V++ 
Sbjct: 73  MIRGYAWNGPYELAISLYYQMR-DYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRS 131

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV A+L+ MY + G    AR++FD +  RD   WN+M++ Y Q+G   E+L + 
Sbjct: 132 GLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALC 191

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNIL--SGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             M   G  + P     ++ + A +DN L   G  +H Y  +HG E N  V   L++MYA
Sbjct: 192 RVMAFNG--LKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYA 249

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A  +F+ + E+ VVSWN++I  Y        A   F  M +  + PD +T V 
Sbjct: 250 KSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVG 308

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIINS 284
           + +  +           HG ++  G      +I +            ++D+    G +  
Sbjct: 309 VLAACS-----------HGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEE 357

Query: 285 ACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINPNQ-GTYVSILP 341
           A  +   + V+ D   W  L+     +G     +E+ ++ +E+  E+ P+  G YV +  
Sbjct: 358 AYKLIMEMRVEPDAGVWGALLHSCKIHG----NVEMGELALEKLVELEPDDGGNYVILSN 413

Query: 342 AYSHVG 347
            Y+  G
Sbjct: 414 MYAQAG 419



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y S+L +     A+  G ++HAR+ +  + F+  +AT LV++Y  C  + +A  LF ++ 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           + +   WN +I  +  +G  + A++ + QM D G+ PD  TF  +L ACS    + EG++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
             H      G++  +     ++D++ + G +  A      +  R D   W ++L     +
Sbjct: 124 -IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDER-DVVCWNSMLATYSQN 181

Query: 516 GN 517
           G 
Sbjct: 182 GQ 183


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/756 (36%), Positives = 422/756 (55%), Gaps = 52/756 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT-----------LTSGL----RPDF-------------- 31
           +++ Y RCGRL+ A++ F   +           L S L    R D               
Sbjct: 100 LLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHP 159

Query: 32  ---YTFPPVLKACRNLVD-------GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLA 79
              +T   VL+A  +L         G++ H   LK G       F   +LL MY R GL 
Sbjct: 160 LTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLV 219

Query: 80  NVARKLFDD-MPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
             A++LF    P R D  +WN M+S   QSG   EA+  L +M   GV  D +T AS LP
Sbjct: 220 ADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALP 279

Query: 138 VCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RD 194
            C+R + +  G  +H Y++K   L  N FV++ L++MYA    +  A +VFD + +  + 
Sbjct: 280 ACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQ 339

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +  WN++I  Y Q+     A   F  M+ +AG  P   T+ S+    A+        +VH
Sbjct: 340 LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVH 399

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G++++RG    +  + NA++DMYA+LG  + A  +F  + + DV+SWNTLITG    G  
Sbjct: 400 GYVVKRG-MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHV 458

Query: 314 SEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           ++A ++ + M++  E  + PN  T +++LP  + + A  +G +IH   +++ L  DV V 
Sbjct: 459 ADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG 518

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           + LVDMY KCG +  + ++F ++PR +++ WN +I  +G+HG G +A   F +M   G  
Sbjct: 519 SALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEA 578

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           RP+ +TF++ L ACSHSG+V  G + FH M+ + G++P      C+VD+ GRAG L  A+
Sbjct: 579 RPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAY 638

Query: 491 NFIQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             + +M       S W  +LGACR+H N+ LG +A +RL E++ E   +YVL+ NIY+  
Sbjct: 639 AMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAA 698

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W    EVRS  R RG+ K PG S IEV+  +  F  G   HP  E+++  +  L  +M
Sbjct: 699 GQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEM 758

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
            + GY PD S VL D+++ +K  +L  HSE+LAIAFG++ + P + I++ KNLRVC DCH
Sbjct: 759 VARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCH 818

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              KF+S++  REI++RD  RFHHF++G CSCGDYW
Sbjct: 819 EAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 252/565 (44%), Gaps = 25/565 (4%)

Query: 30  DFYTFPPVLKACRNLVDGKK---IHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARK 84
           D    PP +K+   L D +    IH + L+ G        VA +LL  Y R G    A +
Sbjct: 56  DHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALE 115

Query: 85  LFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC--- 139
           +F  +     D+ S+N++IS  C       AL  L  M   G  +   T+ S+L      
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 140 -ARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERD 194
            A +  +  G   H + +K+GL      F  N L++MYA+ G++  A R+F        D
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGD 235

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+WN++++   QS     A      M   G++PD +T  S     ++L      R +H 
Sbjct: 236 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 295

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGL 312
           ++++      +  + +A+VDMYA    +  A  VF+ +P   K +  WN +I GYAQ G+
Sbjct: 296 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EA+ +F  ME      P + T  S+LPA +   A      +H  V+K  +  + FV  
Sbjct: 356 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 415

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDE-G 429
            L+DMY + G+ D A  +F  V     V WN +I+   + G    A    R+M  L+E G
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V P+ IT ++LL  C+     + G+   H       +   +     +VD++ + G L ++
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKE-IHGYAVRHALDTDVAVGSALVDMYAKCGCLALS 534

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA-- 547
                 +P R +   W  L+ A  +HG      V  DR+             M+ + A  
Sbjct: 535 RAVFDRLP-RRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACS 593

Query: 548 NVGKWE-GVDEVRSLARDRGLKKTP 571
           + G  + G+    ++ RD G++ TP
Sbjct: 594 HSGMVDRGLQLFHAMERDHGVEPTP 618



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 30/298 (10%)

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAK 278
           TM     Q D   L       A L D R++R++H   +RRG        + NA++  YA+
Sbjct: 47  TMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYAR 106

Query: 279 LGIINSACAVFEGL--PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI------- 329
            G + +A  VF  +     D +S+N+LI+          A+ +F+  +            
Sbjct: 107 CGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHALAALRAMLAG 156

Query: 330 -NP-NQGTYVSILPAYSHV----GALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKC 381
            +P    T VS+L A SH+     A+R G + HA  +KN L      F    L+ MY + 
Sbjct: 157 GHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARL 216

Query: 382 GRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           G + DA  LF      R   V WN ++S     G  D+A+     M+  GVRPD +TF S
Sbjct: 217 GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFAS 276

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            L ACS   L+  G+     + ++  +  +      +VD++     +G A      +P
Sbjct: 277 ALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVP 334


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 358/590 (60%), Gaps = 8/590 (1%)

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           ++ M    +S D IT + ++  C     +    L+H ++  +G E   F+ N LINMY K
Sbjct: 4   MEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVK 63

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           FG++  A  +FD+M +R+VVSW ++I+AY  SN    A  F   M + G++P++ T    
Sbjct: 64  FGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY--- 120

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           +S++   +   N R +HG I++ G    DV + +A++D Y+KLG  + A  VF  +   D
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVG-LESDVFVRSALIDTYSKLGEQHDALNVFNEMITGD 179

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++ WN++I G+AQN    E + +++ M+  + +  +Q T  S+L A + +  L  G ++H
Sbjct: 180 LVVWNSIIGGFAQNSDGDETLHLYKRMKRADFV-ADQSTLTSVLRACTGLALLELGRQVH 238

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-PWNAIISCHGIHGQG 415
             V+K     D+ +   L+DMY KCG ++DA  LF ++     V  W+ +I+    +G  
Sbjct: 239 VHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFS 296

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             AL  F  M  +G +P++IT + +L ACSH+GLV++G  YF  M+E FGI P  +HYGC
Sbjct: 297 ADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGC 356

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL GRAG L  A   I  M   PDA  W  LLGACR+H N++L   A+  + ++D  +
Sbjct: 357 IIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPAD 416

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G Y+L+SNIYAN  KWE V EVR   R RG+KK PG S IEV+ +V  F  G+ +HP+ 
Sbjct: 417 AGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRI 476

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           E+I  EL  L  ++  LGYVPD +FVLQD+E ++ E  L  HSE+LAI FG++S P +  
Sbjct: 477 EEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKT 536

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I I KNLR+CGDCH + K +SQ+  R I++RD  R+HHF+ G+CSCGDYW
Sbjct: 537 IHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 221/409 (54%), Gaps = 19/409 (4%)

Query: 27  LRPDFYTFPPVLKACRNLVDG-----KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           L  D  T+  ++K C  LV G     + +H  V   G+E   F+  +L++MY +FGL + 
Sbjct: 12  LSADAITYSELIKCC--LVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDE 69

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR LFD+MP R+  SW  MIS Y  S    +ALD L  M  EGV  +  T +S+L  C  
Sbjct: 70  ARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC-- 127

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
            D +L+   +H  I+K GLE ++FV + LI+ Y+K G    AL VF++M+  D+V WNSI
Sbjct: 128 -DGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSI 186

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  + Q++D       +  M++A    D  TL S+      L      R VH  +++   
Sbjct: 187 IGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--- 243

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVF 320
           + +D+I+ NA++DMY K G +  A  +F  +   KDVISW+T+I G AQNG +++A+++F
Sbjct: 244 YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLF 303

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMY 378
           + M+      PN  T + +L A SH G +  G   + + +K     D       C++D+ 
Sbjct: 304 EAMKSKGP-KPNYITILGVLFACSHAGLVNDGW-YYFQSMKEHFGIDPGREHYGCIIDLL 361

Query: 379 GKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQML 426
           G+ G++D+A+ L +++     +V W  ++    +H   D A+   +++L
Sbjct: 362 GRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEIL 410



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 180/359 (50%), Gaps = 31/359 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y       +A+D F    L  G+RP+ YT+  VL+AC  L++ +++H S+LK+G E
Sbjct: 88  MISAYSNSNLNHKALD-FLILMLREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLE 146

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFV ++L+  Y + G  + A  +F++M   D   WN++I G+ Q+ +  E L +   M
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           +      D  T+ S+L  C     +  G  +H++++K+  + +L ++N L++MY K G +
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSL 264

Query: 181 RHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
             A  +F +MM E+DV+SW+++IA   Q+     A   F  M+  G +P+ +T      I
Sbjct: 265 EDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYIT------I 318

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGIINSACAV 288
           +  L  C      H  ++  GW+    +  +            ++D+  + G ++ A  +
Sbjct: 319 LGVLFACS-----HAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKL 373

Query: 289 FEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSH 345
              +  + D ++W  L+     +     AI      +E  +++P + GTY+ +   Y++
Sbjct: 374 IHEMNHEPDAVTWRILLGACRVHKNVDLAIYA---AKEILKLDPADAGTYILLSNIYAN 429


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/701 (36%), Positives = 398/701 (56%), Gaps = 23/701 (3%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           LT G       + P+L  C    +L   + +H  + K G   D+FVA SL++ Y R   A
Sbjct: 70  LTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAA 129

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR+LFD MP R+  +W A+++GY  +      L++  EM   G      T+ + L  C
Sbjct: 130 RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
             S ++  G  +H Y +K+G E    + N+L ++YAK G +  ALR F ++ E++V++W 
Sbjct: 190 LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWT 249

Query: 200 SIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           ++I+A  +  + +      F  M   G+ P+  TL S+ S+     D    + V  F  +
Sbjct: 250 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 309

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ--------- 309
            G    ++ + N+ + +Y + G  + A  +FE +    +I+WN +I+GYAQ         
Sbjct: 310 IGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368

Query: 310 --NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
                  +A+ +F+ ++  + + P+  T+ SIL   S + AL QG +IHA+ IK+    D
Sbjct: 369 QARSRGFQALTIFRDLKR-SVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSD 427

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V V + LV+MY KCG I DA   F ++P  + V W ++IS +  HGQ  +A+  F +M  
Sbjct: 428 VVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRL 487

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            GVRP+ ITFVSLL+ACS++GLV E + YF MM++E+ I+P + HYGCM+D+F R G + 
Sbjct: 488 AGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVE 547

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A +FI+     P+ +IW +L+  CR HGNMEL   A+D+L E+  + +  Y+L+ N+Y 
Sbjct: 548 DAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYI 607

Query: 548 NVGKWEGVDEVRSLAR--DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           +  +W+ V  VR L +  D G+ +   W  I + +KV  F   +RTHP+  ++Y  L NL
Sbjct: 608 STERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRTHPQATELYQLLENL 665

Query: 606 TAKMKSLGYVPDKSFVLQDVEEDEKEHI--LTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
             K K++GY P ++  L D E+DEK     L  HSERLA+A G++ +PP + +++ KN+ 
Sbjct: 666 LEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNIT 725

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           +C DCH+  K  S +  REIIVRDS R H FKDG CSCGD+
Sbjct: 726 MCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 203/441 (46%), Gaps = 48/441 (10%)

Query: 108 GNAVEA----LDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           G  +EA    LD+ + M +  EG ++       +L  C  + ++ +   +H ++ K G  
Sbjct: 51  GGGMEAPLRPLDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGAS 110

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV+ +L+N Y +    R A R+FD M ER+VV+W +++  Y  ++ P      F  M
Sbjct: 111 ADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEM 170

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLG 280
            + G  P   TL +  +      D    + VHG+ ++ G   E +  +GN++  +YAKLG
Sbjct: 171 LEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYG--AESITSMGNSLCSLYAKLG 228

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN---------- 330
            ++SA   F  +P K+VI+W T+I+  A++             EEC E+           
Sbjct: 229 SLDSALRAFWRIPEKNVITWTTMISACAED-------------EECVELGMSLFIDMLMD 275

Query: 331 ---PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
              PN+ T  S++        L  G ++ A   K     ++ V    + +Y + G  D+A
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEA 335

Query: 388 MSLFYQVPRSSSVPWNAIISCHG-----------IHGQGDKALNFFRQMLDEGVRPDHIT 436
           M LF Q+  +S + WNA+IS +               +G +AL  FR +    ++PD  T
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F S+L+ CS    + +G++  H    + G    +     +V+++ + G +  A+     M
Sbjct: 396 FSSILSVCSAMMALEQGEQ-IHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEM 454

Query: 497 PVRPDASIWGALLGACRIHGN 517
           P R   + W +++     HG 
Sbjct: 455 PTRTFVT-WTSMISGYSQHGQ 474


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/679 (36%), Positives = 390/679 (57%), Gaps = 11/679 (1%)

Query: 37  VLKAC--RNLVD-GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+ C  + L D G ++HC +LK G   ++  +  L+ MYC+     +A K+FD MP R+
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERN 71

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SW+A++SG+  +G+   +L +  EM  +G+  +  T ++ L  C   + +  GL IH 
Sbjct: 72  VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           + +K G E  + V N+L++MY+K G +  A +VF ++++R ++SWN++IA +  +     
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSK 191

Query: 214 AHGFFTTMQQAGIQ--PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-EDVIIGN 270
           A   F  MQ+A I+  PD  TL SL    +        + +HGF++R G+       I  
Sbjct: 192 ALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITG 251

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           ++VD+Y K G + SA   F+ +  K +ISW++LI GYAQ G   EA+ +F+ ++E N   
Sbjct: 252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS-Q 310

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            +     SI+  ++    LRQG ++ A  +K     +  V   +VDMY KCG +D+A   
Sbjct: 311 IDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKC 370

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++     + W  +I+ +G HG G K++  F +ML   + PD + ++++L+ACSHSG++
Sbjct: 371 FAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMI 430

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG+  F  + E  GIKP ++HY C+VDL GRAG L  A + I  MP++P+  IW  LL 
Sbjct: 431 KEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 490

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            CR+HG++ELG      L  +D++N   YV+MSN+Y   G W      R L   +GLKK 
Sbjct: 491 LCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKE 550

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDE 629
            G S +E+  +V  F +G  +HP    I + L+    +++  LGYV      L D++++ 
Sbjct: 551 AGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDES 610

Query: 630 KEHILTSHSERLAIAFGIIS---SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           KE  L +HSE+LAI   + +   +     I++FKNLRVC DCH + K +S+IT+   +VR
Sbjct: 611 KEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVR 670

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D+ RFH F+DG CSCGDYW
Sbjct: 671 DAVRFHSFEDGCCSCGDYW 689



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 229/422 (54%), Gaps = 12/422 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S +V  G L  ++  F +     G+ P+ +TF   LKAC     L  G +IH   LK+
Sbjct: 78  LMSGHVLNGDLKGSLSLFSEMG-RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKI 136

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE  V V  SL+ MY + G  N A K+F  +  R   SWNAMI+G+  +G   +ALD  
Sbjct: 137 GFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTF 196

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLE--FNLFVSNNLINM 173
             M+   +   P   T+ S+L  C+ +  I +G  IH ++V+ G     +  ++ +L+++
Sbjct: 197 GMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDL 256

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A + FDQ+ E+ ++SW+S+I  Y Q  + + A G F  +Q+   Q D   L
Sbjct: 257 YVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFAL 316

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+  + A     R  + +    ++    +E  ++ N+VVDMY K G+++ A   F  + 
Sbjct: 317 SSIIGVFADFALLRQGKQMQALAVKLPSGLETSVL-NSVVDMYLKCGLVDEAEKCFAEMQ 375

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           +KDVISW  +ITGY ++GL  +++ +F  M   N I P++  Y+++L A SH G +++G 
Sbjct: 376 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN-IEPDEVCYLAVLSACSHSGMIKEGE 434

Query: 354 KIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
           ++ +++++ + +   V    C+VD+ G+ GR+ +A  L   +P   +V  W  ++S   +
Sbjct: 435 ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494

Query: 412 HG 413
           HG
Sbjct: 495 HG 496



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 207/409 (50%), Gaps = 11/409 (2%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + SIL VC R      G  +H Y++K G   NL  SN LI+MY K      A +VFD M 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER+VVSW+++++ +  + D   +   F+ M + GI P+  T  +       LN       
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ 128

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HGF ++ G+ M  V +GN++VDMY+K G IN A  VF  +  + +ISWN +I G+   G
Sbjct: 129 IHGFCLKIGFEMM-VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187

Query: 312 LASEAIEVFQMMEECN-EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-C-FDV 368
             S+A++ F MM+E N +  P++ T  S+L A S  G +  G +IH  ++++   C    
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 247

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            +   LVD+Y KCG +  A   F Q+   + + W+++I  +   G+  +A+  F+++ + 
Sbjct: 248 TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQEL 307

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHM-MQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             + D     S++   +   L+ +G++   + ++   G++  +     +VD++ + G + 
Sbjct: 308 NSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV--LNSVVDMYLKCGLVD 365

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
            A      M ++ D   W  ++     HG   LG  +    +E+   N+
Sbjct: 366 EAEKCFAEMQLK-DVISWTVVITGYGKHG---LGKKSVRIFYEMLRHNI 410



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 9/354 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI+ +V  G  S+A+D F      +   RPD +T   +LKAC +   +  GK+IH  +++
Sbjct: 179 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 238

Query: 57  LGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            GF       +  SL+ +Y + G    ARK FD +  +   SW+++I GY Q G  VEA+
Sbjct: 239 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 298

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +   ++     +D   ++SI+ V A    +  G  +    VK        V N++++MY
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 358

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G++  A + F +M  +DV+SW  +I  Y +      +   F  M +  I+PD +  +
Sbjct: 359 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 418

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ S  +     +    +   ++        V     VVD+  + G +  A  + + +P+
Sbjct: 419 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 478

Query: 295 K-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           K +V  W TL++    +G      EV +++   +  NP    YV +   Y   G
Sbjct: 479 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNP--ANYVMMSNLYGQAG 530


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/678 (37%), Positives = 390/678 (57%), Gaps = 8/678 (1%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +  +L  CR L + +K+H  +     + + F+   L+  Y + G  + A+  F  + + +
Sbjct: 38  YASLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHN 97

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           + SWN +++ Y Q+G+   A  +   M  +GV  + +T+++ L  C  + N+  G  ++ 
Sbjct: 98  AHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNE 157

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            I    LE +  V ++LI MY +   +  A R FD+  E+DVV W ++I+AY  +     
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A      M   GI+  L T VSL    A   D RN  + H      G      ++   +V
Sbjct: 218 ALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLV 277

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           ++Y K G ++ A  V + +PV+  +SW  +I  YAQNG A+EAI +FQ M+      P+ 
Sbjct: 278 NLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMD-LEGAEPSD 336

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMYGKCGRIDDAMSLF 391
            T +S++ + + +G L  G +IHAR I++   F   + +   ++ MYGKCG ++ A  +F
Sbjct: 337 ITLISVVDSCAVLGTLSLGKRIHAR-IRSSPSFSQSLMLLNAVITMYGKCGNLELAREVF 395

Query: 392 YQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVRPDHITFVSLLTACSHSG 448
             VP    S V W A+I  +  +G G++A+  F++ML D G  P+ +TF+S+L ACSH G
Sbjct: 396 ECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLG 455

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI-QNMPVRPDASIWGA 507
            + +   +F  M  +FG+ P   HY C+VDL GRAG LG A   + ++     D   W A
Sbjct: 456 QLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIA 515

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
            L AC+++G++E    A+ R+ E++ ENV   VL+SN+YA  G+   V  +R+  +  G+
Sbjct: 516 FLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGV 575

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           KK  G S IE+NN+V  F   + +HP+  +IY EL  L  ++K  GYVPD   VL+DV+E
Sbjct: 576 KKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDE 635

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
           ++K  +L  HSERLA+A GIIS+PP + +++ KNLRVC DCH  TKFISQI  R+IIVRD
Sbjct: 636 EKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRD 695

Query: 688 SNRFHHFKDGICSCGDYW 705
           ++RFHHFKDG+CSCGDYW
Sbjct: 696 TSRFHHFKDGVCSCGDYW 713


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/709 (35%), Positives = 385/709 (54%), Gaps = 42/709 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI---HCSVLKL 57
           +I  Y +  +  EA + F Q     G  PD+ TF  +L  C     G +I      ++KL
Sbjct: 115 LIGGYSQLNQFKEAFELFVQMQ-RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL 173

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  + V                                N ++  YC+S      LD+ 
Sbjct: 174 GYDSRLIVG-------------------------------NTLVDSYCKSNR----LDLA 198

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            ++  E   +D  T A++L      D+I+ G  IH +++K    +N+FVSN L++ Y+K 
Sbjct: 199 CQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 258

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++FD+M E+D VS+N II+ Y        A   F  +Q            ++ 
Sbjct: 259 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 318

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI +   D    R +H   +      E +++GN++VDMYAK G    A  +F  L  +  
Sbjct: 319 SIASNTLDWEMGRQIHAQTIVTTADSE-ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 377

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+ Y Q G   E +++F  M + + I  +Q T+ S+L A + + +L  G ++H+
Sbjct: 378 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVI-ADQATFASLLRASASIASLSLGKQLHS 436

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK+    +VF  + L+D+Y KCG I DA+  F ++P  + V WNA+IS +  +G+ + 
Sbjct: 437 FIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEA 496

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F++M+  G++PD ++F+ +L+ACSHSGLV EG  +F+ M + + + P  +HY  +V
Sbjct: 497 TLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVV 556

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D+  R+G    A   +  MP+ PD  +W ++L ACRIH N EL   A+D+LF ++   + 
Sbjct: 557 DMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA 616

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  G+WE V +V    RDRG+KK P +S +E+ ++  +F   +R HP+ E
Sbjct: 617 APYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIE 676

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  ++  LT  M+ LGY PD S  L + +E  K   L  HSERLAIAF +IS+P  SPI
Sbjct: 677 EIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPI 736

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K IS+I  REI VRDS RFHHF+DG CSCGD+W
Sbjct: 737 LVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 178/422 (42%), Gaps = 68/422 (16%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N   +N +I+ Y K G +  A ++FD M+ER  V+W  +I  Y Q N    A   F  MQ
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G +PD +T V+L S             V   I++ G +   +I+GN +VD Y K   +
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRL 195

Query: 283 NSACAVFEGLP------------------------------VKDVISWNTLITG-----Y 307
           + AC +F+ +P                              +K    WN  ++      Y
Sbjct: 196 DLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFY 255

Query: 308 AQNGLASEAIEVFQMMEECNEINPN------------------------------QGTYV 337
           +++    +A ++F  M E + ++ N                              Q  + 
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++L   S+      G +IHA+ I      ++ V   LVDMY KCG+ ++A  +F  +   
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR 375

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           S+VPW A+IS +   G  ++ L  F +M    V  D  TF SLL A +    +S G++  
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-L 434

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H    + G   ++     ++D++ + G +  A    Q MP R   S W A++ A   +G 
Sbjct: 435 HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISAYAQNGE 493

Query: 518 ME 519
            E
Sbjct: 494 AE 495


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/697 (38%), Positives = 404/697 (57%), Gaps = 17/697 (2%)

Query: 21  FTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGL 78
           FTL S LR   +  P    A R    G++ H   LK G       F   +LL MY R GL
Sbjct: 11  FTLVSVLRAVSH-LPAAAAAVRL---GREAHAFALKNGLLHGHQRFAFNALLSMYARLGL 66

Query: 79  ANVARKLFDD-MPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
              A++LF    P R D  +WN M+S   QSG   EA+  L +M   GV  D +T AS L
Sbjct: 67  VADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASAL 126

Query: 137 PVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--R 193
           P C+R + +  G  +H Y++K   L  N FV++ L++MYA    +  A +VFD + +  +
Sbjct: 127 PACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGK 186

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            +  WN++I  Y Q+     A   F  M+ +AG  P   T+ S+    A+        +V
Sbjct: 187 QLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAV 246

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HG++++RG    +  + NA++DMYA+LG  + A  +F  + + DV+SWNTLITG    G 
Sbjct: 247 HGYVVKRG-MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGH 305

Query: 313 ASEAIEVFQMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
            ++A ++ + M++  E  + PN  T +++LP  + + A  +G +IH   +++ L  DV V
Sbjct: 306 VADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAV 365

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG- 429
            + LVDMY KCG +  + ++F ++PR +++ WN +I  +G+HG G +A   F +M   G 
Sbjct: 366 GSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGE 425

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
            RP+ +TF++ L ACSHSG+V  G + FH M+ + G++P      C+VD+ GRAG L  A
Sbjct: 426 ARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEA 485

Query: 490 HNFIQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           +  + +M       S W  +LGACR+H N+ LG +A +RL E++ E   +YVL+ NIY+ 
Sbjct: 486 YAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSA 545

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
            G+W    EVRS  R RG+ K PG S IEV+  +  F  G   HP  E+++  +  L  +
Sbjct: 546 AGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGE 605

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           M + GY PD S VL D+++ +K  +L  HSE+LAIAFG++ + P + I++ KNLRVC DC
Sbjct: 606 MVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDC 665

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H   KF+S++  REI++RD  RFHHF++G CSCGDYW
Sbjct: 666 HEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/403 (36%), Positives = 218/403 (54%), Gaps = 17/403 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVD-GKKIHCSVLKL 57
           M+SV V+ G   EAV   Y   +  G+RPD  TF   L AC    L+D G+++H  V+K 
Sbjct: 90  MVSVLVQSGMFDEAVQTLYDM-VALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD 148

Query: 58  G-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS----WNAMISGYCQSGNAVE 112
                + FVA++L+ MY        AR++FD +P  DSG     WNAMI GY Q+G   E
Sbjct: 149 DELAANSFVASALVDMYATHEQVGKARQVFDMVP--DSGKQLGMWNAMICGYAQAGMDEE 206

Query: 113 ALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
           AL +   M  E G      T+AS+LP CARS+       +H Y+VK G+  N FV N L+
Sbjct: 207 ALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM 266

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ---AGIQP 228
           +MYA+ G    A R+F  +   DVVSWN++I           A      MQQ    G+ P
Sbjct: 267 DMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVP 326

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           + +TL++L    A L      + +HG+ +R      DV +G+A+VDMYAK G +  + AV
Sbjct: 327 NAITLMTLLPGCAILAAPARGKEIHGYAVRHA-LDTDVAVGSALVDMYAKCGCLALSRAV 385

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ LP ++ I+WN LI  Y  +GL  EA  +F  M    E  PN+ T+++ L A SH G 
Sbjct: 386 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 445

Query: 349 LRQGIKI-HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           + +G+++ HA    + +     +  C+VD+ G+ GR+D+A ++
Sbjct: 446 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAM 488


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/686 (36%), Positives = 389/686 (56%), Gaps = 13/686 (1%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   VL  C   R +  GK +H   +KL  + +V V  +L+ MY + G  N A+ +
Sbjct: 287 PDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVI 346

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG--VSMDPITVASILPVCARSD 143
           F     ++  SWN M+ G+  +G+  +  D+L +M   G  +  D +T+ + +PVC    
Sbjct: 347 FKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEES 406

Query: 144 NILSGLLIHLYIVKHGLEF---NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
            + +   +H Y +K   EF   N  V+N  +  YAK G + +A RVF  +  + V SWN+
Sbjct: 407 VLPNLKELHCYSLKQ--EFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNA 464

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I  Y QS+DP  +   +  M+ +G+ PDL T+ SL S  +Q+   +  + VHG I+R  
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIR-N 523

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
               D  +  +++ +Y   G +++A  +F+ +  K ++SWNT++ GY QNG    A+ +F
Sbjct: 524 RLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLF 583

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M     + P + + +S+  A S + +LR G + H   +K  L  + F+A  ++DMY K
Sbjct: 584 RQMV-LYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAK 642

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
            G + ++  +F  +   S   WNA++  +GIHG+  +A+  F +M   G  PD +TF+ +
Sbjct: 643 NGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGV 702

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF-IQNMPVR 499
           LTAC+HSGLV EG  Y   M+  FG+ P LKHY C++D+  RAG L  A     + M   
Sbjct: 703 LTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEE 762

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P   IW  LL +CRIH N+E+G   + +LF  + E    YVL+SN+YA  GKW+ V +VR
Sbjct: 763 PGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVR 822

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              ++  L+K  G S IE+N KV  F  G  +   +E+I      L  ++  +GY PD S
Sbjct: 823 QRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTS 882

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            V  D+ E+EK   L  HSE+LAI +G+I +   + ++++KNLR+C DCHN  K IS++ 
Sbjct: 883 SVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVM 942

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           EREI+VRD+ RFHHFK+G CSCGDYW
Sbjct: 943 EREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 274/539 (50%), Gaps = 16/539 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y R       ++ F +    SGL PD +TFP V+KAC  + +   G  +H  V+K 
Sbjct: 154 VISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKT 213

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVFV+ +L+  Y   G  + A ++F  MP R+  SWN+MI  +  +G + E   +L
Sbjct: 214 RLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLL 273

Query: 118 DEMRLE----GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            +M  +      + D  T+A++LPVCAR   I  G  +H   +K  L+  + V+N L++M
Sbjct: 274 GQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDM 333

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLL 231
           Y+K G +  A  +F     ++VVSWN+++  +  + D          M   G  ++ D +
Sbjct: 334 YSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEV 393

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T+++   +  + +   N + +H + +++ +   + ++ NA V  YAK G ++ A  VF  
Sbjct: 394 TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCS 453

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  K V SWN LI GY+Q+     +++ +  M+    + P+  T  S+L A S + +L+ 
Sbjct: 454 IRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLL-PDLFTVCSLLSACSQIKSLKL 512

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G ++H  +I+N L  D FV   L+ +Y  CG +  A  LF  +   + V WN +++ +  
Sbjct: 513 GKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQ 572

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +G  ++AL+ FRQM+  GV+P  I+ +S+  ACS    +  G R  H    +  ++ +  
Sbjct: 573 NGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG-REAHGYALKCLLEDNAF 631

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
               ++D++ + G +  +      +  R  AS W A++    IHG     A  + +LFE
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVAS-WNAMVMGYGIHGR----AKEAIKLFE 685



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 223/464 (48%), Gaps = 22/464 (4%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+KIH  V +      D  +   ++ MY   G  + +R +FD +  ++   WNA+IS Y 
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 106 QSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           ++      L++  +M  E G+  D  T   ++  CA    +  GL +H  +VK  L  ++
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDV 219

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-- 222
           FVSN L++ Y   G +  ALRVF  M ER++VSWNS+I  +  S++ ++   F    Q  
Sbjct: 220 FVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVF--SDNGLSEECFLLLGQMM 277

Query: 223 ----QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
               +    PD+ TL ++  + A+  +    + VHG  M+     ++V++ NA++DMY+K
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLS-LDKEVVVNNALMDMYSK 336

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYV 337
            G IN A  +F+    K+V+SWNT++ G++  G   +  ++  QM+    ++  ++ T +
Sbjct: 337 CGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTIL 396

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           + +P       L    ++H   +K      +  VA   V  Y KCG +  A  +F  +  
Sbjct: 397 NAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRS 456

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            +   WNA+I  +        +L+ + QM   G+ PD  T  SLL+ACS    +  G+  
Sbjct: 457 KTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEV 516

Query: 457 FHMMQEEFGIKPHLKH----YGCMVDLFGRAGHLGMAHNFIQNM 496
             ++     I+  L+     Y  ++ L+   G L  AH     M
Sbjct: 517 HGLI-----IRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAM 555



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 130/279 (46%), Gaps = 6/279 (2%)

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D +  R +H  +        D ++   V+ MY+  G  + + +VF+ L  K++  WN +
Sbjct: 95  KDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAV 154

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+ Y++N L    +E+F  M   + + P+  T+  ++ A + V  ++ G+ +H  V+K  
Sbjct: 155 ISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTR 214

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DVFV+  LV  YG  G + DA+ +F  +P  + V WN++I     +G  ++      
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 424 QMLDE----GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           QM+++       PD  T  ++L  C+    +  G +  H +  +  +   +     ++D+
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVG-KGVHGLAMKLSLDKEVVVNNALMDM 333

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
           + + G +  A   I  +    +   W  ++G     G++
Sbjct: 334 YSKCGCINDAQ-VIFKLNNNKNVVSWNTMVGGFSAAGDI 371


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/666 (39%), Positives = 395/666 (59%), Gaps = 12/666 (1%)

Query: 47   GKKIHCSVLKLGFE--WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
            G+++H  +++      W + +  +L+++Y +    + AR +F  MP +D+ SWN++ISG 
Sbjct: 373  GQEVHAYLIRNALVDVW-ILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGL 431

Query: 105  CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
              +    EA+     MR  G+     +V S L  CA    I+ G  IH   +K GL+ ++
Sbjct: 432  DHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDV 491

Query: 165  FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI-TAHGFFTTMQQ 223
             VSN L+ +YA+   M    +VF  M E D VSWNS I A   S   +  A  +F  M Q
Sbjct: 492  SVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQ 551

Query: 224  AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            AG +P+ +T +++ S V+ L+     R +H  I++     +D  I N ++  Y K   + 
Sbjct: 552  AGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHS-VADDNAIENTLLAFYGKCEQME 610

Query: 284  SACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILP 341
                +F  +  + D +SWN +I+GY  NG+  +A+  V+ MM++   ++    T  ++L 
Sbjct: 611  DCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLD--DFTLATVLS 668

Query: 342  AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
            A + V  L +G+++HA  I+ CL  +V V + LVDMY KCG+ID A   F  +P  +   
Sbjct: 669  ACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYS 728

Query: 402  WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
            WN++IS +  HG G KAL  F QM   G  PDH+TFV +L+ACSH GLV EG  +F  M 
Sbjct: 729  WNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMG 788

Query: 462  EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NME 519
            E + + P ++H+ CMVDL GRAG +     FI+ MP+ P+A IW  +LGA CR +  N E
Sbjct: 789  EVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTE 848

Query: 520  LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
            LG  A+  L E++  N   YVL+SN++A  GKWE V+E R   R+  +KK  G S + + 
Sbjct: 849  LGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMK 908

Query: 580  NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            + V +F  G++THP+ EKIYD+L+ +  KM+ LGYVP+  + L D+E + KE +L+ HSE
Sbjct: 909  DGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSE 968

Query: 640  RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
            +LAIAF +++   + PI+I KNLRVCGDCH   K+IS I  R+II+RDSNRFHHF  GIC
Sbjct: 969  KLAIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGIC 1027

Query: 700  SCGDYW 705
            SC DYW
Sbjct: 1028 SCQDYW 1033



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 238/442 (53%), Gaps = 23/442 (5%)

Query: 34  FPPV------LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           FPP+       +    + D  ++H  + K G   DVF   +L++++ R G    A+KLFD
Sbjct: 39  FPPLNLDYNRYRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFD 98

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR-SDNIL 146
           +MP ++  SW+ ++SGY Q+G   EA  +   +   G+  +   + S L  C     N+L
Sbjct: 99  EMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNML 158

Query: 147 S-GLLIHLYIVKHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAA 204
             G+ IH  I K     ++ +SN L++MY+     +  A RVF+++  +   SWNSII+ 
Sbjct: 159 KLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISV 218

Query: 205 YEQSNDPITAHGFFTTMQQAGIQ----PDLLTLVSLTSIVAQLNDCRNSRSVHGFI-MRR 259
           Y +  D I+A   F++MQ+   +    P+  T  SL ++   L DC  +        + +
Sbjct: 219 YCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEK 278

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
             F++D+ +G+A+V  +A+ G+I+SA  +FE +  ++ ++ N L+ G A+     EA ++
Sbjct: 279 SSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI 338

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGAL----RQGIKIHARVIKNCLCFDVF--VATC 373
           F+ M++  EIN +  +Y  +L A++    L    R+G ++HA +I+N L  DV+  +   
Sbjct: 339 FKEMKDLVEINAS--SYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNAL-VDVWILIGNA 395

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           LV++Y KC  ID+A S+F  +P   +V WN+IIS    + + ++A+  F  M   G+ P 
Sbjct: 396 LVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPS 455

Query: 434 HITFVSLLTACSHSGLVSEGQR 455
             + +S L++C+  G +  GQ+
Sbjct: 456 KFSVISTLSSCASLGWIMLGQQ 477



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 265/526 (50%), Gaps = 21/526 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           ++S Y + G   EA    ++  +++GL P+ Y     L+AC+ L       G +IH  + 
Sbjct: 111 LVSGYAQNGMPDEAC-MLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLIS 169

Query: 56  KLGFEWDVFVAASLLHMYCRFGLA-NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           K  +  D+ ++  L+ MY     + + AR++F+++ ++ S SWN++IS YC+ G+A+ A 
Sbjct: 170 KSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAF 229

Query: 115 DILDEMRLEGVSMD----PITVASILPV-CARSDNILSGLLIHL-YIVKHGLEFNLFVSN 168
            +   M+ E   ++      T  S++ V C+  D  L+ L   L  I K     +L+V +
Sbjct: 230 KLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGS 289

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L++ +A++G++  A  +F+QM +R+ V+ N ++    + +    A   F  M+   ++ 
Sbjct: 290 ALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEI 348

Query: 229 DLLTLVSLTSIVAQLNDC----RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           +  +   L S   + ++     R  + VH +++R       ++IGNA+V++YAK   I++
Sbjct: 349 NASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDN 408

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A ++F+ +P KD +SWN++I+G   N    EA+  F  M   N + P++ + +S L + +
Sbjct: 409 ARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRR-NGMVPSKFSVISTLSSCA 467

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +G +  G +IH   IK  L  DV V+  L+ +Y +   +++   +F+ +P    V WN+
Sbjct: 468 SLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNS 527

Query: 405 IISCHGI-HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
            I           +A+ +F +M+  G +P+ +TF+++L+A S   L+  G R  H +  +
Sbjct: 528 FIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELG-RQIHALILK 586

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             +         ++  +G+   +         M  R D   W A++
Sbjct: 587 HSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMI 632


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/529 (43%), Positives = 354/529 (66%), Gaps = 9/529 (1%)

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM---QQAGIQPDLLTLVSLTSI 239
           A R FD++ + + V   ++ + Y ++N    +   F  M     A +  +   LV+ ++ 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA- 61

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI--INSACAVFEGLPVKDV 297
            A++ D   + S+H  I + G F  +  + N ++D YAK G   +  A  VF+ +  +DV
Sbjct: 62  SARVPDRGVTASLHALIAKIG-FERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDV 119

Query: 298 ISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +SWN++I  YAQNG+++EAI ++ +M+     I  N     ++L A +H GA++ G  IH
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            +V++  L  +V+V T +VDMY KCGR++ A   F ++   + + W+A+I+ +G+HG+G 
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 239

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F +M   G+RP++ITF+S+L ACSH+GL+ EG+ +++ M++EFGI+  ++HYGCM
Sbjct: 240 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 299

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GRAG L  A++ I+ M V+PDA+IWGALL ACRIH N+EL  ++  RLFE+D+ N 
Sbjct: 300 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 359

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL+SNIYA  G W+ V+ +R L + R ++K PG+SS E+  K+ +FY G+++HP++ 
Sbjct: 360 GYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 419

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY  L  L  +M+  GYVP+   VL D++E+EKE  L  HSE+LA+AF +++S P+S I
Sbjct: 420 EIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 479

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I KNLRVC DCH   KFI++ITEREII+RD  RFHHFKDG+CSC DYW
Sbjct: 480 HIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 180/344 (52%), Gaps = 21/344 (6%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV----ASILP 137
           AR+ FD++P  +     AM SGY ++     +L++   M    ++ D  +V    A+++ 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM----IASDSASVVDEAAALVA 58

Query: 138 VCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGM--MRHALRVFDQMMER 193
             A +     G+   +H  I K G E N  V N +++ YAK G   +  A +VFD  MER
Sbjct: 59  FSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDT-MER 117

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--AGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           DVVSWNS+IA Y Q+     A G ++ M     GI+ + + L ++    A     +  + 
Sbjct: 118 DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKH 177

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H  ++R G   E+V +G ++VDMY+K G +  A   F  +  K+++SW+ +ITGY  +G
Sbjct: 178 IHNQVVRMG-LEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 236

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+E+F  M+    + PN  T++S+L A SH G L +G +     +K     +  V 
Sbjct: 237 RGQEALEIFTEMKRSG-LRPNYITFISVLAACSHAGLLDEG-RYWYNAMKQEFGIEAGVE 294

Query: 372 --TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
              C+VD+ G+ G +D+A SL  ++  +  +  W A++S   IH
Sbjct: 295 HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 338



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLAN--VARKLFDDMPVRDSGSWNAMISGYCQS 107
           +H  + K+GFE +  V  ++L  Y + G  +  VARK+FD M  RD  SWN+MI+ Y Q+
Sbjct: 74  LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 132

Query: 108 GNAVEALDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           G + EA+ +  +M     G+  + + ++++L  CA +  I +G  IH  +V+ GLE N++
Sbjct: 133 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVY 192

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  ++++MY+K G +  A R F ++ E++++SW+++I  Y        A   FT M+++G
Sbjct: 193 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG 252

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+ +T +S+ +  +        R  +  + +       V     +VD+  + G ++ A
Sbjct: 253 LRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 312

Query: 286 CAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPA 342
            ++ + + VK D   W  L++    +    + +E+ +M ++   E++  N G YV +   
Sbjct: 313 YSLIKEMKVKPDAAIWGALLSACRIH----KNVELAEMSVKRLFELDASNSGYYVLLSNI 368

Query: 343 YSHVG 347
           Y+  G
Sbjct: 369 YAEAG 373



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQ-FTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI++Y + G  +EA+  + +   +  G++ +      VL AC +   +  GK IH  V++
Sbjct: 125 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVR 184

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G E +V+V  S++ MY + G   +A + F  +  ++  SW+AMI+GY   G   EAL+I
Sbjct: 185 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 244

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYA 175
             EM+  G+  + IT  S+L  C+ +  +  G   +  + +  G+E  +     ++++  
Sbjct: 245 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLG 304

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +  +M ++ D   W ++++A
Sbjct: 305 RAGCLDEAYSLIKEMKVKPDAAIWGALLSA 334


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 382/661 (57%), Gaps = 45/661 (6%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRDSGSWNAMISGYC 105
           +IH  ++K   + + FV A LL        AN    AR +FD++P  D+  WN MI  Y 
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 106 QSGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            S N  E++ +  +MR  E + +D  +++ ++  C R  +  +G  +H  ++K GL  +L
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV   LI MYAKFG +  A  + D+M   D+V +N ++A Y +  +   AH  F  M + 
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPE- 199

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
                                                   D++  N ++  +A LG + +
Sbjct: 200 ---------------------------------------RDLVSWNTMIHGHASLGDVGT 220

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +F+    +D+ISW+++I  YA+   ++EA+ +F  M+  N + P++ T VS+L A  
Sbjct: 221 AKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL-PDKVTMVSVLSACG 279

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            VGAL  G  IH  + +N +  D+ + T LVDMY KCG ID+++ +F  +       W+A
Sbjct: 280 DVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSA 339

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I     HG G+ AL+ F +M+ E ++P+ +TF+ +L+ACSH GLV EG  YF  M + +
Sbjct: 340 MIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVY 399

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            + P ++HYGC+VD+ GRAG L  A   I++MP  PDA +W ALLGACRI+ N+E+   A
Sbjct: 400 DVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEA 459

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           +  L E++    G YVL+SNIY+   +W+ V  VR + ++  ++K PG SSIEV+N V  
Sbjct: 460 TVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHE 519

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+++HP+ +KI   L  +TA++K+ GY P  + VLQD +E EKE+ L  HSE+LAIA
Sbjct: 520 FVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIA 579

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG++S+ P S I+I KNLRVC DCH   K IS+  +R IIVRD NRFHHF +G CSC DY
Sbjct: 580 FGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDY 639

Query: 705 W 705
           W
Sbjct: 640 W 640



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 181/432 (41%), Gaps = 77/432 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y+      E++  F+Q      +  D Y+   V++AC  L D   G+K+H  VLK+
Sbjct: 75  MIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKI 134

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARK-------------------------------LF 86
           G   D+FV  +L+ MY +FG   +AR                                LF
Sbjct: 135 GLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLF 194

Query: 87  DDMPVRDSGSWNAMISG-------------------------------YCQSGNAVEALD 115
           D MP RD  SWN MI G                               Y ++  + EAL 
Sbjct: 195 DRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALR 254

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  EM+L  V  D +T+ S+L  C     +  G +IH  I ++ +E +L +  +L++MYA
Sbjct: 255 LFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYA 314

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G + ++LRVF+ M  RDV +W+++I           A   F+ M    I+P+ +T + 
Sbjct: 315 KCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIG 374

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-V 294
           + S  + +       +    + +       +     VVD+  + G +  A  + + +P  
Sbjct: 375 VLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFA 434

Query: 295 KDVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALR 350
            D I W  L+     Y    +A EA     ++    E+ P+  G YV +   YS      
Sbjct: 435 PDAIVWRALLGACRIYKNVEIAEEA--TVNLL----ELEPHVDGNYVLLSNIYSQAKEWD 488

Query: 351 QGIKIHARVIKN 362
           + + +  R++KN
Sbjct: 489 KVVNVR-RMMKN 499



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD---AMSLFYQVP 395
           ++    +   L Q I+IHA +IK  L  + FV   L+     C   +D   A S+F ++P
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQ 454
              +  WN +I  +       ++++ F QM  +   P D  +   ++ AC        GQ
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
           +  H    + G+   L     +++++ + G + +A N +  M   PD   +  LL     
Sbjct: 126 K-LHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM-AHPDLVPYNVLLAEYVR 183

Query: 515 HGNMELGAVASDRLFEVD 532
            G + L     DR+ E D
Sbjct: 184 VGEINLAHDLFDRMPERD 201


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/589 (39%), Positives = 361/589 (61%), Gaps = 11/589 (1%)

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           E++ +G +M       +L  C     +  G  +H +++K      +++S  LI +Y K  
Sbjct: 7   EIKFDGYNM-------LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCE 59

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  VFD+M ER+VVSW ++I+ Y Q      A   F  M ++  +P+  T  ++ S
Sbjct: 60  CLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLS 119

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                +     R +H  I +R  +   + +G++++DMYAK G I+ A  VFE LP +DV+
Sbjct: 120 SCTGFSGFELGRQIHSHIFKRN-YENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVV 178

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           S   +I+GYAQ GL  EA+E+F  ++    ++ N  TY S+L A S + AL  G ++H+ 
Sbjct: 179 SCTAIISGYAQLGLDEEALELFCRLQR-EGMSSNYVTYASLLTALSGLAALDHGKQVHSH 237

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V++  L F V +   L+DMY KCG ++ A  +F  +P  + + WNA++  +  HG+G + 
Sbjct: 238 VLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEV 297

Query: 419 LNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYF-HMMQEEFGIKPHLKHYGCM 476
           +  F+ M +E  V+PD +TF+++L+ CSH GL  +G   F  MM     I+  ++HYGC+
Sbjct: 298 VKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCV 357

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG +  A   I+ MP  P A+IWG+LLGACR+H N  +G     RL E++ EN 
Sbjct: 358 IDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENA 417

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YV++SN+YA+ G+WE V  VR L  ++ + K PG S IE++  +  FY  +R+HP+ E
Sbjct: 418 GNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRRE 477

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +++ ++R L  K K  GYVPD+S VL DV+E++KE IL  HSE+LA+AFG+IS+    P+
Sbjct: 478 EVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPL 537

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNLR+C DCHN+ KF+S++  R++ +RD NRFHH   GICSCGDYW
Sbjct: 538 RVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 208/374 (55%), Gaps = 4/374 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R + +G+++H  ++K  +   V+++  L+ +Y +      AR +FD+M  R+  SW AMI
Sbjct: 24  RAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMI 83

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SGY Q G A EAL +  +M       +  T A++L  C        G  IH +I K   E
Sbjct: 84  SGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYE 143

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV ++L++MYAK G +  A  VF+ + ERDVVS  +II+ Y Q      A   F  +
Sbjct: 144 NHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRL 203

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q+ G+  + +T  SL + ++ L    + + VH  ++R       V++ N+++DMY+K G 
Sbjct: 204 QREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFY-VVLQNSLIDMYSKCGN 262

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +N A  +F  +PV+ VISWN ++ GY+++G   E +++F++M E N++ P+  T++++L 
Sbjct: 263 LNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLS 322

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSS 398
             SH G   +G+++   ++      +  +    C++D+ G+ GR+++A  L  ++P   +
Sbjct: 323 GCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPT 382

Query: 399 SVPWNAIISCHGIH 412
           +  W +++    +H
Sbjct: 383 AAIWGSLLGACRVH 396


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/719 (36%), Positives = 405/719 (56%), Gaps = 32/719 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVL----- 55
           M S   R G   E++    +  L SGL P+ YT   V  AC       +++C V      
Sbjct: 122 MASCLARNGAERESLLLIGEM-LESGLLPNAYTLCAVAHACFP----HELYCLVGGVVLG 176

Query: 56  ---KLGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
              K+G  W  D+ V ++L+ M  R G    ARK+FD +  +    W  +IS Y Q   A
Sbjct: 177 LVHKMGL-WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECA 235

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EA++I  +   +G   D  T++S++  C    ++  GL +H   ++ G   +  VS  L
Sbjct: 236 EEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGL 295

Query: 171 INMYAKFGM---MRHALRVFDQMMERDVVSWNSIIAAYEQSN-DPITAHGFFTTMQQAGI 226
           ++MYAK  +   M +A +VF++M + DV+SW ++I+ Y QS          F  M    I
Sbjct: 296 VDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESI 355

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P+ +T  S+    A ++D  + R VH  +++         +GNA+V MYA+ G +  A 
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHT-VGNALVSMYAESGCMEEAR 414

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF  L  + +IS  T      +   A     + +M     ++  +  T+ S++ A + V
Sbjct: 415 RVFNQLYERSMISCIT------EGRDAPLDHRIGRM-----DMGISSSTFASLISAAASV 463

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G L +G ++HA  +K     D FV+  LV MY +CG ++DA   F ++   + + W ++I
Sbjct: 464 GMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMI 523

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S    HG  ++AL+ F  M+  GV+P+ +T++++L+ACSH GLV EG+ YF  MQ + G+
Sbjct: 524 SGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HY CMVDL  R+G +  A  FI  MP++ DA +W  LLGACR H N+E+G +A+ 
Sbjct: 584 IPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAK 643

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            + E++  +   YVL+SN+YA+ G W+ V  +RS  RD  L K  G S +EV N    F 
Sbjct: 644 NVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFR 703

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+ + IY +L  L  ++K +GYVPD S VL D+ ++ KE  L  HSE++A+AFG
Sbjct: 704 AGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFG 763

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I++    PI+IFKNLRVC DCH+  K++S+ T REII+RDSNRFH  KDG CSCG+YW
Sbjct: 764 LITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 158/533 (29%), Positives = 255/533 (47%), Gaps = 28/533 (5%)

Query: 47  GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGY 104
           G+ +H  +L+    + D  VA SLL +Y R G    AR +FD M  +RD  SW AM S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-- 162
            ++G   E+L ++ EM   G+  +  T+ ++   C   + +   +   +  + H +    
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHE-LYCLVGGVVLGLVHKMGLWG 185

Query: 163 -NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++ V + LI+M A+ G +  A +VFD ++E+ VV W  +I+ Y Q      A   F   
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            + G +PD  T+ S+ S   +L   R    +H   +R G F  D  +   +VDMYAK  I
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMG-FASDACVSCGLVDMYAKSNI 304

Query: 282 ---INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF--QMMEECNEINPNQGTY 336
              ++ A  VFE +   DVISW  LI+GY Q+G+    + V   +M+ E   I PN  TY
Sbjct: 305 EQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNE--SIKPNHITY 362

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            SIL A +++     G ++HA VIK+       V   LV MY + G +++A  +F Q+  
Sbjct: 363 SSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYE 422

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            S      +ISC  I    D  L+     +D G+     TF SL++A +  G++++GQ+ 
Sbjct: 423 RS------MISC--ITEGRDAPLDHRIGRMDMGISSS--TFASLISAAASVGMLTKGQQ- 471

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H M  + G          +V ++ R G+L  A      +  R   S W +++     HG
Sbjct: 472 LHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVIS-WTSMISGLAKHG 530

Query: 517 NMELG-AVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDRGL 567
             E   ++  D +      N   Y+ + +  ++VG   EG +  RS+ RD GL
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 155/311 (49%), Gaps = 44/311 (14%)

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G   H   +   +++RD V  NS++  Y +     +A   F  M+  G++ D+++  +
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR--GLR-DIVSWTA 121

Query: 236 LTSIVAQLNDCRNSRSVHGFIM------------------------------------RR 259
           + S +A+    R S  + G ++                                    + 
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G +  D+ +G+A++DM A+ G + SA  VF+GL  K V+ W  LI+ Y Q   A EA+E+
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F    E +   P++ T  S++ A + +G++R G+++H+  ++     D  V+  LVDMY 
Sbjct: 242 FLDFLE-DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 380 KCG---RIDDAMSLFYQVPRSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPDHI 435
           K      +D A  +F ++ ++  + W A+IS +   G Q +K +  F +ML+E ++P+HI
Sbjct: 301 KSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 436 TFVSLLTACSH 446
           T+ S+L AC++
Sbjct: 361 TYSSILKACAN 371



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 347 GALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
           G LR G  +H R+++ + L  D  VA  L+ +Y +CG +  A ++F  +      V W A
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           + SC   +G   ++L    +ML+ G+ P+  T  ++  AC    L          +  + 
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 465 GI-KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G+    +     ++D+  R G L  A      + +     +W  L+
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGL-IEKTVVVWTLLI 226


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 395/688 (57%), Gaps = 19/688 (2%)

Query: 28  RPDFYTFPPVLKAC--RNL--VDGKKIHCSVLKLGFEW--DVFVAASLLHMYCRFGLANV 81
           RP+ +T     +AC  + L  + G  +   VLK GF W  DV V  +L+ M+ R G    
Sbjct: 140 RPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGF-WGTDVSVGCALIDMFARNGDLVA 198

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A+++FD +  R S  W  +I+ Y Q+G A + +++   M  +G   D  +++S++  C  
Sbjct: 199 AQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTE 258

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALRVFDQMMERDVVSW 198
             ++  G  +H   ++ GL  +  VS  L++MYAK  M   M HA +VF  M   +V+SW
Sbjct: 259 LGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSW 318

Query: 199 NSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
            ++I+ Y QS          F  M    I+P+ +T  +L    A L+D  + R +H  ++
Sbjct: 319 TALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVL 378

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           +      +V+ GNA+V MYA+ G +  A   F+ L   +++S +  +     N   S  I
Sbjct: 379 KTSIAHVNVV-GNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKI 437

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           E         +   +  T+ S+L A + VG L +G K+HA  +K     D  ++  LV M
Sbjct: 438 EGM-------DDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSM 490

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y +CG ++DA   F ++   + + W +IIS    HG   +AL+ F  M+  GV+P+ +T+
Sbjct: 491 YARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTY 550

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           +++L+ACSH GLV EG+ +F  MQ++ G+ P ++HY C+VDL  R+G +  A  FI  MP
Sbjct: 551 IAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMP 610

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
            + DA +W  LL ACR +GN E+G +A++ +  ++  +   YVL+SN+YA+ G W+ V  
Sbjct: 611 CKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVAR 670

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +RSL RD+ L K  G S ++V N +  F  G+ +HP    IY +L  L  ++K +GYVPD
Sbjct: 671 IRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPD 730

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
            S VL D+ E+ KE  L  HSE++A+AFG+I++    P++IFKNLRVC DCH+  K+IS+
Sbjct: 731 TSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISK 790

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
            T REII+RDSNRFH  KDGICSCG+YW
Sbjct: 791 STGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 258/533 (48%), Gaps = 24/533 (4%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGY 104
           G+ +H  +L+    + D  VA SLL MY + G    AR++FD M  VRD  SW AM S  
Sbjct: 59  GRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCL 118

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI-LSGLLIHLYIVKHGL-EF 162
            ++G   E+L +L EM   G+  +  T+ +    C   +   L+G ++  +++K G    
Sbjct: 119 ARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGT 178

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           ++ V   LI+M+A+ G +  A RVFD ++ER  V W  +I  Y Q+         F  M 
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML 238

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             G +PD  ++ S+ S   +L   R  + +H   +R G  + D  +   +VDMYAKL + 
Sbjct: 239 DDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLG-LVSDSCVSCGLVDMYAKLKME 297

Query: 283 NS---ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF--QMMEECNEINPNQGTYV 337
            S   A  VF+ +P  +V+SW  LI+GY Q+G+    +     +M+ E   I PN  TY 
Sbjct: 298 RSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE--SIRPNHITYS 355

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           ++L A +++     G +IHA V+K  +     V   LV MY + G +++A   F Q+  +
Sbjct: 356 NLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYET 415

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           + +  +  +       + + + +   + +D+GV     TF SLL+A +  GL+++GQ+  
Sbjct: 416 NILSMSPDVETE----RNNASCSSKIEGMDDGVST--FTFASLLSAAASVGLLTKGQK-L 468

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG- 516
           H +  + G +        +V ++ R G+L  A      M      S W +++     HG 
Sbjct: 469 HALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVIS-WTSIISGLAKHGY 527

Query: 517 -NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDRGL 567
               L       L  V   +V Y  ++S   ++VG   EG +  RS+ +D GL
Sbjct: 528 AKQALSMFHDMILAGVKPNDVTYIAVLSAC-SHVGLVKEGKEHFRSMQKDHGL 579



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 198/362 (54%), Gaps = 13/362 (3%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            A +L   AR+ ++  G  +H  +++   L+ +  V+N+L+ MY+K G +  A RVFDQM
Sbjct: 43  AAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQM 102

Query: 191 ME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
              RD+VSW ++ +   ++     +      M + G++P+  TL +           R +
Sbjct: 103 CGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLA 162

Query: 250 RS-VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
              V GF+++ G++  DV +G A++DM+A+ G + +A  VF+GL  +  + W  LIT Y 
Sbjct: 163 GGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYV 222

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           Q G AS+ +E+F  M + +   P+  +  S++ A + +G++R G ++H+  ++  L  D 
Sbjct: 223 QAGCASKVVELFLHMLD-DGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDS 281

Query: 369 FVATCLVDMYGKCG---RIDDAMSLFYQVPRSSSVPWNAIISCHGIHG-QGDKALNFFRQ 424
            V+  LVDMY K      ++ A  +F  +PR + + W A+IS +   G Q +  +  FR+
Sbjct: 282 CVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFRE 341

Query: 425 MLDEGVRPDHITFVSLLTACSH-SGLVSEGQRYFHMMQEEFGIKPHLKHYG-CMVDLFGR 482
           ML+E +RP+HIT+ +LL AC++ S   S  Q + H+++       H+   G  +V ++  
Sbjct: 342 MLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIA---HVNVVGNALVSMYAE 398

Query: 483 AG 484
           +G
Sbjct: 399 SG 400



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 24/317 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS YV+ G     V   ++  L   +RP+  T+  +LKAC NL D   G++IH  VLK 
Sbjct: 321 LISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKT 380

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                  V  +L+ MY   G    ARK FD +   +  S +  +     + +    ++ +
Sbjct: 381 SIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGM 440

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D    +GVS    T AS+L   A    +  G  +H   +K G   +  +SN+L++MYA+ 
Sbjct: 441 D----DGVS--TFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARC 494

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R FD+M + +V+SW SII+   +      A   F  M  AG++P+ +T +++ 
Sbjct: 495 GYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVL 554

Query: 238 SIVAQL-------NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           S  + +          R+ +  HG + R   +         +VD+ A+ G++  A     
Sbjct: 555 SACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYA-------CIVDLLARSGLVEEARQFIN 607

Query: 291 GLPVK-DVISWNTLITG 306
            +P K D + W TL++ 
Sbjct: 608 EMPCKADALVWKTLLSA 624



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +P+TAH   ++               L +  A+  D R  R++H  ++R      D ++ 
Sbjct: 27  NPLTAHLVLSSDHSCDA-------AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVA 79

Query: 270 NAVVDMYAKLGIINSACAVFEGL-PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           N+++ MY+K G + +A  VF+ +  V+D++SW  + +  A+NG   E++ +   M E   
Sbjct: 80  NSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLE-LG 138

Query: 329 INPNQGTYVSILPAY--SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           + PN  T  +   A     +  L  G+ +   +       DV V   L+DM+ + G +  
Sbjct: 139 LRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVA 198

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +   +SV W  +I+ +   G   K +  F  MLD+G  PD  +  S+++AC+ 
Sbjct: 199 AQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTE 258

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG---HLGMAHNFIQNMPVRPDAS 503
            G V  GQ+  H +    G+         +VD++ +      +  A    + MP R +  
Sbjct: 259 LGSVRLGQQ-LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMP-RHNVM 316

Query: 504 IWGALL 509
            W AL+
Sbjct: 317 SWTALI 322


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 400/680 (58%), Gaps = 16/680 (2%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  +   CR L   ++    V     + +VF   +L+  Y +     VA +LFD+MP  D
Sbjct: 49  FLLLYSKCRRLSAARR----VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPD 104

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S S+N +I+ Y + G+   A  +  EMR   + MD  T++ I+  C  +  ++  L  H 
Sbjct: 105 SVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQL--HA 162

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPI 212
             V  GL+  + V N LI  Y+K G ++ A R+F  + E RD VSWNS++ AY Q  +  
Sbjct: 163 LSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGS 222

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   +  M   G+  D+ TL S+ +    + D       H  +++ G+  ++  +G+ +
Sbjct: 223 KALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH-QNSHVGSGL 281

Query: 273 VDMYAKLGIINSAC-AVFEGLPVKDVISWNTLITGYA-QNGLASEAIEVFQMMEECNEIN 330
           +D+Y+K G     C  VF+ +   D++ WNT+I+GY+    L+ EA+E F+ ++      
Sbjct: 282 IDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGH-R 340

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           P+  + V ++ A S++ +  QG ++H   +K +     + V   L+ MY KCG + DA +
Sbjct: 341 PDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKT 400

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF  +P  ++V +N++I+ +  HG G ++L+ F++ML+    P +ITF+S+L AC+H+G 
Sbjct: 401 LFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGR 460

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G+ YF+MM+++FGI+P   H+ CM+DL GRAG L  A   I+ +P  P    W ALL
Sbjct: 461 VEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALL 520

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACRIHGN+EL   A++RL ++D  N   YV+++NIY++ G+ +    VR L RDRG+KK
Sbjct: 521 GACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKK 580

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD--KSFVLQD--V 625
            PG S IEVN ++ IF   +  HP  +KI + L  +  K+K +GY P+   + V  D  V
Sbjct: 581 KPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRV 640

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            + E+E  L  HSE+LA++FG++S+    PI +FKNLR+C DCHN  K+IS++ +REI V
Sbjct: 641 WQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITV 700

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RDS+RFH FKDG CSCG YW
Sbjct: 701 RDSHRFHCFKDGQCSCGGYW 720



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 248/506 (49%), Gaps = 21/506 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR-NLVDGKKIHCSVLKLGF 59
           +I+ Y R G    A   F +    + L  D +T   ++ AC  N+   +++H   +  G 
Sbjct: 111 LIAAYARRGDTQPAFQLFLEMR-EAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGL 169

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILD 118
           +  V V  +L+  Y + G    AR++F  +   RD  SWN+M+  Y Q     +AL++  
Sbjct: 170 DSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYL 229

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF- 177
           EM + G+ +D  T+AS+L       ++L GL  H  ++K G   N  V + LI++Y+K  
Sbjct: 230 EMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSL 236
           G M    +VFD++   D+V WN++I+ Y    D    A   F  +Q  G +PD  +LV +
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCV 349

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  + ++     R VHG  ++       + + NA++ MY+K G +  A  +F+ +P  +
Sbjct: 350 ISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHN 409

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +S+N++I GYAQ+G+  +++ +FQ M E  +  P   T++S+L A +H G +  G KI+
Sbjct: 410 TVSYNSMIAGYAQHGMGFQSLHLFQRMLEM-DFTPTNITFISVLAACAHTGRVEDG-KIY 467

Query: 357 ARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHG 413
             ++K     +      +C++D+ G+ G++ +A  L   +P       W+A++    IHG
Sbjct: 468 FNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHG 527

Query: 414 QGD---KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
             +   KA N   Q+      P    +V L    S +G + +      +M++  G+K   
Sbjct: 528 NVELAIKAANRLLQLDPLNAAP----YVMLANIYSDNGRLQDAASVRKLMRDR-GVK--- 579

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNM 496
           K  GC      R  H+ +A +    M
Sbjct: 580 KKPGCSWIEVNRRIHIFVAEDTFHPM 605



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 204/433 (47%), Gaps = 43/433 (9%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  C    ++ +G  +H   +K  +  + ++SN+ + +Y+K   +  A RVFD   + +V
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV--- 252
            S+N++I+AY + +    AH  F  M     QPD ++  +L +  A+  D + +  +   
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 253 --HGFIMRRGWFMEDVI---------------------------IGNAVVDMYAKLGIIN 283
               F+   G+ +  +I                           +GNA++  Y+K G + 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 284 SACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            A  +F  L   +D +SWN+++  Y Q+   S+A+E++  M     +  +  T  S+L A
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-TVRGLIVDIFTLASVLTA 249

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVPRSSSVP 401
           +++V  L  G++ HA++IK+    +  V + L+D+Y KCG  + D   +F ++     V 
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVL 309

Query: 402 WNAIISCHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN +IS + ++    D+AL  FRQ+   G RPD  + V +++ACS+    S+G R  H +
Sbjct: 310 WNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG-RQVHGL 368

Query: 461 QEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +  I  + +     ++ ++ + G+L  A      MP     S + +++     HG   
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHGMGF 427

Query: 520 LGAVASDRLFEVD 532
                  R+ E+D
Sbjct: 428 QSLHLFQRMLEMD 440


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 358/590 (60%), Gaps = 3/590 (0%)

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D LD +    ++  P    S++  CAR  ++     IH ++       ++F+ N+LI++Y
Sbjct: 50  DTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLY 109

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G +  A RVFD M  RD+ SW S+IA Y Q++ P  A G    M +   +P+  T  
Sbjct: 110 CKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFA 169

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           SL               +H   ++  W  +DV +G+A++DMYA+ G ++ A AVF+ L  
Sbjct: 170 SLLKAAGASASSGIGEQIHALTVKYDWH-DDVYVGSALLDMYARCGRMDMAIAVFDQLES 228

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K+ +SWN LI G+A+ G     + +F  M+  N       TY S+  A + +GAL QG  
Sbjct: 229 KNGVSWNALIAGFARKGDGETTLLMFAEMQR-NGFEATHFTYSSVFSAIAGIGALEQGKW 287

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +HA +IK+      FV   ++DMY K G + DA  +F +V +   V WN++++    +G 
Sbjct: 288 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL 347

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A+  F +M   GV  + ITF+S+LTACSH GLV EG++YF MM+E + ++P + HY 
Sbjct: 348 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYV 406

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
            +VDL GRAG L  A  FI  MP++P A++WGALLG+CR+H N ++G  A+D +FE+D +
Sbjct: 407 TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPD 466

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G  VL+ NIYA+ G+W+    VR + +  G+KK P  S +E+ N V +F   + THP+
Sbjct: 467 DTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPR 526

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            E+IY +   ++ +++  GYVP+  +VL  V+E E++  L  HSE++A+AF +I+ P  +
Sbjct: 527 SEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGA 586

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
            I+I KN+R+CGDCH+  ++IS++ +REI+VRD+NRFHHF  G CSCGDY
Sbjct: 587 TIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 211/380 (55%), Gaps = 6/380 (1%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           ++ AC   R+L D + IH  +    F   VF+  SL+H+YC+ G    AR++FD MP RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SW ++I+GY Q+    EAL +L  M       +  T AS+L     S +   G  IH 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             VK+    +++V + L++MYA+ G M  A+ VFDQ+  ++ VSWN++IA + +  D  T
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
               F  MQ+ G +    T  S+ S +A +      + VH  +++ G  +    +GN ++
Sbjct: 250 TLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS-AFVGNTIL 308

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYAK G +  A  VF+ +  KDV++WN+++T +AQ GL  EA+  F+ M +C  ++ NQ
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-VHLNQ 367

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T++SIL A SH G +++G +    + +  L  ++     +VD+ G+ G ++DA+   ++
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 394 VP-RSSSVPWNAIISCHGIH 412
           +P + ++  W A++    +H
Sbjct: 428 MPMKPTAAVWGALLGSCRMH 447


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/714 (37%), Positives = 396/714 (55%), Gaps = 16/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS YV  G  + A+  F++  L  G+  D   F  VL AC +   L  G+ IH   ++ 
Sbjct: 99  LISAYVSRGHSAAAIALFHRI-LQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEA 157

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G      VA++L+ MY R G    A  LF  +    D   WNAMI+   Q+G+  EAL+I
Sbjct: 158 GLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEI 217

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMY 174
              M   G+  D +T  S+   C+ S ++ +  +   H  + + GL  ++ V+  L+N Y
Sbjct: 218 FYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAY 277

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           A+ G +  A + F +M ER+ VSW S+IAA+ Q    +    F   + + G+ P   T  
Sbjct: 278 ARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLAVETFHAMLLE-GVVP---TRS 333

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           +L + +    D R +R V       G  + DV I   +V  YA+      A  VF     
Sbjct: 334 TLFAALEGCEDLRVARLVEAIAQEIG-VVTDVAIVTDLVMAYARCDGQEDAIRVFSAREE 392

Query: 295 K--DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
              D      +I  YAQ        +++    E   I+P++  Y++ L A + + AL +G
Sbjct: 393 GEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIE-RGISPDRILYITALDACASLAALSEG 451

Query: 353 IKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
            +IHA V  +  L  DV +   +V MYG+CG + DA   F  +P    + WNA++S    
Sbjct: 452 RQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQ 511

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG+ +   + FR ML EG   + I F++LL+AC+H+GLV  G  +F  M  + G+ P  +
Sbjct: 512 HGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATE 571

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGCMVDL GR G L  AH  +Q MPV PDA+ W AL+GACRI+G+ E G  A++R+ E+
Sbjct: 572 HYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLEL 631

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
            +++   YV + NIY+  G+W+    VR +  D GL+K PG SSIE+ +KV  F   +R+
Sbjct: 632 RADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRS 691

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ E IY EL  +   ++  GY      VL DVEE++KE +L  HSE+LAIAFG++S+P
Sbjct: 692 HPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTP 751

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             S +++ KNLRVC DCHN +KFIS++  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 752 QGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 236/493 (47%), Gaps = 21/493 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG 95
           +++ C ++  GK +H  +        D ++A+SL++MY R G    A  +F  +  +   
Sbjct: 35  LVRECNSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
            W  +IS Y   G++  A+ +   +  EG+++D I   S+L  C+  + + +G LIH   
Sbjct: 95  LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQSNDPIT 213
           V+ GL     V++ L++MY + G +R A  +F   +ER  DVV WN++I A  Q+  P  
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALFGH-LERHLDVVLWNAMITANSQNGSPRE 213

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF--IMRRGWFMEDVIIGNA 271
           A   F  M Q GI PDL+T VS+    +     R S+ V GF   +       DV++  A
Sbjct: 214 ALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQ-VKGFHACLDETGLGSDVVVATA 272

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +V+ YA+ G I+ A   F  +P ++ +SW ++I  + Q G    A+E F  M     + P
Sbjct: 273 LVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLL-AVETFHAM-LLEGVVP 330

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
            + T  + L        LR    + A   +  +  DV + T LV  Y +C   +DA+ +F
Sbjct: 331 TRSTLFAALEGCED---LRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVF 387

Query: 392 YQVPRSSSVPWNA--IISCHGIHGQGDKALNFFR---QMLDEGVRPDHITFVSLLTACSH 446
                     W+A  + +   ++ Q     + F+     ++ G+ PD I +++ L AC+ 
Sbjct: 388 SAREEGE---WDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACAS 444

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              +SEG++    +  +  +   +     +V ++G+ G L  A +    MP R + S W 
Sbjct: 445 LAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEIS-WN 503

Query: 507 ALLGACRIHGNME 519
           A+L A   HG +E
Sbjct: 504 AMLSASAQHGRVE 516


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/743 (33%), Positives = 404/743 (54%), Gaps = 72/743 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           ++ V +R G   +AV+ F +    SG +    T   +L+ C N     +G++IH  VL+L
Sbjct: 60  IVMVNLRSGNWEKAVELFREMQF-SGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRL 118

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +V +  SL+ MY R G   ++RK+F+ M  R+  SWN+++S Y + G   +A+ +L
Sbjct: 119 GLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLL 178

Query: 118 DEMRLEGVSMDPIT-----------------------------------VASILPVCARS 142
           DEM + G+  D +T                                   ++S+L   A  
Sbjct: 179 DEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEP 238

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G  IH YI+++ L ++++V   LI+MY K G + +A  VFD M  +++V+WNS++
Sbjct: 239 GHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLV 298

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           +    +     A      M++ GI+PD +T  SL S  A L     +  V G +  +G  
Sbjct: 299 SGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKG-- 356

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
                                            +V+SW  + +G ++NG    A++VF  
Sbjct: 357 ------------------------------VAPNVVSWTAIFSGCSKNGNFRNALKVFIK 386

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M+E   + PN  T  ++L     +  L  G ++H   ++  L  D +VAT LVDMYGK G
Sbjct: 387 MQE-EGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSG 445

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +  A+ +F+ +   S   WN ++  + + G+G++ +  F  ML+ G+ PD ITF S+L+
Sbjct: 446 DLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLS 505

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            C +SGLV EG +YF +M+  +GI P ++H  CMVDL GR+G+L  A +FIQ M ++PDA
Sbjct: 506 VCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDA 565

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           +IWGA L +C+IH ++EL  +A  RL  ++  N   Y++M N+Y+N+ +WE V+ +R+L 
Sbjct: 566 TIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLM 625

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           R+  ++    WS I+++  V IFY   +THP    IY EL  L ++MK  GYVPD S + 
Sbjct: 626 RNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIH 685

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
           QD+ + EKE +L  H+E+LA+ +G+I     +PI++ KN  +C D H   K++S +  RE
Sbjct: 686 QDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNRE 745

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           I++++  R HHF+DG CSC D W
Sbjct: 746 IVLQEGARVHHFRDGKCSCNDSW 768


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           AS+L  C  +  +  G  +H  + + G+ +NL ++  L+N Y+    +R+A  +FD++ +
Sbjct: 62  ASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPK 121

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            ++  WN +I AY  +    TA   +  M + G++PD  TL  +    + L+     R +
Sbjct: 122 GNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVI 181

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  ++R GW   DV +G A+VDMYAK G +  A  VF+ +  +D + WN+++  YAQNG 
Sbjct: 182 HERVIRSGW-ERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E++ +   M     + P + T V+++ + + +  L  G +IH    ++   ++  V T
Sbjct: 241 PDESLSLCCEMA-AKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKT 299

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+DMY KCG +  A  LF ++     V WNAII+ + +HG   +AL+ F +M+ E  +P
Sbjct: 300 ALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QP 358

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           DHITFV  L ACS   L+ EG+  +++M  +  I P ++HY CMVDL G  G L  A++ 
Sbjct: 359 DHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDL 418

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I+ M V PD+ +WGALL +C+ HGN+EL  VA ++L E++ ++ G YV+++N+YA  GKW
Sbjct: 419 IRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKW 478

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           EGV  +R L  D+G+KK    S IEV NKV  F +G+ +HP    IY EL+ L   M+  
Sbjct: 479 EGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREA 538

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVPD   V  DVEEDEK  ++ SHSERLAIAFG+IS+ P + + I KNLR+C DCH   
Sbjct: 539 GYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAI 598

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KFIS+ITEREI VRD NR+HHF+ G+CSCGDYW
Sbjct: 599 KFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/447 (31%), Positives = 238/447 (53%), Gaps = 12/447 (2%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           + Y +  +L++C   + L  GK++H  + +LG  +++ +A  L++ Y        A  LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D +P  +   WN +I  Y  +G    A+ +  +M   G+  D  T+  +L  C+    I 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G +IH  +++ G E ++FV   L++MYAK G +  A  VFD++++RD V WNS++AAY 
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q+  P  +      M   G++P   TLV++ S  A +    + R +HGF  R G+   D 
Sbjct: 237 QNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDK 296

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +  A++DMYAK G +  AC +FE L  K V+SWN +ITGYA +GLA EA+++F+ M + 
Sbjct: 297 -VKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK- 354

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRID 385
            E  P+  T+V  L A S    L +G  ++  ++++C +   V   TC+VD+ G CG++D
Sbjct: 355 -EAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLD 413

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTA 443
           +A  L  Q+     S  W A+++    HG  + A     ++++  + PD    +V L   
Sbjct: 414 EAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIE--LEPDDSGNYVILANM 471

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            + SG      R   +M ++ GIK ++
Sbjct: 472 YAQSGKWEGVARLRQLMIDK-GIKKNI 497



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 186/376 (49%), Gaps = 17/376 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    A+  ++Q  L  GL+PD +T P VLKAC  L    +G+ IH  V++ 
Sbjct: 130 LIRAYAWNGPHETAISLYHQM-LEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRS 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E DVFV A+L+ MY + G    AR +FD +  RD+  WN+M++ Y Q+G+  E+L + 
Sbjct: 189 GWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLC 248

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  +GV     T+ +++   A    +  G  IH +  +HG ++N  V   LI+MYAK 
Sbjct: 249 CEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKC 308

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  +F+++ E+ VVSWN+II  Y      + A   F  M +   QPD +T V   
Sbjct: 309 GSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGAL 367

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
           +  ++       R+++  ++R       V     +VD+    G ++ A  +   + V  D
Sbjct: 368 AACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPD 427

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGA------L 349
              W  L+     +G   E  EV   +E+  E+ P + G YV +   Y+  G       L
Sbjct: 428 SGVWGALLNSCKTHG-NVELAEV--ALEKLIELEPDDSGNYVILANMYAQSGKWEGVARL 484

Query: 350 RQGIKIHARVIKNCLC 365
           RQ + I   + KN  C
Sbjct: 485 RQ-LMIDKGIKKNIAC 499



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 2/180 (1%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N   Y S+L +     AL  G ++HAR+ +  + +++ +AT LV+ Y  C  + +A  LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            ++P+ +   WN +I  +  +G  + A++ + QML+ G++PD+ T   +L ACS    + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG R  H      G +  +     +VD++ + G +  A +    + V  DA +W ++L A
Sbjct: 177 EG-RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI-VDRDAVLWNSMLAA 234


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/705 (37%), Positives = 393/705 (55%), Gaps = 28/705 (3%)

Query: 13   EAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEW-DVFVAAS 68
            + V+ F+   L +G+ P+  +F  +L AC N   L  G+KIH  +L    ++ +  VA  
Sbjct: 420  KVVNTFHHMLL-AGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATM 478

Query: 69   LLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            L+ MY + G    A  +F +MP+  R   +WN M+  Y Q+  + EA   L EM   GV 
Sbjct: 479  LVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 127  MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
             D ++  S+L  C  S       ++ + I++ G   +  +   LI+M+ +   +  A  V
Sbjct: 539  PDALSFTSVLSSCYCSQE---AQVLRMCILESGYR-SACLETALISMHGRCRELEQARSV 594

Query: 187  FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
            FD+M   DVVSW ++++A  ++ D    H  F  MQ  G+ PD  TL +       L+ C
Sbjct: 595  FDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLAT------TLDTC 648

Query: 247  RNSRS------VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             +S +      +H  +   G    D+ + NA+++MY+  G    A + FE +  +D++SW
Sbjct: 649  LDSTTLGLGKIIHACVTEIG-LEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSW 707

Query: 301  NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            N +   YAQ GLA EA+ +F+ M+    + P++ T+ + L        +  G   H    
Sbjct: 708  NIMSAAYAQAGLAKEAVLLFRHMQ-LEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAA 766

Query: 361  KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            ++ L  DV VAT LV +Y KCG++D+A+SLF    + + V  NAII     HG  ++A+ 
Sbjct: 767  ESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVK 826

Query: 421  FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             F +M  EGVRPD  T VS+++AC H+G+V EG   F  M+E FGI P L+HY C VDL 
Sbjct: 827  MFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLL 886

Query: 481  GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            GRAG L  A   I+ MP   +  +W +LLG C++ G+ ELG   + R+ E+D  N   +V
Sbjct: 887  GRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHV 946

Query: 541  LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            ++SNIY   GKW+  D  R    D+ +K  PG S +E+  +V  F  G+R+HP+ ++IY 
Sbjct: 947  VLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYV 1006

Query: 601  ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
             L  L   M+  GY  DK     D E++ KE  L  HSER+AIAFG+I++PP + ++I K
Sbjct: 1007 VLDKLELLMRRAGYEADKGL---DAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVK 1063

Query: 661  NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            NLRVCGDCH  TK+IS I  REIIVRDS RFHHF +G CSC D W
Sbjct: 1064 NLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 260/527 (49%), Gaps = 27/527 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS   + G  + A   F    L S   P+ YT   +L AC   R+L  G+ IH  + +L
Sbjct: 97  LISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWEL 156

Query: 58  GFEWD----VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV-E 112
           G E +      V  ++++MY + G    A  +F  +P +D  SW AM   Y Q      +
Sbjct: 157 GLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPD 216

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           AL I  EM L+ ++ + IT  + L  C    ++  G  +H  + + GL F+    N LIN
Sbjct: 217 ALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEAGLGFDPLAGNALIN 273

Query: 173 MYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           MY K G    A  VF  M  R   D+VSWN++I+A  ++     A   F  ++  G++P+
Sbjct: 274 MYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 230 LLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
            +TL++ L ++ A   D   +R  HG I   G ++ DV++GNA++ MYAK G  ++A  V
Sbjct: 334 SVTLITILNALAASGVDFGAARKFHGRIWESG-YLRDVVVGNAIISMYAKCGFFSAAWTV 392

Query: 289 FEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           F  +  K DVISWNT++          + +  F  M     I+PN+ ++++IL A S+  
Sbjct: 393 FRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG-IDPNKVSFIAILNACSNSE 451

Query: 348 ALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQ--VPRSSSVPWNA 404
           AL  G KIH+ ++     + +  VAT LV MYGKCG I +A  +F +  +P  S V WN 
Sbjct: 452 ALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNV 511

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           ++  +  + +  +A     +ML  GV PD ++F S+L++C      S+  +   M   E 
Sbjct: 512 MLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC----YCSQEAQVLRMCILES 567

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           G +        ++ + GR   L  A +    M    D   W A++ A
Sbjct: 568 GYRSACLETA-LISMHGRCRELEQARSVFDEMD-HGDVVSWTAMVSA 612



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 236/500 (47%), Gaps = 24/500 (4%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
            D   +  +L++C    +L  GK+ H  +   G E  +F+   L++MY R G    A  +
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAI 82

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDN 144
           F  M  R+  SW A+IS   QSG    A  +   M LE  +  +  T+ ++L  CA S +
Sbjct: 83  FSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRD 142

Query: 145 ILSGLLIHLYIVKHGLEFN----LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +  G  IH  I + GLE        V N +INMYAK G    A+ VF  + E+DVVSW +
Sbjct: 143 LAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTA 202

Query: 201 IIAAYEQSND--PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           +  AY Q     P  A   F  M    + P+++T ++       L   R+   +H  +  
Sbjct: 203 MAGAYAQERRFYP-DALRIFREMLLQPLAPNVITFITALGACTSL---RDGTWLHSLLHE 258

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASE 315
            G    D + GNA+++MY K G    A  VF+ +  +   D++SWN +I+   + G   +
Sbjct: 259 AGLGF-DPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGD 317

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCL 374
           A+ +F+ +     + PN  T ++IL A +  G       K H R+ ++    DV V   +
Sbjct: 318 AMAIFRRL-RLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAI 376

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           + MY KCG    A ++F ++  +   + WN ++          K +N F  ML  G+ P+
Sbjct: 377 ISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            ++F+++L ACS+S  +  G++   ++               +V ++G+ G +  A    
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVF 496

Query: 494 QNMPVRPDASI--WGALLGA 511
           + MP+ P  S+  W  +LGA
Sbjct: 497 KEMPL-PSRSLVTWNVMLGA 515



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 163/623 (26%), Positives = 275/623 (44%), Gaps = 78/623 (12%)

Query: 1   MISVYVRCGRLSEAVDCF-------------------------------YQFTLTSGLRP 29
           MI++Y +CG   +A+  F                               ++  L   L P
Sbjct: 172 MINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP 231

Query: 30  DFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           +  TF   L AC +L DG  +H  + + G  +D     +L++MY + G    A  +F  M
Sbjct: 232 NVITFITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAM 291

Query: 90  PVR---DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD-NI 145
             R   D  SWNAMIS   ++G   +A+ I   +RLEG+  + +T+ +IL   A S  + 
Sbjct: 292 ASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDF 351

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAA 204
            +    H  I + G   ++ V N +I+MYAK G    A  VF ++  + DV+SWN+++ A
Sbjct: 352 GAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS------RSVHGFIMR 258
            E           F  M  AGI P+ +      S +A LN C NS      R +H  I+ 
Sbjct: 412 SEDRKSFGKVVNTFHHMLLAGIDPNKV------SFIAILNACSNSEALDFGRKIHSLILT 465

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEA 316
           R     +  +   +V MY K G I  A  VF+ +P+  + +++WN ++  YAQN  + EA
Sbjct: 466 RRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEA 525

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC--- 373
                 M +   + P+  ++ S+L +              A+V++ C+    + + C   
Sbjct: 526 FGALMEMLQ-GGVLPDALSFTSVLSSCY--------CSQEAQVLRMCILESGYRSACLET 576

Query: 374 -LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+ M+G+C  ++ A S+F ++     V W A++S    +    +  + FR+M  EGV P
Sbjct: 577 ALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIP 636

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D  T  + L  C  S  +  G +  H    E G++  +     +++++   G    A +F
Sbjct: 637 DKFTLATTLDTCLDSTTLGLG-KIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSF 695

Query: 493 IQNMPVRPDASIWGALLGACRIHG----------NMELGAVASDRLFEVDSENV-GYYVL 541
            + M  R D   W  +  A    G          +M+L  V  D+L    + NV G   L
Sbjct: 696 FETMKAR-DLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSAL 754

Query: 542 MSN--IYANVGKWEGVDEVRSLA 562
           +S+  ++  +    G+D   S+A
Sbjct: 755 VSDGKLFHGLAAESGLDSDVSVA 777



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 18/219 (8%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y ++L +      L +G + H  +    L   +F+  CL++MY +CG +++A ++F ++ 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
             + V W A+IS +   G   +A   FR M L+    P+  T V++L AC++S  ++ G 
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG- 146

Query: 455 RYFHMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
           R  H M  E G++            M++++ + G    A      +P + D   W A+  
Sbjct: 147 RSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEK-DVVSWTAM-- 203

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
                     GA A +R F  D+  +   +L+  +  NV
Sbjct: 204 ---------AGAYAQERRFYPDALRIFREMLLQPLAPNV 233


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/665 (37%), Positives = 376/665 (56%), Gaps = 11/665 (1%)

Query: 47  GKKIHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+  H  ++K L      F+   L++MY +    N A+ L    P R   +W A+I+G  
Sbjct: 25  GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSV 84

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q+G    AL     MR + +  +  T            + L G  +H   VK G   ++F
Sbjct: 85  QNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVF 144

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPITAHGFFTTMQ 222
           V  +  +MY+K G+   A ++FD+M ER++ +WN+ ++      + +D +TA   F   +
Sbjct: 145 VGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTA---FIEFR 201

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             G +P+L+T  +  +  A  +  R  R +HGF+++ G F  DV + N ++D Y K   +
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSG-FEADVSVANGLIDFYGKCHQV 260

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             +  +F G+   + +SW ++I  Y QN    +A  VF +      I P      S+L A
Sbjct: 261 GCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVF-LRARKEGIEPTDFMVSSVLSA 319

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + +  L  G  +H   +K C+  ++FV + LVDMYGKCG I+DA   F ++P  + V W
Sbjct: 320 CAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTW 379

Query: 403 NAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           NA+I  +   GQ D A+  F +M      V P+++TFV +L+ACS +G V+ G   F  M
Sbjct: 380 NAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESM 439

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           +  +GI+P  +HY C+VDL GRAG +  A+ FI+ MP+RP  S+WGALLGA ++ G  EL
Sbjct: 440 RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSEL 499

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G VA+D LFE+D  + G +VL+SN++A  G+WE    VR   +D G+KK  G S I   N
Sbjct: 500 GKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGN 559

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
            V +F   + +H +  +I   L  L  +M++ GY+PD SF L D+EE+EK   +  HSE+
Sbjct: 560 AVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEK 619

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           +A+AFG+IS P   PI+I KNLR+CGDCH+  KFIS I  REIIVRD+N FH F+D  CS
Sbjct: 620 IALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCS 679

Query: 701 CGDYW 705
           C DYW
Sbjct: 680 CRDYW 684



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 265/548 (48%), Gaps = 33/548 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+  V+ GR + A+  F      S ++P+ +TFP   KA    R+ + GK++H   +K 
Sbjct: 79  LIAGSVQNGRFTSALFHFSNMRRDS-IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKA 137

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  S   MY + GL   ARK+FD+MP R+  +WNA +S     G   +AL   
Sbjct: 138 GQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAF 197

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R EG   + IT  + L  CA +  +  G  +H ++++ G E ++ V+N LI+ Y K 
Sbjct: 198 IEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKC 257

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  +  +F  + + + VSW S+I +Y Q+++   A   F   ++ GI+P    + S+ 
Sbjct: 258 HQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVL 317

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L+     +SVH   + +   + ++ +G+A+VDMY K G I  A   F+ +P +++
Sbjct: 318 SACAGLSVLEVGKSVHTLAV-KACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 376

Query: 298 ISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++WN +I GYA  G A  A+ +F +M    + + PN  T+V +L A S  G++  G++I 
Sbjct: 377 VTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIF 436

Query: 357 ARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
             +  +  +        C+VD+ G+ G ++ A     ++P R +   W A++    + G+
Sbjct: 437 ESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGK 496

Query: 415 GD----KALNFFR-QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +     A N F    LD G   +H+   ++  A   +G   E       M+ + GIK  
Sbjct: 497 SELGKVAADNLFELDPLDSG---NHVLLSNMFAA---AGRWEEATLVRKEMK-DVGIK-- 547

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR-- 527
            K  GC     G A H+  A +          A +        ++ G ME      D   
Sbjct: 548 -KGAGCSWITAGNAVHVFQAKDTSHERNSEIQAML-------AKLRGEMEAAGYIPDTSF 599

Query: 528 -LFEVDSE 534
            LF+++ E
Sbjct: 600 ALFDLEEE 607


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 369/616 (59%), Gaps = 16/616 (2%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNILSGLLIHLYI 155
           N +I   C+ GN  +AL +L          +P   T   ++  CA+ +++  GL +H  +
Sbjct: 51  NQLIQSLCKGGNLKQALHLL------CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCL 104

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           V  G + + F++  LINMY + G +  AL+VFD+  ER +  WN++  A           
Sbjct: 105 VDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELL 164

Query: 216 GFFTTMQQAGIQPDLLTL--VSLTSIVAQLNDC--RNSRSVHGFIMRRGWFMEDVIIGNA 271
             +  M   G   D  T   V    +V++L+ C  R  + +H  I+R G +  ++ +   
Sbjct: 165 DLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHG-YEANIHVMTT 223

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM--EECNEI 329
           ++D+YAK G ++ A +VF  +P K+ +SW+ +I  +A+N +  +A+E+FQ+M  E CN +
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSV 283

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN  T V++L A + + AL QG  IH  +++  L   + V   L+ MYG+CG +     
Sbjct: 284 -PNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQR 342

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  + +   V WN++IS +G+HG G KA+  F  M+ +GV P +I+F+++L ACSH+GL
Sbjct: 343 VFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGL 402

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG+  F  M  ++ I P ++HY CMVDL GRA  LG A   I++M   P  ++WG+LL
Sbjct: 403 VEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLL 462

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           G+CRIH N+EL   AS  LFE++  N G YVL+++IYA    W     V  L   RGL+K
Sbjct: 463 GSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQK 522

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IEV  KV  F + +  +P+ E+I+  L  L+ +MK+ GYVP  + VL D++E+E
Sbjct: 523 LPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEE 582

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE I+  HSE+LA+AFG+I++     I+I KNLR+C DCH  TKFIS+   REI+VRD N
Sbjct: 583 KERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVN 642

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF+DG+CSCGDYW
Sbjct: 643 RFHHFRDGVCSCGDYW 658



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 198/373 (53%), Gaps = 14/373 (3%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   TF  ++ +C    +L  G  +H  ++  GF+ D F+A  L++MY   G  + A K+
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD-- 143
           FD+   R    WNA+       G+  E LD+  +M   G   D  T   +L  C  S+  
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 144 --NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G  IH +I++HG E N+ V   L+++YAKFG + +A  VF  M  ++ VSW+++
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 202 IAAYEQSNDPITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           IA + ++  P+ A   F  M  +     P+ +T+V++    A L      + +HG+I+RR
Sbjct: 256 IACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRR 315

Query: 260 GWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
              ++ ++ + NA++ MY + G +     VF+ +  +DV+SWN+LI+ Y  +G   +AI+
Sbjct: 316 Q--LDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQ 373

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQG-IKIHARVIKNCLCFDVFVATCLVDM 377
           +F+ M     ++P+  +++++L A SH G + +G I   + + K  +   +    C+VD+
Sbjct: 374 IFENMIH-QGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDL 432

Query: 378 YGKCGRIDDAMSL 390
            G+  R+ +A+ L
Sbjct: 433 LGRANRLGEAIKL 445



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR-------NLVDGKKIHCSVLKLGFEW 61
           G   E +D + Q     G   D +T+  VLKAC         L  GK+IH  +L+ G+E 
Sbjct: 158 GHGKELLDLYIQMNWI-GTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEA 216

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           ++ V  +LL +Y +FG  + A  +F  MP ++  SW+AMI+ + ++   ++AL++   M 
Sbjct: 217 NIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMM 276

Query: 122 LEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            E  +  P  +T+ ++L  CA    +  G LIH YI++  L+  L V N LI MY + G 
Sbjct: 277 FEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGE 336

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           +    RVFD M +RDVVSWNS+I+ Y        A   F  M   G+ P  ++ +++
Sbjct: 337 VLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITV 393



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 5/181 (2%)

Query: 29  PDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P+  T   +L+AC  L     GK IH  +L+   +  + V  +L+ MY R G   + +++
Sbjct: 284 PNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRV 343

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+M  RD  SWN++IS Y   G   +A+ I + M  +GVS   I+  ++L  C+ +  +
Sbjct: 344 FDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLV 403

Query: 146 LSG-LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIA 203
             G +L    + K+ +   +     ++++  +   +  A+++ + M  E     W S++ 
Sbjct: 404 EEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLG 463

Query: 204 A 204
           +
Sbjct: 464 S 464


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/664 (37%), Positives = 377/664 (56%), Gaps = 4/664 (0%)

Query: 44  LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL-ANVARKLFDDMPVR-DSGSWNAMI 101
           L   K  HC +L+L    D  + + +L     F   A     +F   P   ++  +N MI
Sbjct: 17  LKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMI 76

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
            G         A+ +   M    +  D  T + +L  CAR +    G++IH  + K G +
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV  N++  Y+K G +R A +VFD M+ ++VVSW  +I    +      A   F  +
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGL 196

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            ++G++PD   +V +    A+L D  + R +    MR      +V +  ++VDMY K G 
Sbjct: 197 LESGLRPDGFVIVRVLRACARLGDLESGRWIDR-CMRECGLSRNVFVATSLVDMYTKCGS 255

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A  VF+G+  KD++ W+ +I GYA NGL  EAIE+F  M + N + P+    V  L 
Sbjct: 256 MEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVN-VRPDCYAMVGALS 314

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           + + +GAL  G      +       +  + T L+D Y KCG +++A+ ++  +     V 
Sbjct: 315 SCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVV 374

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +NA+IS   ++GQ   A   F QM   G+ P+  TFV LL  C+H+GLV +G+ YF+ M 
Sbjct: 375 FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMS 434

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
            +F + P ++HYGCMVDL  RAG L  AHN I+ MP++ +  +WG+LLG CR+H   +L 
Sbjct: 435 HDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLA 494

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
                +L E++  N G+YVL+SNIY+   +W+  +++RS   ++G++K PG+S +EV+  
Sbjct: 495 EHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGV 554

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+ +HP  +KIY++L +L   +K  GY P   FVL DVEE+EKEH L  HSE+L
Sbjct: 555 VHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKL 614

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AF +IS+  K  I++ KNLRVCGDCH   K IS++T REI++RD+NRFH F DG CSC
Sbjct: 615 AVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSC 674

Query: 702 GDYW 705
            DYW
Sbjct: 675 RDYW 678



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 218/437 (49%), Gaps = 18/437 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI   V   R + AV   Y     + + PD +TF  VLKAC  L     G  IH  V K 
Sbjct: 75  MIRGMVSKDRFNNAVH-LYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKT 133

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DVFV  +++  Y + G    A K+FDDM V++  SW  MI G  + G   EA+D+ 
Sbjct: 134 GFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLF 193

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +   G+  D   +  +L  CAR  ++ SG  I   + + GL  N+FV+ +L++MY K 
Sbjct: 194 RGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKC 253

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VFD M+E+D+V W+++I  Y  +  P  A   F  M++  ++PD   +V   
Sbjct: 254 GSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGAL 313

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L          G +M    F+ + ++G +++D YAK G +  A  V++ +  KD 
Sbjct: 314 SSCASLGALELGNWAKG-LMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + +N +I+G A  G    A  VF  M +   I PN+ T+V +L   +H G +  G     
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFG-IPPNEHTFVGLLCGCTHAGLVDDG----- 426

Query: 358 RVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHG 410
           R   N +  D  V        C+VD+  + G +D+A +L   +P +++ + W +++    
Sbjct: 427 RHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCR 486

Query: 411 IHGQGDKALNFFRQMLD 427
           +H +   A +  +Q+++
Sbjct: 487 LHRETQLAEHVLKQLIE 503



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 169/369 (45%), Gaps = 19/369 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI   +  G+  EAVD F    L SGLRPD +    VL+AC  L D   G+ I   + + 
Sbjct: 176 MICGCIEFGKFREAVDLFRGL-LESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMREC 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +VFVA SL+ MY + G    AR +FD M  +D   W+AMI GY  +G   EA+++ 
Sbjct: 235 GLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN-----NLIN 172
            EMR   V  D   +   L  CA    +  G        K  + +  F+SN     +LI+
Sbjct: 295 FEMRKVNVRPDCYAMVGALSSCASLGALELG-----NWAKGLMNYEEFLSNPVLGTSLID 349

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
            YAK G M  AL V+  M E+D V +N++I+          A G F  M + GI P+  T
Sbjct: 350 FYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHT 409

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            V L           + R     +         +     +VD+ A+ G ++ A  + +G+
Sbjct: 410 FVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGM 469

Query: 293 PVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALR 350
           P+K +VI W +L+ G     L  E      ++++  E+ P N G YV +   YS      
Sbjct: 470 PMKANVIVWGSLLGGCR---LHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWD 526

Query: 351 QGIKIHARV 359
           +  KI + V
Sbjct: 527 EAEKIRSTV 535


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 347/536 (64%), Gaps = 6/536 (1%)

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLL 231
           MYAK G+     ++FD+M  +D+V W ++I AYEQ+  P  A   F  MQQ  G+  D +
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
            +VS+ S V QL D +N+ +VHG+  R+   +E++ +GN+++ M+ K G    A  VF+ 
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKS-LIEELCVGNSILAMHTKCGNTEKARLVFDM 119

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  +DVISWN++++GY QNG A+EA+ +F  M + ++  P   T + ++ A +++G    
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRD-SDCQPTPVTALIMVSACAYLGFRHL 178

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--SSVPWNAIISCH 409
           G K H  ++ + +  D  ++  L+DMY KCG ++ A+ LF  +P +  ++  WN +IS +
Sbjct: 179 GRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGY 238

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           G+HG G +AL  F +M +EGV P+H TF S+L+ACSH+GL+ EG++ F  M+    +   
Sbjct: 239 GMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKR-LSVTLE 297

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
            KH+ C+VD+ GRAG L  A + I+ MP  P   +WGALL AC+IHGNMELG  A+  L 
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           +++  + GYYVLMSNIYA   KW+ V ++R   +++GLKK   +S IE    +  F+T +
Sbjct: 358 QLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD 417

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
           + +P   ++Y ++ +L  +MK  GYVPD S  L DVEE++KE +L  HSE+LA+AFG++ 
Sbjct: 418 QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLK 477

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             P   I++ KNLRVC DCH+  K+IS I +R+IIVRD+NRFHHF+ G CSC DYW
Sbjct: 478 IDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPI 130
           MY + GL    RK+FD+M  +D   W AMI+ Y Q+    EAL +  +M+ E G+  D I
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            V S+     +  ++ +   +H Y  +  L   L V N+++ M+ K G    A  VFD M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           MERDV+SWNS+++ Y Q+     A   F  M+ +  QP  +T + + S  A L      R
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 251 SVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGY 307
             H FI+     ME D  + NA++DMYAK G +  A  +F G+P   ++  SWN LI+GY
Sbjct: 181 KFHDFIVDSR--MEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGY 238

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
             +G   EA+E+F  M+E   + PN  T+ SIL A SH G + +G K  A + +  +  +
Sbjct: 239 GMHGHGKEALELFSRMQE-EGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLE 297

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPR-SSSVPWNAIISCHGIHGQGDKALNFFRQML 426
                C+VDM G+ G + +A  L  ++P   S   W A++    IHG  +        +L
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 427 DEGVRPDHITFVSLLT 442
              + P+H  +  L++
Sbjct: 358 Q--LEPNHTGYYVLMS 371



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 139/298 (46%), Gaps = 6/298 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKL 57
           MI+ Y +  +  EA+  F +     GL  D      V  A   L D K    +H    + 
Sbjct: 29  MITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRK 88

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               ++ V  S+L M+ + G    AR +FD M  RD  SWN+M+SGY Q+G A EAL + 
Sbjct: 89  SLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLF 148

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           DEMR       P+T   ++  CA       G   H +IV   +E +  +SN L++MYAK 
Sbjct: 149 DEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKC 208

Query: 178 GMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           G +  A+ +F+ +   ER+  SWN +I+ Y        A   F+ MQ+ G++P+  T  S
Sbjct: 209 GDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTS 268

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           + S  +        R     + R    +ED      VVDM  + G++  A  + + +P
Sbjct: 269 ILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHA-CVVDMLGRAGLLQEAFDLIKEMP 325


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 376/617 (60%), Gaps = 3/617 (0%)

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSG 148
           P R + S+N +I  + ++G+  +AL +  EM  +  VS D  TVA+ +  C+R  ++  G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +  Y  K G   + FV N+LI+MYA  G +  A  +F  +  + V++WN++IA Y ++
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            D       F  M +     D +TL+S+ +   +L D    + +  +   +G  +    +
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKG-MLRSRNL 309

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
             A+VDMYAK G ++ A  +F+ +  +DV++W+ +I+GY Q+    EA+ +F  M+   E
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQG-TE 368

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +NPN  T VS+L A + +GAL  G  +H+ + +  L   V + T LVD Y KCG I DA+
Sbjct: 369 VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAV 428

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             F  +P  ++  W A+I     +G+  +AL  F  ML+  + P  +TF+ +L ACSH  
Sbjct: 429 KAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGC 488

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG+R+F  M +++GI P ++HYGCMVDL GRAG +  A+ FI+NMP+ P+A +W AL
Sbjct: 489 LVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRAL 548

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC +H N+E+G  A  ++  +D  + G Y+L+SN YA+VG+W+    VR   +++G++
Sbjct: 549 LSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVE 608

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG S IE+   +  F+  +  HP+  +IY+++  +   +K +GY+P+ +    DV+E 
Sbjct: 609 KIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEY 668

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK+  ++ HSE+LAIAFG++ S P + I++ KNLRVC DCH+ TK IS++  REIIVRD 
Sbjct: 669 EKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDR 728

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG+CSC DYW
Sbjct: 729 NRFHHFKDGLCSCNDYW 745



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 138/428 (32%), Positives = 224/428 (52%), Gaps = 10/428 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  ++R G   +A+  F +    + + PD +T    +K+C  + D   G+ +     K 
Sbjct: 141 LIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKR 200

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D FV  SL+HMY   G    A  LF  + V+   +WNAMI+GY ++G+  E +++ 
Sbjct: 201 GFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMF 260

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M       D +T+ S+   C R  +   G  I  Y  + G+  +  ++  L++MYAK 
Sbjct: 261 KGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKC 320

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M  RDVV+W+++I+ Y QS+    A   F  MQ   + P+ +T+VS+ 
Sbjct: 321 GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVL 380

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L      + VH +I R+   +  VI+G A+VD YAK G I  A   FE +PV++ 
Sbjct: 381 SACAVLGALETGKWVHSYIRRKDLPL-TVILGTALVDFYAKCGCIKDAVKAFESMPVRNT 439

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            +W  LI G A NG + EA+E+F  M E N I P   T++ +L A SH   + +G +   
Sbjct: 440 WTWTALIKGMASNGRSREALELFSSMLEAN-IEPTDVTFIGVLLACSHGCLVEEGRRHFT 498

Query: 358 RVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ- 414
            + ++  +C  +    C+VD+ G+ G ID+A      +P   ++V W A++S   +H   
Sbjct: 499 SMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNV 558

Query: 415 --GDKALN 420
             G++AL 
Sbjct: 559 EIGEEALK 566


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/687 (37%), Positives = 400/687 (58%), Gaps = 29/687 (4%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF-GL 78
           L SG  PD   FP VLK+C   ++L  G+ +H  +++LG  +D++   +L++MY +F  L
Sbjct: 2   LASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSL 61

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
                + F D  +   G       G C + + +     LDE R+ G+  +          
Sbjct: 62  EEGGVQRFCDSKML-GGIPEPREIGKCSNSHDLPCE--LDE-RVAGIDQNGD-------- 109

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
             +  NIL  +  +  +   G   +++      + Y   G +R   +VF+ M +RD+VSW
Sbjct: 110 LNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY--LGSLR---KVFEMMPKRDIVSW 164

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N++I+   Q+     A      M  A ++PD  TL S+  I A+  +    + +HG+ +R
Sbjct: 165 NTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR 224

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G +  DV IG++++DMYAK   ++ +C VF  LP  D ISWN++I G  QNG+  E ++
Sbjct: 225 NG-YDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 283

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            FQ M    +I PN  ++ SI+PA +H+  L  G ++H  +I++    +VF+A+ LVDMY
Sbjct: 284 FFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 342

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG I  A  +F ++     V W A+I  + +HG    A++ F++M  EGV+P+++ F+
Sbjct: 343 AKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFM 402

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           ++LTACSH+GLV E  +YF+ M +++ I P L+HY  + DL GR G L  A+ FI +M +
Sbjct: 403 AVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHI 462

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P  S+W  LL ACR+H N+EL    S +LF VD +N+G YVL+SNIY+  G+W+   ++
Sbjct: 463 EPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKL 522

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R   RD+G+KK P  S IE+ NKV  F  G+++HP Y++I + L+ L  +M+  GYV D 
Sbjct: 523 RIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDT 582

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
           + VL DVEE++K ++L SHSERLAI FGIIS+P  + I++ KNLRVC DCH  TKFIS+I
Sbjct: 583 TEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKI 642

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
             REI+      F+ F D +      W
Sbjct: 643 VGREIV------FYFFLDEVGVLNVKW 663



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 109/213 (51%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+  V+ G   E +  F+Q  L + ++P+  +F  ++ AC +L     GK++H  +++ 
Sbjct: 268 IIAGCVQNGMFDEGLK-FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 326

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ +VF+A++L+ MY + G    AR +FD M + D  SW AMI GY   G+A +A+ + 
Sbjct: 327 RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLF 386

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLIN 172
             M +EGV  + +   ++L  C+ +  +         +   Y +  GLE    V++ L  
Sbjct: 387 KRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL-- 444

Query: 173 MYAKFGMMRHALR-VFDQMMERDVVSWNSIIAA 204
              + G +  A   + D  +E     W++++AA
Sbjct: 445 --GRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 475


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/681 (36%), Positives = 387/681 (56%), Gaps = 7/681 (1%)

Query: 30  DFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           ++ T   +L  C +   L  GK +H   +K G E ++ +  +LL +Y   G +  A  +F
Sbjct: 260 NYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIF 319

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             MP RD  SWN+M++ Y Q G  + AL +  EM      ++ +T  S L  C   +   
Sbjct: 320 RRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFT 379

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           +G ++H ++V  GL+  L + N LI  Y K   M  A +VF +M + D V+WN++I  + 
Sbjct: 380 NGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFA 439

Query: 207 QSNDPITAHGFFTTMQQAGIQP-DLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
            + +   A   F  M++      D +T+V+ L S +   +  +    +H   +  G F  
Sbjct: 440 NNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTG-FDL 498

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D  + ++++ MYAK G ++S+  +F+ L  K    WN +I   A+ G   EA+++   M 
Sbjct: 499 DQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMR 558

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
               I  +Q  + + L   + +  L +G ++H   IK     D F+    +DMYGKCG +
Sbjct: 559 SAG-IEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGEL 617

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           DDA+ +  Q    S + WN +IS    HGQ  KA   F  ML  GV+P+H++FV LL+AC
Sbjct: 618 DDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSAC 677

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH GLV EG  Y+  M   +GI+P ++H  CM+DL GR+G L  A  FI  MP+ P+  +
Sbjct: 678 SHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLV 737

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           W +LL +CRI+ N++LG  A+  L E+D  +   YVL SN++A +G+WE V++VR     
Sbjct: 738 WRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGA 797

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
             ++K P  S ++    + IF  G++THP+ E+I  +L  L   +   GYVPD S+ LQD
Sbjct: 798 HKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQD 857

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
            +E++KEH + SHSER+A+AFG+I+ P  S ++IFKNLRVCGDCH++ KF+S +  R+I+
Sbjct: 858 TDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIV 917

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           +RD  RFHHF +G CSC DYW
Sbjct: 918 LRDPYRFHHFTNGNCSCSDYW 938



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 271/524 (51%), Gaps = 15/524 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           M+S YVR G   EAV  F++     G++P  +    ++ AC        +G + H   +K
Sbjct: 29  MMSGYVRVGSYVEAV-LFFRDICGIGIKPSGFMIASLVTACNKSSIMAKEGFQFHGFAIK 87

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G  +DVFV  S +H Y  +G+ + A+K+F++MP R+  SW +++  Y  +G+  E ++ 
Sbjct: 88  CGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINT 147

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              MR EG+  +   +A ++  C    +I+ G  +  + +K GLE  +  +N+LI M+  
Sbjct: 148 YKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGG 207

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  +F++M ERD +SWNSII+A  Q+     +  +F  M+    + +  TL  L
Sbjct: 208 CGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSIL 267

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            SI   ++  +  + VHG  ++ G    ++ + N ++ +Y+  G    A  +F  +P +D
Sbjct: 268 LSICGSVDYLKWGKGVHGLAVKYG-LESNICLCNTLLSVYSDAGRSKDAELIFRRMPERD 326

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +ISWN+++  Y Q+G    A++VF +M+    EI  N  T+ S L A         G  +
Sbjct: 327 LISWNSMLACYVQDGRCLCALKVFAEMLWMKKEI--NYVTFTSALAACLDPEFFTNGKIL 384

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  V+   L  ++ +   L+  YGKC ++ +A  +F ++P+   V WNA+I     + + 
Sbjct: 385 HGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAEL 444

Query: 416 DKALNFFRQMLDEGVRP-DHITFVSLLTAC-SHSGLVSEG-QRYFHMMQEEFGIKPHLKH 472
           ++A+  F+ M +      D+IT V++L +C +H  L+  G   + H +   F +  H++ 
Sbjct: 445 NEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQ- 503

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              ++ ++ + G L  + ++I +  V   +S+W A++ A   +G
Sbjct: 504 -SSLITMYAKCGDL-HSSSYIFDQLVFKTSSVWNAIIAANARYG 545



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 232/476 (48%), Gaps = 8/476 (1%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +FG  N A+ +FD M  R+  SWN M+SGY + G+ VEA+    ++   G+      
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 132 VASILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           +AS++  C +S  +   G   H + +K GL +++FV  + ++ YA +G++ +A ++F++M
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +R+VVSW S++ +Y  +         +  M+  GI  +   +  + S    L D     
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            + G  ++ G     V   N+++ M+   G IN AC++F  +  +D ISWN++I+  AQN
Sbjct: 181 QLLGHALKFG-LETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQN 239

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
            L  E+   F  M   +E   N  T   +L     V  L+ G  +H   +K  L  ++ +
Sbjct: 240 TLHEESFRYFHWMRLVHE-EINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICL 298

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+ +Y   GR  DA  +F ++P    + WN++++C+   G+   AL  F +ML    
Sbjct: 299 CNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK 358

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             +++TF S L AC      + G +  H      G++  L     ++  +G+   +  A 
Sbjct: 359 EINYVTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAK 417

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELG-AVASDRLFEVDSENVGYYVLMSNI 545
              Q MP + D   W AL+G      N EL  AVA+ +L    S +   Y+ + NI
Sbjct: 418 KVFQRMP-KLDKVTWNALIGG--FANNAELNEAVAAFKLMREGSTSGVDYITIVNI 470


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/679 (38%), Positives = 395/679 (58%), Gaps = 23/679 (3%)

Query: 40   ACRNLVDGKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
            A + L  G+++H  VL+ G  +  + V+  L++MY + G  + A ++F  M  RD  SWN
Sbjct: 394  AEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWN 453

Query: 99   AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
             +I+   Q+G    A+     MR   +        S L  CA    + +G  +H   VK 
Sbjct: 454  TIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKW 513

Query: 159  GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH-GF 217
            GL  +  VSN L+ MY + G M     +F+ M   DVVSWNSI+     S  PIT     
Sbjct: 514  GLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQV 573

Query: 218  FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
            F+ M ++G+ P+ +T V+  + +  L+     + +H  +++ G   ED  + NA++  YA
Sbjct: 574  FSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHG-VTEDNAVDNALMSCYA 632

Query: 278  KLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVF-------QMMEECNEI 329
            K G ++S   +F  +   +D ISWN++I+GY  NG   EA++         QMM+ C   
Sbjct: 633  KSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHC--- 689

Query: 330  NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
                 T+  +L A + V AL +G+++HA  +++ L  DV V + LVDMY KCGRID A  
Sbjct: 690  -----TFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASK 744

Query: 390  LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
            +F+ + + +   WN++IS +  HG G KAL  F +M + G  PDH+TFVS+L+ACSH+GL
Sbjct: 745  VFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGL 804

Query: 450  VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            V  G  YF +M E++GI P ++HY C++DL GRAG L     +++ MP++P+  IW  +L
Sbjct: 805  VERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVL 863

Query: 510  GAC---RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
             AC   +    ++LG  AS  L E++ +N   YVL S  +A +G+WE   + R+  +   
Sbjct: 864  VACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAA 923

Query: 567  LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
            +KK  G S + + + V  F  G+R+HP  ++IY++L  L  K+++ GYVP   +VL D+E
Sbjct: 924  VKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLE 983

Query: 627  EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
            E+ KE +L  HSE+LA+AF +  S    PI+I KNLRVCGDCH   ++ISQI  R+II+R
Sbjct: 984  EENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILR 1043

Query: 687  DSNRFHHFKDGICSCGDYW 705
            DS RFHHFKDG CSCGDYW
Sbjct: 1044 DSIRFHHFKDGKCSCGDYW 1062



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 257/516 (49%), Gaps = 30/516 (5%)

Query: 26  GLRPDFYTFPPVLKACRN-----LVDGKKIHCSVLKLGFEWDVFVAASLLHMY--CRFGL 78
           G RP  +TF  VL+AC++     L    ++H  V K  F  +  V  +L+ MY  C  G 
Sbjct: 163 GCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGP 222

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE--GVSMDPI--TVAS 134
             +A+++FD  PVRD  +WNA++S Y + G+A+    +   M+ +  G+ + P   T  S
Sbjct: 223 PILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGS 282

Query: 135 ILPVCARSDNILSGLLIHLY--IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           ++     S   L GLL  L+  ++K G   +L+V + L++ +A+ GM+  A  ++  + E
Sbjct: 283 LITATYLSSCSL-GLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKE 341

Query: 193 RDVVSWNSIIAAY-EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC----R 247
           R+ V+ N +IA   +Q +    A  F      A +  D  T V L S +A+ +      R
Sbjct: 342 RNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD--TYVVLLSAIAEFSTAEQGLR 399

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
             R VH  ++R G     + + N +V+MYAK G I+ AC VF+ +  +D ISWNT+IT  
Sbjct: 400 KGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITAL 459

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            QNG    A+  + +M + N I P+    +S L + + +G L  G ++H   +K  L  D
Sbjct: 460 DQNGYCEAAMMNYCLMRQ-NSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD 518

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD----KALNFFR 423
             V+  LV MYG+CGR+ +   +F  +     V WN+I+   G+         +++  F 
Sbjct: 519 TSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIM---GVMASSQAPITESVQVFS 575

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            M+  G+ P+ +TFV+ L A +   ++  G++  H +  + G+         ++  + ++
Sbjct: 576 NMMKSGLVPNKVTFVNFLAALTPLSVLELGKQ-IHSVMLKHGVTEDNAVDNALMSCYAKS 634

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           G +         M  R DA  W +++     +G+++
Sbjct: 635 GDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQ 670



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 229/479 (47%), Gaps = 21/479 (4%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           + +H  V+K G   D+F+A  L++ Y +    + AR++FD MP R++ SW  +ISG+  S
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 108 GNAVEALDILDEMRLEGVSMDP--ITVASILPVCARS--DNILSGLLIHLYIVKHGLEFN 163
           G   +A  +   M  EG    P   T  S+L  C  S  D +   + +H  + K     N
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 164 LFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             V N LI+MY     G    A RVFD    RD+++WN++++ Y +  D I     F  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 222 Q--QAGIQ--PDLLTLVSLTSIVAQLNDCRNSRSVHGFI-MRRGWFMEDVIIGNAVVDMY 276
           Q   +GI+  P   T  SL +    L+ C        F+ + +     D+ +G+A+V  +
Sbjct: 265 QYDDSGIELRPTEHTFGSLIT-ATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           A+ G+++ A  ++ GL  ++ ++ N LI G  +      A E+F    +   +N +  TY
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD--TY 381

Query: 337 VSILPAYSHVG----ALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLF 391
           V +L A +        LR+G ++HA V++    +  + V+  LV+MY KCG ID A  +F
Sbjct: 382 VVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVF 441

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +     + WN II+    +G  + A+  +  M    + P +   +S L++C+  GL++
Sbjct: 442 QLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLA 501

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            GQ+  H    ++G+         +V ++G  G +        +M    D   W +++G
Sbjct: 502 AGQQ-LHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIMG 558



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 33/341 (9%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 67
           ++E+V  F    + SGL P+  TF   L A   L     GK+IH  +LK G   D  V  
Sbjct: 567 ITESVQVFSNM-MKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDN 625

Query: 68  SLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
           +L+  Y + G  +   +LF  M   RD+ SWN+MISGY  +G+  EA+D +  M      
Sbjct: 626 ALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQM 685

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           MD  T + +L  CA    +  G+ +H + ++  LE ++ V + L++MY+K G + +A +V
Sbjct: 686 MDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKV 745

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M +++  SWNS+I+ Y +      A   F  MQ++G  PD +T VS+ S  +     
Sbjct: 746 FHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACS----- 800

Query: 247 RNSRSVHGFIMRRGW----FMEDVII------GNAVVDMYAKLGIINSACAVFEGLPVK- 295
                 H  ++ RG      MED  I       + V+D+  + G ++      + +P+K 
Sbjct: 801 ------HAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKP 854

Query: 296 DVISWNTLITGYAQNG------LASEAIEVFQMMEECNEIN 330
           + + W T++    Q+       L +EA  +   +E  N +N
Sbjct: 855 NTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVN 895



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 188/392 (47%), Gaps = 35/392 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +HL +VK GL  +LF++N+L+N YAK   +  A RVFD M  R+ VSW  +I+ +  S  
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 211 PITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSR--------SVHGFIMRRG 260
           P  A   F  M  +  G +P   T  S+      L  C++S          VHG +  + 
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSV------LRACQDSGPDRLGFAVQVHGLV-SKT 199

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACA--VFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            F  +  + NA++ MY    +     A  VF+  PV+D+I+WN L++ YA+ G A     
Sbjct: 200 EFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFT 259

Query: 319 VFQMMEECN---EINPNQGTYVSILPAYSHVGALRQGI--KIHARVIKNCLCFDVFVATC 373
           +F+ M+  +   E+ P + T+ S++ A +++ +   G+  ++  RV+K+    D++V + 
Sbjct: 260 LFRAMQYDDSGIELRPTEHTFGSLITA-TYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSA 318

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRP 432
           LV  + + G +D+A  ++  +   ++V  N +I+       G+ A   F    D   V  
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNV 378

Query: 433 DHITFVSLLTACSHSGLVSEGQR-----YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           D  T+V LL+A +      +G R     + H+++    I   +     +V+++ + G + 
Sbjct: 379 D--TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGH-IYRKIAVSNGLVNMYAKCGAID 435

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            A    Q M  R   S W  ++ A   +G  E
Sbjct: 436 KACRVFQLMEARDRIS-WNTIITALDQNGYCE 466



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 5/213 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y+  G L EA+DC     + S    D  TF  VL AC +   L  G ++H   L+ 
Sbjct: 659 MISGYIYNGHLQEAMDCVC-LMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRS 717

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E DV V ++L+ MY + G  + A K+F  M  ++  SWN+MISGY + G   +AL+I 
Sbjct: 718 HLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIF 777

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM+  G S D +T  S+L  C+ +  +  GL     +  +G+   +   + +I++  + 
Sbjct: 778 EEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRA 837

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSN 209
           G +        +M M+ + + W +++ A +QS 
Sbjct: 838 GELDKIQEYMKRMPMKPNTLIWRTVLVACQQSK 870


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/748 (34%), Positives = 414/748 (55%), Gaps = 46/748 (6%)

Query: 1   MISVYVRCGRLSEAV--------------------------------DCFYQFTLTSGLR 28
           ++S+Y RCGR+ +A                                 DC      T+   
Sbjct: 105 LVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGGTAA-- 162

Query: 29  PDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD  T   VL  C  L     G+ +H   +K G++    V+  L+ MY + G    A   
Sbjct: 163 PDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECA 222

Query: 86  FDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCA 140
           F + P    R+  SWN M+ GY ++G A  A  +L EM++E  GV  D IT+ S+LPVC+
Sbjct: 223 FLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCS 282

Query: 141 RSDNILSGLLIHLYIVKHGLEFNL-FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
               +     +H ++V+ GL      V N LI  Y + G + HA RVFD +  + V SWN
Sbjct: 283 GLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWN 342

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           ++I A+ Q+ +   A   F  M  A G +PD  ++ SL      L    + ++ HGFI+R
Sbjct: 343 ALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILR 402

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G   +D  I  +++ +Y + G  + A  +F+ +  KD +SWNT+I GY+QNGL  E+++
Sbjct: 403 NG-LEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQ 461

Query: 319 VFQMMEECNEIN-PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F+ M+     + P+     S L A S + A+R G ++H   +K  LC D F+++ ++DM
Sbjct: 462 LFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDM 521

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG +DDA   F ++    +V W  +I+ + ++G+G +A+  + +M  EG+ PD  T+
Sbjct: 522 YSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTY 581

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           + LL AC H+G++ +G  +F  M+    I+  L+HY C++ +  RAG    A   ++ MP
Sbjct: 582 LGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMP 641

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
             PDA I  ++L AC +HG +ELG   +D+L E++     +YVL SN+YA   +W+ + +
Sbjct: 642 EEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRK 701

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           VR + RD G+ K PG S I++  KV  F  G  + P+  K+     +L  K+++ GY PD
Sbjct: 702 VRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPD 761

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
            + +L ++EE+EK   L  HSE+ AIAFG++ +   + +++FKN+R+C DCHN  K IS+
Sbjct: 762 TTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISK 821

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + +REI+VRD  RFHHF+DG+CSCGDYW
Sbjct: 822 VADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 275/556 (49%), Gaps = 24/556 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF 59
           +++   R GR ++A+    +    S G+ PD +T PP LK+CR   DG+++H    KLG 
Sbjct: 36  LLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG-DDGRQVHAVAAKLGL 94

Query: 60  -EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL-DIL 117
            + D FV  SL+ MY R G  + A K+F+ M  R+  SWNA+++        +E   D L
Sbjct: 95  ADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCL 154

Query: 118 DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           ++  L G +  D  T+ ++LP+CA      +G  +H   VK G +    VSN L++MYAK
Sbjct: 155 ED--LGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAK 212

Query: 177 FGMMRHALRVFDQM---MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ--QAGIQPDLL 231
            G M  A   F +      R+VVSWN ++  Y ++ +   A G    MQ  + G+  D +
Sbjct: 213 CGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEI 272

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T++S+  + + L +    R +H F++RRG  +   ++ NA++  Y + G +  AC VF+G
Sbjct: 273 TMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDG 332

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  K V SWN LI  +AQNG AS AIE+F+ M       P+  +  S+L A  ++  L  
Sbjct: 333 ICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLH 392

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G   H  +++N L  D F+   L+ +Y +CGR   A  LF  V     V WN +I+ +  
Sbjct: 393 GKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQ 452

Query: 412 HGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           +G   ++L  FR+M  +  G  P  +   S L ACS    V  G+   H     F +K  
Sbjct: 453 NGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKE-MHC----FALKAD 507

Query: 470 LKH----YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
           L         ++D++ + G +  A  F   +  + DA  W  ++    ++G  +      
Sbjct: 508 LCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAK-DAVSWTVMITGYAVNGRGKEAVGLY 566

Query: 526 DRLFEVDSENVGYYVL 541
           D++     E  G+  L
Sbjct: 567 DKMGREGMEPDGFTYL 582



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 189/362 (52%), Gaps = 20/362 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLY 154
           WN +++   ++G   +AL IL  +    +GV+ D  T+   L  C R D+   G  +H  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSC-RGDD---GRQVHAV 88

Query: 155 IVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             K GL + + FV N+L++MY + G +  A +VF+ M  R++VSWN+++AA     DP  
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA---DPRR 145

Query: 214 AHGFFT-TMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
               F   ++  G    PD  TLV++  + A L      R+VHG  ++ GW      + N
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPR-VSN 204

Query: 271 AVVDMYAKLG-IINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMME-EC 326
            +VDMYAK G + ++ CA  E  P   ++V+SWN ++ GYA+NG A  A  + + M+ E 
Sbjct: 205 VLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEE 264

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV-FVATCLVDMYGKCGRID 385
             +  ++ T +S+LP  S +  L +  ++HA V++  L      V   L+  YG+CG + 
Sbjct: 265 RGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLL 324

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTAC 444
            A  +F  +       WNA+I  H  +G+   A+  FR+M +  G +PD  +  SLL AC
Sbjct: 325 HACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLAC 384

Query: 445 SH 446
            +
Sbjct: 385 GN 386



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 148/331 (44%), Gaps = 33/331 (9%)

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQA--GIQPDLLTLVSLTSIVAQLNDCR--NSRSVH 253
           WN ++A   ++     A      +  A  G+ PD  TL         L  CR  + R VH
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPP------ALKSCRGDDGRQVH 86

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
               + G    D  +GN++V MY + G ++ A  VFEG+  ++++SWN L+   A     
Sbjct: 87  AVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD---P 143

Query: 314 SEAIEVFQ--MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              +E+F+  + +      P++ T V++LP  + +     G  +H   +K+       V+
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVS 203

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFR--QML 426
             LVDMY KCG + DA   F + P  +    V WN ++  +  +G+   A    R  QM 
Sbjct: 204 NVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQME 263

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQ-RYFHMMQEEFGIKPHLKHYGCMVD-----LF 480
           + GV  D IT +S+L  C  SGL    + R  H     F ++  L   G MV       +
Sbjct: 264 ERGVPADEITMLSVLPVC--SGLPELAKLRELH----AFVVRRGLHLTGDMVPNALIAAY 317

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           GR G L  A      +  +  +S W AL+GA
Sbjct: 318 GRCGCLLHACRVFDGICSKMVSS-WNALIGA 347


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/690 (36%), Positives = 390/690 (56%), Gaps = 23/690 (3%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           + P+L  C    +L   K +H  ++K G   D+FVA SL+++Y R G +  AR LFD+MP
Sbjct: 81  YVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMP 140

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            ++  +W A+I+GY  +   V AL++  EM   G      T+  +L  C  S NI  G  
Sbjct: 141 EKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQ 200

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA-YEQSN 209
           +H Y +K+G      + N+L  +Y K G +   +R F ++ +++V++W ++I+A  E  N
Sbjct: 201 VHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDEN 260

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                   F  M +  + P+  TL S+ S+     D    + V GF  + G    ++ + 
Sbjct: 261 YTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGC-ATNLPVK 319

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----------NGLASEAIE 318
           N+ + +Y + G    A  +FE +    VI+WN +I+G+AQ                +A++
Sbjct: 320 NSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALK 379

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F+ +   + + P+  T+ SIL   S + AL QG +IHA+ IK     DV V + LV+MY
Sbjct: 380 IFRDLVR-SAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMY 438

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG I+ A   F ++P  + V W ++IS +  HG+   A+  F  M+  G +P+ ITFV
Sbjct: 439 NKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFV 498

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           SLL+ACS++GLV E  RYF MMQ E+ I+P + HYGCM+D+F R G L  A+ FI+    
Sbjct: 499 SLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGF 558

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P+ +IW +L+  CR HGNMEL   A+DRL E+  + V  YVL+ N+Y + G+W  V  V
Sbjct: 559 EPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARV 618

Query: 559 RSLAR--DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
           R L++  D G+ +   W  I + +KV  F   +R+HP+  ++Y  L  L  K K++GY P
Sbjct: 619 RKLSKHEDLGILRDRSW--ITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEP 676

Query: 617 DKSFVLQDVEEDEKEHI--LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
            ++  L D EED K     L  HSERLA+A G++ +PP   ++I KN+ +C DCH+  KF
Sbjct: 677 YQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKF 736

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDY 704
            S +  REI+VRDS R H FKDG CSCGD+
Sbjct: 737 FSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 241/493 (48%), Gaps = 60/493 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQ---------------FTLTS---------------GLRPD 30
           +++VY+RCG   +A + F +               +TL S               G  P 
Sbjct: 119 LVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPS 178

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            YT   +L AC    N+  GK++H   +K G      +  SL  +Y + G      + F 
Sbjct: 179 DYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFK 238

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
            +P ++  +W  MIS   +  N  E  L++  +M    V  +  T+ S++ +C  S ++ 
Sbjct: 239 RIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMN 298

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  +  +  K G   NL V N+ + +Y + G    A+R+F++M +  V++WN++I+ + 
Sbjct: 299 LGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFA 358

Query: 207 QSNDPIT------AHGF-----FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           Q  D         + GF     F  + ++ ++PDL T  S+ S+ + +        +H  
Sbjct: 359 QIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQ 418

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
            ++ G F+ DV++ +A+V+MY K G I  A   F  +P + +++W ++I+GY+Q+G   +
Sbjct: 419 TIKTG-FLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHD 477

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TC 373
           AI++F+ M       PN+ T+VS+L A S+ G + + ++ +  +++N    +  +    C
Sbjct: 478 AIQLFEDMILAGA-KPNEITFVSLLSACSYAGLVEEAMR-YFDMMQNEYHIEPLMDHYGC 535

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVP----WNAIISCHGIHGQGDKALNFFRQMLDEG 429
           ++DM+ + GR+DDA +    + R    P    W+++++    HG  + A     ++L+  
Sbjct: 536 MIDMFVRLGRLDDAYAF---IKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE-- 590

Query: 430 VRPDHI-TFVSLL 441
           ++P  + T+V LL
Sbjct: 591 LKPKVVETYVLLL 603



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 204/420 (48%), Gaps = 20/420 (4%)

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           +A EA+ +L E    G S+       +L  C  + ++     +H ++VK G   ++FV+ 
Sbjct: 62  DAQEAMAMLKE----GQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVAT 117

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
           +L+N+Y + G  + A  +FD+M E++VV+W ++I  Y  ++ P+ A   F  M + G  P
Sbjct: 118 SLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYP 177

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
              TL  + S     ++    + VHG+ ++ G       IGN++  +Y K G + S    
Sbjct: 178 SDYTLGGMLSACVASHNIDLGKQVHGYTIKYGA-ASITSIGNSLCRLYTKSGNLESGIRA 236

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASE-AIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           F+ +P K+VI+W T+I+  A++   +E  + +F  M +  E+ PN+ T  S++       
Sbjct: 237 FKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLK-GEVMPNEFTLTSVMSLCGTSL 295

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            +  G ++     K     ++ V    + +Y + G  ++AM LF ++  +S + WNA+IS
Sbjct: 296 DMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMIS 355

Query: 408 CHG---------IHG--QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
                       +H   +G +AL  FR ++   ++PD  TF S+L+ CS    + +G++ 
Sbjct: 356 GFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQ- 414

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H    + G    +     +V+++ + G +  A      MP R   + W +++     HG
Sbjct: 415 IHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVT-WTSMISGYSQHG 473


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/698 (37%), Positives = 401/698 (57%), Gaps = 27/698 (3%)

Query: 23  LTSGLRPDFYTFPPVLKAC------RNLVDGKKIHCSVLKLGFEW--DVFVAASLLHMYC 74
           L SGLRP+ +T      AC      R+   G  +    +K GF W  DV V  +L+ M+ 
Sbjct: 138 LESGLRPNAFTLCAAAHACFPGELFRS--SGGTVLGFAIKTGF-WGTDVSVGCALIDMFA 194

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G    ARK+F+ +  R    W  MI+ Y Q G A +A+++   M  +G   D  T++S
Sbjct: 195 RNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALRVFDQMM 191
           ++  CA   +   G  +H  +++ GL  +  VS  L++MY K  M   M  A +VF +M 
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMP 314

Query: 192 ERDVVSWNSIIAAYEQ-SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
             +V+SW ++I+ Y Q       A      M    I+P+ LT  SL    A L+D  + R
Sbjct: 315 THNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGR 374

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI--TGYA 308
            +H  +M+      +V+ GNA+V MYA+ G +  A   F+ L  ++++S ++ I  TG +
Sbjct: 375 QIHARVMKTSIGNVNVV-GNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRS 433

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
               +S+         E  ++  +  T+ S+L A + VG   +G ++HA  IK     D 
Sbjct: 434 NASWSSQI--------ESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDK 485

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLD 427
            ++  LV MY +CG +DDA   F ++    +V  W +IIS    HG  ++AL+ F  M+ 
Sbjct: 486 GISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMIL 545

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            GV+P+ +T++++L+ACSH GLV EG+ YF  MQ++  + P ++HY CMVDL  R+G + 
Sbjct: 546 SGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQ 605

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A  FI  MP + DA +W  LLGACR + N+E+G +A+  + +++ ++   YVL+SN+YA
Sbjct: 606 EALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYA 665

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
           + G W+ V  +RSL R R L K  G S + V N +  F  G+ +HP+ ++IY +L  L  
Sbjct: 666 HGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIR 725

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           ++K +GYVPD S VL D+ +  KE  L  HSE++A+AFG+I++ P  PI+IFKNLRVC D
Sbjct: 726 EIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCAD 785

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K+IS+ T REII+RDSNRFH  KDG CSCG+YW
Sbjct: 786 CHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 157/532 (29%), Positives = 260/532 (48%), Gaps = 20/532 (3%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGY 104
           G+ +H  +L     + D  VA SLL MY + G    AR++FD M  +RD  SW AM    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGL-EF 162
            ++G   EAL +L EM   G+  +  T+ +    C   +    SG  +  + +K G    
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGT 181

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           ++ V   LI+M+A+ G +  A +VF+ ++ER VV W  +I  Y Q      A   F  M 
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G +PD  T+ S+ S  A+       + +H  ++R G  + D  +   +VDMY KL + 
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLG-LVSDTCVSCGLVDMYTKLQME 300

Query: 283 NS-ACA--VFEGLPVKDVISWNTLITGYAQ-NGLASEAIEVF-QMMEECNEINPNQGTYV 337
            S  CA  VF+ +P  +V+SW  LI+GY Q  G  + A+E+  +M+ E   I PN  TY 
Sbjct: 301 QSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNE--SIEPNHLTYS 358

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+L A +++     G +IHARV+K  +     V   LV MY + G +++A   F Q+   
Sbjct: 359 SLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYER 418

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           + +  ++ I   G  G+ + + +   + +D GV     TF SLL+A +  GL ++GQ+  
Sbjct: 419 NLLSTSSDI---GETGRSNASWSSQIESMDVGVST--FTFASLLSAAATVGLPTKGQQ-L 472

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H +  + G +        +V ++ R G+L  A      M    +   W +++ A   HG+
Sbjct: 473 HALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGH 532

Query: 518 MELG-AVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDRGL 567
            E   ++  D +      N   Y+ + +  ++VG   EG +  RS+ +D  L
Sbjct: 533 AERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRL 584



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 24/377 (6%)

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYA 308
           R++H  ++       D ++ N+++ MY+K G + +A  VF+G+  ++D++SW  +     
Sbjct: 63  RALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLT 122

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV---GAL--RQGIKIHARVIKNC 363
           +NG   EA+ +   M E   + PN  T    L A +H    G L    G  +    IK  
Sbjct: 123 RNGAEQEALVLLGEMLESG-LRPNAFT----LCAAAHACFPGELFRSSGGTVLGFAIKTG 177

Query: 364 L-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
               DV V   L+DM+ + G +  A  +F  +   + V W  +I+ +   G   KA+  F
Sbjct: 178 FWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELF 237

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
             ML++G  PD  T  S+++AC+  G    GQ+  H +    G+         +VD++ +
Sbjct: 238 LGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQ-LHSLVLRLGLVSDTCVSCGLVDMYTK 296

Query: 483 ---AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-Y 538
                 +  A    + MP     S W AL+      G  E  AV  + L E+ +E++   
Sbjct: 297 LQMEQSMECARKVFKRMPTHNVMS-WTALISGYVQCGGQENNAV--ELLCEMLNESIEPN 353

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           ++  S++          D  R +   R +K + G  ++ V N +   Y  +    +  K 
Sbjct: 354 HLTYSSLLKACANLSDQDSGRQI-HARVMKTSIGNVNV-VGNALVSMYAESGCMEEARKA 411

Query: 599 YDEL--RNLTAKMKSLG 613
           +D+L  RNL +    +G
Sbjct: 412 FDQLYERNLLSTSSDIG 428


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/516 (44%), Positives = 326/516 (63%), Gaps = 33/516 (6%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M   G++P+  TL ++    A +      +  H +I++ G F  DV++  A+V MYA+ G
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMG-FESDVVVQTALVHMYARCG 59

Query: 281 IINSACAVFEGLPVK-------------------------------DVISWNTLITGYAQ 309
            +  A  VF+ +  +                               DV+SW  +I GYAQ
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NG   E++ VF  M +   +  ++    S+L A + + AL  G + HA V+++    D+ 
Sbjct: 120 NGYGDESLNVFNQMRKTG-MKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V + LVDMY K G ++DA  +F ++P+ + V WN+II+    HG+G+ A+  F QML  G
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++P+ I+FV +L+ACSH+GLV+EG+ YF++M + +GI P + HY CM+DL GRAG L  A
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
            NFI  MPV PD S+WGALLGACRIHGN EL    ++ L  ++ +  G YVL+SNIYA  
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W+   +VR L +DRG+ K PG+S IEV   +  F  G  +HP+ ++I++ L +L+ KM
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKM 418

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           K+ GYVP+K+FVLQDVE+DEKE  L+ HSE+LAIAFGII++ P + I++ KNLRVCGDCH
Sbjct: 419 KAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCH 478

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              KFIS    R+I+VRD+NRFHHFKDG CSCGDYW
Sbjct: 479 TVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 35/337 (10%)

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM--- 179
           +GV  +  T+++++  CA   ++  G   H YI+K G E ++ V   L++MYA+ G    
Sbjct: 4   KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63

Query: 180 ----------------------------MRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
                                       M+ AL++F +M ERDVVSW ++IA Y Q+   
Sbjct: 64  AGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYG 123

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             +   F  M++ G++ D   + S+ S  A L      R  H ++++ G F  D+++G+A
Sbjct: 124 DESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSG-FALDIVVGSA 182

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +VDMYAK G +  AC VF+ +P ++ +SWN++ITG AQ+G  ++A+ +F+ M +   I P
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG-IKP 241

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           N+ ++V +L A SH G + +G      + +N  +  DV   TC++D+ G+ G +D+A + 
Sbjct: 242 NEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENF 301

Query: 391 FYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQML 426
              +P    V  W A++    IHG  + A      +L
Sbjct: 302 INGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLL 338



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 153/314 (48%), Gaps = 35/314 (11%)

Query: 26  GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G++P+ +T   V+KAC +   L  GK+ H  ++K+GFE DV V  +L+HMY R G    A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 83  RKLFDDMPVRDSGSWNAMIS-------------------------------GYCQSGNAV 111
             +FD M  R + +WNAMI+                               GY Q+G   
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
           E+L++ ++MR  G+  D   + S+L  CA    +  G   H Y+V+ G   ++ V + L+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           +MYAK G M  A +VFD+M +R+ VSWNSII    Q      A   F  M QAGI+P+ +
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           + V + S  +        R     + +    + DV     ++D+  + G ++ A     G
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 292 LPVK-DVISWNTLI 304
           +PV+ DV  W  L+
Sbjct: 305 MPVEPDVSVWGALL 318



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 128/270 (47%), Gaps = 17/270 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y + G   E+++ F Q   T G++ D +    VL AC +L     G++ H  V++ 
Sbjct: 113 VIAGYAQNGYGDESLNVFNQMRKT-GMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS 171

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ V ++L+ MY + G    A ++FD MP R+  SWN++I+G  Q G   +A+ + 
Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLF 231

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
           ++M   G+  + I+   +L  C+ +  +  G    +L    +G+  ++     +I++  +
Sbjct: 232 EQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGR 291

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDP-----ITAHGFFTTMQQAGIQPDL 230
            G +  A    + M +E DV  W +++ A     +      I  H     +Q AGI    
Sbjct: 292 AGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI---- 347

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
              V L++I A      ++  V   +  RG
Sbjct: 348 --YVLLSNIYAAAGQWDDAAKVRKLMKDRG 375


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 386/662 (58%), Gaps = 8/662 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK---ACRNLVDGKKIHCSVLKL 57
           ++S Y + G   E+V  F +     G+R D YTF  VLK   A   + + K++H  VLKL
Sbjct: 129 LMSEYAKIGNYRESVGLFEKMQ-ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKL 187

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF     V  SL+  Y + G    AR LFD++  RD  SWN+MISG   +G +   L+  
Sbjct: 188 GFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFF 247

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV +D  T+ ++L  CA   N+  G  +H Y VK G    +  +N L++MY+K 
Sbjct: 248 IQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKC 307

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF +M E  +VSW SIIAA+ +      A G F  MQ  G++PD+  + S+ 
Sbjct: 308 GNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVV 367

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A  N     R VH  I ++     ++ + NA+++MYAK G +  A  +F  LPVK++
Sbjct: 368 HACACSNSLDKGREVHNHI-KKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNI 426

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWNT+I GY+QN L +EA+++F  M++  ++ P+  T   +LPA + + AL +G +IH 
Sbjct: 427 VSWNTMIGGYSQNSLPNEALQLFLDMQK--QLKPDDVTMACVLPACAGLAALEKGREIHG 484

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +++     D+ VA  LVDMY KCG +  A  LF  +P+   + W  +I+ +G+HG G +
Sbjct: 485 HILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKE 544

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M   G+ P+  +F S+L AC+HSGL+ EG + F  M+ E  I+P L+HY CMV
Sbjct: 545 AISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMV 604

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R+G+L  A+ FI+ MP++PDA+IWGALL  CRIH ++EL    ++ +FE++ EN  
Sbjct: 605 DLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTR 664

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL++N+YA   KWE V +++      GLK   G S IEV  K +IF+ G+ +HP+ + 
Sbjct: 665 YYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKM 724

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   LR LT KM   GY     + L + ++  KE +L +HSE+LA+   + ++P    + 
Sbjct: 725 IDSLLRKLTMKMNRGGYSNKIKYALINADDRLKEVLLCAHSEKLAM-LQVDATPHTKKVT 783

Query: 658 IF 659
            F
Sbjct: 784 CF 785



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 252/492 (51%), Gaps = 12/492 (2%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           +  T+  VL+ C   ++L DGK++H  +   G   D  + A L+ MY   G     R++F
Sbjct: 56  ELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIF 115

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D +       WN ++S Y + GN  E++ + ++M+  G+  D  T   +L   A S  + 
Sbjct: 116 DGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVR 175

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
               +H Y++K G      V N+LI  Y K G +  A  +FD++ +RDVVSWNS+I+   
Sbjct: 176 ECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCT 235

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            +        FF  M   G+  D  TLV++    A + +    R++H + ++ G F   V
Sbjct: 236 MNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAG-FSGGV 294

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +  N ++DMY+K G +N A  VF  +    ++SW ++I  + + GL  EAI +F  M+  
Sbjct: 295 MFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQS- 353

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P+     S++ A +   +L +G ++H  + KN +  ++ V+  L++MY KCG +++
Sbjct: 354 KGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEE 413

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F Q+P  + V WN +I  +  +   ++AL  F  M  + ++PD +T   +L AC+ 
Sbjct: 414 ANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAG 472

Query: 447 SGLVSEGQR-YFHMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
              + +G+  + H++++ +    H+    C +VD++ + G L +A      +P + D  +
Sbjct: 473 LAALEKGREIHGHILRKGYFSDLHV---ACALVDMYVKCGLLVLAQQLFDMIP-KKDMIL 528

Query: 505 WGALLGACRIHG 516
           W  ++    +HG
Sbjct: 529 WTVMIAGYGMHG 540


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/735 (33%), Positives = 414/735 (56%), Gaps = 66/735 (8%)

Query: 18   FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
             Y FTL++         PP L           +H   +K G    +  A  LL +Y +  
Sbjct: 296  LYHFTLSNS--------PPPLGT---------LHALYVKNGSLQTLNPANHLLTLYAKSN 338

Query: 78   LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
                A+KLFD++P R++ +W  +ISG+ ++G++    ++  EM+ +G   +  T++S+L 
Sbjct: 339  NMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLK 398

Query: 138  VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
             C+  +N+  G  +H +++++G++ ++ + N+++++Y K  +  +A R+F+ M E DVVS
Sbjct: 399  CCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVS 458

Query: 198  WNSIIAAYEQSNDPITAHGFFTT-------------------------------MQQAGI 226
            WN +I AY ++ D   +   F                                 M + G 
Sbjct: 459  WNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGT 518

Query: 227  QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            +   +T      + + L+     R +HG +++ G F  D  I +++V+MY K G ++ A 
Sbjct: 519  EFSAVTFSIALILASSLSHVELGRQLHGMVLKFG-FDSDGFIRSSLVEMYCKCGRMDKAS 577

Query: 287  AVFEGLPV----------------KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
             +   +P+                  ++SW ++++GY  NG   + ++ F++M     + 
Sbjct: 578  IILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVR-ELVV 636

Query: 331  PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
             +  T  +I+ A ++ G L  G  +HA V K     D +V + L+DMY K G +DDA  +
Sbjct: 637  VDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMV 696

Query: 391  FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
            F Q    + V W ++IS + +HGQG  A+  F +ML++G+ P+ +TF+ +L ACSH+GL+
Sbjct: 697  FRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLI 756

Query: 451  SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             EG RYF MM++ + I P ++H   MVDL+GRAGHL    NFI    +    S+W + L 
Sbjct: 757  EEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLS 816

Query: 511  ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            +CR+H N+E+G   S+ L +V   + G YVL+SN+ A+  +W+    VRSL   RG+KK 
Sbjct: 817  SCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQ 876

Query: 571  PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
            PG S I++ +++  F  G+R+HP+ ++IY  L  L  ++K +GY  D   V+QDVEE++ 
Sbjct: 877  PGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQG 936

Query: 631  EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
            E +++ HSE+LA+ FGII++  ++PI+I KNLR+C DCHN+ K+ SQ+ +REIIVRD +R
Sbjct: 937  EVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHR 996

Query: 691  FHHFKDGICSCGDYW 705
            FHHFK G CSCGDYW
Sbjct: 997  FHHFKHGSCSCGDYW 1011



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 236/523 (45%), Gaps = 61/523 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS + R G  SE V   ++     G  P+ YT   VLK C    NL  GK +H  +L+ 
Sbjct: 361 LISGFARAGS-SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRN 419

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DV +  S+L +Y +  +   A +LF+ M   D  SWN MI  Y ++G+  ++LD+ 
Sbjct: 420 GIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMF 479

Query: 118 DEMRLE-------------------------------GVSMDPITVASILPVCARSDNIL 146
             +  +                               G     +T +  L + +   ++ 
Sbjct: 480 RRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVE 539

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA----------------LRVFDQM 190
            G  +H  ++K G + + F+ ++L+ MY K G M  A                 RV  + 
Sbjct: 540 LGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE 599

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +  +VSW S+++ Y  +         F  M +  +  D+ T+ ++ S  A        R
Sbjct: 600 PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGR 659

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VH ++ + G  + D  +G++++DMY+K G ++ A  VF      +++ W ++I+GYA +
Sbjct: 660 HVHAYVQKIGHRI-DAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALH 718

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G    AI +F+ M     I PN+ T++ +L A SH G + +G + + R++K+  C +  V
Sbjct: 719 GQGMHAIGLFEEMLN-QGIIPNEVTFLGVLNACSHAGLIEEGCR-YFRMMKDAYCINPGV 776

Query: 371 ATC--LVDMYGKCGRIDDAMSLFYQ--VPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
             C  +VD+YG+ G +    +  ++  +   +SV W + +S   +H   +    +  +ML
Sbjct: 777 EHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSV-WKSFLSSCRLHKNVEMG-KWVSEML 834

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +    D   +V L   C+ +    E  R   +M +  G+K  
Sbjct: 835 LQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQR-GVKKQ 876


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 399/667 (59%), Gaps = 14/667 (2%)

Query: 47   GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G+++H  + + G  +  + +  +L++MY +    + A  +F  MP +D+ SWN+MISG  
Sbjct: 474  GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
             +    EA+     M+  G+     +V S L  C+    +  G  IH    K GL+ ++ 
Sbjct: 534  HNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVS 593

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA---YEQSNDPITAHGFFTTMQ 222
            VSN L+ +YA+   +    +VF QM E D VSWNS I A   YE S   + A  +F  M 
Sbjct: 594  VSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEAS--VLQALKYFLEMM 651

Query: 223  QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
            QAG +P+ +T +++ + V+  +       +H  I++     +D  I NA++  Y K   +
Sbjct: 652  QAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYS-VADDNAIENALLAFYGKCEQM 710

Query: 283  NSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSIL 340
                 +F  +  + D +SWN++I+GY  +G+  +A++ V+ MM+   +++    T+ ++L
Sbjct: 711  EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGF--TFATVL 768

Query: 341  PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
             A + V  L +G+++HA  ++ CL  DV V + LVDMY KCG+ID A   F  +P  +  
Sbjct: 769  SACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIY 828

Query: 401  PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
             WN++IS +  HG G KAL  F +M   G  PDH+TFV +L+ACSH GLV EG ++F  M
Sbjct: 829  SWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSM 888

Query: 461  QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NM 518
             E +G+ P ++H+ CMVDL GRAG +    +FI+ MP+ P+  IW  +LGA CR +G N 
Sbjct: 889  GEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNT 948

Query: 519  ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            ELG  A+  L E++ +N   YVL+SN++A  G WE V E R   R   +KK  G S + +
Sbjct: 949  ELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNM 1008

Query: 579  NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
             + V +F  G++THP+ EKIY++L+ L  K++  GYVP+  + L D+E + KE +L+ HS
Sbjct: 1009 KDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHS 1068

Query: 639  ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
            E+LAIAF +++   + PI+I KNLRVCGDCH   K+IS+I  R+II+RDSNRFHHF  G+
Sbjct: 1069 EKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGM 1127

Query: 699  CSCGDYW 705
            CSCGDYW
Sbjct: 1128 CSCGDYW 1134



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 146/529 (27%), Positives = 271/529 (51%), Gaps = 27/529 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN-----LVDGKKIHCSVL 55
           +IS Y +  R+ +     ++  ++SGL P+ +     L+AC+      +  G +IH  + 
Sbjct: 212 LISGYTQ-NRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFIC 270

Query: 56  KLGFEWDVFVAASLLHMY--CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
           KL    D+ ++  L+ MY  C  G  + A ++FD++  R+S +WN++IS YC+ G+AV A
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCS-GSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329

Query: 114 LDILDEMRLEGVSMD----PITVASIL-PVCARSDN---ILSGLLIHLYIVKHGLEFNLF 165
             +   M++EGV ++      T+ S++   C+ +D    +L  +L    I K G   +L+
Sbjct: 330 FKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR--IEKSGFLRDLY 387

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V + L+N +A++G+M  A  +F QM +R+ V+ N ++    + +    A   F  M+   
Sbjct: 388 VGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL- 446

Query: 226 IQPDLLTLVSLTSIVAQLNDC----RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           ++ +  +LV L S   + ++     R  + VH ++ R G     + IGNA+V+MY K   
Sbjct: 447 VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTA 506

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I++AC+VF+ +P KD +SWN++I+G   N    EA+  F  M+  N + P+  + +S L 
Sbjct: 507 IDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKR-NGMVPSNFSVISTLS 565

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           + S +G L  G +IH    K  L  DV V+  L+ +Y +   I++   +F+Q+P    V 
Sbjct: 566 SCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVS 625

Query: 402 WNAIISCHGIHGQGD-KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN+ I     +     +AL +F +M+  G RP+ +TF+++L A S   ++  G +  H +
Sbjct: 626 WNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHAL 684

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             ++ +         ++  +G+   +         M  R D   W +++
Sbjct: 685 ILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 145/493 (29%), Positives = 255/493 (51%), Gaps = 31/493 (6%)

Query: 39  KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           K   +L D   +H  + K GF  DVF   +L+++Y R G    ARKLFD+MP ++  SW+
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWS 210

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIV 156
            +ISGY Q+    EA  +   +   G+  +   V S L  C +  S  I  G+ IH +I 
Sbjct: 211 CLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFIC 270

Query: 157 KHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K     ++ +SN L++MY+   G +  A RVFD++  R+ V+WNSII+ Y +  D ++A 
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAF 330

Query: 216 GFFTTMQQAGIQ----PDLLTLVSLTSIVAQLNDCRNSRSVHGFIM--------RRGWFM 263
             F+ MQ  G++    P+  TL SL +    L DC       G ++         +  F+
Sbjct: 331 KLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADC-------GLVLLEQMLTRIEKSGFL 383

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D+ +G+A+V+ +A+ G+++ A  +F+ +  ++ ++ N L+ G A+     EA +VF+ M
Sbjct: 384 RDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM 443

Query: 324 EECNEINPNQGTYVSILPAYSHVGAL----RQGIKIHARVIKNCLC-FDVFVATCLVDMY 378
           ++  EIN    + V +L  ++    L    R+G ++HA + ++ L    + +   LV+MY
Sbjct: 444 KDLVEINSE--SLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMY 501

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           GKC  ID+A S+F  +P   +V WN++IS    + + ++A++ F  M   G+ P + + +
Sbjct: 502 GKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVI 561

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S L++CS  G ++ G R  H    ++G+   +     ++ L+     +         MP 
Sbjct: 562 STLSSCSSLGWLTLG-RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP- 619

Query: 499 RPDASIWGALLGA 511
             D   W + +GA
Sbjct: 620 EYDQVSWNSFIGA 632



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y+  G L +A+D  +   +  G + D +TF  VL AC +   L  G ++H   ++ 
Sbjct: 732 MISGYLHSGILHKAMDLVWPM-MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRA 790

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E DV V ++L+ MY + G  + A + F+ MPVR+  SWN+MISGY + G+  +AL I 
Sbjct: 791 CLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIF 850

Query: 118 DEMRLEGVSMDPITVASILPVCA 140
             M+  G S D +T   +L  C+
Sbjct: 851 TRMKQHGQSPDHVTFVGVLSACS 873



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%)

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
           Y    +L     +H ++ K     DVF    L+++Y + G +  A  LF ++P+ + V W
Sbjct: 150 YKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSW 209

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           + +IS +  +   D+A + F+ ++  G+ P+H    S L AC   G
Sbjct: 210 SCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/625 (38%), Positives = 376/625 (60%), Gaps = 2/625 (0%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCA 140
           A  +F    V D  +WN+M+  +  S     AL    EM     ++ D  T  S+L  CA
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
                  G ++H  +VK+ L  +L++   L+NMYA  G ++ A  +F++M  R+ V W S
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I+ Y +++ P  A   +  M++ G  PD +T+ +L S  A+L D      +H  I R  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-REM 209

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
                 ++G+A+V+MYAK G + +A  VF+ L  KDV +W+ LI GY +N  ++EA+++F
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + +   + + PN+ T ++++ A + +G L  G  +H  + +      V +   L+DM+ K
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG ID A  +F  +     + WN++++   +HG G +AL  F  M    ++PD ITF+ +
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGV 389

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           LTACSH+GLV EG++ F+ ++  +G++   +HYGCMVDL  RAG L  A  FI+ MP++P
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
           D +IWG++LGACR++ N+ELG  A+  L E++  N G Y+L+SNIYA    W  V +VR 
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRE 509

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
           L  ++G++KTPG SS+ ++N    F  G+ +HP+  +I   LR +  K+K +GYV D S 
Sbjct: 510 LMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSE 569

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           VL ++++++KE  ++ HSE+LA+ +G++ S     I I KNLRVC DCH   K +S+I +
Sbjct: 570 VLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQ 629

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           R+I +RD NRFHHFKDG CSC DYW
Sbjct: 630 RQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 226/405 (55%), Gaps = 17/405 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  +V       A+  + +    S   PD +TFP +LK C  L++   GK +H  V+K 
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKY 108

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D+++  +LL+MY   G    AR LF+ M  R+   W +MISGY ++    EAL + 
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  +G S D +T+A+++  CA   ++  G+ +H +I +  ++    + + L+NMYAK 
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G ++ A +VFDQ+ ++DV +W+++I  Y ++N    A   F  +   + ++P+ +T++++
Sbjct: 229 GDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288

Query: 237 TSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            S  AQL D    R VH +I R  +G     V + N+++DM++K G I++A  +F+ +  
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKG---HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD+ISWN+++ G A +GL  EA+  F +M+   ++ P++ T++ +L A SH G +++G K
Sbjct: 346 KDLISWNSMVNGLALHGLGREALAQFHLMQT-TDLQPDEITFIGVLTACSHAGLVQEGKK 404

Query: 355 IHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP 395
           +   +      + V + +    C+VD+  + G + +A      +P
Sbjct: 405 LFYEIEA---LYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 179/339 (52%), Gaps = 10/339 (2%)

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIV 240
           +A  VF      DV++WNS++ A+  SN P  A   +T M +++   PD  T  SL    
Sbjct: 30  YAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A L + +  + +HG +++      D+ I   +++MYA  G + SA  +FE +  ++ + W
Sbjct: 90  ALLLEFKVGKVLHGQVVKY-MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            ++I+GY +N   +EA+ +++ MEE +  +P++ T  +++ A + +  L  G+K+H+ + 
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEE-DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           +  +     + + LV+MY KCG +  A  +F Q+       W+A+I  +  + +  +AL 
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQ 267

Query: 421 FFRQML-DEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYGCMV 477
            FR++     +RP+ +T +++++AC+  G +  G R+ H  + + + G    L +   ++
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNN--SLI 324

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           D+F + G +  A     +M  + D   W +++    +HG
Sbjct: 325 DMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALHG 362



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 116/228 (50%), Gaps = 2/228 (0%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A +VF    V DV++WN+++  +  + +   A++ +  M E +   P++ T+ S+L 
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
             + +   + G  +H +V+K  L  D+++ T L++MY  CG +  A  LF ++   + V 
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W ++IS +  +   ++AL  +++M ++G  PD +T  +L++AC+    +  G +  H   
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMK-LHSHI 206

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            E  +K        +V+++ + G L  A      +  + D   W AL+
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK-DVYAWSALI 253


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/652 (37%), Positives = 383/652 (58%), Gaps = 4/652 (0%)

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           +LG+  + F+   L+ +Y +    + A  +F  +  ++  SW  M++ + ++ +      
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
               M L+G++   + ++  L  C  +  I  G  I L I+  G+E    V   L+++Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G    A  VF +M  RDVV+W++++AAY ++  P  A G F  M   G+ P+ +TLVS
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
                A L D R+   +H  +  +G     V++G A+V++Y K G I +A   F  +  K
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQG-IQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEK 241

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +V++W+ +   YA+N    +AI V   M+    + PN  T+VS+L A + + AL+QG +I
Sbjct: 242 NVVAWSAISAAYARNDRNRDAIRVLHRMD-LEGLAPNSTTFVSVLDACAAIAALKQGRRI 300

Query: 356 HAR--VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           H R  V+   L  DV+V T LV+MY KCG +  A ++F ++     V WN++I+ +  HG
Sbjct: 301 HERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHG 360

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
           Q +KAL  F +M  EG++P  ITF S+L ACSH+G++ +G+++F     + GI P  +H+
Sbjct: 361 QTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHF 420

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
           GCMVDL GRAG +  + + + +MP  P    W A LGACR + NM+    A++ LF++D 
Sbjct: 421 GCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDP 480

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
                YVL+SN+YA  G+W  V  +R   +     K  G S IEV ++V  F +G+  HP
Sbjct: 481 RKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHP 540

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           +  +I+ EL+ LT  MK+ GYVPD   VL DV+++ KE ++  HSE+LA+AF ++++P  
Sbjct: 541 RIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEG 600

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           SPI++ KNLRVC DCH  +KFIS++  REI+VRD NRFH F++G CSCGDYW
Sbjct: 601 SPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 227/460 (49%), Gaps = 16/460 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F++  L  G+ P        L AC   R +  G+ I  ++L  G E +  V  +L+ +Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    A  +F  M  RD  +W+AM++ Y ++G+  EAL +  +M L+GV+ + +T+ S
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
            L  CA   ++ SG L+H  +   G++  + V   L+N+Y K G +  A   F Q++E++
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+W++I AAY +++    A      M   G+ P+  T VS+    A +   +  R +H 
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 255 FIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            I   G  +E DV +  A+V+MY+K G +  A  +F+ +   D++ WN+LI   AQ+G  
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQT 362

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVAT 372
            +A+E+F+ M     + P   T+ S+L A SH G L QG K     I +   F +     
Sbjct: 363 EKALELFERM-RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFG 421

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKAL----NFFRQMLD 427
           C+VD+ G+ G I D+  L   +P     V W A +     +   D A+    N F+  LD
Sbjct: 422 CMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQ--LD 479

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              R  ++   ++    + +G  S+  R    MQ    +K
Sbjct: 480 PRKRAPYVLLSNMY---AKAGRWSDVARMRQAMQLFMTVK 516


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/744 (34%), Positives = 413/744 (55%), Gaps = 41/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +     EAV+ F+   L SG+ P+ YTF  +L AC   +D   G ++H  V+KL
Sbjct: 167 LISGFSKSDWEDEAVELFFAM-LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKL 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VF+  +L+ +YC+ G  ++  +LF++MP RD  SWN +IS   +     EA D  
Sbjct: 226 GLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYF 285

Query: 118 DEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M+L +G+ +D  +++++L  CA S   + G  +H   +K GLE +L VS++LI  Y K
Sbjct: 286 RGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTK 345

Query: 177 -------------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAY 205
                                          FGM+  A+ VF++M +R+ +S+N+++A  
Sbjct: 346 CGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGL 405

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            +++D   A   F  M + G++    TL S+ +    L   + S+ + GF+M+ G  + +
Sbjct: 406 SRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFG-ILSN 464

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMM 323
             I  A+VDMY + G +  A  +F    +++       ++I GYA+NG  +EAI +F   
Sbjct: 465 SCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSG 524

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    I  ++    SIL     +G    G+++H   +K+ L  +  V    V MY KC  
Sbjct: 525 QSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWN 584

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +DDA+ +F  +     V WN +++ H +H QGDKAL  +++M   G++PD ITF  +++A
Sbjct: 585 MDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISA 644

Query: 444 CSHS--GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             H+   LV   +  F  M+ E  IKP L+HY   + + GR G L  A   I+NMP+ PD
Sbjct: 645 YKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPD 704

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +W ALL +CRI+ N  L  +A+  +  V+ ++   Y+L SN+Y+  G+W   ++VR  
Sbjct: 705 VYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYYSEKVRED 764

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            R++G +K P  S I   NK+  FY  +R+HP+ + IY  L  L  +   +GYVPD SFV
Sbjct: 765 MREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGYVPDTSFV 824

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           LQ+VEE +K+  L  HS +LA  FGI+ + P  PIQI KN+R+CGDCHN+ K++S +T R
Sbjct: 825 LQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHNFLKYVSIVTRR 884

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           +I++RD++ FH F DG CSC DYW
Sbjct: 885 KILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 243/514 (47%), Gaps = 47/514 (9%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            + +H   LKL  E D+F+  +L+  Y + GL   A K+F  +   +  S+ A+ISG+ +
Sbjct: 116 ARAVHAQFLKL--EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSK 173

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           S    EA+++   M   G+  +  T  +IL  C R+ +   G  +H  +VK GL   +F+
Sbjct: 174 SDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFI 233

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AG 225
            N L+ +Y K G +   LR+F++M ERD+ SWN++I++  +      A  +F  MQ   G
Sbjct: 234 CNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKG 293

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++ D  +L +L +  A        + +H   ++ G     + + ++++  Y K G  N  
Sbjct: 294 LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVG-LESHLSVSSSLIGFYTKCGSANDV 352

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN------------- 332
             +FE +P++DVI+W  +IT Y + G+   A+EVF  M + N I+ N             
Sbjct: 353 TDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGS 412

Query: 333 -----------QG------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
                      +G      T  SI+ A   + + +   +I   V+K  +  +  + T LV
Sbjct: 413 RALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALV 472

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC----HGIHGQGDKALNFFRQMLDEG-V 430
           DMY +CGR++DA  +FYQ  RS    + A+++     +  +G+ ++A++ F     EG +
Sbjct: 473 DMYTRCGRMEDAEKIFYQ--RSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAI 530

Query: 431 RPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             D +   S+L+ C   G    G Q + H ++   G+          V ++ +  ++  A
Sbjct: 531 VMDEVMSTSILSLCGSIGFHEMGMQMHCHALKS--GLITETGVGNATVSMYSKCWNMDDA 588

Query: 490 HNFIQNMPVRPDASIWGALLGACRIH--GNMELG 521
                 M ++ D   W  L+    +H  G+  LG
Sbjct: 589 VRVFNTMNMQ-DIVSWNGLVAGHVLHWQGDKALG 621


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 353/556 (63%), Gaps = 3/556 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  ++K     + F+ + L++MY K G    A R+FD+M  +D+VSWNS+++       
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 211 PITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                  F  M+ ++G QP+ +TL+S+ S  A +      +S+HG +++ G   +  ++ 
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV- 202

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N++++MY KLG +++A  +FE +PV+ ++SWN+++  +  NG A + +++F +M+    I
Sbjct: 203 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-I 261

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           NP+Q T V++L A +  G  RQ   IHA + +     D+ +AT L+++Y K GR++ +  
Sbjct: 262 NPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASED 321

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++     + W A+++ + +H  G +A+  F  M+ EGV  DH+TF  LL+ACSHSGL
Sbjct: 322 IFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 381

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG++YF +M E + ++P L HY CMVDL GR+G L  A+  I++MP+ P + +WGALL
Sbjct: 382 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 441

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACR++GN+ELG   +++L  +D  +   Y+++SNIY+  G W    +VR+L ++R L +
Sbjct: 442 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 501

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IE  NK+  F  G++ HP+ ++I+ +L  L  K++  G  P   FVL D++E+ 
Sbjct: 502 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEV 561

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K  ++  HSE+LAIAFG++ +    P+ I KNLR+CGDCH+  KF S + +R II+RDS 
Sbjct: 562 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 621

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF DG+CSC DYW
Sbjct: 622 RFHHFADGLCSCRDYW 637



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 230/448 (51%), Gaps = 18/448 (4%)

Query: 27  LRPDFYTFPPV------LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           L P F  +  V      + +C ++     IH  V+K     D F+   L+ MY + G   
Sbjct: 55  LSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDE 114

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVC 139
            A++LFD+MP +D  SWN+++SG    G     L+    MR E G   + +T+ S++  C
Sbjct: 115 DAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 174

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A    +  G  +H  +VK G+     V N+LINMY K G +  A ++F++M  R +VSWN
Sbjct: 175 ADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWN 234

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           S++  +  +         F  M++AGI PD  T+V+L          R + S+H +I R 
Sbjct: 235 SMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 294

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F  D+II  A++++YAKLG +N++  +FE +  +D I+W  ++ GYA +    EAI++
Sbjct: 295 G-FNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKL 353

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK---IHARVIKNCLCFDVFVATCLVD 376
           F +M +   +  +  T+  +L A SH G + +G K   I + V +     D +  +C+VD
Sbjct: 354 FDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVD 410

Query: 377 MYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DH 434
           + G+ GR++DA  L   +P   SS  W A++    ++G  +       Q+L   + P DH
Sbjct: 411 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL--SLDPSDH 468

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQE 462
             ++ L    S +GL  +  +   +M+E
Sbjct: 469 RNYIMLSNIYSAAGLWRDASKVRALMKE 496



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKL 57
           M+ ++   G   + +D F      +G+ PD  T   +L+AC +   G++   IH  + + 
Sbjct: 236 MVVIHNHNGYAEKGMDLF-NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 294

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ +A +LL++Y + G  N +  +F+++  RD  +W AM++GY       EA+ + 
Sbjct: 295 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLF 354

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLIN 172
           D M  EGV +D +T   +L  C+ S  +  G     ++  +Y V+  L+      + +++
Sbjct: 355 DLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH----YSCMVD 410

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +  + G +  A  +   M ME     W +++ A
Sbjct: 411 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 443


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 352/556 (63%), Gaps = 3/556 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  ++K     + F+ + L++MY K G    A R+FD+M  RD+VSWNS+++       
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 211 PITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                  F  M+ ++G QP+ +TL+S+ S  A +      +S+HG +++ G   +  ++ 
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVV- 279

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N++++MY KLG +++A  +FE +PV+ ++SWN+++  +  NG A + +++F +M+    I
Sbjct: 280 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-I 338

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           NP+Q T V++L A +  G  RQ   IHA + +     D+ +AT L+++Y K GR++ +  
Sbjct: 339 NPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASED 398

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++    ++ W A+++ + +H  G +A+  F  M+ EGV  DH+TF  LL+ACSHSGL
Sbjct: 399 IFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 458

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG++YF +M E + ++P L HY CMVDL GR+G L  A+  I++MP+ P + +WGALL
Sbjct: 459 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 518

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACR++GN+ELG   +++L  +D  +   Y+++SNIY+  G W    +VR L ++R L +
Sbjct: 519 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTR 578

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IE  NK+  F  G++ HP+ ++I+ +L  L  K+   G  P   FVL D++E+ 
Sbjct: 579 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEV 638

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K  ++  HSE+LAIAFG++ +    P+ I KNLR+CGDCH+  KF S + +R II+RDS 
Sbjct: 639 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 698

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF DG+CSC DYW
Sbjct: 699 RFHHFADGLCSCRDYW 714



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 224/432 (51%), Gaps = 12/432 (2%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           + +C ++     IH  V+K     D F+   L+ MY + G    A++LFD+MP RD  SW
Sbjct: 149 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSW 208

Query: 98  NAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           N+++SG    G     L+    MR E G   + +T+ S++  CA    +  G  +H  +V
Sbjct: 209 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVV 268

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K G+     V N+LINMY K G +  A ++F++M  R +VSWNS++  +  +        
Sbjct: 269 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 328

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M++AGI PD  T+V+L          R + S+H +I R G F  D+II  A++++Y
Sbjct: 329 LFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCG-FNADIIIATALLNLY 387

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           AKLG +N++  +FE +  +D I+W  ++ GYA +    EAI++F +M +   +  +  T+
Sbjct: 388 AKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTF 446

Query: 337 VSILPAYSHVGALRQGIK---IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
             +L A SH G + +G K   I + V +     D +  +C+VD+ G+ GR++DA  L   
Sbjct: 447 THLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVDLLGRSGRLEDAYELIKS 504

Query: 394 VP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS 451
           +P   SS  W A++    ++G  +       Q+L   + P DH  ++ L    S +GL  
Sbjct: 505 MPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS--LDPSDHRNYIMLSNIYSAAGLWR 562

Query: 452 EGQRYFHMMQEE 463
              +   +M+E 
Sbjct: 563 XASKVRXLMKER 574



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKL 57
           M+ ++   G   + +D F      +G+ PD  T   +L+AC +   G++   IH  + + 
Sbjct: 313 MVVIHNHNGYAEKGMDLF-NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 371

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ +A +LL++Y + G  N +  +F+++  RD+ +W AM++GY       EA+ + 
Sbjct: 372 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLF 431

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLIN 172
           D M  EGV +D +T   +L  C+ S  +  G     ++  +Y V+  L+      + +++
Sbjct: 432 DLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH----YSCMVD 487

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +  + G +  A  +   M ME     W +++ A
Sbjct: 488 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 520


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 385/667 (57%), Gaps = 5/667 (0%)

Query: 42  RNLVDGKKIHCS--VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           +NL  GK IH    V     E  +    SL++ Y +    ++A  LFD MP R+  SW+A
Sbjct: 43  KNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSA 102

Query: 100 MISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           +++GY  +G +++ + +L +M  EG VS +   +A  +  C     +  G   H  ++K 
Sbjct: 103 LMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKT 162

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G  F+ +V N L++MY+K  +++ A+ V++++   D+V++NSI+++  ++          
Sbjct: 163 GFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVL 222

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
            +M    ++ D +T V+  S+ A L D R    VHG ++       D  + +A+++MY K
Sbjct: 223 RSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSD-VECDAYVSSAIINMYGK 281

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G    A  VF+GL  ++V+ W  ++    QNG   EA+ +F  ME+ N +  N+ TY  
Sbjct: 282 CGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN-VKSNEFTYAV 340

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +L A + + A R G  +H    K+     V V   L++MY K G I+ A  +F  +    
Sbjct: 341 LLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRD 400

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            + WNA+I     HG G KAL  F+ ML     P+++TF  +L+AC H GLV EG  Y H
Sbjct: 401 IITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLH 460

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            + ++FG++P L+HY C+V L  + G L  A NF++  PV+ D   W  LL AC +H N 
Sbjct: 461 HLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNY 520

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            LG   ++ + E+D  +VG Y L+SNIYA   +W+GV +VR L RD+ +KK PG S IE+
Sbjct: 521 GLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEI 580

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            N   IF + +  HP Y + Y +++ L A +K LGY PD   VL DVE+++KE+ L+ HS
Sbjct: 581 GNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHS 640

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIA+G++  P ++ I + KNLR+C DCH+  + IS++T R I+VRD+NRFHHF+DG 
Sbjct: 641 EKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGR 700

Query: 699 CSCGDYW 705
           CSC DYW
Sbjct: 701 CSCLDYW 707


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 381/663 (57%), Gaps = 40/663 (6%)

Query: 75  RFGLANVARKLFDDMPVRDSGS-WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
           ++ L  + R+ F   P   SGS   A  +  C  G+  +A D         +  +P   +
Sbjct: 3   KYCLRPLTRRHFSTNP--SSGSELTAEFTNLCSKGHLKQAFDRFSSH----IWSEPSLFS 56

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL--------- 184
            +L  C   +++  G  +H  I+  G   + F+SN+L+N+Y+K G +  A+         
Sbjct: 57  HLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRK 116

Query: 185 ----------------------RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
                                 ++FD+M ER+V +WN+++A   Q        G F+ M 
Sbjct: 117 NIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMN 176

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G  PD   L S+    A L      R VHG++ + G F  ++++ +++  MY K G +
Sbjct: 177 ELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCG-FEFNLVVVSSLAHMYMKCGSL 235

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                +   +P ++V++WNTLI G AQNG   E ++ + MM+      P++ T+VS++ +
Sbjct: 236 GEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAG-FRPDKITFVSVISS 294

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S +  L QG +IHA VIK      V V + L+ MY +CG ++ ++ +F +      V W
Sbjct: 295 CSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCW 354

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +++I+ +G HG+G +A++ F QM  E +  + +TF+SLL ACSH GL  +G ++F +M E
Sbjct: 355 SSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVE 414

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           ++G+KP L+HY CMVDL GR G +  A   I++MPV+ D   W  LL AC+IH   E+  
Sbjct: 415 KYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMAR 474

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             S+ +F +D  +   YVL+SNI+A+  +W+ V +VR   RDR LKK PG S +EV N++
Sbjct: 475 RISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQI 534

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F  G+++HPK  +I   LR LT++MK  GYVPD   VL D++ ++KE+ L  HSE+LA
Sbjct: 535 HQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLA 594

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAF ++ +P  +PI++ KNLRVC DCH   K+IS+I+ REIIVRDS+RFHHFK+G CSCG
Sbjct: 595 IAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCG 654

Query: 703 DYW 705
           DYW
Sbjct: 655 DYW 657



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 228/471 (48%), Gaps = 67/471 (14%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G L +A D F     +S +  +   F  +L++C    +L  GK++H  ++  G   D F+
Sbjct: 35  GHLKQAFDRF-----SSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFI 89

Query: 66  AASLLHMYCRFGLANVA-------------------------------RKLFDDMPVRDS 94
           +  LL++Y + G  + A                               RK+FD+MP R+ 
Sbjct: 90  SNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNV 149

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            +WNAM++G  Q     E L +   M   G   D   + S+L  CA    +++G  +H Y
Sbjct: 150 ATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGY 209

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           + K G EFNL V ++L +MY K G +    R+   M  ++VV+WN++IA   Q+  P   
Sbjct: 210 VRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEV 269

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              +  M+ AG +PD +T VS+ S  ++L      + +H  +++ G  +   +I ++++ 
Sbjct: 270 LDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVI-SSLIS 328

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY++ G +  +  VF      DV+ W+++I  Y  +G   EAI++F  ME+  ++  N  
Sbjct: 329 MYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQ-EKLEANDV 387

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-----------TCLVDMYGKCGR 383
           T++S+L A SH G   +GIK           FD+ V            TC+VD+ G+ G 
Sbjct: 388 TFLSLLYACSHCGLKEKGIKF----------FDLMVEKYGVKPRLEHYTCMVDLLGRYGS 437

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           +++A +L   +P ++  + W  ++S   IH + + A    R++ +E  R D
Sbjct: 438 VEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMA----RRISEEVFRLD 484


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 401/666 (60%), Gaps = 11/666 (1%)

Query: 47   GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G+++H  V++ G  +  V +   L++MY + G    A  +F+ M  +DS SWN++ISG  
Sbjct: 878  GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 937

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            Q+  + +A +    MR  G      T+ S L  CA    I+ G  IH   +K GL+ ++ 
Sbjct: 938  QNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 997

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQA 224
            VSN L+ +YA+ G     L+VF  M E D VSWNS+I A   S   ++ A  +F  M + 
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRG 1057

Query: 225  GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            G     +T +++ S V+ L+    S  +H  +++     +D  IGNA++  Y K G +N 
Sbjct: 1058 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY-CLSDDTAIGNALLSCYGKCGEMNE 1116

Query: 285  ACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPA 342
               +F  +   +D +SWN++I+GY  N L  +A++ V+ MM++   ++    T+ ++L A
Sbjct: 1117 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD--SFTFATVLSA 1174

Query: 343  YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
             + V  L +G+++HA  I+ C+  DV V + LVDMY KCGRID A   F  +P  +   W
Sbjct: 1175 CASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSW 1234

Query: 403  NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT-FVSLLTACSHSGLVSEGQRYFHMMQ 461
            N++IS +  HG G+KAL  F +M+ +G  PDH+   + +L+ACSH G V EG  +F  M 
Sbjct: 1235 NSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMS 1294

Query: 462  EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC-RIHG-NME 519
            E + + P ++H+ CMVDL GRAG L    +FI +MP++P+  IW  +LGAC R +G N E
Sbjct: 1295 EVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTE 1354

Query: 520  LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
            LG  A++ L E++ +N   YVL++N+YA+  KWE V + R   ++  +KK  G S + + 
Sbjct: 1355 LGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMK 1414

Query: 580  NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            + V +F  G++ HP+ + IYD+LR L  KM+  GY+P   + L D+E + KE +L+ HSE
Sbjct: 1415 DGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSE 1474

Query: 640  RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
            ++A+AF +++     PI+I KNLRVCGDCH+   +IS+I  R+I++RDSNRFHHF+DG C
Sbjct: 1475 KIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKC 1533

Query: 700  SCGDYW 705
            SCGDYW
Sbjct: 1534 SCGDYW 1539



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 157/529 (29%), Positives = 255/529 (48%), Gaps = 23/529 (4%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
            +IS Y + G+  EA   F    + +G  P+ Y F   L+AC+         G +IH  + 
Sbjct: 616  LISGYTQNGKPDEACARFRDM-VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLIS 674

Query: 56   KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            K  +  DV V   L+ MY      AN AR +FD + +R+S SWN++IS Y + G+ V A 
Sbjct: 675  KTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAY 734

Query: 115  DILDEMRLEGV--SMDP--ITVASIL-PVCARSDNILSGLLIHLYIV-KHGLEFNLFVSN 168
            D+   M+ EG+  S  P   T  S++   C+  D  L  L   L  V K G   +L+V +
Sbjct: 735  DLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGS 794

Query: 169  NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQ 227
             L++ +A+FG+   A  +F+QM  R+VVS N ++    +      A   F  M+   GI 
Sbjct: 795  ALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGIN 854

Query: 228  PD----LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             D    LL+  S  S++ +    R  R VH  ++R G     V IGN +V+MYAK G I 
Sbjct: 855  SDSYVVLLSAFSEFSVLEEGR--RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIA 912

Query: 284  SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
             AC+VFE +  KD +SWN+LI+G  QN  + +A E F  M     + P+  T +S L + 
Sbjct: 913  DACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSM-PSNFTLISTLSSC 971

Query: 344  SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
            + +G +  G +IH   +K  L  DV V+  L+ +Y + G   + + +F  +P    V WN
Sbjct: 972  ASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWN 1031

Query: 404  AII-SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            ++I +         +A+ +F +M+  G     +TF+++L+A S   L  E     H +  
Sbjct: 1032 SVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSL-HEVSHQIHALVL 1090

Query: 463  EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            ++ +         ++  +G+ G +         M    D   W +++  
Sbjct: 1091 KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 1139



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 240/481 (49%), Gaps = 21/481 (4%)

Query: 46   DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            + +++H   +K GF  ++F++ +L+++Y R G    A+KLFD+M  R+  +W  +ISGY 
Sbjct: 562  EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS--DNILSGLLIHLYIVKHGLEFN 163
            Q+G   EA     +M   G   +     S L  C  S       G+ IH  I K     +
Sbjct: 622  QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 681

Query: 164  LFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
            + V N LI+MY         A  VFD++  R+ +SWNSII+ Y +  D ++A+  F++MQ
Sbjct: 682  VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQ 741

Query: 223  QAGI----QPDLLTLVSLTSIVAQLND---CRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
            + G+    +P+  T  SL +      D   C   + +    + +  F++D+ +G+A+V  
Sbjct: 742  KEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLAR--VEKSGFLQDLYVGSALVSG 799

Query: 276  YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
            +A+ G+ + A  +FE + V++V+S N L+ G  +      A +VF  M++   IN +  +
Sbjct: 800  FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--S 857

Query: 336  YVSILPAYSHVGAL----RQGIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSL 390
            YV +L A+S    L    R+G ++HA VI+  L  + V +   LV+MY K G I DA S+
Sbjct: 858  YVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSV 917

Query: 391  FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
            F  +    SV WN++IS    +   + A   F +M   G  P + T +S L++C+  G +
Sbjct: 918  FELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWI 977

Query: 451  SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
              G++  H    + G+   +     ++ L+   G           MP   D   W +++G
Sbjct: 978  MLGEQ-IHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIG 1035

Query: 511  A 511
            A
Sbjct: 1036 A 1036



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 29/233 (12%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
            MIS Y+    L +A+D  + F +  G R D +TF  VL AC +   L  G ++H   ++ 
Sbjct: 1136 MISGYIHNELLHKAMDLVW-FMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRA 1194

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
              E DV V ++L+ MY + G  + A + F+ MP+R+  SWN+MISGY + G+  +AL + 
Sbjct: 1195 CMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLF 1254

Query: 118  DEMRLEGVSMDPIT-VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS--------- 167
              M L+G   D +  +  +L  C+           H+  V+ G E    +S         
Sbjct: 1255 TRMMLDGQPPDHVAPLLGVLSACS-----------HVGFVEEGFEHFKSMSEVYRLSPRV 1303

Query: 168  ---NNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHG 216
               + ++++  + G +       + M M+ +V+ W +++ A  ++N   T  G
Sbjct: 1304 EHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELG 1356



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%)

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T+ S++  Y       +  ++H + IK     ++F++  L+++Y + G +  A  LF ++
Sbjct: 546 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 605

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
              + V W  +IS +  +G+ D+A   FR M+  G  P+H  F S L AC  SG
Sbjct: 606 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 659


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/658 (37%), Positives = 370/658 (56%), Gaps = 80/658 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +N  I  +C+ GN   A++++++     + +   T  S+L +CA   +I  G  IH  I 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 157 KHGLEFN-------------------------------LFVSNNLINMYAKFGMMRHAL- 184
            + +E +                               +F+ N L+N YAK G  R +L 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 185 -----------------RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
                            ++FD++ +RDV+SWNS+I+ Y  +         F  M   GI 
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            DL T+VS+                            ++ + N ++DMY+K G +NSA  
Sbjct: 249 TDLATMVSV----------------------------ELTLNNCLLDMYSKSGNLNSAIQ 280

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VFE +  + V+SW ++I GYA+ GL+  ++ +F  ME+  ++ PN  T   ILPA + + 
Sbjct: 281 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EDLFPNSITMACILPACASLA 339

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL +G +IH  +++N    D  VA  LVDMY KCG +  A  LF  +P    V W  +I+
Sbjct: 340 ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 399

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G+HG G +A+  F +M + G+ PD ++F+S+L ACSHSGL+ EG  +F+MM+    I+
Sbjct: 400 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 459

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P  +HY C+VDL  RAG+L  A+ FI+ MP+ PDA+IWGALL  CRI+ +++L    ++ 
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           +FE++ EN GYYVL++NIYA   KWE V ++R     RGL+K PG S IE+  KV IF T
Sbjct: 520 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 579

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+ +HP   KI   L+    +MK  G+ P   + L   ++ EKE  L  HSE++A+AFGI
Sbjct: 580 GDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGI 639

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +S PP   +++ KNLRVCGDCH   KF+S++ +R+II+RDSNRFHHFKDG CSC  +W
Sbjct: 640 LSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 233/506 (46%), Gaps = 47/506 (9%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDF--YTFPPVLKAC---RNLVDGKKIHCSVLK 56
           I  +   G L  A++   Q       +PD    T+  VL+ C   +++ DG++IH  +  
Sbjct: 75  ICRFCELGNLRRAMELINQSP-----KPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQS 129

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E D  + + L+ MY   G     R++FD +       WN +++GY + GN  E+L +
Sbjct: 130 NDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSL 189

Query: 117 LDEMRLEGV--------------SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
              MR  G+                D I+  S++     +     GL +   ++  G+  
Sbjct: 190 FKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINT 249

Query: 163 N--------LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           +        L ++N L++MY+K G +  A++VF+ M ER VVSW S+IA Y +      +
Sbjct: 250 DLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 309

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  M++  + P+ +T+  +    A L      + +HG I+R G F  D  + NA+VD
Sbjct: 310 VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNG-FSLDRHVANALVD 368

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY K G +  A  +F+ +P KD++SW  +I GY  +G  SEAI  F  M     I P++ 
Sbjct: 369 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSG-IEPDEV 427

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFY 392
           +++SIL A SH G L +G      +  NC C +       C+VD+  + G +  A     
Sbjct: 428 SFISILYACSHSGLLDEGWGFFNMMRNNC-CIEPKSEHYACIVDLLARAGNLSKAYKFIK 486

Query: 393 QVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            +P    +  W A++    I+     A      + +  + P++  +  LL     + + +
Sbjct: 487 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFE--LEPENTGYYVLL-----ANIYA 539

Query: 452 EGQRYFHM--MQEEFGIKPHLKHYGC 475
           E +++  +  ++E  G +   K+ GC
Sbjct: 540 EAEKWEEVKKLRERIGRRGLRKNPGC 565



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 122/281 (43%), Gaps = 39/281 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y R G    +V  F++      L P+  T   +L AC +L     G++IH  +L+ 
Sbjct: 296 MIAGYAREGLSDMSVRLFHEME-KEDLFPNSITMACILPACASLAALERGQEIHGHILRN 354

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D  VA +L+ MY + G   +AR LFD +P +D  SW  MI+GY   G   EA+   
Sbjct: 355 GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAF 414

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN-------- 169
           +EMR  G+  D ++  SIL  C+      SGLL        G  F   + NN        
Sbjct: 415 NEMRNSGIEPDEVSFISILYACSH-----SGLL------DEGWGFFNMMRNNCCIEPKSE 463

Query: 170 ----LINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND-----PITAHGFFT 219
               ++++ A+ G +  A +    M +E D   W +++      +D      +  H F  
Sbjct: 464 HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFEL 523

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
             +  G        V L +I A+       + +   I RRG
Sbjct: 524 EPENTGY------YVLLANIYAEAEKWEEVKKLRERIGRRG 558


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 395/697 (56%), Gaps = 31/697 (4%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVL--------KLGFEW--DVFVAASLLHM 72
           L SGL P+ YT      AC       +++C V         K+G  W  DV V ++L+ M
Sbjct: 143 LESGLLPNAYTLCAAAHACFP----HELYCLVGGVVLGLVHKMGL-WGTDVAVGSALIDM 197

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
             R G    ARK+FD +  +    W  +IS Y Q   A EA+++  +   +G   D  T+
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTM 257

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALRVFDQ 189
           +S++  C    ++  GL +H   ++ GL  +  VS  L++MYAK  +   M +A +VF++
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFER 317

Query: 190 MMERDVVSWNSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           M + DV+SW ++I+ Y QS          F  M    I+P+ +T  S+    A ++D  +
Sbjct: 318 MPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDS 377

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R VH  +++         +GNA+V MYA+ G +  A  VF  L  + +I   T    + 
Sbjct: 378 GRQVHAHVIKSNQASAHT-VGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFP 436

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +        + +M     ++  +  T+ S++ A + VG L +G ++HA  +K     D 
Sbjct: 437 LDH------RIVRM-----DVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDR 485

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           FV+  LV MY +CG ++DA   F ++   + + W ++IS    HG  ++AL+ F  M+  
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           GV+P+ +T++++L+ACSH GLV EG+ YF  MQ + G+ P ++HY CMVDL  R+G +  
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKE 605

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A  FI  MP++ DA +W  LLGACR H N+E+G + +  + E++  +   YVL+SN+YA+
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYAD 665

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
            G W+ V  +RS  RD  L K  G S +EV N    F  G+ +HP+ + IY +L  L  +
Sbjct: 666 AGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQ 725

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           +K +GYVPD S VL D+ ++ KE  L  HSE++A+AFG+I++    PI+IFKNLRVC DC
Sbjct: 726 IKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADC 785

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H+  K++S+ T REII+RDSNRFH  KDG CSCG+YW
Sbjct: 786 HSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 153/533 (28%), Positives = 249/533 (46%), Gaps = 28/533 (5%)

Query: 47  GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMP-VRDSGSWNAMISGY 104
           G+ +H  +L+    + D  VA SLL +Y R G    AR +FD M  +RD  SW AM S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-- 162
            ++G    +L ++ EM   G+  +  T+ +    C   + +   +   +  + H +    
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHE-LYCLVGGVVLGLVHKMGLWG 185

Query: 163 -NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++ V + LI+M A+ G +  A +VFD ++E+ VV W  +I+ Y Q      A   F   
Sbjct: 186 TDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDF 245

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            + G +PD  T+ S+ S   +L   R    +H   +R G    D  +   +VDMYAK  I
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMG-LASDACVSCGLVDMYAKSNI 304

Query: 282 ---INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF--QMMEECNEINPNQGTY 336
              ++ A  VFE +P  DVISW  LI+GY Q+G+    +     +M+ E   I PN  TY
Sbjct: 305 GQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNE--SIKPNHITY 362

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            SIL + + +     G ++HA VIK+       V   LV MY + G +++A  +F Q+  
Sbjct: 363 SSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYE 422

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            S +P         I    D  L+     +D G+     TF SL++A +  G++++GQ+ 
Sbjct: 423 RSMIPC--------ITEGRDFPLDHRIVRMDVGISSS--TFASLISAAASVGMLTKGQQ- 471

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H M  + G          +V ++ R G+L  A      +  R   S W +++     HG
Sbjct: 472 LHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVIS-WTSMISGLAKHG 530

Query: 517 NMELG-AVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDRGL 567
             E   ++  D +      N   Y+ + +  ++VG   EG +  RS+ RD GL
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 156/310 (50%), Gaps = 44/310 (14%)

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G   H   +   +++RD V  NS++  Y +     +A   F  M+  G++ D+++  +
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR--GLR-DIVSWTA 121

Query: 236 LTSIVAQLNDCRNSRSVHGFIM------------------------------------RR 259
           + S +A+    R S  + G ++                                    + 
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G +  DV +G+A++DM A+ G + SA  VF+GL  K V+ W  LI+ Y Q   A EA+E+
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F    E +   P++ T  S++ A + +G++R G+++H+  ++  L  D  V+  LVDMY 
Sbjct: 242 FLDFLE-DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYA 300

Query: 380 KCG---RIDDAMSLFYQVPRSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPDHI 435
           K      +D A  +F ++P++  + W A+IS +   G Q +K +  F +ML+E ++P+HI
Sbjct: 301 KSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 436 TFVSLLTACS 445
           T+ S+L +C+
Sbjct: 361 TYSSILKSCA 370



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 24/372 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS YV+ G     V   +   L   ++P+  T+  +LK+C ++ D   G+++H  V+K 
Sbjct: 329 LISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKS 388

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                  V  +L+ MY   G    AR++F+ +  R      +MI   C      E  D  
Sbjct: 389 NQASAHTVGNALVSMYAESGCMEEARRVFNQLYER------SMIP--C----ITEGRDFP 436

Query: 118 DEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            + R+    V +   T AS++   A    +  G  +H   +K G   + FVSN+L++MY+
Sbjct: 437 LDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYS 496

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G +  A R F+++ +R+V+SW S+I+   +      A   F  M   G++P+ +T ++
Sbjct: 497 RCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIA 556

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S  + +   R  +     + R    +  +     +VD+ A+ GI+  A      +P+K
Sbjct: 557 VLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLK 616

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMM-EECNEINP-NQGTYVSILPAYSHVGALRQG 352
            D + W TL+     +    + IEV ++  +   E+ P +   YV +   Y+  G   + 
Sbjct: 617 ADALVWKTLLGACRSH----DNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEV 672

Query: 353 IKIHARVIKNCL 364
            +I + +  N L
Sbjct: 673 ARIRSAMRDNNL 684



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 347 GALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNA 404
           G LR G  +H R+++ + L  D  VA  L+ +Y +CG +  A ++F  +      V W A
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           + SC   +G    +L    +ML+ G+ P+  T  +   AC    L          +  + 
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 465 GI-KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G+    +     ++D+  R G L  A      + +     +W  L+
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGL-IEKTVVVWTLLI 226


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/714 (37%), Positives = 391/714 (54%), Gaps = 16/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +IS YV  G  + A+  F++  L  G+  D   F  VL AC +   L  G+ IH   ++ 
Sbjct: 99  LISAYVSRGHSAAAIALFHRI-LQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEA 157

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G      VA++L+ MY R G    A  LF  +    D   WNAMI+   Q+G+  EAL+I
Sbjct: 158 GLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEI 217

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMY 174
              M   G+  D +T  S+   C+ S ++ +  +   H  + + GL  ++ V+  L+N Y
Sbjct: 218 FYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAY 277

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           A+ G +  A   F  M ER+ VSW S+IAA+ Q    +    F   + + G+ P   T  
Sbjct: 278 ARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLAVETFHAMLLE-GVVP---TRS 333

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           +L + +    D   +R V       G    DV I   +V  YA+      A  VF     
Sbjct: 334 TLFAALEGCEDLHTARLVEAIAQEIG-VATDVAIVTDLVMAYARCDGQEDAIRVFSAREE 392

Query: 295 K--DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
              D      +I  YAQ        +++    E   I+P++  Y++ L A + + AL +G
Sbjct: 393 GEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIE-RGISPDRILYITALDACASLAALSEG 451

Query: 353 IKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
            +IHA V  +  L  DV +   +V MYG+CG + DA   F  +P    + WNA++S    
Sbjct: 452 RQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQ 511

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG+ +   + FR ML EG   + + F++LL+AC+H+GLV  G  +F  M  + G+ P  +
Sbjct: 512 HGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATE 571

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGCMVDL GR G L  AH  +Q MPV PDA+ W AL+GACRI+G+ E G  A++R+ E+
Sbjct: 572 HYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLEL 631

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
            + +   YV + NIY+  G+WE    VR +  D GL+K PG SSIE+ +KV  F   +R+
Sbjct: 632 RANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRS 691

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ E IY EL  +   ++  GY      VL DVEE++KE +L  HSE+LAIAFG++S+P
Sbjct: 692 HPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTP 751

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             S +++ KNLRVC DCHN +KFIS++  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 752 QGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/495 (27%), Positives = 236/495 (47%), Gaps = 25/495 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG 95
           +++ C ++  GK +H  +        D ++A+SL++MY R G    A  +F  +  +   
Sbjct: 35  LVRECNSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
            W  +IS Y   G++  A+ +   +  EG+++D I   S+L  C+  + + +G LIH   
Sbjct: 95  LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQSNDPIT 213
           V+ GL     V++ L++MY + G +R A  +F   +ER  DVV WN++I A  Q+  P  
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALFGH-LERHLDVVLWNAMITANSQNGSPRE 213

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF--IMRRGWFMEDVIIGNA 271
           A   F  M Q GI PDL+T VS+    +     R S+ V GF   +       DV++  A
Sbjct: 214 ALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQ-VKGFHTCLDETGLGSDVVVATA 272

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +V+ YA+ G I+ A   F  +P ++ +SW ++I  +AQ G    A+E F  M     + P
Sbjct: 273 LVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLL-AVETFHAM-LLEGVVP 330

Query: 332 NQGTYVSILPAYS--HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            + T  + L      H   L + I     V       DV + T LV  Y +C   +DA+ 
Sbjct: 331 TRSTLFAALEGCEDLHTARLVEAIAQEIGVAT-----DVAIVTDLVMAYARCDGQEDAIR 385

Query: 390 LFYQVPRSSSVPWNA--IISCHGIHGQGDKALNFFR---QMLDEGVRPDHITFVSLLTAC 444
           +F          W+A  + +   ++ Q     + F+     ++ G+ PD I +++ L AC
Sbjct: 386 VFSAREEG---EWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDAC 442

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +    +SEG++    +  +  +   +     +V ++G+ G L  A +    MP R + S 
Sbjct: 443 ASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEIS- 501

Query: 505 WGALLGACRIHGNME 519
           W A+L A   HG +E
Sbjct: 502 WNAMLSASAQHGRVE 516


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 372/614 (60%), Gaps = 2/614 (0%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLI 151
           D  +WN+M+  +  S     AL    EM     ++ D  T  S+L  CA       G ++
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
           H  +VK+ L  +L++   L+NMYA  G ++ A  +F++M  R+ V W S+I+ Y +++ P
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   +  M++ G  PD +T+ +L S  A+L D      +H  I R        ++G+A
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI-REMDMKICAVLGSA 220

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           +V+MYAK G + +A  VF+ L  KDV +W+ LI GY +N  ++EA+++F+ +   + + P
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N+ T ++++ A + +G L  G  +H  + +      V +   L+DM+ KCG ID A  +F
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +     + WN++++   +HG G +AL  FR M    ++PD ITF+ +LTACSH+GLV 
Sbjct: 341 DSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQ 400

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG++ F+ ++  +G++   +HYGCMVDL  RAG L  A  FI+ MP++PD +IWG++LGA
Sbjct: 401 EGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGA 460

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CR++ N+ELG  A+  L +++  N G Y+L+SNIYA    W  V +VR L  ++G++KTP
Sbjct: 461 CRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTP 520

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G SS+ ++N    F  G+ +HP+  +I   LR +  K+K  GYV D S VL ++++++KE
Sbjct: 521 GCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKE 580

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
             ++ HSE+LA+ +G++ S     I I KNLRVC DCH   K +S+I +R+I +RD NRF
Sbjct: 581 ESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRF 640

Query: 692 HHFKDGICSCGDYW 705
           HHFKDG CSC DYW
Sbjct: 641 HHFKDGSCSCRDYW 654



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 242/439 (55%), Gaps = 21/439 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  +V       A+  + +    S   PD +TFP +LK C  L++   GK +H  V+K 
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKY 108

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D+++  +LL+MY   G    AR LF+ M  R+   W +MISGY ++    EAL + 
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  +G S D +T+A+++  CA   ++  G+ +H +I +  ++    + + L+NMYAK 
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G ++ A +VFD++ ++DV +W+++I  Y ++N    A   F  +   + ++P+ +T++++
Sbjct: 229 GDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288

Query: 237 TSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            S  AQL D    R VH +I R  +G     V + N+++DM++K G I++A  +F+ +  
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKG---HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD+ISWN+++ G+A +GL  EA+  F++M +  ++ P++ T++ +L A SH G +++G K
Sbjct: 346 KDLISWNSMVNGFALHGLGREALAQFRLM-QTTDLQPDEITFIGVLTACSHAGLVQEGKK 404

Query: 355 IHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCH 409
           +   +      + V + +    C+VD+  + G + +A      +P +     W +++   
Sbjct: 405 LFYEIEA---LYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC 461

Query: 410 GIHGQ---GDKALNFFRQM 425
            ++     G++A  F  ++
Sbjct: 462 RVYNNLELGEEAARFLLKL 480



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 187/354 (52%), Gaps = 11/354 (3%)

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIV 240
           +A  VF    E DV++WNS++ A+  SN P  A   +T M +++   PD  T  SL    
Sbjct: 30  YAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A L + +  + +HG +++      D+ I   +++MYA  G + SA  +FE +  ++ + W
Sbjct: 90  ALLLEFKVGKVLHGQVVKY-MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
            ++I+GY +N   +EA+ +++ MEE +  +P++ T  +++ A + +  L  G+K+H+ + 
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEE-DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           +  +     + + LV+MY KCG +  A  +F ++       W+A+I  +  + +  +AL 
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQ 267

Query: 421 FFRQML-DEGVRPDHITFVSLLTACSHSGLVSEGQRYFH--MMQEEFGIKPHLKHYGCMV 477
            FR++     +RP+ +T +++++AC+  G +  G R+ H  + + + G    L +   ++
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETG-RWVHDYITRTQKGHSVSLNN--SLI 324

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           D+F + G +  A     +M  + D   W +++    +HG +   A+A  RL + 
Sbjct: 325 DMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALHG-LGREALAQFRLMQT 376



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 115/228 (50%), Gaps = 2/228 (0%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A +VF      DV++WN+++  +  + +   A++ +  M E +   P++ T+ S+L 
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
             + +   + G  +H +V+K  L  D+++ T L++MY  CG +  A  LF ++   + V 
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W ++IS +  +   ++AL  +++M ++G  PD +T  +L++AC+    +  G +  H   
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMK-LHSHI 206

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            E  +K        +V+++ + G L  A      +  + D   W AL+
Sbjct: 207 REMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDK-DVYAWSALI 253


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 353/556 (63%), Gaps = 3/556 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  ++K     + F+ + L++MY K G    A R+FD+M  +D+VSWNS+++       
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 211 PITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                  F  M+ ++G QP+ +TL+S+ S  A +      +S+HG +++ G   +  ++ 
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV- 259

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N++++MY KLG +++A  +FE +PV+ ++SWN+++  +  NG A + +++F +M+    I
Sbjct: 260 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-I 318

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           NP+Q T V++L A +  G  RQ   IHA + +     D+ +AT L+++Y K GR++ +  
Sbjct: 319 NPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASED 378

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++     + W A+++ + +H  G +A+  F  M+ EGV  DH+TF  LL+ACSHSGL
Sbjct: 379 IFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 438

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG++YF +M E + ++P L HY CMVDL GR+G L  A+  I++MP+ P + +WGALL
Sbjct: 439 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 498

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACR++GN+ELG   +++L  +D  +   Y+++SNIY+  G W    +VR+L ++R L +
Sbjct: 499 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 558

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IE  NK+  F  G++ HP+ ++I+ +L  L  K++  G  P   FVL D++E+ 
Sbjct: 559 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEV 618

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K  ++  HSE+LAIAFG++ +    P+ I KNLR+CGDCH+  KF S + +R II+RDS 
Sbjct: 619 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 678

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF DG+CSC DYW
Sbjct: 679 RFHHFADGLCSCRDYW 694



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 225/433 (51%), Gaps = 12/433 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
            + +C ++     IH  V+K     D F+   L+ MY + G    A++LFD+MP +D  S
Sbjct: 128 AISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS 187

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN+++SG    G     L+    MR E G   + +T+ S++  CA    +  G  +H  +
Sbjct: 188 WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVV 247

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           VK G+     V N+LINMY K G +  A ++F++M  R +VSWNS++  +  +       
Sbjct: 248 VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 307

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M++AGI PD  T+V+L          R + S+H +I R G F  D+II  A++++
Sbjct: 308 DLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCG-FNADIIIATALLNL 366

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAKLG +N++  +FE +  +D I+W  ++ GYA +    EAI++F +M +   +  +  T
Sbjct: 367 YAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVT 425

Query: 336 YVSILPAYSHVGALRQGIK---IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           +  +L A SH G + +G K   I + V +     D +  +C+VD+ G+ GR++DA  L  
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVDLLGRSGRLEDAYELIK 483

Query: 393 QVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLV 450
            +P   SS  W A++    ++G  +       Q+L   + P DH  ++ L    S +GL 
Sbjct: 484 SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS--LDPSDHRNYIMLSNIYSAAGLW 541

Query: 451 SEGQRYFHMMQEE 463
            +  +   +M+E 
Sbjct: 542 RDASKVRALMKER 554



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 168/352 (47%), Gaps = 24/352 (6%)

Query: 186 VFDQMMERDVVSWNSIIA--------------AYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           VF+Q + R  V WNSI++              A+  ++        F T +   I  +  
Sbjct: 54  VFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIPKQFKRFNTNKGCCIFREAS 113

Query: 232 TLVSLTSIVAQL----NDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
             + + SIV  L    + C +     ++H  +++   +  D  IG+ +V MY KLG    
Sbjct: 114 QFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNY-SDGFIGDRLVSMYFKLGYDED 172

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +F+ +P KD++SWN+L++G +  G     +  F  M   +   PN+ T +S++ A +
Sbjct: 173 AQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 232

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +GAL +G  +H  V+K  +     V   L++MYGK G +D A  LF ++P  S V WN+
Sbjct: 233 DMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 292

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           ++  H  +G  +K ++ F  M   G+ PD  T V+LL AC+ +GL  + +   H      
Sbjct: 293 MVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES-IHAYIHRC 351

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G    +     +++L+ + G L  + +  + +  R D   W A+L    +H 
Sbjct: 352 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DRIAWTAMLAGYAVHA 402



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKL 57
           M+ ++   G   + +D F      +G+ PD  T   +L+AC +   G++   IH  + + 
Sbjct: 293 MVVIHNHNGYAEKGMDLF-NLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 351

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ +A +LL++Y + G  N +  +F+++  RD  +W AM++GY       EA+ + 
Sbjct: 352 GFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLF 411

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLIN 172
           D M  EGV +D +T   +L  C+ S  +  G     ++  +Y V+  L+      + +++
Sbjct: 412 DLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH----YSCMVD 467

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +  + G +  A  +   M ME     W +++ A
Sbjct: 468 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 500


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/651 (39%), Positives = 373/651 (57%), Gaps = 48/651 (7%)

Query: 98  NAMISGYCQSGNAVEALDIL-DEMRL-EGVSM-----DPIT--VASILPVCARSDNILSG 148
           +A I+  C S    EA+DIL  + RL E V +      P      ++L  C +   +  G
Sbjct: 79  DAYINRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEG 138

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE-- 206
             +H +I   G    L++SN L++MYAK G +  A +VFD+M+ RD+ SWN +I+ Y   
Sbjct: 139 KQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKG 197

Query: 207 -----------------------------QSNDPITAHGFFTTMQQAGI-QPDLLTLVSL 236
                                        Q N P  A   +  MQ+    + +  T+ S 
Sbjct: 198 GNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSA 257

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A +      + +HG IMR G    D ++  +++DMY K G I  A  +F+ +  +D
Sbjct: 258 LAASAAIPSLHMGKKIHGHIMRMG-LDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERD 316

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW T+I  Y +NG   E   +F+ +   N I PN  T+  +L A + + A   G +IH
Sbjct: 317 VVSWTTMIHTYLKNGRREEGFALFRHLMNSN-IMPNDFTFAGVLNACADLAAEDLGKQIH 375

Query: 357 ARVIKNCLCFDVF--VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           A +++  + FD F   A+ LV MY KCG I++A S+F  +P+     W +++  +  HGQ
Sbjct: 376 AYMVR--VGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQ 433

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            DKAL+FF  +L  G +PD I F+ +L+AC+H+GLV +G  YFH ++E+ G+   + HY 
Sbjct: 434 HDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYA 493

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           C++DL  RAG    A + I  MP++PD  IW ALLG CRIHGN+EL   A+  LFE++ E
Sbjct: 494 CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPE 553

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           N   YV ++NIYA+ G       +R     RG+ K PG S IE+  +V +F  G+ +HPK
Sbjct: 554 NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPK 613

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++I + L  L+ +MK +GYVPD +FVL DVE ++KE  L+ HSE+LA+AFGIIS+P  +
Sbjct: 614 SKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGT 673

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI++FKNLR C DCHN  KFIS IT R+IIVRDSNRFH F+ G CSC DYW
Sbjct: 674 PIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 240/494 (48%), Gaps = 58/494 (11%)

Query: 3   SVYVRCG--RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++ + CG  RL EAV   Y+       +P    +  +LK C   R L +GK++H  + K 
Sbjct: 94  AIDILCGQSRLREAVQLLYRIE-----KPYASIYLTLLKFCLKQRALKEGKQVHAHI-KT 147

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                ++++  LL MY + G    A K+FD+M  RD  SWN MISGY + GN  +A ++ 
Sbjct: 148 SGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLF 207

Query: 118 DEMRLEGVSMDPITVASILPVCARSD---------------------------------- 143
           D+M     + D  +  +I+  C + +                                  
Sbjct: 208 DKMP----NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAA 263

Query: 144 --NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             ++  G  IH +I++ GL+ +  V  +L++MY K G +  A  +FD+M ERDVVSW ++
Sbjct: 264 IPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTM 323

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y ++         F  +  + I P+  T   + +  A L      + +H +++R G 
Sbjct: 324 IHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVG- 382

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F       +A+V MY+K G I +A +VFE LP  D+ SW +L+ GYAQ+G   +A+  F+
Sbjct: 383 FDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFE 442

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGK 380
           ++ +     P+   ++ +L A +H G + +G++  H+   K+ L   +    C++D+  +
Sbjct: 443 LLLKSG-TKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLAR 501

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFV 438
            G+  +A S+  ++P +     W A++    IHG  + A    + + +  + P++  T+V
Sbjct: 502 AGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFE--IEPENPATYV 559

Query: 439 SLLTACSHSGLVSE 452
           +L    + +G+ +E
Sbjct: 560 TLANIYASAGMRAE 573


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/632 (37%), Positives = 364/632 (57%), Gaps = 24/632 (3%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMR--LEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           SW   I      G  + A+ +  +MR  +   S  P ++ + L  CA          +H 
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHAL--------------------RVFDQMMER 193
             ++ G   + F +N L+N+  K     H                      +VFD+M+ER
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D VSWN++I    +      A      M + G  PD  TL ++  I A+  D +    VH
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVH 193

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G+ ++ G F  DV +G++++DMYA    ++ +  VF+     D + WN+++ GYAQNG  
Sbjct: 194 GYAIKNG-FDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 252

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA+ +F+ M +   + P   T+ S++PA+ ++  LR G ++HA +I+     ++F+++ 
Sbjct: 253 EEALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSS 311

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+DMY KCG +D A  +F  +     V W A+I  + +HG   +A   F +M    V+P+
Sbjct: 312 LIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPN 371

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
           HITF+++LTACSH+GLV  G +YF+ M  ++G  P L+H   + D  GRAG L  A+NFI
Sbjct: 372 HITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFI 431

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
             M ++P +S+W  LL ACR+H N  L    + ++FE++ +++G +V++SN+Y+  G+W 
Sbjct: 432 SEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWN 491

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
              ++R   R +G+KK P  S IEV NK+ +F   +++HP Y++I D L   + +M   G
Sbjct: 492 EAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQG 551

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           YVP+   VLQD+EE++K  +L  HSE+LAI FGIIS+PP + I++ KNLRVC DCH  TK
Sbjct: 552 YVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATK 611

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FIS+I  REI+VRD NRFH FKDG CSCGD+W
Sbjct: 612 FISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 223/431 (51%), Gaps = 30/431 (6%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDF-YTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVF 64
           G+   A+  F Q   +   R     + P  LK+C  L        +H   ++ G   D F
Sbjct: 26  GQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRF 85

Query: 65  VAASLLHMYCRF----------------GLANVA----RKLFDDMPVRDSGSWNAMISGY 104
            A +LL++  +                 GL + A    RK+FD+M  RD+ SWN +I G 
Sbjct: 86  TANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGC 145

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            +     EAL ++ EM  +G   D  T++++LP+ A   +I  G+++H Y +K+G + ++
Sbjct: 146 AEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDV 205

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV ++LI+MYA    M ++++VFD   + D V WNS++A Y Q+     A G F  M QA
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 265

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G++P  +T  SL      L+  R  + +H +++ R  F +++ I ++++DMY K G ++ 
Sbjct: 266 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLI-RARFNDNIFISSSLIDMYCKCGNVDI 324

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VF G+   D++SW  +I GYA +G  +EA  +F+ ME  N + PN  T++++L A S
Sbjct: 325 ARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN-VKPNHITFLAVLTACS 383

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATC--LVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           H G +  G K +   + N   F   +  C  L D  G+ G +D+A +   ++  + +S  
Sbjct: 384 HAGLVDNGWK-YFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSV 442

Query: 402 WNAIISCHGIH 412
           W+ ++    +H
Sbjct: 443 WSTLLRACRVH 453



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 165/344 (47%), Gaps = 20/344 (5%)

Query: 26  GLRPDFYTFP---PVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD +T     P+   C ++  G  +H   +K GF+ DVFV +SL+ MY      + +
Sbjct: 165 GFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS 224

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            K+FD     D+  WN+M++GY Q+G+  EAL I   M   GV   P+T +S++P     
Sbjct: 225 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL 284

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H Y+++     N+F+S++LI+MY K G +  A RVF+ +   D+VSW ++I
Sbjct: 285 SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMI 344

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             Y        A   F  M+   ++P+ +T +++ +  +      N       +  +  F
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGF 404

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG---YAQNGLASE-AI 317
           +  +    A+ D   + G ++ A      + +K   S W+TL+     +    LA E A 
Sbjct: 405 VPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAK 464

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVG------ALRQGIKI 355
           ++F++  +      + G++V +   YS  G       LR+ ++I
Sbjct: 465 KIFELEPK------SMGSHVILSNMYSASGRWNEAAQLRKSMRI 502


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/736 (36%), Positives = 404/736 (54%), Gaps = 78/736 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  Y R G  ++ V  F + T +  LRP  + +  ++K       G   H  VLKLG  
Sbjct: 71  MLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAGK--SGNMFHAYVLKLGHI 127

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            D F+  ++L MY + G  ++AR LF+ M  R    WN+MISG  +SGN  EA       
Sbjct: 128 DDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA------- 180

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                    + + +++P  AR                     N+    +++  YAK G +
Sbjct: 181 ---------VVLFNMMP--AR---------------------NIITWTSMVTGYAKMGDL 208

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A R FD+M ER VVSWN++ +AY Q   P  A   F  M + GI PD  T V   S  
Sbjct: 209 ESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSC 268

Query: 241 AQLNDCRNSRSVHGFI--------------------------MRRGWFME-----DVIIG 269
           + + D   + S+   I                          + R  F E     + +  
Sbjct: 269 SSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTW 328

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++  Y ++G ++ A  +F+ +P +DV+SWN++I GYAQNG ++ +IE+F+ M  C +I
Sbjct: 329 NIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDI 388

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  S+L A  H+GAL+    +   V +  +   +     L+ MY KCG + DA  
Sbjct: 389 QPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHR 448

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     V +N +IS    +G G +A+     M +EG+ PDH+T++ +LTACSH+GL
Sbjct: 449 IFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGL 508

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           ++EG+  F  +Q      P + HY CMVDL GRAG L  A   IQ+MP++P A ++G+LL
Sbjct: 509 LNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLL 563

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            A RIH  + LG +A+ +LFE++ +N+G YVL+SNIYA+ G+WE V  VR + +  GLKK
Sbjct: 564 NASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKK 623

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
           + G S +E   +V  F  G+R+H + + IY  L  L  KMK +G+V DKS  L+DVEE+E
Sbjct: 624 SVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEE 683

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE +L +HSE+LAI F ++ S   + I++ KNLR+C DCH   K IS++  REI+VRD+N
Sbjct: 684 KEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNN 743

Query: 690 RFHHFKDGICSCGDYW 705
           RFH F +G+CSC DYW
Sbjct: 744 RFHCFSEGMCSCHDYW 759



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 42/225 (18%)

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKI------------------------------HARV 359
           +P+   Y  +L  YS +GA  Q + +                              HA V
Sbjct: 62  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYV 121

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K     D F+   ++DMY K G++D A +LF Q+   +   WN++IS     G   +A+
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M    +    IT+ S++T  +  G +   +RYF  M E   +      +  M   
Sbjct: 182 VLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVVS-----WNAMQSA 232

Query: 480 FGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELG 521
           + +      A N    M    + PD + W   + +C   G+  L 
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLA 277


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 376/620 (60%), Gaps = 14/620 (2%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNILSGLL 150
           DS + N +I   C+ GN  +AL +L +        +P   T   ++  C R +++  G+ 
Sbjct: 46  DSNNNNPLIQSLCKQGNLNQALQVLSQ------EPNPTQHTYELLILSCTRQNSLPQGID 99

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H +++  G + + F++  LINMY++   + +A +VFD+  +R +  WN++  A   +  
Sbjct: 100 LHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGY 159

Query: 211 PITAHGFFTTMQQAGIQPDLLT----LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
                  +  M + G+  D  T    L +  +  A ++   N R +HG I+R G F   V
Sbjct: 160 GREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHG-FEGHV 218

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEE 325
            I   ++DMYA+ G + +A  VF+ +PVK+V+SW+ +I  Y++NG   EA+E+F +MM E
Sbjct: 219 HIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLE 278

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             ++ PN  T VS+L A + + AL QG  +H  +++  L   + V + LV +Y +CG ++
Sbjct: 279 NQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLE 338

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
               +F ++ +   V WN++IS +GIHG G KA+  F++M+D+G+ P  I+FVS+L ACS
Sbjct: 339 LGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACS 398

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GLV EG+  F  M     I P ++HY CMVDL GRA  L  A   I +M + P   +W
Sbjct: 399 HAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVW 458

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
           G+LLG+CRIH N+EL   A+ RLFE++  N G YVL+++IYA    W  V  V+ L   R
Sbjct: 459 GSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEAR 518

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GL+K PG S IE+  K+  F + +  +P+ E+++  L  L+ +MK  GYVPD   VL D+
Sbjct: 519 GLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDL 578

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           + +EKE I+  HSE+LA+AFG+I+S     I+I KNLR+C DCH+ TKFIS+   REI+V
Sbjct: 579 DPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILV 638

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD NRFH F+DG+CSCGDYW
Sbjct: 639 RDVNRFHLFQDGVCSCGDYW 658



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 218/402 (54%), Gaps = 19/402 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I    + G L++A+       L+    P  +T+  ++ +C    +L  G  +H  ++  
Sbjct: 53  LIQSLCKQGNLNQALQ-----VLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHD 107

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D F+A  L++MY      + ARK+FD    R    WNA+      +G   E LD+ 
Sbjct: 108 GSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLY 167

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLL----IHLYIVKHGLEFNLFVSNNLINM 173
             M   GV  D  T   +L  C  S+  +S LL    IH +I++HG E ++ +   L++M
Sbjct: 168 RRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDM 227

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLL 231
           YA+FG + +A RVFDQM  ++VVSW+++IA Y ++  P+ A   F  M  +   + P+ +
Sbjct: 228 YARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSV 287

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFE 290
           T+VS+    A L      + +HG+I+RRG  ++ ++ + +A+V +YA+ G +     VFE
Sbjct: 288 TMVSVLQACAALAALEQGKLMHGYILRRG--LDSILPVVSALVTVYARCGNLELGHRVFE 345

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  +DV+SWN+LI+ Y  +G   +AI++F+ M +   ++P+  ++VS+L A SH G + 
Sbjct: 346 RMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMID-QGLSPSPISFVSVLGACSHAGLVE 404

Query: 351 QGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLF 391
           +G  +   +++    F  V    C+VD+ G+  R+D+A  + 
Sbjct: 405 EGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKII 446



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 150/279 (53%), Gaps = 9/279 (3%)

Query: 26  GLRPDFYTFPPVLKACRN-------LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           G+  D +T+  VLKAC         L++G++IH  +L+ GFE  V +  +LL MY RFG 
Sbjct: 174 GVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGC 233

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASIL 136
              A ++FD MPV++  SW+AMI+ Y ++G  +EAL++  +M LE   + P  +T+ S+L
Sbjct: 234 VLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVL 293

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             CA    +  G L+H YI++ GL+  L V + L+ +YA+ G +    RVF++M +RDVV
Sbjct: 294 QACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVV 353

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SWNS+I++Y        A   F  M   G+ P  ++ VS+    +        + +   +
Sbjct: 354 SWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESM 413

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +R       V     +VD+  +   ++ A  + + + ++
Sbjct: 414 VRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIE 452


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/736 (36%), Positives = 404/736 (54%), Gaps = 78/736 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  Y R G  ++ V  F + T +  LRP  + +  ++K       G   H  VLKLG  
Sbjct: 71  MLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAGK--SGNLFHAYVLKLGHI 127

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            D F+  ++L MY + G  ++AR LF+ M  R    WN+MISG  +SGN  EA       
Sbjct: 128 DDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA------- 180

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                    + + +++P  AR                     N+    +++  YAK G +
Sbjct: 181 ---------VVLFNMMP--AR---------------------NIITWTSMVTGYAKMGDL 208

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A R FD+M ER VVSWN++ +AY Q   P  A   F  M + GI PD  T V   S  
Sbjct: 209 ESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSC 268

Query: 241 AQLNDCRNSRSVHGFI--------------------------MRRGWFME-----DVIIG 269
           + + D   + S+   I                          + R  F E     + +  
Sbjct: 269 SSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTW 328

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++  Y ++G ++ A  +F+ +P +DV+SWN++I GYAQNG ++ +IE+F+ M  C +I
Sbjct: 329 NIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDI 388

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P++ T  S+L A  H+GAL+    +   V +  +   +     L+ MY KCG + DA  
Sbjct: 389 QPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHR 448

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     V +N +IS    +G G +A+     M +EG+ PDH+T++ +LTACSH+GL
Sbjct: 449 IFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGL 508

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           ++EG+  F  +Q      P + HY CMVDL GRAG L  A   IQ+MP++P A ++G+LL
Sbjct: 509 LNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLL 563

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            A RIH  + LG +A+ +LFE++ +N+G YVL+SNIYA+ G+WE V  VR + +  GLKK
Sbjct: 564 NASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKK 623

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
           + G S +E   +V  F  G+R+H + + IY  L  L  KMK +G+V DKS  L+DVEE+E
Sbjct: 624 SVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEE 683

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE +L +HSE+LAI F ++ S   + I++ KNLR+C DCH   K IS++  REI+VRD+N
Sbjct: 684 KEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNN 743

Query: 690 RFHHFKDGICSCGDYW 705
           RFH F +G+CSC DYW
Sbjct: 744 RFHCFSEGMCSCHDYW 759



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 42/225 (18%)

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKI------------------------------HARV 359
           +P+   Y  +L  YS +GA  Q + +                              HA V
Sbjct: 62  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYV 121

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K     D F+   ++DMY K G++D A +LF Q+   +   WN++IS     G   +A+
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M    +    IT+ S++T  +  G +   +RYF  M E   +      +  M   
Sbjct: 182 VLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVVS-----WNAMQSA 232

Query: 480 FGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELG 521
           + +      A N    M    + PD + W   + +C   G+  L 
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLA 277


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/744 (34%), Positives = 412/744 (55%), Gaps = 41/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +     EAV+ F+   L SG+ P+ YTF  +L AC   +D   G ++H  V+KL
Sbjct: 167 LISGFSKSDWEDEAVELFFAM-LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKL 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VF+  +L+ +YC+ G  ++  +LF++MP RD  SWN +IS   +     EA D  
Sbjct: 226 GLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYF 285

Query: 118 DEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M+L +G+ +D  +++++L  CA S   + G  +H   +K GLE +L VS++LI  Y K
Sbjct: 286 RGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTK 345

Query: 177 -------------------------------FGMMRHALRVFDQMMERDVVSWNSIIAAY 205
                                          FGM+  A+ VF++M +R+ +S+N+++A  
Sbjct: 346 CGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGL 405

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            +++D   A   F  M + G++    TL S+ +    L   + S+ + GF+M+ G  + +
Sbjct: 406 SRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFG-ILSN 464

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMM 323
             I  A+VDMY + G +  A  +F    +++       ++I GYA+NG  +EAI +F   
Sbjct: 465 SCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSG 524

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    I  ++    SIL     +G    G ++H   +K+ L  +  V    V MY KC  
Sbjct: 525 QSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLITETGVGNATVSMYSKCWN 584

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +DDA+ +F  +     V WN +++ H +H QGDKAL  +++M   G++PD ITF  +++A
Sbjct: 585 MDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISA 644

Query: 444 CSHS--GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             H+   LV   +  F  M+ E  IKP L+HY   + + GR G L  A   I+NMP+ PD
Sbjct: 645 YKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPD 704

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +W ALL +CRI+ N  L  +A+  +  V+ ++   Y+L SN+Y+  G+W   ++VR  
Sbjct: 705 VYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYYSEKVRED 764

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            R++G +K P  S I   NK+  FY  +R+HP+ + IY  L  L  +   +GYVPD SFV
Sbjct: 765 MREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGYVPDTSFV 824

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           LQ+VEE +K+  L  HS +LA  FGI+ + P  PIQI KN+R+CGDCHN+ K++S +T R
Sbjct: 825 LQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHNFLKYVSIVTRR 884

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           +I++RD++ FH F DG CSC DYW
Sbjct: 885 KILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 242/513 (47%), Gaps = 45/513 (8%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            + +H   LKL  E D+F+  +L+  Y + GL   A K+F  +   +  S+ A+ISG+ +
Sbjct: 116 ARAVHAQFLKL--EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSK 173

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           S    EA+++   M   G+  +  T  +IL  C R+ +   G  +H  +VK GL   +F+
Sbjct: 174 SDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFI 233

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AG 225
            N L+ +Y K G +   LR+F++M ERD+ SWN++I++  +      A  +F  MQ   G
Sbjct: 234 CNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKG 293

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++ D  +L +L +  A        + +H   ++ G     + + ++++  Y K G  N  
Sbjct: 294 LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVG-LESHLSVSSSLIGFYTKCGSANDV 352

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN------------- 332
             +FE +P++DVI+W  +IT Y + G+   A+EVF  M + N I+ N             
Sbjct: 353 TDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGS 412

Query: 333 -----------QG------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
                      +G      T  SI+ A   + + +   +I   V+K  +  +  + T LV
Sbjct: 413 RALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALV 472

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC----HGIHGQGDKALNFFRQMLDEG-V 430
           DMY +CGR++DA  +FYQ  RS    + A+++     +  +G+ ++A++ F     EG +
Sbjct: 473 DMYTRCGRMEDAEKIFYQ--RSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAI 530

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             D +   S+L+ C   G    G++  H    + G+          V ++ +  ++  A 
Sbjct: 531 VMDEVMSTSILSLCGSIGFHEMGKQ-MHCHALKSGLITETGVGNATVSMYSKCWNMDDAV 589

Query: 491 NFIQNMPVRPDASIWGALLGACRIH--GNMELG 521
                M ++ D   W  L+    +H  G+  LG
Sbjct: 590 RVFNTMNMQ-DIVSWNGLVAGHVLHWQGDKALG 621


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/754 (33%), Positives = 411/754 (54%), Gaps = 72/754 (9%)

Query: 9    GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
            G  S    CF+    +  L           K C       ++H  +   G       +  
Sbjct: 334  GEASAEYACFFTLNSSRSLTSH--------KRCATSTTLTQLHAHLFITGLHRHPPASTK 385

Query: 69   LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC----------------------- 105
            L+  Y + G+   ++++FD  P  DS  W  +I  Y                        
Sbjct: 386  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 445

Query: 106  ----------------------QSGNAVEALDILDEMRLEGVSMDPITVASILPVCA--- 140
                                  ++G A E LD+  +M  E V  D +T+ S+   C+   
Sbjct: 446  SNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELG 505

Query: 141  -----RSDNILSGLLIHLYIVKHGLEFNL-FVSNNLINMYAKFGMMRHALRVFDQMMERD 194
                 R   +  G  +H ++++  ++  L F+   L+ +YA  G +R   +VF+ + E+ 
Sbjct: 506  SLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKT 565

Query: 195  VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            ++SWN++I+ + ++  P  A   F  MQ  G+ PD  +L S  S    ++  +    +HG
Sbjct: 566  ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHG 625

Query: 255  FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            +I++ G F +   + NA++DMYAK G ++SA  +FE +  K +++WN++I G++QNG + 
Sbjct: 626  YIIKTGNFND--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSV 683

Query: 315  EAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EAI +F QM   C  +  ++ T++S++ A SH+G L +G  +H ++I   L  D ++ T 
Sbjct: 684  EAITLFDQMYMNC--VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTA 741

Query: 374  LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
            L DMY KCG +  A  +F ++   S V W+ +I+ +G+HGQ +  ++ F QML  G++P+
Sbjct: 742  LTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPN 801

Query: 434  HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
             ITF+ +L+ACSH+G V EG+ YF+ M E FG++P   H+ CMVDL  RAG L  A+  I
Sbjct: 802  DITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQII 860

Query: 494  QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
             ++P   ++SIWGALL  CRIH  +++       L +VD+ + GYY L+SNIYA  G W+
Sbjct: 861  TSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWD 920

Query: 554  GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
               +VRS+ + +GL+K PG+S+IE++ K+  F  G+ +H + + IY  L N  + + +  
Sbjct: 921  KFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQV 980

Query: 614  Y--VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            Y   PD S V     +  KE+ + SHSE+LAIAFGII++ P + ++I KNLRVC DCH++
Sbjct: 981  YDSEPDNSIV--GTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSF 1038

Query: 672  TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             K  S+IT REII+RD NRFH F++G CSC DYW
Sbjct: 1039 AKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/586 (39%), Positives = 347/586 (59%), Gaps = 2/586 (0%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           +R+E   +D  T+  +L +CA+  ++L G   H   +  GL  +    N LIN+Y K G 
Sbjct: 47  VRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQ 106

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
              A RVFD M  R ++SWN++IA Y  + + + A   F+ M + G Q    TL S    
Sbjct: 107 NDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCA 166

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A        + +H   ++         +G A +D+YAK  +I  AC VFE +P K  ++
Sbjct: 167 CAAKYAIIECKQLHTIAIKLA-LDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVT 225

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W++L  G+ QNGL  E + +FQ  +    +   + T  SIL   + +  + +G ++HA +
Sbjct: 226 WSSLFAGFVQNGLHEEVLCLFQSTQR-EGMQLTEFTVSSILSTCASLALIIEGTQVHAVI 284

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           +K+    ++FVAT LVD+Y KCG+I+ +  +F  +   + V WNA+I+    H    +A+
Sbjct: 285 VKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAM 344

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F +M   G+ P+ +T++S+L+ACSH+GLV EG+ YF+++  +   +P++ HY CMVD+
Sbjct: 345 ILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDV 404

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GR+G    A   +  MP  P AS+WG+LLG+ RIH N+ L  +A+++LF ++ EN G +
Sbjct: 405 LGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNH 464

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SN+YA  G WE V   R   RD G KK  G S IE   K+ +F  G R HP    +Y
Sbjct: 465 VLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVY 524

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
           ++L  +  +M+ + +  +    L DV  D+KE +L  HSE+LA AFG+IS PP  PI I+
Sbjct: 525 NKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIY 584

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLR+CGDCH++ K +S ITER++IVRD NRFHHFKDG CSCGD+W
Sbjct: 585 KNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 203/393 (51%), Gaps = 17/393 (4%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D +T   +L+ C   R+L+ GK  H   +  G   D      L+++Y + G  + AR++F
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           D M VR   SWN MI+GY  +   VEAL +   M  EG  M   T++S L  CA    I+
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
               +H   +K  L+ + FV    +++YAK  M++ A  VF+ M E+  V+W+S+ A + 
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q+         F + Q+ G+Q    T+ S+ S  A L        VH  I++ G F  ++
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHG-FHRNL 293

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +  ++VD+YAK G I  +  VF  +  K+V+ WN +I  ++++  + EA+ +F+ M++ 
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD------VFVATCLVDMYGK 380
             I PN+ TY+SIL A SH G + +G     R   N L  D      V   +C+VD+ G+
Sbjct: 354 G-IFPNEVTYLSILSACSHTGLVEEG-----RHYFNLLLSDRTAEPNVLHYSCMVDVLGR 407

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            G+ D+A  L  ++P   ++  W +++    IH
Sbjct: 408 SGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIH 440



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 155/308 (50%), Gaps = 5/308 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y       EA+  F +     G +   +T    L AC     +++ K++H   +KL
Sbjct: 128 MIAGYTHNREDVEALKLFSRMH-REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKL 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +   FV  + L +Y +  +   A  +F++MP + S +W+++ +G+ Q+G   E L + 
Sbjct: 187 ALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLF 246

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              + EG+ +   TV+SIL  CA    I+ G  +H  IVKHG   NLFV+ +L+++YAK 
Sbjct: 247 QSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKC 306

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  VF  M E++VV WN++IA++ +      A   F  MQQ GI P+ +T +S+ 
Sbjct: 307 GQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSIL 366

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  +        R     ++       +V+  + +VD+  + G  + A  + + +P +  
Sbjct: 367 SACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPT 426

Query: 298 IS-WNTLI 304
            S W +L+
Sbjct: 427 ASMWGSLL 434


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/747 (34%), Positives = 398/747 (53%), Gaps = 82/747 (10%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLG 58
           I + ++  +L + V+ F +    S L+ +  T   VL+AC     L   K+IH  V + G
Sbjct: 206 IILNLQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG 264

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ------------ 106
            + DV +   L+ MY + G   +AR++FD M  R++ SWN+MIS Y              
Sbjct: 265 LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 324

Query: 107 -----------------------SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
                                   G   E L+IL  M+ EG   +  ++ S+L   +   
Sbjct: 325 ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELG 384

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G   H Y++++G + +++V  +LI+MY K   +  A  VFD M  R++ +WNS+++
Sbjct: 385 FLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVS 444

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y        A      M++ GI+PDL+T                            W  
Sbjct: 445 GYSFKGMFEDALRLLNQMEKEGIKPDLVT----------------------------W-- 474

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFE-----GLPVKDVISWNTLITGYAQNGLASEAIE 318
                 N ++  YA  G    A AV       GL   +V+SW  LI+G +Q G   ++++
Sbjct: 475 ------NGMISGYAMWGCGKEALAVLHQTKSLGL-TPNVVSWTALISGSSQAGNNRDSLK 527

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            F  M++   + PN  +   +L A + +  L++G +IH   I+N    DVFVAT L+DMY
Sbjct: 528 FFAQMQQ-EGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMY 586

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            K   + +A  +F ++   +   WN +I    I G G +A++ F +M   GV PD ITF 
Sbjct: 587 SKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFT 646

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           +LL+AC +SGL+ EG +YF  M  ++ I P L+HY CMVDL GRAG+L  A + I  MP+
Sbjct: 647 ALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPL 706

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +PDA+IWGALLG+CRIH N++    A+  LF+++  N   Y+LM N+Y+   +WE +D +
Sbjct: 707 KPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHL 766

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L    G++    WS I++N +V +F +  + HP   KIY EL  L ++MK LGYVPD 
Sbjct: 767 RELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDV 826

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
           + V Q+++E EK+ IL SH+E+LAI +G+I      PI++ KN R+C DCH+  K+IS +
Sbjct: 827 NCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLV 886

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
             RE+ +RD  RFHHF++G CSC D+W
Sbjct: 887 KARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 124/510 (24%), Positives = 231/510 (45%), Gaps = 43/510 (8%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAA-SLLHMYCRFG-LANVARKLFDDMPVRDSGSWNAM 100
           +L   K +H  ++KL  +W+   AA +L+  Y  FG   + A   +  +P R+   WN+ 
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSF 103

Query: 101 ISGYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +  +  S  ++   L++  E+  +GV  D    +  L  C R  +I  G+ IH  ++K G
Sbjct: 104 VEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG 163

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
            + ++++   L+N Y +   +  A +VF +M   + + WN  I    QS         F 
Sbjct: 164 FDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFR 223

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            MQ + ++ +  T+V +     ++     ++ +HG++ R G    DV + N ++ MY+K 
Sbjct: 224 KMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKN 282

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN------------ 327
           G +  A  VF+ +  ++  SWN++I+ YA  G  ++A  +F  +E  +            
Sbjct: 283 GKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 342

Query: 328 ----------------------EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
                                    PN  +  S+L A S +G L  G + H  V++N   
Sbjct: 343 SGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFD 402

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DV+V T L+DMY K   +  A ++F  +   +   WN+++S +   G  + AL    QM
Sbjct: 403 CDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 462

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
             EG++PD +T+  +++  +  G   E     H  +   G+ P++  +  ++    +AG+
Sbjct: 463 EKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTK-SLGLTPNVVSWTALISGSSQAGN 521

Query: 486 LGMAHNFIQNMP---VRPDASIWGALLGAC 512
              +  F   M    V P+++    LL AC
Sbjct: 522 NRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 210/456 (46%), Gaps = 82/456 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYT--------------------------- 33
           MIS Y   G L++A   FY+   +S ++PD  T                           
Sbjct: 306 MISSYAALGFLNDAWSLFYELE-SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 364

Query: 34  -FPP-------VLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
            F P       VL+A      L  GK+ H  VL+ GF+ DV+V  SL+ MY +      A
Sbjct: 365 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 424

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           + +FD+M  R+  +WN+++SGY   G   +AL +L++M  EG+  D +T           
Sbjct: 425 QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW---------- 474

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM----MERDVVSW 198
                                    N +I+ YA +G  + AL V  Q     +  +VVSW
Sbjct: 475 -------------------------NGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSW 509

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
            ++I+   Q+ +   +  FF  MQQ G+ P+  ++  L    A L+  +  + +H   +R
Sbjct: 510 TALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIR 569

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G F+EDV +  A++DMY+K   + +A  VF  +  K + SWN +I G+A  GL  EAI 
Sbjct: 570 NG-FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAIS 628

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV-ATCLVDM 377
           VF  M++   + P+  T+ ++L A  + G + +G K    +I +           C+VD+
Sbjct: 629 VFNEMQKVG-VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDL 687

Query: 378 YGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            G+ G +D+A  L + +P +  +  W A++    IH
Sbjct: 688 LGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 723


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/659 (37%), Positives = 377/659 (57%), Gaps = 45/659 (6%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQ 106
           ++H  VL+ G   D +V+ +LL  Y     +N   A K+F  +P  +   WN +I G  +
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +    +A+     M ++    +  T  ++   C+ +  +  G  IH ++VKHG+  ++ +
Sbjct: 111 NNKLFKAIYFYGRMVIDARP-NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            +  I+MYA FG +  A ++F    E DVV WN++I  Y +      A G F  M    I
Sbjct: 170 KSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI 228

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
                                             W        N +++  AK G +  A 
Sbjct: 229 G--------------------------------SW--------NVMINGLAKGGNLGDAR 248

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F+ +  +D ISW++++ GY   G   EA+E+FQ M+   E  P +    S+L A S++
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNI 307

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GA+ QG  +HA + +N +  D  + T L+DMY KCGR+D    +F ++       WNA+I
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMI 367

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
               IHG+ + AL  F ++ +  ++P+ IT V +LTAC+H+G V +G R F  M+E +G+
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV 427

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P L+HYGCMVDL GR+G    A + I +MP++P+A++WGALLGACRIHGN +L      
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGK 487

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L E++ +N G YVL+SNIYA VG+++ V ++R L +DRG+K  PG S +++N  V  F 
Sbjct: 488 ILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFK 547

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+ ++IY +L+ +  +++  G+ PD S VL D++E+EKE  +  HSE+LAIAFG
Sbjct: 548 MGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFG 607

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I++ P   I I KNLRVC DCH+ TK ISQI +REIIVRD  R+HHFK+G CSC D+W
Sbjct: 608 LINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 170/395 (43%), Gaps = 71/395 (17%)

Query: 28  RPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           RP+ +T+P + KAC   + + +G++IH  V+K G   DV + ++ +HMY  FG    ARK
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARK 188

Query: 85  ------------------------------LFDDMPVRDSGSWNAMISGYCQSGNA---- 110
                                         LF  MPV++ GSWN MI+G  + GN     
Sbjct: 189 MFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDAR 248

Query: 111 ---------------------------VEALDILDEMRLEGVSMDPITVASILPVCARSD 143
                                       EAL+I  +M+ E        ++S+L  C+   
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIG 308

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            I  G  +H Y+ ++ ++ +  +   L++MYAK G +     VF++M ER++ +WN++I 
Sbjct: 309 AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIG 368

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                     A   F+ +Q+  ++P+ +TLV + +  A        + +  F   R ++ 
Sbjct: 369 GLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV--DKGLRIFQTMREFYG 426

Query: 264 EDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
            D  + +   +VD+  + G+ + A  +   +P+K +   W  L+     +G    A  V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +++ E      N G YV +   Y+ VG      KI
Sbjct: 487 KILLELEP--QNSGRYVLLSNIYAKVGRFDDVSKI 519


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/686 (36%), Positives = 386/686 (56%), Gaps = 10/686 (1%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
            F LT+ L+       P L  C        IH    KLG + + FV +SL+  Y   G  
Sbjct: 150 HFVLTTILKVLVAMDAPGLTCC--------IHACACKLGHDRNAFVGSSLIDAYSLCGAV 201

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + AR +FD +  +D+ +W AM+S Y ++    +AL+   +MR+ G   +P  + S+L   
Sbjct: 202 SHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAA 261

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
               + + G  IH   VK   +    V   L++MYAK G +  A  VF+ +   DV+ W+
Sbjct: 262 VCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWS 321

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            +I+ Y QS     A   F  M ++ + P+  +L  +    A +      + +H  +++ 
Sbjct: 322 FLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKL 381

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G+  E + +GNA++D+YAK   + ++  +F  L   + +SWNT+I GY Q+G A +A+ V
Sbjct: 382 GYESE-LFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSV 440

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           FQ M   + ++  Q T+ S+L A ++  +++  ++IH+ + K+    D  V   L+D Y 
Sbjct: 441 FQEMRAAHVLS-TQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYA 499

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCG I DA+ +F  + +   V WNAIIS + +HG+   AL  F +M     +P+ +TFV+
Sbjct: 500 KCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVA 559

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           LL+ C  +GLV++G   F+ M  +  IKP + HY C+V L GRAG L  A  FI ++P  
Sbjct: 560 LLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P   +W ALL +C +H N+ LG  +++++ E++ ++   YVL+SN+YA  G  + V  +R
Sbjct: 620 PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLR 679

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              R+ G+KK  G S +E+  +V  F  G+  HP    I   L  L  K    GYVPD +
Sbjct: 680 KSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDIN 739

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            VL DV+E+EK  +L  HSERLA+A+G+  +PP  PI+I KNLR C DCH   K IS+I 
Sbjct: 740 VVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIV 799

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           +REI+VRD NRFHHF +GICSCGDYW
Sbjct: 800 QREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 152/548 (27%), Positives = 272/548 (49%), Gaps = 11/548 (2%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLG--FEWDVFVAASLLHMYCRFGLANVARK 84
           D Y    +L+ C    D   G+ +H  V++ G   + D F A  LL++Y + G    AR+
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           LFD MP R+  S+  ++ GY   G   EA  +   ++ EG  ++   + +IL V    D 
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
                 IH    K G + N FV ++LI+ Y+  G + HA  VFD ++ +D V+W ++++ 
Sbjct: 166 PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y +++ P  A   F+ M+ AG +P+   L S+      L+     + +HG  ++     E
Sbjct: 226 YSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTE 285

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
              +G A++DMYAK G I  A  VFE +P  DVI W+ LI+ YAQ+    +A E+F  M 
Sbjct: 286 P-HVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMM 344

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             + + PN+ +   +L A ++V  L  G +IH  VIK     ++FV   L+D+Y KC  +
Sbjct: 345 R-SSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNM 403

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           ++++ +F  +  ++ V WN II  +   G  + AL+ F++M    V    +TF S+L AC
Sbjct: 404 ENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRAC 463

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +++  +    +  H + E+            ++D + + G +  A    +++ ++ D   
Sbjct: 464 ANTASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVS 521

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           W A++    +HG         +R+ + D++  +V +  L+S   +     +G+    S+ 
Sbjct: 522 WNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMT 581

Query: 563 RDRGLKKT 570
            D  +K +
Sbjct: 582 MDHRIKPS 589


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 349/557 (62%), Gaps = 4/557 (0%)

Query: 151 IHLYIVKHGLEF-NLFVSNNLINMYAKF-GMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           IH + ++HG+   N  +   LI     F   M +A ++F Q+   ++ +WN++I  Y +S
Sbjct: 59  IHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAES 118

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            +P+ A   +  M  + I+PD  T   L   +A+L D R    VH   +R G F   V +
Sbjct: 119 ENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNG-FESLVFV 177

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N +V MYA  G   SA  +FE +  +++++WN++I GYA NG  +EA+ +F+ M     
Sbjct: 178 QNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMG-LRG 236

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P+  T VS+L A + +GAL  G + H  ++K  L  ++     L+D+Y KCG I  A 
Sbjct: 237 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 296

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F ++   S V W ++I    ++G G +AL  F+++  +G+ P  ITFV +L ACSH G
Sbjct: 297 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 356

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +V EG  YF  M+EE+GI P ++HYGCMVDL GRAG +  AH FIQNMP++P+A +W  L
Sbjct: 357 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 416

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LGAC IHG++ LG VA  +L +++ ++ G YVL+SN+YA+  +W  V +VR      G+K
Sbjct: 417 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 476

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           KTPG S +E+ N++  F  G+R+HP+ E+IY +L  +T  +K  GYVP  S VL D+EE+
Sbjct: 477 KTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEE 536

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE  L+ HSE++AIAF +I++    PI++ KNLRVC DCH   K IS++ +REI+VRD 
Sbjct: 537 EKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDR 596

Query: 689 NRFHHFKDGICSCGDYW 705
           +RFHHFKDG CSC DYW
Sbjct: 597 SRFHHFKDGHCSCKDYW 613



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 179/335 (53%), Gaps = 4/335 (1%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A ++F  +   +  +WN MI GY +S N + AL++  +M +  +  D  T   +L   A+
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             ++  G  +H   +++G E  +FV N L++MYA  G    A ++F+ M ER++V+WNS+
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y  +  P  A   F  M   G++PD  T+VSL S  A+L      R  H ++++ G 
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG- 271

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              ++  GNA++D+YAK G I  A  VF+ +  K V+SW +LI G A NG   EA+E+F+
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGK 380
            +E    + P++ T+V +L A SH G + +G     R+ +   +   +    C+VD+ G+
Sbjct: 332 ELER-KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGR 390

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            G +  A      +P + ++V W  ++    IHG 
Sbjct: 391 AGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 166/321 (51%), Gaps = 17/321 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y        A++ + Q  + S + PD +T+P +LKA   L+D   G+K+H   ++ 
Sbjct: 111 MIRGYAESENPMPALELYRQMHV-SCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRN 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE  VFV  +L+HMY   G A  A KLF+ M  R+  +WN++I+GY  +G   EAL + 
Sbjct: 170 GFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLF 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L GV  D  T+ S+L  CA    +  G   H+Y+VK GL+ NL   N L+++YAK 
Sbjct: 230 REMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKC 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R A +VFD+M E+ VVSW S+I     +     A   F  +++ G+ P  +T V + 
Sbjct: 290 GSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGV- 348

Query: 238 SIVAQLNDCRNSRSV-HGFIMRRGWFMEDVIIGN-----AVVDMYAKLGIINSACAVFEG 291
                L  C +   V  GF   +    E  I+        +VD+  + G++  A    + 
Sbjct: 349 -----LYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN 403

Query: 292 LPVK-DVISWNTLITGYAQNG 311
           +P++ + + W TL+     +G
Sbjct: 404 MPMQPNAVVWRTLLGACTIHG 424


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 400/713 (56%), Gaps = 10/713 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI+   + G+  E +  F +  L  G++ +  T+  +++ CRNL    +G+ I   +L+ 
Sbjct: 231 MIAGCSQNGQYEEGLLVFRKMDL-EGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILES 289

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F     +A SL+ +Y + G+ + A+ L + M  RD  +WNAM++   Q+G+  EA+ +L
Sbjct: 290 PFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLL 349

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL-EFNLFVSNNLINMYAK 176
             M +EG   + +T  S+L  CA  + +  G  IH  ++  GL +  + V N++I MY K
Sbjct: 350 RRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGK 409

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G    A+ VF+ M  +D VSWN++I A   ++    A   F  M+  G++ +  TL+SL
Sbjct: 410 CGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSL 469

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                 L D + +R +H      G+      +GN+VV+MYA+ G +  A   F+ L  K 
Sbjct: 470 LEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKG 529

Query: 297 VISWNTLITGYAQ--NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +++W+ ++  YAQ  +G    A + FQ ME    I P + T+VS L A + +  L  G  
Sbjct: 530 LVAWSIILAAYAQSKDGPGRRAFKFFQEME-AEGIKPGEVTFVSALDACAAMATLEHGRS 588

Query: 355 IHARVIKNCLCFDVFV-ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           +H R   +       V    +++MYGKCG   DA  +F Q+P    + WN++I  +  +G
Sbjct: 589 MHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNG 648

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL+  ++ML +G  PD  T VS+L   SH+GL+  G  +F    ++ G++P     
Sbjct: 649 HALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQL 708

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
            C+VDL  R G L  A   I   P  + D   W  LL AC+ +G+ + G   ++R+FE++
Sbjct: 709 KCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELE 768

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            ++ G +V+++N+YA+VG+W     +R +     +KK PG S IE++  V  F +G   H
Sbjct: 769 PQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKH 828

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           PK  +I ++L  LT +M+  GYVPD + V+ DVEE +KE IL+ HSERLAI FG++S+ P
Sbjct: 829 PKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRP 888

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              I++ KNLRVC DCH  TK IS +  REI+VRDS+RFHHFK G CSCGD+W
Sbjct: 889 GETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 165/581 (28%), Positives = 283/581 (48%), Gaps = 13/581 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M++VY + G  S+A++C  +     G++P+  TF  ++  C   R L  G+KIH  ++  
Sbjct: 130 MLAVYAQNGCWSQALECLSRMD-AEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINE 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D  +  +L+HMY   G  +  + +F  M       W  MI+G  Q+G   E L + 
Sbjct: 189 GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVF 248

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M LEGV  + +T  S++ VC   D +  G +I   I++     +  ++ +LI++Y + 
Sbjct: 249 RKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQC 308

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A  + + M +RDVV+WN+++ A  Q+ D   A      M   G   + +T +S+ 
Sbjct: 309 GILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVL 368

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      R +H  ++  G    +V +GN+V+ MY K G   +A +VFE +P KD 
Sbjct: 369 EACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDD 428

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I     N    +A+E+F  M E   +  N+ T +S+L A   +  L+   +IHA
Sbjct: 429 VSWNAVINASVGNSKFQDALELFHGM-ELEGLRSNEFTLLSLLEACGGLEDLKLARQIHA 487

Query: 358 RVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH--GQ 414
           R        +   V   +V+MY +CG + DA   F  +     V W+ I++ +     G 
Sbjct: 488 RAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGP 547

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A  FF++M  EG++P  +TFVS L AC+    +  G+           ++  L    
Sbjct: 548 GRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGN 607

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVAS--DRLFEVD 532
            +++++G+ G    A      MP +   S W +L+ A   H    L A++S  + L +  
Sbjct: 608 TIINMYGKCGSPSDAKLVFDQMPEKCLIS-WNSLIVA-YAHNGHALEALSSLQEMLLQGF 665

Query: 533 SENVGYYVLMSNIYANVGKWE-GVDEVRSLARDRGLKKTPG 572
             + G  V +    ++ G  E GV+  RS  +D GL+ + G
Sbjct: 666 DPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSG 706



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 237/448 (52%), Gaps = 7/448 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           M++ Y + G   EA++ F +     G RPD   F   L AC     L  G++IH SV+  
Sbjct: 29  MMAAYSQNGHYREALELFTRMQW-EGTRPDKVVFVIALDACAASGELDHGRQIHSSVVGS 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   ++ ++ SL++MY +      A K+FD M +RD  SW AM++ Y Q+G   +AL+ L
Sbjct: 88  GLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECL 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EGV  + +T  +I+ VCA+   +  G  IH  I+  GLE +  + N L++MY   
Sbjct: 148 SRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSC 207

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G       VF +M +  V+ W ++IA   Q+         F  M   G++ + +T +S+ 
Sbjct: 208 GSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMV 267

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            +   L+  +    +   I+    F    ++  +++ +Y + GI++ A  + E +  +DV
Sbjct: 268 EVCRNLDAVKEGEMIDARILESP-FCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDV 326

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN ++T  AQNG   EAI + + M +      N+ TY+S+L A +++ AL QG +IHA
Sbjct: 327 VAWNAMVTACAQNGDNWEAIHLLRRM-DMEGFGANKVTYLSVLEACANLEALSQGREIHA 385

Query: 358 RVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           RV+    L  +V V   ++ MYGKCG+ + AMS+F  +PR   V WNA+I+    + +  
Sbjct: 386 RVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQ 445

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTAC 444
            AL  F  M  EG+R +  T +SLL AC
Sbjct: 446 DALELFHGMELEGLRSNEFTLLSLLEAC 473



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 235/447 (52%), Gaps = 17/447 (3%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +      A  +FD +  ++  SW  M++ Y Q+G+  EAL++   M+ EG   D + 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
               L  CA S  +  G  IH  +V  GL  N+ +SN+L+NMY K   +  A +VFD M+
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            RDVVSW +++A Y Q+     A    + M   G++P+ +T V++  + A+L      R 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H  I+  G    D I+GNA+V MY   G  +   +VF  +    V+ W T+I G +QNG
Sbjct: 181 IHHRIINEG-LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNG 239

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              E + VF+ M +   +  N+ TY+S++    ++ A+++G  I AR++++  C    +A
Sbjct: 240 QYEEGLLVFRKM-DLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLA 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T L+ +YG+CG +D A  L   + +   V WNA+++    +G   +A++  R+M  EG  
Sbjct: 299 TSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFG 358

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFH-------MMQEEFGIKPHLKHYGCMVDLFGRAG 484
            + +T++S+L AC++   +S+G R  H       ++Q E  +   +      + ++G+ G
Sbjct: 359 ANKVTYLSVLEACANLEALSQG-REIHARVLLCGLLQREVAVGNSV------ITMYGKCG 411

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGA 511
               A +  + MP + D S W A++ A
Sbjct: 412 QTEAAMSVFEAMPRKDDVS-WNAVINA 437


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/650 (40%), Positives = 371/650 (57%), Gaps = 47/650 (7%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A  +F+ +P  +   WN M  G+  S + V AL +   M   G+  +  T   +L  CA+
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---- 197
           S     G  IH +++K G + +L+V  +LI+MYA+ G +  A +VFD+   RDVVS    
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 198 ---------------------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
                                      WN++I+ Y ++ +   A   F  M +  ++PD 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T+ ++ S  AQ       R VH +I   G F  ++ I NA++D+Y+K G + +AC + E
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWINDHG-FGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           GL  KDVISWNTLI GY    L  EA+ +FQ M    E  PN  T +SILPA +H+GA+ 
Sbjct: 267 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAID 325

Query: 351 QGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSV-----P 401
            G  IH  + K      V  A    T L+DMY KCG ID A     QV  SS+       
Sbjct: 326 IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAP----QVSDSSAFNRSLST 381

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WNA+I    +HG+ + A + F +M   G+ PD ITFV LL+ACSHSG++  G+  F  M+
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +++ I P L+HYGCM+DL G +G    A   I  MP+ PD  IW +LL AC+IHGN+ELG
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELG 501

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL-KKTPGWSSIEVNN 580
              + +L +++ EN G YVL+SNIYA  GKW  V ++R+L  D+G+ KK PG SSIE+++
Sbjct: 502 ESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
            V  F  G++ HP+  +IY  L  +   ++  G+VPD S VLQ++EE+ KE  L  HSE+
Sbjct: 562 VVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEK 621

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           LAIAFG+IS+ P + + I KNLRVC +CH  TK IS+I +REII RD  R
Sbjct: 622 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 235/452 (51%), Gaps = 47/452 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+F+TFP +LK+C   +   +G++IH  VLKLGF+ D++V  SL+ MY 
Sbjct: 62  LYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYA 121

Query: 75  R-------------------------------FGLANVARKLFDDMPVRDSGSWNAMISG 103
           +                                G    A+K+FD++P++D  SWNAMISG
Sbjct: 122 QNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISG 181

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++GN  +AL++  EM    V  D  T+A+++  CA+S +I  G  +H +I  HG   N
Sbjct: 182 YAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSN 241

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  + + +  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 242 LKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 301

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA------VVDMYA 277
           +G  P+ +T++S+    A L      R +H +I ++   ++ V++ NA      ++DMYA
Sbjct: 302 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKK---LKGVVVTNASSLRTSLIDMYA 358

Query: 278 KLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           K G I++A  V +       +S WN +I G+A +G A+ A ++F  M + N I P+  T+
Sbjct: 359 KCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRK-NGIEPDDITF 417

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           V +L A SH G L  G  I   + ++  +   +    C++D+ G  G   +A  +   +P
Sbjct: 418 VGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 477

Query: 396 -RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
                V W +++    IHG  +   +F ++++
Sbjct: 478 MEPDGVIWCSLLKACKIHGNLELGESFAKKLI 509



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 179/379 (47%), Gaps = 46/379 (12%)

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F  + +A+ VF+ + E + + WN +   +  S+DP++A   +  M   G+ P+  T   L
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFME------------------------------DV 266
               A+    +  + +HG +++ G+ ++                              DV
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           +   A++  YA  G I SA  +F+ +P+KDV+SWN +I+GYA+ G   +A+E+F+ M + 
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N + P++ T  +++ A +  G++  G ++H+ +  +    ++ +   L+D+Y KCG ++ 
Sbjct: 202 N-VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVET 260

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  L   +     + WN +I  +       +AL  F++ML  G  P+ +T +S+L AC+H
Sbjct: 261 ACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHY---------GCMVDLFGRAGHLGMAHNFIQNMP 497
            G +  G R+ H+      I   LK             ++D++ + G +  A     +  
Sbjct: 321 LGAIDIG-RWIHVY-----IDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSA 374

Query: 498 VRPDASIWGALLGACRIHG 516
                S W A++    +HG
Sbjct: 375 FNRSLSTWNAMIFGFAMHG 393



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 172/367 (46%), Gaps = 18/367 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y   G   +A++ F +  + + ++PD  T   V+ AC    ++  G+++H  +   
Sbjct: 178 MISGYAETGNYKKALELFKEM-MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDH 236

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ +Y + G    A +L + +  +D  SWN +I GY       EAL + 
Sbjct: 237 GFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLF 296

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN------NLI 171
            EM   G + + +T+ SILP CA    I  G  IH+YI K      + V+N      +LI
Sbjct: 297 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKK--LKGVVVTNASSLRTSLI 354

Query: 172 NMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           +MYAK G +  A +V D     R + +WN++I  +        A   F+ M++ GI+PD 
Sbjct: 355 DMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDD 414

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T V L S  +        R++   + +       +     ++D+    G+   A  +  
Sbjct: 415 ITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMIN 474

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGA 348
            +P++ D + W +L+     +G   E  E F   ++  +I P N G+YV +   Y+  G 
Sbjct: 475 TMPMEPDGVIWCSLLKACKIHG-NLELGESFA--KKLIKIEPENPGSYVLLSNIYATAGK 531

Query: 349 LRQGIKI 355
             +  KI
Sbjct: 532 WNEVXKI 538


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 396/705 (56%), Gaps = 32/705 (4%)

Query: 32  YTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA-NVARKLFDDMP 90
           +T    L +  +L   K++H  +L+   +    +   L+   C    + + A  +F+ +P
Sbjct: 24  HTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIP 83

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
             ++   N  +    +S    + L + + MR +G+++D  +   +L   +R  +++ GL 
Sbjct: 84  KPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLE 143

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH    K G + + FV   L+ MYA  G +  A  +FD+M  RDVV+W+ +I  Y QS  
Sbjct: 144 IHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGL 203

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME------ 264
              A   F  M+   ++PD + L ++ S   +  +    + +H FIM     ++      
Sbjct: 204 FNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSA 263

Query: 265 ------------------------DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
                                   +++   A+V  Y+KLG I +A +VF  +  KD++ W
Sbjct: 264 LVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCW 323

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           + +I+GYA++    EA+ +F  M+    I P+Q T +S++ A +H+GAL Q   IH  V 
Sbjct: 324 SAMISGYAESDSPQEALNLFNEMQSLG-IKPDQVTMLSVITACAHLGALDQAKWIHLFVD 382

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN     + +   L++MY KCG ++ A  +F ++PR + + W  +IS   +HG    AL 
Sbjct: 383 KNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALR 442

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
           FF QM DE + P+ ITFV +L ACSH+GLV EG++ F+ M  E  I P   HYGCMVDLF
Sbjct: 443 FFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRA  L  A   ++ MP+ P+  IWG+L+ ACR+HG +ELG  A+ RL E+D ++ G +V
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            +SNIYA   +WE V +VR L + +G+ K  G S  E+NN++  F   +R+H   ++IY+
Sbjct: 563 FLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYE 622

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           +L  + +K+K +GY P+   +L D+EE+EK+ ++  HSE+LA+ +G++     S I+I K
Sbjct: 623 KLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIK 682

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVC DCH + K  S++ EREI+VRD  RFHH+KDG+CSC DYW
Sbjct: 683 NLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 246/452 (54%), Gaps = 40/452 (8%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+   T GL  D ++FPP+LKA    ++LV+G +IH    KLGF+ D FV   L+ MY  
Sbjct: 110 YERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAA 169

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G    AR +FD M  RD  +W+ MI GYCQSG   +AL + +EM+   V  D + ++++
Sbjct: 170 CGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTV 229

Query: 136 LPVCARSDNILSGLLIHLYIVKHG----------------------LEFNLF-------- 165
           L  C R+ N+  G +IH +I+++                       L  NLF        
Sbjct: 230 LSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNL 289

Query: 166 -VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
             S  ++  Y+K G + +A  VF+QM+++D+V W+++I+ Y +S+ P  A   F  MQ  
Sbjct: 290 VASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSL 349

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           GI+PD +T++S+ +  A L     ++ +H F+ + G F   + I NA+++MYAK G +  
Sbjct: 350 GIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG-FGGALPINNALIEMYAKCGSLER 408

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +F+ +P K+VISW  +I+ +A +G A  A+  F  ME+ N I PN  T+V +L A S
Sbjct: 409 ARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN-IEPNGITFVGVLYACS 467

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSV-PW 402
           H G + +G KI   +I         V   C+VD++G+   + +A+ L   +P + +V  W
Sbjct: 468 HAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIW 527

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
            ++++   +HG+ +      +++L+  + PDH
Sbjct: 528 GSLMAACRVHGEIELGEFAAKRLLE--LDPDH 557


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/710 (37%), Positives = 393/710 (55%), Gaps = 8/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  YV+     EA++  Y+  +   +  D YT   VL AC  L+D   G+ +     +L
Sbjct: 39  LVECYVQNAMYQEALE-VYKEMVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEEL 97

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDM-PVRDSGSWNAMISGYCQSGNAVEALDI 116
           GFE DV VA SL+H++ + G    A  +F  M  +RD  S  AMI  Y + G    ALD 
Sbjct: 98  GFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDT 157

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +MR +G+  D  T A+IL  C+  D +L G  IH +I++     N+ V N LI MYAK
Sbjct: 158 YWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAK 217

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G ++ +  +F  M  +DVVSWN++IAAY        A   F  M   G  PD+ T  S+
Sbjct: 218 CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSI 277

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A      + R +H  I  RG F  D  + N ++ M+ + G + SA   F  +  K+
Sbjct: 278 LGACASPKRLEDGRMLHVRITARG-FDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKE 336

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           + +WNT++  YAQ     +A+ +++ M       P++ T+ S++ + + +GALR+G  IH
Sbjct: 337 LGAWNTMLAAYAQFDKGKDALFLYKNML-LEGFTPDRFTFSSVVDSCASLGALREGKFIH 395

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
                     DV + T LV+MY KCG + DA   F  +     V W+A+I+    HG  +
Sbjct: 396 ECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAE 455

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL     M  +G+  + +T  S+L ACSH G + EG  YF  + ++FGI+   ++    
Sbjct: 456 EALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGF 515

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG L  A + +  MP +        LLG C++HG++  G   + R+  ++ EN 
Sbjct: 516 IDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENP 575

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YVL++N+YA  G+W+ V ++R   R +G+K+  G SSIE  +K+  F  G+ ++P+  
Sbjct: 576 GSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNL 635

Query: 597 KIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +I  EL  L ++MK   GYVPD   V  DV +D+KE +L  HSE++A+ FG+I+SPP S 
Sbjct: 636 EIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGST 695

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++I KNLRVC DCH   K  S+IT R IIVRD  RFHHF+ GICSCGDYW
Sbjct: 696 LRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/512 (26%), Positives = 252/512 (49%), Gaps = 9/512 (1%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D F+A  ++ MY +      AR++FD +  R++ SW+ ++  Y Q+    EAL++  EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            + +S+D  T++S+L  C +  ++  G ++     + G E ++ V+ +LI+++AK G + 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 182 HALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            A  VF  M   RD++S  ++I AY +      A   +  M+  G++PD  T  ++    
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           +  +   + + +H  I+    F  ++ + NA++ MYAK G +  + ++F  + VKDV+SW
Sbjct: 181 SSPDFLLDGKHIHKHILESKHF-GNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSW 239

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +I  Y   G   +A  +F  M       P+  T+ SIL A +    L  G  +H R+ 
Sbjct: 240 NAMIAAYTLYGHDKDAFSLFHRMCTLGH-TPDIYTFSSILGACASPKRLEDGRMLHVRIT 298

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
                 D  +   L+ M+ +CG ++ A   FY + +     WN +++ +    +G  AL 
Sbjct: 299 ARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALF 358

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            ++ ML EG  PD  TF S++ +C+  G + EG ++ H      G +  +     +V+++
Sbjct: 359 LYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHECSTSCGFEKDVILGTALVNMY 417

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            + G L  A      +  + D   W A++ A   HG+ E  A+    L  +         
Sbjct: 418 AKCGSLADAKKSFDGISNK-DVVSWSAMIAASAQHGHAE-EALELSHLMNLQGIAQNEVT 475

Query: 541 LMSNIYA--NVGK-WEGVDEVRSLARDRGLKK 569
             S ++A  + G+ +EG+D    L++D G+++
Sbjct: 476 ASSVLHACSHGGRLYEGIDYFMGLSQDFGIER 507


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/680 (37%), Positives = 378/680 (55%), Gaps = 42/680 (6%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG---NAVEALD 115
           F W+     +LL  Y + GL +     F+ +P RD  +WN +I GY  SG    AV+A +
Sbjct: 73  FSWN-----NLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 127

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +  MR    ++  +T+ ++L + + + ++  G  IH  ++K G E  L V + L+ MYA
Sbjct: 128 TM--MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 176 KFGMMRHALRVFDQM------------------------------MERDVVSWNSIIAAY 205
             G +  A +VF  +                              ME+D VSW ++I   
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGL 245

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+     A   F  M+  G++ D     S+      L      + +H  I+R   F + 
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN-FQDH 304

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           + +G+A++DMY K   ++ A  VF+ +  K+V+SW  ++ GY Q G A EA+++F  M+ 
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR 364

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              I+P+  T    + A ++V +L +G + H + I + L   V V+  LV +YGKCG ID
Sbjct: 365 SG-IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDID 423

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           D+  LF ++    +V W A++S +   G+  + +  F +M+  G++PD +T   +++ACS
Sbjct: 424 DSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS 483

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            +GLV +GQRYF +M  E+GI P + HY CM+DLF R+G L  A  FI  MP  PDA  W
Sbjct: 484 RAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGW 543

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             LL ACR  GN+E+G  A++ L E+D  +   Y L+S+IYA+ GKW+ V ++R   R++
Sbjct: 544 TTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREK 603

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
            +KK PG S I+   K+  F   + + P  ++IY +L  L  K+   GY PD SFV  DV
Sbjct: 604 NVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDV 663

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           EE  K  +L  HSERLAIAFG+I  P   PI++ KNLRVC DCHN TK IS +T REI+V
Sbjct: 664 EEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILV 723

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD+ RFH FKDG CSCGD+W
Sbjct: 724 RDAVRFHRFKDGTCSCGDFW 743



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 198/393 (50%), Gaps = 34/393 (8%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF---DDMPV------------ 91
           GK+IH  V+KLGFE  + V + LL+MY   G  + A+K+F   DD               
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 92  ---------------RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
                          +DS SW AMI G  Q+G A EA++   EM+++G+ MD     S+L
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
           P C     I  G  IH  I++   + +++V + LI+MY K   + +A  VFD+M +++VV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW +++  Y Q+     A   F  MQ++GI PD  TL    S  A ++        HG  
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +  G  +  V + N++V +Y K G I+ +  +F  + V+D +SW  +++ YAQ G A E 
Sbjct: 398 ITSG-LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVET 456

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLV 375
           I++F  M + + + P+  T   ++ A S  G + +G +    +     +   +   +C++
Sbjct: 457 IQLFDKMVQ-HGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMI 515

Query: 376 DMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           D++ + GR+++AM     +P    ++ W  ++S
Sbjct: 516 DLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLS 548



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 197/399 (49%), Gaps = 39/399 (9%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA-HGFFTTM 221
           NLF  NNL+  Y+K G++      F+++ +RD V+WN +I  Y  S     A   + T M
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           +        +TL+++  + +        + +HG +++ G F   +++G+ ++ MYA +G 
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGC 189

Query: 282 INSACAVFEGLP------------------------------VKDVISWNTLITGYAQNG 311
           I+ A  VF GL                                KD +SW  +I G AQNG
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           LA EAIE F+ M +   +  +Q  + S+LPA   +GA+ +G +IHA +I+      ++V 
Sbjct: 250 LAKEAIECFREM-KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+DMY KC  +  A ++F ++ + + V W A++  +G  G+ ++A+  F  M   G+ 
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PDH T    ++AC++   + EG + FH      G+  ++     +V L+G+ G +  +  
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
               M VR DA  W A++ A    G     AV + +LF+
Sbjct: 428 LFNEMNVR-DAVSWTAMVSAYAQFGR----AVETIQLFD 461



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 179/362 (49%), Gaps = 9/362 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI    + G   EA++CF +  +  GL+ D Y F  VL AC  L    +GK+IH  +++ 
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKV-QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT 299

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+  ++V ++L+ MYC+    + A+ +FD M  ++  SW AM+ GY Q+G A EA+ I 
Sbjct: 300 NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF 359

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D  T+   +  CA   ++  G   H   +  GL   + VSN+L+ +Y K 
Sbjct: 360 LDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKC 419

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + R+F++M  RD VSW ++++AY Q    +     F  M Q G++PD +TL  + 
Sbjct: 420 GDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVI 479

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
           S  ++       +     +      +  +   + ++D++++ G +  A     G+P   D
Sbjct: 480 SACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPD 539

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSHVGALRQG 352
            I W TL++     G         + + E +  +P   T +S + A    +  V  LR+G
Sbjct: 540 AIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRG 599

Query: 353 IK 354
           ++
Sbjct: 600 MR 601



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 66/328 (20%)

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
           N  R  + +HG I+R   + E  +  N +V  YA +     A  VF+ +P  ++ SWN L
Sbjct: 20  NQSRYVKMIHGNIIRALPYPETFLYNN-IVHAYALMKSSTYARRVFDRIPQPNLFSWNNL 78

Query: 304 ITGYAQNGLASE-------------------------------AIEVFQMMEECNEINPN 332
           +  Y++ GL SE                               A++ +  M      N  
Sbjct: 79  LLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT 138

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK------------ 380
           + T +++L   S  G +  G +IH +VIK      + V + L+ MY              
Sbjct: 139 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFY 198

Query: 381 -------------------CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                              CG I+DA+ LF  + +  SV W A+I     +G   +A+  
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAKEAIEC 257

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           FR+M  +G++ D   F S+L AC   G ++EG++  H        + H+     ++D++ 
Sbjct: 258 FREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQ-IHACIIRTNFQDHIYVGSALIDMYC 316

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +   L  A      M  +   S W A++
Sbjct: 317 KCKCLHYAKTVFDRMKQKNVVS-WTAMV 343


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/735 (33%), Positives = 395/735 (53%), Gaps = 73/735 (9%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRDSGSWNA 99
           +L   ++ H  +L+L    D  +  SLL  Y          ++  L   +P     S+++
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +I  + +S +    L     +    +  D   + S +  CA    +  G  +H +    G
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
              +  V+++L +MY K   +  A ++FD+M +RDVV W+++IA Y +      A   F 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 220 TMQQAGIQPDLL-----------------------------------TLVSLTSIVAQLN 244
            M+  G++P+L+                                   T+  +   V  L 
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLE 254

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           D      VHG+++++G    D  + +A++DMY K G +     VF+ +   ++ S N  +
Sbjct: 255 DVVVGAQVHGYVIKQG-LGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFL 313

Query: 305 TGYAQNGLASEAIEVF-----QMME-----------ECNE------------------IN 330
           TG ++NG+   A+EVF     Q ME            C++                  + 
Sbjct: 314 TGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVE 373

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN  T  S++PA  ++ AL  G +IH   ++  +  DV+V + L+DMY KCGRI  A   
Sbjct: 374 PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRC 433

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++   + V WNA++  + +HG+  + +  F  ML  G +PD +TF  +L+AC+ +GL 
Sbjct: 434 FDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLT 493

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            EG R ++ M EE GI+P ++HY C+V L  R G L  A++ I+ MP  PDA +WGALL 
Sbjct: 494 EEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           +CR+H N+ LG +A+++LF ++  N G Y+L+SNIYA+ G W+  + +R + + +GL+K 
Sbjct: 554 SCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKN 613

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PG+S IEV +KV +   G+++HP+ + I ++L  L  +MK  GY+P  +FVLQDVEE +K
Sbjct: 614 PGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDK 673

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E IL  HSE+LA+  G++++ P  P+Q+ KNLR+C DCH   K IS++  REI VRD+NR
Sbjct: 674 EQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNR 733

Query: 691 FHHFKDGICSCGDYW 705
           FHHFKDG+CSCGD+W
Sbjct: 734 FHHFKDGVCSCGDFW 748



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 222/461 (48%), Gaps = 77/461 (16%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L PD +  P  +K+C   R L  G+++H      GF  D  VA+SL HMY +      AR
Sbjct: 100 LIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDAR 159

Query: 84  KLFDDMPVRD----------------------------SG-------SWNAMISGYCQSG 108
           KLFD MP RD                            SG       SWN M++G+  +G
Sbjct: 160 KLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNG 219

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              EA+ +   M ++G   D  TV+ +LP     ++++ G  +H Y++K GL  + FV +
Sbjct: 220 FYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVS 279

Query: 169 NLINMYAKFGMMRHALRVF-----------------------------------DQMMER 193
            +++MY K G ++   RVF                                   DQ ME 
Sbjct: 280 AMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMEL 339

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +VV+W SIIA+  Q+   + A   F  MQ  G++P+ +T+ SL      ++   + + +H
Sbjct: 340 NVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIH 399

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            F +RRG F +DV +G+A++DMYAK G I  A   F+ +   +++SWN ++ GYA +G A
Sbjct: 400 CFSLRRGIF-DDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKA 458

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVAT 372
            E +E+F MM +  +  P+  T+  +L A +  G   +G + +  +  ++ +   +    
Sbjct: 459 KETMEMFHMMLQSGQ-KPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYA 517

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           CLV +  + G++++A S+  ++P    +  W A++S   +H
Sbjct: 518 CLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVH 558



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 179/395 (45%), Gaps = 60/395 (15%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M++ +   G   EAV  F +  L  G  PD  T   VL A     ++V G ++H  V+K 
Sbjct: 211 MLAGFGNNGFYDEAVGMF-RMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQ 269

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY------------- 104
           G   D FV +++L MY + G      ++FD++   + GS NA ++G              
Sbjct: 270 GLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVF 329

Query: 105 ----------------------CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                  Q+G  +EAL++  +M+  GV  + +T+ S++P C   
Sbjct: 330 NKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNI 389

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             ++ G  IH + ++ G+  +++V + LI+MYAK G ++ A R FD+M   ++VSWN+++
Sbjct: 390 SALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVM 449

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ--LND----CRNSRS-VHGF 255
             Y            F  M Q+G +PDL+T   + S  AQ  L +    C NS S  HG 
Sbjct: 450 KGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGI 509

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG-YAQNGLA 313
             +   +         +V + +++G +  A ++ + +P + D   W  L++     N L+
Sbjct: 510 EPKMEHYA-------CLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLS 562

Query: 314 SEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
              I      E+   + P N G Y+ +   Y+  G
Sbjct: 563 LGEIAA----EKLFFLEPTNPGNYILLSNIYASKG 593



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 8/228 (3%)

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA---KLGIINSACAVFEGL 292
           L+S  A L+    +R  H  I+R   F  D  +  +++  YA    L     +  +   L
Sbjct: 9   LSSSTASLS---QARQAHALILRLNLF-SDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P   + S+++LI  +A++      +  F  +     I P+     S + + + + AL  G
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLI-PDAFLLPSAIKSCASLRALDPG 123

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            ++HA    +    D  VA+ L  MY KC RI DA  LF ++P    V W+A+I+ +   
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           G  ++A   F +M   GV P+ +++  +L    ++G   E    F MM
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/634 (37%), Positives = 361/634 (56%), Gaps = 3/634 (0%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +  L N A+ L    P R   +W A+ISG  Q+G    AL    +MR E +  +  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
                          +G  IH   +K G   + FV  +  +MY+K G+   A R+FD+M 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            R+V  WN+ I+       P  A   F   ++ G +PDL+T  +  +  A        R 
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG ++R G F  DV + N ++D+Y K   +  A  VF G+  ++ +SW T++    QN 
Sbjct: 181 LHGLVIRSG-FEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQND 239

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              +A  VF +M     I        S++ AY+ +  L  G  +HA  +K C+  D+FV 
Sbjct: 240 EKEKACVVF-LMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVG 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + LVDMYGKCG I+D   +F+++P  + V WNA+IS +   G  D A+  F +M  E V 
Sbjct: 299 SALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV- 357

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            +++T + +L+ACS  G V  G   F  M++ + I+P  +HY C+ D+ GRAG +  A+ 
Sbjct: 358 ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYE 417

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           F+Q MP+RP  S+WGALL ACR++G  ELG +A+D LF++D ++ G +VL+SN++A  G+
Sbjct: 418 FVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGR 477

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W+    VR   +D G+KK  G S +   NKV +F   + +H +  +I   L  L  +M++
Sbjct: 478 WDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQA 537

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY+PD ++ L D+EE+EK   +  HSE++A+AFG+I+ PP  PI+I KNLR+CGDCH+ 
Sbjct: 538 AGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSA 597

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KFIS I  REIIVRD+NRFH F+D  CSC D+W
Sbjct: 598 FKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 228/457 (49%), Gaps = 25/457 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS  V+ G  S A+  ++       ++P+ +TFP   KA   L     GK+IH   LKL
Sbjct: 29  LISGSVQNGYFSSAL-LYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKL 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   D FV  S   MY + GL   A++LFD+MP R+   WNA IS     G   +A+D  
Sbjct: 88  GQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKF 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R  G   D IT  + L  CA +  +  G  +H  +++ G E ++ V+N +I++Y K 
Sbjct: 148 IEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKC 207

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A  VF+ M  R+ VSW +++AA EQ+++   A   F   ++ GI+     + S+ 
Sbjct: 208 KEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVI 267

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A ++     RSVH   + +     D+ +G+A+VDMY K G I     VF  +P +++
Sbjct: 268 SAYAGISGLEFGRSVHALAV-KACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNL 326

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-- 355
           +SWN +I+GYA  G    A+ +F+ M+  +E   N  T + +L A S  GA++ G +I  
Sbjct: 327 VSWNAMISGYAHQGDVDMAMTLFEEMQ--SEAVANYVTLICVLSACSRGGAVKLGNEIFE 384

Query: 356 ----HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHG 410
                 R+      +      C+ DM G+ G ++ A     ++P R +   W A+++   
Sbjct: 385 SMRDRYRIEPGAEHY-----ACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACR 439

Query: 411 IHGQGD----KALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++G+ +     A N F+  LD     +H+   ++  A
Sbjct: 440 VYGEPELGKIAADNLFK--LDPKDSGNHVLLSNMFAA 474


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 386/713 (54%), Gaps = 72/713 (10%)

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
            A SL+  +   G    A   FD +P   RD+   NAM+S + ++  A  A+ +   +  
Sbjct: 96  AATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLG 155

Query: 123 EG-VSMDPITVASILPVCARSDNILSG--LLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            G +  D  +  +++    +  N+ +     +H  ++K G    L VSN LI +Y K   
Sbjct: 156 SGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDT 215

Query: 180 MR---HALRVFDQMMERDVVSW-------------------------------NSIIAAY 205
                 A +V D+M ++D ++W                               N++I+ Y
Sbjct: 216 PEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGY 275

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFME 264
            QS     A   F  M    +  D  T  S+ S  A      + +SVHG I+R +  F+ 
Sbjct: 276 VQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVP 335

Query: 265 DVI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           +    + NA+V +Y+K G I  A  +F+ + +KDV+SWNT+++GY  +G   +A+EVF++
Sbjct: 336 EAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKV 395

Query: 323 MEECN------------------------------EINPNQGTYVSILPAYSHVGALRQG 352
           M   N                              ++ P   TY   + A   +GAL+ G
Sbjct: 396 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG 455

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            ++HA +++            L+ MY KCG ++DA  +F  +P   SV WNA+IS  G H
Sbjct: 456 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 515

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +AL  F QM+ EG+ PD I+F+++LTAC+H+GLV EG  YF  M+ +FGI P   H
Sbjct: 516 GHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDH 575

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y  ++DL GR+G +G A + I+ MP  P  SIW A+L  CR +G+ME GA A+D+LF + 
Sbjct: 576 YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI 635

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            ++ G Y+L+SN Y+  G+W     VR L RDRG+KK PG S IEV +K+ +F  G+  H
Sbjct: 636 PQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKH 695

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ +++Y  L  + A+M+ LGYVPD  FVL D+E  EKE+IL +HSE+LA+ FG++  PP
Sbjct: 696 PEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPP 755

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + + + KNLR+CGDCH    F+S+   REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 756 GATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 252/558 (45%), Gaps = 97/558 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDG--KKIHCSVL 55
           M+S + R    + AV  F+    +  LRPD Y+F  ++ A     NL      ++HCSVL
Sbjct: 133 MMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVL 192

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANV---ARKLFDDMPVRDSGS---------------- 96
           K G    + V+ +L+ +Y +         ARK+ D+MP +D  +                
Sbjct: 193 KSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNA 252

Query: 97  ---------------WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
                          WNAMISGY QSG   +A ++   M  E V +D  T  S+L  CA 
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 312

Query: 142 SDNILSGLLIHLYIVKHGLEF----NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           +   + G  +H  I++    F     L V+N L+ +Y+K G +  A R+FD M  +DVVS
Sbjct: 313 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 372

Query: 198 WNSIIAAYEQS----------------ND-------PITAHG--------FFTTMQQAGI 226
           WN+I++ Y  S                ND           HG         F  M+   +
Sbjct: 373 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 432

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P   T     +   +L   ++ R +H  +++ G F      GNA++ MYAK G +N A 
Sbjct: 433 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG-FEASNSAGNALLTMYAKCGAVNDAR 491

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSH 345
            VF  +P  D +SWN +I+   Q+G   EA+E+F QM+ E   I+P++ ++++IL A +H
Sbjct: 492 LVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAE--GIDPDRISFLTILTACNH 549

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            G + +G      + ++   F +         L+D+ G+ GRI +A  L   +P   +  
Sbjct: 550 AGLVDEGFHYFESMKRD---FGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 606

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVR--PDHI-TFVSLLTACSHSGLVSEGQRYF 457
            W AI+S  G    GD  + F     D+  R  P H  T++ L    S +G   +  R  
Sbjct: 607 IWEAILS--GCRTNGD--MEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVR 662

Query: 458 HMMQEEFGIKPHLKHYGC 475
            +M++  G+K   K  GC
Sbjct: 663 KLMRDR-GVK---KEPGC 676


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/736 (33%), Positives = 418/736 (56%), Gaps = 58/736 (7%)

Query: 26   GLRPDFYTFPPV-LKACR----NLVDGK----KIHCSVLKLGFEWDVFVAASLLHMYCRF 76
            G     Y +PP+ L++C      + +G      +H   +K G    +  A  LL +Y + 
Sbjct: 278  GFSVSSYFYPPLWLQSCSLFHSTISNGPPPLGTLHALSVKNGSLQTLNSANYLLTLYVKS 337

Query: 77   GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
               + ARKLFD++P R++ +W  +ISG+ ++G++     +  EMR +G   +  T++S+ 
Sbjct: 338  SNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLF 397

Query: 137  PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
              C+   N+  G  +H +++++G++ ++ + N+++++Y K  +  +A RVF+ M E DVV
Sbjct: 398  KCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVV 457

Query: 197  SWNSIIAAYEQSNDPITAHGFFTT-------------------------------MQQAG 225
            SWN +I+AY ++ D   +   F                                 M + G
Sbjct: 458  SWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECG 517

Query: 226  IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
             +  ++T      + + L+     R +HG +++ G F  D  I +++V+MY K G +++A
Sbjct: 518  TEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFG-FCRDGFIRSSLVEMYCKCGRMDNA 576

Query: 286  CAVFEGLPV----------------KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
              V + +P+                  ++SW  +++GY  NG   + ++ F++M     +
Sbjct: 577  SIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVR-ELV 635

Query: 330  NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
              +  T  +I+ A ++ G L  G  +HA   K     D +V + L+DMY K G +DDA +
Sbjct: 636  VVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWT 695

Query: 390  LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
            +F Q    + V W ++IS   +HGQG +A+  F +ML++G+ P+ +TF+ +L AC H+GL
Sbjct: 696  IFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGL 755

Query: 450  VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
            + EG RYF MM++ + I P ++H   MVDL+GRAGHL    NFI    +    S+W + L
Sbjct: 756  LEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFL 815

Query: 510  GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             +CR+H N+E+G   S+ L +V   + G YVL+SN+ A+  +W+    VRSL   RG+KK
Sbjct: 816  SSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKK 875

Query: 570  TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
             PG S I++ +++  F  G+R+HP+ E+IY  L  L  ++K +GY  D   V+QDVEE++
Sbjct: 876  QPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQ 935

Query: 630  KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
             E +++ HSE+LA+ FGII++  ++PI+I KNLR+C DCHN+ K+ SQ+ +REII+RD +
Sbjct: 936  GEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIH 995

Query: 690  RFHHFKDGICSCGDYW 705
            RFHHFK G CSCGDYW
Sbjct: 996  RFHHFKHGGCSCGDYW 1011


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/578 (40%), Positives = 363/578 (62%), Gaps = 13/578 (2%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGL-----EFNLFVSNNLINMYAKFGMMRHALRVFD 188
           S++ +C  S + L    IH + ++HG+     +FN  +   L+++ A    M  A ++F+
Sbjct: 39  SLVQLCGSSQSKLKQ--IHAFSIRHGVPPQNPDFNKHLIFALVSLSAP---MSFAAQIFN 93

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCR 247
           Q+   ++ +WN++I  + +S +P  A   F+ M  A  I PD  T   L   VA+L D  
Sbjct: 94  QIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  ++R G F     + N++V MY+ LG + SA  VFE +  +D ++WN++I G+
Sbjct: 154 LGEGIHSVVVRNG-FDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGF 212

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           A NG+ +EA+ +++ M     + P+  T VS+L A   +GAL  G ++H  ++K  L  +
Sbjct: 213 ALNGMPNEALTLYREMGS-EGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
              +  L+D+Y KCG   DA  +F ++   S V W ++I    ++G G++AL  F ++  
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           +G++P  ITFV +L ACSH G++ EG  YF  M+EE+GI P ++H+GCMVDL  RAG +G
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A+++I+NMPV P+A IW  LLGAC IHG++ELG VA   +  ++  + G +VL+SN+YA
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
           +  +W  V  VR +   +G+KKTPG+S +E+ N+V  F  G+R+HP+ E+ Y  L  +T 
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            +K  GYVP    VL D+EE+EKE  L+ H+E++AIAF ++++PP +PI+I KNLRVC D
Sbjct: 512 LLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCAD 571

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH   K IS++ EREIIVRD +RFHHFKDG CSC DYW
Sbjct: 572 CHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 18/315 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  +      S AV+ F Q    S + PD +TFP + KA   L+D   G+ IH  V++ 
Sbjct: 106 MIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN 165

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+   FV  SL+HMY   G    A ++F+ M  RD  +WN++I+G+  +G   EAL + 
Sbjct: 166 GFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLY 225

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  EGV  D  T+ S+L  C     +  G  +H+Y+VK GL  N   SN L+++Y+K 
Sbjct: 226 REMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKC 285

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  R A +VFD+M ER VVSW S+I     +     A   F  +++ G++P  +T V + 
Sbjct: 286 GNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVL 345

Query: 238 SIVAQ-------LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
              +         N  R  +  +G + R       +     +VD+  + G +  A     
Sbjct: 346 YACSHCGMLDEGFNYFRRMKEEYGILPR-------IEHHGCMVDLLCRAGKVGDAYDYIR 398

Query: 291 GLPV-KDVISWNTLI 304
            +PV  + + W TL+
Sbjct: 399 NMPVPPNAVIWRTLL 413


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/668 (39%), Positives = 396/668 (59%), Gaps = 9/668 (1%)

Query: 44   LVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
            L+ G+++H  +L+ G  +  + ++  L++MY + G  + A ++F  +  RD  SWN +IS
Sbjct: 390  LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 103  GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
               Q+G    A+     MR   +S       S L  CA    + +G  +H   VK GL+ 
Sbjct: 450  VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 163  NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH-GFFTTM 221
            +  VSN L+ MY   G    +  +F+ M E D+VSWNSI+     S+ P       F+ M
Sbjct: 510  DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNM 569

Query: 222  QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
             ++G+ P+ +T V+L S ++ L+     + VH  +++ G  +ED  + NA++  YAK G 
Sbjct: 570  MRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHG-AIEDNAVDNALMSCYAKSGD 628

Query: 282  INSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            ++S   +F  +   +D +SWN++I+GY  NG   E ++   +M   N++  +  T+  +L
Sbjct: 629  MDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQM-LDCCTFSIVL 687

Query: 341  PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
             A + V AL +G+++HA  I++ L  DV V + L+DMY KCGRID A  +F  + + +  
Sbjct: 688  NACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEF 747

Query: 401  PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
             WN++IS +  HG G+KAL  F +M   G  PDH+TFVS+L+ACSH+GLV  G  YF MM
Sbjct: 748  SWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMM 807

Query: 461  QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN--- 517
             E+ GI PH++HY C++DL GRAG L     +I  MP++P+  IW  +L ACR   +   
Sbjct: 808  -EDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDR 866

Query: 518  MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
            ++LG  AS  L E++ +N   YVL SN YA  G+WE   + R+      +KK  G S + 
Sbjct: 867  IDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVT 926

Query: 578  VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
            + + V  F  G+R+HP  ++IY++L  L  K+K+ GYVP   F L D+EE+ KE +L+ H
Sbjct: 927  LGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYH 986

Query: 638  SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
            SE+LA+AF +  S    PI+I KNLRVCGDCH   ++ISQI  R+II+RDS RFHHF+DG
Sbjct: 987  SEKLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDG 1046

Query: 698  ICSCGDYW 705
             CSCGDYW
Sbjct: 1047 KCSCGDYW 1054



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 258/544 (47%), Gaps = 34/544 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSG--LRPDFYTFPPVLKACRN-----LVDGKKIHCS 53
           ++S YV  G   EA   F           RP  +TF  VL+AC++     L    ++H  
Sbjct: 128 LVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGL 187

Query: 54  VLKLGFEWDVFVAASLLHMY--CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
           V K  +  +  V  +L+ MY  C  GL   A+++FD  PVRD  +WNA++S Y + G  V
Sbjct: 188 VSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVV 247

Query: 112 EAL---------DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY--IVKHGL 160
                       D   E+R    +   +  A+ L  C+      SG+L  ++  ++K G 
Sbjct: 248 STFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCS------SGVLDQVFARVLKSGS 301

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             +L+V + L++ +A+ GM+  A  +F  + ER+ V+ N +I    + +    A G F  
Sbjct: 302 SSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMG 361

Query: 221 MQQAGIQPDLLTLVSLTSIVAQL----NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            + + +  +  T V L S VA+     +     R VHG I+R G     + + N +V+MY
Sbjct: 362 TRDSFVV-NTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMY 420

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           AK G I+ A  VF  L  +D +SWNT+I+   QNG    A+  + MM +   I+P+    
Sbjct: 421 AKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQ-GCISPSNFAA 479

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           +S L + + +  L  G ++H   +K  L  D  V+  LV MYG CG   ++  +F  +  
Sbjct: 480 ISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAE 539

Query: 397 SSSVPWNAIISCH-GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
              V WN+I+      H    +++  F  M+  G+ P+ +TFV+LL+A S   ++  G++
Sbjct: 540 HDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQ 599

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
              ++ +   I+ +      M   + ++G +        +M  R DA  W +++     +
Sbjct: 600 VHAVVLKHGAIEDNAVDNALM-SCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYN 658

Query: 516 GNME 519
           G+++
Sbjct: 659 GHLQ 662



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 229/481 (47%), Gaps = 24/481 (4%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           +++H  ++K G   D+F++  L+++Y +      AR++FD M  R++ SW  ++SGY  S
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 108 GNAVEALDILDEMRLEGVSMD---PITVASILPVC--ARSDNILSGLLIHLYIVKHGLEF 162
           G   EA  +   M  EG       P T  S+L  C  A  D +   + +H  + K     
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 163 NLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           N  V N LI+MY     G+   A +VFD    RD+++WN++++ Y +    ++    F  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 221 M----QQAGIQPDLLTLVSLTSIVAQLNDCRNS--RSVHGFIMRRGWFMEDVIIGNAVVD 274
           M        ++P+  T  SL +  + L+ C +     V   +++ G    D+ +G+A+V 
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSG-SSSDLYVGSALVS 313

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            +A+ G+++ A  +F  L  ++ ++ N LI G  +   + EA+ +F    +   +N +  
Sbjct: 314 AFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTD-- 371

Query: 335 TYVSILPAYSHVG----ALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMS 389
           T+V +L A +        L +G ++H  +++  L    + ++  LV+MY KCG ID A  
Sbjct: 372 TFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASR 431

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     V WN IIS    +G  + A+  +  M    + P +   +S L++C+   L
Sbjct: 432 VFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRL 491

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           ++ GQ+  H    ++G+         +V ++G  G    +     +M    D   W +++
Sbjct: 492 LTAGQQ-VHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSM-AEHDIVSWNSIM 549

Query: 510 G 510
           G
Sbjct: 550 G 550



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 197/397 (49%), Gaps = 8/397 (2%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           + P  +     L +C   R L  G+++HC  +K G + D  V+ +L+ MY   G  + + 
Sbjct: 472 ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESW 531

Query: 84  KLFDDMPVRDSGSWNAMISGYCQS-GNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           ++F+ M   D  SWN+++     S     E++++   M   G++ + +T  ++L   +  
Sbjct: 532 EIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPL 591

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-ERDVVSWNSI 201
             +  G  +H  ++KHG   +  V N L++ YAK G M    ++F  M   RD VSWNS+
Sbjct: 592 SVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSM 651

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y  +            M  +    D  T   + +  A +        +H F + R  
Sbjct: 652 ISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGI-RSQ 710

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              DV++ +A++DMY+K G I+ A  VF  +  K+  SWN++I+GYA++GL  +A+E+F+
Sbjct: 711 LESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFE 770

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+  N   P+  T+VS+L A SH G + +G+     +  + +   +   +C++D+ G+ 
Sbjct: 771 EMQR-NGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRA 829

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
           G++        ++P + +++ W  ++        GD+
Sbjct: 830 GKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDR 866



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y+  G L E +DC +   + S    D  TF  VL AC +   L  G ++H   ++ 
Sbjct: 651 MISGYIYNGHLQETMDCVW-LMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRS 709

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E DV V ++LL MY + G  + A K+F+ M  ++  SWN+MISGY + G   +AL+I 
Sbjct: 710 QLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIF 769

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM+  G   D +T  S+L  C+ +  +  GL     +  HG+  ++   + +I++  + 
Sbjct: 770 EEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRA 829

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND 210
           G +       ++M M+ + + W +++ A  QS D
Sbjct: 830 GKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKD 863


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/659 (37%), Positives = 376/659 (57%), Gaps = 45/659 (6%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQ 106
           ++H  VL+ G   D +V+ +LL  Y     +N   A K+F  +P  +   WN +I G  +
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +    +A+     M ++    +  T  ++   C+ +  +  G  IH ++VKHG+  ++ +
Sbjct: 111 NNKLFKAIYFYGRMVIDARP-NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            +  I MYA FG +  A ++F    E DVV WN++I  Y +      A G F  M    I
Sbjct: 170 KSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI 228

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
                                             W        N +++  AK G +  A 
Sbjct: 229 G--------------------------------SW--------NVMINGLAKGGNLGDAR 248

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F+ +  +D ISW++++ GY   G   EA+E+FQ M+   E  P +    S+L A S++
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNI 307

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GA+ QG  +HA + +N +  D  + T L+DMY KCGR+D    +F ++       WNA+I
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMI 367

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
               IHG+ + AL  F ++ +  ++P+ IT V +LTAC+H+G V +G R F  M+E +G+
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV 427

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P L+HYGCMVDL GR+G    A + I +MP++P+A++WGALLGACRIHGN +L      
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGK 487

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L E++ +N G YVL+SNIYA VG+++ V ++R L ++RG+K  PG S +++N  V  F 
Sbjct: 488 ILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFK 547

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+ ++IY +L+ +  +++  G+ PD S VL D++E+EKE  +  HSE+LAIAFG
Sbjct: 548 MGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFG 607

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I++ P   I I KNLRVC DCH+ TK ISQI +REIIVRD  R+HHFK+G CSC D+W
Sbjct: 608 LINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 174/402 (43%), Gaps = 72/402 (17%)

Query: 28  RPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           RP+ +T+P + KAC   + + +G++IH  V+K G   DV + ++ + MY  FG    ARK
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARK 188

Query: 85  ------------------------------LFDDMPVRDSGSWNAMISGYCQSGNA---- 110
                                         LF  MPV++ GSWN MI+G  + GN     
Sbjct: 189 MFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDAR 248

Query: 111 ---------------------------VEALDILDEMRLEGVSMDPITVASILPVCARSD 143
                                       EAL+I  +M+ E        ++S+L  C+   
Sbjct: 249 KLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIG 308

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            I  G  +H Y+ ++ ++ +  +   L++MYAK G +     VF++M ER++ +WN++I 
Sbjct: 309 AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIG 368

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                     A   F+ +Q+  ++P+ +TLV + +  A        + +  F   R ++ 
Sbjct: 369 GLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV--DKGLRIFQTMREFYG 426

Query: 264 EDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
            D  + +   +VD+  + G+ + A  +   +P+K +   W  L+     +G    A  V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +++ E      N G YV +   Y+ VG      KI  +++KN
Sbjct: 487 KILLELEP--QNSGRYVLLSNIYAKVGRFDDVSKIR-KLMKN 525


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 264/727 (36%), Positives = 403/727 (55%), Gaps = 74/727 (10%)

Query: 50  IHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFD--------------------- 87
           +HC VL+ L      +V   LL  Y R G   +AR+LFD                     
Sbjct: 31  VHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHAR 90

Query: 88  ----------DMPVRDSGSWNAMISGYCQSGNAVEALD-----ILDEMRLEGVSMDP--I 130
                      MP RD+ S+NA+I+G+  +G    A       + +E  ++G  + P  I
Sbjct: 91  LLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRI 150

Query: 131 TVAS-ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           T++  ++   A  D  L G  +H  I++ G     F  + L++MYAK G++  A RVFD+
Sbjct: 151 TMSGMVMAASALGDRAL-GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDE 209

Query: 190 -------------------------------MMERDVVSWNSIIAAYEQSNDPITAHGFF 218
                                          M++RD ++W +++    Q+     A   F
Sbjct: 210 MVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVF 269

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M+  G+  D  T  S+ +    L      + +H + +R   +  ++ +G+A+VDMY+K
Sbjct: 270 RRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT-LYDGNIFVGSALVDMYSK 328

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
              I  A AVF  +  K++ISW  +I GY QNG   EA+ VF  M+  + I PN  T  S
Sbjct: 329 CRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQT-DGIKPNDFTLGS 387

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           ++ + +++ +L +G + H   + + L   + V++ LV +YGKCG I+DA  LF ++P   
Sbjct: 388 VISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHD 447

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V + A++S +   G+  + ++ F +ML +GV+P+ +TF+ +L+ACS SGLV +G  YFH
Sbjct: 448 QVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFH 507

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            MQ++ GI     HY CM+DL+ R+G L  A  FI+ MP  PDA  W  LL ACR+ G+M
Sbjct: 508 SMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDM 567

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           E+G  A++ L + D +N   YVL+ +++A+ G+W  V  +R   RDR +KK PG S I+ 
Sbjct: 568 EIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKY 627

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            N+V IF   +++HP    IY++L+ L +KM   GY PD S VL DV + EK H+L++HS
Sbjct: 628 KNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHS 687

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIAFG+I  P + PI++ KNLRVC DCHN TKFIS+IT R+I+VRD+ RFH F +GI
Sbjct: 688 EKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGI 747

Query: 699 CSCGDYW 705
           CSCGD+W
Sbjct: 748 CSCGDFW 754



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 206/423 (48%), Gaps = 38/423 (8%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           +RP   T   ++ A   L D   G+++HC +++LGF    F  + L+ MY + GL   A+
Sbjct: 145 VRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAK 204

Query: 84  KLFDDMPV-------------------------------RDSGSWNAMISGYCQSGNAVE 112
           ++FD+M V                               RDS +W  M++G  Q+G   E
Sbjct: 205 RVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSE 264

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           ALD+   MR EGV +D  T  SIL  C        G  IH Y ++   + N+FV + L++
Sbjct: 265 ALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVD 324

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           MY+K   +R A  VF +M  ++++SW ++I  Y Q+     A   F+ MQ  GI+P+  T
Sbjct: 325 MYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFT 384

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           L S+ S  A L         H   +  G     + + +A+V +Y K G I  A  +F+ +
Sbjct: 385 LGSVISSCANLASLEEGAQFHCMALVSG-LRPYITVSSALVTLYGKCGSIEDAHRLFDEM 443

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P  D +S+  L++GYAQ G A E I++F+ M     + PN  T++ +L A S  G + +G
Sbjct: 444 PFHDQVSYTALVSGYAQFGKAKETIDLFEKM-LLKGVKPNGVTFIGVLSACSRSGLVEKG 502

Query: 353 IK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SSSVPWNAIISCHG 410
               H+    + +       TC++D+Y + GR+ +A     Q+PR   ++ W  ++S   
Sbjct: 503 CSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACR 562

Query: 411 IHG 413
           + G
Sbjct: 563 LRG 565



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 174/369 (47%), Gaps = 23/369 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           M++   + G  SEA+D F +     G+  D YTF  +L AC  L    +GK+IH   ++ 
Sbjct: 252 MVTGLTQNGLQSEALDVFRRMR-AEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT 310

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ ++FV ++L+ MY +     +A  +F  M  ++  SW AMI GY Q+G   EA+ + 
Sbjct: 311 LYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVF 370

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+ +G+  +  T+ S++  CA   ++  G   H   +  GL   + VS+ L+ +Y K 
Sbjct: 371 SEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKC 430

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD+M   D VS+ ++++ Y Q          F  M   G++P+ +T + + 
Sbjct: 431 GSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVL 490

Query: 238 SIVAQL----NDCRNSRSV---HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           S  ++       C    S+   HG ++    +         ++D+Y++ G +  A     
Sbjct: 491 SACSRSGLVEKGCSYFHSMQQDHGIVLLDDHY-------TCMIDLYSRSGRLKEAEEFIR 543

Query: 291 GLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSH 345
            +P   D I W TL++     G         + + + +  NP     +  + A    +S 
Sbjct: 544 QMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSE 603

Query: 346 VGALRQGIK 354
           V  LR+G++
Sbjct: 604 VALLRRGMR 612


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/714 (37%), Positives = 409/714 (57%), Gaps = 15/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y +     +A+  FY   L  G++ +  TF  VL AC  L D +     ++KL  E
Sbjct: 172 MITAYAQQDHHEQAIQVFYAMLL-EGVKAERITFIGVLDACSKLKDLEV--AKLVKLCVE 228

Query: 61  -------WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
                   D   A +L++ Y   G    A + F    + +     AMI+ Y Q     EA
Sbjct: 229 EREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRL-ELILATAMITQYTQRERWDEA 287

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L++   M LEGV +D I   ++L  C+    +  G +IH ++ +   + ++   N LINM
Sbjct: 288 LELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINM 347

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A+ VF  M  RDV+SWN+IIAA+ Q +    A      MQ  G++ D ++ 
Sbjct: 348 YGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISF 407

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           V+   + A        R +H +I+  G    DV++ NA++DMY      + A  VF  + 
Sbjct: 408 VNALPLCATSEALAKGRMIHSWIVESG-IKADVMLDNAILDMYGSCKSTDDASRVFRAMK 466

Query: 294 VKDVISWNTLITGYA-QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           V+D +SWN +IT YA Q  L+SEA+ +FQ M+  +   P+  ++V+ L A +   +L +G
Sbjct: 467 VRDQVSWNAMITAYAAQPRLSSEALLLFQQMQ-LHGFMPDVISFVAALSACAAQASLAEG 525

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H R+ +  L  ++ VA  +++MY K G +  A  +F ++P    + WN +IS    H
Sbjct: 526 KLLHDRIRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQH 585

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPHLK 471
           G  D+ L FFR+M  EG  P+ +TFVS+++ACSH GLV +G + F  +  +F  I P  +
Sbjct: 586 GHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAE 645

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CMVDL  RAG L  A  FI   P++PD  I   +LGA ++H ++E    +++ L E+
Sbjct: 646 HYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMEL 705

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
             +    YV++SN+Y  VGK +   ++R L  ++ ++K P +SSI V  +V  F+TG+ T
Sbjct: 706 TPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTT 765

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           + +  +I +EL  L+ +M   GY PD + +L DV +++K+ +L+ HSE+LAIAFG+IS+ 
Sbjct: 766 NARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTA 825

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P + ++I KNLRVCGDCH  TKFIS+IT REI+VRDS+RFHHF +G CSCGDYW
Sbjct: 826 PGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 261/526 (49%), Gaps = 13/526 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           +I  + + G   +A+  F    L  G+ P    F  VL AC      L +G++IH  +  
Sbjct: 70  LIRAHGQIGDSEQALHLFRSMQL-EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRG 128

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E D +V+ +LLHMY +      ARK+FD +  +    WNAMI+ Y Q  +  +A+ +
Sbjct: 129 TAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQV 188

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV--KHGLEFNLFVSNNLINMY 174
              M LEGV  + IT   +L  C++  ++    L+ L +   +H    +   +  L+N Y
Sbjct: 189 FYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFY 248

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
              G +  A R F +    +++   ++I  Y Q      A   F  M   G++ D +  +
Sbjct: 249 GSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACM 307

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ +  +        R +HGF MR   F   V  GNA+++MY K G +  A  VF  +  
Sbjct: 308 AVLNACSGPRGLEEGRIIHGF-MREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH 366

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +DVISWNT+I  + Q+    EA+ +  +M + + +  ++ ++V+ LP  +   AL +G  
Sbjct: 367 RDVISWNTIIAAHGQHSQHPEALHLLHLM-QLDGVKADKISFVNALPLCATSEALAKGRM 425

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH+ ++++ +  DV +   ++DMYG C   DDA  +F  +     V WNA+I+ +    +
Sbjct: 426 IHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPR 485

Query: 415 -GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F+QM   G  PD I+FV+ L+AC+    ++EG +  H    E G++ ++   
Sbjct: 486 LSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGLESNMTVA 544

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +++++ ++G L +A      MP+ PD   W  ++ A   HG+ +
Sbjct: 545 NAVLNMYAKSGTLVLARKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 233/477 (48%), Gaps = 6/477 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           V+   R+L  GK++H  + K   +   F+   L+ MY   G    A+  FD MPV+D+ +
Sbjct: 7   VVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALT 66

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYI 155
           W  +I  + Q G++ +AL +   M+LEGV+       ++L  C+    +L  G  IH  +
Sbjct: 67  WARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVL 126

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
               +E + +VS  L++MY K   +  A +VFD +  + VV WN++I AY Q +    A 
Sbjct: 127 RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAI 186

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVD 274
             F  M   G++ + +T + +    ++L D   ++ V   +  R    + D     A+V+
Sbjct: 187 QVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVN 246

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            Y   G +  A   F    ++ +++   +IT Y Q     EA+E+F++M     +  ++ 
Sbjct: 247 FYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVM-LLEGVKLDRI 304

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
             +++L A S    L +G  IH  + +      V     L++MYGKCG +++A+ +F  +
Sbjct: 305 ACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSM 364

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                + WN II+ HG H Q  +AL+    M  +GV+ D I+FV+ L  C+ S  +++G 
Sbjct: 365 QHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKG- 423

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           R  H    E GIK  +     ++D++G       A    + M VR   S W A++ A
Sbjct: 424 RMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVS-WNAMITA 479



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 195/420 (46%), Gaps = 30/420 (7%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A +L V A S ++  G  +H  I K  ++   F+ + L+ MY   G +  A   FD+M  
Sbjct: 2   ADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPV 61

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRS 251
           +D ++W  +I A+ Q  D   A   F +MQ  G+ P     V+ L +  A        R 
Sbjct: 62  QDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRR 121

Query: 252 VHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           +HG +  RG  ME D  +   ++ MY K   +  A  VF+G+  K V+ WN +IT YAQ 
Sbjct: 122 IHGVL--RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQ 179

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL------ 364
               +AI+VF  M     +   + T++ +L A S +  L       A+++K C+      
Sbjct: 180 DHHEQAIQVFYAM-LLEGVKAERITFIGVLDACSKLKDLEV-----AKLVKLCVEEREHD 233

Query: 365 -CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D   AT LV+ YG CG ++ A   F +  R   +   A+I+ +    + D+AL  F+
Sbjct: 234 HLHDSSFATALVNFYGSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFK 292

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            ML EGV+ D I  +++L ACS    + EG R  H    E     H+     +++++G+ 
Sbjct: 293 VMLLEGVKLDRIACMAVLNACSGPRGLEEG-RIIHGFMREIRFDRHVNAGNALINMYGKC 351

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN----------MELGAVASDRLFEVDS 533
           G L  A    ++M  R D   W  ++ A   H            M+L  V +D++  V++
Sbjct: 352 GSLEEAVEVFRSMQHR-DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNA 410



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y  +L   +   +L  G ++HAR+ K+ +    F+   LV MY  CG + DA + F ++P
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS-GLVSEGQ 454
              ++ W  +I  HG  G  ++AL+ FR M  EGV P +  FV++L ACS    L+ EG+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 455 R 455
           R
Sbjct: 121 R 121


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/677 (36%), Positives = 387/677 (57%), Gaps = 15/677 (2%)

Query: 42  RNLVDGKKIHCSVLKLG--------FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +NL  GK IH  +L            E+++    SL+++Y +     +AR LFD+M +R 
Sbjct: 26  KNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRS 85

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             S+N ++ GY  SG  +E + +   M       +     ++L  CA S  +  G+  H 
Sbjct: 86  VVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHG 145

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-----ERDVVSWNSIIAAYEQS 208
           ++ K GL F+ FV ++L++MY+K   +  AL+V +        + D   +NS++ A  +S
Sbjct: 146 FLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVES 205

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A      M   G+  D +T VS+  +  Q+ D      VH  +++ G    DV +
Sbjct: 206 GRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK-GGLTFDVFV 264

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           G+ +VDM+ K G + SA  VF+GL  ++V+ W +L+T Y QNG   E + +   M+    
Sbjct: 265 GSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGT 324

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           ++ N+ T+  +L A++ + ALR G  +HARV K  +   V V   L++MY KCG ID + 
Sbjct: 325 MS-NEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSY 383

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F+ +     + WNA+I  +  HG G +AL  F+ ML  G  P+H+TFV +L+AC+H  
Sbjct: 384 DVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLA 443

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV+EG  Y + + + F ++P L+HY C+V +  RAG L  A NF++   V+ D   W  L
Sbjct: 444 LVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVL 503

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC IH N  LG   ++ + ++D  ++G Y L+SN+YA    W+ V  +R + R+R +K
Sbjct: 504 LNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVK 563

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG S IE+ N V +F +    HP+  +IY++++ L   +K LGYVP+   VL DVE++
Sbjct: 564 KEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDE 623

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           +KE  L  HSE+LAIA+G++  P  +PI++ KNLR+C DCH   K IS++T R IIVRD+
Sbjct: 624 QKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDA 683

Query: 689 NRFHHFKDGICSCGDYW 705
           +RFHHF+DG C+C D+W
Sbjct: 684 SRFHHFRDGTCTCTDHW 700


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 398/711 (55%), Gaps = 46/711 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S   + G+++ A+D      L      D      V+++C  L    +G++IH  + ++
Sbjct: 9   LLSKRQQLGQIAAAID-----ALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLMRRV 63

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DV+V+  L+ MY + G    AR +F+  P ++  SW  +I+   Q G + EAL + 
Sbjct: 64  GLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALF 123

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM  +G+    ++  + +  C+     L +G  +H  + ++G +  +  + +L++MY+K
Sbjct: 124 YEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSK 183

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  ++R F+ M E + VSWN++IAA+ +    + A      M   GI+         
Sbjct: 184 CGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRA-------- 235

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                                       DV++G  +V+MYAK   ++ A A F  L   +
Sbjct: 236 --------------------------CSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPN 269

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +I+WN LI+ Y Q+    EA+E+F+ M     +  ++ T+++IL A     AL  G  IH
Sbjct: 270 IITWNVLISAYVQHCCFKEAMELFRRMLLLG-LEMDEVTFINILGACCVPVALEDGRAIH 328

Query: 357 ARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           A V ++ L  +   +   +++MYGKCG + DA ++F  + +   + WN +I+ +G HG  
Sbjct: 329 ACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHT 388

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            +AL F+  M +EGV PD  T+VS++ A C+++GL  E   YF  MQ++ G++P   HYG
Sbjct: 389 SEALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYG 448

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMV+  G+AG L  A   IQ MP  PD   W + L  CR HG+M+ G +A+     +D E
Sbjct: 449 CMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPE 508

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
               YV ++ I+A+ G ++    +R L  DRG++K  G S I++   V  F  G++++P+
Sbjct: 509 ASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPR 568

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++I+DEL+ L  +MKS GY PD + V  DVE  +KE +L +HSERLAIAFGIIS+ P +
Sbjct: 569 SKEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGT 628

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P++I KNLRVCGDCH  TK  S+IT REIIVRDSNRFHHFK+G CSC D+W
Sbjct: 629 PLRIMKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 16/216 (7%)

Query: 301 NTLITGYAQNGLASEAIEVFQM-----MEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +TL++   Q G  + AI+  Q      ++EC          V ++ + + +GAL +G +I
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRKDADLKEC----------VRVIQSCARLGALAEGRRI 56

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  + +  L  DV+V+  LV MYGKCG +++A  +F   P  +   W  +I+    HG+ 
Sbjct: 57  HQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRS 116

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL  F +ML +G++P  ++F + + ACS         R  H +   +G +  +     
Sbjct: 117 QEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTS 176

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +V ++ + G L  +    ++M   P+A  W A++ A
Sbjct: 177 LVSMYSKCGSLEESMRTFESM-TEPNAVSWNAMIAA 211


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/642 (37%), Positives = 376/642 (58%), Gaps = 6/642 (0%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVS 126
           SL+H+Y + G   +AR LFD MP+R+  SWN +++GY   GN +E L +   M  L+   
Sbjct: 55  SLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNAC 114

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            +     + L  C+    +  G+  H  + K GL  + +V + L++MY++   +  AL+V
Sbjct: 115 PNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQV 174

Query: 187 FDQM---MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            D +      D+ S+NS++ A  +S     A      M    +  D +T V +  + AQ+
Sbjct: 175 LDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQI 234

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D +    VH  ++R G  M D  +G+ ++DMY K G + +A  VF+GL  ++V+ W  L
Sbjct: 235 RDLQLGLRVHARLLRGG-LMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTAL 293

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           +T Y QNG   E++ +F  M+    + PN+ T+  +L A + + ALR G  +HARV K  
Sbjct: 294 MTAYLQNGYFEESLNLFTCMDREGTL-PNEYTFAVLLNACAGIAALRHGDLLHARVEKLG 352

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
               V V   L++MY K G ID + ++F  +     + WNA+I  +  HG G +AL  F+
Sbjct: 353 FKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQ 412

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            M+     P+++TF+ +L+A SH GLV EG  Y + +   F I+P L+HY CMV L  RA
Sbjct: 413 DMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRA 472

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A NF++   V+ D   W  LL AC +H N +LG   ++ + ++D  +VG Y L+S
Sbjct: 473 GLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLS 532

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           N+YA   +W+GV  +R L R+R +KK PG S +++ N + +F +    HP+  +IY +++
Sbjct: 533 NMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQ 592

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            L A +K LGYVP+ + VL DVE+++KE  L+ HSE+LA+A+G++  P  +PI+I KNLR
Sbjct: 593 QLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLR 652

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +C DCH   K IS++T R IIVRD+NRFHHF+DG C+C D+W
Sbjct: 653 MCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 224/418 (53%), Gaps = 25/418 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +++ Y+  G   E +  F          P+ Y F   L AC +   + +G + H  + K 
Sbjct: 87  LMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKF 146

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEAL 114
           G     +V ++L+HMY R     +A ++ D +P   V D  S+N++++   +SG   EA+
Sbjct: 147 GLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAV 206

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           ++L  M  E V+ D +T   ++ +CA+  ++  GL +H  +++ GL F+ FV + LI+MY
Sbjct: 207 EVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMY 266

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G + +A  VFD +  R+VV W +++ AY Q+     +   FT M + G  P+  T  
Sbjct: 267 GKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFA 326

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            L +  A +   R+   +H  + + G F   VI+ NA+++MY+K G I+S+  VF  +  
Sbjct: 327 VLLNACAGIAALRHGDLLHARVEKLG-FKNHVIVRNALINMYSKSGSIDSSYNVFTDMIY 385

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMM---EECNEINPNQGTYVSILPAYSHVGALRQ 351
           +D+I+WN +I GY+ +GL  +A++VFQ M   EEC    PN  T++ +L AYSH+G +++
Sbjct: 386 RDIITWNAMICGYSHHGLGKQALQVFQDMVSAEEC----PNYVTFIGVLSAYSHLGLVKE 441

Query: 352 GIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           G      +++N   F +       TC+V +  + G +D+A +      +++ V W+ +
Sbjct: 442 GFYYLNHLMRN---FKIEPGLEHYTCMVALLSRAGLLDEAENFM----KTTQVKWDVV 492



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 181/354 (51%), Gaps = 10/354 (2%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGI 226
           N+L+++Y K G +  A  +FD M  R+VVSWN ++A Y    + +     F  M      
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            P+     +  S  +     +     HG + + G       + +A+V MY++   +  A 
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQ-YVKSALVHMYSRCSHVELAL 172

Query: 287 AVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPA 342
            V + +P   V D+ S+N+++    ++G   EA+EV  +M++EC  +  +  TYV ++  
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDEC--VAWDHVTYVGVMGL 230

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + +  L+ G+++HAR+++  L FD FV + L+DMYGKCG + +A ++F  +   + V W
Sbjct: 231 CAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVW 290

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            A+++ +  +G  +++LN F  M  EG  P+  TF  LL AC+    +  G    H   E
Sbjct: 291 TALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGD-LLHARVE 349

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + G K H+     +++++ ++G +  ++N   +M  R D   W A++     HG
Sbjct: 350 KLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMICGYSHHG 402



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 150/310 (48%), Gaps = 5/310 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +++  V  GR  EAV+   +  +   +  D  T+  V+  C   R+L  G ++H  +L+ 
Sbjct: 192 VLNALVESGRGEEAVEVLRRM-VDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRG 250

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  +D FV + L+ MY + G    AR +FD +  R+   W A+++ Y Q+G   E+L++ 
Sbjct: 251 GLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLF 310

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG   +  T A +L  CA    +  G L+H  + K G + ++ V N LINMY+K 
Sbjct: 311 TCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKS 370

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  +  VF  M+ RD+++WN++I  Y        A   F  M  A   P+ +T + + 
Sbjct: 371 GSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVL 430

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  + L   +        +MR       +     +V + ++ G+++ A    +   VK D
Sbjct: 431 SAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWD 490

Query: 297 VISWNTLITG 306
           V++W TL+  
Sbjct: 491 VVAWRTLLNA 500



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 133/260 (51%), Gaps = 19/260 (7%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N++V +Y K G +  A  +F+ +P+++V+SWN L+ GY   G   E + +F+ M      
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN+  + + L A SH G +++G++ H  + K  L    +V + LV MY +C  ++ A+ 
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 390 LFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           +   VP    +    +N++++     G+G++A+   R+M+DE V  DH+T+V ++  C+ 
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 447 SGLVSEGQRYFH------MMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMPVR 499
              +  G R         +M +EF         G M +D++G+ G +  A N    +  R
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEF--------VGSMLIDMYGKCGEVLNARNVFDGLQNR 285

Query: 500 PDASIWGALLGACRIHGNME 519
            +  +W AL+ A   +G  E
Sbjct: 286 -NVVVWTALMTAYLQNGYFE 304


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/684 (35%), Positives = 386/684 (56%), Gaps = 7/684 (1%)

Query: 27  LRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           ++PD  T   ++  C +   +  G  IH   +  G    V +  +L++MY   G  + A 
Sbjct: 242 VKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAE 301

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARS 142
            LF +M  RD  SWN MIS Y QS + VEAL+ L ++ + +    + +T +S L  C+  
Sbjct: 302 SLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSP 361

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           + +++G  IH  I++  L+  L + N+L+ MY+K   M    RVF+ M   DVVS N + 
Sbjct: 362 EALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLT 421

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN-SRSVHGFIMRRGW 261
             Y    D   A   F+ M+  GI+P+ +T+++L      L D  +    +H ++ + G 
Sbjct: 422 GGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTG- 480

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + D  I N+++ MYA  G + S+  +F  +  K VISWN +I    ++G   EAI++F 
Sbjct: 481 LLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFM 540

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
             +       ++      L + +++ +L +G+++H   +KN L  D  V    +DMYGKC
Sbjct: 541 DSQHAGN-KLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKC 599

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G++D  +          +  WN +IS +  +G   +A + F+ M+  G +PD++TFV+LL
Sbjct: 600 GKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALL 659

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +ACSH+GL+ +G  Y++ M   FG+ P +KH  C+VDL GR G    A  FI  MPV P+
Sbjct: 660 SACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPN 719

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             IW +LL + R H N+++G  A+  L E+D  +   YVL+SN+YA   +W  VD++RS 
Sbjct: 720 DLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSH 779

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +   L K P  S +++ N+V  F  G+R+H   EKIY +L  +  K++ +GYV D S  
Sbjct: 780 MKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSA 839

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D +E++KEH L +HSE+LA+A+G++  P  S I+IFKNLRVC DCH   K +S +  R
Sbjct: 840 LHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHR 899

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI++RD  RFH FK G CSC D+W
Sbjct: 900 EIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/549 (27%), Positives = 264/549 (48%), Gaps = 28/549 (5%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRP-----DFYTFPPVLKACRN------LVDGKKI 50
           +S   RCG  S A      FTL   +R        +    ++ AC +         G  I
Sbjct: 13  VSGCARCGLESTA------FTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAI 66

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           H    + G   +V++  +LLH+Y   GL   A++LF +MP R+  SW A++     +G  
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCM 126

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EAL     MR EGV  +   +A+++ +C   ++ ++GL +  ++V  GL  ++ V+N+L
Sbjct: 127 EEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSL 186

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--FTTMQQAGIQP 228
           I M+     ++ A R+FD+M ERD +SWN++I+ Y  S++ + +  F   + M+   ++P
Sbjct: 187 ITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY--SHEEVYSKCFIVLSDMRHGEVKP 244

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D+ TL SL S+ A  +       +H   +  G      +I NA+V+MY+  G ++ A ++
Sbjct: 245 DVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLI-NALVNMYSTAGKLDEAESL 303

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F  +  +DVISWNT+I+ Y Q+    EA+E    + + +E  PN  T+ S L A S   A
Sbjct: 304 FRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEA 363

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L  G  IHA +++  L   + +   L+ MY KC  ++D   +F  +P    V  N +   
Sbjct: 364 LMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGG 423

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +        A+  F  M   G++P++IT ++L   C   G +       H    + G+  
Sbjct: 424 YAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLS 483

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
                  ++ ++   G L  +      +  +   S W A++ A   HG  E     + +L
Sbjct: 484 DEYITNSLITMYATCGDLESSTGIFSRINNKSVIS-WNAIIAANVRHGRGE----EAIKL 538

Query: 529 FEVDSENVG 537
           F +DS++ G
Sbjct: 539 F-MDSQHAG 546



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/496 (28%), Positives = 233/496 (46%), Gaps = 9/496 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+     G+  +      V+  C  L D   G ++   V+  G    V VA SL+ M+  
Sbjct: 133 YRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGN 192

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
                 A +LFD M  RD  SWNAMIS Y       +   +L +MR   V  D  T+ S+
Sbjct: 193 LRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSL 252

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           + VCA SD +  G  IH   V  GL  ++ + N L+NMY+  G +  A  +F  M  RDV
Sbjct: 253 VSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDV 312

Query: 196 VSWNSIIAAYEQSNDPITA-HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +SWN++I++Y QSN  + A       +Q     P+ +T  S     +      N R++H 
Sbjct: 313 ISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHA 372

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            I++R      ++IGN+++ MY+K   +     VFE +P  DV+S N L  GYA     +
Sbjct: 373 MILQRS-LQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVA 431

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ-GIKIHARVIKNCLCFDVFVATC 373
            A+ VF  M     I PN  T +++      +G L   G+ +HA V +  L  D ++   
Sbjct: 432 NAMRVFSWMRGTG-IKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNS 490

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY  CG ++ +  +F ++   S + WNAII+ +  HG+G++A+  F      G + D
Sbjct: 491 LITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLD 550

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
                  L++ ++   + EG +  H +  + G+          +D++G+ G +      +
Sbjct: 551 RFCLAECLSSSANLASLEEGMQ-LHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 494 QNMPVRPDASIWGALL 509
            +   RP    W  L+
Sbjct: 610 PDPAHRP-TQCWNTLI 624



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 207/441 (46%), Gaps = 24/441 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV+     EA++   Q   T    P+  TF   L AC +   L++G+ IH  +L+ 
Sbjct: 318 MISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQR 377

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  + +  SLL MY +        ++F+ MP  D  S N +  GY    +   A+ + 
Sbjct: 378 SLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVF 437

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             MR  G+  + IT+ ++   C    ++ S G+ +H Y+ + GL  + +++N+LI MYA 
Sbjct: 438 SWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYAT 497

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  +  +F ++  + V+SWN+IIAA  +      A   F   Q AG + D   L   
Sbjct: 498 CGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAEC 557

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L        +HG  ++ G   +  ++ NA +DMY K G ++           + 
Sbjct: 558 LSSSANLASLEEGMQLHGLSVKNGLDCDSHVV-NATMDMYGKCGKMDCMLKTLPDPAHRP 616

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
              WNTLI+GYA+ G   EA + F+ M    +  P+  T+V++L A SH G + +G+  +
Sbjct: 617 TQCWNTLISGYARYGYFKEAEDTFKHMVSVGQ-KPDYVTFVALLSACSHAGLIDKGMDYY 675

Query: 357 ARV---------IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
             +         IK+C+        C+VD+ G+ G+  +A     ++P   + + W +++
Sbjct: 676 NSMAPTFGVSPGIKHCV--------CIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLL 727

Query: 407 SCHGIHGQGDKALNFFRQMLD 427
           S    H   D      + +L+
Sbjct: 728 SSSRTHKNLDIGRKAAKNLLE 748



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 193/414 (46%), Gaps = 9/414 (2%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR---SDNI 145
           MP R S SW   +SG  + G    A  +L  MR   V +    +AS++  C      +  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH    + GL  N+++   L+++Y   G++ +A R+F +M +R+VVSW +I+ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +     A   +  M++ G+  +   L ++ S+   L D      V   ++  G  +  
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSG-LLTH 179

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V + N+++ M+  L  +  A  +F+ +  +D ISWN +I+ Y+   + S+   V   M  
Sbjct: 180 VSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRH 239

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             E+ P+  T  S++   +    +  G  IH+  + + L   V +   LV+MY   G++D
Sbjct: 240 -GEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLD 298

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTA 443
           +A SLF  + R   + WN +IS +       +AL    Q+L  DEG  P+ +TF S L A
Sbjct: 299 EAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEG-PPNSMTFSSALGA 357

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           CS    +  G R  H M  +  ++  L     ++ ++ +   +       ++MP
Sbjct: 358 CSSPEALMNG-RTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMP 410


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 357/584 (61%), Gaps = 13/584 (2%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGL-----EFNLFVSNNLINMYAKFGMMRH 182
           DP+++  ++ +C R      G LIH ++  HG         LFVSN+L +MYAKFG++  
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
           ALR+FD M  R+VV+W +++AA   ++     A  F   M++ G+ P+  T    +S++ 
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTF---SSVLG 179

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
                    +VH   ++ G    DV + ++++D Y KLG ++    VF+ +  +D++ WN
Sbjct: 180 ACTTPGMLTAVHASTVKAG-LDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWN 238

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           ++I G+AQ+G    AIE+F  M++    + NQGT  S+L A + +  L  G ++HA V+K
Sbjct: 239 SIIAGFAQSGDGVGAIELFMRMKDAG-FSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK 297

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                D+ +   L+DMY KCG ++DA +LF+++P+   + W+ ++S    +G+  +AL  
Sbjct: 298 --YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRV 355

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F  M  +GV P+H+T V +L ACSH+GLV +G  YF  M+  FGI+P  +H+ CMVDL G
Sbjct: 356 FDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLG 415

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG L  A  FI  M + PD+ IW  LLGACR+H N  L A A+  + +++ ++ G  VL
Sbjct: 416 RAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVL 475

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN YA++ +W   ++     RDRG++K PG S IE+  +V +F  G+ +HP  + I  E
Sbjct: 476 LSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQE 535

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  ++KSLGYVP   FVLQD+  ++KE +L  HSE++AI FG + +    PI+I KN
Sbjct: 536 LNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKN 595

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LR+CGDCH + K +S+   R I++RD  RFHHF+DG CSCGDYW
Sbjct: 596 LRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 204/378 (53%), Gaps = 17/378 (4%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS-GNAVEALDILDEMR 121
           +FV+ SL  MY +FGL + A ++FD MPVR+  +W  +++    + G   EAL  L  MR
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +GV+ +  T +S+L  C     + +   +H   VK GL+ ++FV ++LI+ Y K G + 
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLD 220

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
              RVFD+M+ RD+V WNSIIA + QS D + A   F  M+ AG   +  TL S+     
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +      R VH  +++   +  D+I+ NA++DMY K G +  A A+F  +P +DVISW+
Sbjct: 281 GMVMLEAGRQVHAHVLK---YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWS 337

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           T+++G AQNG + EA+ VF +M+    + PN  T V +L A SH G +  G   + R +K
Sbjct: 338 TMVSGLAQNGKSVEALRVFDLMKS-QGVAPNHVTMVGVLFACSHAGLVEDGWH-YFRSMK 395

Query: 362 NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
                        C+VD+ G+ G++D+A+   + +     SV W  ++    +H     A
Sbjct: 396 RLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLA 455

Query: 419 LNFFRQML-----DEGVR 431
               R++L     D+G R
Sbjct: 456 AYAAREILKLEPDDQGAR 473



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 170/338 (50%), Gaps = 8/338 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           GR  EA+  F       G+ P+ YTF  VL AC        +H S +K G + DVFV +S
Sbjct: 150 GRKQEALR-FLVAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSS 208

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y + G  +  R++FD+M  RD   WN++I+G+ QSG+ V A+++   M+  G S +
Sbjct: 209 LIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSN 268

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+L  C     + +G  +H +++K+  + +L + N L++MY K G +  A  +F 
Sbjct: 269 QGTLTSVLRACTGMVMLEAGRQVHAHVLKY--DRDLILHNALLDMYCKCGSLEDADALFH 326

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M +RDV+SW+++++   Q+   + A   F  M+  G+ P+ +T+V +    +      +
Sbjct: 327 RMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVED 386

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGY 307
                  + R      +    N +VD+  + G ++ A     G+ ++ D + W TL+   
Sbjct: 387 GWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGAC 446

Query: 308 AQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYS 344
             +  AS A    +   E  ++ P +QG  V +   Y+
Sbjct: 447 RMHKNASLAAYAAR---EILKLEPDDQGARVLLSNTYA 481


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/648 (37%), Positives = 355/648 (54%), Gaps = 75/648 (11%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           DP  + S L  C       +   +H   V  GL  + FV+++L++ Y + G    A  VF
Sbjct: 19  DPHLLPSALKSCPAQPLARA---LHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVF 75

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS--------- 238
           D+M E++VV W+++IA Y    D   A G    M+ AG++P+++T   L S         
Sbjct: 76  DRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRAL 135

Query: 239 --------------------------IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                                      V  + +    + VHG++++ G  ++  ++  A+
Sbjct: 136 DAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVV-TAL 194

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA------------------------ 308
           +DMY K G  +    VF      DV S N L+ G +                        
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254

Query: 309 -----------QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
                      QNG   EA+++F+ M+    + PN  T   +LPA+++V AL  G   H 
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIG-VEPNSVTIPCVLPAFANVAALMHGRSAHC 313

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             ++     DV+V + LVDMY KCG+   A ++F  +P  + V WNA+I  + +HG    
Sbjct: 314 FSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAAN 373

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F  M     +PD +TF  +L ACS +GL  EG+RYF+ MQ+  GI P ++HY CMV
Sbjct: 374 AVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMV 433

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            L GR+G L  A++ I  MP  PD+ IWG+LLG+CR++GN+ L  VA+++LF+++  N G
Sbjct: 434 TLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAG 493

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SNIYA+   W+GV+ VR   ++ GLKK  G S IE+ NKV +   G+ +HP    
Sbjct: 494 NYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTA 553

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I ++L  LT +M  LG+ P + FVL DVEE EK++IL  HSE+LA+A G+IS+ P +P++
Sbjct: 554 ITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLR 613

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLR+CGDCH   KFIS   +REI VRD+NRFHHFKDG CSCGDYW
Sbjct: 614 VIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 214/471 (45%), Gaps = 74/471 (15%)

Query: 16  DCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           +  Y F       PD +  P  LK+C      + +H + +  G   D FVA+SLLH Y R
Sbjct: 5   NSLYHFLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIR 64

Query: 76  FGLANVARKLFDDMP-----------------------------VRDSG------SWNAM 100
            G    AR +FD MP                             +R +G      +WN +
Sbjct: 65  LGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGL 124

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           +SG  +SG A++A+  L  M  EG   D   V+  L        +  G  +H Y+VK G 
Sbjct: 125 VSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGC 184

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQM------------------------------ 190
             +  V   LI+MY K G     +RVF +                               
Sbjct: 185 RLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFRE 244

Query: 191 -----MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                +E +VVSW SI+A   Q+   + A   F TMQ  G++P+ +T+  +    A +  
Sbjct: 245 FICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAA 304

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             + RS H F +R+G F+ DV +G+A+VDMYAK G    A  +F+ +P ++V+SWN +I 
Sbjct: 305 LMHGRSAHCFSLRKG-FLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIG 363

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCL 364
           GYA +G A+ A+++F  M++C +  P+  T+  +L A S  G   +G +    + + + +
Sbjct: 364 GYAMHGDAANAVQLFCSMQKCKQ-KPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGI 422

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
              +    C+V + G+ G++D+A  L  ++P    S  W +++    ++G 
Sbjct: 423 SPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGN 473



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 162/386 (41%), Gaps = 48/386 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S   R GR  +AV    +   + G  PD       L A  ++ +   GK++H  V+K 
Sbjct: 124 LVSGLNRSGRALDAVTALVRMH-SEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKA 182

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC------------ 105
           G   D  V  +L+ MY + G A+   ++F +    D  S NA+++G              
Sbjct: 183 GCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLF 242

Query: 106 -----------------------QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                  Q+G  +EA+D+   M+  GV  + +T+  +LP  A  
Sbjct: 243 REFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANV 302

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             ++ G   H + ++ G   +++V + L++MYAK G  RHA  +FD M  R+VVSWN++I
Sbjct: 303 AALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMI 362

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             Y    D   A   F +MQ+   +PDL+T   +    +Q       R     + +    
Sbjct: 363 GGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGI 422

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIE 318
              +     +V +  + G ++ A  +   +P + D   W +L+     Y    LA  A E
Sbjct: 423 SPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAE 482

Query: 319 VFQMMEECNEINPNQGTYVSILPAYS 344
               +E       N G YV +   Y+
Sbjct: 483 KLFQLEP-----GNAGNYVLLSNIYA 503


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 380/663 (57%), Gaps = 7/663 (1%)

Query: 47  GKKIHCSVLKLGFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+ IH  +++        F++  L++MY +  L N A+ +     +R   +W ++ISG  
Sbjct: 25  GRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCV 84

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            +   + AL     MR + V  +  T   +    A     ++G  IH   +K G+ +++F
Sbjct: 85  HNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVF 144

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +  +MY K G    A  +FD+M +R++ +WN+ I+   Q    + A   F       
Sbjct: 145 VGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVH 204

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
            +P+ +T  +  +    +      R +H FI+R G + EDV + N ++D Y K G I SA
Sbjct: 205 GEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCG-YKEDVSVANGLIDFYGKCGDIVSA 263

Query: 286 CAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
             VF  +   K+V+SW +++    QN     A  VF  ++   E+ P      S+L A +
Sbjct: 264 EMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF--LQARKEVEPTDFMISSVLSACA 321

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +G L  G  +HA  +K C+  ++FV + LVDMYGKCG I++A  +F ++P  + V WNA
Sbjct: 322 ELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNA 381

Query: 405 IISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +I  +   G  D AL  F +M     G+RP ++T +S+L+ CS  G V  G + F  M+ 
Sbjct: 382 MIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRL 441

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            +GI+P  +H+ C+VDL GR+G +  A+ FIQNM ++P  S+WGALLGACR+HG  ELG 
Sbjct: 442 NYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGK 501

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
           +A+++LFE+D  + G +V++SN+ A+ G+WE    VR   +D G+KK  G+S I V N++
Sbjct: 502 IAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRI 561

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
            +F   + +H +  +I   L  L   MK  GYVPD +  L D+E++EK   +  HSE++A
Sbjct: 562 HVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIA 621

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +AFG+I+ P   PI+I KNLR+CGDCH+  KFIS+I  REIIVRD++RFH FKDG CSC 
Sbjct: 622 LAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCK 681

Query: 703 DYW 705
           DYW
Sbjct: 682 DYW 684


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 362/608 (59%), Gaps = 9/608 (1%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           IS  C +G   EAL    EM + G  +      ++L  C     +  G  +H +++K   
Sbjct: 26  ISQLCSNGRLQEALL---EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRY 82

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
               ++   L+  Y K   +  A +V D+M E++VVSW ++I+ Y Q+     A   F  
Sbjct: 83  LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAE 142

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKL 279
           M ++  +P+  T  ++ +   + +     + +HG I++  W +   + +G++++DMYAK 
Sbjct: 143 MMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVK--WNYDSHIFVGSSLLDMYAKA 200

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I  A  +FE LP +DV+S   +I GYAQ GL  EA+E+FQ ++    + PN  TY S+
Sbjct: 201 GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQS-EGMRPNYVTYASL 259

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S +  L  G + H  V++  L F   +   L+DMY KCG +  A  LF  +P  ++
Sbjct: 260 LTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTA 319

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQR-YF 457
           + WNA++  +  HG G + L  FR M DE  V+PD +T +++L+ CSH  +   G   Y 
Sbjct: 320 ISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYD 379

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            M+  E+GIKP  +HYGC+VD+ GRAG +  A  FI+ MP +P A + G+LLGACR+H +
Sbjct: 380 GMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLS 439

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           +++G     RL E++ EN G YV++SN+YA+ G+WE V+ VR++   + + K PG S I+
Sbjct: 440 VDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQ 499

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
               +  F+  +RTHP+ E++  +++ ++ KMK  GYVPD S VL DV+E++KE +L  H
Sbjct: 500 HEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGH 559

Query: 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           SE+LA+ FG+I++    PI++FKNLR+C DCHN+ K  S++ ERE+ +RD NRFH    G
Sbjct: 560 SEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKG 619

Query: 698 ICSCGDYW 705
           ICSCGDYW
Sbjct: 620 ICSCGDYW 627



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 212/399 (53%), Gaps = 10/399 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           IS     GRL EA+          G    F+ +  +L AC   R L +G+++H  ++K  
Sbjct: 26  ISQLCSNGRLQEALLEMVML----GPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTR 81

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +    ++   LL  Y +      ARK+ D+MP ++  SW AMIS Y Q+G++ EAL +  
Sbjct: 82  YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFA 141

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           EM       +  T A++L  C R+  +  G  IH  IVK   + ++FV ++L++MYAK G
Sbjct: 142 EMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 201

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  +F+ + ERDVVS  +IIA Y Q      A   F  +Q  G++P+ +T  SL +
Sbjct: 202 QIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLT 261

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
            ++ L    + +  H  ++RR       ++ N+++DMY+K G ++ A  +F+ +P +  I
Sbjct: 262 ALSGLALLDHGKQAHCHVLRRELPFY-AVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAI 320

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SWN ++ GY+++GL  E +E+F++M +   + P+  T +++L   SH      G+ I+  
Sbjct: 321 SWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDG 380

Query: 359 VIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           ++     +  D     C+VDM G+ GRID+A     ++P
Sbjct: 381 MVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMP 419



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 176/353 (49%), Gaps = 9/353 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MIS Y + G  SEA+  F +   + G +P+ +TF  VL +C     L  GK+IH  ++K 
Sbjct: 123 MISRYSQTGHSSEALSVFAEMMRSDG-KPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++  +FV +SLL MY + G    AR++F+ +P RD  S  A+I+GY Q G   EAL++ 
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             ++ EG+  + +T AS+L   +    +  G   H ++++  L F   + N+LI+MY+K 
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G + +A R+FD M ER  +SWN+++  Y +          F  M+ +  ++PD +TL+++
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 237 TSIVAQLNDCRNSRSVH-GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
            S  +         S++ G +        D      +VDM  + G I+ A    + +P K
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
                   + G  +  L+ +  E   +     EI P N G YV +   Y+  G
Sbjct: 422 PTAGVLGSLLGACRVHLSVDIGEY--VGHRLIEIEPENAGNYVILSNLYASAG 472


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 378/712 (53%), Gaps = 72/712 (10%)

Query: 66  AASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           A SL+  Y   G    A   FD +P   RD+   NA+IS Y ++ +A  A+ +   +   
Sbjct: 91  ATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 124 G-VSMDPITVASILPVCARSDNILSGLLIHLY--IVKHGLEFNLFVSNNLINMYAK---F 177
           G +  D  +  ++L       NI       L   ++K G    L VSN L+ +Y K    
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 178 GMMRHALRVFDQMMERDVVSW-------------------------------NSIIAAYE 206
              R A +V D+M ++D ++W                               N++I+ Y 
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFMED 265
            S   + A   F  M    +  D  T  S+ S  A      + +SVHG I R +  F+ +
Sbjct: 271 HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPE 330

Query: 266 VI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               + NA+V +Y+K G I  A  +F+ +  KDV+SWNT+++GY ++    +A+EVF+ M
Sbjct: 331 AALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEM 390

Query: 324 EECNE------------------------------INPNQGTYVSILPAYSHVGALRQGI 353
              NE                              + P   TY   + A   +G+L+ G 
Sbjct: 391 PYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGK 450

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++H  +++            L+ MY +CG + +A  +F  +P   SV WNA+IS  G HG
Sbjct: 451 QLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHG 510

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +AL  F +M+ EG+ PD I+F+++LTAC+HSGLV EG +YF  M+ +FGI P   HY
Sbjct: 511 HGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHY 570

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             ++DL GRAG +G A + I+ MP  P  SIW A+L  CR  G+MELGA A+D+LF++  
Sbjct: 571 TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G Y+L+SN Y+  G+W     VR L RDRG+KK PG S IE  NKV +F  G+  HP
Sbjct: 631 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHP 690

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           +  K+Y  L  + A+M+ LGYVPD   VL D+E  +KEHIL +HSERLA+ FG++  PP 
Sbjct: 691 EAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPG 750

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + + + KNLR+C DCH    F+S+   REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 751 ATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 154/555 (27%), Positives = 247/555 (44%), Gaps = 91/555 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           +IS Y R    + AV  F     +  LRPD Y+F  +L A  +L +       ++ CSVL
Sbjct: 127 VISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVL 186

Query: 56  KLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRDSGSW--------------- 97
           K G    + V+ +L+ +Y +         ARK+ D+MP +D+ +W               
Sbjct: 187 KSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGA 246

Query: 98  ----------------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
                           NAMISGY  SG  VEA ++   M LE V +D  T  S+L  CA 
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 142 SDNILSGLLIHLYIVKHGLEF----NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           +     G  +H  I +    F     L V+N L+ +Y+K G +  A R+FD M  +DVVS
Sbjct: 307 AGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVS 366

Query: 198 WNSIIAAYEQSNDPITA-----------------------HG--------FFTTMQQAGI 226
           WN+I++ Y +S+    A                       HG         F  M+   +
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDV 426

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P   T     S   +L   ++ + +HG +++ G F      GNA++ MYA+ G +  A 
Sbjct: 427 KPCDYTYAGAISACGELGSLKHGKQLHGHLVQLG-FEGSNSAGNALITMYARCGAVKEAN 485

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F  +P  D +SWN +I+   Q+G   EA+E+F  M     I P++ +++++L A +H 
Sbjct: 486 LMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM-VAEGIYPDRISFLTVLTACNHS 544

Query: 347 GALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           G + +G +    + ++   F +       T L+D+ G+ GRI +A  L   +P   +   
Sbjct: 545 GLVDEGFQYFESMKRD---FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMM 460
           W AI+S  G    GD  L          + P H  T++ L    S +G   +  R   +M
Sbjct: 602 WEAILS--GCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLM 659

Query: 461 QEEFGIKPHLKHYGC 475
           ++  G+K   K  GC
Sbjct: 660 RDR-GVK---KEPGC 670



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 209/503 (41%), Gaps = 89/503 (17%)

Query: 150 LIHLYIVKHGLEF--NLF-------VSNNLINMYAKFGMMRHALRVFDQMME--RDVVSW 198
           LIHLY +   L     LF        + +L+  YA  G +  A+  FD + +  RD V  
Sbjct: 65  LIHLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLH 124

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLND--CRNSRSVHGF 255
           N++I+AY +++    A   F ++  +G ++PD  +  +L S    L +   R+   +   
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCS 184

Query: 256 IMRRG-------------WFM--------------------EDVIIGNAVVDMYAKLGII 282
           +++ G              +M                    +D +    +V  Y + G +
Sbjct: 185 VLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDV 244

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A +VFE + VK  + WN +I+GY  +G+  EA E+F+ M     +  ++ T+ S+L A
Sbjct: 245 GAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRM-VLERVPLDEFTFTSVLSA 303

Query: 343 YSHVGALRQGIKIHARVIKNCLCF----DVFVATCLVDMYGKCGRI-------------- 384
            ++ G    G  +H ++ +    F     + V   LV +Y KCG I              
Sbjct: 304 CANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKD 363

Query: 385 -----------------DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
                            D A+ +F ++P  + + W  ++S +   G  + AL  F +M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           E V+P   T+   ++AC   G +  G Q + H++Q   G +        ++ ++ R G +
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQ--LGFEGSNSAGNALITMYARCGAV 481

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSN 544
             A+     MP   D+  W A++ A   HG+        DR+    +  + + +  +++ 
Sbjct: 482 KEANLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTA 540

Query: 545 IYANVGKWEGVDEVRSLARDRGL 567
              +    EG     S+ RD G+
Sbjct: 541 CNHSGLVDEGFQYFESMKRDFGI 563


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 359/577 (62%), Gaps = 4/577 (0%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           T   +L  CA S  +L G  +H  +VK G   +  ++N LI MY K G +  A  VFDQ+
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 191 MER--DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            E+  DV+SWN II AY Q+     A   F TM   G+  + +TL++     A L     
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R VH   + +     D ++G ++V+M+ K   +++A AVF+ LP K++++WN ++  Y+
Sbjct: 146 GRIVHAIAVDK-RLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYS 204

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           QN    +AI+VF+ M+    + P+  T+++I+ A + + A  +G  +H  +  + +  DV
Sbjct: 205 QNWQCKKAIQVFRFMD-LEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDV 263

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            + T ++  YGKCGR+D+A ++F  + + ++V W+AI++ +  +G   +A+  + +M+  
Sbjct: 264 ALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQG 323

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+  + ITF+ LL ACSH+G   +G  YF  M  +FG+ P  +HY  ++DL GR+G L +
Sbjct: 324 GLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQL 383

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           + + I +MP  PD+S W ALLGACR+HG+++ GA  ++ ++E+D E+ G Y+L+SN+Y++
Sbjct: 384 SEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSS 443

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
            G+ +     R   R RG+ K PG SSIEV ++V  F    + HP+  +I+ E+  L A+
Sbjct: 444 TGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKAR 503

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           +K  GYV D   VL+DVEE+EKE +L  HSERLAIAFG+IS+PP + + I KNLRVC DC
Sbjct: 504 VKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDC 563

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H   K IS++  R+I+VRD+ RFHHF++G CSCGDYW
Sbjct: 564 HAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 224/441 (50%), Gaps = 10/441 (2%)

Query: 28  RPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           R +  T+  +LK C   + L++GK++H  ++K G+  D  +A  L+ MY + G    AR 
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 85  LFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           +FD +  +++   SWN +I  Y Q+G   EAL +   M LEGV  + +T+ + +  CA  
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +   G ++H   V   LE +  V  +L+NM+ K   +  A  VFD +  +++V+WN+++
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y Q+     A   F  M   G+QPD +T +++    A L      R VH  I   G  
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIP 260

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           M DV +G AV+  Y K G +++A A+F+ L  K+ ++W+ ++  YAQNG  +EAIE++  
Sbjct: 261 M-DVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHE 319

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC-LVDMYGKC 381
           M +   +  N  T++ +L A SH G    G+     +I++     VF     L+D+ G+ 
Sbjct: 320 MVQGG-LEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRS 378

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           G++  +  L   +P    S  W A++    +HG  D+      +++ E    D   ++ L
Sbjct: 379 GQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGAR-IAELIYELDPEDSGPYILL 437

Query: 441 LTACSHSGLVSEGQRYFHMMQ 461
               S +G + E +R    M+
Sbjct: 438 SNLYSSTGRMDEARRTRKAMR 458



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 171/359 (47%), Gaps = 13/359 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +I  Y + G   EA+  F    L  G+  +  T    + AC +L    +G+ +H   +  
Sbjct: 98  IIGAYTQNGLGKEALHLFKTMDL-EGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDK 156

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E D  V  SL++M+ +    + AR +FD +P ++  +WN M++ Y Q+    +A+ + 
Sbjct: 157 RLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVF 216

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M LEGV  D +T  +I+  CA       G ++H  I   G+  ++ +   +++ Y K 
Sbjct: 217 RFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKC 276

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + +A  +FD + +++ V+W++I+AAY Q+     A   +  M Q G++ + +T + L 
Sbjct: 277 GRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGL- 335

Query: 238 SIVAQLNDCRNSRSVHGFI-MRRGWFMEDVIIGNA-VVDMYAKLGIINSACAVFEGLPVK 295
            + A  +  R+   V  F+ M R + +  V      ++D+  + G +  +  +   +P +
Sbjct: 336 -LFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYE 394

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQG 352
            D  +W  L+     +G       + +++    E++P + G Y+ +   YS  G + + 
Sbjct: 395 PDSSAWLALLGACRMHGDVDRGARIAELI---YELDPEDSGPYILLSNLYSSTGRMDEA 450


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/581 (39%), Positives = 363/581 (62%), Gaps = 7/581 (1%)

Query: 128 DPIT-VASILPVCARSDNILSGLLIHLYIVKHGLEFN-LFVSNNLI-NMYAKFGMMRHAL 184
           +P+T   S+L  CA S + L    IH + ++HG+  N   +  +LI  + +    M +A 
Sbjct: 15  NPLTKCISLLQFCASSKHKLKQ--IHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAY 72

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
            VF  +   +V +WN+II  Y +S++P  A  F+  M  + ++PD  T   L   +++  
Sbjct: 73  NVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSL 132

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           + R   ++H   +R G F   V + N+++ +YA  G   SA  VFE +  +D+++WN++I
Sbjct: 133 NVREGEAIHSVTIRNG-FESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMI 191

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            G+A NG  +EA+ +F+ M     + P+  T VS+L A + +GAL  G ++H  ++K  L
Sbjct: 192 NGFALNGRPNEALTLFREMS-VEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGL 250

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             +  V   L+D+Y KCG I +A  +F ++   ++V W ++I    ++G G++AL  F++
Sbjct: 251 SKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKE 310

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M  +G+ P  ITFV +L ACSH G++ EG  YF  M+EE GI P ++HYGCMVDL  RAG
Sbjct: 311 MEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAG 370

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            +  A+ +IQNMPV+P+A IW  LLGAC IHG++ LG +A   L  ++ ++ G YVL+SN
Sbjct: 371 LVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSN 430

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           +YA+  +W  V  +R      G+KKTPG+S +E+ N+V  F  G+R+HP+ + +Y  L  
Sbjct: 431 LYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEK 490

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
           +T  +K  GYVP  + VL D+EE+EKE  L+ HSE++AIAF ++++PP +PI++ KNLRV
Sbjct: 491 ITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRV 550

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           C DCH   K I++I +REI++RD +RFHHF+ G CSC DYW
Sbjct: 551 CADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 172/321 (53%), Gaps = 4/321 (1%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           +WN +I GY +S N   A     +M +  V  D  T   +L   ++S N+  G  IH   
Sbjct: 85  TWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVT 144

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +++G E  +FV N+L+++YA  G    A +VF+ M ERD+V+WNS+I  +  +  P  A 
Sbjct: 145 IRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEAL 204

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M   G++PD  T+VSL S  A+L      R VH ++++ G   ++  + N+++D+
Sbjct: 205 TLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVG-LSKNSHVTNSLLDL 263

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAK G I  A  VF  +  ++ +SW +LI G A NG   EA+E+F+ M E   + P++ T
Sbjct: 264 YAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEM-EGQGLVPSEIT 322

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +V +L A SH G L +G +   R+ + C +   +    C+VD+  + G +  A      +
Sbjct: 323 FVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNM 382

Query: 395 P-RSSSVPWNAIISCHGIHGQ 414
           P + ++V W  ++    IHG 
Sbjct: 383 PVQPNAVIWRTLLGACTIHGH 403



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 16/297 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FY+  + S + PD +T+P +LKA     N+ +G+ IH   ++ GFE  VFV  SLLH+Y 
Sbjct: 105 FYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYA 164

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G    A K+F+ M  RD  +WN+MI+G+  +G   EAL +  EM +EGV  D  TV S
Sbjct: 165 ACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVS 224

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   A    +  G  +H+Y++K GL  N  V+N+L+++YAK G +R A RVF +M ER+
Sbjct: 225 LLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERN 284

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV-H 253
            VSW S+I     +     A   F  M+  G+ P  +T V +      L  C +   +  
Sbjct: 285 AVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGV------LYACSHCGMLDE 338

Query: 254 GFIMRRGWFMEDVIIGN-----AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
           GF   R    E  II        +VD+ ++ G++  A    + +PV+ + + W TL+
Sbjct: 339 GFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLL 395


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/686 (36%), Positives = 380/686 (55%), Gaps = 28/686 (4%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G ++H ++LKLGF  D  +  +L+ MY + G   +A ++F  MP R+  SW A++ G+ +
Sbjct: 23  GAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLR 82

Query: 107 SGNAVEALDILDEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            G+A E L +L  MR L  V+ +  T+++ L  C    ++ +G+ IH   V+ G E +  
Sbjct: 83  HGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHV 142

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-- 223
           V+N+L+ +Y+K G +  A RVFD  + R++V+WN++I+ Y  +     +   F  MQQ  
Sbjct: 143 VANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRR 202

Query: 224 ---AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG-WFMEDVIIGNAVVDMYAKL 279
                 QPD  T  SL      L   R    VH  ++ RG     + I+  A++DMY K 
Sbjct: 203 QEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKC 262

Query: 280 G-IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
             ++  A  VF  L  K+ I W T+I G+AQ G   EA+E+F        +  +     S
Sbjct: 263 RCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSG-VRADGHVLSS 321

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           ++  ++    + QG ++H   +K     DV VA  L+DMY KCG  D+A   F +VP  +
Sbjct: 322 VVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARN 381

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V W A+I+  G HG G +A++ F +M  EGV PD + +++LL+ACSHSGLV E +RYF 
Sbjct: 382 VVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFS 441

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            ++ +  ++P  +HY CMVDL GRAG L  A + +  MP+ P   +W  LL ACR+H N+
Sbjct: 442 AIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNV 501

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            +G  A + L  +D +N   YV++SNI+A  G W     VR   R RGL+K  G S +EV
Sbjct: 502 TVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEV 561

Query: 579 NNKVDIFY-TGNRTHPKYEKIYDELRNLTAKMKS-LGYVPD-----KSFVLQDVEEDEKE 631
             +   FY  G+ +HP+   I   LR++   M+  LGY P          L DV+E+ + 
Sbjct: 562 GKEAHFFYGGGDDSHPRAADICCVLRDVERTMRERLGYSPGSSSSSSEAALHDVDEESRA 621

Query: 632 HILTSHSERLAIAF------------GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
             L +HSERLA+              G+  +  K  I+++KNLRVCGDCH + K +S + 
Sbjct: 622 ESLRAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVV 681

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            R ++VRD+NRFH F+DG+CSC DYW
Sbjct: 682 GRVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 205/430 (47%), Gaps = 33/430 (7%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEW 61
           ++R G   E +         S + P+ +T    LKAC    ++  G  IH + ++ GFE 
Sbjct: 80  FLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEG 139

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
              VA SL+ +Y + G    AR++FD    R+  +WNAMISGY  +G+  ++L +  EM+
Sbjct: 140 HHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQ 199

Query: 122 L-----EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF--NLFVSNNLINMY 174
                 E    D  T AS+L  C        G  +H  +V  G+    N  ++  L++MY
Sbjct: 200 QRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMY 259

Query: 175 AKFG-MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
            K   ++  A++VF+++ +++ + W ++I  + Q      A   F     +G++ D   L
Sbjct: 260 VKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVL 319

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+  + A        R VH + ++    + DV + N+++DMY K G+ + A   F  +P
Sbjct: 320 SSVVGVFADFALVEQGRQVHCYTVKTPAGL-DVSVANSLIDMYHKCGLTDEAARRFREVP 378

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG------ 347
            ++V+SW  +I G  ++G   EAI +F+ M     + P++  Y+++L A SH G      
Sbjct: 379 ARNVVSWTAMINGLGKHGHGQEAIHMFEEM-RAEGVEPDEVAYLALLSACSHSGLVEECR 437

Query: 348 ----ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-W 402
               A+R   ++  R              C+VD+ G+ G + +A  L   +P + +V  W
Sbjct: 438 RYFSAIRHDRRLRPRAEHY---------ACMVDLLGRAGELSEAKDLVATMPMAPTVGVW 488

Query: 403 NAIISCHGIH 412
             ++S   +H
Sbjct: 489 QTLLSACRVH 498



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 210/423 (49%), Gaps = 15/423 (3%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L   A S  I  G  +H  ++K G   +  + NNLI+MYAK G +R A  VF  M 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           ER+VVSW +++  + +  D          M+  + + P+  TL +       + D     
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +HG  +R G F    ++ N++V +Y+K G I  A  VF+G   +++++WN +I+GYA  
Sbjct: 127 WIHGACVRAG-FEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHA 185

Query: 311 GLASEAIEVFQMM----EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL-- 364
           G   +++ VF+ M    +E  +  P++ T+ S+L A   +GA R+G ++HA ++   +  
Sbjct: 186 GHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVST 245

Query: 365 CFDVFVATCLVDMYGKCG-RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
             +  +A  L+DMY KC   +  AM +F ++ + +++ W  +I  H   GQ  +A+  F 
Sbjct: 246 ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFG 305

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
           +    GVR D     S++   +   LV +G Q + + ++   G+   + +   ++D++ +
Sbjct: 306 RFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVAN--SLIDMYHK 363

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEVDSENVGYYV 540
            G    A    + +P R   S W A++     HG+ +  +      R   V+ + V Y  
Sbjct: 364 CGLTDEAARRFREVPARNVVS-WTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLA 422

Query: 541 LMS 543
           L+S
Sbjct: 423 LLS 425


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/578 (40%), Positives = 361/578 (62%), Gaps = 13/578 (2%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGL-----EFNLFVSNNLINMYAKFGMMRHALRVFD 188
           S++ +C  S + L    IH + ++HG+     +FN  +   L+++ A    M  A ++F+
Sbjct: 39  SLVQLCGSSQSKLKQ--IHAFSIRHGVPPQNPDFNKHLIFALVSLSAP---MSFAAQIFN 93

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCR 247
           Q+   ++ +WN++I  + +S +P  A   F+ M  A  I PD  T   L   VA+L D  
Sbjct: 94  QIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H  ++R G F     + N++V MY+  G   SA  VFE +  +D ++WN++I G+
Sbjct: 154 LGEGIHSVVVRNG-FDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGF 212

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           A NG+ +EA+ +++ M     + P+  T VS+L A   +GAL  G ++H  ++K  L  +
Sbjct: 213 ALNGMPNEALTLYREMGS-EGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
              +  L+D+Y KCG   DA  +F ++   S V W ++I    ++G G++AL  F ++  
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           +G++P  ITFV +L ACSH G++ EG  YF  M+EE+GI P ++H+GCMVDL  RAG +G
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A+++I+NMPV P+A IW  LLGAC IHG++ELG VA   +  ++  + G +VL+SN+YA
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
           +  +W  V  VR +   +G+KKTPG+S +E+ N+V  F  G+R+HP+ E+ Y  L  +T 
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            +K  GYVP    VL D+EE+EKE  L+ H+E++AIAF ++++PP +PI+I KNLRVC D
Sbjct: 512 LLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCAD 571

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH   K IS++ EREIIVRD +RFHHFKDG CSC DYW
Sbjct: 572 CHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 158/315 (50%), Gaps = 18/315 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  +      S AV+ F Q    S + PD +TFP + KA   L+D   G+ IH  V++ 
Sbjct: 106 MIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN 165

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+   FV  SL+HMY  FG A  A ++F+ M  RD  +WN++I+G+  +G   EAL + 
Sbjct: 166 GFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLY 225

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  EGV  D  T+ S+L  C     +  G  +H+Y+VK GL  N   SN L+++Y+K 
Sbjct: 226 REMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKC 285

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  R A +VFD+M ER VVSW S+I     +     A   F  +++ G++P  +T V + 
Sbjct: 286 GNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVL 345

Query: 238 SIVAQ-------LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
              +         N  R  +  +G + R       +     +VD+  + G +  A     
Sbjct: 346 YACSHCGMLDEGFNYFRRMKEEYGILPR-------IEHHGCMVDLLCRAGKVGDAYDYIR 398

Query: 291 GLPV-KDVISWNTLI 304
            +PV  + + W TL+
Sbjct: 399 NMPVPPNAVIWRTLL 413


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/674 (36%), Positives = 382/674 (56%), Gaps = 37/674 (5%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-V 125
           AS+L  + R    + AR +FD+ P R +  W   ISG  + G   + +    EM  EG  
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           + +   +A+++  CA   ++ SG  +H +++++G+  ++ + N +++MYAK G    A R
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARR 168

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF-------TT------------------ 220
           VF  M ERD VSWN  I A  QS D + +   F       TT                  
Sbjct: 169 VFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADA 228

Query: 221 ------MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
                 M QAG+  +  T  +   +   L      R +HG ++       D  + ++++D
Sbjct: 229 LSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAA-LEGDAFVRSSLMD 287

Query: 275 MYAKLGIINSACAVFEGLP--VKDV-ISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           MY K G++ +A +VF+      +D+  +W+T++ GY QNG   EA+++F+ M     +  
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLR-EGVAA 346

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           ++ T  S+  A ++VG + QG ++H  V K     D  +A+ +VDMY KCG ++DA S+F
Sbjct: 347 DRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIF 406

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            +    +   W +++  +  HGQG  A+  F +M  E + P+ IT V +L+ACSH GLVS
Sbjct: 407 DRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVS 466

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG+ YF  MQEE+GI P ++HY C+VDL+GR+G L  A NFI+   +  +A +W  LL A
Sbjct: 467 EGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSA 526

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CR+H + E   +AS++L +++  + G YV++SNIYA   KW    E+R   ++R ++K P
Sbjct: 527 CRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQP 586

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S I + N V  F  G+ +HP+  +IY  L  L  ++K +GY      V+ DVE++++E
Sbjct: 587 GRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRE 646

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
             L  HSE+LAIAFGIIS+P  +P++IFKNLRVC DCH   K+IS  T REI+VRD  RF
Sbjct: 647 TALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRF 706

Query: 692 HHFKDGICSCGDYW 705
           HHFKD  CSC D+W
Sbjct: 707 HHFKDASCSCEDFW 720



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 220/457 (48%), Gaps = 43/457 (9%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG 58
           IS   R GR ++ +  F +        P+ +    V++ C  + D   GK++H  +L+ G
Sbjct: 83  ISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNG 142

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              DV +  ++L MY + G    AR++F  M  RD+ SWN  I    QSG+ + ++ + D
Sbjct: 143 VHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFD 202

Query: 119 EMRLEGVSMDPITVASILPVCARSDN-----------------------ILSGLL----- 150
           E  L   +     ++ ++     +D                        +L+G+L     
Sbjct: 203 ESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDL 262

Query: 151 ---IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDV-VSWNSIIAA 204
              +H  ++   LE + FV ++L++MY K G++  A  VFD    + RD+  +W++++A 
Sbjct: 263 GRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAG 322

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y Q+     A   F  M + G+  D  TL S+ +  A +      R VHG +  + W+  
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCV-EKLWYKL 381

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D  + +A+VDMYAK G +  A ++F+    K++  W +++  YA +G    AIE+F+ M 
Sbjct: 382 DAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERM- 440

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCG 382
              ++ PN+ T V +L A SHVG + +G +++ + ++    +   +    C+VD+YG+ G
Sbjct: 441 TAEKMTPNEITLVGVLSACSHVGLVSEG-ELYFKQMQEEYGIVPSIEHYNCIVDLYGRSG 499

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
            +D A +   +      ++ W  ++S   +H   + A
Sbjct: 500 LLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYA 536



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 12/212 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           M++ YV+ GR  EA+D F +  L  G+  D +T   V  AC N+     G+++H  V KL
Sbjct: 319 MVAGYVQNGREEEALDLFRRM-LREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKL 377

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ D  +A++++ MY + G    AR +FD    ++   W +M+  Y   G    A+++ 
Sbjct: 378 WYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS----NNLINM 173
           + M  E ++ + IT+  +L  C+    +  G    LY  +   E+ +  S    N ++++
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACSHVGLVSEG---ELYFKQMQEEYGIVPSIEHYNCIVDL 494

Query: 174 YAKFGMMRHALRVFDQ-MMERDVVSWNSIIAA 204
           Y + G++  A    ++  +  + + W ++++A
Sbjct: 495 YGRSGLLDKAKNFIEENNINHEAIVWKTLLSA 526


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 356/612 (58%), Gaps = 3/612 (0%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S +  A+   +  S  +   L  LD +    ++  P    SI+  CA+  N+     IH 
Sbjct: 25  SAAHRAVPISFPSSPASSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHA 84

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           ++ +  L  + F+ N+LI+MY K G +  A  VFD+M  RDVVSW  +IA Y Q+  P  
Sbjct: 85  HLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAE 144

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A G    M +A  +P+  T  SL         C     +H   ++  W  EDV +G+A++
Sbjct: 145 AIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNW-DEDVYVGSALL 203

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYA+   ++ A  VF+ L  K+ +SWN LI G+A+       +  F  M+  N      
Sbjct: 204 DMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR-NGFGATH 262

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            TY S+  A++ +GAL QG  +HA +IK+      FV   ++ MY K G + DA  +F +
Sbjct: 263 FTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDR 322

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           + +   V WN +++    +G G +A+  F ++   G++ + ITF+S+LTACSH GLV EG
Sbjct: 323 MDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG 382

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
           + YF MM++ + ++P + HY   VDL GRAG L  A  F+  MP+ P A++WGALLGACR
Sbjct: 383 KHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACR 441

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           +H N ++G  A+D +FE+D ++ G  VL+ NIYA+ GKW     VR + +  G+KK P  
Sbjct: 442 MHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPAC 501

Query: 574 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI 633
           S +++ N V +F   + THPK   IY     +  ++K  GYVP+ + VL  + E E+E  
Sbjct: 502 SWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETK 561

Query: 634 LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHH 693
           L  HSE++A+AF +I+ P  + I+I KN+R+CGDCH+  K++S++ +REI+VRD+NRFHH
Sbjct: 562 LKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHH 621

Query: 694 FKDGICSCGDYW 705
           F +G CSCGDYW
Sbjct: 622 FSEGSCSCGDYW 633



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 202/390 (51%), Gaps = 6/390 (1%)

Query: 27  LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L P    +  ++ AC   +NL   + IH  + +     D F+  SL+HMYC+ G  + AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD MP RD  SW  +I+GY Q+    EA+ +L +M       +  T  S+L       
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
               G  +H   VK+  + +++V + L++MYA+   M  A+ VFD+++ ++ VSWN++IA
Sbjct: 176 GCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIA 235

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            + +  D  T    F  MQ+ G      T  S+ S  A++      R VH  +++ G  +
Sbjct: 236 GFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKL 295

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               +GN ++ MYAK G +  A  VF+ +  +D+++WNT++T  AQ GL  EA+  F+ +
Sbjct: 296 T-AFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 354

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +C  I  NQ T++S+L A SH G +++G      +    +  ++      VD+ G+ G 
Sbjct: 355 RKCG-IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGL 413

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           + +A+   +++P   ++  W A++    +H
Sbjct: 414 LKEALIFVFKMPMEPTAAVWGALLGACRMH 443


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/471 (46%), Positives = 328/471 (69%), Gaps = 5/471 (1%)

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI--INSACAVFEGLPVK 295
           S  A++ D   + S+H  I + G F  +  + N ++D YAK G   +  A  VF+ +  +
Sbjct: 206 SASARVPDRGVTASLHALIAKIG-FERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-R 263

Query: 296 DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           DV+SWN++I  YAQNG+++EAI ++ +M+     I  N     ++L A +H GA++ G +
Sbjct: 264 DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR 323

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH +V++  L  +V+V T +VDMY KCGR++ A   F ++   + + W+A+I+ +G+HG+
Sbjct: 324 IHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGR 383

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +AL  F +M   G+RP++ITF+S+L ACSH+GL+ EG+ +++ M++EFGI+  ++HYG
Sbjct: 384 GQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYG 443

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAG L  A++ I+ M V+PDA+IWGALL ACRIH N+EL  ++  RLFE+D+ 
Sbjct: 444 CMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDAS 503

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           N GYYVL+SNIYA    W+ V+ +R L + R ++K PG+SS E+  K+ +FY G+++HP+
Sbjct: 504 NSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQ 563

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
           + +IY  L  L  +M+  GYVP+   VL D++E+EKE  L  HSE+LA+AF +++S P+S
Sbjct: 564 HIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRS 623

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I I KNLRVC DCH   KFI++ITEREII+RD  RFHHFKDG+CSC DYW
Sbjct: 624 VIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 143/262 (54%), Gaps = 6/262 (2%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLAN--VARKLFDDMPVRDSGSWNAMISGYCQS 107
           +H  + K+GFE +  V  ++L  Y + G  +  VARK+FD M  RD  SWN+MI+ Y Q+
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 278

Query: 108 GNAVEALDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           G + EA+ +  +M     G+  + + ++++L  CA +  I +G  IH  +V+ GLE N++
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVY 338

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  ++++MY+K G +  A R F ++ E++++SW+++I  Y        A   FT M+++G
Sbjct: 339 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG 398

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+ +T +S+ +  +        R  +  + +       V     +VD+  + G ++ A
Sbjct: 399 LRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 458

Query: 286 CAVFEGLPVK-DVISWNTLITG 306
            ++ + + VK D   W  L++ 
Sbjct: 459 YSLIKEMKVKPDAAIWGALLSA 480



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQ-FTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI++Y + G  +EA+  + +   +  G++ +      VL AC +   +  GK+IH  V++
Sbjct: 271 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR 330

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G E +V+V  S++ MY + G   +A + F  +  ++  SW+AMI+GY   G   EAL+I
Sbjct: 331 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 390

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYA 175
             EM+  G+  + IT  S+L  C+ +  +  G   +  + +  G+E  +     ++++  
Sbjct: 391 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLG 450

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +  +M ++ D   W ++++A
Sbjct: 451 RAGCLDEAYSLIKEMKVKPDAAIWGALLSA 480



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 103/216 (47%), Gaps = 8/216 (3%)

Query: 306 GYAQNGLASEAIEVFQMMEECNEIN-PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           GY +N L   ++E+F+ M   +  +  ++   +    A + V        +HA + K   
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 365 CFDVFVATCLVDMYGKCGR--IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
             +  V   ++D Y K G   ++ A  +F  + R   V WN++I+ +  +G   +A+  +
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 423 RQMLD--EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            +ML+   G++ + +   ++L AC+H+G +  G+R  H      G++ ++     +VD++
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR-IHNQVVRMGLEENVYVGTSIVDMY 347

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            + G + MA    + +  +   S W A++    +HG
Sbjct: 348 SKCGRVEMASRAFRKIKEKNILS-WSAMITGYGMHG 382


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/573 (40%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            S+L  C  S  +  G  +H      G+ +N  ++  L+++YA    + +A  +FD++ +
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPK 110

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +++  WN +I  Y  +     A   +  M   G++PD  TL  +    + L+     RS+
Sbjct: 111 QNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSI 170

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H ++++ GW   D+ +G A++DMYAK G +  A  VF+ + V+D + WN+++  YAQNG 
Sbjct: 171 HEYVIKSGW-ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E+I + + M   N + P + T V+++ + + V  L  G +IH    ++    +  V T
Sbjct: 230 PDESISLCREMA-ANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKT 288

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+DMY KCG +  A++LF ++     V WNAII+ + +HG    AL+ F +M  E  RP
Sbjct: 289 ALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RP 347

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           DHITFV +L ACS   L+ EG+  +++M  ++GI P ++HY CM+DL G  G L  A++ 
Sbjct: 348 DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDL 407

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I+NM V+PD+ +WGALL +C+IHGN+EL  +A ++L E++ ++ G YV+++N+YA  GKW
Sbjct: 408 IRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKW 467

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           EGV+++R +  D+ +KK    S IEV NKV  F  G+ +H   + IY EL+ L   M   
Sbjct: 468 EGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEA 527

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GY PD   V  DVEEDEK  ++ SHSERLAIAFG+IS+ P + + I KNLR+C DCH   
Sbjct: 528 GYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAI 587

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KFIS+I EREI VRD NR+H FK G+CSCGD+W
Sbjct: 588 KFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/407 (33%), Positives = 220/407 (54%), Gaps = 10/407 (2%)

Query: 32  YTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           Y +  +L++C   + L  GK++H     LG  ++  +A  L+H+Y        AR LFD 
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           +P ++   WN +I GY  +G    A+ +  +M   G+  D  T+  +L  C+    I  G
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH Y++K G E +LFV   LI+MYAK G +  A RVFD+++ RD V WNS++AAY Q+
Sbjct: 168 RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQN 227

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
             P  +      M   G++P   TLV++ S  A +      R +HGF  R G F  +  +
Sbjct: 228 GHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHG-FQSNDKV 286

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
             A++DMYAK G +  A A+FE L  K V+SWN +ITGYA +GLA  A+++F  M +  E
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRK--E 344

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDA 387
             P+  T+V +L A S    L +G  ++  ++++  +   V   TC++D+ G CG++D+A
Sbjct: 345 DRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEA 404

Query: 388 MSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
             L   +  +  S  W A+++   IHG  + A     ++++  + PD
Sbjct: 405 YDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIE--LEPD 449



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 184/360 (51%), Gaps = 18/360 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  GLRPD +T P VLKAC  L    +G+ IH  V+K G+E D+FV A+L+ MY 
Sbjct: 135 LYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYA 194

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    A ++FD + VRD+  WN+M++ Y Q+G+  E++ +  EM   GV     T+ +
Sbjct: 195 KCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVT 254

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++   A    +  G  IH +  +HG + N  V   LI+MYAK G ++ AL +F+++ E+ 
Sbjct: 255 VISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKR 314

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VVSWN+II  Y      + A   F  M++   +PD +T V + +  ++       R+++ 
Sbjct: 315 VVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYN 373

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLA 313
            ++R       V     ++D+    G ++ A  +   + VK D   W  L+     +G  
Sbjct: 374 LMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHG-- 431

Query: 314 SEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVG------ALRQGIKIHARVIKNCLC 365
              +E+ ++ +E+  E+ P + G YV +   Y+  G       LRQ + I  R+ KN  C
Sbjct: 432 --NVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQ-VMIDKRIKKNIAC 488



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 331 PNQGT----YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           P Q T    Y S+L +     AL  G ++HA+     + ++  +AT LV +Y     + +
Sbjct: 41  PPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLN 100

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A +LF ++P+ +   WN +I  +  +G  D A+  + +MLD G+RPD+ T   +L ACS 
Sbjct: 101 ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSA 160

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
              + EG R  H    + G +  L     ++D++ + G +  A      + VR DA +W 
Sbjct: 161 LSAIGEG-RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWN 218

Query: 507 ALLGACRIHGN 517
           ++L A   +G+
Sbjct: 219 SMLAAYAQNGH 229


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/714 (37%), Positives = 408/714 (57%), Gaps = 15/714 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y +     +A+  FY   L  G++ +  TF  VL AC  L D +     ++KL  E
Sbjct: 172 MITAYAQQDHHEQAIQVFYAMLL-EGVKAERITFIGVLDACSKLKDLEV--AKLVKLCVE 228

Query: 61  -------WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
                   D   A +L++ Y   G    A + F    + +     AMI+ Y Q     EA
Sbjct: 229 EREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRL-ELILATAMITQYTQRERWDEA 287

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L++   M LEGV +D I   ++L  C+    +  G +IH ++ +   + ++   N LINM
Sbjct: 288 LELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINM 347

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A+ VF  M  RDV+SWN+IIAA+ Q +    A      MQ  G++ D ++ 
Sbjct: 348 YGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISF 407

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
           V+   + A        R +H +I+  G    DV++ NA++DMY      + A  VF  + 
Sbjct: 408 VNALPLCAASEALAKGRMIHSWIVESG-IKADVMLDNAILDMYGSCKSTDDASRVFRAMK 466

Query: 294 VKDVISWNTLITGYA-QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
            +D +SWN +IT YA Q  L+SEA+ +FQ M+  +   P+  ++V+ L A +   +L +G
Sbjct: 467 ARDQVSWNAMITAYAAQPRLSSEALLLFQQMQ-LHGFMPDVISFVAALSACAAQASLAEG 525

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H R+ +  L  ++ VA  +++MY K G +  A  +F ++P    + WN +IS    H
Sbjct: 526 KLLHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQH 585

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPHLK 471
           G  D+ L FFR+M  EG  P+ +TFVS+++ACSH GLV +G + F  +  +F  I P  +
Sbjct: 586 GHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAE 645

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CMVDL  RAG L  A  FI   P++PD  I   +LGA ++H ++E    +++ L E+
Sbjct: 646 HYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMEL 705

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
             +    YV++SN+Y  VGK +   ++R L  ++ ++K P +SSI V  +V  F+TG+ T
Sbjct: 706 TPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTT 765

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           + +  +I +EL  L+ +M   GY PD + +L DV +++K+ +L+ HSE+LAIAFG+IS+ 
Sbjct: 766 NARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTA 825

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P + ++I KNLRVCGDCH  TKFIS+IT REI+VRDS+RFHHF +G CSCGDYW
Sbjct: 826 PGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 261/526 (49%), Gaps = 13/526 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLK 56
           +I  + + G   +A+  F    L  G+ P    F  VL AC      L +G++IH  +  
Sbjct: 70  LIRAHGQIGDSEQALHLFRSMQL-EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRG 128

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E D +V+ +LLHMY +      ARK+FD +  +    WNAMI+ Y Q  +  +A+ +
Sbjct: 129 TAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQV 188

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV--KHGLEFNLFVSNNLINMY 174
              M LEGV  + IT   +L  C++  ++    L+ L +   +H    +   +  L+N Y
Sbjct: 189 FYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFY 248

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
              G +  A R F +    +++   ++I  Y Q      A   F  M   G++ D +  +
Sbjct: 249 GSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACM 307

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ +  +        R +HGF MR   F   V  GNA+++MY K G +  A  VF  +  
Sbjct: 308 AVLNACSGPRGLEEGRMIHGF-MREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH 366

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +DVISWNT+I  + Q+    EA+ +  +M + + +  ++ ++V+ LP  +   AL +G  
Sbjct: 367 RDVISWNTIIAAHGQHSQHPEALHLLHLM-QLDGVKADKISFVNALPLCAASEALAKGRM 425

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH+ ++++ +  DV +   ++DMYG C   DDA  +F  +     V WNA+I+ +    +
Sbjct: 426 IHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPR 485

Query: 415 -GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
              +AL  F+QM   G  PD I+FV+ L+AC+    ++EG +  H    E G++ ++   
Sbjct: 486 LSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGLESNMTVA 544

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +++++ ++G L +A      MP+ PD   W  ++ A   HG+ +
Sbjct: 545 NAVLNMYAKSGSLVLARKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 232/477 (48%), Gaps = 6/477 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           V+   R+L  GK++H  + K   +   F+   L+ MY   G    A+  FD MPV+D+ +
Sbjct: 7   VVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALT 66

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYI 155
           W  +I  + Q G++ +AL +   M+LEGV+       ++L  C+    +L  G  IH  +
Sbjct: 67  WARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVL 126

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
               +E + +VS  L++MY K   +  A +VFD +  + VV WN++I AY Q +    A 
Sbjct: 127 RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAI 186

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVD 274
             F  M   G++ + +T + +    ++L D   ++ V   +  R    + D     A+V+
Sbjct: 187 QVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVN 246

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            Y   G +  A   F    ++ +++   +IT Y Q     EA+E+F++M     +  ++ 
Sbjct: 247 FYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVM-LLEGVKLDRI 304

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
             +++L A S    L +G  IH  + +      V     L++MYGKCG +++A+ +F  +
Sbjct: 305 ACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSM 364

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                + WN II+ HG H Q  +AL+    M  +GV+ D I+FV+ L  C+ S  +++G 
Sbjct: 365 QHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKG- 423

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           R  H    E GIK  +     ++D++G       A    + M  R   S W A++ A
Sbjct: 424 RMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVS-WNAMITA 479



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 195/420 (46%), Gaps = 30/420 (7%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A +L V A S ++  G  +H  I K  ++   F+ + L+ MY   G +  A   FD+M  
Sbjct: 2   ADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPV 61

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRS 251
           +D ++W  +I A+ Q  D   A   F +MQ  G+ P     V+ L +  A        R 
Sbjct: 62  QDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRR 121

Query: 252 VHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           +HG +  RG  ME D  +   ++ MY K   +  A  VF+G+  K V+ WN +IT YAQ 
Sbjct: 122 IHGVL--RGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQ 179

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL------ 364
               +AI+VF  M     +   + T++ +L A S +  L       A+++K C+      
Sbjct: 180 DHHEQAIQVFYAM-LLEGVKAERITFIGVLDACSKLKDLEV-----AKLVKLCVEEREHD 233

Query: 365 -CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D   AT LV+ YG CG ++ A   F +  R   +   A+I+ +    + D+AL  F+
Sbjct: 234 HLHDSSFATALVNFYGSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFK 292

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            ML EGV+ D I  +++L ACS    + EG R  H    E     H+     +++++G+ 
Sbjct: 293 VMLLEGVKLDRIACMAVLNACSGPRGLEEG-RMIHGFMREIRFDRHVNAGNALINMYGKC 351

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN----------MELGAVASDRLFEVDS 533
           G L  A    ++M  R D   W  ++ A   H            M+L  V +D++  V++
Sbjct: 352 GSLEEAVEVFRSMQHR-DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNA 410



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           Y  +L   +   +L  G ++HAR+ K+ +    F+   LV MY  CG + DA + F ++P
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS-GLVSEGQ 454
              ++ W  +I  HG  G  ++AL+ FR M  EGV P +  FV++L ACS    L+ EG+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 455 R 455
           R
Sbjct: 121 R 121


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 391/716 (54%), Gaps = 15/716 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y + G   E ++ F +  + S LR D +TF   L  C   +D   G+ IH  +   
Sbjct: 12  LISGYTQMGFYHEVMNLFKEARM-SDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVS 70

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    V +  SL+ MYC+ G  + AR +F+     DS SWN++I+GY + G+  E L +L
Sbjct: 71  GLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLL 130

Query: 118 DEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +M   G++++   + S L  C    S +I  G ++H   VK GL+ ++ V   L++ YA
Sbjct: 131 VKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYA 190

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPIT--AHGFFTTMQQAGIQPDL 230
           K G +  A ++F  M + +VV +N++IA +   E   D     A   F  MQ  G++P  
Sbjct: 191 KIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSE 250

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  S+    + +      + +H  I +      D  IGNA+V++Y+  G I      F 
Sbjct: 251 FTFSSILKACSTIEAFECGKQIHAQIFKYN-LQSDEFIGNALVELYSLSGSIEDGLKCFH 309

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
             P  DV+SW +LI G+ QNG     + +F  +       P++ T   +L A +++ A++
Sbjct: 310 STPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGR-KPDEFTISIMLSACANLAAVK 368

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G +IHA  IK  +     +    + MY KCG ID A   F +      V W+ +IS + 
Sbjct: 369 SGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNA 428

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG   +A++ F  M   G+ P+HITF+ +L ACSH GLV EG RYF +M+++ GI P++
Sbjct: 429 QHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNV 488

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KH  C+VDL GRAG L  A +FI +     D  +W +LL ACR+H   + G   ++R+ E
Sbjct: 489 KHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIE 548

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++ E    YVL+ NIY + G      E+R+L +DRG+KK PG S IEV N V  F  G+R
Sbjct: 549 LEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDR 608

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS-HSERLAIAFGIIS 649
           +HP  + IY +L  +  ++K L Y+ D+  V    E   K++ + S HSE+LA+ FGIIS
Sbjct: 609 SHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIIS 667

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            P  +P+++ KNLR C  CH   K  S++  REII+RD  RFH F+DG CSCGDYW
Sbjct: 668 LPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 222/437 (50%), Gaps = 15/437 (3%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP R+  SWN++ISGY Q G   E +++  E R+  + +D  T ++ L VC R+ ++  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ- 207
            LIH  I   GL   + ++N+LI+MY K G +  A  VF+   E D VSWNS+IA Y + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 208 -SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFME 264
            SND +        M + G+  +   L S          +     + +HG  ++ G  + 
Sbjct: 121 GSNDEMLR--LLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL- 177

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----NGLASEAIEV 319
           DV++G A++D YAK+G +  A  +F+ +P  +V+ +N +I G+ Q     +  A+EA+ +
Sbjct: 178 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL 237

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F  M+    + P++ T+ SIL A S + A   G +IHA++ K  L  D F+   LV++Y 
Sbjct: 238 FFEMQS-RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
             G I+D +  F+  P+   V W ++I  H  +GQ +  L  F ++L  G +PD  T   
Sbjct: 297 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 356

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L+AC++   V  G++  H    + GI          + ++ + G +  A N        
Sbjct: 357 MLSACANLAAVKSGEQ-IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSA-NMTFKETKN 414

Query: 500 PDASIWGALLGACRIHG 516
           PD   W  ++ +   HG
Sbjct: 415 PDIVSWSVMISSNAQHG 431


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 388/688 (56%), Gaps = 19/688 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           + P+L  C    +L   + +H  ++K G   D+FVA SL++ Y R G +  AR LFD MP
Sbjct: 81  YVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMP 140

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            ++  +W A+I+GY  +   +EAL++  EM   G      T+ ++L  C+ S+N   G  
Sbjct: 141 EKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQ 200

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA-YEQSN 209
           +H Y +K+       + N+L  MYAK G +  A+R F  + +++V++W ++I+A  E  N
Sbjct: 201 VHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDEN 260

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                   F  M   G+ P+  TL S+ S+     D    + V  F  + G    ++ + 
Sbjct: 261 YTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGC-QTNIPVK 319

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----------NGLASEAIE 318
           N+ + +Y + G  + A   FE +    +I+WN +I+GYAQ                +A++
Sbjct: 320 NSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALK 379

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           VF+ ++  + + P+  T+ SIL   S + AL QG +IHA+ IK     DV V + LV+MY
Sbjct: 380 VFRNLKR-SAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMY 438

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG I+DA   F ++   + V W ++IS +  HG+  +A+  F  M   GVRP+ ITFV
Sbjct: 439 NKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFV 498

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L+ACS++GL  + + YF MM+EE+ I+P + HYGCMVD+F R G L  A  FI+    
Sbjct: 499 CVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGF 558

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P+ +IW +L+  CR HGNMEL   A+DRL E+  + +  YVL+ N+Y +  +W  V  V
Sbjct: 559 EPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARV 618

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L +  GL      S I + +KV  F   ++TH   +++Y  L NL  K K++GY P +
Sbjct: 619 RKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEPYQ 678

Query: 619 SFVLQDVEEDEKEHI--LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
           S  L D E+D+K     +  HSERLA+A G++ +PP + +++ KN+ +C DCH+  KF S
Sbjct: 679 SAELSDSEDDKKPPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKFFS 738

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDY 704
            +  REI+VRDS R H FKDG CSCGD+
Sbjct: 739 LLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 238/491 (48%), Gaps = 56/491 (11%)

Query: 1   MISVYVRCG-------------------------------RLSEAVDCFYQFTLTSGLRP 29
           +++ Y+RCG                               +L EA++ F +  L +G  P
Sbjct: 119 LVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEM-LEAGRYP 177

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
             YT   +L AC    N   G ++H   +K        +  SL  MY + G    A + F
Sbjct: 178 SHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAF 237

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
             +P ++  +W  MIS   +  N  E  L +  +M ++GV  +  T+ S++ +C    ++
Sbjct: 238 RMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDL 297

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +  +  K G + N+ V N+ + +Y + G    A+R F++M +  +++WN++I+ Y
Sbjct: 298 NLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGY 357

Query: 206 EQ----SNDPITA--HGF-----FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            Q    + D + A   GF     F  ++++ ++PDL T  S+ S+ + +        +H 
Sbjct: 358 AQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHA 417

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
             ++ G F+ DV++ +A+V+MY K G I  A   F  + ++ +++W ++I+GY+Q+G   
Sbjct: 418 QTIKTG-FLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQ 476

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--T 372
           EAI++F+ M     + PN+ T+V +L A S+ G L +  + +  ++K     +  V    
Sbjct: 477 EAIQLFEDMRFAG-VRPNEITFVCVLSACSYAG-LAEKAEHYFDMMKEEYKIEPIVDHYG 534

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           C+VDM+ + GR+DDA +   +     +   W+++++  G    G+  L F+       +R
Sbjct: 535 CMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVA--GCRSHGNMELAFYAADRLIELR 592

Query: 432 PDHI-TFVSLL 441
           P  I T+V LL
Sbjct: 593 PKGIETYVLLL 603



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 216/457 (47%), Gaps = 20/457 (4%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA----LDILDEMRL--EGVSMDPI 130
           G A+  R     +   D  +WN       Q+G+ +EA    LD+ + M +  EG ++   
Sbjct: 20  GGADSRRPPPSSVSAADKNNWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREGKTVQSA 79

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
               +L VC  + ++     +H ++VK G   ++FV+ +L+N Y + G  + A  +FDQM
Sbjct: 80  MYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQM 139

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            E++VV+W ++I  Y  ++  + A   F  M +AG  P   TL ++ +  +  N+     
Sbjct: 140 PEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGS 199

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VHG+ ++    +    IGN++  MYAK G + SA   F  +P K+VI+W T+I+  A++
Sbjct: 200 QVHGYTIKY-RALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAED 258

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
              +E      +    + + PN+ T  S++        L  G ++ A   K     ++ V
Sbjct: 259 ENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPV 318

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG---------IHG--QGDKAL 419
               + +Y + G  D+AM  F ++   S + WNA+IS +          +H   +G +AL
Sbjct: 319 KNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQAL 378

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             FR +    ++PD  TF S+L+ CS    + +G++  H    + G    +     +V++
Sbjct: 379 KVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQ-IHAQTIKTGFLSDVVVNSALVNM 437

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           + + G +  A      M +R   + W +++     HG
Sbjct: 438 YNKCGCIEDATKAFVEMSIRTLVT-WTSMISGYSQHG 473


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 391/716 (54%), Gaps = 15/716 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y + G   E ++ F +  + S LR D +TF   L  C   +D   G+ IH  +   
Sbjct: 91  LISGYTQMGFYHEVMNLFKEARM-SDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVS 149

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    V +  SL+ MYC+ G  + AR +F+     DS SWN++I+GY + G+  E L +L
Sbjct: 150 GLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLL 209

Query: 118 DEMRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +M   G++++   + S L  C    S +I  G ++H   VK GL+ ++ V   L++ YA
Sbjct: 210 VKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYA 269

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPIT--AHGFFTTMQQAGIQPDL 230
           K G +  A ++F  M + +VV +N++IA +   E   D     A   F  MQ  G++P  
Sbjct: 270 KIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSE 329

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  S+    + +      + +H  I +      D  IGNA+V++Y+  G I      F 
Sbjct: 330 FTFSSILKACSTIEAFECGKQIHAQIFKYN-LQSDEFIGNALVELYSLSGSIEDGLKCFH 388

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
             P  DV+SW +LI G+ QNG     + +F  +       P++ T   +L A +++ A++
Sbjct: 389 STPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGR-KPDEFTISIMLSACANLAAVK 447

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G +IHA  IK  +     +    + MY KCG ID A   F +      V W+ +IS + 
Sbjct: 448 SGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNA 507

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG   +A++ F  M   G+ P+HITF+ +L ACSH GLV EG RYF +M+++ GI P++
Sbjct: 508 QHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNV 567

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KH  C+VDL GRAG L  A +FI +     D  +W +LL ACR+H   + G   ++R+ E
Sbjct: 568 KHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIE 627

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++ E    YVL+ NIY + G      E+R+L +DRG+KK PG S IEV N V  F  G+R
Sbjct: 628 LEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDR 687

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS-HSERLAIAFGIIS 649
           +HP  + IY +L  +  ++K L Y+ D+  V    E   K++ + S HSE+LA+ FGIIS
Sbjct: 688 SHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIIS 746

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            P  +P+++ KNLR C  CH   K  S++  REII+RD  RFH F+DG CSCGDYW
Sbjct: 747 LPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 156/503 (31%), Positives = 261/503 (51%), Gaps = 18/503 (3%)

Query: 26  GLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL  D  T+  +++      +L+ GK  H  ++K  F+  +F+  +LL+MYC+ G  +VA
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           +KLFD MP R+  SWN++ISGY Q G   E +++  E R+  + +D  T ++ L VC R+
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G LIH  I   GL   + ++N+LI+MY K G +  A  VF+   E D VSWNS+I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 203 AAYEQ--SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ--LNDCRNSRSVHGFIMR 258
           A Y +  SND +        M + G+  +   L S          +     + +HG  ++
Sbjct: 194 AGYVRIGSNDEMLR--LLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----NGLA 313
            G  + DV++G A++D YAK+G +  A  +F+ +P  +V+ +N +I G+ Q     +  A
Sbjct: 252 LGLDL-DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFA 310

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           +EA+ +F  M+    + P++ T+ SIL A S + A   G +IHA++ K  L  D F+   
Sbjct: 311 NEAMYLFFEMQS-RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNA 369

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           LV++Y   G I+D +  F+  P+   V W ++I  H  +GQ +  L  F ++L  G +PD
Sbjct: 370 LVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPD 429

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
             T   +L+AC++   V  G++  H    + GI          + ++ + G +  A N  
Sbjct: 430 EFTISIMLSACANLAAVKSGEQ-IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSA-NMT 487

Query: 494 QNMPVRPDASIWGALLGACRIHG 516
                 PD   W  ++ +   HG
Sbjct: 488 FKETKNPDIVSWSVMISSNAQHG 510


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 362/601 (60%), Gaps = 7/601 (1%)

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           C   +   A+  +D ++  G+  D  T + ++  C  +  +  G LI  ++  +G    +
Sbjct: 37  CYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMM 96

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           F+ N LINMY KF ++  A ++FDQM +R+V+SW ++I+AY +      A      M + 
Sbjct: 97  FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            ++P++ T    +S++   N   + R +H  I++ G    DV + +A++D++AKLG    
Sbjct: 157 NVRPNVYTY---SSVLRSCNGMSDVRMLHCGIIKEG-LESDVFVRSALIDVFAKLGEPED 212

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A +VF+ +   D I WN++I G+AQN  +  A+E+F+ M+    I   Q T  S+L A +
Sbjct: 213 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACT 271

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +  L  G++ H  ++K     D+ +   LVDMY KCG ++DA+ +F Q+     + W+ 
Sbjct: 272 GLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +IS    +G   +AL  F +M   G +P++IT V +L ACSH+GL+ +G  YF  M++ +
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P  +HYGCM+DL G+AG L  A   +  M   PDA  W  LLGACR+  NM L   A
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYA 449

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           + ++  +D E+ G Y L+SNIYAN  KW+ V+E+R+  RDRG+KK PG S IEVN ++  
Sbjct: 450 AKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHA 509

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+ +HP+  ++  +L  L  ++  +GYVP+ +FVLQD+E ++ E  L  HSE+LA+A
Sbjct: 510 FIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALA 569

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG+++ P +  I+I KNLR+CGDCH + K  S++  R I++RD  R+HHF+DG CSCGDY
Sbjct: 570 FGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDY 629

Query: 705 W 705
           W
Sbjct: 630 W 630



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 206/389 (52%), Gaps = 14/389 (3%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           + GL  D  T+  ++K C   R + +G  I   +   G    +F+   L++MY +F L N
Sbjct: 54  SHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLN 113

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            A +LFD MP R+  SW  MIS Y +     +AL++L  M  + V  +  T +S+L  C 
Sbjct: 114 DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN 173

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
              ++    ++H  I+K GLE ++FV + LI+++AK G    AL VFD+M+  D + WNS
Sbjct: 174 GMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           II  + Q++    A   F  M++AG   +  TL S+      L         H  I++  
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK-- 288

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            + +D+I+ NA+VDMY K G +  A  VF  +  +DVI+W+T+I+G AQNG + EA+++F
Sbjct: 289 -YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMY 378
           + M+      PN  T V +L A SH G L  G   + R +K     D       C++D+ 
Sbjct: 348 ERMKSSG-TKPNYITIVGVLFACSHAGLLEDGW-YYFRSMKKLYGIDPVREHYGCMIDLL 405

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
           GK G++DDA+ L  ++     +V W  ++
Sbjct: 406 GKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 168/316 (53%), Gaps = 26/316 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y +C    +A++      L   +RP+ YT+  VL++C  + D + +HC ++K G E
Sbjct: 133 MISAYSKCKIHQKALELLV-LMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE 191

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFV ++L+ ++ + G    A  +FD+M   D+  WN++I G+ Q+  +  AL++   M
Sbjct: 192 SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           +  G   +  T+ S+L  C     +  G+  H++IVK+  + +L ++N L++MY K G +
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSL 309

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             ALRVF+QM ERDV++W+++I+   Q+     A   F  M+ +G +P+ +T      IV
Sbjct: 310 EDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT------IV 363

Query: 241 AQLNDCRNSRSVHGFIMRRGWF----MEDVIIGNAV-------VDMYAKLGIINSACAVF 289
             L  C      H  ++  GW+    M+ +   + V       +D+  K G ++ A  + 
Sbjct: 364 GVLFACS-----HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 290 EGLPVK-DVISWNTLI 304
             +  + D ++W TL+
Sbjct: 419 NEMECEPDAVTWRTLL 434


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/596 (39%), Positives = 350/596 (58%), Gaps = 37/596 (6%)

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +S  I   L IH  + +HGL+ +  ++  L   YA  G + +++ +F +     V  W +
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           II  +        A  F+  M   G++P+  T  S    + +L      +++H   ++ G
Sbjct: 99  IIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSS----ILKLCPIEPGKALHSQAVKLG 154

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS--------------------- 299
            F  D+ +   ++D+YA+ G + SA  +F+ +P K ++S                     
Sbjct: 155 -FDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 213

Query: 300 ----------WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
                     WN +I GY QNG+ +EA+ +F+ M +  +  PN+ T +S+L A   +GAL
Sbjct: 214 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA-KAKPNEVTVLSVLSACGQLGAL 272

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
             G  +H+ +  N + F+V V T LVDMY KCG ++DA  +F ++     V WN++I  +
Sbjct: 273 ESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 332

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +HG   +AL  F+ M   G+ P +ITF+ +L+AC HSG V+EG   F+ M++E+GI+P 
Sbjct: 333 AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK 392

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HYGCMV+L GRAGH+  A+  ++NM + PD  +WG LLGACR+HG + LG    + L 
Sbjct: 393 IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLV 452

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           + +  N G Y+L+SNIYA VG W+GV  +R++ +D G+KK PG SSIEVNNKV  F  G 
Sbjct: 453 DQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGG 512

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
             HPK ++IY  L  +   +KS GY P    VL D+ E EKE  L  HSE+LAIAFG+I+
Sbjct: 513 LNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLIN 572

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + P + I+I KNLRVC DCH  TK IS+IT R+I+VRD NRFHHF +G CSCGDYW
Sbjct: 573 TQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 186/400 (46%), Gaps = 41/400 (10%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +IH  + + G +    +   L   Y   G  + +  LF          W A+I G+   G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
              +AL+   +M  +GV  +  T +SIL +C     I  G  +H   VK G + +L+V  
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRT 163

Query: 169 NLINM-------------------------------YAKFGMMRHALRVFDQMMERDVVS 197
            L+++                               YAK G +  A  +FD M ERD V 
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN +I  Y Q+  P  A   F  M +A  +P+ +T++S+ S   QL    + R VH +I 
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
             G    +V +G A+VDMY+K G +  A  VF+ +  KDV++WN++I GYA +G + EA+
Sbjct: 284 NNG-IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLV 375
           ++F+ M     ++P   T++ IL A  H G + +G  I  + +K+    +  +    C+V
Sbjct: 343 QLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWDIFNK-MKDEYGIEPKIEHYGCMV 400

Query: 376 DMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
           ++ G+ G ++ A  L   +      V W  ++    +HG+
Sbjct: 401 NLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 173/385 (44%), Gaps = 67/385 (17%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           L E    FY   LT G+ P+ +TF  +LK C  +  GK +H   +KLGF+ D++V   LL
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP-IEPGKALHSQAVKLGFDSDLYVRTGLL 166

Query: 71  HMYCRFGLANVARKLFDDMPV-------------------------------RDSGSWNA 99
            +Y R G    A++LFD MP                                RD   WN 
Sbjct: 167 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 226

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           MI GY Q+G   EAL +   M       + +TV S+L  C +   + SG  +H YI  +G
Sbjct: 227 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 286

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           ++FN+ V   L++MY+K G +  A  VFD++ ++DVV+WNS+I  Y        A   F 
Sbjct: 287 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 346

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY--- 276
           +M + G+ P  +T + +      L+ C +S          GW  E   I N + D Y   
Sbjct: 347 SMCRMGLHPTNITFIGI------LSACGHS----------GWVTEGWDIFNKMKDEYGIE 390

Query: 277 -------------AKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM 322
                         + G +  A  + + + ++ D + W TL+     +G  +   ++ ++
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 323 MEECNEINPNQGTYVSILPAYSHVG 347
           + + N    N GTY+ +   Y+ VG
Sbjct: 451 LVDQNL--ANSGTYILLSNIYAAVG 473



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI  Y + G  +EA+  F +  L +  +P+  T   VL AC  L     G+ +H  +   
Sbjct: 227 MIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 285

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +++V V  +L+ MY + G    AR +FD +  +D  +WN+MI GY   G + EAL + 
Sbjct: 286 GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLF 345

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M   G+    IT   IL  C  S  +  G  I   +  ++G+E  +     ++N+  +
Sbjct: 346 KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 405

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  +   M +E D V W +++ A
Sbjct: 406 AGHVEQAYELVKNMNIEPDPVLWGTLLGA 434


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 353/574 (61%), Gaps = 7/574 (1%)

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFV 166
           G  + ALD++    L     D    + +L  C R   +  G ++H ++V  H L+ +L +
Sbjct: 69  GTGLYALDLIQRGSL---VPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N ++NMYAK G +  A R+FD+M  +D+V+W ++IA + Q+N P  A   F  M + G+
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL 185

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           QP+  TL SL       +       +H F ++ G +   V +G+A+VDMYA+ G +++A 
Sbjct: 186 QPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYG-YQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F+G+P K  +SWN LI+G+A+ G    A+ +   M+  N   P   TY S+  A + +
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVFSACASI 303

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL QG  +HA +IK+ L    F+   L+DMY K G IDDA  +F ++ +   V WN ++
Sbjct: 304 GALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTML 363

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           +    HG G + L+ F QML  G+ P+ I+F+ +LTACSHSGL+ EG  YF +M++ + +
Sbjct: 364 TGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKV 422

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           +P + HY   VDL GR G L  A  FI+ MP+ P A++WGALLGACR+H NMELG  A++
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAE 482

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           R FE+D  + G  +L+SNIYA+ G+W  V +VR + ++ G+KK P  S +E+ N V +F 
Sbjct: 483 RAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFV 542

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
             + THP+ ++I  +   ++ K+K +GYVPD S VL  V++ E+E  L  HSE+LA+AF 
Sbjct: 543 ANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFA 602

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           ++++P  SPI+I KN+RVCGDCH   KF+S+I E
Sbjct: 603 LLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIYE 636



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 206/391 (52%), Gaps = 7/391 (1%)

Query: 27  LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLL-HMYCRFGLANVA 82
           L PD+  +  +LK C  L     G+ +H  ++   F  +  V  +++ +MY + G  + A
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R++FD+MP +D  +W A+I+G+ Q+    +AL +  +M   G+  +  T++S+L      
Sbjct: 143 RRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSE 202

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H + +K+G + +++V + L++MYA+ G M  A   FD M  +  VSWN++I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           + + +  +   A      MQ+   QP   T  S+ S  A +      + VH  +++ G  
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLK 322

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           +    IGN ++DMYAK G I+ A  VF+ L   DV+SWNT++TG AQ+GL  E ++ F+ 
Sbjct: 323 L-IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M     I PN+ +++ +L A SH G L +G+     + K  +  DV      VD+ G+ G
Sbjct: 382 MLRIG-IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            +D A     ++P   ++  W A++    +H
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMH 471



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 163/313 (52%), Gaps = 16/313 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ + +  R  +A+  F Q  L  GL+P+ +T   +LKA      L  G ++H   LK 
Sbjct: 160 LIAGFSQNNRPRDALLLFPQM-LRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY 218

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G++  V+V ++L+ MY R G  + A+  FD MP +   SWNA+ISG+ + G    AL +L
Sbjct: 219 GYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLL 278

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+ +       T +S+   CA    +  G  +H +++K GL+   F+ N L++MYAK 
Sbjct: 279 WKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKA 338

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A RVFD++++ DVVSWN+++    Q          F  M + GI+P+ ++ + + 
Sbjct: 339 GSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCV- 397

Query: 238 SIVAQLNDCRNS----RSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGL 292
                L  C +S      ++ F + + + +E DV      VD+  ++G+++ A      +
Sbjct: 398 -----LTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452

Query: 293 PVKDVIS-WNTLI 304
           P++   + W  L+
Sbjct: 453 PIEPTAAVWGALL 465


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/583 (39%), Positives = 349/583 (59%), Gaps = 6/583 (1%)

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           S+D   V+S++       +I    L+H  +VK     + F+ + L+  Y + G    A +
Sbjct: 29  SLDA-NVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEK 87

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQL 243
           +FD+M ERD+VSWNS+I+ Y             + M   + G +P+ +T +S+ S     
Sbjct: 88  LFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYG 147

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R +HG +M+ G  +E+V + NA ++ Y K G + S+C +FE L +K+++SWNT+
Sbjct: 148 GSKEEGRCIHGLVMKFG-VLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTM 206

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I  + QNGLA + +  F M        P+Q T++++L +   +G +R    IH  ++   
Sbjct: 207 IVIHLQNGLAEKGLAYFNMSRRVGH-EPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGG 265

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              +  + T L+D+Y K GR++D+ ++F+++    S+ W A+++ +  HG G  A+  F 
Sbjct: 266 FSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFE 325

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            M+  G+ PDH+TF  LL ACSHSGLV EG+ YF  M + + I P L HY CMVDL GR+
Sbjct: 326 LMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRS 385

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A+  I+ MP+ P + +WGALLGACR++ + +LG  A++RLFE++  +   YV++S
Sbjct: 386 GLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLS 445

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIY+  G W+    +R+L + +GL +  G S IE  NK+  F  G+ +HP+ EKI  +L+
Sbjct: 446 NIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLK 505

Query: 604 NLTAKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
            +  KMKS +GY     FVL DV ED KE ++  HSE++A+AFG++   P  PI I KNL
Sbjct: 506 EIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNL 565

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R+CGDCH   K IS I +R II+RDS RFHHF DG CSC DYW
Sbjct: 566 RICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 218/449 (48%), Gaps = 9/449 (2%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           Q +    L  +  +    +K+C ++   + +HC V+K       F+   L+  Y R G  
Sbjct: 23  QSSFVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHD 82

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILP 137
             A KLFD+MP RD  SWN++ISGY   G   +  ++L  M +  V   P  +T  S++ 
Sbjct: 83  VCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMIS 142

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            C    +   G  IH  ++K G+   + V N  IN Y K G +  + ++F+ +  +++VS
Sbjct: 143 ACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS 202

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++I  + Q+        +F   ++ G +PD  T +++      +   R ++ +HG IM
Sbjct: 203 WNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIM 262

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
             G F  +  I  A++D+Y+KLG +  +  VF  +   D ++W  ++  YA +G   +AI
Sbjct: 263 -FGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAI 321

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV--ATCLV 375
           + F++M     I+P+  T+  +L A SH G + +G K +   +      D  +   +C+V
Sbjct: 322 KHFELMVHYG-ISPDHVTFTHLLNACSHSGLVEEG-KHYFETMSKRYRIDPRLDHYSCMV 379

Query: 376 DMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           D+ G+ G + DA  L  ++P   SS  W A++    ++           ++ +   R D 
Sbjct: 380 DLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPR-DG 438

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
             +V L    S SGL  +  R  ++M+++
Sbjct: 439 RNYVMLSNIYSASGLWKDASRIRNLMKQK 467



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI ++++ G L+E    ++  +   G  PD  TF  VL++C ++      + IH  ++  
Sbjct: 206 MIVIHLQNG-LAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +  +  +LL +Y + G    +  +F ++   DS +W AM++ Y   G   +A+   
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
           + M   G+S D +T   +L  C+ S  +  G         ++ ++  L   + ++++  +
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G+++ A  +  +M ME     W +++ A
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGA 413


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/635 (37%), Positives = 366/635 (57%), Gaps = 42/635 (6%)

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           CQ     EAL IL ++     S+     ++++  C +S  +  G  +H +I   G    L
Sbjct: 50  CQQNRLKEALQILHQIDKPSASV----YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGL 105

Query: 165 FVSNNLINMYAK-------------------------------FGMMRHALRVFDQMMER 193
           F+ N L+ MYAK                                G+++ A  +FD+M ER
Sbjct: 106 FILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER 165

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           D  SW ++I+ Y + + P  A   F  M+++   + +  T+ S  +  A +   R  + +
Sbjct: 166 DNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEI 225

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HG+IMR G    D ++ +A+ DMY K G I  A  +F+ +  +D+++W  +I  Y Q+G 
Sbjct: 226 HGYIMRTG-LDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFV 370
             E  ++F  +     I PN+ T+  +L A ++  +   G K+H  + +  + FD   F 
Sbjct: 285 RKEGFDLFADLLRSG-IRPNEFTFSGVLNACANQTSEELGKKVHGYMTR--VGFDPFSFA 341

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           A+ LV MY KCG +  A  +F + P+     W ++I+ +  +GQ D+A+ +F  ++  G 
Sbjct: 342 ASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGT 401

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +PDHITFV +L+AC+H+GLV +G  YFH ++E++G+     HY C++DL  R+G    A 
Sbjct: 402 QPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAE 461

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
           N I  M ++PD  +W +LLG CRIHGN++L   A++ LFE++ EN   YV ++NIYA  G
Sbjct: 462 NIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAG 521

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
            W  V ++R    DRG+ K PG S I +   V +F  G+ +HPK ++I + L  L+ +MK
Sbjct: 522 MWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMK 581

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             G+VPD +FVL DVE+++KE  L+ HSE+LA+AFGIIS+P  +PI++FKNLR C DCH 
Sbjct: 582 EEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHT 641

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             KFIS+IT R+IIVRDSNRFH F+DG CSC DYW
Sbjct: 642 AIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 236/504 (46%), Gaps = 47/504 (9%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           I +  +  RL EA+   +Q       +P    +  ++++C   R L  GKK+H  +   G
Sbjct: 46  IHILCQQNRLKEALQILHQID-----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSG 100

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           F   +F+   LL MY +      ++KLFD+MP RD  SWN +ISGY + G   EA  + D
Sbjct: 101 FVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFD 160

Query: 119 EM----RLEGVSM--------DPITVASILPVCARSDNILS------------------- 147
           +M         +M         P     +  +  RSDN  S                   
Sbjct: 161 KMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLR 220

Query: 148 -GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  IH YI++ GL+ +  V + L +MY K G +  A  +FD+M++RD+V+W ++I  Y 
Sbjct: 221 IGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYF 280

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q          F  + ++GI+P+  T   + +  A        + VHG++ R G F    
Sbjct: 281 QDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG-FDPFS 339

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
              +A+V MY+K G + SA  VF+  P  D+ SW +LI GYAQNG   EAI  F+++ + 
Sbjct: 340 FAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKS 399

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
               P+  T+V +L A +H G + +G+   H+   +  L        C++D+  + G+ D
Sbjct: 400 G-TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTA 443
           +A ++  ++  +     W +++    IHG    A      + +  + P++  T+V+L   
Sbjct: 459 EAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANI 516

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIK 467
            + +G+ SE  +    M +   +K
Sbjct: 517 YATAGMWSEVAKIRKTMDDRGVVK 540



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 167/363 (46%), Gaps = 14/363 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YVR  R +EA++ F     +   + + +T    L A      L  GK+IH  +++ 
Sbjct: 173 MISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRT 232

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D  V ++L  MY + G    AR +FD M  RD  +W AMI  Y Q G   E  D+ 
Sbjct: 233 GLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLF 292

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            ++   G+  +  T + +L  CA   +   G  +H Y+ + G +   F ++ L++MY+K 
Sbjct: 293 ADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKC 352

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A RVF +  + D+ SW S+IA Y Q+  P  A  +F  + ++G QPD +T V + 
Sbjct: 353 GNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVL 412

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  A              I  +            ++D+ A+ G  + A  +   + +K D
Sbjct: 413 SACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPD 472

Query: 297 VISWNTLITGYAQNG---LASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQG 352
              W +L+ G   +G   LA  A E         EI P N  TYV++   Y+  G   + 
Sbjct: 473 KFLWASLLGGCRIHGNLKLAQRAAEAL------FEIEPENPATYVTLANIYATAGMWSEV 526

Query: 353 IKI 355
            KI
Sbjct: 527 AKI 529


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/745 (35%), Positives = 397/745 (53%), Gaps = 57/745 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           MIS YVR  +  +  D F +     G  PD   F  VL A   L D    + +   VLK 
Sbjct: 194 MISGYVRIEQHGKGWDIF-RMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKT 252

Query: 58  GFEWDVFVAASLLHMYCRFGLA-NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           GFE DV +  S+L++Y R   A ++A K FD M  R+  +W+ MI+     G    A+ +
Sbjct: 253 GFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAV 312

Query: 117 LDEMRLEGVSMDPI----TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLI 171
                      DP+    +  ++L   AR      G +    I+   +   + VS N +I
Sbjct: 313 YGR--------DPVKSIPSQTALLTGLARC-----GRITEARILFEQIPDPIVVSWNAMI 359

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
             Y + GM+  A  +FD+M  R+ +SW  +IA Y Q+     A      + + G+ P L 
Sbjct: 360 TGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLS 419

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL------------ 279
           +L S     + +      R VH   ++ G      +  NA++ MY K             
Sbjct: 420 SLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVC-NALISMYGKCRNMEYVRQVFNR 478

Query: 280 -------------------GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
                               ++  A  +F+ +  +DV+SW T+I+ YAQ     EA+E F
Sbjct: 479 MRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFF 538

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M   +E  PN      +L     +G+ + G +IH   IK+ +  ++ VA  L+ MY K
Sbjct: 539 KTMLHEHE-KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFK 597

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG   D+  +F  +       WN  I+    HG G +A+  +  M   GV P+ +TFV L
Sbjct: 598 CG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGL 656

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L ACSH+GLV EG ++F  M  ++G+ P L+HY CMVDL GR G +  A  FI +MP+ P
Sbjct: 657 LNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEP 716

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
           D  IW ALLGAC+IH N E+G  A+++LF  +  N G YV++SNIY+++G W  V E+R 
Sbjct: 717 DTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRK 776

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
           + + RG+ K PG S +++ NKV  F TG++ H K E+I   L++L   ++  GYVPD  F
Sbjct: 777 IMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEF 836

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           VL D++E++KE  L  HSE+LA+A+G++ +P   PIQI KNLR+CGDCH + KF+S +T+
Sbjct: 837 VLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTK 896

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           R+I +RD NRFHHF++G CSCGD+W
Sbjct: 897 RDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 168/646 (26%), Positives = 279/646 (43%), Gaps = 106/646 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT-----LTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVL 55
           MIS Y   G L +A   F   +       + L   +     VL A R + DG     +V 
Sbjct: 70  MISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDA-RRVFDGMPERNTV- 127

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA-- 113
                W+  V+      Y + G   +AR+LFD MP RD  SWN+M++GYC S   V+A  
Sbjct: 128 ----AWNAMVSC-----YVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWN 178

Query: 114 -----------------------------LDILDEMRLEGVSMDPITVASILPVCARSDN 144
                                         DI   M  EG S D    AS+L       +
Sbjct: 179 LFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQD 238

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIA 203
           +    ++   ++K G E ++ +  +++N+Y +    +  A++ FD M+ER+  +W+++IA
Sbjct: 239 LGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIA 298

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A         A   +      G  P + ++ S T+++  L  C   R     I+      
Sbjct: 299 ALSHGGRIDAAIAVY------GRDP-VKSIPSQTALLTGLARC--GRITEARILFEQIPD 349

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
             V+  NA++  Y + G+++ A  +F+ +P ++ ISW  +I GYAQNG + EA+++ Q +
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-- 381
              N + P+  +  S   A SH+GAL  G ++H+  +K    F+ +V   L+ MYGKC  
Sbjct: 410 HR-NGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468

Query: 382 -----------------------------GRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
                                          ++DA  +F  +     V W  IIS +   
Sbjct: 469 MEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQA 528

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
            +GD+A+ FF+ ML E  +P+      LL+ C   G    GQ+  H +  + G+   L  
Sbjct: 529 ERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQ-IHTVAIKHGMDSELIV 587

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
              ++ ++ + G    +H    +M  R D   W   +  C  HG   LG  A  +++E  
Sbjct: 588 ANALMSMYFKCG-CADSHKVFDSMEER-DIFTWNTFITGCAQHG---LGREAI-KMYE-H 640

Query: 533 SENVGY------YVLMSNIYANVGKW-EGVDEVRSLARDRGLKKTP 571
            E+VG       +V + N  ++ G   EG    +S++RD GL  TP
Sbjct: 641 MESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGL--TP 684



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 180/447 (40%), Gaps = 91/447 (20%)

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
            R G    AR++FD MP RD  +WN+MIS YC SG   +A  + D      +S   +  A
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFD-----AISGGNVRTA 98

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           +IL         LSG                         YA+ G +  A RVFD M ER
Sbjct: 99  TIL---------LSG-------------------------YARLGRVLDARRVFDGMPER 124

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           + V+WN++++ Y Q+ D   A   F  M                                
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPS------------------------------ 154

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
                      DV   N++V  Y     +  A  +F+ +P +++++W  +I+GY +    
Sbjct: 155 ----------RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQH 204

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            +  ++F+MM      +P+Q  + S+L A + +  L     +   V+K     DV + T 
Sbjct: 205 GKGWDIFRMMHH-EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTS 263

Query: 374 LVDMYGK-CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
           ++++Y +    +D A+  F  +   +   W+ +I+     G+ D A+  + +   + + P
Sbjct: 264 ILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-P 322

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
                 +LLT  +  G ++E +  F  + +     P +  +  M+  + + G +  A   
Sbjct: 323 SQ---TALLTGLARCGRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKEL 374

Query: 493 IQNMPVRPDASIWGALLGACRIHGNME 519
              MP R   S W  ++     +G  E
Sbjct: 375 FDRMPFRNTIS-WAGMIAGYAQNGRSE 400



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 14/206 (6%)

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           +A+L   R +R V   +  R     D+I  N+++  Y   G++  A  +F+ +   +V +
Sbjct: 43  LARLGRLREAREVFDAMPHR-----DIIAWNSMISAYCNSGMLEDARILFDAISGGNVRT 97

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
              L++GYA+ G   +A  VF  M E N +  N     +++  Y   G     I +  R+
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTVAWN-----AMVSCYVQNG----DITMARRL 148

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
                  DV     +V  Y    ++ DA +LF Q+P+ + V W  +IS +    Q  K  
Sbjct: 149 FDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGW 208

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACS 445
           + FR M  EG  PD   F S+L+A +
Sbjct: 209 DIFRMMHHEGASPDQSNFASVLSAVT 234


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/573 (42%), Positives = 343/573 (59%), Gaps = 3/573 (0%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           SIL  C  S ++ +G  +H  ++  GL  +  +S  L+++YA  G + HA R+FD M +R
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           +V  WN +I AY +      A   +  M + G++PD  T   +    A L D    R VH
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             +    W  +DV +   VVDMYAK G ++ A AVF+G+ V+D + WN++I  Y QNG  
Sbjct: 187 QRVSGTRWG-QDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA+ + + M   N I P   T VS + A +   AL +G ++H    +        + T 
Sbjct: 246 MEALALCRDMA-ANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTS 304

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML-DEGVRP 432
           LVDMY K G +  A  LF Q+ +   V WNA+I  +G+HG  D+AL  F +M  D  V P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D+ITFV +L+AC+H G+V E + +F++M   + IKP ++HY C++D+ G  G    A++ 
Sbjct: 365 DNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDL 424

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I+ M + PD+ IWGALL  C+IH N+ELG +A  +L E++ E+ G YV +SNIYA  GKW
Sbjct: 425 IKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKW 484

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           E    VR L  +RGLKK    S IE+  K   F  G+ +HP+ ++IY EL  L   M   
Sbjct: 485 EKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDA 544

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVPD   V  +V++DEK +++ SHSERLAIAFG+IS+PP + + + KNLRVC DCH   
Sbjct: 545 GYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVI 604

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K ISQI +REII+RD NR+HHF +G CSC DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 165/572 (28%), Positives = 264/572 (46%), Gaps = 55/572 (9%)

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           ++    +L++C    +L  G+++H  +L  G   D  ++  L+ +Y   G    AR+LFD
Sbjct: 62  YHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFD 121

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            MP R+   WN +I  Y + G    A+ +   M   GV  D  T   +L  CA   ++ +
Sbjct: 122 GMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLET 181

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H  +       ++FV   +++MYAK G +  A  VFD +  RD V WNS+IAAY Q
Sbjct: 182 GREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQ 241

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +  P+ A      M   GI P + TLVS  S  A        R +HGF  RRG+ ++D  
Sbjct: 242 NGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDK- 300

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +  ++VDMYAK G +  A  +FE L  ++++SWN +I GY  +G A EA+ +F  M+   
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDA 360

Query: 328 EINPNQGTYVSILPAYSHVGALRQG-----IKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           ++ P+  T+V +L A +H G + +      + ++A  IK      V   TC++D+ G  G
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPT----VQHYTCVIDVLGHTG 416

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFV 438
           R ++A  L   +     S  W A+++   IH     G+ AL    ++  E    D   +V
Sbjct: 417 RFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPE----DAGNYV 472

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMP 497
            L    + SG   +  R   +M    G+K   K   C  ++L G+       H F+    
Sbjct: 473 HLSNIYAQSGKWEKAARVRKLMTNR-GLK---KILACSWIELKGK------THGFLVGDA 522

Query: 498 VRPDASIWGALLGACRIHGNME-LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
             P +           I+G +E L  + SD          GY   +  ++ NV   E  +
Sbjct: 523 SHPRSD---------EIYGELERLEGLMSD---------AGYVPDIIPVFHNVDDDEKRN 564

Query: 557 EVRS----LARDRGLKKTPGWSSIEVNNKVDI 584
            VRS    LA   GL  TP  + + V   + +
Sbjct: 565 MVRSHSERLAIAFGLISTPPGTKLLVTKNLRV 596



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 186/387 (48%), Gaps = 14/387 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y R G    AV   Y+  +  G+ PD +T+P VLKAC  L+D   G+++H  V   
Sbjct: 134 LIRAYAREGPREAAVR-LYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGT 192

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVFV A ++ MY + G  + AR +FD + VRD+  WN+MI+ Y Q+G  +EAL + 
Sbjct: 193 RWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALC 252

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G+     T+ S +   A +  +  G  +H +  + G      +  +L++MYAK 
Sbjct: 253 RDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKS 312

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G ++ A  +F+Q+M+R++VSWN++I  Y        A   F  M+  A + PD +T V +
Sbjct: 313 GWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGV 372

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S          ++     ++        V     V+D+    G    A  + +G+ ++ 
Sbjct: 373 LSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEP 432

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVGALRQGI 353
           D   W  L+ G   +    + +E+ ++ +++  E+ P + G YV +   Y+  G   +  
Sbjct: 433 DSGIWGALLNGCKIH----KNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAA 488

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGK 380
           ++  R +         +A   +++ GK
Sbjct: 489 RV--RKLMTNRGLKKILACSWIELKGK 513


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 358/574 (62%), Gaps = 3/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + ++L    RS ++  GL +H +I+K GL+    VS+NLIN+Y+K  +   +L+VFD+  
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++   +W+S+I+A+ Q+  P+ A  FF  M   G++PD     S T     L      +S
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH   ++ G++  DV +G+++VDMYAK G I  A  +F+ +P ++V+SW+ +I GYAQ  
Sbjct: 148 VHCLAVKTGYYC-DVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLD 206

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +F+      +++ N  T+ S++   S    L  G  IH   +K       FV 
Sbjct: 207 DGVEALTLFKQ-ALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVG 265

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+ +Y KCG I+ A  +F ++P  +   WN+++     H    +    F +M + G++
Sbjct: 266 SALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ I+F+S+L ACSH+GLV +G+ YF +M++ +GI+P  +HY  +VDL GRAG L  A +
Sbjct: 326 PNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I+ MP+RP  S+WGALL  CRIH + E+ A  +DR+ E+DS + G +VL+SN YA  G+
Sbjct: 385 VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGR 444

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +E    +R + RDRG+KK  G S +E  NKV  F  G+R+H K+ +IY++L  L  +M+ 
Sbjct: 445 YEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEK 504

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GYV D SFVL+ V+ +EK   +  HSERLAIAFG+I+ PP  PI++ KNLRVCGDCH  
Sbjct: 505 AGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAA 564

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KF+S+   R +IVRD+NRFH F+DG CSCGDYW
Sbjct: 565 IKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L  G ++H  +LK G +    V+ +L+++Y +  L   + ++FD+ P + S +W+++I
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA---RSDNILSGLLIHLYIVKH 158
           S + Q+   + AL     M  +GV  D     S    C    RSD    G  +H   VK 
Sbjct: 99  SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD---VGKSVHCLAVKT 155

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G   ++FV ++L++MYAK G +  A  +FD+M ER+VVSW+ +I  Y Q +D + A   F
Sbjct: 156 GYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
                  +  +  T  S+  + +        + +HG  ++   F     +G+A++ +Y+K
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMS-FDSSSFVGSALISLYSK 274

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G+I  A  VF+ +P +++  WN+++   AQ+        +F+ M     + PN  +++S
Sbjct: 275 CGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVG-MKPNFISFLS 333

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RS 397
           +L A SH G + +G +  + +    +  +      LVD+ G+ G++ +A+S+  Q+P R 
Sbjct: 334 VLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRP 393

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           +   W A+++   IH   + A     ++L+       +  V L  A + +G   E  R  
Sbjct: 394 TESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGL-HVLLSNAYAAAGRYEEAARMR 452

Query: 458 HMMQEEFGIK 467
            M+++  G+K
Sbjct: 453 KMLRDR-GVK 461



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 177/343 (51%), Gaps = 9/343 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F++  L  G+RPD + +P   KAC   R    GK +HC  +K G+  DVFV +SL+ MY 
Sbjct: 113 FFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYA 172

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    AR LFD+MP R+  SW+ MI GY Q  + VEAL +  +  +E V ++  T +S
Sbjct: 173 KCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++ VC+ S  +  G LIH   +K   + + FV + LI++Y+K G++  A +VFD++  R+
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +  WNS++ A  Q        G F  M   G++P+ ++ +S+    +        R    
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREY-- 350

Query: 255 FIMRRGWFMEDVIIGNA-VVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGL 312
           F + R + +E      A +VD+  + G +  A +V + +P++   S W  L+TG   +  
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKD 410

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              A  V   + E +  + + G +V +  AY+  G   +  ++
Sbjct: 411 TEMAAFVADRILEMD--SSSSGLHVLLSNAYAAAGRYEEAARM 451



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
            S AI+  Q     N    N     ++L +++   +LRQG+++HA ++K  L     V+ 
Sbjct: 5   TSTAIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSH 64

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+++Y K      ++ +F + P+ SS  W+++IS    +     AL FFR+ML++GVRP
Sbjct: 65  NLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP 124

Query: 433 DHITFVSLLTACSHSGLV--SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           D   + S   AC   G +  S+  +  H +  + G    +     +VD++ + G +G A 
Sbjct: 125 DDHIYPSATKAC---GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDAR 181

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +    MP R   S  G + G  ++   +E   +    L E
Sbjct: 182 HLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIE 221


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/633 (37%), Positives = 366/633 (57%), Gaps = 9/633 (1%)

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           F L  +  + F   P          IS  C +G   EAL    EM + G  M      ++
Sbjct: 2   FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALL---EMAMLGPEMGFHGYDAL 58

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  C     +  G  +H +++K       ++   L+  Y K   +  A +V D+M E++V
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSW ++I+ Y Q+     A   F  M ++  +P+  T  ++ +   + +     + +HG 
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178

Query: 256 IMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           I++  W +   + +G++++DMYAK G I  A  +FE LP +DV+S   +I GYAQ GL  
Sbjct: 179 IVK--WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE 236

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+E+F  +     ++PN  TY S+L A S +  L  G + H  V++  L F   +   L
Sbjct: 237 EALEMFHRLHS-EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPD 433
           +DMY KCG +  A  LF  +P  +++ WNA++  +  HG G + L  FR M DE  V+PD
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355

Query: 434 HITFVSLLTACSHSGLVSEGQRYFH-MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
            +T +++L+ CSH  +   G   F  M+  E+G KP  +HYGC+VD+ GRAG +  A  F
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEF 415

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I+ MP +P A + G+LLGACR+H ++++G     RL E++ EN G YV++SN+YA+ G+W
Sbjct: 416 IKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRW 475

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
             V+ VR++   + + K PG S I+    +  F+  +RTHP+ E++  +++ ++ KMK  
Sbjct: 476 ADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQA 535

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVPD S VL DV+E++KE +L  HSE+LA+ FG+I++    PI++FKNLR+C DCHN+ 
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K  S++ ERE+ +RD NRFH   DGICSCGDYW
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 210/409 (51%), Gaps = 30/409 (7%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           IS     GRL EA+          G    F+ +  +L AC   R L DG+++H  ++K  
Sbjct: 27  ISQLCSNGRLQEALLEMAMLGPEMG----FHGYDALLNACLDKRALRDGQRVHAHMIKTR 82

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +    ++   LL  Y +      ARK+ D+MP ++  SW AMIS Y Q+G++ EAL +  
Sbjct: 83  YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFA 142

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           EM       +  T A++L  C R+  +  G  IH  IVK   + ++FV ++L++MYAK G
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 202

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            ++ A  +F+ + ERDVVS  +IIA Y Q      A   F  +   G+ P+ +T  SL +
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
            ++ L    + +  H  ++RR       ++ N+++DMY+K G ++ A  +F+ +P +  I
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFY-AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAI 321

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SWN ++ GY+++GL  E +E+F++M +   + P+  T +++L   SH      G+ I   
Sbjct: 322 SWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNI--- 378

Query: 359 VIKNCLCFDVFVA------------TCLVDMYGKCGRIDDAMSLFYQVP 395
                  FD  VA             C+VDM G+ GRID+A     ++P
Sbjct: 379 -------FDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMP 420



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 179/364 (49%), Gaps = 31/364 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MIS Y + G  SEA+  F +   + G +P+ +TF  VL +C     L  GK+IH  ++K 
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDG-KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++  +FV +SLL MY + G    AR++F+ +P RD  S  A+I+GY Q G   EAL++ 
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 242

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             +  EG+S + +T AS+L   +    +  G   H ++++  L F   + N+LI+MY+K 
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 302

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G + +A R+FD M ER  +SWN+++  Y +          F  M+ +  ++PD +TL+++
Sbjct: 303 GNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 362

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG------------NAVVDMYAKLGIINS 284
                 L+ C      HG +   G  + D ++               +VDM  + G I+ 
Sbjct: 363 ------LSGCS-----HGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDE 411

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAY 343
           A    + +P K        + G  +  L+ +  E   +     EI P N G YV +   Y
Sbjct: 412 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGE--SVGRRLIEIEPENAGNYVILSNLY 469

Query: 344 SHVG 347
           +  G
Sbjct: 470 ASAG 473


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/690 (36%), Positives = 378/690 (54%), Gaps = 18/690 (2%)

Query: 25  SGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +G+     ++  + +AC   ++L DG+  H  + +       F+  S+L MYC+ G    
Sbjct: 4   AGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLAD 63

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           ARK+FD+M  R+  SWN +IS Y ++G   +   +   M       +  T    L     
Sbjct: 64  ARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLN 123

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G  IH + ++ GL  N  V+  + NMY K G +  A  VF++M E++ V+W  I
Sbjct: 124 PSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGI 183

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +  Y Q+   + A   F  M   G++ D      +    A L +    R +HG I++ G 
Sbjct: 184 MVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLG- 242

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
              +V +G  +VD Y K   + SA   FE +   + +SW+ LITGY Q G   EA++ F+
Sbjct: 243 LESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFE 302

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            +     ++ N  TY SI  A S +     G + HA  IK+ L       + ++ MY +C
Sbjct: 303 SLR-TRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRC 361

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GR+D A  +F  +    +V W AII+ +   G   +AL  FR+M D GVRP+ +TF+++L
Sbjct: 362 GRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVL 421

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           TACSHSGLV EG++Y   M   +G+   + HY CMVD++ RAG L  A   I++MP  PD
Sbjct: 422 TACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPD 481

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A  W  LLG C  + N+E+G +A++ LF++D E+   Y+LM N+YA+ GKW+    VR +
Sbjct: 482 AMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKM 541

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
             +R L+K    S I V  KV  F  G++ HP+ E+IY +L  L   +     + +++ +
Sbjct: 542 MAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSV-----IKEETGL 596

Query: 622 LQDVEED------EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           L   EED      E++  L  HSERLA+AFG+IS+P  +P+ +FKNLR C DCH++ K +
Sbjct: 597 L--TEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQV 654

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S IT REI+VRDS RFHHFK G CSC DYW
Sbjct: 655 SLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 25/316 (7%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           Y +  R  +A+  F +  +  G+  D Y F  VLKAC  L +   G++IH  ++KLG E 
Sbjct: 187 YTQAERQMDALALFAKM-VNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLES 245

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +V V   L+  Y +      A K F+ +   +  SW+A+I+GYCQ G   EAL   + +R
Sbjct: 246 EVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLR 305

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              V ++  T  SI   C+   +  SG   H   +K  L       + +I MY++ G + 
Sbjct: 306 TRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLD 365

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
           +A RVF+ + + D V+W +IIA Y    +   A   F  MQ  G++P+ +T +++     
Sbjct: 366 YATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAV----- 420

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV----------VDMYAKLGIINSACAVFEG 291
            L  C +S    G ++    ++E +     V          VD+Y++ G +  A  +   
Sbjct: 421 -LTACSHS----GLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRS 475

Query: 292 LPVK-DVISWNTLITG 306
           +P   D +SW  L+ G
Sbjct: 476 MPFSPDAMSWKCLLGG 491


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 360/584 (61%), Gaps = 9/584 (1%)

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           G+  D  T   I+  C+   +   G+ IH  +VK G +  +F+SN+LI MY K      +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            +VFD+M +++ VSW++II A  Q +        F  M   G +P    +++  + V   
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSH 124

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            +  +   V+  ++  G    D  + +A   M+A+ G +  A  +F+G+  KD+++W T 
Sbjct: 125 EEADD---VYRVVVENGLDF-DQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I  Y +  +  EA+ + + M     I P+  T + ++ A S + + +    +H  +I   
Sbjct: 181 IEAYVKADMPLEALGLLKQMM-LQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTG 238

Query: 364 LCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
             ++  +A  T L+D+Y KCG +  A  +F  +   + + W+A+IS +G+HG G +ALN 
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F QM    V+PDHITFVS+L+ACSHSGLV+EG   F+ M  +FG+ P  +HY CMVD+ G
Sbjct: 299 FDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILG 357

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG L  A +FI+ MPVRP+A++WGALLGACRIH N++L  + +  LF++D  N G YV+
Sbjct: 358 RAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVI 417

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           + NIY   GK +  D +R+L ++RG+KK  G+S IE+ NK+  F  G+R+HP+ + IY E
Sbjct: 418 LYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSE 477

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  +++  GY PD +FVL DV+E+ KE +L  HSE+LAI FG+++  P S I+I KN
Sbjct: 478 LERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKN 537

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LRVCGDCH  TKFIS++T REI+VRD++RFHHFK+G CSC DYW
Sbjct: 538 LRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 222/415 (53%), Gaps = 20/415 (4%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L  G++PD +TFP ++KAC   R+   G +IH  V+K G++  VF++ SL+ MY +    
Sbjct: 2   LRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKY 61

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
            ++R++FD+MP +++ SW+A+I    Q     E   +  +M  EG       + + +  C
Sbjct: 62  ELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-AC 120

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
            RS        ++  +V++GL+F+  V +    M+A+ G +  A ++FD +M +D+V+W 
Sbjct: 121 VRSHEEADD--VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWA 178

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           + I AY +++ P+ A G    M   GI PD +TL+ +    + L   + +  VHG I   
Sbjct: 179 TTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTG 238

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
            ++ + + +  A++D+Y K G +  A  VF+G+  +++I+W+ +I+GY  +G   EA+ +
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA------TC 373
           F  M+    + P+  T+VSIL A SH G + +G +       N +  D  V        C
Sbjct: 299 FDQMKA--SVKPDHITFVSILSACSHSGLVAEGWECF-----NSMARDFGVTPRPEHYAC 351

Query: 374 LVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           +VD+ G+ G++D+A     ++P R ++  W A++    IH   D A    R + D
Sbjct: 352 MVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFD 406



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 175/363 (48%), Gaps = 23/363 (6%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASL 69
           R  E    F Q  L+ G RP        +   R+  +   ++  V++ G ++D  V ++ 
Sbjct: 91  RCKEGFSLFRQM-LSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAA 149

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
             M+ R G   VARKLFD +  +D  +W   I  Y ++   +EAL +L +M L+G+  D 
Sbjct: 150 AGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDA 209

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFGMMRHALRVF 187
           IT+  ++  C+   +     ++H  I+  G  +N  L V   LI++Y K G + +A +VF
Sbjct: 210 ITLLGVIRACSTLASFQLAHIVH-GIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVF 268

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS------IVA 241
           D M ER++++W+++I+ Y        A   F  M +A ++PD +T VS+ S      +VA
Sbjct: 269 DGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVA 327

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISW 300
           +  +C NS +    +  R            +VD+  + G ++ AC   E +PV+ +   W
Sbjct: 328 EGWECFNSMARDFGVTPRPEHYA------CMVDILGRAGKLDEACDFIERMPVRPNAAVW 381

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARV 359
             L+ G  +  L  +  E+  +     +++P N G YV +   Y+  G  ++   I   +
Sbjct: 382 GALL-GACRIHLNVDLAEM--VARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRT-L 437

Query: 360 IKN 362
           +KN
Sbjct: 438 MKN 440



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           ML  G++PD+ TF  ++ ACS       G R  H    +FG +  +     ++ ++G+  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIR-IHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGAC 512
              ++      MP + +A  W A++GAC
Sbjct: 60  KYELSRQVFDEMPDK-NAVSWSAIIGAC 86


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/657 (38%), Positives = 378/657 (57%), Gaps = 41/657 (6%)

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           LFD +P  D  +W  +ISG+ Q G   +A+DI   +    V  D   + S+   CA S +
Sbjct: 33  LFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGD 92

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           ++    IH   ++ G   +L + N LI+M+ K   +  A  VFD M+ +DVVSW S+   
Sbjct: 93  LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYC 152

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y            F  M   GI+ + LT+ S+    A     +  R VHGFI+R    ME
Sbjct: 153 YVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNE--ME 208

Query: 265 -DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY---------------- 307
            +V + +A+V+MYA    +  A  VF+ +  +D++SWN ++T Y                
Sbjct: 209 GNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQM 268

Query: 308 -------------------AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
                               QNG    A+ +   M++   I PN+ T VS LP  +++ +
Sbjct: 269 RKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSG-IKPNRITIVSALPGCTNLES 327

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           LR G +IH  V ++    DV + T LV +Y KCG ++ +  +F  +PR   V WN +I  
Sbjct: 328 LRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMA 387

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           + +HG+G ++L  F +MLD GV P+ +TF+ +L+ CSHS L  EG   F+ M  E  I P
Sbjct: 388 NSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITP 447

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
              HY CMVD+  RAG L  A++FI+ MP+ P A+ WGALLGACR++ N+ELG +A+ +L
Sbjct: 448 DADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQL 507

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
           FE++ +N G YVL+SNI     KW    E+R + RD+GL KTPG S ++V NKV  F TG
Sbjct: 508 FEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTG 567

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
           ++++ + + IY  L  +  KM+  GY P+  FVLQ+V+++++E  L SHSERLA+AFGI+
Sbjct: 568 DKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGIL 627

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +S  K+ +++FKNLR+CGDCHN  K I++I   +IIVRDS RFHHF+DG C+C D+W
Sbjct: 628 NSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 223/434 (51%), Gaps = 44/434 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +IS + + G   +A+D  Y   L+  +RPD +    V KAC    +LV  KKIH   ++ 
Sbjct: 48  LISGHTQHGFPKKAID-IYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQF 106

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ +  +L+ M+ +    N AR +FDDM V+D  SW +M   Y   G   + + + 
Sbjct: 107 GFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLF 166

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L G+  + +TV+SILP CA  D I  G  +H +I+++ +E N++VS+ L+NMYA  
Sbjct: 167 REMGLNGIRANSLTVSSILPACA--DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASS 224

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAY-------------------------------- 205
             ++ A  VFD M  RD+VSWN ++ AY                                
Sbjct: 225 LGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAI 284

Query: 206 ---EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
               Q+     A G    MQ +GI+P+ +T+VS       L   R  + +HG++ R  WF
Sbjct: 285 SGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRH-WF 343

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           +EDV I  A+V +YAK G +  +  VF  +P KDV++WNT+I   + +G   E++ +F  
Sbjct: 344 IEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNK 403

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLCFDVFVATCLVDMYGKC 381
           M +   + PN  T++ +L   SH     +G+ + ++   ++ +  D    +C+VD+  + 
Sbjct: 404 MLDSG-VEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRA 462

Query: 382 GRIDDAMSLFYQVP 395
           GR+++A     ++P
Sbjct: 463 GRLEEAYDFIRKMP 476



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 185/390 (47%), Gaps = 51/390 (13%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           S  LI      G ++ AL +FD++ E D+ +W  +I+ + Q   P  A   ++T+    +
Sbjct: 14  SIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV 73

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD   L+S+    A   D   ++ +H   ++ G F +D+++GNA++DM+ K   +N A 
Sbjct: 74  RPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFG-FNKDLVLGNALIDMFGKCKFVNGAR 132

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+ + VKDV+SW ++   Y   G+  + I +F+ M   N I  N  T  SILPA +  
Sbjct: 133 CVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTVSSILPACADY 191

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG-----KCGRI----------------- 384
             ++ G ++H  +++N +  +V+V++ LV+MY      K  R+                 
Sbjct: 192 --IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVML 249

Query: 385 ---------DDAMSLFYQVPRS----SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
                    +  + LF+Q+ +     +   WNA IS    +GQ + AL    +M D G++
Sbjct: 250 TAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIK 309

Query: 432 PDHITFVSLLTACSH-----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           P+ IT VS L  C++      G    G  + H   E+  I   L      V L+ + G L
Sbjct: 310 PNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTAL------VLLYAKCGDL 363

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++ +    MP R D   W  ++ A  +HG
Sbjct: 364 ELSRHVFNTMP-RKDVVAWNTMIMANSMHG 392



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 156/337 (46%), Gaps = 49/337 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLGF 59
           M   YV CG   + +  F +  L +G+R +  T   +L AC + +  G+++H  +L+   
Sbjct: 149 MTYCYVNCGMCRQGILLFREMGL-NGIRANSLTVSSILPACADYIKLGREVHGFILRNEM 207

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD-------------------------- 93
           E +V+V+++L++MY        AR +FD M  RD                          
Sbjct: 208 EGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQ 267

Query: 94  ---------SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
                      SWNA ISG  Q+G    AL IL +M+  G+  + IT+ S LP C   ++
Sbjct: 268 MRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLES 327

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +  G  IH Y+ +H    ++ ++  L+ +YAK G +  +  VF+ M  +DVV+WN++I A
Sbjct: 328 LRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMA 387

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR-SVHGFIMRRGWFM 263
                    +   F  M  +G++P+ +T + +      L+ C +S+ +  G ++      
Sbjct: 388 NSMHGKGGESLILFNKMLDSGVEPNSVTFIGV------LSGCSHSQLADEGLLVFNSMSS 441

Query: 264 EDVIIGNA-----VVDMYAKLGIINSACAVFEGLPVK 295
           E  I  +A     +VD+ ++ G +  A      +P++
Sbjct: 442 EHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/668 (37%), Positives = 376/668 (56%), Gaps = 17/668 (2%)

Query: 47  GKKIHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+ +H  ++K L      F+A  L++MY +      AR +    P R+  SW +++SG  
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLA 84

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q+G+   AL    EMR EGV+ +  T   +    A     ++G  IH   VK G   ++F
Sbjct: 85  QNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVF 144

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +  +MY K  +   A ++FD++ ER++ +WN+ I+       P  A   F   ++ G
Sbjct: 145 VGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIG 204

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNS------RSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            QP+ +T          LN C +         +HG + R G F  DV + N ++D Y K 
Sbjct: 205 GQPNSITFCGF------LNACSDGLLLDLGMQMHGLVFRSG-FDTDVSVYNGLIDFYGKC 257

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
             I S+  +F  + +K+ +SW +L+  Y QN    E   V  +      +  +     S+
Sbjct: 258 KQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNH-EDEKASVLYLRSRKEIVETSDFMISSV 316

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A + +  L  G  IHA  +K C+  ++FV + LVDMYGKCG I+D+   F ++P  + 
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGV--RPDHITFVSLLTACSHSGLVSEGQRYF 457
           V  N++I  +   GQ D AL  F  M   G    P+++TFVSLL+ACS +G V  G + F
Sbjct: 377 VTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIF 436

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             M+  +GI+P  +HY C+VD+ GRAG +  A  FI+ MP++P  S+WGAL  ACR+HG 
Sbjct: 437 DSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGK 496

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
             LG +A++ LF++D ++ G +VL+SN +A  G+W   + VR   +  G+KK  G+S I 
Sbjct: 497 PHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWIT 556

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
           V N+V  F   +R+H   ++I   L  L  KM++ GY PD    L D+EE+EK   ++ H
Sbjct: 557 VKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHH 616

Query: 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           SE+LA+AFG+++ P   PI+I KNLR+CGDCH++ KF+S   +REIIVRD+NRFH FKDG
Sbjct: 617 SEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDG 676

Query: 698 ICSCGDYW 705
           ICSC DYW
Sbjct: 677 ICSCKDYW 684



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/431 (30%), Positives = 217/431 (50%), Gaps = 30/431 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S   + G  S A+  F++     G+ P+ +TFP V KA  +L   V GK+IH   +K 
Sbjct: 79  LVSGLAQNGHFSTALFEFFEMR-REGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKC 137

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  S   MYC+  L + ARKLFD++P R+  +WNA IS     G   EA++  
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAF 197

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R  G   + IT    L  C+    +  G+ +H  + + G + ++ V N LI+ Y K 
Sbjct: 198 IEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKC 257

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R +  +F +M  ++ VSW S++AAY Q+++   A   +   ++  ++     + S+ 
Sbjct: 258 KQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVL 317

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +      RS+H   + +     ++ +G+A+VDMY K G I  +   F+ +P K++
Sbjct: 318 SACAGMAGLELGRSIHAHAV-KACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEE--CNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++ N+LI GYA  G    A+ +F+ M    C    PN  T+VS+L A S  GA+  G+KI
Sbjct: 377 VTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPA-PNYMTFVSLLSACSRAGAVENGMKI 435

Query: 356 HARVIKNCLCFDVFVAT-----------CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WN 403
                     FD   +T           C+VDM G+ G ++ A     ++P   ++  W 
Sbjct: 436 ----------FDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWG 485

Query: 404 AIISCHGIHGQ 414
           A+ +   +HG+
Sbjct: 486 ALQNACRMHGK 496


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 353/574 (61%), Gaps = 2/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           V  IL +CA+   +L G   H  I+  GL+ +L  SN LINMY+K G +  A +VFD+M 
Sbjct: 67  VHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMP 126

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            R +VSWN++I +  Q+ +   A      MQ+ G      T+ S+    A        + 
Sbjct: 127 SRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQL 186

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H F ++    + +V +  A++D+YAK G++  A  VFE +P + V++W+++  GY QN 
Sbjct: 187 LHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNE 245

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           +  +A+ +F+   E   +  +Q    S++ A + + A+ +G +++A + K+  C ++FVA
Sbjct: 246 MYEQALALFRKAWETG-LKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVA 304

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+DMY KCG I+++  +F  V + + V WNA+IS    H +  + +  F +M   G+ 
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TFVS+L+AC H GLV +GQ+YF +M +E  + P++ HY CMVD   RAG +  A++
Sbjct: 365 PNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYD 424

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I  +P    AS+WG+LL +CR HGN+EL  VA+ +LF+++  N G Y+L+SN+YA  GK
Sbjct: 425 LISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGK 484

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W+ V ++R L ++  +KK  G S IE+ +KV +F  G R HPK  +IY +L  +  +++ 
Sbjct: 485 WDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQK 544

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
           LGY  +    L  V E  K+ +L  HSE+LA   G++  PP +PI+I KNLR+CGDCH++
Sbjct: 545 LGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K  S+   R++IVRD+NRFHHFK+G CSCGD+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 223/396 (56%), Gaps = 7/396 (1%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +LK C   + L+ GK  H  +L +G + D+  +  L++MY + G  + AR++FD+MP R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SWN MI    Q+G   EALD+L +M+ EG      T++S+L  CA    +    L+H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           + +K  ++ N+FV+  L+++YAK G+M+ A+ VF+ M +R VV+W+S+ A Y Q+     
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F    + G++ D   + S+    A L      + V+  + + G F  ++ + ++++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSG-FCSNIFVASSLI 308

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYAK G I  +  VF  +  ++V+ WN +I+G +++  + E + +F+ M++   ++PN 
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG-LSPND 367

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T+VS+L A  H+G +++G K    + K + L  +VF  +C+VD   + G+I +A  L  
Sbjct: 368 VTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 393 QVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLD 427
           ++P ++S   W ++++    HG  + A    +++ D
Sbjct: 428 KLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/686 (36%), Positives = 402/686 (58%), Gaps = 25/686 (3%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           G+RPD + +P ++K+  N   G   H  VLKLG   D FV  +++ MY R G    ARK+
Sbjct: 95  GVRPDAFVYPILIKSAGN--GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKV 152

Query: 86  FDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           FD++P   R    WNAM+SGY +  +  +A  + D M    V    IT  +++   A+  
Sbjct: 153 FDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVK 208

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM----MERDVVSWN 199
           ++ +       +     E ++   N +++ YA+ G+    LR+FD+M    +E D  +W 
Sbjct: 209 DLEAARRYFDCMP----ERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWV 264

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+A     DP  A     T+ Q  IQ +     +L  + A+      +R +   +   
Sbjct: 265 TVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDEL--- 321

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G +  + +  NA++  Y ++G ++SA  +F  +P ++V++WN++I GYAQNG ++ AIE+
Sbjct: 322 GAY-RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 380

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M    ++ P++ T VS++ A  H+GAL  G  +   + +N +   +     ++ MY 
Sbjct: 381 FKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYS 440

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +CG ++DA  +F ++     V +N +IS    HG G +A+N    M + G+ PD +TF+ 
Sbjct: 441 RCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIG 500

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +LTACSH+GL+ EG++ F  +++     P + HY CMVDL GR G L  A   ++ MP+ 
Sbjct: 501 VLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPME 555

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P A ++G+LL A RIH  +ELG +A+++LFE++ +N G ++L+SNIYA+ G+W+ V+ +R
Sbjct: 556 PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIR 615

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
              +  G+KKT GWS +E   K+  F   +R+H + + IY  L  L  KM+  GY+ DKS
Sbjct: 616 EAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKS 675

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            VL+DVEE+EKE I+ +HSE+LAI + ++ S   + I++ KNLRVC DCH   K IS++ 
Sbjct: 676 CVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLE 735

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            R IIVRD+NRFH F DG+CSC DYW
Sbjct: 736 GRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 159/337 (47%), Gaps = 54/337 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG-------KKIHCS 53
           M+S Y + G L+E V   +   + +G+ PD  T+  V+ AC +  D        + +H  
Sbjct: 231 MLSGYAQNG-LAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD------------------------- 88
            ++L    + FV  +LL MY + G    AR++FD+                         
Sbjct: 290 QIQL----NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDS 345

Query: 89  -------MPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCA 140
                  MP R+  +WN+MI+GY Q+G +  A+++  EM   + ++ D +T+ S++  C 
Sbjct: 346 ARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 405

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               +  G  +  ++ ++ ++ ++   N +I MY++ G M  A RVF +M  RDVVS+N+
Sbjct: 406 HLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 465

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I+ +      + A    +TM++ GI+PD +T + + +  +        R V   I    
Sbjct: 466 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI---- 521

Query: 261 WFMEDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK 295
              +D  I +   +VD+  ++G +  A    E +P++
Sbjct: 522 ---KDPAIDHYACMVDLLGRVGELEDAKRTMERMPME 555



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y + G+ + A++ F +      L PD  T   V+ AC +L    ++   V++   E
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL-GALELGNWVVRFLTE 422

Query: 61  WDVFVAAS----LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
             + ++ S    ++ MY R G    A+++F +M  RD  S+N +ISG+   G+ VEA+++
Sbjct: 423 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 482

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           +  M+  G+  D +T   +L  C+ +  +  G  +   I    ++        ++++  +
Sbjct: 483 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYAC----MVDLLGR 538

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A R  ++M ME     + S++ A
Sbjct: 539 VGELEDAKRTMERMPMEPHAGVYGSLLNA 567


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 354/576 (61%), Gaps = 7/576 (1%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +  +L    RS ++L G  IH +I+K GL+    V + LIN Y+K  +   + +VF++  
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            +   +W+S+I+++ Q+ +P+ A  +F  M    + PD     S T   A L  C   +S
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS 176

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH  +++ G+ + DV +G+++VDMYAK G I  A  VF+ +P ++V+SW+ +I GY Q G
Sbjct: 177 VHCLVIKTGYDV-DVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLG 235

Query: 312 LASEAIEVFQ--MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
              EA+ +F+  ++E    ++ N  T  S++        L  G +IH    K       F
Sbjct: 236 EHEEAMRLFKEALLEG---LDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGF 292

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V + L+ +Y KCG I+ A  +F +VP  +   WNA++     H    +A + F +M + G
Sbjct: 293 VGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAG 352

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           +RP+ ITF+ +L ACSH+GLV EG++YF +M++ + I+P  +HY  MVDL GRAG L  A
Sbjct: 353 MRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEA 411

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
            + I+ MP  P  S+WGA +  CRIHGN +L A A+D++FE+ + + G +V++SN YA  
Sbjct: 412 LSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAA 471

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G++E   + R + RDRG+KK  G S IE  N+V  F  G+R H + ++IY +L +L  +M
Sbjct: 472 GRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEM 531

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GYV D SFVL++V  +EK   +  HSERLAIAFG+IS P   PI+I KNLRVCGDCH
Sbjct: 532 ERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCH 591

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           N  KFIS+++ R IIVRD+NRFH F+DG CSC DYW
Sbjct: 592 NAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 192/378 (50%), Gaps = 3/378 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L+ G++IH  ++K G +    V   L++ Y +  L  ++ ++F++   + S +W+++I
Sbjct: 68  RSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVI 127

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           S + Q+   V A+     M  E +  D     S    CA       G  +H  ++K G +
Sbjct: 128 SSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYD 187

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV ++L++MYAK G ++ A  VFD+M  R+VVSW+ +I  Y Q  +   A   F   
Sbjct: 188 VDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEA 247

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
              G+  +  TL S+  +          + +HG   +  + +    +G++++ +Y+K G+
Sbjct: 248 LLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSG-FVGSSLISLYSKCGL 306

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  A  VF+ +P+K++  WN ++   AQ+    EA ++F  ME    + PN  T++ +L 
Sbjct: 307 IEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAG-MRPNFITFLCVLY 365

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           A SH G + +G K  A + K  +         +VD+ G+ G++ +A+S+   +P   +  
Sbjct: 366 ACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTES 425

Query: 402 -WNAIISCHGIHGQGDKA 418
            W A I+   IHG  D A
Sbjct: 426 VWGAFITGCRIHGNTDLA 443



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 170/333 (51%), Gaps = 9/333 (2%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           L PD + FP   KAC  L     GK +HC V+K G++ DVFV +SL+ MY + G    AR
Sbjct: 151 LCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEAR 210

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD+MP R+  SW+ MI GY Q G   EA+ +  E  LEG+ ++  T++S++ VC  + 
Sbjct: 211 NVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSAT 270

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G  IH    K   + + FV ++LI++Y+K G++  A RVFD++  +++  WN+++ 
Sbjct: 271 LLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLI 330

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A  Q      A   FT M+ AG++P+ +T + +    +        +    F + + + +
Sbjct: 331 ACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKY--FALMKKYEI 388

Query: 264 EDVIIGNA-VVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLASEAIEVFQ 321
           E      A +VD+  + G +  A +V +G+P +   S W   ITG   +G    A     
Sbjct: 389 EPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAAD 448

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
            + E   +  + G +V +  AY+  G      K
Sbjct: 449 KVFELGAV--SSGLHVMLSNAYAAAGRYEDAAK 479



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 1/197 (0%)

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
           G    +L + +   +L +G +IHA +IK+ L     V   L++ Y K      +  +F +
Sbjct: 55  GHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEE 114

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
             R SS  W+++IS    + +   A+ +F +M+ E + PD   F S   AC+  G    G
Sbjct: 115 SERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVG 174

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
            +  H +  + G    +     +VD++ + G +  A N    MP R   S  G + G  +
Sbjct: 175 -KSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQ 233

Query: 514 IHGNMELGAVASDRLFE 530
           +  + E   +  + L E
Sbjct: 234 LGEHEEAMRLFKEALLE 250



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASL 69
           EA D F +    +G+RP+F TF  VL AC +   + +GKK    + K   E      AS+
Sbjct: 340 EAFDLFTKME-NAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASM 398

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGS-WNAMISGYCQSGNA 110
           + +  R G    A  +   MP   + S W A I+G    GN 
Sbjct: 399 VDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNT 440


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 357/574 (62%), Gaps = 3/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + ++L    RS ++  GL +H +I+K GL+    VS+NLIN+Y+K  +   +L+VFD+  
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++   +W+S+I+A+ Q+  P+ A  FF  M   G++PD     S T     L      +S
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH   ++ G++  DV +G+++VDMYAK G I  A  +F+ +P ++V+SW+ +I GYAQ  
Sbjct: 148 VHCLAVKTGYYC-DVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLD 206

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +F+      +++ N  T+ S++   S    L  G  IH   +K       FV 
Sbjct: 207 DGVEALTLFKQ-ALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVG 265

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+ +Y KCG I+ A  +F ++P  +   WN+++     H    +    F +M + G++
Sbjct: 266 SALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ I F+S+L ACSH+GLV +G+ YF +M++ +GI+P  +HY  +VDL GRAG L  A +
Sbjct: 326 PNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I+ MP+RP  S+WGALL  CRIH + E+ A  +DR+ E+DS + G +VL+SN YA  G+
Sbjct: 385 VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGR 444

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +E    +R + RDRG+KK  G S +E  NKV  F  G+R+H K+ +IY++L  L  +M+ 
Sbjct: 445 YEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEK 504

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GYV D SFVL+ V+ +EK   +  HSERLAIAFG+I+ PP  PI++ KNLRVCGDCH  
Sbjct: 505 AGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAA 564

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KF+S+   R +IVRD+NRFH F+DG CSCGDYW
Sbjct: 565 IKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L  G ++H  +LK G +    V+ +L+++Y +  L   + ++FD+ P + S +W+++I
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA---RSDNILSGLLIHLYIVKH 158
           S + Q+   + AL     M  +GV  D     S    C    RSD    G  +H   VK 
Sbjct: 99  SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD---VGKSVHCLAVKT 155

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G   ++FV ++L++MYAK G +  A  +FD+M ER+VVSW+ +I  Y Q +D + A   F
Sbjct: 156 GYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
                  +  +  T  S+  + +        + +HG  ++   F     +G+A++ +Y+K
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMS-FDSSSFVGSALISLYSK 274

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G+I  A  VF+ +P +++  WN+++   AQ+        +F+ M     + PN   ++S
Sbjct: 275 CGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVG-MKPNFIXFLS 333

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RS 397
           +L A SH G + +G +  + +    +  +      LVD+ G+ G++ +A+S+  Q+P R 
Sbjct: 334 VLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRP 393

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           +   W A+++   IH   + A     ++L+       +  V L  A + +G   E  R  
Sbjct: 394 TESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGL-HVLLSNAYAAAGRYEEAARMR 452

Query: 458 HMMQEEFGIK 467
            M+++  G+K
Sbjct: 453 KMLRDR-GVK 461



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F++  L  G+RPD + +P   KAC   R    GK +HC  +K G+  DVFV +SL+ MY 
Sbjct: 113 FFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYA 172

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    AR LFD+MP R+  SW+ MI GY Q  + VEAL +  +  +E V ++  T +S
Sbjct: 173 KCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++ VC+ S  +  G LIH   +K   + + FV + LI++Y+K G++  A +VFD++  R+
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +  WNS++ A  Q        G F  M   G++P+ +  +S+    +        R    
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREY-- 350

Query: 255 FIMRRGWFMEDVIIGNA-VVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGL 312
           F + R + +E      A +VD+  + G +  A +V + +P++   S W  L+TG   +  
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKD 410

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              A  V   + E +  + + G +V +  AY+  G   +  ++
Sbjct: 411 TEMAAFVADRILEMD--SSSSGLHVLLSNAYAAAGRYEEAARM 451



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
            S AI+  Q     N    N     ++L +++   +LRQG+++HA ++K  L     V+ 
Sbjct: 5   TSTAIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSH 64

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+++Y K      ++ +F + P+ SS  W+++IS    +     AL FFR+ML++GVRP
Sbjct: 65  NLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP 124

Query: 433 DHITFVSLLTACSHSGLV--SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           D   + S   AC   G +  S+  +  H +  + G    +     +VD++ + G +G A 
Sbjct: 125 DDHIYPSATKAC---GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDAR 181

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGY----YVLMSNI 545
           +    MP R   S  G + G  ++   +E   +    L E VD  +  +     V  S+ 
Sbjct: 182 HLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSST 241

Query: 546 YANVGK 551
           +  +GK
Sbjct: 242 FLELGK 247


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 341/617 (55%), Gaps = 72/617 (11%)

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G+  + FV+++L++ Y +FG    A  V D M  R VV W+++IAA+    D   A G  
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 219 TTMQQAGIQPDLLTLVSLTS-----------------------------------IVAQL 243
             M+  G++P+++T   L S                                    V  +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
            D      +HG++++ G  + D  +  A++DMY K G  +    VF+     DV S N L
Sbjct: 170 GDVAVGEQLHGYVVKAGCRL-DACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228

Query: 304 ITGYA-----------------------------------QNGLASEAIEVFQMMEECNE 328
           + G +                                   QNG   EA+++F+ M+    
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQS-EG 287

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           I PN  T   +LPA++++ AL  G   H   ++     D++V + LVDMY KCGR+ DA 
Sbjct: 288 IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDAR 347

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  +P  + V WNA+I  + +HG+ + A+  FR M     +PD +TF  +L ACS +G
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
              EG+ YF+ MQ + GI P ++HY CMV L GRAG L  A++ I  MP  PD  IWG+L
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LG+CR+HGN+ L  VA++ LF+++ EN G YVL+SNIYA+   W+GV+ +R + +  GLK
Sbjct: 468 LGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLK 527

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K  G S IE+ NKV +   G+ +HP    I ++L++LT +M+ LG+ P   +VL DVEE 
Sbjct: 528 KEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQ 587

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK+ IL+ HSE+LA+A G+IS+   +P+Q+ KNLR+CGDCH   KFIS    REI VRD+
Sbjct: 588 EKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDT 647

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 648 NRFHHFKDGKCSCADYW 664



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 232/523 (44%), Gaps = 87/523 (16%)

Query: 29  PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           PD    P  LK+C  L   + +H +    G   D FVA+SLLH Y RFG    AR + D 
Sbjct: 21  PDPRLLPSALKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSVLDG 80

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS----DN 144
           MP R    W+A+I+ +   G+A  A  +L+ MR +GV  + IT   ++    RS    D 
Sbjct: 81  MPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDA 140

Query: 145 ILS-------------------------------GLLIHLYIVKHGLEFNLFVSNNLINM 173
           +L+                               G  +H Y+VK G   +  V+  LI+M
Sbjct: 141 VLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDM 200

Query: 174 YAKFGMMRHALRVFDQM-----------------------------------MERDVVSW 198
           Y K G     +RVFD+                                    +E +VVSW
Sbjct: 201 YGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSW 260

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
            SI+A   Q+   + A   F  MQ  GI+P+ +T+  +    A +    + RS H F +R
Sbjct: 261 TSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLR 320

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
           +G F  D+ +G+A+VDMYAK G +  A  +FE +P ++V+SWN +I GYA +G A  A+ 
Sbjct: 321 KG-FHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVR 379

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDM 377
           +F+ M+   E  P+  T+  +L A S  G   +G      +  K+ +   +    C+V +
Sbjct: 380 LFRSMQSSKE-KPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTL 438

Query: 378 YGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ----GDKALNFFRQMLDEGVRP 432
            G+ G++DDA  +  Q+P       W +++    +HG        A N F+      + P
Sbjct: 439 LGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQ------LEP 492

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           ++     LL+    S  + +G      M +  G+K   K  GC
Sbjct: 493 ENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLK---KEKGC 532



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 50/387 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S   R GR  +AV    +     G  PD       L A  ++ D   G+++H  V+K 
Sbjct: 127 LVSGLNRSGRARDAVLALVRMH-GEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKA 185

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC------------ 105
           G   D  VA +L+ MY + G A+   ++FD+    D  S NA+++G              
Sbjct: 186 GCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLF 245

Query: 106 -----------------------QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                  Q+G  +EA+D+  EM+ EG+  + +T+  +LP  A  
Sbjct: 246 REFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANI 305

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             ++ G   H + ++ G   +++V + L++MYAK G +R A  +F+ M  R+VVSWN++I
Sbjct: 306 AALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMI 365

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             Y    +   A   F +MQ +  +PDL+T   +    +Q       RS    +  +   
Sbjct: 366 GGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGI 425

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNG---LASEAIE 318
              +     +V +  + G ++ A  +   +P + D   W +L+     +G   LA  A E
Sbjct: 426 SPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAE 485

Query: 319 -VFQMMEECNEINPNQGTYVSILPAYS 344
            +FQ+  E      N G YV +   Y+
Sbjct: 486 NLFQLEPE------NAGNYVLLSNIYA 506


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/683 (36%), Positives = 392/683 (57%), Gaps = 17/683 (2%)

Query: 33  TFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR 92
           +F   +++C++      IH  + + G     ++   L+ M  + G    AR +FD +  +
Sbjct: 46  SFAAAIRSCKDSNSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHK 105

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +  SWN +IS Y   G+   AL +  +M +   +M   T A+ L  C+   ++  G  IH
Sbjct: 106 NIFSWNIIISAYAHRGHPSTALHLFAKMDVPPTAM---TFATALSACSSLGDLQRGREIH 162

Query: 153 LYI-VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS-ND 210
             I    G+  ++ +   + +MYAK G +  A  VFD++  ++VVSWN++IAAY QS + 
Sbjct: 163 ARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHS 222

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFMEDVII 268
              A   F  M + G++P   T V    ++   ND  +   +H  I+  G  + + DV +
Sbjct: 223 HHQALDLFEKMAEHGVRPCRATFVG---VLGACNDVTSLEKIHARIVETGLQFDVRDVGV 279

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            NA+++MYAK G +  A  +F  +  +D +S N +I  +AQ GL  E+I+VF+ M+    
Sbjct: 280 QNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMD-LEG 338

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVI-----KNCLCFDVFVATCLVDMYGKCGR 383
           +  +  T+ S++ A S  GAL  G +IH RV+     + C   +V V T LV MYGKCG 
Sbjct: 339 LPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGT 398

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++ A ++F  +   +SV WNA+++     GQGD+A  F R    EGV  D  +F+S+L A
Sbjct: 399 LEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIA 458

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSHSG++     +F +M  +F + P  ++Y CMVDL  R+G LG A   + +MP  PDA 
Sbjct: 459 CSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAI 518

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
            W  LLG CR+ G++E  A A+++ F ++ +N   Y L+S++Y+  GK + + E+RS  +
Sbjct: 519 AWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMK 578

Query: 564 DRGLKK-TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           +RGL+K  PG S IEV+ +V  F  G+ +HP+ +KI  EL  L  ++K  G+VP    V+
Sbjct: 579 ERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVV 638

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            D++ ++KE IL  HSE+LA+AFG+IS+    P+ + KNLRVC DCH   K IS++  R 
Sbjct: 639 HDLKTEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRV 698

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           I VRD+NRFH F+ G CSCGDYW
Sbjct: 699 ITVRDANRFHRFQSGTCSCGDYW 721



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 166/367 (45%), Gaps = 33/367 (8%)

Query: 1   MISVYVRCGRLS-EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGF 59
           +I+ Y + G    +A+D F +     G+RP   TF  VL AC ++   +KIH  +++ G 
Sbjct: 212 LIAAYAQSGHSHHQALDLFEKMA-EHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGL 270

Query: 60  EWDVF---VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           ++DV    V  +LL+MY + G   VAR +F  M  RD  S N MI+ + Q G   E++ +
Sbjct: 271 QFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQV 330

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-----NLFVSNNLI 171
             EM LEG+  D  T AS++  C+    +  G  IH  +V+  L       N+ V   L+
Sbjct: 331 FREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALV 390

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           +MY K G +  A  VF  M  ++ VSWN+++AA         A  F       G++ D  
Sbjct: 391 SMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSA 450

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA------VVDMYAKLGIINSA 285
           + +S+      L  C +S  +          + D  +  A      +VD+ A+ G +  A
Sbjct: 451 SFISV------LIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDA 504

Query: 286 CAVFEGLPVK-DVISWNTLITGYAQNG----LASEAIEVFQMMEECNEINPNQGTYVSIL 340
             +   +P   D I+W TL+ G    G     AS A + F +  +      N   Y  + 
Sbjct: 505 DELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQ------NTAPYTLLS 558

Query: 341 PAYSHVG 347
             YS  G
Sbjct: 559 SLYSATG 565


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/589 (39%), Positives = 350/589 (59%), Gaps = 3/589 (0%)

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           LD +    ++  P    SI+  CA+S N+     IH ++ +  L  + F+ N+LI+MY K
Sbjct: 50  LDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCK 109

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  VFD +  RDVVSW  +I  Y Q++ P  A G    M +A  +P   T  S 
Sbjct: 110 CGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSF 169

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                          +H   ++     EDV +G+A++DMYA+   ++ A  VF+ L  K+
Sbjct: 170 LKAAGACGGRGIGEQMHALAVKYN-LDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKN 228

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +SWN LI G+A+ G     +  F  M+  N       TY S+  A + +GAL QG  +H
Sbjct: 229 EVSWNALIAGFARKGDGETTLMKFAEMQR-NGFGATHFTYSSVFSALARIGALEQGRWVH 287

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A +IK+      FVA  ++ MY K G + DA  +F +V +   V WN +++    +G G 
Sbjct: 288 AHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGK 347

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F ++   G++ + ITF+S+LTACSH GLV EG++YF MM++ + ++P + HY   
Sbjct: 348 EAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSF 406

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GRAG L  A  F+  MP+ P A++WGALLGACR+H N ++G  A+D +FE+D E+ 
Sbjct: 407 VDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDT 466

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G  VL+ NIYA+ G+W+    VR + +  G+KK P  S +E+ N V +F   + THPK E
Sbjct: 467 GPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSE 526

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY     +  ++K  GYVP+  +VL  ++E E+E  L  HSE++A+AF +I+ P  + I
Sbjct: 527 EIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATI 586

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KN+R+CGDCH+  +++S++ +REI+VRD+NRFHHF +G CSCGDYW
Sbjct: 587 RIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 203/394 (51%), Gaps = 6/394 (1%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           LT  L P    +  ++ AC   +NL   + IH  + +     D F+  SL+HMYC+ G  
Sbjct: 54  LTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAV 113

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + AR +FD +P RD  SW  +I+GY Q+    EAL +L +M          T  S L   
Sbjct: 114 SDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAA 173

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
                   G  +H   VK+ L+ +++V + L++MYA+   M  A+RVFD +  ++ VSWN
Sbjct: 174 GACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWN 233

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++IA + +  D  T    F  MQ+ G      T  S+ S +A++      R VH  +++ 
Sbjct: 234 ALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKS 293

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G  +    + N ++ MYAK G +  A  VF+ +  +D+++WNT++T +AQ GL  EA+  
Sbjct: 294 GQKLT-AFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAH 352

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ + +   I  NQ T++S+L A SH G +++G +    +    +  ++      VD+ G
Sbjct: 353 FEEIRKYG-IQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLG 411

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           + G + +A+   +++P   ++  W A++    +H
Sbjct: 412 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 445


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 348/587 (59%), Gaps = 33/587 (5%)

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           +IH ++++    F++F ++ LI++     ++ +A +VF Q+   ++  +NS I  +  S 
Sbjct: 33  IIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSK 92

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           DP  +  F+   ++ G+ PD LT   L     Q          HG I+R G F  DV + 
Sbjct: 93  DPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHG-FDSDVYVQ 151

Query: 270 NAVVDMYAKLGIINSACAVF-------------------------------EGLPVKDVI 298
           N++V MY+ LG I SA  VF                               + +P K+++
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           +W+ +I+GYA+N    +AIE++ +++    ++ N+   VS++ + +H+GAL  G + H  
Sbjct: 212 TWSVMISGYAKNSFFDKAIELYFLLQS-EGVHANETVMVSVIASCAHLGALELGERAHDY 270

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           +++N +  ++ + T LVDMY +CG ID A+ +F Q+P   ++ W  +I+   +HG  +KA
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L +F +M   G+ P  ITF ++L+ACSH GLV  G   F  M+ ++ I+P L+HYGCMVD
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVD 390

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAG L  A  F+  MP++P+A IWGALLGACRIH N E+   A   L E+  E+ GY
Sbjct: 391 LLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGY 450

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SNIYA   KWE V+ +R + ++RG+ K PG++  E++ KV  F  G++THP+ ++I
Sbjct: 451 YVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQI 510

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
                 +  K++  GY  +    L D++E+EKE  +  HSE+LAIA+ I+ +    PI+I
Sbjct: 511 ERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRI 570

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLRVC DCH  TK IS++ ERE+IVRD NRFHHFK G CSC DYW
Sbjct: 571 VKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/535 (25%), Positives = 249/535 (46%), Gaps = 54/535 (10%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           L++C  L   K IH  +++    +DVF A+ L+ +     L + A ++F  +   +   +
Sbjct: 22  LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIY 81

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N+ I G+  S +  ++     + +  G+  D +T   ++  C +  ++  G+  H  I++
Sbjct: 82  NSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIR 141

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
           HG + +++V N+L+ MY+  G ++ A  VF ++   DVVSW S++A Y +S D  +A   
Sbjct: 142 HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKL 201

Query: 218 FTTM-------------------------------QQAGIQPDLLTLVSLTSIVAQLNDC 246
           F  M                               Q  G+  +   +VS+ +  A L   
Sbjct: 202 FDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGAL 261

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
                 H +I+R    + ++I+G A+VDMYA+ G I+ A  VF+ LP +D +SW TLI G
Sbjct: 262 ELGERAHDYILRNKMTV-NLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAG 320

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           +A +G A +A+E F  ME+   + P + T+ ++L A SH G + +G+++   + ++    
Sbjct: 321 FAMHGYAEKALEYFSRMEKAG-LTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIE 379

Query: 367 DVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQ 424
                  C+VD+ G+ G++ +A     ++P   + P W A++    IH   + A    + 
Sbjct: 380 PRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKT 439

Query: 425 MLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +++  ++P+H  +  LL+   + +      +    MM+E   +KP          LF   
Sbjct: 440 LIE--LKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKP------PGYTLFEMD 491

Query: 484 GHLGMAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           G +   H F       P+      +W  +LG  R+ G         D LF++D E
Sbjct: 492 GKV---HKFTIGDKTHPEIQQIERMWEEILGKIRLAG---YTGNNDDALFDIDEE 540



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 136/277 (49%), Gaps = 45/277 (16%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FY  +  +GL PD  T+P ++KAC    +L  G + H  +++ GF+ DV+V  SL+ MY 
Sbjct: 100 FYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYS 159

Query: 75  -------------------------------RFGLANVARKLFDDMPVRDSGSWNAMISG 103
                                          + G    ARKLFD MP ++  +W+ MISG
Sbjct: 160 TLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISG 219

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++    +A+++   ++ EGV  +   + S++  CA    +  G   H YI+++ +  N
Sbjct: 220 YAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVN 279

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L +   L++MYA+ G +  A+ VFDQ+  RD +SW ++IA +        A  +F+ M++
Sbjct: 280 LILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEK 339

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           AG+ P  +T  ++ S  +           HG ++ RG
Sbjct: 340 AGLTPREITFTAVLSACS-----------HGGLVERG 365


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/565 (41%), Positives = 338/565 (59%), Gaps = 41/565 (7%)

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +S  I   L IH  + +HGL+ +  ++  L   YA  G + +++ +F +     V  W +
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           II  +    D ++A   F TM +        +LVSLT                       
Sbjct: 99  IIHGHALRGDVVSAQQLFDTMPEK-------SLVSLT----------------------- 128

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
                     A++  YAK G +++A  +F+G+  +D + WN +I GY QNG+ +EA+ +F
Sbjct: 129 ----------AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 178

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M +  +  PN+ T +S+L A   +GAL  G  +H+ +  N + F+V V T LVDMY K
Sbjct: 179 RRMLKA-KAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 237

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG ++DA  +F ++     V WN++I  + +HG   +AL  F+ M   G+ P +ITF+ +
Sbjct: 238 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGI 297

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L+AC HSG V+EG   F+ M++E+GI+P ++HYGCMV+L GRAGH+  A+  ++NM + P
Sbjct: 298 LSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 357

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
           D  +WG LLGACR+HG + LG    + L + +  N G Y+L+SNIYA VG W+GV  +R+
Sbjct: 358 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 417

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
           + +D G+KK PG SSIEVNNKV  F  G   HPK ++IY  L  +   +KS GY P    
Sbjct: 418 MMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDI 477

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
           VL D+ E EKE  L  HSE+LAIAFG+I++ P + I+I KNLRVC DCH  TK IS+IT 
Sbjct: 478 VLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITG 537

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           R+I+VRD NRFHHF +G CSCGDYW
Sbjct: 538 RKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 35/298 (11%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            ++L  Y + G  + AR LFD M  RD   WN MI GY Q+G   EAL +   M      
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            + +TV S+L  C +   + SG  +H YI  +G++FN+ V   L++MY+K G +  A  V
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD++ ++DVV+WNS+I  Y        A   F +M + G+ P  +T + +      L+ C
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGI------LSAC 301

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMY----------------AKLGIINSACAVFE 290
            +S          GW  E   I N + D Y                 + G +  A  + +
Sbjct: 302 GHS----------GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 351

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            + ++ D + W TL+     +G  +   ++ +++ + N    N GTY+ +   Y+ VG
Sbjct: 352 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL--ANSGTYILLSNIYAAVG 407



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI  Y + G  +EA+  F +  L +  +P+  T   VL AC  L     G+ +H  +   
Sbjct: 161 MIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 219

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +++V V  +L+ MY + G    AR +FD +  +D  +WN+MI GY   G + EAL + 
Sbjct: 220 GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLF 279

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M   G+    IT   IL  C  S  +  G  I   +  ++G+E  +     ++N+  +
Sbjct: 280 KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 339

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  +   M +E D V W +++ A
Sbjct: 340 AGHVEQAYELVKNMNIEPDPVLWGTLLGA 368


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 360/587 (61%), Gaps = 16/587 (2%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHG--------LEFNLFVSNNLINMYAKFGM 179
           DP+++  ++ +C R      G LIH ++  HG            +FVSN+L++MYAKFG+
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSLTS 238
           +  ALR+FD+M ER+VV+W +++AA   ++     A  F   M + G+ P+  T    +S
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTF---SS 187

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
           ++          ++H   ++ G    DV + ++++D Y KLG ++    VF+ +  +D++
Sbjct: 188 VLGACGTPGVLAALHASTVKVG-LDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLV 246

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            WN++I G+AQ+G    AIE+F  M++    + NQGT  S+L A + +  L  G ++HA 
Sbjct: 247 VWNSIIAGFAQSGDGVGAIELFMRMKDAG-FSANQGTLTSVLRACTGMVMLEAGRQVHAH 305

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           V+K     D+ +   L+DMY KCG ++DA +LF+++P+   + W+ +IS    +G+  +A
Sbjct: 306 VLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEA 363

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L  F  M  EGV P+ IT V +L ACSH+GLV +G  YF  M++ FGI+P  +H+ CMVD
Sbjct: 364 LRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVD 423

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAG L  A  FI++M + PDA IW  LLGACR+H +  L A A+  + +++ ++ G 
Sbjct: 424 LLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGA 483

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
            VL+SN YA++ +W   ++     RDRG+KK PG S IE+   V +F  G+ +HP  + I
Sbjct: 484 RVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTI 543

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
             EL  L  ++ +LGYVP   FVLQD+  ++KE +L  HSE++AIAFG + +    PI+I
Sbjct: 544 VQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRI 603

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLR+CGDCH + K +S+   R II+RD  RFHHF+DG CSCGDYW
Sbjct: 604 MKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 208/378 (55%), Gaps = 17/378 (4%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS-GNAVEALDILDEMR 121
           +FV+ SL+ MY +FGL + A +LFD MP R+  +W  +++    + G   EAL  L  M 
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +GV+ +  T +S+L  C  +  +L+ L  H   VK GL+ ++FV ++LI+ Y K G + 
Sbjct: 175 RDGVAPNAYTFSSVLGACG-TPGVLAAL--HASTVKVGLDSDVFVRSSLIDAYMKLGDLD 231

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
              RVFD+M+ RD+V WNSIIA + QS D + A   F  M+ AG   +  TL S+     
Sbjct: 232 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            +      R VH  +++   +  D+I+ NA++DMY K G +  A A+F  +P +DVISW+
Sbjct: 292 GMVMLEAGRQVHAHVLK---YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWS 348

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           T+I+G AQNG ++EA+ VF +M+    + PN+ T V +L A SH G +  G   + R +K
Sbjct: 349 TMISGLAQNGKSAEALRVFDLMKS-EGVAPNRITMVGVLFACSHAGLVEDGW-YYFRSMK 406

Query: 362 NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
                        C+VD+ G+ G++D+A+     +     +V W  ++    +H  G+ A
Sbjct: 407 KLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466

Query: 419 LNFFRQML-----DEGVR 431
               R++L     D+G R
Sbjct: 467 AYAAREILKLEPDDQGAR 484



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 158/308 (51%), Gaps = 26/308 (8%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           GR  EA+  F       G+ P+ YTF  VL AC        +H S +K+G + DVFV +S
Sbjct: 161 GRKEEALR-FLVAMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSS 219

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y + G  +  R++FD+M  RD   WN++I+G+ QSG+ V A+++   M+  G S +
Sbjct: 220 LIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSAN 279

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+L  C     + +G  +H +++K+  E +L + N L++MY K G +  A  +F 
Sbjct: 280 QGTLTSVLRACTGMVMLEAGRQVHAHVLKY--ERDLILHNALLDMYCKCGSLEDAEALFH 337

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M +RDV+SW+++I+   Q+     A   F  M+  G+ P+ +T+V +      L  C  
Sbjct: 338 RMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGV------LFACS- 390

Query: 249 SRSVHGFIMRRGWFM---EDVIIG--------NAVVDMYAKLGIINSACAVFEGLPVK-D 296
               H  ++  GW+       + G        N +VD+  + G ++ A      + ++ D
Sbjct: 391 ----HAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPD 446

Query: 297 VISWNTLI 304
            + W TL+
Sbjct: 447 AVIWRTLL 454


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/677 (37%), Positives = 386/677 (57%), Gaps = 10/677 (1%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +++ C   +++ D  KI    LK GF   +     L+  Y + G    ARK+FD++P
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R   +WN+MI+ Y ++G + EA+DI   M  +G+  D  T +S+    +    +  G  
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 151 IHLYIVKHGLEF-NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            H   V  G+   N+FV + L++MYAKFG MR A  V DQ++ +DVV + ++I  Y    
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +   +   F  M + GI+ +  TL S+      L D  + R +HG I++ G     V   
Sbjct: 258 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAG-LESAVASQ 316

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            +++ MY + G+++ +  VF+     + ++W ++I G  QNG    A+  F+ M   + I
Sbjct: 317 TSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLR-SSI 375

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN  T  S+L A S +  L QG +IHA V+K  L  D +V   L+D YGKCG  + A S
Sbjct: 376 TPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARS 435

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     V  N++I  +  +G G +AL  F  M D G+ P+++T++ +L+AC+++GL
Sbjct: 436 VFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGL 495

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + EG   F   +    I+    HY CMVDL GRAG L  A   I  + +  D  IW  LL
Sbjct: 496 LEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLL 554

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            ACRIHG++E+     +R+ ++  E+ G +VL+SN+YA+ G W  V E++S  R+  LKK
Sbjct: 555 SACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKK 614

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            P  S ++V  ++  F  G+ +HP +  I ++L  L  K+K LGYVPD  FVLQD++E++
Sbjct: 615 NPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEK 674

Query: 630 KEHILTSHSERLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           K   L  HSE+LA+AF +  S  K + I+I KNLRVCGDCH W KF+S+I  R+II RD 
Sbjct: 675 KIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDV 734

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHF++G+CSCGDYW
Sbjct: 735 KRFHHFRNGLCSCGDYW 751



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 230/434 (52%), Gaps = 12/434 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y+R GR  EA+D  YQ  +  G+ PD +TF  V KA  +L    +G++ H   + L
Sbjct: 147 MIASYIRNGRSKEAID-IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVL 205

Query: 58  GFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G    +VFV ++L+ MY +FG    AR + D +  +D   + A+I GY   G   E+L +
Sbjct: 206 GVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQV 265

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M  +G+  +  T++S+L  C   +++ SG LIH  IVK GLE  +    +L+ MY +
Sbjct: 266 FRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYR 325

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G++  +L+VF Q +  + V+W S+I    Q+     A   F  M ++ I P+  TL S+
Sbjct: 326 CGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSV 385

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               + L      + +H  +M+ G  + D  +G A++D Y K G    A +VF GL   D
Sbjct: 386 LRACSSLAMLEQGKQIHAIVMKFGLDI-DKYVGAALIDFYGKCGSTEIARSVFNGLLEVD 444

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI- 355
           V+S N++I  YAQNG   EA+++F  M++   + PN  T++ +L A ++ G L +G  I 
Sbjct: 445 VVSVNSMIYSYAQNGFGHEALQLFSGMKDTG-LEPNNVTWLGVLSACNNAGLLEEGCHIF 503

Query: 356 -HARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
             AR   N  L  D +   C+VD+ G+ GR+ +A  L  QV  S  V W  ++S   IHG
Sbjct: 504 SSARNSGNIELTKDHY--ACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHG 561

Query: 414 QGDKALNFFRQMLD 427
             + A     +++D
Sbjct: 562 DVEMAKRVMNRVID 575


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/633 (38%), Positives = 372/633 (58%), Gaps = 18/633 (2%)

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILP 137
           N +  L +D+     G+ N +I   C+ GN  +A+ +L          +P   T   ++ 
Sbjct: 37  NPSANLMNDI----KGNNNQLIQSLCKGGNLKQAIHLL------CCEPNPTQRTFEHLIC 86

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            CA+ +++  GL +H  +V  G + + F++  LINMY + G +  A +VFD+  ER +  
Sbjct: 87  SCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYV 146

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT--LVSLTSIVAQLN--DCRNSRSVH 253
           WN++  A             +  M   GI  D  T   V    +V++L+    +  + +H
Sbjct: 147 WNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIH 206

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             I+R G +  ++ +   ++D+YAK G ++ A +VF  +P K+ +SW+ +I  +A+N + 
Sbjct: 207 AHILRHG-YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMP 265

Query: 314 SEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
            +A+E+FQ MM E ++  PN  T V++L A + + AL QG  IH  +++  L   + V  
Sbjct: 266 MKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLN 325

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+ MYG+CG I     +F  +     V WN++IS +G+HG G KA+  F  M+ +G  P
Sbjct: 326 ALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSP 385

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
            +I+F+++L ACSH+GLV EG+  F  M  ++ I P ++HY CMVDL GRA  L  A   
Sbjct: 386 SYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKL 445

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I++M   P  ++WG+LLG+CRIH N+EL   AS  LFE++  N G YVL+++IYA    W
Sbjct: 446 IEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMW 505

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
                V  L   RGL+K PG S IEV  KV  F + +  +P+ E+I+  L  L+ +MK+ 
Sbjct: 506 SEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQ 565

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GYVP  + VL D++E+EKE I+  HSE+LA+AFG+I++     I+I KNLR+C DCH  T
Sbjct: 566 GYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVT 625

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KFIS+   REI+VRD NRFHHFKDG+CSCGDYW
Sbjct: 626 KFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 202/374 (54%), Gaps = 14/374 (3%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   TF  ++ +C    +L DG  +H  ++  GF+ D F+A  L++MY   G  + ARK+
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+   R    WNA+       G   E LD+  +M   G+  D  T   +L  C  S+  
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELS 195

Query: 146 LS----GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           +S    G  IH +I++HG E N+ V   L+++YAKFG + +A  VF  M  ++ VSW+++
Sbjct: 196 VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 202 IAAYEQSNDPITAHGFFTTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           IA + ++  P+ A   F  M  +     P+ +T+V++    A L      + +HG+I+RR
Sbjct: 256 IACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRR 315

Query: 260 GWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
           G  ++ ++ + NA++ MY + G I     VF+ +  +DV+SWN+LI+ Y  +G   +AI+
Sbjct: 316 G--LDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQ 373

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQG-IKIHARVIKNCLCFDVFVATCLVDM 377
           +F+ M      +P+  +++++L A SH G + +G I   + + K  +   +    C+VD+
Sbjct: 374 IFENMIHQGS-SPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDL 432

Query: 378 YGKCGRIDDAMSLF 391
            G+  R+D+A+ L 
Sbjct: 433 LGRANRLDEAIKLI 446



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 12/240 (5%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC-------RNLVDGKKIHCSVLKLG 58
           V CG+  E +D + Q     G+  D +T+  VLKAC         L  GK+IH  +L+ G
Sbjct: 157 VGCGK--ELLDLYVQMNWI-GIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHG 213

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           +E ++ V  +LL +Y +FG  + A  +F  MP ++  SW+AMI+ + ++   ++AL++  
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273

Query: 119 EMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            M LE     P  +T+ ++L  CA    +  G LIH YI++ GL+  L V N LI MY +
Sbjct: 274 LMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGR 333

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +    RVFD M  RDVVSWNS+I+ Y        A   F  M   G  P  ++ +++
Sbjct: 334 CGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITV 393


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/571 (40%), Positives = 351/571 (61%), Gaps = 2/571 (0%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   AR+   + G+  H  I++ GL  +   SN L+NMY+K G++  A ++FD+M  R 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +VSWN+++ ++ Q+ D   A   F  MQ+ G      T+ S+    A        + +HG
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 172

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           F ++      +V +G A++D+YAK G++  A  VFE +P +  ++W++++ GY QN L  
Sbjct: 173 FALKTA-LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE 231

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+ +F   +    +  NQ T  S L A +   AL +G ++ A   K  +  ++FV + L
Sbjct: 232 EALVLFHRAQAMG-LEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 290

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KCG I++A ++F  V   + V WNAI+S    H +  +A+ +F +M   G+ P+ 
Sbjct: 291 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 350

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           IT++S+L+ACSH GLV +G++YF +M     + P++ HY CMVD+ GRAG L  A +FI 
Sbjct: 351 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID 410

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
            MP    AS+WG+LL +CRI+ N+EL  VA+  LFE++  N G +VL+SNIYA   +WE 
Sbjct: 411 RMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEE 470

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
           V   R+L ++   KK  G S IE+ +KV  F  G R HP+  +IY +L +L  +MK +GY
Sbjct: 471 VARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGY 530

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
                  L DVEE  K+ +L  HSE+LA+ FGI+  P  +PI+I KNLR+CGDCH++ K 
Sbjct: 531 KAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKL 590

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            S ITEREIIVRD+NRFHHFK+G CSCG++W
Sbjct: 591 ASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 205/368 (55%), Gaps = 4/368 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R  ++G   H  ++++G   D   +  L++MY + GL   ARKLFD+MPVR   SWN M+
Sbjct: 61  RAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMV 120

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
             + Q+G+  +AL +  +M+ EG S    TV+S++  CA    +     +H + +K  L+
Sbjct: 121 GSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALD 180

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N+FV   L+++YAK G+++ A  VF+ M ER  V+W+S++A Y Q+     A   F   
Sbjct: 181 SNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRA 240

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q  G++ +  T+ S  S  A        + V     + G    ++ + ++++DMYAK GI
Sbjct: 241 QAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG-IGSNIFVISSLIDMYAKCGI 299

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  A  VF  +  K+V+ WN +++G++++  + EA+  F+ M++   I PN  TY+S+L 
Sbjct: 300 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG-ICPNDITYISVLS 358

Query: 342 AYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
           A SH+G + +G K    +I+ + +  +V   +C+VD+ G+ G + +A     ++P  ++ 
Sbjct: 359 ACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATA 418

Query: 401 P-WNAIIS 407
             W ++++
Sbjct: 419 SMWGSLLA 426



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 156/310 (50%), Gaps = 5/310 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  + + G   +A+  F Q     G     +T   V+ AC     + + K++H   LK 
Sbjct: 119 MVGSHTQNGDCEKALVLFMQMQ-KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKT 177

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + +VFV  +LL +Y + GL   A  +F+ MP R   +W++M++GY Q+    EAL + 
Sbjct: 178 ALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLF 237

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              +  G+  +  T++S L  CA    ++ G  +     K G+  N+FV ++LI+MYAK 
Sbjct: 238 HRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKC 297

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A  VF  + E++VV WN+I++ + +    + A  +F  MQQ GI P+ +T +S+ 
Sbjct: 298 GIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVL 357

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  + L      R     ++R      +V+  + +VD+  + G+++ A    + +P    
Sbjct: 358 SACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDAT 417

Query: 298 IS-WNTLITG 306
            S W +L+  
Sbjct: 418 ASMWGSLLAS 427


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/770 (34%), Positives = 407/770 (52%), Gaps = 97/770 (12%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVDG--KKIHCSVLKLGFEW----DVFVAASLLHMYCRF 76
           LTSG +P    FP ++     L+D   K  +    +  F+     D+  A ++L  Y   
Sbjct: 23  LTSGFKP----FPLIIN---RLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAA 75

Query: 77  GLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           G   +A +LF+  P  +RD+ S+NAMI+ +  S +   AL +  +M+  G   DP T +S
Sbjct: 76  GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSS 135

Query: 135 ILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG---------MMRHAL 184
           +L   +  +D       +H  + K G      V N L++ Y             +M  A 
Sbjct: 136 VLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAAR 195

Query: 185 RVFDQMM--ERDVVSWNSIIAAYEQSNDPITAH------------------------GFF 218
           ++FD+     RD  +W +IIA Y +++D + A                         GF+
Sbjct: 196 KLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFY 255

Query: 219 TT-------MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-----RGWFMEDV 266
                    M   GIQ D  T  S+ S  +        R VH +++R      G F+  +
Sbjct: 256 EEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV--L 313

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT------------------------ 302
            + NA++ +Y + G +  A  VF+ +PVKD++SWN                         
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373

Query: 303 -------LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
                  +I+G AQNG   E +++F  M+    + P    Y   + + S +G+L  G ++
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMK-LEGLEPCDYAYAGAIASCSVLGSLDNGQQL 432

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H+++I+      + V   L+ MY +CG ++ A ++F  +P   SV WNA+I+    HG G
Sbjct: 433 HSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHG 492

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +A+  + +ML E + PD ITF+++L+ACSH+GLV EG+ YF  M+  +GI P   HY  
Sbjct: 493 VQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSR 552

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL  RAG    A N  ++MP  P A IW ALL  C IHGNMELG  A+DRL E+  + 
Sbjct: 553 LIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQ 612

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G Y+ +SN+YA +G+W+ V  VR L R+RG+KK PG S IEV N V +F   +  HP+ 
Sbjct: 613 DGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEV 672

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
             +Y  L  L  +M+ LGYVPD  FVL D+E ++KE+ L++HSE+LA+ +GI+  P  + 
Sbjct: 673 HAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGAT 732

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++FKNLR+CGDCHN  K+IS++ +REIIVRD  RFHHF++G CSC +YW
Sbjct: 733 IRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 178/391 (45%), Gaps = 52/391 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV  G   EA D   +   + G++ D YT+  V+ A  N      G+++H  VL+ 
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMH-SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT 303

Query: 58  GFE----WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA-------------- 99
             +    + + V  +L+ +Y R G    AR++FD MPV+D  SWNA              
Sbjct: 304 VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEA 363

Query: 100 -----------------MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                            MISG  Q+G   E L + ++M+LEG+       A  +  C+  
Sbjct: 364 NSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVL 423

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++ +G  +H  I++ G + +L V N LI MY++ G++  A  VF  M   D VSWN++I
Sbjct: 424 GSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMI 483

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           AA  Q    + A   +  M +  I PD +T +++ S  +     +  R  H F   R  +
Sbjct: 484 AALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGR--HYFDTMRVCY 541

Query: 263 ----MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD-VISWNTLITGYAQNGLASEAI 317
                ED    + ++D+  + G+ + A  V E +P +     W  L+ G   +G     I
Sbjct: 542 GITPEEDHY--SRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGI 599

Query: 318 EVFQMMEECNEINPNQ-GTYVSILPAYSHVG 347
              Q  +   E+ P Q GTY+S+   Y+ +G
Sbjct: 600 ---QAADRLLELMPQQDGTYISLSNMYAALG 627



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 137/354 (38%), Gaps = 86/354 (24%)

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP------ 293
           +AQL+    +R+VH  I+  G F    +I N ++D Y K   I  A  +F+ +P      
Sbjct: 6   LAQLSHTSFARAVHAHILTSG-FKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVA 64

Query: 294 ---------------------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                                      ++D +S+N +IT ++ +     A+++F  M+  
Sbjct: 65  ATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL 124

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGI-KIHARVIK----------NCLCFDVFVATCLV 375
             + P+  T+ S+L A S +        ++H  V K          N L    +V+    
Sbjct: 125 GFV-PDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNAL-MSCYVSCASS 182

Query: 376 DMYGKCGRIDDAMSLFYQVPRSS---------------------------------SVPW 402
            +   C  +  A  LF + P                                    +V W
Sbjct: 183 PLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAW 242

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           NA+IS +   G  ++A +  R+M   G++ D  T+ S+++A S++GL + G R  H    
Sbjct: 243 NAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIG-RQVHAYVL 301

Query: 463 EFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
              ++P     L     ++ L+ R G L  A      MPV+ D   W A+L  C
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGC 354


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/740 (35%), Positives = 392/740 (52%), Gaps = 47/740 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y R     +A D F +     GL PD   F   L A +   NL   + +    LK 
Sbjct: 195 MISGYGRIENHGKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKT 253

Query: 58  GFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           GFE DV +  ++L++Y R   + + A K F+ M  R+  +W+ MI+     G    A+ +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYA 175
            +   ++ ++     +   L  C R D+          I+   +   + VS N LI  Y 
Sbjct: 314 YERDPVKSIACRTALITG-LAQCGRIDDA--------RILFEQIPEPIVVSWNALITGYM 364

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + GM+  A  +FD+M  R+ +SW  +IA Y Q+     A G    + ++G+ P L +L S
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    + +        VH   ++ G         NA++ MY K   +  A  VF  +  K
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFAC-NALITMYGKCRNMEYARQVFSRMVTK 483

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMM------------------EECNEIN------- 330
           D++SWN+ +    QN L  EA   F  M                  E+ NE         
Sbjct: 484 DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543

Query: 331 -----PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
                PN      +L     +GA + G +IH   IK  +  ++ VA  L+ MY KCG   
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CA 602

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           D+  +F  +       WN II+ +  HG G +A+  ++ M   GV P+ +TFV LL ACS
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GLV EG ++F  M +++G+ P  +HY CMVDL GR G +  A  FI +MP+ PD  IW
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIW 722

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            ALLGAC+IH N E+G  A+++LF ++  N G YV++SNIY+++G W  V EVR + + +
Sbjct: 723 SALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+ K PG S  ++ +K+  F TG++ H + E+I   L  L   +K+ GYVPD  FVL D+
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDI 842

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E++KE  L  HSE+LA+A+ ++++P   PIQI KNLR+CGDCH + KF+S +T+R+I +
Sbjct: 843 DEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDI 902

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD NRFHHF++G CSC D+W
Sbjct: 903 RDGNRFHHFRNGSCSCEDFW 922



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 211/453 (46%), Gaps = 52/453 (11%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE--------------- 112
           +++  Y + G   +AR+LFD MP RD  SWN+M++GYC S   V+               
Sbjct: 132 AMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVS 191

Query: 113 ----------------ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
                           A DI  +M  EG+  D    AS L       N+     + +  +
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLAL 251

Query: 157 KHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K G E ++ +   ++N+Y++   ++  A++ F+ M+ER+  +W+++IAA         +H
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAAL--------SH 303

Query: 216 GFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
           G       A  + D + ++   T+++  L  C   R     I+        V+  NA++ 
Sbjct: 304 GGRIDAAIAVYERDPVKSIACRTALITGLAQC--GRIDDARILFEQIPEPIVVSWNALIT 361

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            Y + G++N A  +F+ +P ++ ISW  +I GYAQNG + EA+ + Q +     + P+  
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-PSLS 420

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +  SI  A S++ AL  G ++H+  +K    F+ F    L+ MYGKC  ++ A  +F ++
Sbjct: 421 SLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                V WN+ ++    +   D+A N F  ML      D +++ ++++A +H+   +E  
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAM 536

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             F  M  E      L +   +  L G  G LG
Sbjct: 537 GAFKTMFCEH----ELPNSPILTILLGVCGSLG 565



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 198/504 (39%), Gaps = 122/504 (24%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G    AR++FD MP RD  +WN+MIS YC +G    A D+ D      +S   +   +
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD-----AISGGNMRTGA 100

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           IL         LSG                         Y + G +  A RVFD M+ER+
Sbjct: 101 IL---------LSG-------------------------YGRLGRVLEARRVFDGMLERN 126

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP--DLLT-------------------- 232
            V+WN++I+ Y Q+ D   A   F  M    +     +LT                    
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 233 --LVSLTSIVAQLNDCRNSRSVHGFI--MRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
             LVS T +++      N          M R   + D     + +     LG ++    V
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----V 242

Query: 289 FEGLPV--------KDVISWNTLITGYAQN-GLASEAIEVFQMMEECNEINPNQGTYVSI 339
            E L V        +DV+    ++  Y+++  +   AI+ F+ M E NE      T+ ++
Sbjct: 243 LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY-----TWSTM 297

Query: 340 LPAYSHVGALRQGIKIHAR-VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           + A SH G +   I ++ R  +K+  C      T L+    +CGRIDDA  LF Q+P   
Sbjct: 298 IAALSHGGRIDAAIAVYERDPVKSIAC-----RTALITGLAQCGRIDDARILFEQIPEPI 352

Query: 399 SVPWNAIIS-------------------------------CHGIHGQGDKALNFFRQMLD 427
            V WNA+I+                                +  +G+ ++AL   +++  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+ P   +  S+  ACS+   +  G +  H +  + G + +      ++ ++G+  ++ 
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 488 MAHNFIQNMPVRPDASIWGALLGA 511
            A      M V  D   W + L A
Sbjct: 472 YARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           G+ GR+ +A  +F  +PR   + WN++IS +  +G  D A + +  +    +R   I   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            LL+     G V E +R F  M E   +      +  M+  + + G + MA      MP 
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 499 RPDASIWGALL-GACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANV 549
           R D S W ++L G C       L  V +  LFE +   N+  + +M + Y  +
Sbjct: 156 R-DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERNLVSWTVMISGYGRI 202


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/740 (35%), Positives = 392/740 (52%), Gaps = 47/740 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y R     +A D F +     GL PD   F   L A +   NL   + +    LK 
Sbjct: 195 MISGYGRIENHGKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKT 253

Query: 58  GFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           GFE DV +  ++L++Y R   + + A K F+ M  R+  +W+ MI+     G    A+ +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYA 175
            +   ++ ++     +   L  C R D+          I+   +   + VS N LI  Y 
Sbjct: 314 YERDPVKSIACRTALITG-LAQCGRIDDA--------RILFEQIPEPIVVSWNALITGYM 364

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + GM+  A  +FD+M  R+ +SW  +IA Y Q+     A G    + ++G+ P L +L S
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    + +        VH   ++ G         NA++ MY K   +  A  VF  +  K
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFAC-NALITMYGKCRNMEYARQVFSRMVTK 483

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMM------------------EECNEIN------- 330
           D++SWN+ +    QN L  EA   F  M                  E+ NE         
Sbjct: 484 DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543

Query: 331 -----PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
                PN      +L     +GA + G +IH   IK  +  ++ VA  L+ MY KCG   
Sbjct: 544 CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CA 602

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           D+  +F  +       WN II+ +  HG G +A+  ++ M   GV P+ +TFV LL ACS
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GLV EG ++F  M +++G+ P  +HY CMVDL GR G +  A  FI +MP+ PD  IW
Sbjct: 663 HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIW 722

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            ALLGAC+IH N E+G  A+++LF ++  N G YV++SNIY+++G W  V EVR + + +
Sbjct: 723 SALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+ K PG S  ++ +K+  F TG++ H + E+I   L  L   +K+ GYVPD  FVL D+
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDI 842

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E++KE  L  HSE+LA+A+ ++++P   PIQI KNLR+CGDCH + KF+S +T+R+I +
Sbjct: 843 DEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDI 902

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD NRFHHF++G CSC D+W
Sbjct: 903 RDGNRFHHFRNGSCSCEDFW 922



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 211/453 (46%), Gaps = 52/453 (11%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE--------------- 112
           +++  Y + G   +AR+LFD MP RD  SWN+M++GYC S   V+               
Sbjct: 132 AMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVS 191

Query: 113 ----------------ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
                           A DI  +M  EG+  D    AS L       N+     + +  +
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLAL 251

Query: 157 KHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           K G E ++ +   ++N+Y++   ++  A++ F+ M+ER+  +W+++IAA         +H
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAAL--------SH 303

Query: 216 GFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
           G       A  + D + ++   T+++  L  C   R     I+        V+  NA++ 
Sbjct: 304 GGRIDAAIAVYERDPVKSIACRTALITGLAQC--GRIDDARILFEQIPEPIVVSWNALIT 361

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
            Y + G++N A  +F+ +P ++ ISW  +I GYAQNG + EA+ + Q +     + P+  
Sbjct: 362 GYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML-PSLS 420

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +  SI  A S++ AL  G ++H+  +K    F+ F    L+ MYGKC  ++ A  +F ++
Sbjct: 421 SLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                V WN+ ++    +   D+A N F  ML      D +++ ++++A +H+   +E  
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAM 536

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             F  M  E      L +   +  L G  G LG
Sbjct: 537 GAFKTMFCEH----ELPNSPILTILLGVCGSLG 565



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 198/504 (39%), Gaps = 122/504 (24%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G    AR++FD MP RD  +WN+MIS YC +G    A D+ D      +S   +   +
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD-----AISGGNMRTGA 100

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           IL         LSG                         Y + G +  A RVFD M+ER+
Sbjct: 101 IL---------LSG-------------------------YGRLGRVLEARRVFDGMLERN 126

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP--DLLT-------------------- 232
            V+WN++I+ Y Q+ D   A   F  M    +     +LT                    
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPE 186

Query: 233 --LVSLTSIVAQLNDCRNSRSVHGFI--MRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
             LVS T +++      N          M R   + D     + +     LG ++    V
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----V 242

Query: 289 FEGLPV--------KDVISWNTLITGYAQN-GLASEAIEVFQMMEECNEINPNQGTYVSI 339
            E L V        +DV+    ++  Y+++  +   AI+ F+ M E NE      T+ ++
Sbjct: 243 LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY-----TWSTM 297

Query: 340 LPAYSHVGALRQGIKIHAR-VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           + A SH G +   I ++ R  +K+  C      T L+    +CGRIDDA  LF Q+P   
Sbjct: 298 IAALSHGGRIDAAIAVYERDPVKSIAC-----RTALITGLAQCGRIDDARILFEQIPEPI 352

Query: 399 SVPWNAIIS-------------------------------CHGIHGQGDKALNFFRQMLD 427
            V WNA+I+                                +  +G+ ++AL   +++  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+ P   +  S+  ACS+   +  G +  H +  + G + +      ++ ++G+  ++ 
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 488 MAHNFIQNMPVRPDASIWGALLGA 511
            A      M V  D   W + L A
Sbjct: 472 YARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           G+ GR+ +A  +F  +PR   + WN++IS +  +G  D A + +  +    +R   I   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            LL+     G V E +R F  M E   +      +  M+  + + G + MA      MP 
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 499 RPDASIWGALL-GACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANV 549
           R D S W ++L G C       L  V +  LFE +   N+  + +M + Y  +
Sbjct: 156 R-DVSSWNSMLTGYCH-----SLQMVDARNLFEKMPERNLVSWTVMISGYGRI 202


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 378/712 (53%), Gaps = 72/712 (10%)

Query: 66  AASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           A SL+  Y        A   FD +P   RD+   NA+IS Y ++ +A  A+ +   +   
Sbjct: 91  ATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 124 G-VSMDPITVASILPVCARSDNI--LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG-- 178
           G +  D  +  ++L       NI       +H  ++K G    L V N L+ +Y K    
Sbjct: 151 GSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESP 210

Query: 179 -MMRHALRVFDQMMERDVVSW-------------------------------NSIIAAYE 206
              R A +V D+M  +D ++W                               N++I+ Y 
Sbjct: 211 EATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYV 270

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFMED 265
            S   + A   F  M    +  D  T  S+ S  A +    + +SVHG I+R +  F+ +
Sbjct: 271 HSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPE 330

Query: 266 VI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               + NA+V  Y+K G I  A  +F+ + +KDV+SWNT+++GY ++    +A+EVF+ M
Sbjct: 331 AALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEM 390

Query: 324 EECNE------------------------------INPNQGTYVSILPAYSHVGALRQGI 353
              NE                              + P   TY   + A   +GAL+ G 
Sbjct: 391 PYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGK 450

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++H  +++            L+ MY +CG + +A  +F  +P   SV WNA+IS  G HG
Sbjct: 451 QLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHG 510

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +AL  F +M+ EG+ PD I+F+++LTAC+HSGLV EG RYF  M+ +FGI P   HY
Sbjct: 511 HGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHY 570

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             ++DL GRAG +G A + I+ MP  P  SIW A+L  CR  G+MELGA A+D+LF++  
Sbjct: 571 TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G Y+L+SN Y+  G W     VR L RDRG+KK PG S IE  NKV +F  G+  HP
Sbjct: 631 QHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHP 690

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           +  ++Y  L  + AKM+ LGYVPD   VL D+E  +KEHIL +HSERLA+ FG+++ PP 
Sbjct: 691 EAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPG 750

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + + + KNLR+C DCH    F+S+   REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 751 ATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 159/555 (28%), Positives = 247/555 (44%), Gaps = 91/555 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           +IS Y R    + AV  F     +  LRPD Y+F  +L A  +L +       ++HCSVL
Sbjct: 127 VISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVL 186

Query: 56  KLGFEWDVFVAASL--LHMYCRFGLANV-ARKLFDDMPVRDSGS---------------- 96
           K G    + V  +L  L+M C    A   ARK+ D+MP +D  +                
Sbjct: 187 KSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGA 246

Query: 97  ---------------WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
                          WNAMISGY  SG AVEA ++   M LE V +D  T  S+L  CA 
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 142 SDNILSGLLIHLYIVKHGLEF----NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
                 G  +H  I++    F     L V+N L+  Y+K G +  A R+FD M  +DVVS
Sbjct: 307 VGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS 366

Query: 198 WNSIIAAYEQSNDPITA-----------------------HG--------FFTTMQQAGI 226
           WN+I++ Y +S+    A                       HG         F  M+   +
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P   T     +   +L   ++ + +HG I++ G F      GNA++ MYA+ G +  A 
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLG-FEGSNSAGNALITMYARCGAVKEAH 485

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +F  +P  D +SWN +I+   Q+G   EA+E+F  M     I P++ +++++L A +H 
Sbjct: 486 LMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM-VAEGIYPDRISFLTVLTACNHS 544

Query: 347 GALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           G + +G +    + ++   F +       T L+D+ G+ GRI +A  L   +P   +   
Sbjct: 545 GLVDEGFRYFESMKRD---FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMM 460
           W AI+S  G    GD  L          + P H  T++ L    S +G   +  R   +M
Sbjct: 602 WEAILS--GCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLM 659

Query: 461 QEEFGIKPHLKHYGC 475
           ++  G+K   K  GC
Sbjct: 660 RDR-GVK---KEPGC 670



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/503 (22%), Positives = 209/503 (41%), Gaps = 89/503 (17%)

Query: 150 LIHLYIVKHGLEF--NLFVSN-------NLINMYAKFGMMRHALRVFDQM--MERDVVSW 198
           LIHLY +   L     LF ++       +L+  YA    +  A+  FD +    RD V  
Sbjct: 65  LIHLYTLSRDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLH 124

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLND--CRNSRSVHGF 255
           N++I+AY +++    A   F ++  +G ++PD  +  +L S    L +   R+   +H  
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCS 184

Query: 256 IMRRG-------------WFM--------------------EDVIIGNAVVDMYAKLGII 282
           +++ G              +M                    +D +    +V  Y + G +
Sbjct: 185 VLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDV 244

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A +VFE +  K  + WN +I+GY  +G+A EA E+F+ M     +  ++ T+ S+L A
Sbjct: 245 GAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRM-VLERVPLDEFTFTSVLSA 303

Query: 343 YSHVGALRQGIKIHARVIKNCLCF----DVFVATCLVDMYGKCGRI-------------- 384
            ++VG    G  +H ++I+    F     + V   LV  Y KCG I              
Sbjct: 304 CANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKD 363

Query: 385 -----------------DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
                            D A+ +F ++P  + + W  ++S +   G  + AL  F +M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRS 423

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           E V+P   T+   + AC   G +  G Q + H++Q   G +        ++ ++ R G +
Sbjct: 424 ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQ--LGFEGSNSAGNALITMYARCGAV 481

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSN 544
             AH     MP   D+  W A++ A   HG+        DR+    +  + + +  +++ 
Sbjct: 482 KEAHLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTA 540

Query: 545 IYANVGKWEGVDEVRSLARDRGL 567
              +    EG     S+ RD G+
Sbjct: 541 CNHSGLVDEGFRYFESMKRDFGI 563


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 353/574 (61%), Gaps = 2/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           V  IL +CA+   +L G   H  I+  GL+ +L  SN LINMY+K G +  A +VFD+M 
Sbjct: 67  VHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMP 126

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            R +VSWN++I +  Q+ +   A      MQ+ G      T+ S+    A        + 
Sbjct: 127 SRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQL 186

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H F ++    + +V +  A++D+YAK G++  A  VFE +P + V++W+++  GY QN 
Sbjct: 187 LHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNE 245

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           +  +A+ +F+   E   +  +Q    S++ A + + A+ +G +++A + K+  C ++FVA
Sbjct: 246 MYEQALALFRKAWETG-LKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVA 304

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+DMY KCG I+++  +F  V + + V WNA+IS    H +  + +  F +M   G+ 
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TFVS+L+AC H GLV +GQ+YF +M +E  + P++ HY CMVD   RAG +  A++
Sbjct: 365 PNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYD 424

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I  +P    AS+WG+LL +CR HGN+EL  VA+ +LF+++  N G Y+L+SN+YA  GK
Sbjct: 425 LISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGK 484

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W+ V ++R L ++  +KK  G S IE+ +KV +F  G R HPK  +IY +L  +  +++ 
Sbjct: 485 WDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQK 544

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
           LGY  +    L  V E  K+ +L  HSE+LA   G++  PP +PI+I KNLR+CGDCH++
Sbjct: 545 LGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K  S+   R++IVRD+NRFHHFK+G CSCGD+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 223/396 (56%), Gaps = 7/396 (1%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +LK C   + L+ GK  H  +L +G + D+  +  L++MY + G  + AR++FD+MP R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SWN MI    Q+G   EALD+L +M+ EG      T++S+L  CA    +    L+H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           + +K  ++ N+FV+  L+++YAK G+M+ A+ VF+ M +R VV+W+S+ A Y Q+     
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F    + G++ D   + S+    A L      + ++  + + G F  ++ + ++++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSG-FCSNIFVASSLI 308

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYAK G I  +  VF  +  ++V+ WN +I+G +++  + E + +F+ M++   ++PN 
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG-LSPND 367

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T+VS+L A  H+G +R+G K    + K + L  +VF  +C+VD   + G+I +A  L  
Sbjct: 368 VTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 393 QVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLD 427
           ++P ++S   W ++++    HG  + A    +++ D
Sbjct: 428 KLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/555 (41%), Positives = 336/555 (60%), Gaps = 33/555 (5%)

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
           +A  +F  +   +V  WN+ + ++ + + P  A   F  +++  I PD  T   +    +
Sbjct: 65  YAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACS 124

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           +L D RN + VHG++ + G    ++ + N +V +YA  G I  A  VF+ +P +DVI+WN
Sbjct: 125 RLLDVRNGKIVHGYVEKLG-LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 302 -------------------------------TLITGYAQNGLASEAIEVFQMMEECNEIN 330
                                          ++I GYAQ G + EAI++F  ME+   + 
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL- 242

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN+ T V++L A + +G L  G +IH    ++    ++ V   L+DMY KCG ++DA  +
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  +   + V W+A+I+    HG+ + AL  F +M++ GV+P+ +TF+ +L ACSH G+V
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMV 362

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
            +G++YF  M  ++GI P ++HYGCMVDLF RAG L  AH FI NMP+ P+  +WGALLG
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
            C++H N++L   A+  L ++D  N GYYV++SNIYA  G+WE V  VR L RDRG+KKT
Sbjct: 423 GCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKT 482

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
           PGWSSI V   V  F  G+ THP+ E+I+     L  +MK  GYVP+ S VL D+EED+K
Sbjct: 483 PGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQK 542

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E  L  HSE+LA+ FG+I + P + I+I KNLRVC DCH   K IS ++ REI+VRD NR
Sbjct: 543 EKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNR 602

Query: 691 FHHFKDGICSCGDYW 705
           FH FK+G CSCGDYW
Sbjct: 603 FHCFKNGSCSCGDYW 617



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 220/477 (46%), Gaps = 59/477 (12%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A+ +F  +   +   WN  +  + +  +  +A+ +   +R   +S D  T + +L  C+R
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN-- 199
             ++ +G ++H Y+ K GL+ N+F+ N ++++YA  G +  A +VFD+M +RDV++WN  
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 200 -----------------------------SIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
                                        S+I  Y Q      A   F  M+ AG+ P+ 
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T+V++    A + +    R +H F  R G + +++ + N ++DMY K G +  AC +F+
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHDFSNRSG-YEKNIRVCNTLIDMYVKCGCLEDACRIFD 304

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  + V+SW+ +I G A +G A +A+ +F  M     + PN  T++ IL A SH+G + 
Sbjct: 305 NMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTG-VKPNAVTFIGILHACSHMGMVE 363

Query: 351 QGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISC 408
           +G K  A + ++  +   +    C+VD++ + G + +A      +P + + V W A++  
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 409 HGIHGQGDKALNFFRQM-----LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
             +H     A    R +     L++G       +V L    + +G   +  R   +M++ 
Sbjct: 424 CKVHKNIKLAEEATRHLSKLDPLNDGY------YVVLSNIYAEAGRWEDVARVRKLMRDR 477

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA----SIWGALLGACRIHG 516
            G+K        MV+        G+ +NF+      P        W  LL   ++ G
Sbjct: 478 -GVKKTPGWSSIMVE--------GVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKG 525



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 173/374 (46%), Gaps = 44/374 (11%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAAS 68
           ++A+  FY+      + PD YT   VLKAC  L+D   GK +H  V KLG + ++F+   
Sbjct: 95  ADAISLFYRLR-EFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNM 153

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWN------------------------------ 98
           ++H+Y   G   VARK+FD MP RD  +WN                              
Sbjct: 154 IVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSW 213

Query: 99  -AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
            +MI GY Q G + EA+D+  EM   G+  + +TV ++L  CA   N++ G  IH +  +
Sbjct: 214 TSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNR 273

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            G E N+ V N LI+MY K G +  A R+FD M ER VVSW+++IA          A   
Sbjct: 274 SGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  M   G++P+ +T + +    + +      R     + R    +  +     +VD+++
Sbjct: 334 FNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFS 393

Query: 278 KLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQ 333
           + G++  A      +P+  + + W  L+ G   +    LA EA      ++  N+     
Sbjct: 394 RAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLND----- 448

Query: 334 GTYVSILPAYSHVG 347
           G YV +   Y+  G
Sbjct: 449 GYYVVLSNIYAEAG 462



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 5/187 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI  Y +CG+  EA+D F +    +GL P+  T   VL AC    NLV G++IH    + 
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEME-DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS 274

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E ++ V  +L+ MY + G    A ++FD+M  R   SW+AMI+G    G A +AL + 
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           ++M   GV  + +T   IL  C+    +  G      + + +G+   +     +++++++
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 177 FGMMRHA 183
            G+++ A
Sbjct: 395 AGLLQEA 401


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/571 (40%), Positives = 351/571 (61%), Gaps = 2/571 (0%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   AR+   + G+  H  I++ GL  +   SN L+NMY+K G++  A ++FD+M  R 
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +VSWN+++ ++ Q+ D   A   F  MQ+ G      T+ S+    A        + +HG
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 145

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           F ++      +V +G A++D+YAK G++  A  VFE +P +  ++W++++ GY QN L  
Sbjct: 146 FALKTA-LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE 204

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+ +F   +    +  NQ T  S L A +   AL +G ++ A   K  +  ++FV + L
Sbjct: 205 EALVLFHRAQAMG-LEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSL 263

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KCG I++A ++F  V   + V WNAI+S    H +  +A+ +F +M   G+ P+ 
Sbjct: 264 IDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPND 323

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           IT++S+L+ACSH GLV +G++YF +M     + P++ HY CMVD+ GRAG L  A +FI 
Sbjct: 324 ITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFID 383

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
            MP    AS+WG+LL +CRI+ N+EL  VA+  LFE++  N G +VL+SNIYA   +WE 
Sbjct: 384 RMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEE 443

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
           V   R+L ++   KK  G S IE+ +KV  F  G R HP+  +IY +L +L  +MK +GY
Sbjct: 444 VARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGY 503

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
                  L DVEE  K+ +L  HSE+LA+ FGI+  P  +PI+I KNLR+CGDCH++ K 
Sbjct: 504 KAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKL 563

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            S ITEREIIVRD+NRFHHFK+G CSCG++W
Sbjct: 564 ASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 205/368 (55%), Gaps = 4/368 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R  ++G   H  ++++G   D   +  L++MY + GL   ARKLFD+MPVR   SWN M+
Sbjct: 34  RAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMV 93

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
             + Q+G+  +AL +  +M+ EG S    TV+S++  CA    +     +H + +K  L+
Sbjct: 94  GSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALD 153

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N+FV   L+++YAK G+++ A  VF+ M ER  V+W+S++A Y Q+     A   F   
Sbjct: 154 SNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRA 213

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q  G++ +  T+ S  S  A        + V     + G    ++ + ++++DMYAK GI
Sbjct: 214 QAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG-IGSNIFVISSLIDMYAKCGI 272

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  A  VF  +  K+V+ WN +++G++++  + EA+  F+ M++   I PN  TY+S+L 
Sbjct: 273 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG-ICPNDITYISVLS 331

Query: 342 AYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
           A SH+G + +G K    +I+ + +  +V   +C+VD+ G+ G + +A     ++P  ++ 
Sbjct: 332 ACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATA 391

Query: 401 P-WNAIIS 407
             W ++++
Sbjct: 392 SMWGSLLA 399



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 156/310 (50%), Gaps = 5/310 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M+  + + G   +A+  F Q     G     +T   V+ AC     + + K++H   LK 
Sbjct: 92  MVGSHTQNGDCEKALVLFMQMQ-KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKT 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + +VFV  +LL +Y + GL   A  +F+ MP R   +W++M++GY Q+    EAL + 
Sbjct: 151 ALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLF 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              +  G+  +  T++S L  CA    ++ G  +     K G+  N+FV ++LI+MYAK 
Sbjct: 211 HRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKC 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A  VF  + E++VV WN+I++ + +    + A  +F  MQQ GI P+ +T +S+ 
Sbjct: 271 GIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVL 330

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  + L      R     ++R      +V+  + +VD+  + G+++ A    + +P    
Sbjct: 331 SACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDAT 390

Query: 298 IS-WNTLITG 306
            S W +L+  
Sbjct: 391 ASMWGSLLAS 400


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/667 (37%), Positives = 381/667 (57%), Gaps = 8/667 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           ++L   K +H  +LK G  +  F    L+  Y +  +   ARKLFD+MP R   +WN+MI
Sbjct: 15  KSLTTLKSLHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMI 73

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           S +   G   EA+++ D M  EGV  D  T ++I    +       G   H   V  G E
Sbjct: 74  SSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFE 133

Query: 162 F-NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             + FV+  +++MYAKFG M+ A  VFD+++++DVV + ++I  Y Q      A   F  
Sbjct: 134 VSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFED 193

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAKL 279
           M  + I+P+  TL S+      L D  N + +HG +++ G  +E V+    +++ MY+K 
Sbjct: 194 MVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSG--LESVVASQTSLLTMYSKC 251

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
            ++  +  VF  L     ++W + I G  QNG    A+ +F+ M  C+ I+PN  T+ SI
Sbjct: 252 NMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCS-ISPNHFTFSSI 310

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S +  L  G +IHA  +K  +  + +V   L+ +YGKCG ++ A S+F  +     
Sbjct: 311 LHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDV 370

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V  N +I  +  +G G +AL  F +M   G +P+ +TF+S+L AC+++GLV EG + F +
Sbjct: 371 VSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSL 430

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           ++    I+    HY CM+DL GRA     A   I+     PD   W  LL AC+IHG +E
Sbjct: 431 IRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVE 489

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +      ++ +    + G ++L++NIYA+ GKW+ V E++S  RD  LKKTP  S ++++
Sbjct: 490 MAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDID 549

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            +V  F  G+ +HP+  +I + L  L  K+ +LGY PD  FVLQD+EE++K   L  HSE
Sbjct: 550 REVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSE 609

Query: 640 RLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           +LAIAF +  +  K + I+IFKNLRVCGDCH+W KF+S +T R+II RD+ RFHHFK GI
Sbjct: 610 KLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGI 669

Query: 699 CSCGDYW 705
           CSC DYW
Sbjct: 670 CSCKDYW 676



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 228/443 (51%), Gaps = 22/443 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS +V  G+  EA++  Y   L  G+ PD YTF  + KA   +    +G+K H   + L
Sbjct: 72  MISSHVSRGKTKEAIE-LYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVL 130

Query: 58  GFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           GFE  D FVA  ++ MY +FG    AR +FD +  +D   + A+I GY Q G   EAL++
Sbjct: 131 GFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEV 190

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++M    +  +  T+AS+L  C    ++++G LIH  +VK GLE  +    +L+ MY+K
Sbjct: 191 FEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSK 250

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             M+  +++VF+ +     V+W S I    Q+     A   F  M +  I P+  T  S+
Sbjct: 251 CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSI 310

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD-----MYAKLGIINSACAVFEG 291
               + L        +H   ++ G      + GN  VD     +Y K G +  A +VFE 
Sbjct: 311 LHACSSLAMLEAGEQIHAVTVKLG------VDGNKYVDAALIHLYGKCGNVEKARSVFES 364

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           L   DV+S NT+I  YAQNG   EA+E+F+ M++     PN  T++SIL A ++ G + +
Sbjct: 365 LTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGH-KPNVVTFISILLACNNAGLVEE 423

Query: 352 GIKIHARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           G +I + +  N    L  D +  TC++D+ G+  R ++A  L  +      + W  +++ 
Sbjct: 424 GCQIFSLIRNNHSIELTRDHY--TCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNA 481

Query: 409 HGIHGQGDKALNFFRQMLDEGVR 431
             IHG+ + A  F ++MLD+  R
Sbjct: 482 CKIHGEVEMAEKFMKKMLDQAPR 504


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 386/709 (54%), Gaps = 8/709 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKI---HCSVLKL 57
           MI  Y +  R  +A   F +    SG +PD+ T+  +L  C +L   K++   H  ++KL
Sbjct: 111 MIGAYSKSNRFGDAFKLFAEMH-RSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKL 169

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +  V  +LL  Y + G  + AR+LF +M   DS S+N MI+GY  +G   EA+++ 
Sbjct: 170 GHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELF 229

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+  G      T A+++      D+   G  IH ++VK     N+FV N  ++ Y+K 
Sbjct: 230 VEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKH 289

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +    ++F++M E D VS+N II AY        +   F  +Q            ++ 
Sbjct: 290 DCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTML 349

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           SI A   D +  R +H  ++       D  + N++VDMYAK G    A  +F  L  +  
Sbjct: 350 SIAASSLDLQMGRQLHAQVVV-SMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRST 408

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + W  +I+   Q GL    +++F  M   N ++ +Q T+  +L A +++ ++  G ++H+
Sbjct: 409 VPWTAMISANVQRGLHENGLKLFYEMRRAN-VSADQATFACVLKASANLASILLGKQLHS 467

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VI++    +V+    L+DMY  C  I DA+  F ++   + V WNA++S +  +G G  
Sbjct: 468 CVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKG 526

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
            L  F +M+  G +PD ++F+ +LTACSH  LV EG +YF+ M   + + P  +HY  MV
Sbjct: 527 TLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMV 586

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           D   R+G    A   +  MP  PD  +W ++L +CRIH N  L   A+ +LF +    + 
Sbjct: 587 DALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDA 646

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNI+A  G+W+ V +V+   RDRG++K P +S +E+ +KV +F   +  HP+  
Sbjct: 647 APYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQL 706

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  ++  L  +M+  GY PD S   Q+V+++ K   L  HSERLAIAF +I++P  SPI
Sbjct: 707 EILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPI 766

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + KNLR C DCH   K IS+I  REI VRDSNRFHHF+DG CSCGDYW
Sbjct: 767 LVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 213/446 (47%), Gaps = 7/446 (1%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G   VAR++FDD   R   +W  MI  Y +S    +A  +  EM   G   D +T 
Sbjct: 84  YVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTY 143

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            ++L  C   +        H  IVK G   N  V N L++ Y K G +  A R+F +M  
Sbjct: 144 ITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCG 203

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
            D VS+N +I  Y  +     A   F  MQ  G +P   T  ++ S    L+D    + +
Sbjct: 204 WDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQI 263

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HGF+++   F+ +V +GNA +D Y+K   +N    +F  +P  D +S+N +IT YA  G 
Sbjct: 264 HGFVVKTS-FIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGK 322

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E+I++FQ + +    +     + ++L   +    L+ G ++HA+V+ +    D  V+ 
Sbjct: 323 VKESIDLFQEL-QFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSN 381

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LVDMY KCG+ ++A  +F ++   S+VPW A+IS +   G  +  L  F +M    V  
Sbjct: 382 SLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSA 441

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHN 491
           D  TF  +L A ++   +  G++  H      G      + GC ++D++     +  A  
Sbjct: 442 DQATFACVLKASANLASILLGKQ-LHSCVIRSGFMN--VYSGCALLDMYANCASIKDAIK 498

Query: 492 FIQNMPVRPDASIWGALLGACRIHGN 517
             + M  R +   W ALL A   +G+
Sbjct: 499 TFEEMSER-NVVTWNALLSAYAQNGD 523



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 170/359 (47%), Gaps = 4/359 (1%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N F  + +I+ Y K G +  A R+FD   ER VV+W ++I AY +SN    A   F  M 
Sbjct: 73  NSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMH 132

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           ++G QPD +T ++L +    L   +     H  I++ G  +   +  N ++D Y K G +
Sbjct: 133 RSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVC-NTLLDSYFKTGGL 191

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           +SA  +F  +   D +S+N +ITGYA NGL  EAIE+F  M+      P+  T+ +++ A
Sbjct: 192 DSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLG-FKPSDFTFAAVISA 250

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
              +     G +IH  V+K     +VFV    +D Y K   +++   LF ++P    V +
Sbjct: 251 SVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSY 310

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           N II+ +   G+  ++++ F+++        +  F ++L+  + S  +  G R  H    
Sbjct: 311 NVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMG-RQLHAQVV 369

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
                P  +    +VD++ + G    A      +  R     W A++ A    G  E G
Sbjct: 370 VSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVP-WTAMISANVQRGLHENG 427


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 357/590 (60%), Gaps = 38/590 (6%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           IH   +  G+  + FV++ +++  A    G + +A  +F ++ + D+   N++I AY  S
Sbjct: 54  IHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFS 113

Query: 209 NDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
            +PI A  F++ M ++ +  PD+ T   L    +++   R   ++H  + + GW  E V 
Sbjct: 114 PNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSE-VS 172

Query: 268 IGNAVVDMYAKLGIINSA------------------------CAVF-------EGLPVKD 296
           + N +V MYA  G+I SA                        C VF       E +P +D
Sbjct: 173 VSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRD 232

Query: 297 VISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           V+SW+ +I GY Q     E + +FQ MM E  +I PN+   V+ L A +H+GA+ QG  I
Sbjct: 233 VVSWSVMINGYVQESRFKEGLGLFQDMMGE--KIEPNESVLVNALSACAHLGAMEQGQWI 290

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              + +  +   V + T L+DMY KCG ++ A+ +F+++   + + W+A+I+   I+GQG
Sbjct: 291 ERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQG 350

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             ALN F QM  +GV+P+ +TF+ +L ACSHS LV EG  +FH M   +G+KP+  H+ C
Sbjct: 351 KDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCC 410

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL+GRAG L  A   I++MP +P+++IWGALL ACRIHG+ ELG     RL E+D  +
Sbjct: 411 MVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNH 470

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YVL+SNIYA  G+W+ V E+R + R+R + KTPG S I++ + +  F  G+ +HP+ 
Sbjct: 471 GGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQL 530

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           E IY +L  ++ ++K+ GY PD   VL D++E+EKE  L  HSE+LAIAFG+I + P + 
Sbjct: 531 EMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTT 590

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+I KNLRVC DCH+ TK IS+I  REIIVRD  RFHHF+DG CSC D+W
Sbjct: 591 IRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 212/465 (45%), Gaps = 47/465 (10%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDSG 95
           L +C+ L D  +IH   +  G   D FVA+ +L        G    AR LF  +   D  
Sbjct: 42  LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIF 101

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI-TVASILPVCARSDNILSGLLIHLY 154
             N +I  Y  S N ++A+    EM    V    + T   +L  C+   ++  G  IH +
Sbjct: 102 IANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSH 161

Query: 155 IVKHGLEFNLFVSNNLINMYA-------------------------------KFGMMRHA 183
           + K G    + VSN L+ MYA                               K G+ + A
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSA 221

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            R+F+ M +RDVVSW+ +I  Y Q +      G F  M    I+P+   LV+  S  A L
Sbjct: 222 RRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHL 281

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + +  ++ R+   +  V +G A++DMY+K G +  A  VF  +  K+V++W+ +
Sbjct: 282 GAMEQGQWIERYMERKNVRL-TVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAM 340

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKN 362
           I G A NG   +A+ +F  M E   + PN+ T++ IL A SH   + +G    H+     
Sbjct: 341 INGLAINGQGKDALNLFSQM-EMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIY 399

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNF 421
            L  +     C+VD+YG+ G +D A ++   +P + +S  W A+++   IHG  +     
Sbjct: 400 GLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQV 459

Query: 422 FRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            +++L+  + P+H    +   ++  AC     V+E +R   MM+E
Sbjct: 460 GKRLLE--LDPNHGGRYVLLSNIYAACGRWDRVAELRR---MMRE 499



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 175/390 (44%), Gaps = 53/390 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y       +AV  + + T +S + PD +TFP +LKAC  +     G+ IH  V KL
Sbjct: 106 LIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKL 165

Query: 58  GFEWDVFVAASLLHMYCRFGLA-------------------------------NVARKLF 86
           G+  +V V+  L+ MY   GL                                  AR++F
Sbjct: 166 GWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMF 225

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           + MP RD  SW+ MI+GY Q     E L +  +M  E +  +   + + L  CA    + 
Sbjct: 226 EAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAME 285

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  I  Y+ +  +   + +   LI+MY+K G +  AL VF +M E++V++W+++I    
Sbjct: 286 QGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLA 345

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV-------HGFIMRR 259
            +     A   F+ M+  G++P+ +T + +      LN C +S+ V       H      
Sbjct: 346 INGQGKDALNLFSQMEMQGVKPNEVTFIGI------LNACSHSKLVDEGCSFFHSMTSIY 399

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIE 318
           G    +      +VD+Y + G+++ A  V + +P K +   W  L+     +G  +E  E
Sbjct: 400 G-LKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHG-DTELGE 457

Query: 319 VFQMMEECNEINPNQ-GTYVSILPAYSHVG 347
             Q+ +   E++PN  G YV +   Y+  G
Sbjct: 458 --QVGKRLLELDPNHGGRYVLLSNIYAACG 485



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 133/324 (41%), Gaps = 38/324 (11%)

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL---GIINS 284
           P LL    +   ++     ++   +H   +  G F ++ +    +   +A L   G I  
Sbjct: 30  PQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILS--FAALSPHGSIPY 87

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +F  +   D+   NTLI  YA +    +A+  +  M E + + P+  T+  +L A S
Sbjct: 88  ARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACS 147

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            + +LR G  IH+ V K     +V V+  LV MY  CG I+ A  +F + P      WN 
Sbjct: 148 EIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNI 207

Query: 405 IISCH---GIHGQGDK----------------------------ALNFFRQMLDEGVRPD 433
           +I  +   G+     +                             L  F+ M+ E + P+
Sbjct: 208 MIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPN 267

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
               V+ L+AC+H G + +GQ +     E   ++  ++    ++D++ + G +  A    
Sbjct: 268 ESVLVNALSACAHLGAMEQGQ-WIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVF 326

Query: 494 QNMPVRPDASIWGALLGACRIHGN 517
             M  + +   W A++    I+G 
Sbjct: 327 HKMKEK-NVLAWSAMINGLAINGQ 349


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 361/601 (60%), Gaps = 7/601 (1%)

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           C   +   A+  +D ++  G+  D  T + ++  C  +  +  G LI  ++  +G    +
Sbjct: 37  CYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMM 96

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           F+ N LINMY KF ++  A ++FDQM +R+V+SW ++I+AY +      A      M + 
Sbjct: 97  FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            ++P++ T    +S++   N   + R +H  I++ G    DV + +A++D++AKLG    
Sbjct: 157 NVRPNVYTY---SSVLRSCNGMSDVRMLHCGIIKEG-LESDVFVRSALIDVFAKLGEPED 212

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A +VF+ +   D I WN++I G+AQN  +  A+E+F+ M+    I   Q T  S+L A +
Sbjct: 213 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACT 271

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +  L  G++ H  ++K     D+ +   LVDMY KCG ++DA+ +F Q+     + W+ 
Sbjct: 272 GLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +IS    +G   +AL  F +M   G +P++IT V +L ACSH+GL+ +G  YF  M++ +
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P  +HYGCM+DL G+AG L  A   +  M   PDA  W  LLGACR+  NM L   A
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYA 449

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           + ++  +D E+ G Y L+SNIYAN  KW+ V+E+R+  RDRG+KK PG S IEVN ++  
Sbjct: 450 AKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHA 509

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+ +HP+  ++  +L  L  ++  +GYVP+ +FVLQD+E ++ E  L  HSE+LA+A
Sbjct: 510 FIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALA 569

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG+++ P +  I+I KNLR+CGDCH + K  S++  R I++R   R+HHF+DG CSCGDY
Sbjct: 570 FGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDY 629

Query: 705 W 705
           W
Sbjct: 630 W 630



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 207/389 (53%), Gaps = 14/389 (3%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           + GL  D  T+  ++K C   R + +G  I   +   G    +F+   L++MY +F L N
Sbjct: 54  SHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLN 113

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            A +LFD MP R+  SW  MIS Y +     +AL++L  M  + V  +  T +S+L  C 
Sbjct: 114 DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN 173

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
              ++    ++H  I+K GLE ++FV + LI+++AK G    AL VFD+M+  D + WNS
Sbjct: 174 GMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           II  + Q++    A   F  M++AG   +  TL S+      L         H  I++  
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK-- 288

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            + +D+I+ NA+VDMY K G +  A  VF  +  +DVI+W+T+I+G AQNG + EA+++F
Sbjct: 289 -YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 347

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMY 378
           + M+  +   PN  T V +L A SH G L  G   + R +K     D       C++D+ 
Sbjct: 348 ERMKS-SGTKPNYITIVGVLFACSHAGLLEDGW-YYFRSMKKLYGIDPVREHYGCMIDLL 405

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
           GK G++DDA+ L  ++     +V W  ++
Sbjct: 406 GKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 168/316 (53%), Gaps = 26/316 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y +C    +A++      L   +RP+ YT+  VL++C  + D + +HC ++K G E
Sbjct: 133 MISAYSKCKIHQKALELLV-LMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE 191

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFV ++L+ ++ + G    A  +FD+M   D+  WN++I G+ Q+  +  AL++   M
Sbjct: 192 SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           +  G   +  T+ S+L  C     +  G+  H++IVK+  + +L ++N L++MY K G +
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSL 309

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             ALRVF+QM ERDV++W+++I+   Q+     A   F  M+ +G +P+ +T      IV
Sbjct: 310 EDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT------IV 363

Query: 241 AQLNDCRNSRSVHGFIMRRGWF----MEDVIIGNAV-------VDMYAKLGIINSACAVF 289
             L  C      H  ++  GW+    M+ +   + V       +D+  K G ++ A  + 
Sbjct: 364 GVLFACS-----HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 290 EGLPVK-DVISWNTLI 304
             +  + D ++W TL+
Sbjct: 419 NEMECEPDAVTWRTLL 434


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 348/574 (60%), Gaps = 3/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +  +L   ARS +I+ GL +H YIVK GL     V+NNLIN Y+K  +   + R F+   
Sbjct: 18  ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++   +W+SII+ + Q+  P  +  F   M    ++PD   L S T     L+ C   +S
Sbjct: 78  QKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKS 137

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH   M+ G +  DV +G+++VDMYAK G I  A  +F+ +P+++V++W+ ++ GYAQ G
Sbjct: 138 VHCLSMKTG-YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMG 196

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +F+     N +  N  ++ +++   ++   L  G +I    IK+      FV 
Sbjct: 197 ENEEALWLFKEALFEN-LAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVG 255

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + LV +Y KCG ++ A  +F +VP  +   WNA++     H    K +  F++M   G++
Sbjct: 256 SSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMK 315

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ ITF+++L ACSH+GLV EG+ YF +M+E   I+P  KHY  +VD+ GRAG L  A  
Sbjct: 316 PNFITFLNVLNACSHAGLVDEGKYYFDLMKES-RIEPTDKHYASLVDMLGRAGKLEEALE 374

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            + NMP+ P  S+WGALL +C IH N EL A A+D++FE+   + G ++ +SN YA  G+
Sbjct: 375 IVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGR 434

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +E   + R L RDRG KK  G S +E  NKV  F  G R H + ++IY++L  L  +M+ 
Sbjct: 435 FEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEK 494

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GYV D S+VL++V+ DEK   +  HSERLAIAFG+I+ P   PI++ KNLRVCGDCHN 
Sbjct: 495 AGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNA 554

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KF+S  T R IIVRD+NRFH F+DG CSC DYW
Sbjct: 555 IKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 202/384 (52%), Gaps = 15/384 (3%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R++V G ++H  ++K G      VA +L++ Y +  L   +R+ F+D P + + +W+++I
Sbjct: 29  RSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSII 88

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS----GLLIHLYIVK 157
           S + Q+     +L+ L +M    +  D      +LP   +S  ILS    G  +H   +K
Sbjct: 89  SCFAQNELPWMSLEFLRKMMAGSLRPDD----HVLPSATKSCGILSRCDIGKSVHCLSMK 144

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            G + ++FV ++L++MYAK G + +A ++FD+M  R+VV+W+ ++  Y Q  +   A   
Sbjct: 145 TGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWL 204

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F       +  +  +  ++ S+ A        R + G  ++   F     +G+++V +Y+
Sbjct: 205 FKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSS-FDSSSFVGSSLVSLYS 263

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G +  A  VF+ +P++++  WN ++   AQ+    + IE+F+ M + + + PN  T++
Sbjct: 264 KCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRM-KLSGMKPNFITFL 322

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           ++L A SH G + +G K +  ++K       D   A+ LVDM G+ G++++A+ +   +P
Sbjct: 323 NVLNACSHAGLVDEG-KYYFDLMKESRIEPTDKHYAS-LVDMLGRAGKLEEALEIVTNMP 380

Query: 396 -RSSSVPWNAIISCHGIHGQGDKA 418
              +   W A+++   IH   + A
Sbjct: 381 IDPTESVWGALLTSCTIHKNTELA 404



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 179/356 (50%), Gaps = 37/356 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F +  +   LRPD +  P   K+C  L     GK +HC  +K G++ DVFV +SL+ MY 
Sbjct: 103 FLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYA 162

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    ARK+FD+MP+R+  +W+ M+ GY Q G   EAL +  E   E ++++  + ++
Sbjct: 163 KCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFST 222

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++ VCA S  +  G  I    +K   + + FV ++L+++Y+K G +  A +VFD++  R+
Sbjct: 223 VISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRN 282

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +  WN+++ A  Q +        F  M+ +G++P+ +T +++      LN C      H 
Sbjct: 283 LGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNV------LNACS-----HA 331

Query: 255 FIMRRGWFMEDVIIGN----------AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTL 303
            ++  G +  D++  +          ++VDM  + G +  A  +   +P+    S W  L
Sbjct: 332 GLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGAL 391

Query: 304 ITG---YAQNGLAS-EAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIK 354
           +T    +    LA+  A +VF       E+ P + G ++S+  AY+  G      K
Sbjct: 392 LTSCTIHKNTELAAFAADKVF-------ELGPVSSGMHISLSNAYAADGRFEDAAK 440



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N      +L + +   ++ +G+++H  ++K+ L     VA  L++ Y K     D+   F
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
              P+ S+  W++IISC   +     +L F R+M+   +RPD     S   +C   G++S
Sbjct: 74  EDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSC---GILS 130

Query: 452 EGQ--RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
                +  H +  + G    +     +VD++ + G +  A      MP+R   +  G + 
Sbjct: 131 RCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMY 190

Query: 510 GACRIHGNMELGAVASDRLFE 530
           G  ++  N E   +  + LFE
Sbjct: 191 GYAQMGENEEALWLFKEALFE 211


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/604 (38%), Positives = 372/604 (61%), Gaps = 9/604 (1%)

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
           C SG   EAL    +M + G  +      SIL  C     I  G  +H +++K     ++
Sbjct: 41  CSSGQLKEALL---QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSV 97

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           ++   LI +Y K   +  A  +FD+M +R+VVSW ++I+AY Q      A   F  M ++
Sbjct: 98  YLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRS 157

Query: 225 GIQPDLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             +P+  T  + LTS    L      R +H   ++R  +   + +G++++DMYAK G I 
Sbjct: 158 DTEPNHFTFATILTSCYGSLG-FETGRQIHSIAIKRN-YESHMFVGSSLLDMYAKSGRIC 215

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  VF  LP +DV++   +I+GYAQ GL  EA+++F+ ++    +N N  TY S+L A 
Sbjct: 216 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQ-IEGMNSNSVTYASVLTAL 274

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           S + AL  G ++H+ V+++     V +   L+DMY KCG +  A  +F  +P  + + WN
Sbjct: 275 SGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWN 334

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQ 461
           A++  +  HG   + L  F+ M +E  V+PD IT++++L+ CSH  L   G + +++M+ 
Sbjct: 335 AMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVN 394

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
            + GI+P + HYGC+VDL GRAG +  A +FI+ MP  P A+IWG+LLG+CR+H ++E+G
Sbjct: 395 GKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIG 454

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
            +   +L E++ EN G YV++SN+YA+ GKWE +  +R L +++ + K PG S +E++  
Sbjct: 455 IIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQI 514

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F+  + THP+ E++ ++++ L+ K K  GYVPD S VL DV+E++KE +L  HSE+L
Sbjct: 515 VHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKL 574

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AFG+I++P  + I++ KNLR+C DCH++ KF+S++  R +I+RD NRFH+   G+CSC
Sbjct: 575 ALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSC 634

Query: 702 GDYW 705
           GDYW
Sbjct: 635 GDYW 638



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 247/462 (53%), Gaps = 14/462 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G+L EA+    Q  +  G    F  +  +L  C   R + +G+++H  ++K  +   V++
Sbjct: 44  GQLKEAL---LQMAIL-GREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYL 99

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+ +Y +      AR +FD+MP R+  SW AMIS Y Q G A EAL++  EM     
Sbjct: 100 RTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT 159

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +  T A+IL  C  S    +G  IH   +K   E ++FV ++L++MYAK G +  A  
Sbjct: 160 EPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHG 219

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF  + ERDVV+  +II+ Y Q      A   F  +Q  G+  + +T  S+ + ++ L  
Sbjct: 220 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 279

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             + + VH  ++R G +   V++ N+++DMY+K G +  A  +F+ +P +  ISWN ++ 
Sbjct: 280 LNHGKQVHSHVLRSGQY-SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLV 338

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI--KNC 363
           GY+++G+A E +E+F++M E N++ P+  TY+++L   SH      G++I   ++  K+ 
Sbjct: 339 GYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDG 398

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFF 422
           +  D+    C+VD+ G+ GR+++A     ++P   ++  W +++    +H   +  +   
Sbjct: 399 IEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVG 458

Query: 423 RQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +++L+  + P++   +V L    + +G   + +    +MQE+
Sbjct: 459 QKLLE--LEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 498


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/594 (39%), Positives = 351/594 (59%), Gaps = 5/594 (0%)

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
           EA+D+L++    G + D   +  ++  CA +  +  G  IH ++    L+   F+SN L+
Sbjct: 27  EAVDLLEQSGAAGGTGD---LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLV 83

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           +MY K G +  A RVFD M  ++V SW  ++A + QS   + A   F  M Q G  PD +
Sbjct: 84  DMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRV 143

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
            L+               R +H      G    D++  NA+++MY K G I  A AVF  
Sbjct: 144 ALLKFIDSCGAAKALSQGREIHSAAASCG-MDSDLVTANAIINMYGKCGSIGEAFAVFTR 202

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +P K+VISW+T+I  + QN LA EA+  F++M++   +  ++ TYVS+L AY+ VGAL  
Sbjct: 203 MPEKNVISWSTMIAAFCQNELADEALLFFKLMQQ-EGMELDRITYVSVLDAYTSVGALEL 261

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G  +H R++   L   + V   LV+MYGKCG  DDA  +F  +   + V WNA+++ +G 
Sbjct: 262 GKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +G+  +AL  F  M  EGVRP+ ITFV++L  CSHSG   +   +F  M+++FGI P   
Sbjct: 322 NGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREV 381

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           H+GC++D+ GR+G L  A   IQ MPV  DA +W +LL AC  H + +  A A++  F+ 
Sbjct: 382 HFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQR 441

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           +      Y+++SN+YA + KW+   +VR      G++K  G S IE++ +V  F  G+  
Sbjct: 442 EPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSI 501

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP   +I+  L+ L ++M+  GY PD+  V+  +EE+EK+ +L  HSE+LA+AFGI S+P
Sbjct: 502 HPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTP 561

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P++P+ I KNLRVC DCH+  KFIS +  R I VRDSNRFHHF  G CSCGDYW
Sbjct: 562 PRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 209/410 (50%), Gaps = 13/410 (3%)

Query: 2   ISVYVRCG---RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLG 58
           +S  + CG    + EAVD   Q +  +G   D           + L +G++IH  +    
Sbjct: 13  LSPVLECGGVDAIREAVDLLEQ-SGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGT 71

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            +   F++  L+ MY + G    A+++FD M  ++  SW  +++G+ QSG  VEA+ +  
Sbjct: 72  LDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFH 131

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            M  EG   D + +   +  C  +  +  G  IH      G++ +L  +N +INMY K G
Sbjct: 132 RMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCG 191

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  VF +M E++V+SW+++IAA+ Q+     A  FF  MQQ G++ D +T VS+  
Sbjct: 192 SIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLD 251

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
               +      +++H  I+  G     +++GN +V+MY K G  + A  VF+ +  K+V+
Sbjct: 252 AYTSVGALELGKALHVRIVYAG-LDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVV 310

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK--IH 356
           SWN ++  Y QNG + EA+ +F  M +   + PN  T+V+IL   SH G  +  +   + 
Sbjct: 311 SWNAMLAAYGQNGRSREALALFDSM-DLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVE 369

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            R        +V    CL+DM G+ G++++A  L   +P    VP +A++
Sbjct: 370 MRQDFGITPREVHFG-CLIDMLGRSGKLEEAEELIQAMP----VPADAVL 414



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +++ +V+ GR  EA+  F++     G  PD       + +C   + L  G++IH +    
Sbjct: 113 LMAGFVQSGRGVEAIQLFHRMC-QEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASC 171

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D+  A ++++MY + G    A  +F  MP ++  SW+ MI+ +CQ+  A EAL   
Sbjct: 172 GMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFF 231

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M+ EG+ +D IT  S+L        +  G  +H+ IV  GL+ ++ V N L+NMY K 
Sbjct: 232 KLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKC 291

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A  VFD M+E++VVSWN+++AAY Q+     A   F +M   G++P+ +T V++ 
Sbjct: 292 GSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTIL 351

Query: 238 SIVAQLNDCRNSRSVHGFIMRR--GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV- 294
              +     +++ S H   MR+  G    +V  G  ++DM  + G +  A  + + +PV 
Sbjct: 352 YCCSHSGKFKDAVS-HFVEMRQDFGITPREVHFG-CLIDMLGRSGKLEEAEELIQAMPVP 409

Query: 295 KDVISWNTLI 304
            D + W +L+
Sbjct: 410 ADAVLWTSLL 419


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 364/617 (58%), Gaps = 16/617 (2%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S SWN  +          E++ +   M   G S D  +   IL  CA     +SG  +H 
Sbjct: 15  STSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 74

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV--VSWNSIIAAYEQSNDP 211
           ++++ G E   FV   LI+MY K G++  A +VF++        V +N++I+ Y  ++  
Sbjct: 75  HVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKV 134

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F  M++ G+  D +T++ L  +          RS+HG  ++ G + E V + N+
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSE-VAVLNS 193

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            + MY K G + S   +F+ +PVK +I+WN +I+GY+QNGLA + +E+F+ M+    + P
Sbjct: 194 FITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG-VCP 252

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T VS+L + +H+GA + G ++   V  N    +VF++  L+ MY +CG +  A ++F
Sbjct: 253 DPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVF 312

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P  S V W A+I C+G+HG G+  L  F  M+  G+RPD   FV +L+ACSHSGL  
Sbjct: 313 DIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 372

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G   F  M+ E+ ++P  +HY C+VDL GRAG L  A  FI +MPV PD ++WGALLGA
Sbjct: 373 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+++  +A  ++ E +  N+GYYVLMSNIY++    EG+  +R + R+R  +K P
Sbjct: 433 CKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 492

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G+S +E   KV +F  G+R+H + E+++  L  L   +  L           +++ D  E
Sbjct: 493 GYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELA---------GNMDCDRGE 543

Query: 632 HILTS---HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
            + ++   HSERLAIAFGI++S P + I + KNLRVC DCH + K +S+I +R  +VRD+
Sbjct: 544 EVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDA 603

Query: 689 NRFHHFKDGICSCGDYW 705
           +RFH+FKDG+CSC DYW
Sbjct: 604 SRFHYFKDGVCSCKDYW 620



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 243/470 (51%), Gaps = 18/470 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+  L SG  PD ++FP +LK+C +L   V G+++HC V++ G E + FV  +L+ MYC
Sbjct: 37  LYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYC 96

Query: 75  RFGLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           + GL   ARK+F++ P        +NA+ISGY  +    +A  +   M+  GVS+D +T+
Sbjct: 97  KCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTI 156

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
             ++P+C   + +  G  +H   VK G    + V N+ I MY K G +    R+FD+M  
Sbjct: 157 LGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPV 216

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           + +++WN++I+ Y Q+         F  M+ +G+ PD  TLVS+ S  A L   +  + V
Sbjct: 217 KGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEV 276

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
              +   G F  +V + NA++ MYA+ G +  A AVF+ +PVK ++SW  +I  Y  +G+
Sbjct: 277 GELVEANG-FAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGM 335

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA- 371
               + +F  M +   I P+   +V +L A SH G   +G+++  R +K     +     
Sbjct: 336 GETGLTLFDDMIK-RGIRPDGAVFVMVLSACSHSGLTDKGLELF-RAMKREYKLEPGPEH 393

Query: 372 -TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            +CLVD+ G+ GR+D+AM     +P       W A++    IH   D A   F ++++  
Sbjct: 394 YSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE-- 451

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE--FGIKP---HLKHYG 474
             P +I +  L++         EG     +M  E  F  KP   +++H G
Sbjct: 452 FEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 501



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 156/315 (49%), Gaps = 19/315 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y    ++S+A   F +   T G+  D  T   ++  C     L  G+ +H   +K 
Sbjct: 124 LISGYTANSKVSDAAFMFRRMKET-GVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG 182

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V V  S + MY + G     R+LFD+MPV+   +WNA+ISGY Q+G A + L++ 
Sbjct: 183 GTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELF 242

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M+  GV  DP T+ S+L  CA       G  +   +  +G   N+F+SN LI+MYA+ 
Sbjct: 243 EQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARC 302

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD M  + +VSW ++I  Y       T    F  M + GI+PD    V + 
Sbjct: 303 GNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVL 362

Query: 238 SIVAQ--LNDCRNSRSVHGF-IMRRGWFMEDVIIG----NAVVDMYAKLGIINSACAVFE 290
           S  +   L D    + +  F  M+R + +E    G    + +VD+  + G ++ A    +
Sbjct: 363 SACSHSGLTD----KGLELFRAMKREYKLEP---GPEHYSCLVDLLGRAGRLDEAMEFID 415

Query: 291 GLPVK-DVISWNTLI 304
            +PV+ D   W  L+
Sbjct: 416 SMPVEPDGAVWGALL 430


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 360/621 (57%), Gaps = 52/621 (8%)

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
           P + A I     R + I  G   H  IV HGL+ N F++  ++ MYA  G +  A+ VFD
Sbjct: 77  PSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFD 136

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGF----------FTTMQQAGIQPDLLTLVSLTS 238
           ++     + +NSII AY       T HG           +  M   G+  D  TL  +  
Sbjct: 137 RIDNPSSLLYNSIIRAY-------TRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLK 189

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A L+     R VHG  +R G    D  +G +++DMY K G+I  A  +F+ + V+D+ 
Sbjct: 190 SCADLSRVCMGRCVHGQGLRVG-LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMA 248

Query: 299 SWNTLI-------------------------------TGYAQNGLASEAIEVF-QMMEEC 326
           SWN LI                               +GY QNG A +A+ +F +M+++ 
Sbjct: 249 SWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDG 308

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           +E+ PN  T VS+LPA +   AL +G +IH       L  +  V T L  MY KC  + +
Sbjct: 309 SEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVE 368

Query: 387 AMSLFYQVPRSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           A   F  + ++    + WN +I+ +  HG G +A++ F  ML  GV+PD +TF+ LL+ C
Sbjct: 369 ARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGC 428

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHSGL+  G  +F+ M     ++P ++HY C+VDL GRAG L  A   I  MP++   S+
Sbjct: 429 SHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSV 488

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WGALL ACR H N+E+  +A+ RLF ++ +N G YVL+SN+YA  G WE V ++R+L + 
Sbjct: 489 WGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKY 548

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G+KK+PG S IE+N K  +F   +++HP+ ++IY  L  L  K+K  GY+PD SFVL D
Sbjct: 549 QGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHD 608

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           + E+EKE+ LT+HSE+LAIAFG++++ P   +++ KNLR+CGDCH  TKFIS+I EREII
Sbjct: 609 ISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREII 668

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD NRFH FKDG CSCGDYW
Sbjct: 669 VRDLNRFHCFKDGSCSCGDYW 689



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 173/381 (45%), Gaps = 61/381 (16%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL  D +T P VLK+C +L     G+ +H   L++G E D +V ASL+ MY + G+   A
Sbjct: 176 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 235

Query: 83  RKLFDDMPVRDSGSWN-------------------------------AMISGYCQSGNAV 111
           RKLFD M VRD  SWN                               AMISGY Q+G A 
Sbjct: 236 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 295

Query: 112 EALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
           +AL + DEM  +G  M P  +T+ S+LP CA+S  +  G  IH +    GL  N  V   
Sbjct: 296 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 355

Query: 170 LINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           L  MYAK   +  A   FD + +  +++++WN++I AY      + A   F  M +AG+Q
Sbjct: 356 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 415

Query: 228 PDLLTLVSLTS-------IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           PD +T + L S       I A LN   +  ++H    R   +         VVD+  + G
Sbjct: 416 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYA-------CVVDLLGRAG 468

Query: 281 IINSACAVFEGLPVKDVIS-WNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            +  A  +   +P++   S W  L+     +    +A  A     ++E       N G Y
Sbjct: 469 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEP-----DNSGNY 523

Query: 337 VSILPAYSHVGALRQGIKIHA 357
           V +   Y+  G   +  K+ A
Sbjct: 524 VLLSNLYAEAGMWEEVKKLRA 544



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 187/402 (46%), Gaps = 44/402 (10%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G++ H  ++  G + + F+AA ++ MY   G  + A  +FD +    S  +N++I  Y +
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 107 SGNAVEALDILD---EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
            G        L+    M   G+  D  T+  +L  CA    +  G  +H   ++ GLE +
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGD 215

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA-------------------- 203
            +V  +LI+MY K G++  A ++FD+M+ RD+ SWN++IA                    
Sbjct: 216 FYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEH 275

Query: 204 -----------AYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSR 250
                       Y Q+     A G F  M Q G  ++P+ +T+VS+    AQ       R
Sbjct: 276 RNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 335

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYA 308
            +H F    G  +    +  A+  MYAK   +  A   F+ +    K++I+WNT+IT YA
Sbjct: 336 RIHDFANGIGLHLNSS-VQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +G   EA+ +F+ M     + P+  T++ +L   SH G +  G+  H   +      + 
Sbjct: 395 SHGCGVEAVSIFENMLRAG-VQPDAVTFMGLLSGCSHSGLIDAGLN-HFNDMGTIHSVEP 452

Query: 369 FVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
            V    C+VD+ G+ GR+ +A  L  Q+P ++    W A+++
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 8/249 (3%)

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+  +Y  I    +    ++ G + HA+++ + L  + F+A  +V MY   G +D A+ +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 391 FYQVPRSSSVPWNAIISCHGIHG---QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           F ++   SS+ +N+II  +  HG        L  + +M   G+  D+ T   +L +C+  
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             V  G R  H      G++        ++D++ + G +G A      M VR D + W A
Sbjct: 195 SRVCMG-RCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNA 252

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           L+      G  E+G VA D    ++  N+  +  M + Y   G  E    +       G 
Sbjct: 253 LIAGYMKEG--EIG-VAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGS 309

Query: 568 KKTPGWSSI 576
           +  P W +I
Sbjct: 310 EMKPNWVTI 318


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/587 (40%), Positives = 356/587 (60%), Gaps = 3/587 (0%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR  G   +  T +SIL   A +  +L G  +H  I KHG + N+FV   L++MYAK   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT-TMQQAGIQPDLLTLVSLTS 238
           M  A+RVFDQM ER++VSWNS+I  +  +N    A G F   +++  + P+ +++ S+ S
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A +      R VHG +++ G  +    + N+++DMY K    +    +F+ +  +DV+
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFG-LVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVV 179

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           +WN L+ G+ QN    EA   F +M     I P++ ++ ++L + + + AL QG  IH +
Sbjct: 180 TWNVLVMGFVQNDKFEEACNYFWVMRR-EGILPDEASFSTVLHSSASLAALHQGTAIHDQ 238

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           +IK     ++ +   L+ MY KCG + DA  +F  +   + + W A+IS + +HG  ++ 
Sbjct: 239 IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQV 298

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           +  F  ML EG+ P H+TFV +L+ACSH+G V EG  +F+ M++   + P  +HY CMVD
Sbjct: 299 IELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVD 358

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L GRAG L  A  FI++MP++P  S+WGALLGACR +GN+++G  A++RLFE++  N G 
Sbjct: 359 LLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN 418

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL++N+    G+ E  +EVR L    G++K PG S I+V N   +F   +R+H   ++I
Sbjct: 419 YVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEI 478

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y  L  L   +K  GYV +  FV   +EE+E+E  L  HSE+LA+AFG+++ P  SPI+I
Sbjct: 479 YKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRI 538

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLR CG CH   K  S+I +REIIVRD NRFH F DG CSCGDYW
Sbjct: 539 KKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 234/461 (50%), Gaps = 21/461 (4%)

Query: 25  SGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           SG  P+ +TF  +L A      ++ G+++H  + K GF+ ++FV  +L+ MY +    + 
Sbjct: 4   SGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHS 63

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL-DEMRLEGVSMDPITVASILPVCA 140
           A ++FD MP R+  SWN+MI G+  +     A+ +  D +R + V  + ++V+S+L  CA
Sbjct: 64  AVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACA 123

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               +  G  +H  +VK GL    +V N+L++MY K       +++F  + +RDVV+WN 
Sbjct: 124 NMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNV 183

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           ++  + Q++    A  +F  M++ GI PD  +  ++    A L       ++H  I++ G
Sbjct: 184 LVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLG 243

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           +     I+G +++ MYAK G +  A  VFEG+   +VISW  +I+ Y  +G A++ IE+F
Sbjct: 244 YVKNMCILG-SLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELF 302

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMY 378
           + M     I P+  T+V +L A SH G + +G+  H   +K     +       C+VD+ 
Sbjct: 303 EHMLS-EGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACMVDLL 360

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDH 434
           G+ G +D+A      +P + +   W A++     +G    G +A     +M  E   P +
Sbjct: 361 GRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEM--EPYNPGN 418

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             +V L   C+ SG + E      +M    G+    K  GC
Sbjct: 419 --YVLLANMCTRSGRLEEANEVRRLM----GVNGVRKEPGC 453



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 159/352 (45%), Gaps = 18/352 (5%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLL 70
           AV  F        + P+  +   VL AC N+     G+++H  V+K G     +V  SL+
Sbjct: 95  AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLM 154

Query: 71  HMY--CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
            MY  CRF    V  KLF  +  RD  +WN ++ G+ Q+    EA +    MR EG+  D
Sbjct: 155 DMYFKCRFFDEGV--KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPD 212

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             + +++L   A    +  G  IH  I+K G   N+ +  +LI MYAK G +  A +VF+
Sbjct: 213 EASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFE 272

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            + + +V+SW ++I+AY+           F  M   GI+P  +T V + S  +       
Sbjct: 273 GIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEE 332

Query: 249 SRSVHGFIMRRGWFMEDVIIG----NAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTL 303
             + H   M++   + D+  G      +VD+  + G ++ A    E +P+K   S W  L
Sbjct: 333 GLA-HFNSMKK---IHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL 388

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +    + G      E  + + E    NP  G YV +    +  G L +  ++
Sbjct: 389 LGACRKYGNLKMGREAAERLFEMEPYNP--GNYVLLANMCTRSGRLEEANEV 438


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/719 (33%), Positives = 405/719 (56%), Gaps = 59/719 (8%)

Query: 35  PPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS 94
           PP L+A         +H    K G    +  A  LL +Y +    + A KLFD++  +++
Sbjct: 48  PPSLRA---------LHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNT 98

Query: 95  GSWNAMISGYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
            +W  +ISG+ ++  + E    +  EM+ +G   +  T++S+L  C+R +NI  G  IH 
Sbjct: 99  QTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHA 158

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           +I+++G+  ++ + N+++++Y K     +A   F+ M+E+DVVSWN +I AY +  D   
Sbjct: 159 WILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEK 218

Query: 214 AHGFFTT-------------------------------MQQAGIQPDLLTLVSLTSIVAQ 242
           +   F                                 M   G +   +T      +V+ 
Sbjct: 219 SLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSS 278

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK------- 295
           L+     R +HG ++  G    D  I +++V+MY K G ++ A  + + +P+        
Sbjct: 279 LSLVEVGRQLHGRVLTFG-LNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNF 337

Query: 296 ---------DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
                     ++SW+++++GY  NG   + ++ F+ M  C  I  +  T  +I+ A ++ 
Sbjct: 338 GVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMV-CELIVVDIRTVATIISACANA 396

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G L  G +IHA + K  L  D +V + L+DMY K G +DDA+ +F Q+   + V W ++I
Sbjct: 397 GILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMI 456

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S   +HGQG +A++ F  ML+ G+ P+ +TFV +L ACSH GL+ EG RYF MM++ + I
Sbjct: 457 SGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHI 516

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HY  MV+L+GRAGHL  A NFI    +    S+W + L +CR+H N  +G   S+
Sbjct: 517 NPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSE 576

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L +    +   Y+L+SN+ ++  +W+    VRSL   RG+KK PG S +++ +++  F 
Sbjct: 577 MLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFT 636

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+R+HP+ ++IY  L +L  ++K +GY  D   V+QDVEE++ E +++ HSE+LA+ F 
Sbjct: 637 VGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFS 696

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           II++ P++PI+I KNLR+C DCHN+ K+ SQ+ EREIIVRD++RFHHFK   CSCG+YW
Sbjct: 697 IINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 225/499 (45%), Gaps = 59/499 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS + R    SE V   ++     G  P+ YT   VLK C    N+  GK IH  +L+ 
Sbjct: 104 LISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRN 163

Query: 58  GFEWDVFVAASLLHM-------------------------------YCRFGLANVARKLF 86
           G   DV +  S+L +                               Y R G    + ++F
Sbjct: 164 GVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMF 223

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
            + P +D  SWN +I G  Q G    AL+ L  M   G    P+T +  L + +    + 
Sbjct: 224 RNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVE 283

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM---------------- 190
            G  +H  ++  GL  + ++ ++L+ MY K G M  A  +   +                
Sbjct: 284 VGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKE 343

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +  +VSW+S+++ Y  +         F +M    I  D+ T+ ++ S  A        +
Sbjct: 344 PKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGK 403

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H +I + G  + D  +G++++DMY+K G ++ A  +FE +   +V+ W ++I+G A +
Sbjct: 404 QIHAYIQKIGLRI-DAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALH 462

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EAI +F+ M     I PN+ T+V +L A SHVG + +G + + R++K+    +  V
Sbjct: 463 GQGKEAISLFEGMLNLG-IIPNEVTFVGVLNACSHVGLIEEGCR-YFRMMKDTYHINPEV 520

Query: 371 A--TCLVDMYGKCGRIDDAMSLFYQ--VPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
              T +V++YG+ G + +A +  ++  +   +SV W + +S   +H   +   +   +ML
Sbjct: 521 EHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSV-WRSFLSSCRLHKNFNMGKS-VSEML 578

Query: 427 DEGVRPDHITFVSLLTACS 445
            +    D   ++ L   CS
Sbjct: 579 LQSAPSDPDAYILLSNMCS 597


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/718 (33%), Positives = 402/718 (55%), Gaps = 18/718 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y R G    A++ F +    +GLR D +T+   L AC   +D   GK +H   +  
Sbjct: 73  LISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLD 132

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VF++ SL  MY   G    AR++FD     D  SWN+++SGY ++G   E L + 
Sbjct: 133 GLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVF 192

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYA 175
             M   G+  +   + SI+  CA   ++   +   +H  +VK GL+ +LF+++ +I+MYA
Sbjct: 193 SLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYA 252

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI------TAHGFFTTMQQAGIQPD 229
           K G + +A+ +F  + + +V+ +N++IA + +    +       A   ++ MQ  G+QP 
Sbjct: 253 KRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPS 312

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T  S+        +    + +HG +++   F +D  IG+A++D+Y+  G +      F
Sbjct: 313 EFTFSSILRACNLAGEFGFGKQIHGQVLKHS-FHDDDYIGSALIDLYSDSGCMEDGYRCF 371

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             LP +D+++W ++I+G  QN L  +A+ +FQ    C  + P+  T  S++ A + +   
Sbjct: 372 RSLPKQDIVTWTSMISGCVQNELFEKALRLFQE-SICYGLKPDLFTMSSVMNACASLAVA 430

Query: 350 RQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           R G +I    IK    F+ F A     + M  + G +D     F ++     V W+A+IS
Sbjct: 431 RTGEQIQCLAIK--YGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVIS 488

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            H  HG    AL  F +M++  V P+ +TF+++LTACSH GLV +G RY+ +M+ E+G+ 
Sbjct: 489 SHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLS 548

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P +KH  C+VDL GRAG L  A  FI++     DA +W +LL +CRIHG+ME G + +D+
Sbjct: 549 PTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQ 608

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           + +++  +   YV++ N+Y + G+     + R L ++RG+KK PG S IE+ + V  F  
Sbjct: 609 IMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVA 668

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+++HP+   IY +L  + +K++ L    + S     +   E ++++  HSE++A+AFG+
Sbjct: 669 GDKSHPESNAIYKKLAEMLSKIEKLANTDNASTGSDGISSSE-QNLVGCHSEKIAVAFGM 727

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I  P  +PI++ KNLRVC DCH+  K IS    REII+RD  RFHHF+ G CSCGDYW
Sbjct: 728 IHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHFRGGSCSCGDYW 785



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 248/491 (50%), Gaps = 15/491 (3%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           +L++C  L     +H  + +      +F+  SLL  YCR G+     A +L D+MP R++
Sbjct: 8   LLRSCTALPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNA 67

Query: 95  GSWNAMISGYCQSGNAVEALDIL-DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
            S+N +IS Y ++G    AL+         G+ +D  T A+ L  C+R+ ++ +G  +H 
Sbjct: 68  VSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHA 127

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             V  GL   +F+SN+L +MYA  G M  A RVFD   E D VSWNS+++ Y ++     
Sbjct: 128 MTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREE 187

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNA 271
               F+ M   G+  +   L S+    A  +D     + +VHG +++ G    D+ + +A
Sbjct: 188 TLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAG-LDADLFLASA 246

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA------SEAIEVFQMMEE 325
           ++DMYAK G + +A A+F+ +P  +VI +N +I G+ ++  A       EA+ ++  M+ 
Sbjct: 247 MIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQS 306

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              + P++ T+ SIL A +  G    G +IH +V+K+    D ++ + L+D+Y   G ++
Sbjct: 307 -RGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCME 365

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           D    F  +P+   V W ++IS    +   +KAL  F++ +  G++PD  T  S++ AC+
Sbjct: 366 DGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACA 425

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
              +   G++    +  ++G           + +  R+G +       Q M  R D   W
Sbjct: 426 SLAVARTGEQ-IQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESR-DVVSW 483

Query: 506 GALLGACRIHG 516
            A++ +   HG
Sbjct: 484 SAVISSHAQHG 494


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 343/543 (63%), Gaps = 2/543 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N LIN + + G +  A++VFD+M+ER+V +WN++++   Q          F  M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G  PD  TL S+    A L      + VH ++++ G+   ++++G+++  MY K G +
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEF-NLVVGSSLAHMYMKSGSL 140

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                V + + +++V++WNTLI G AQNG     ++++ MM+  + + P++ T VS++ +
Sbjct: 141 GEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMK-MSGLRPDKITLVSVISS 199

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + +  L QG +IHA  IK      V V + L+ MY KCG ++D+M          SV W
Sbjct: 200 SAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLW 259

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +++I+ +G HG+G++A++ F QM  EG+  + +TF+SLL ACSH+GL  +G  +F +M E
Sbjct: 260 SSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVE 319

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           ++G+KP L+HY C+VDL GR+G L  A   I++MP+  D  IW  LL ACRIH N ++  
Sbjct: 320 KYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMAT 379

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             ++ +  ++ ++   YVL+SNI+A+  +W+ V +VR+  RDR +KK PG S +EV N+V
Sbjct: 380 RTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRV 439

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F  G+++HP  E+I   L+ L  +MK  GYVPD + V  D + +EKE+ L +HSE+LA
Sbjct: 440 FQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLA 499

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAFG+++ PP SPI++ KNLR+C DCH   K IS I  REIIVRD++RFHHFK G CSCG
Sbjct: 500 IAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCG 559

Query: 703 DYW 705
           DYW
Sbjct: 560 DYW 562



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 185/360 (51%), Gaps = 4/360 (1%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++ + + G  + A K+FD+M  R+  +WNAM+SG  Q       L +  EM   G   D
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPD 88

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+L  CA      +G  +H Y++K+G EFNL V ++L +MY K G +    +V  
Sbjct: 89  EFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIK 148

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  R+VV+WN++IA   Q+         +  M+ +G++PD +TLVS+ S  A+L     
Sbjct: 149 AMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQ 208

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   ++ G     V + ++++ MY+K G +  +          D + W+++I  Y 
Sbjct: 209 GQQIHAEAIKAG-ANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYG 267

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFD 367
            +G   EA+ +F+ ME+   +  N  T++S+L A SH G   +G+     ++ K  L   
Sbjct: 268 FHGRGEEAVHLFEQMEQ-EGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPR 326

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQML 426
           +   TC+VD+ G+ G +D+A ++   +P  + V  W  ++S   IH   D A     ++L
Sbjct: 327 LEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEIL 386



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 158/329 (48%), Gaps = 8/329 (2%)

Query: 26  GLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD +T   VL+ C  L     GK++H  VLK G+E+++ V +SL HMY + G     
Sbjct: 84  GFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEG 143

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            K+   M +R+  +WN +I+G  Q+G+    LD+ + M++ G+  D IT+ S++   A  
Sbjct: 144 EKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAEL 203

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH   +K G    + V ++LI+MY+K G +  +++        D V W+S+I
Sbjct: 204 ATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMI 263

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           AAY        A   F  M+Q G+  + +T +SL    +              ++ +   
Sbjct: 264 AAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGL 323

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQ 321
              +     VVD+  + G ++ A A+   +P++ DV+ W TL++    +  A  A    +
Sbjct: 324 KPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMAT---R 380

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALR 350
             EE   +NP Q +   +L +  H  A R
Sbjct: 381 TAEEILRLNP-QDSATYVLLSNIHASAKR 408



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 150/330 (45%), Gaps = 42/330 (12%)

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN------- 327
           MY K+G I  A A F  +P+++++S N LI G+ Q+G    AI+VF  M E N       
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 328 -------EIN----------------PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
                  E N                P++ T  S+L   + + A   G ++HA V+K   
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
            F++ V + L  MY K G + +   +   +   + V WN +I+ +  +G  +  L+ +  
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M   G+RPD IT VS++++ +    + +GQ+  H    + G    +     ++ ++ + G
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQ-IHAEAIKAGANSAVAVLSSLISMYSKCG 239

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGY--YVL 541
            L  +   + +    PD+ +W +++ A   HG  E        LFE ++ E +G      
Sbjct: 240 CLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGEEAV----HLFEQMEQEGLGGNDVTF 294

Query: 542 MSNIYA---NVGKWEGVDEVRSLARDRGLK 568
           +S +YA   N  K +G+   + +    GLK
Sbjct: 295 LSLLYACSHNGLKEKGMGFFKLMVEKYGLK 324



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 5/197 (2%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASL 69
           E V   Y     SGLRPD  T   V+ +   L     G++IH   +K G    V V +SL
Sbjct: 172 EGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSL 231

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + MY + G    + K   D    DS  W++MI+ Y   G   EA+ + ++M  EG+  + 
Sbjct: 232 ISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGND 291

Query: 130 ITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
           +T  S+L  C+ +     G+    L + K+GL+  L     ++++  + G +  A  +  
Sbjct: 292 VTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIR 351

Query: 189 QM-MERDVVSWNSIIAA 204
            M +E DVV W ++++A
Sbjct: 352 SMPLEADVVIWKTLLSA 368


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/602 (39%), Positives = 362/602 (60%), Gaps = 44/602 (7%)

Query: 141 RSDNILSGLLIHLYIVKHGLEFNL---FVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           +S ++   L IH  I++H L  +     ++  L   YA  G +RH+L +F Q ++ D+  
Sbjct: 38  KSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFL 97

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC--RNSRSVHGF 255
           + + I     +     A   +  +  + I P+  T  SL      L  C  ++ + +H  
Sbjct: 98  FTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSL------LKSCSTKSGKLIHTH 151

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-------------------- 295
           +++ G  + D  +   +VD+YAK G + SA  VF+ +P +                    
Sbjct: 152 VLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEA 210

Query: 296 -----------DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
                      D++SWN +I GYAQ+G  ++A+ +FQ +    +  P++ T V+ L A S
Sbjct: 211 ARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACS 270

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +GAL  G  IH  V  + +  +V V T L+DMY KCG +++A+ +F   PR   V WNA
Sbjct: 271 QIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNA 330

Query: 405 IISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +I+ + +HG    AL  F +M    G++P  ITF+  L AC+H+GLV+EG R F  M +E
Sbjct: 331 MIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQE 390

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +GIKP ++HYGC+V L GRAG L  A+  I+NM +  D+ +W ++LG+C++HG+  LG  
Sbjct: 391 YGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKE 450

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
            ++ L  ++ +N G YVL+SNIYA+VG +EGV +VR+L +++G+ K PG S+IE+ NKV 
Sbjct: 451 IAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVH 510

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
            F  G+R H K ++IY  LR ++ ++KS GYVP+ + VLQD+EE EKE  L  HSERLAI
Sbjct: 511 EFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAI 570

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           A+G+IS+ P SP++IFKNLRVC DCH  TK IS+IT R+I++RD NRFHHF DG CSCGD
Sbjct: 571 AYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGD 630

Query: 704 YW 705
           +W
Sbjct: 631 FW 632



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 156/323 (48%), Gaps = 39/323 (12%)

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           ++ +  T +S+L  C+      SG LIH +++K GL  + +V+  L+++YAK G +  A 
Sbjct: 126 INPNEFTFSSLLKSCSTK----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQ 181

Query: 185 RVFDQ-------------------------------MMERDVVSWNSIIAAYEQSNDPIT 213
           +VFD+                               M ERD+VSWN +I  Y Q   P  
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241

Query: 214 AHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
           A   F  +   G  +PD +T+V+  S  +Q+      R +H F+ +      +V +   +
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFV-KSSRIRLNVKVCTGL 300

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DMY+K G +  A  VF   P KD+++WN +I GYA +G + +A+ +F  M+    + P 
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
             T++  L A +H G + +GI+I   + +   +   +    CLV + G+ G++  A    
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 392 YQVPR-SSSVPWNAIISCHGIHG 413
             +   + SV W++++    +HG
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHG 443



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 34/250 (13%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
            Y   L+S + P+ +TF  +LK+C +   GK IH  VLK G   D +VA  L+ +Y + G
Sbjct: 117 LYVQLLSSEINPNEFTFSSLLKSC-STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGG 175

Query: 78  LANVARKLFDDMPVR-------------------------------DSGSWNAMISGYCQ 106
               A+K+FD MP R                               D  SWN MI GY Q
Sbjct: 176 DVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQ 235

Query: 107 SGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            G   +AL +  ++  EG    D ITV + L  C++   + +G  IH+++    +  N+ 
Sbjct: 236 HGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK 295

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-A 224
           V   LI+MY+K G +  A+ VF+    +D+V+WN++IA Y        A   F  MQ   
Sbjct: 296 VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT 355

Query: 225 GIQPDLLTLV 234
           G+QP  +T +
Sbjct: 356 GLQPTDITFI 365



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 17/275 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y + G  ++A+  F +       +PD  T    L AC     L  G+ IH  V   
Sbjct: 229 MIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS 288

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               +V V   L+ MY + G    A  +F+D P +D  +WNAMI+GY   G + +AL + 
Sbjct: 289 RIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLF 348

Query: 118 DEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYI-VKHGLEFNLFVSNNLINMYA 175
           +EM+ + G+    IT    L  CA +  +  G+ I   +  ++G++  +     L+++  
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND-----PITAHGFFTTMQQAGIQPD 229
           + G ++ A      M M+ D V W+S++ + +   D      I  +     ++ +GI   
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGI--- 465

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
               V L++I A + D      V   +  +G   E
Sbjct: 466 ---YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE 497


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 355/578 (61%), Gaps = 5/578 (0%)

Query: 122 LEG--VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           LEG  +  D     ++L  C     ++ G ++H +I++     ++ + N L+NMYAK G 
Sbjct: 51  LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VF++M +RD V+W ++I+ Y Q + P  A  FF  M + G  P+  TL S+   
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A          +HGF ++ G F  +V +G+A++D+Y + G+++ A  VF+ L  ++ +S
Sbjct: 171 AAAERRGCCGHQLHGFCVKCG-FDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN LI G+A+     +A+E+FQ M   +   P+  +Y S+  A S  G L QG  +HA +
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLR-DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           IK+      F    L+DMY K G I DA  +F ++ +   V WN++++ +  HG G +A+
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAV 348

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
            +F +M   G+RP+ I+F+S+LTACSHSGL+ EG  Y+ +M+++ GI P   HY  +VDL
Sbjct: 349 WWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDL 407

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  A  FI+ MP+ P A+IW ALL ACR+H N ELGA A++ +FE+D ++ G +
Sbjct: 408 LGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPH 467

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           V++ NIYA+ G+W     VR   ++ G+KK P  S +E+ N + +F   +  HP+ E+I 
Sbjct: 468 VILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIA 527

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
            +   + AK+K LGYVPD S V+  V++ E+E  L  HSE++A+AF ++++PP S I I 
Sbjct: 528 RKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIK 587

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           KN+RVCGDCH   K  S++  REIIVRD+NRFHHFKD 
Sbjct: 588 KNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 207/383 (54%), Gaps = 6/383 (1%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +LK C   + L+ G+ +H  +L+  F  D+ +  +LL+MY + G    ARK+F+ MP
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            RD  +W  +ISGY Q     +AL   ++M   G S +  T++S++   A       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H + VK G + N+ V + L+++Y ++G+M  A  VFD +  R+ VSWN++IA + + + 
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   F  M + G +P   +  SL    +        + VH ++++ G  +     GN
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV-AFAGN 301

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
            ++DMYAK G I+ A  +F+ L  +DV+SWN+L+T YAQ+G   EA+  F+ M     I 
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-IR 360

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           PN+ +++S+L A SH G L +G   +  + K+ +  + +    +VD+ G+ G ++ A+  
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRF 420

Query: 391 FYQVP-RSSSVPWNAIISCHGIH 412
             ++P   ++  W A+++   +H
Sbjct: 421 IEEMPIEPTAAIWKALLNACRMH 443



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 189/378 (50%), Gaps = 38/378 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y +  R  +A+  F+   L  G  P+ +T   V+KA    R    G ++H   +K 
Sbjct: 132 LISGYSQHDRPCDAL-LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC 190

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V V ++LL +Y R+GL + A+ +FD +  R+  SWNA+I+G+ +     +AL++ 
Sbjct: 191 GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF 250

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  +G      + AS+   C+ +  +  G  +H Y++K G +   F  N L++MYAK 
Sbjct: 251 QGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS 310

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A ++FD++ +RDVVSWNS++ AY Q      A  +F  M++ GI+P+ ++ +S+ 
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW-----FMEDVIIGNA-----VVDMYAKLGIINSACA 287
           +  +           H  ++  GW       +D I+  A     VVD+  + G +N A  
Sbjct: 371 TACS-----------HSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 288 VFEGLPVKDVIS-WNTLITG---YAQNGLASEAIE-VFQMMEECNEINPNQ-GTYVSILP 341
             E +P++   + W  L+     +    L + A E VF       E++P+  G +V +  
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVF-------ELDPDDPGPHVILYN 472

Query: 342 AYSHVGALRQGIKIHARV 359
            Y+  G      ++  ++
Sbjct: 473 IYASGGRWNDAARVRKKM 490


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/659 (35%), Positives = 364/659 (55%), Gaps = 68/659 (10%)

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           + +   M  +G+  D   + +++  CA    + +G  +H + +  GL  +  V ++L++M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 174 YAKFGMMRHALRVFDQM-----------------------------------MERDVVSW 198
           Y +F  ++ A  VFD++                                   +E ++VSW
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N +I+ + +S   + A   F  M   G++PD  ++ S+   V  L+       +H ++++
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
           +G    D  + +A++DMY K    +    VF  +   DV + N L+TG ++NGL   A+E
Sbjct: 239 QG-LGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 319 VFQ--------------MMEECNE------------------INPNQGTYVSILPAYSHV 346
           VF+              M+  C++                  + PN  T   +LPA  ++
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNI 357

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            AL  G   H   ++N +  DV+V + L+DMY KCGR+  +   F  +P  + V WN+++
Sbjct: 358 AALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLM 417

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           + + +HG+  +A+N F  M   G +PDH++F  +L+AC+  GL  EG  YF  M    G+
Sbjct: 418 AGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGV 477

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           +  ++HY CMV L GR+G L  A+  I+ MP  PD+ +WGALL +CR+H  ++LG +A+ 
Sbjct: 478 EARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAK 537

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           R+FE++  N G Y+L+SNIYA+   W  VD VR + R RGLKK PG+S IE+ NKV +  
Sbjct: 538 RVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLL 597

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+ +HP+  +I ++L  LT +MK  GYVP   FVLQDVEE +KE IL  HSE+LA+  G
Sbjct: 598 AGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLG 657

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++++ P  P+Q+ KNLR+C DCH   KFIS   +REI VRD+NRFH FK G+CSCGDYW
Sbjct: 658 LLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 233/471 (49%), Gaps = 75/471 (15%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           + + LT G+ PD    P V+K C     L  GK++HC  L  G   D  V +SLLHMY +
Sbjct: 62  FSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQ 121

Query: 76  FGLANVARKLFDDMP-----------------------------VRDSG------SWNAM 100
           F     AR +FD +P                              RD G      SWN M
Sbjct: 122 FDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGM 181

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           ISG+ +SG+ ++A+ +   M LEG+  D  +V+S+LP     D  L G+ IH Y++K GL
Sbjct: 182 ISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGL 241

Query: 161 EFNLFVSNNLINMYAKF-------------------------------GMMRHALRVFDQ 189
             + FV + LI+MY K                                G++ +AL VF Q
Sbjct: 242 GPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQ 301

Query: 190 M--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
              M+ +VVSW S+IA+  Q+   + A   F  MQ  G++P+ +T+  L      +    
Sbjct: 302 FKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALL 361

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
           + ++ H F +R G F  DV +G+A++DMYAK G + ++   F+ +P ++++SWN+L+ GY
Sbjct: 362 HGKAAHCFSLRNGIF-NDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGY 420

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCF 366
           A +G   EAI +F++M+ C +  P+  ++  +L A +  G   +G      + +N  +  
Sbjct: 421 AMHGKTFEAINIFELMQRCGQ-KPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEA 479

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
            +   +C+V + G+ GR+++A ++  Q+P    S  W A++S   +H + D
Sbjct: 480 RMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVD 530



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 161/353 (45%), Gaps = 60/353 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS + R G   +AV  F    L  GL+PD  +   VL A  +L   + G +IHC V+K 
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHL-EGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQ 239

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG---------------------- 95
           G   D FV ++L+ MY +   A+    +F++M   D G                      
Sbjct: 240 GLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVF 299

Query: 96  -----------SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
                      SW +MI+   Q+G  +EAL++  EM++EGV  + +T+  +LP C     
Sbjct: 300 KQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAA 359

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +L G   H + +++G+  +++V + LI+MYAK G M  +   FD M  R++VSWNS++A 
Sbjct: 360 LLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAG 419

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y        A   F  MQ+ G +PD ++   + S   Q           G +   GWF  
Sbjct: 420 YAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQ-----------GGLTEEGWFYF 468

Query: 265 DVIIGN-----------AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLIT 305
           D +  N            +V +  + G +  A A+ + +P + D   W  L++
Sbjct: 469 DSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLS 521


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 369/626 (58%), Gaps = 52/626 (8%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQ-SGNAVEALDILDEMRLEGVSMDPITVA-SILPVC 139
           AR +F+ M VR + +WN M+SGY + +G   EA ++ D++       +P +V+ +I+ VC
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP------EPDSVSYNIMLVC 145

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
                         Y+  +G+E                     AL  F++M  +D+ SWN
Sbjct: 146 --------------YLRSYGVE--------------------AALAFFNKMPVKDIASWN 171

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I+ + Q+     A   F+ M +     + ++  ++ S   +  D   +  ++     +
Sbjct: 172 TLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELY-----K 222

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
              M+ V++  A++  Y K G +  A  +F+ + VK++++WN++I GY +N  A + ++V
Sbjct: 223 NVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKV 282

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ M E + + PN  +  S+L   S++ AL  G ++H  V K+ L  D    T L+ MY 
Sbjct: 283 FKTMIE-SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYC 341

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCG +D A  LF ++PR   + WNA+IS +  HG G KAL+ F +M +  ++PD ITFV+
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVA 401

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           ++ AC+H+G V  G +YF  M++EFGI+    HY C++DL GRAG L  A + I+ MP +
Sbjct: 402 VILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P A+I+G LLGACRIH N++L   A+  L  +D  +   YV ++NIYA   KW+ V +VR
Sbjct: 462 PHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVR 521

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
            + ++  + K PG+S IE+ +    F + +R HP+   I+ +L  L  KMK  GYVPD  
Sbjct: 522 KMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLE 581

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
           F L DVEE+ KE +L  HSE+LAIAFG++ + P +PI++FKNLRVCGDCH   KFIS I 
Sbjct: 582 FALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIE 641

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           +REIIVRD+ RFHHF++G CSCGDYW
Sbjct: 642 KREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 186/373 (49%), Gaps = 36/373 (9%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSM 127
           +L  Y R      A   F+ MPV+D  SWN +ISG+ Q+G   +A D+   M    GVS 
Sbjct: 142 MLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201

Query: 128 DPITVASILPVCARSDNILSGLLIH--------LYIVKHGLEFNLFVSNNLINMYAKFGM 179
                            ++SG + H        LY  K+    ++ V   ++  Y KFG 
Sbjct: 202 SA---------------MISGYVEHGDLEAAEELY--KNVGMKSVVVETAMLTGYMKFGK 244

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A R+F +M  +++V+WNS+IA Y ++         F TM ++ ++P+ L+L S+   
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            + L+     R +H  + +     +D     +++ MY K G ++SA  +F  +P KDVIS
Sbjct: 305 CSNLSALPLGRQMHQLVSKSP-LSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVIS 363

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN +I+GYAQ+G   +A+ +F  M     + P+  T+V+++ A +H G +  G++    +
Sbjct: 364 WNAMISGYAQHGAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 360 IKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            K    F +       TC++D+ G+ GR+D+A+SL  ++P +  +  +  ++    IH  
Sbjct: 423 KKE---FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKN 479

Query: 415 GDKALNFFRQMLD 427
            D A    R +L+
Sbjct: 480 LDLAEFAARNLLN 492



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 126/243 (51%), Gaps = 20/243 (8%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           V V  ++L  Y +FG   +A ++F  M V++  +WN+MI+GY ++  A + L +   M  
Sbjct: 229 VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIE 288

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             V  +P++++S+L  C+    +  G  +H  + K  L  +     +LI+MY K G +  
Sbjct: 289 SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDS 348

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A ++F +M  +DV+SWN++I+ Y Q      A   F  M+   ++PD +T V++  I+A 
Sbjct: 349 AWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAV--ILA- 405

Query: 243 LNDCRNSRSVHGFI---------MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGL 292
              C ++    GF+         M++ + +E   +    V+D+  + G ++ A ++ + +
Sbjct: 406 ---CNHA----GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458

Query: 293 PVK 295
           P K
Sbjct: 459 PFK 461



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 5/194 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ YV   R  + +  F +  + S +RP+  +   VL  C NL     G+++H  V K 
Sbjct: 266 MIAGYVENCRAEDGLKVF-KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS 324

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D     SL+ MYC+ G  + A KLF +MP +D  SWNAMISGY Q G   +AL + 
Sbjct: 325 PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLF 384

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYAK 176
           D+MR   +  D IT  +++  C  +  +  G+     + K  G+E        +I++  +
Sbjct: 385 DKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGR 444

Query: 177 FGMMRHALRVFDQM 190
            G +  A+ +  +M
Sbjct: 445 AGRLDEAVSLIKEM 458



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 126/306 (41%), Gaps = 56/306 (18%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-NGLASEAIEVFQMM 323
           DV+  N  +  + +   + SA  VFE + V+  ++WNT+++GY +  G   EA E+F  +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 324 EECNEINPN--------------------------QGTYVSILPAYSHVGALRQGIKIHA 357
            E + ++ N                            ++ +++  ++  G +++   + +
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 358 ---------------------------RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
                                       + KN     V V T ++  Y K G+++ A  +
Sbjct: 192 VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERI 251

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F ++   + V WN++I+ +  + + +  L  F+ M++  VRP+ ++  S+L  CS+   +
Sbjct: 252 FQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSAL 311

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             G R  H +  +  +         ++ ++ + G L  A      MP R D   W A++ 
Sbjct: 312 PLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMIS 369

Query: 511 ACRIHG 516
               HG
Sbjct: 370 GYAQHG 375


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 363/632 (57%), Gaps = 64/632 (10%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQ-SGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           AR +F+ M VR + +WN M+SGY + +G   EA ++ D++       +P +V        
Sbjct: 92  ARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP------EPDSV-------- 137

Query: 141 RSDNILSGLLIHLYIVKHGLEF-------NLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
            S NI+    +  Y VK  L F       ++   N LI+ +A+ G M+ A  +F  M E+
Sbjct: 138 -SYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK 196

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           + VSW+++I+ Y +  D   A   +  +                                
Sbjct: 197 NGVSWSAMISGYVEHGDLEAAEELYKNVG------------------------------- 225

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
                    M+ V++  A++  Y K G +  A  +F+ + VK++++WN++I GY +N  A
Sbjct: 226 ---------MKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRA 276

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            + ++VF+ M E + + PN  +  S+L   S++ AL  G ++H  V K+ L  D    T 
Sbjct: 277 EDGLKVFKTMIE-SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTS 335

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY KCG +D A  LF ++PR   + WNA+IS +  HG G KAL+ F +M +  ++PD
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            ITFV+++ AC+H+G V  G +YF  M++EFGI+    HY C++DL GRAG L  A + I
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLI 455

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           + MP  P A+I+G LLGACRIH N++L   A+  L  +D  +   YV ++NIYA   KW+
Sbjct: 456 KEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWD 515

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V +VR + ++  + K PG+S IE+ +    F + +R HP+   I+ +L  L  KMK  G
Sbjct: 516 QVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAG 575

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           YVPD  F L DVEE+ KE +L  HSE+LAIAFG++ + P +PI++FKNLRVCGDCH   K
Sbjct: 576 YVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIK 635

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FIS I +REIIVRD+ RFHHF++G CSCGDYW
Sbjct: 636 FISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 36/373 (9%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSM 127
           +L  Y R      A   F+ MPV+D  SWN +ISG+ Q+G   +A D+   M    GVS 
Sbjct: 142 MLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201

Query: 128 DPITVASILPVCARSDNILSGLLIH--------LYIVKHGLEFNLFVSNNLINMYAKFGM 179
                            ++SG + H        LY  K+    ++ V   ++  Y KFG 
Sbjct: 202 SA---------------MISGYVEHGDLEAAEELY--KNVGMKSVVVETAMLTGYMKFGK 244

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A R+F +M  +++V+WNS+IA Y ++         F TM ++ ++P+ L+L S+   
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            + L+     R +H  + +     +D     +++ MY K G ++SA  +F  +P KDVI+
Sbjct: 305 CSNLSALPLGRQMHQLVSKSP-LSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVIT 363

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN +I+GYAQ+G   +A+ +F  M     + P+  T+V+++ A +H G +  G++    +
Sbjct: 364 WNAMISGYAQHGAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 360 IKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSS-SVPWNAIISCHGIHGQ 414
            K    F +       TC++D+ G+ GR+D+A+SL  ++P +  +  +  ++    IH  
Sbjct: 423 KKE---FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKN 479

Query: 415 GDKALNFFRQMLD 427
            D A    R +L+
Sbjct: 480 LDLAEFAARNLLN 492



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 155/350 (44%), Gaps = 52/350 (14%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQAGI 226
           N  I  + +   +  A  VF++M  R  V+WN++++ Y +    +  AH  F  + +   
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE--- 133

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
            PD ++                                     N ++  Y +   + +A 
Sbjct: 134 -PDSVSY------------------------------------NIMLVCYLRSYGVKAAL 156

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
           A F  +PVKD+ SWNTLI+G+AQNG   +A ++F +M E N +     ++ +++  Y   
Sbjct: 157 AFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGV-----SWSAMISGYVEH 211

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G L    +++    KN     V V T ++  Y K G+++ A  +F ++   + V WN++I
Sbjct: 212 GDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           + +  + + +  L  F+ M++  VRP+ ++  S+L  CS+   +  G R  H +  +  +
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG-RQMHQLVSKSPL 326

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                    ++ ++ + G L  A      MP R D   W A++     HG
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQHG 375



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 125/241 (51%), Gaps = 20/241 (8%)

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           V V  ++L  Y +FG   +A ++F  M V++  +WN+MI+GY ++  A + L +   M  
Sbjct: 229 VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIE 288

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             V  +P++++S+L  C+    +  G  +H  + K  L  +     +LI+MY K G +  
Sbjct: 289 SRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDS 348

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A ++F +M  +DV++WN++I+ Y Q      A   F  M+   ++PD +T V++  I+A 
Sbjct: 349 AWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAV--ILA- 405

Query: 243 LNDCRNSRSVHGFI---------MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGL 292
              C ++    GF+         M++ + +E   +    V+D+  + G ++ A ++ + +
Sbjct: 406 ---CNHA----GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458

Query: 293 P 293
           P
Sbjct: 459 P 459



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 5/194 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ YV   R  + +  F +  + S +RP+  +   VL  C NL     G+++H  V K 
Sbjct: 266 MIAGYVENCRAEDGLKVF-KTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS 324

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D     SL+ MYC+ G  + A KLF +MP +D  +WNAMISGY Q G   +AL + 
Sbjct: 325 PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLF 384

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYAK 176
           D+MR   +  D IT  +++  C  +  +  G+     + K  G+E        +I++  +
Sbjct: 385 DKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGR 444

Query: 177 FGMMRHALRVFDQM 190
            G +  A+ +  +M
Sbjct: 445 AGRLDEAVSLIKEM 458


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/719 (35%), Positives = 393/719 (54%), Gaps = 20/719 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y   G   +A+  F +  +   L+ D +++  VL AC  + D   GK IH   +  
Sbjct: 81  LISGYGGMGFYHKAIGLFSEARMAC-LKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVC 139

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VF+   L+ MYC+    + AR LF+     D+ SWN++I+GY + G   E L +L
Sbjct: 140 GLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLL 199

Query: 118 DEMRLEGVSMDPITVASILPVCARS-DNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +M   G+ ++  T+ S L  C  + +N++S G  +H Y VK GL+ ++ V   L++MYA
Sbjct: 200 VKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYA 259

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-----PITAHGFFTTMQQAGIQPDL 230
           K G +  A+++F     ++VV +N++IA + Q+ D        A   F+ MQ+ GI+P  
Sbjct: 260 KTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSD 319

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  S+  I   +      + +H  I +      D  IG+ ++++Y+ LG        F 
Sbjct: 320 FTFSSIIKICNHIEAFEYGKQIHAHICKHN-IQSDEFIGSTLIELYSLLGSTEDQLKCFN 378

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
             P  D++SW T+I GYAQNG    A+ +F  +    +  P++    ++L A + V A R
Sbjct: 379 STPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGK-KPDEFIITTMLSACADVAAER 437

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G ++H   +K  +     V    + MY K G +D A   F ++     V W+ +I  + 
Sbjct: 438 SGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNA 497

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG    A+N F  M   G+ P+ ITF+ +LTACSH GLV EG RY+  M++++ +K ++
Sbjct: 498 QHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINV 557

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KH  C+VDL  RAG L  A NFI N        +W  LL  CRI+ ++  G   +++L E
Sbjct: 558 KHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIE 617

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +D +    YVL+ NIY + G      ++R L +DRG++K PG S IEV N+V  F  G+ 
Sbjct: 618 LDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDI 677

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILT----SHSERLAIAFG 646
           +HP  + IY +L  +  K + +GY+  K   +Q+V    KE   T     HSE+LA++FG
Sbjct: 678 SHPMSQIIYKKLEGMLEKKRKIGYIDQK---IQNVTISTKEVKGTLGVNHHSEKLAVSFG 734

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+S PP +P+++ KNLRVC DCH   K IS + +REII+RDS RFHHFK+G CSC DYW
Sbjct: 735 IVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSCSCNDYW 793



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 244/482 (50%), Gaps = 11/482 (2%)

Query: 45  VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           + GK  H  ++K  F   +F+  + L++Y ++G    A+KLFD M  R   S+N +ISGY
Sbjct: 26  IHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGY 85

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
              G   +A+ +  E R+  + +D  + A +L  C +  +   G +IH   +  GL   +
Sbjct: 86  GGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQV 145

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           F++N LI+MY K   + HA  +F+   E D VSWNS+I  Y +             M   
Sbjct: 146 FLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHT 205

Query: 225 GIQPDLLTLVS-LTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           G++ +  TL S L S    LN+  +  +++HG+ +++G  + D+++G A++DMYAK G +
Sbjct: 206 GLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDL-DIVVGTALLDMYAKTGYL 264

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQN-----GLASEAIEVFQMMEECNEINPNQGTYV 337
             A  +F   P ++V+ +N +I G+ Q        A EA+++F  M+    I P+  T+ 
Sbjct: 265 GDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQR-QGIKPSDFTFS 323

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           SI+   +H+ A   G +IHA + K+ +  D F+ + L+++Y   G  +D +  F   P+ 
Sbjct: 324 SIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKL 383

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             V W  +I+ +  +GQ + AL  F ++L  G +PD     ++L+AC+       G++  
Sbjct: 384 DIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQ-V 442

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           H    + GI          + ++ ++G+L  A    + +   PD   W  ++ +   HG+
Sbjct: 443 HGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIK-NPDVVSWSVMICSNAQHGH 501

Query: 518 ME 519
            +
Sbjct: 502 AK 503



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 168/327 (51%), Gaps = 9/327 (2%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           +D +    ++   ++S + + G L H +++K      LF+ NN +N+Y+K+G M +A ++
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKL 66

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD+M ER V+S+N +I+ Y        A G F+  + A ++ D  +   + S   Q+ D 
Sbjct: 67  FDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDF 126

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              + +HG  +  G   + V + N ++DMY K   I+ A  +FE     D +SWN+LITG
Sbjct: 127 ALGKVIHGLAIVCG-LGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITG 185

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA-YSHVGAL-RQGIKIHARVIKNCL 364
           YA+ G   E +++   M     +  N  T  S L + Y ++  +   G  +H   +K  L
Sbjct: 186 YARVGAYEEMLKLLVKMHHTG-LRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGL 244

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK-----AL 419
             D+ V T L+DMY K G + DA+ LF   P  + V +NA+I+        DK     AL
Sbjct: 245 DLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEAL 304

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSH 446
             F QM  +G++P   TF S++  C+H
Sbjct: 305 KLFSQMQRQGIKPSDFTFSSIIKICNH 331


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 392/667 (58%), Gaps = 8/667 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           ++L   + +H +V+K GF +  F+   L+  Y + G    ARKLFD++P R   +WN+MI
Sbjct: 15  KSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMI 73

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           S +   G + EA++    M +EGV  D  T ++I    ++   I  G   H   V  GLE
Sbjct: 74  SSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLE 133

Query: 162 -FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             + FV++ L++MYAKF  MR A  VF +++E+DVV + ++I  Y Q      A   F  
Sbjct: 134 VLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFED 193

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAKL 279
           M   G++P+  TL  +      L D  N + +HG +++ G  +E V+    +++ MY++ 
Sbjct: 194 MVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSG--LESVVASQTSLLTMYSRC 251

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
            +I  +  VF  L   + ++W + + G  QNG    A+ +F+ M  C+ I+PN  T  SI
Sbjct: 252 NMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCS-ISPNPFTLSSI 310

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S +  L  G +IHA  +K  L  + +    L+++YGKCG +D A S+F  +     
Sbjct: 311 LQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDV 370

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V  N++I  +  +G G +AL  F ++ + G+ P+ +TF+S+L AC+++GLV EG + F  
Sbjct: 371 VAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFAS 430

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           ++    I+  + H+ CM+DL GR+  L  A   I+ +   PD  +W  LL +C+IHG +E
Sbjct: 431 IRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVE 489

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +      ++ E+   + G ++L++N+YA+ GKW  V E++S  RD  LKK+P  S ++V+
Sbjct: 490 MAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVD 549

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
            +V  F  G+ +HP+  +I++ L  L  K+K+LGY P+  FVLQD++E++K   L  HSE
Sbjct: 550 REVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSE 609

Query: 640 RLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           +LAIA+ +  +  + + I+IFKNLRVCGDCH+W KF+S +T R+II RDS RFHHFK G+
Sbjct: 610 KLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGL 669

Query: 699 CSCGDYW 705
           CSC DYW
Sbjct: 670 CSCKDYW 676



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 228/434 (52%), Gaps = 12/434 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS ++  G+  EAV+ FY   L  G+ PD YTF  + KA   L     G++ H   + L
Sbjct: 72  MISSHISHGKSKEAVE-FYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVL 130

Query: 58  GFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G E  D FVA++L+ MY +F     A  +F  +  +D   + A+I GY Q G   EAL I
Sbjct: 131 GLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKI 190

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++M   GV  +  T+A IL  C    ++++G LIH  +VK GLE  +    +L+ MY++
Sbjct: 191 FEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSR 250

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             M+  +++VF+Q+   + V+W S +    Q+     A   F  M +  I P+  TL S+
Sbjct: 251 CNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSI 310

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               + L        +H   M+ G    +   G A++++Y K G ++ A +VF+ L   D
Sbjct: 311 LQACSSLAMLEVGEQIHAITMKLG-LDGNKYAGAALINLYGKCGNMDKARSVFDVLTELD 369

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V++ N++I  YAQNG   EA+E+F+ ++    + PN  T++SIL A ++ G + +G +I 
Sbjct: 370 VVAINSMIYAYAQNGFGHEALELFERLKNMGLV-PNGVTFISILLACNNAGLVEEGCQIF 428

Query: 357 ARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           A +  N    L  D F  TC++D+ G+  R+++A  L  +V     V W  +++   IHG
Sbjct: 429 ASIRNNHNIELTIDHF--TCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHG 486

Query: 414 QGDKALNFFRQMLD 427
           + + A     ++L+
Sbjct: 487 EVEMAEKVMSKILE 500


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/626 (38%), Positives = 346/626 (55%), Gaps = 84/626 (13%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           EWDV    +L+  Y ++G  + AR+LFD MP RD  SWN M+SGY + G+ VEA  + D 
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 249

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
                    P+                                ++F    +++ YA+ GM
Sbjct: 250 A--------PVR-------------------------------DVFTWTAVVSGYAQNGM 270

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVFD M ER+ VSWN+++AAY Q      A   F  M                  
Sbjct: 271 LEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP----------------- 313

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                 CRN  S         W        N ++  YA+ G++  A AVF+ +P KD +S
Sbjct: 314 ------CRNVAS---------W--------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  ++  Y+Q G + E +++F  M  C E   N+  +  +L   + + AL  G+++H R+
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALECGMQLHGRL 409

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           I+       FV   L+ MY KCG ++DA + F ++     V WN +I+ +  HG G +AL
Sbjct: 410 IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEAL 469

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  M     +PD IT V +L ACSHSGLV +G  YF+ M  +FG+    +HY CM+DL
Sbjct: 470 EIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDL 529

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  AH+ +++MP  PD+++WGALLGA RIH N ELG  A++++FE++ EN G Y
Sbjct: 530 LGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMY 589

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA+ GKW    ++R +  +RG+KK PG+S IEV NKV  F  G+  HP+ EKIY
Sbjct: 590 VLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIY 649

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L +L  +MK  GYV     VL DVEE+EKEH+L  HSE+LA+A+GI++ PP  PI++ 
Sbjct: 650 AFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVI 709

Query: 660 KNLRVCGDCHN----WTKFISQITER 681
           KNLRVCGDCHN    W + + +++ R
Sbjct: 710 KNLRVCGDCHNAFKAWIELMLKVSGR 735



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 215/476 (45%), Gaps = 64/476 (13%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E +V  +   +  + R G    A +LF  MP R + ++NAM++GY  +G          
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANG---------- 83

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLF---------VS 167
             RL      P+  AS+     R DN     L+H   V   L     LF           
Sbjct: 84  --RL------PLA-ASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTY 134

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N +I+ +A  G++  A   FD   E+D VSWN ++AAY ++     A G F +  +    
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--- 191

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D+++  +L S   Q      +R +   +  R     DV+  N +V  YA+ G +  A  
Sbjct: 192 -DVISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARR 245

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+  PV+DV +W  +++GYAQNG+  EA  VF  M E N ++ N     +++ AY    
Sbjct: 246 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWN-----AMVAAY---- 296

Query: 348 ALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            +++ +   A+ + N + C +V     ++  Y + G +++A ++F  +P+  +V W A++
Sbjct: 297 -IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 355

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFG 465
           + +   G  ++ L  F +M   G   +   F  +L+ C+    +  G Q +  +++  +G
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 466 IKPHLKHYGCMVD-----LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +       GC V      ++ + G++  A N  + M  R D   W  ++     HG
Sbjct: 416 V-------GCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ Y + G   E +  F +     G   +   F  VL  C ++     G ++H  +++ 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMG-RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA 412

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+    FV  +LL MY + G    AR  F++M  RD  SWN MI+GY + G   EAL+I 
Sbjct: 413 GYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIF 472

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
           D MR      D IT+  +L  C+ S  +  G + + Y + H  G+         +I++  
Sbjct: 473 DMMRTTSTKPDDITLVGVLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLG 531

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL- 233
           + G +  A  +   M  E D   W +++ A     +P         + +  ++P+   + 
Sbjct: 532 RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPENAGMY 589

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           V L++I A     R++R +   +  RG
Sbjct: 590 VLLSNIYASSGKWRDARKMRVMMEERG 616



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 67/378 (17%)

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           LE  +  SN  I  + + G +  A R+F  M  R   ++N+++A Y  +     A   F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 220 TMQQAGIQPDLL---TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            + +    PD     TL+   ++ + L D R                             
Sbjct: 94  AIPR----PDNYSYNTLLHALAVSSSLADAR----------------------------- 120

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
                      +F+ +PV+D +++N +I+ +A +GL S A   F +  E + ++ N    
Sbjct: 121 ----------GLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWN---- 166

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
             +L AY     +R G    AR + N    +DV     L+  Y + G++ +A  LF ++P
Sbjct: 167 -GMLAAY-----VRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               V WN ++S +   G   +A    R++ D     D  T+ ++++  + +G++ E +R
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
            F  M E   +      +  MV  + +   +  A      MP R  AS W  +L      
Sbjct: 277 VFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQA 330

Query: 516 GNMELGAVASDRLFEVDS 533
           G +E      D + + D+
Sbjct: 331 GMLEEAKAVFDTMPQKDA 348


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/608 (37%), Positives = 373/608 (61%), Gaps = 17/608 (2%)

Query: 105 CQSGNAVEAL---DILD-EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           C SG   EAL    IL  E++ EG         +IL  C     I  G  +H +++K   
Sbjct: 69  CSSGQLKEALLQMAILGREVKFEGYD-------TILNECVSQRAIREGQRVHTHMIKTCY 121

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             ++++   LI +Y K   +  A  +FD+M +++VVSW ++I+AY Q      A   F  
Sbjct: 122 LPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVE 181

Query: 221 MQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           M ++  +P+  T  + LTS    L      R +H   ++R  +   + +G++++DMYAK 
Sbjct: 182 MLRSDTEPNHFTFATILTSCYGSLG-FETGRQIHSIAIKRN-YESHMFVGSSLLDMYAKS 239

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I  A  VF  LP +DV++   +I+GYAQ GL  EA+++F+ ++    +N N  TY S+
Sbjct: 240 GRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQ-IEGMNSNSVTYASV 298

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A S + AL  G ++H+ V+++     V +   L+DMY KCG +  A  +F  +P  + 
Sbjct: 299 LTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTC 358

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEG-QRYF 457
           + WNA++  +  HG   + L  F+ M +E  V+PD IT++++L+ CSH  L   G + ++
Sbjct: 359 ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFY 418

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           +M+  + GI+P + HYGC+VDL GRAG +  A +FI+ MP  P A+IWG+LLG+CR+H +
Sbjct: 419 NMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSD 478

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           +E+G +   +L E++ EN G YV++SN+YA+ GKWE +  +R L +++ + K PG S +E
Sbjct: 479 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 538

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
           ++  V  F+  + THP+ E++  +++ L+ K K  GYVPD S VL DV+E++KE +L  H
Sbjct: 539 LDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGH 598

Query: 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           SE+LA+AFG+I++P  + I++ KNLR+C DCH++ KF+S++  R +I+RD NRFH+   G
Sbjct: 599 SEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGG 658

Query: 698 ICSCGDYW 705
           +CSCGDYW
Sbjct: 659 VCSCGDYW 666



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 248/462 (53%), Gaps = 14/462 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G+L EA+    Q  +  G    F  +  +L  C   R + +G+++H  ++K  +   V++
Sbjct: 72  GQLKEAL---LQMAIL-GREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYL 127

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L+ +Y +      AR++FD+MP ++  SW AMIS Y Q G A EAL++  EM     
Sbjct: 128 RTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDT 187

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +  T A+IL  C  S    +G  IH   +K   E ++FV ++L++MYAK G +  A  
Sbjct: 188 EPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHG 247

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF  + ERDVV+  +II+ Y Q      A   F  +Q  G+  + +T  S+ + ++ L  
Sbjct: 248 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAA 307

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             + + VH  ++R G +   V++ N+++DMY+K G +  A  +F+ +P +  ISWN ++ 
Sbjct: 308 LNHGKQVHSHVLRSGQY-SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLV 366

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI--KNC 363
           GY+++G+A E +E+F++M E N++ P+  TY+++L   SH      G++I   ++  K+ 
Sbjct: 367 GYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDG 426

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFF 422
           +  D+    C+VD+ G+ GR+++A     ++P   ++  W +++    +H   +  +   
Sbjct: 427 IEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVG 486

Query: 423 RQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +++L+  + P++   +V L    + +G   + +    +MQE+
Sbjct: 487 QKLLE--LEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 526


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/591 (38%), Positives = 358/591 (60%), Gaps = 37/591 (6%)

Query: 150 LIHLYIVKHGLEFNLFVSNNLI----NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           +IH Y+++  +  ++F ++ LI    +  +   ++ +A R+F Q+   ++  +N++I  +
Sbjct: 35  IIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGH 94

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             S +P  A  F+   Q+ G+ PD LT   L     +L+        HG I++ G F +D
Sbjct: 95  SGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHG-FEKD 153

Query: 266 VIIGNAVVDMYA-------------------------------KLGIINSACAVFEGLPV 294
           V + N++V MYA                               K G + SA  +F+ +P 
Sbjct: 154 VYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPE 213

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K++++W+T+I+GYAQN    +A+E+F++++    +  N+   VS++ + +H+GAL  G +
Sbjct: 214 KNLVTWSTMISGYAQNNHFDKAVELFKVLQS-QGVRANETVMVSVISSCAHLGALELGER 272

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
            H  V+KN +  ++ + T LVDMY +CG ID A+ +F  +P   ++ W A+I+   +HG 
Sbjct: 273 AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGY 332

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
            +++L +F  M++ G+ P  ITF ++L+ACSH GLV  G + F  M+ +  ++P L+HYG
Sbjct: 333 SERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYG 392

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAG L  A  F+  MPV+P+A +WGALLGACRIH N E+G      L ++  +
Sbjct: 393 CMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQ 452

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + GYYVL+SNIYAN  +WE V E+R + + +GLKK PG S IE++ +V  F  G+ +HP+
Sbjct: 453 HSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPE 512

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            +KI      +  ++++ GY  + +  L D++E+EKE  L  HSE+LAIAFG++ S   +
Sbjct: 513 MDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGT 572

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI+I KNLRVC DCH  TK IS++  RE+IVRD NRFHHF+ G+CSC DYW
Sbjct: 573 PIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 145/543 (26%), Positives = 250/543 (46%), Gaps = 64/543 (11%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC-----RFGLANVARKLFDDMPVR 92
           L+ C +L   K IH  +++     DVF AAS L  +C        L + A ++F  +   
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVF-AASRLIAFCVDPSSGTSLIDYASRIFSQIQNP 82

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           +   +NAMI G+  S N  +A     + + +G+  D +T   ++  C +   I  G   H
Sbjct: 83  NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAH 142

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFG----------------------MMR--------- 181
            +I+KHG E +++V N+L++MYA FG                      M+R         
Sbjct: 143 GHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVE 202

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A ++FDQM E+++V+W+++I+ Y Q+N    A   F  +Q  G++ +   +VS+ S  A
Sbjct: 203 SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCA 262

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L         H ++++ G  + ++I+G A+VDMYA+ G I+ A  VFE LP +D +SW 
Sbjct: 263 HLGALELGERAHDYVVKNGMTL-NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWT 321

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            LI G A +G +  +++ F  M E   + P   T+ ++L A SH G + +G +I   + +
Sbjct: 322 ALIAGLAMHGYSERSLKYFATMVEAG-LTPRDITFTAVLSACSHGGLVERGFQIFESMKR 380

Query: 362 NCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQ---GD 416
           +           C+VD+ G+ G++++A     ++P   + P W A++    IH     G+
Sbjct: 381 DHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGE 440

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +      Q+L     P H  +  LL+    +    E       M +  G+K    H   +
Sbjct: 441 RVGKILIQLL-----PQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGH--SL 493

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           ++L GR       H F       P+      +W  +L   R  G        +D LF++D
Sbjct: 494 IELDGR------VHKFTIGDSSHPEMDKIERMWEEILMRIRAAG---YRGNTADALFDID 544

Query: 533 SEN 535
            E 
Sbjct: 545 EEE 547



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 57/333 (17%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FY  +   GL PD  TFP ++K+C  L     G + H  ++K GFE DV+V  SL+HMY 
Sbjct: 106 FYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYA 165

Query: 75  RFGLANVA-------------------------------RKLFDDMPVRDSGSWNAMISG 103
            FG    A                               RKLFD MP ++  +W+ MISG
Sbjct: 166 TFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISG 225

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y Q+ +  +A+++   ++ +GV  +   + S++  CA    +  G   H Y+VK+G+  N
Sbjct: 226 YAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLN 285

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L +   L++MYA+ G +  A+ VF+ + ERD +SW ++IA          +  +F TM +
Sbjct: 286 LILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVE 345

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AV 272
           AG+ P  +T  ++ S  +           HG ++ RG+ + + +  +            +
Sbjct: 346 AGLTPRDITFTAVLSACS-----------HGGLVERGFQIFESMKRDHRVEPRLEHYGCM 394

Query: 273 VDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
           VD+  + G +  A      +PVK +   W  L+
Sbjct: 395 VDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL 427


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 351/581 (60%), Gaps = 7/581 (1%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF--GMMRHAL 184
           +D  ++ + +  C R  ++ +   I  ++V+  L  + F+++ LI   A    G + +A 
Sbjct: 5   LDQGSLVAAIKRCTRVGDLKA---IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAH 61

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           R+F      ++  WN+II  Y  S+ PITA   +  M   GI P+  T   +     +L 
Sbjct: 62  RIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLL 121

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + +H  I++ G   E  ++ N ++ +YA  G ++ AC +F+ +P  D  SW+T++
Sbjct: 122 RLCEGQELHSQIVKVGLDFETPLV-NGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           +GYAQNG A EA+++F+ M+  N ++ +  T  S++     +GAL  G  +H+ + K  +
Sbjct: 181 SGYAQNGQAVEALKLFREMQAEN-VSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV 239

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             DV + T LV MY KCG +D+A+ +F  +       W+ +I+ + IHG G+KAL  F  
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M      P+ +TF S+L+ACSHSGLV +G + F  M  E+ I P +KHYGCMVDLF RAG
Sbjct: 300 MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAG 359

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            +G AH FIQ MP+ P+  +W  LLGAC+ HG  +LG   S ++ ++D  +   YVL+SN
Sbjct: 360 MVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSN 419

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           +YA++G+W  V +VRSL +D+  KK  GWSSIE+N  V  F  G+ +HP+ EKIY  L  
Sbjct: 420 VYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQ 479

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
           +  K+K +G+V     VL D++E+EKE+ L  HSERLAIA+G++ +P  SPI+I KNLRV
Sbjct: 480 MARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRV 539

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           C DCH   K IS++  REIIVRD  RFHHF++  CSC DYW
Sbjct: 540 CRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 202/407 (49%), Gaps = 7/407 (1%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH--MYCRFGLANVARKLFDDMPVRDSG 95
           +K C  + D K I   +++     D F+ + L+        G    A ++F      +  
Sbjct: 14  IKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLF 73

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
            WN +I GY  S + + A+ +  +M L G+S +  T   +L  C +   +  G  +H  I
Sbjct: 74  MWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQI 133

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           VK GL+F   + N LI +YA  G M +A  +FD+M E D  SW+++++ Y Q+   + A 
Sbjct: 134 VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEAL 193

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  MQ   +  D  TL S+  +   L      + VH ++ + G  + DV++G A+V M
Sbjct: 194 KLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKI-DVVLGTALVGM 252

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y+K G +++A  VF+G+  +DV +W+T+I GYA +G   +A+++F  M+    I PN  T
Sbjct: 253 YSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTI-PNCVT 311

Query: 336 YVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           + S+L A SH G + +G +I   +  +  +   +    C+VD++ + G +  A      +
Sbjct: 312 FTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371

Query: 395 P-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVS 439
           P   + V W  ++     HG  D   +  R++L  +   P++   VS
Sbjct: 372 PIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVS 418



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 173/334 (51%), Gaps = 6/334 (1%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y+     G+ P+ YTF  VLKAC  L+   +G+++H  ++K+G +++  +   L+ +Y 
Sbjct: 94  LYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYA 153

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  + A  +FD+MP  DS SW+ M+SGY Q+G AVEAL +  EM+ E VS D  T+AS
Sbjct: 154 ACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLAS 213

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++ VC     +  G  +H Y+ K G++ ++ +   L+ MY+K G + +AL+VF  M ERD
Sbjct: 214 VVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERD 273

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           V +W+++IA Y        A   F  M+++   P+ +T  S+ S  +          +  
Sbjct: 274 VTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFE 333

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLA 313
            +         +     +VD++ + G++  A    + +P++ +V+ W TL+     +G  
Sbjct: 334 TMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYK 393

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
                + + + + +  +P    YV +   Y+ +G
Sbjct: 394 DLGEHISRKILKLDPSSPEN--YVLVSNVYASLG 425


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 368/617 (59%), Gaps = 13/617 (2%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           + SWNA +    +  +  EAL++  +M   G S +  T       CA     L+G  +H 
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD--VVSWNSIIAAYEQSNDP 211
           +++K G E   FV  +LI+MY K   +  A +VFD+        V +N++IA Y  ++  
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F  M++ G+  + +T++ L  + A         S+H   +R G    D+ +GN 
Sbjct: 141 SDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFG-LDGDLSVGNC 199

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           ++ MY + G ++ A  +F+G+P K +I+WN +I+GYAQNGLA   +++++ ME    I P
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG-IVP 258

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T V +L + +H+GA   G ++  R+  +   F+ F+   L++MY +CG +  A ++F
Sbjct: 259 DPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIF 318

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +   + + W AII+ +G+HGQG+ A+  F +M+     PD   FVS+L+ACSH+GL  
Sbjct: 319 DGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G  YF  M+ ++G++P  +HY C+VDL GRAG L  A   I +M V PD ++WGALLGA
Sbjct: 379 KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGA 438

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+EL  +A +++ E +  N+GYYVL+SNI++  G  EG+  VR + R+R LKK P
Sbjct: 439 CKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEP 498

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S +E   ++ +F  G+RTHP+ ++IY  L  L   +K  G   D        +E   E
Sbjct: 499 GCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND------QESRNE 552

Query: 632 HILTS---HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
            ++T    HSE+LAIAFG+I++ P + I + KNLRVCGDCH + K +S+I +R+++VRD+
Sbjct: 553 ELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDA 612

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHFK+G+CSC DYW
Sbjct: 613 TRFHHFKNGVCSCKDYW 629



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 254/487 (52%), Gaps = 17/487 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAA 67
             EA++ + Q  L SG  P+ +TFP   K+C +L   + G ++H  V+K G E + FV  
Sbjct: 37  FQEALNLYCQM-LASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQT 95

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGV 125
           SL+ MYC+      ARK+FD+     + +  +NA+I+GY  +    +A+ +  +MR EGV
Sbjct: 96  SLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGV 155

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           S++ +T+  ++PVCA   ++  G  +H   V+ GL+ +L V N L+ MY + G +  A +
Sbjct: 156 SVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARK 215

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD M E+ +++WN++I+ Y Q+         +  M+  GI PD +TLV + S  A L  
Sbjct: 216 LFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGA 275

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R V   I   G F  +  + NA+++MYA+ G +  A A+F+G+  K+VISW  +I 
Sbjct: 276 HAAGREVEQRIELSG-FGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIA 334

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CL 364
           GY  +G    A+++F  M   +E+ P+   +VS+L A SH G   +G+     + ++  L
Sbjct: 335 GYGMHGQGELAVQLFDEMISSDEL-PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGL 393

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFR 423
                  +C+VD+ G+ GR+++A  L   +        W A++    IH   + A   F 
Sbjct: 394 QPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFE 453

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR 482
           ++++    P +I +  LL+         EG     +M  E  +K   K  GC  V+  GR
Sbjct: 454 KVIE--FEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLK---KEPGCSYVEYQGR 508

Query: 483 AGHLGMA 489
             HL +A
Sbjct: 509 I-HLFLA 514



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 168/362 (46%), Gaps = 13/362 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y    R S+AV  F Q     G+  +  T   ++  C   +    G  +H   ++ 
Sbjct: 130 LIAGYSLNSRFSDAVLLFRQMR-KEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRF 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D+ V   LL MY R G  + ARKLFD MP +   +WNAMISGY Q+G A   LD+ 
Sbjct: 189 GLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLY 248

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G+  DP+T+  +L  CA      +G  +   I   G  FN F+ N LINMYA+ 
Sbjct: 249 RKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARC 308

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD M E++V+SW +IIA Y        A   F  M  +   PD    VS+ 
Sbjct: 309 GNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVL 368

Query: 238 SIVAQLNDCRNSRSVHGFI-MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK 295
           S  +        + ++ F  M R + ++      + VVD+  + G +  A  +   + V+
Sbjct: 369 SACSHAG--LTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVE 426

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGI 353
            D   W  L+ G  +     E  E+    E+  E  P N G YV +   +S  G +   +
Sbjct: 427 PDGAVWGALL-GACKIHRNVELAEL--AFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGIL 483

Query: 354 KI 355
           ++
Sbjct: 484 RV 485


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/696 (34%), Positives = 389/696 (55%), Gaps = 40/696 (5%)

Query: 48   KKIHCSVLKLGFEWDVFVAA-SLLHMYCRFG-LANVARKLFDDMPVRDSGSWNAMISGYC 105
            K +H  ++KL  +W+   AA +L+  Y  FG   + A   +  +P R+   WN+ +  + 
Sbjct: 440  KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFK 498

Query: 106  QSGNAVE-ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
             S  ++   L++  E+  +GV  D    +  L  C R  +I  G+ IH  ++K G + ++
Sbjct: 499  SSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV 558

Query: 165  FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            ++   L+N Y +   +  A +VF +M   + + WN  I    QS         F  MQ +
Sbjct: 559  YLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS 618

Query: 225  GIQPDLLTLVS-LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             ++ +  T+V  L + +++L      +  HG+++R G F  DV +G +++DMY K   + 
Sbjct: 619  FLKAETATIVRVLQASISELGFLNMGKETHGYVLRNG-FDCDVYVGTSLIDMYVKNHSLT 677

Query: 284  SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE------------------ 325
            SA AVF+ +  +++ +WN+L++GY+  G+  +A+ +   ME+                  
Sbjct: 678  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 737

Query: 326  ---CNE-------------INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
               C +             + PN  +   +L A + +  L++G +IH   I+N    DVF
Sbjct: 738  MWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 797

Query: 370  VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            VAT L+DMY K   + +A  +F ++   +   WN +I    I G G +A++ F +M   G
Sbjct: 798  VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 857

Query: 430  VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
            V PD ITF +LL+AC +SGL+ EG +YF  M  ++ I P L+HY CMVDL GRAG+L  A
Sbjct: 858  VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 917

Query: 490  HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             + I  MP++PDA+IWGALLG+CRIH N++    A+  LF+++  N   Y+LM N+Y+  
Sbjct: 918  WDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIF 977

Query: 550  GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
             +WE +D +R L    G++    WS I++N +V +F +  + HP   KIY EL  L ++M
Sbjct: 978  NRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 1037

Query: 610  KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
            K LGYVPD + V Q+++E EK+ IL SH+E+LAI +G+I      PI++ KN R+C DCH
Sbjct: 1038 KKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCH 1097

Query: 670  NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +  K+IS +  RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1098 SAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 203/424 (47%), Gaps = 43/424 (10%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D   +   LK C  ++D   G +IH  ++K GF+ DV++  +L++ Y R      A ++F
Sbjct: 522 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 581

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
            +MP  ++  WN  I    QS    + +++  +M+   +  +  T+  +L         L
Sbjct: 582 HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFL 641

Query: 147 S-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           + G   H Y++++G + +++V  +LI+MY K   +  A  VFD M  R++ +WNS+++ Y
Sbjct: 642 NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGY 701

Query: 206 EQSN-------------------DPITAHG----------------FFTTMQQAGIQPDL 230
                                  D +T +G                FF  MQQ G+ P+ 
Sbjct: 702 SFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNS 761

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            ++  L    A L+  +  + +H   +R G F+EDV +  A++DMY+K   + +A  VF 
Sbjct: 762 ASITCLLRACASLSLLQKGKEIHCLSIRNG-FIEDVFVATALIDMYSKSSSLKNAHKVFR 820

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  K + SWN +I G+A  GL  EAI VF  M++   + P+  T+ ++L A  + G + 
Sbjct: 821 RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG-VGPDAITFTALLSACKNSGLIG 879

Query: 351 QGIKIHARVIKNCLCFDVFV-ATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISC 408
           +G K    +I +           C+VD+ G+ G +D+A  L + +P +  +  W A++  
Sbjct: 880 EGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 939

Query: 409 HGIH 412
             IH
Sbjct: 940 CRIH 943



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 162/354 (45%), Gaps = 63/354 (17%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN----LVDGKKIHCSVLKL 57
           I + ++  +L + V+ F +    S L+ +  T   VL+A  +    L  GK+ H  VL+ 
Sbjct: 596 IILNLQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQASISELGFLNMGKETHGYVLRN 654

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V  SL+ MY +      A+ +FD+M  R+  +WN+++SGY   G   +AL +L
Sbjct: 655 GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 714

Query: 118 DEMRLEGVSMDPIT-----------------------------------VASILPVCARS 142
           ++M  EG+  D +T                                   +  +L  CA  
Sbjct: 715 NQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASL 774

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH   +++G   ++FV+  LI+MY+K   +++A +VF ++  + + SWN +I
Sbjct: 775 SLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 834

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             +        A   F  MQ+ G+ PD +T  +L      L+ C+NS    G I   GW 
Sbjct: 835 MGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL------LSACKNS----GLI-GEGWK 883

Query: 263 MEDVIIGN-----------AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
             D +I +            +VD+  + G ++ A  +   +P+K D   W  L+
Sbjct: 884 YFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 937



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MIS Y   G   EA+  F Q     G+ P+  +   +L+AC +L     GK+IHC  ++ 
Sbjct: 732 MISGYAMWGCGKEALAFFAQMQ-QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRN 790

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DVFVA +L+ MY +      A K+F  +  +   SWN MI G+   G   EA+ + 
Sbjct: 791 GFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVF 850

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG 148
           +EM+  GV  D IT  ++L  C  S  I  G
Sbjct: 851 NEMQKVGVGPDAITFTALLSACKNSGLIGEG 881


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 377/613 (61%), Gaps = 7/613 (1%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
           V  G  ++A+  FY   L  G+ PD YT+P VLKAC +L     G+ +H   +    + +
Sbjct: 109 VAVGHFTKAIH-FYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVH-ETMHGKTKAN 166

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
           V+V  +++ M+ + G    AR++F++MP RD  SW A+I G   +G  +EAL +  +MR 
Sbjct: 167 VYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRS 226

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
           EG+  D + VASILP C R + +  G+ + +  V+ G E +L+VSN +I+MY K G    
Sbjct: 227 EGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLE 286

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A RVF  M+  DVVSW+++IA Y Q+     ++  +  M   G+  + +   S+   + +
Sbjct: 287 AHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGK 346

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L   +  + +H F+++ G  M DV++G+A++ MYA  G I  A ++FE    KD++ WN+
Sbjct: 347 LELLKQGKEMHNFVLKEG-LMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNS 405

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I GY   G    A   F+ +    E  PN  T VSILP  + +GALRQG +IH  V K+
Sbjct: 406 MIVGYNLVGDFESAFFTFRRIWGA-EHRPNFITVVSILPICTQMGALRQGKEIHGYVTKS 464

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L  +V V   L+DMY KCG ++    +F Q+   +   +N +IS  G HGQG+K L F+
Sbjct: 465 GLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFY 524

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            QM +EG RP+ +TF+SLL+ACSH+GL+  G   ++ M  ++GI+P+++HY CMVDL GR
Sbjct: 525 EQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGR 584

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
           AG L  A+ FI  MP+ PDA+++G+LLGACR+H  +EL  + ++R+ ++ +++ G+YVL+
Sbjct: 585 AGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLL 644

Query: 543 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 602
           SN+YA+  +WE + +VRS+ +D+GL+K PG S I+V + + +F+  +  HP + KI + L
Sbjct: 645 SNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETL 704

Query: 603 RNLTAKMKSLGYV 615
            +L   MKS  Y+
Sbjct: 705 NSLLLVMKSEDYM 717



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 256/527 (48%), Gaps = 14/527 (2%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPV--LKACRNLVDGKKIHCSVLKLGF-----EWDVF 64
           + A+     FT      P  +T      LK+  NL + + +H  +L LGF          
Sbjct: 9   AHAIAMLITFTRQQHSLPIHFTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSS 68

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
            A+ L+++Y  FG    A   F  +P +   +WNA++ G    G+  +A+     M   G
Sbjct: 69  FASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHG 128

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHA 183
           V+ D  T   +L  C+    +  G  +H  +  HG  + N++V   +I+M+AK G +  A
Sbjct: 129 VTPDNYTYPLVLKACSSLHALQLGRWVHETM--HGKTKANVYVQCAVIDMFAKCGSVEDA 186

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            R+F++M +RD+ SW ++I     + + + A   F  M+  G+ PD + + S+     +L
Sbjct: 187 RRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRL 246

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
              +   ++    +R G F  D+ + NAV+DMY K G    A  VF  +   DV+SW+TL
Sbjct: 247 EAVKLGMALQVCAVRSG-FESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTL 305

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GY+QN L  E+ +++  M     +  N     S+LPA   +  L+QG ++H  V+K  
Sbjct: 306 IAGYSQNCLYQESYKLYIGMINVG-LATNAIVATSVLPALGKLELLKQGKEMHNFVLKEG 364

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DV V + L+ MY  CG I +A S+F        + WN++I  + + G  + A   FR
Sbjct: 365 LMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFR 424

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           ++     RP+ IT VS+L  C+  G + +G+   H    + G+  ++     ++D++ + 
Sbjct: 425 RIWGAEHRPNFITVVSILPICTQMGALRQGKE-IHGYVTKSGLGLNVSVGNSLIDMYSKC 483

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           G L +     + M VR + + +  ++ AC  HG  E G    +++ E
Sbjct: 484 GFLELGEKVFKQMMVR-NVTTYNTMISACGSHGQGEKGLAFYEQMKE 529


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 353/602 (58%), Gaps = 7/602 (1%)

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           +C   +   A+ +LD M   GV  D IT + ++  C     +  G  +H +I  +G    
Sbjct: 260 HCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPK 319

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
            F++N LINMY KF ++  A  +FD+M ER+VVSW ++I+AY  +     A      M +
Sbjct: 320 TFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFR 379

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G+ P++ T  S+     +L D +    +H +IM+ G    DV + +A++D+Y+K+G + 
Sbjct: 380 DGVMPNMFTFSSVLRACERLYDLKQ---LHSWIMKVG-LESDVFVRSALIDVYSKMGELL 435

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  VF  +   D + WN++I  +AQ+    EA+ +++ M        +Q T  S+L A 
Sbjct: 436 EALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVG-FPADQSTLTSVLRAC 494

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + +  L  G + H  V+K     D+ +   L+DMY KCG ++DA  +F ++ +   + W+
Sbjct: 495 TSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWS 552

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
            +I+    +G   +ALN F  M  +G +P+HIT + +L ACSH+GLV+EG  YF  M   
Sbjct: 553 TMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNL 612

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +GI P  +HYGCM+DL GRA  L      I  M   PD   W  LL ACR   N++L   
Sbjct: 613 YGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATY 672

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
           A+  + ++D ++ G YVL+SNIYA   +W  V EVR   + RG++K PG S IEVN ++ 
Sbjct: 673 AAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIH 732

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
            F  G+++HP+ ++I  +L     ++   GYVPD +FVLQD+E +++E  L  HSE+LAI
Sbjct: 733 AFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAI 792

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
            FGI+S P +  I+I+KNL++CGDCH + K I+++ +R I++RD  R+HHF+DG+CSCGD
Sbjct: 793 VFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGD 852

Query: 704 YW 705
           YW
Sbjct: 853 YW 854



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 208/387 (53%), Gaps = 14/387 (3%)

Query: 26  GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+  D  T+  ++K C     + +GK++H  +   G+    F+   L++MY +F L   A
Sbjct: 280 GVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEA 339

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           + LFD MP R+  SW  MIS Y  +     A+ +L  M  +GV  +  T +S+L  C R 
Sbjct: 340 QVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERL 399

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++     +H +I+K GLE ++FV + LI++Y+K G +  AL+VF +MM  D V WNSII
Sbjct: 400 YDLKQ---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSII 456

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           AA+ Q +D   A   + +M++ G   D  TL S+      L+     R  H  +++   F
Sbjct: 457 AAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK---F 513

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            +D+I+ NA++DMY K G +  A  +F  +  KDVISW+T+I G AQNG + EA+ +F+ 
Sbjct: 514 DQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFES 573

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGK 380
           M +     PN  T + +L A SH G + +G   + R + N    D       C++D+ G+
Sbjct: 574 M-KVQGPKPNHITILGVLFACSHAGLVNEGW-YYFRSMNNLYGIDPGREHYGCMLDLLGR 631

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAII 406
             ++DD + L +++      V W  ++
Sbjct: 632 AEKLDDMVKLIHEMNCEPDVVTWRTLL 658



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y    +L++       F    G+ P+ +TF  VL+AC  L D K++H  ++K+G E
Sbjct: 357 MISAYSN-AQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLE 415

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFV ++L+ +Y + G    A K+F +M   DS  WN++I+ + Q  +  EAL +   M
Sbjct: 416 SDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM 475

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R  G   D  T+ S+L  C     +  G   H++++K   + +L ++N L++MY K G +
Sbjct: 476 RRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSL 533

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +F++M ++DV+SW+++IA   Q+   + A   F +M+  G +P+ +T      I+
Sbjct: 534 EDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHIT------IL 587

Query: 241 AQLNDCRNSRSVHGFIMRRGWF 262
             L  C      H  ++  GW+
Sbjct: 588 GVLFACS-----HAGLVNEGWY 604


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 366/564 (64%), Gaps = 8/564 (1%)

Query: 148 GLLIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           G  +HL  ++ GL   + + ++ L++MY        A R FD++   + V   ++ +   
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 207 QSNDPITAHGFFTTMQQAGIQP--DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           ++N   T    F +M  +G     D    +   S  A++ D   +  +H  + + G    
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIG-LDG 225

Query: 265 DVIIGNAVVDMYAKLG--IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-Q 321
              + N ++D YAK G   + +A  +F+ +  +DV+SWNT+I  YAQNGL++EA+ ++ +
Sbjct: 226 QTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSK 284

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
           M+    ++  N  T  ++L A +H GA++ G +IH +V++  L  +V+V T +VDMY KC
Sbjct: 285 MLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKC 344

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G+++ A   F ++   + + W+A+I+ +G+HG G +AL+ F  M   G++P++ITF+++L
Sbjct: 345 GKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVL 404

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSH+GL+SEG+ +++ M+ EFGI+P ++HYGCMVDL GRAG L  A+  I+ M V+PD
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 464

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A++WGALL ACRI+ N+EL  + ++RLFE+D+ N GYYVL+SNIYA  G W+ V+ +R L
Sbjct: 465 AALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVL 524

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            + RG++K PG+SS+E+  K  +FY G+++HP+Y++IY  L  L  ++   GYVP+   V
Sbjct: 525 VKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSV 584

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D++ +E+E +L  HSE+LA+AF +++S   S I + KNLRVC DCH   K I+++T R
Sbjct: 585 LHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGR 644

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EII+RD  RFHHFKDG+CSCGDYW
Sbjct: 645 EIIIRDLKRFHHFKDGLCSCGDYW 668



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+++H   L+ G F  D + A++LLHMY        AR+ FD++P  +     AM SG  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 106 QSGNAVEALDILDEMRLEGVS--MDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEF 162
           ++      L I   M   G +  +D       L   AR  D  ++G  IH  + K GL+ 
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITG-GIHALVSKIGLDG 225

Query: 163 NLFVSNNLINMYAKFGM--MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
              V+N +I+ YAK G   +  A ++FD MM+RDVVSWN++IA Y Q+     A G ++ 
Sbjct: 226 QTGVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSK 284

Query: 221 MQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
           M   G  ++ + +TL ++    A     +  + +H  ++R G   ++V +G +VVDMY+K
Sbjct: 285 MLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMG-LEDNVYVGTSVVDMYSK 343

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G +  A   F+ +  K+++SW+ +I GY  +G   EA+ VF  M +   + PN  T+++
Sbjct: 344 CGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG-LKPNYITFIT 402

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP- 395
           +L A SH G L +G +     +K     +  V    C+VD+ G+ G +D+A  L  ++  
Sbjct: 403 VLAACSHAGLLSEG-RYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKV 461

Query: 396 RSSSVPWNAIIS 407
           +  +  W A++S
Sbjct: 462 KPDAALWGALLS 473



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 157/310 (50%), Gaps = 14/310 (4%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQS 107
           IH  V K+G +    VA +++  Y + G  ++  ARKLFD M  RD  SWN MI+ Y Q+
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQN 272

Query: 108 GNAVEALDILDEMRLEG--VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           G + EAL +  +M + G  V  + +T++++L  CA +  I +G  IH  +V+ GLE N++
Sbjct: 273 GLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVY 332

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  ++++MY+K G +  A + F ++  ++++SW+++IA Y        A   FT M+++G
Sbjct: 333 VGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG 392

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+ +T +++ +  +        R  +  +         V     +VD+  + G ++ A
Sbjct: 393 LKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEA 452

Query: 286 CAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
             + + + VK D   W  L++    Y    LA    E    ++       N G YV +  
Sbjct: 453 YGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDAT-----NSGYYVLLSN 507

Query: 342 AYSHVGALRQ 351
            Y+  G  ++
Sbjct: 508 IYAEAGMWKE 517



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSG-LRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI++Y + G  +EA+  + +  +  G +R +  T   VL AC +   +  GK+IH  V++
Sbjct: 265 MIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVR 324

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G E +V+V  S++ MY + G   +A K F  +  ++  SW+AMI+GY   G   EAL +
Sbjct: 325 MGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHV 384

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI-VKHGLEFNLFVSNNLINMYA 175
             +MR  G+  + IT  ++L  C+ +  +  G   +  +  + G+E  +     ++++  
Sbjct: 385 FTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLG 444

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +  +M ++ D   W ++++A
Sbjct: 445 RAGCLDEAYGLIKEMKVKPDAALWGALLSA 474


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 348/574 (60%), Gaps = 2/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           V  IL +CAR+  ++     H  I++  LE ++ + N LIN Y+K G +  A +VFD M+
Sbjct: 64  VHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGML 123

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER +VSWN++I  Y ++     A   F  M+  G +    T+ S+ S      D    + 
Sbjct: 124 ERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK 183

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H   ++    + ++ +G A++D+YAK G+I  A  VFE +  K  ++W++++ GY QN 
Sbjct: 184 LHCLSVKTCIDL-NLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 242

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +++  +  + +  NQ T  S++ A S++ AL +G ++HA + K+    +VFVA
Sbjct: 243 NYEEALLLYRRAQRMS-LEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           +  VDMY KCG + ++  +F +V   +   WN IIS    H +  + +  F +M  +G+ 
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TF SLL+ C H+GLV EG+R+F +M+  +G+ P++ HY CMVD+ GRAG L  A+ 
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 421

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I+++P  P ASIWG+LL +CR++ N+EL  VA+++LFE++ EN G +VL+SNIYA   +
Sbjct: 422 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQ 481

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           WE + + R L RD  +KK  G S I++ +KV  F  G   HP+  +I   L NL  K + 
Sbjct: 482 WEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRK 541

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY P     L DVE  +KE +L  HSE+LA+ FG++  P  SP++I KNLR+C DCH +
Sbjct: 542 FGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEF 601

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K  S  T R IIVRD NRFHHF DG CSCGD+W
Sbjct: 602 MKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 208/377 (55%), Gaps = 9/377 (2%)

Query: 37  VLKAC-RN--LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+ C RN  +++ K  H  ++++  E DV +   L++ Y + G   +AR++FD M  R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SWN MI  Y ++    EALDI  EMR EG      T++S+L  C  + + L    +H 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             VK  ++ NL+V   L+++YAK GM++ A++VF+ M ++  V+W+S++A Y Q+ +   
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   +   Q+  ++ +  TL S+    + L      + +H  I + G F  +V + ++ V
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSG-FGSNVFVASSAV 305

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYAK G +  +  +F  +  K++  WNT+I+G+A++    E + +F+ M++ + ++PN+
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ-DGMHPNE 364

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAMSLF 391
            T+ S+L    H G + +G +   ++++    L  +V   +C+VD+ G+ G + +A  L 
Sbjct: 365 VTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI 423

Query: 392 YQVPRSSSVP-WNAIIS 407
             +P   +   W ++++
Sbjct: 424 KSIPFDPTASIWGSLLA 440



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 2/188 (1%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N+     IL   +  GA+ +    H ++I+  L  DV +   L++ Y KCG ++ A  +F
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +   S V WN +I  +  +    +AL+ F +M +EG +    T  S+L+AC  +    
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDAL 179

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           E ++  H +  +  I  +L     ++DL+ + G +  A    ++M  +   + W +++  
Sbjct: 180 ECKK-LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVT-WSSMVAG 237

Query: 512 CRIHGNME 519
              + N E
Sbjct: 238 YVQNKNYE 245


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 339/562 (60%), Gaps = 2/562 (0%)

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           N+     +H  I  +G   NL V+N L+ MY + G +  A  +FD M +R   SW+ I+ 
Sbjct: 65  NLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVG 124

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y +  +  +    F  + ++G   D  +   +      L D +  R +H   ++ G   
Sbjct: 125 GYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDY 184

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
              +    +VDMYA+  ++  A  +F  +  +D+ +W  +I   A++G+  E++  F  M
Sbjct: 185 GHFVCAT-LVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRM 243

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                I P++   V+++ A + +GA+ +   IHA +       DV + T ++DMY KCG 
Sbjct: 244 RN-QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGS 302

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++ A  +F ++   + + W+A+I+ +G HGQG+KAL  F  ML  G+ P+ ITFVSLL A
Sbjct: 303 VESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYA 362

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSH+GL+ EGQR+F  M +E+G+ P +KHY CMVDL GRAG L  A   I+ MPV  D  
Sbjct: 363 CSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEV 422

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           +WGALLGACRIH +++L    +  L ++ S+  G+YVL+SNIYAN GKWE + + R L  
Sbjct: 423 LWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMT 482

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
             GL+K PG + IEV  K+  F  G++THP+  +IY  L+ L  K++  GY PD + VL 
Sbjct: 483 KGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLY 542

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           DV+E+ K+ +L SHSE+LAIAFG++  P   PI+I KNLRVCGDCH + KF+S I ++ I
Sbjct: 543 DVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTI 602

Query: 684 IVRDSNRFHHFKDGICSCGDYW 705
           IVRD+ RFHHFK+G+CSC DYW
Sbjct: 603 IVRDAKRFHHFKEGVCSCRDYW 624



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 231/435 (53%), Gaps = 5/435 (1%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH 71
           +E   C  +   +  L  D   F   L +CRNL   +++H  +   G   ++ VA  LL+
Sbjct: 34  NEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLY 93

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY   G    A++LFD M  R   SW+ ++ GY + GN      +  E+   G  +D  +
Sbjct: 94  MYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYS 153

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
              ++  C    ++  G LIH   +K GL++  FV   L++MYA+  ++  A ++F +M 
Sbjct: 154 APVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMW 213

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           +RD+ +W  +I A  +S  P+ +  FF  M+  GI PD + LV++    A+L     +++
Sbjct: 214 KRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKA 273

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H +I   G+ + DVI+G A++DMYAK G + SA  +F+ + V++VI+W+ +I  Y  +G
Sbjct: 274 IHAYINGTGYSL-DVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHG 332

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFV 370
              +A+E+F MM   + I PN+ T+VS+L A SH G + +G +  + +     +  DV  
Sbjct: 333 QGEKALELFPMMLR-SGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKH 391

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-E 428
            TC+VD+ G+ GR+D+A+ +   +P     V W A++    IH   D A    R +L  +
Sbjct: 392 YTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQ 451

Query: 429 GVRPDHITFVSLLTA 443
             +P H   +S + A
Sbjct: 452 SQKPGHYVLLSNIYA 466


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 345/574 (60%), Gaps = 3/574 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            S+L  C  S ++ +G  +H  ++  GL  +  ++  L+++YA  G++ HA R+FD M +
Sbjct: 66  TSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPK 125

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R+V  WN +I AY +      A   +  M   G++PD  T        A L D    R V
Sbjct: 126 RNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREV 185

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  ++   W  ED+ +   +VDMYAK G ++ A AVF+ + V+D + WN++I  Y QNG 
Sbjct: 186 HERVLGTHWG-EDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EA+ + + M   N + P   T VS + A +   AL +G ++H    +        + T
Sbjct: 245 PMEALSLCRDMA-ANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKT 303

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VR 431
            LVDMY K G +  A  LF Q+ +   V WNA+I  +G+HG  D+AL  F +M  E  V 
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVT 363

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PD+ITFV +L+AC+H G+V E + +F +M + + IKP ++H+ C+VD+ G AG    A++
Sbjct: 364 PDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYD 423

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I+ MP++PD+ IWGALL  C+IH N+ELG +A  +L E++ E+ G YVL+SNIYA  GK
Sbjct: 424 LIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGK 483

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           WE    VR L  +RGLKK  G S IE+  K   F  G+ +HP+  +IY+EL  L   M  
Sbjct: 484 WEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSD 543

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY+PD   V  DV +DEK +++ SHSERLAIAFG+IS+P  + + + KNLRVC DCH  
Sbjct: 544 AGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVV 603

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K ISQI +REII+RD NR+HHF +G CSC DYW
Sbjct: 604 IKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 173/572 (30%), Positives = 268/572 (46%), Gaps = 55/572 (9%)

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           ++ +  VL++C   R+L  G+++H  +L  G   D  +A  L+ +Y   GL   AR+LFD
Sbjct: 62  YHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFD 121

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            MP R+   WN +I  Y + G    A+ +   M   GV  D  T    L  CA   ++ +
Sbjct: 122 GMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLET 181

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H  ++      ++FV   L++MYAK G +  A  VFD++  RD V WNS+IAAY Q
Sbjct: 182 GREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQ 241

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           +  P+ A      M   G+ P + TLVS  S  A        R +HGF  RRG+  +D  
Sbjct: 242 NGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDK- 300

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           +  ++VDMYAK G +  A  +FE L  ++++SWN +I GY  +G   EA+++F  M    
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEA 360

Query: 328 EINPNQGTYVSILPAYSHVGALRQ-----GIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           ++ P+  T+V +L A +H G +++     G+ +    IK      V   TCLVD+ G  G
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPT----VQHFTCLVDVLGHAG 416

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFV 438
           R ++A  L   +P +  S  W A+++   IH     G+ AL    Q L E    D   +V
Sbjct: 417 RFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELAL----QKLIELEPEDAGNYV 472

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMP 497
            L    + SG   +  R   +M    G+K   K  GC  ++L G+       H F+    
Sbjct: 473 LLSNIYAQSGKWEKAARVRKLMTNR-GLK---KIIGCSWIELKGK------THGFLVGDA 522

Query: 498 VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
             P  A I+  L    R+ G M                + GY      ++ +VG  E  +
Sbjct: 523 SHPRSAEIYEELE---RLEGLM---------------SDAGYMPDTMPVFHDVGDDEKRN 564

Query: 557 EVRS----LARDRGLKKTPGWSSIEVNNKVDI 584
            +RS    LA   GL  TP  + + V   + +
Sbjct: 565 MMRSHSERLAIAFGLISTPSGTKLLVTKNLRV 596



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 181/362 (50%), Gaps = 12/362 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y R G    A+   Y+  +  G+ PD +T+P  LKAC  L+    G+++H  VL  
Sbjct: 134 LIRAYARDGPHEVAIQ-LYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGT 192

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  D+FV A L+ MY + G  + AR +FD + VRDS  WN+MI+ Y Q+G  +EAL + 
Sbjct: 193 HWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLC 252

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV     T+ S +   A +  +  G  +H +  + G +    +  +L++MYAK 
Sbjct: 253 RDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKS 312

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G ++ A  +F+Q+M+R++VSWN++I  Y        A   F  M+ +A + PD +T V +
Sbjct: 313 GWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGV 372

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S        + ++   G ++        V     +VD+    G    A  + +G+P++ 
Sbjct: 373 LSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQP 432

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVGALRQGI 353
           D   W  L+ G   +    + +E+ ++ +++  E+ P + G YV +   Y+  G   +  
Sbjct: 433 DSGIWGALLNGCKIH----KNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAA 488

Query: 354 KI 355
           ++
Sbjct: 489 RV 490


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 358/593 (60%), Gaps = 4/593 (0%)

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           + L  M L G+  +     ++L  C R   I  G  +H +++K      +++   LI  Y
Sbjct: 44  EALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFY 103

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K   +R A  VFD M ER+VVSW ++I+AY Q      A   F  M ++G +P+  T  
Sbjct: 104 VKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFA 163

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ +     +     R +H  I++   +   V +G++++DMYAK G I+ A  +F+ LP 
Sbjct: 164 TVLTSCIGSSGFVLGRQIHSHIIKLN-YEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPE 222

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           +DV+S   +I+GYAQ GL  EA+E+F+ ++    +  N  TY S+L A S + AL  G +
Sbjct: 223 RDVVSCTAIISGYAQLGLDEEALELFRRLQR-EGMQSNYVTYTSVLTALSGLAALDHGKQ 281

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H  ++++ +   V +   L+DMY KCG +  A  +F  +   + + WNA++  +  HG+
Sbjct: 282 VHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGE 341

Query: 415 GDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFH-MMQEEFGIKPHLKH 472
           G + L  F  M+DE  V+PD +T +++L+ CSH GL  +G   F+ M   +  ++P  KH
Sbjct: 342 GREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKH 401

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           YGC+VD+ GRAG +  A  F++ MP  P A+IWG LLGAC +H N+++G     +L +++
Sbjct: 402 YGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIE 461

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            EN G YV++SN+YA+ G+WE V  +R+L   + + K PG S IE++  +  F+  + +H
Sbjct: 462 PENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSH 521

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ E++  +++ L+A+ K  GYVPD S VL DV+E++KE IL SHSE+LA+ FG+I++P 
Sbjct: 522 PRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPE 581

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             PI++ KNLR+C DCHN+ K+ S+I  RE+ +RD NRFH    G CSCGDYW
Sbjct: 582 SVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 220/422 (52%), Gaps = 11/422 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++++++   RL EA+          GL  +F  +  VL  C   R + +G+++H  ++K 
Sbjct: 32  VLNIHIHDTRLREAL----LHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKT 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +   V++   L+  Y +      AR +FD MP R+  SW AMIS Y Q G A +AL + 
Sbjct: 88  HYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLF 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G   +  T A++L  C  S   + G  IH +I+K   E +++V ++L++MYAK 
Sbjct: 148 VQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKD 207

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F  + ERDVVS  +II+ Y Q      A   F  +Q+ G+Q + +T  S+ 
Sbjct: 208 GKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVL 267

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           + ++ L    + + VH  ++ R      V++ N+++DMY+K G +  A  +F+ L  + V
Sbjct: 268 TALSGLAALDHGKQVHNHLL-RSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTV 326

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN ++ GY+++G   E +E+F +M + N++ P+  T +++L   SH G   +G+ I  
Sbjct: 327 ISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFY 386

Query: 358 RVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
            +    +    D     C+VDM G+ GR++ A     ++P   S+  W  ++    +H  
Sbjct: 387 DMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSN 446

Query: 415 GD 416
            D
Sbjct: 447 LD 448


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 381/709 (53%), Gaps = 42/709 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           ++S Y + G   E +  F Q   + G +P  YT   VL+AC  L     GK IHC  +K+
Sbjct: 105 LVSGYCKNGCEVEGLRQFSQM-WSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKI 163

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG-SWNAMISGYCQSGNAVEALDI 116
             E ++FVA  L+ MY +      A  LF  +P R +   W AM++GY Q+G +++A+  
Sbjct: 164 QLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQC 223

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EMR +G+  +  T  SIL  C        G  +H  I+  G   N++V + L++MYAK
Sbjct: 224 FKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAK 283

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  + D M   DVV WNS+I           A   F  M    I+ D  T  S+
Sbjct: 284 CGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSV 343

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              +A   + +   SVH   ++ G F     + NA+VDMYAK G ++ A  VF  +  KD
Sbjct: 344 LKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSCALDVFNKILDKD 402

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISW +L+TGY  NG   +A+++F  M     ++ +Q     +  A + +  +  G ++H
Sbjct: 403 VISWTSLVTGYVHNGFHEKALQLFCDMRTA-RVDLDQFVVACVFSACAELTVIEFGRQVH 461

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A  IK+     +     L+ MY KCG ++DA+ +F  +   + + W AII          
Sbjct: 462 ANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAII---------- 511

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
                                       + +GLV  GQ YF  M++ +GIKP   HY CM
Sbjct: 512 -------------------------VGYAQNGLVETGQSYFESMEKVYGIKPASDHYACM 546

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG +  A + +  M V PDA+IW +LL ACR+HGN+ELG  A   L +++  N 
Sbjct: 547 IDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNS 606

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SN+++  G+WE    +R   +  G+ K PG+S IE+ ++V  F + +R+HP   
Sbjct: 607 LPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAA 666

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY ++  +   +K  G+VPD +F L+D++E+ KE  L  HSE+LA+AFG+++    +PI
Sbjct: 667 EIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPI 726

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IFKNLRVCGDCH+  K+IS I +R II+RD N FHHF +G CSCGD+W
Sbjct: 727 RIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 232/464 (50%), Gaps = 10/464 (2%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           + W++ ++A     Y   G    ARKLF++ P+++S +W++++SGYC++G  VE L    
Sbjct: 69  YTWNIMISA-----YANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M  +G      T+ S+L  C+    + +G +IH Y +K  LE N+FV+  L++MY+K  
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 179 MMRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            +  A  +F  + +R + V W +++  Y Q+ + + A   F  M+  G++ +  T  S+ 
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +    ++     R VHG I+  G F  +V + +A+VDMYAK G + SA  + + + + DV
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSG-FGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV 302

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN++I G   +G   EA+ +F  M    +I  +  TY S+L + +    L+ G  +H+
Sbjct: 303 VCWNSMIVGCVTHGYMEEALVLFHKMHN-RDIRIDDFTYPSVLKSLASCKNLKIGESVHS 361

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             IK        V+  LVDMY K G +  A+ +F ++     + W ++++ +  +G  +K
Sbjct: 362 LTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK 421

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M    V  D      + +AC+   ++  G R  H    +      L     ++
Sbjct: 422 ALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFG-RQVHANFIKSSAGSLLSAENSLI 480

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
            ++ + G L  A     +M  R   S W A++     +G +E G
Sbjct: 481 TMYAKCGCLEDAIRVFDSMETRNVIS-WTAIIVGYAQNGLVETG 523



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 172/375 (45%), Gaps = 36/375 (9%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--------- 217
           SN L++  +K G +  A ++FDQM  RD  +WN +I+AY    + + A            
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNS 99

Query: 218 ----------------------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
                                 F+ M   G +P   TL S+    + L+     + +H +
Sbjct: 100 ITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCY 159

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLAS 314
            ++      ++ +   +VDMY+K   +  A  +F  LP  K+ + W  ++TGYAQNG + 
Sbjct: 160 AIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESL 218

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +AI+ F+ M     +  N  T+ SIL A + + A   G ++H  +I +    +V+V + L
Sbjct: 219 KAIQCFKEMRN-QGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSAL 277

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KCG +  A  +   +     V WN++I     HG  ++AL  F +M +  +R D 
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T+ S+L + +    +  G+   H +  + G          +VD++ + G+L  A + + 
Sbjct: 338 FTYPSVLKSLASCKNLKIGES-VHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALD-VF 395

Query: 495 NMPVRPDASIWGALL 509
           N  +  D   W +L+
Sbjct: 396 NKILDKDVISWTSLV 410


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 346/559 (61%), Gaps = 6/559 (1%)

Query: 151 IHLYIVKHGLEFNLFVSNNLIN---MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           I  Y +K  L+ ++ V   LIN   +      M HA  +FDQ++++D++ +N +   Y +
Sbjct: 48  IQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYAR 107

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           SN P  A   F  +  +G+ PD  T  SL    A     R    +H F ++ G    ++ 
Sbjct: 108 SNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLG-LNHNIY 166

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
           I   +++MYA+   +N+A  VF+ +    ++S+N +ITGYA++   +EA+ +F+ ++  N
Sbjct: 167 ICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASN 226

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            I P   T +S++ + + +GAL  G  IH  V K      V V T L+DM+ KCG + DA
Sbjct: 227 -IEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDA 285

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           +S+F  +    +  W+A+I     HG G KA++ F +M  EGVRPD ITF+ LL ACSH+
Sbjct: 286 ISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHA 345

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV +G+ YF+ M + +GI P +KHYGCMVDL GRAGHL  A+NF+  + ++    +W  
Sbjct: 346 GLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRT 405

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LL AC  HGN+E+     +R+FE+D  + G YV++SN+YA VG+WE V+ +R L +DRG+
Sbjct: 406 LLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGV 465

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ-DVE 626
            K PG SS+EVNN V  F++G+  H    ++   L  L  ++K +GYVPD S V   D+E
Sbjct: 466 VKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADME 525

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+ KE +L  HSE+LA+AFG++++PP + I++ KNLR+CGDCHN  K IS I  R+I++R
Sbjct: 526 EEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIR 585

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D  RFH F+DG CSCGD+W
Sbjct: 586 DVQRFHRFEDGKCSCGDFW 604



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 214/412 (51%), Gaps = 11/412 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV----ARKLFDDMPVR 92
           +L  C +L + K+I    +K   + D+ V   L++ +C           A  LFD +  +
Sbjct: 35  LLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLIN-FCTLNPTTSYMDHAHHLFDQILDK 93

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D   +N M  GY +S +   A  +  E+   G+  D  T +S+L  CA S  +  G+ +H
Sbjct: 94  DIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLH 153

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
            + VK GL  N+++   LINMYA+   M  A  VFD+M +  +VS+N+II  Y +S+ P 
Sbjct: 154 CFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPN 213

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  +Q + I+P  +T++S+    A L      + +H ++ ++G F + V +  A+
Sbjct: 214 EALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKG-FDKYVKVNTAL 272

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DM+AK G +  A ++FEG+ V+D  +W+ +I  +A +G   +AI +F+ M+    + P+
Sbjct: 273 IDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKR-EGVRPD 331

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T++ +L A SH G + QG      + K   +   +    C+VD+ G+ G +D+A +  
Sbjct: 332 EITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV 391

Query: 392 YQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHITFVSL 440
            ++  +++ + W  ++S    HG  + A     ++  LD+    D++   +L
Sbjct: 392 DKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNL 443



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L SGL PD YTF  +LKAC   + L +G  +HC  +KLG   ++++  +L++MY      
Sbjct: 122 LCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDM 181

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           N AR +FD+M      S+NA+I+GY +S    EAL +  E++   +    +T+ S++  C
Sbjct: 182 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSC 241

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A    +  G  IH Y+ K G +  + V+  LI+M+AK G +  A+ +F+ M  RD  +W+
Sbjct: 242 ALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWS 301

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I A+    D + A   F  M++ G++PD +T + L    +        R     + + 
Sbjct: 302 AMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKT 361

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISWNTLITGYAQNGLASEAIE 318
                 +     +VD+  + G ++ A    + L +K   I W TL++  + +G    A  
Sbjct: 362 YGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKR 421

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVG 347
           V + + E ++   + G YV +   Y+ VG
Sbjct: 422 VIERIFELDD--AHGGDYVILSNLYARVG 448


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/591 (38%), Positives = 351/591 (59%), Gaps = 33/591 (5%)

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H +++  GL+    V + ++  YA  G +  ++ VF+ + E   + +NS+I AY +
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW------ 261
                     + +M   G   D  T   +     +L      + VHG I+R G       
Sbjct: 149 YGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 208

Query: 262 ------------------------FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                                    + DV   NA++  Y K G I++A A+FE +P +++
Sbjct: 209 ATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI 268

Query: 298 ISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +SW T+I+GY+Q+GLA +A+ +F +M++E + + PN  T +S+LPA + +  L +G +IH
Sbjct: 269 VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIH 328

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHGQ 414
               +  L  +  V   L  MY KCG + DA + F ++ R+    + WN +I+ +  +G 
Sbjct: 329 ELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH 388

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G +A++ FR+M+  G++PD ITF  LL+ CSHSGLV  G +YF+ M   + I P ++HY 
Sbjct: 389 GLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYA 448

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           C+ DL GRAG L  A   +  MP+    SIWG+LL ACR H N+E+   A+ +LF ++ E
Sbjct: 449 CVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPE 508

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           N G YVL+SN+YA  G+W+ VD++R++ + +G KK+PG S IE+N K  +F  G+ +HP+
Sbjct: 509 NTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQ 568

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++IY  L  L  KMK+ GY PD S+VL D+ E+EKE  L +HSE+LA+AFGI+++P ++
Sbjct: 569 GKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAET 628

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +++ KNLR+CGDCH    FIS+I  RE+IVRD NRFHHFK G CSCGDYW
Sbjct: 629 VLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 139/276 (50%), Gaps = 39/276 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y R G     V  ++    + G   D++TFP VLK+   L+    GK +H  +L++
Sbjct: 142 MIRAYARYGFAERTVATYFSMH-SWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRI 200

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA------------------ 99
           G ++D++VA SL+ +Y + G  N A K+FD+M +RD  SWNA                  
Sbjct: 201 GLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIF 260

Query: 100 -------------MISGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSDN 144
                        MISGY QSG A +AL + DEM  E  GV  + +T+ S+LP CA+   
Sbjct: 261 ERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLST 320

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSII 202
           +  G  IH    + GL  N  V   L  MYAK G +  A   FD++   E+++++WN++I
Sbjct: 321 LERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 380

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            AY      + A   F  M QAGIQPD +T   L S
Sbjct: 381 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 416



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 196/438 (44%), Gaps = 42/438 (9%)

Query: 29  PDFYTFPPV---LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P   ++ PV   L     L  G ++H  +L  G +    V + ++  Y   G  + +  +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           F+ +    S  +N+MI  Y + G A   +     M   G + D  T   +L       ++
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  I++ GL+F+L+V+ +LI +Y K G +  A +VFD M  RDV SWN+++A Y
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 247

Query: 206 EQSNDPITAHGFF-----------TTM----------QQA------------GIQPDLLT 232
            +S     A   F           TTM          QQA            G++P+ +T
Sbjct: 248 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 307

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           ++S+    AQL+     R +H    R G    +  +  A+  MYAK G +  A   F+ L
Sbjct: 308 IMSVLPACAQLSTLERGRQIHELACRMG-LNSNASVLIALTAMYAKCGSLVDARNCFDKL 366

Query: 293 --PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
               K++I+WNT+IT YA  G   +A+  F+ M +   I P+  T+  +L   SH G + 
Sbjct: 367 NRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAG-IQPDDITFTGLLSGCSHSGLVD 425

Query: 351 QGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISC 408
            G+K    +     +   V    C+ D+ G+ GR+ +A  L  ++P  +    W ++++ 
Sbjct: 426 VGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 485

Query: 409 HGIHGQGDKALNFFRQML 426
              H   + A    R++ 
Sbjct: 486 CRKHRNLEMAETAARKLF 503



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLT-SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLK 56
           MIS Y + G   +A+  F +     SG+RP++ T   VL AC  L     G++IH    +
Sbjct: 274 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACR 333

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG--SWNAMISGYCQSGNAVEAL 114
           +G   +  V  +L  MY + G    AR  FD +   +    +WN MI+ Y   G+ ++A+
Sbjct: 334 MGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAV 393

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNN 169
               EM   G+  D IT   +L  C+ S  +  GL     +   Y +   +E    V+  
Sbjct: 394 STFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVA-- 451

Query: 170 LINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
             ++  + G +  A ++  +M M      W S++AA
Sbjct: 452 --DLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 485



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%)

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +Y  +    + +  L+ G ++HA ++   L     V + +V  Y   G ID ++S+F  +
Sbjct: 72  SYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI 131

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
              SS+ +N++I  +  +G  ++ +  +  M   G   D+ TF  +L +      V  G 
Sbjct: 132 GEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG- 190

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
           +  H +    G++  L     ++ L+G+ G +  A     NM +R D S W ALL     
Sbjct: 191 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR-DVSSWNALLAGYTK 249

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV----DEVRSLARDRGLKKT 570
            G ++      +R+      N+  +  M + Y+  G  +      DE+  +  D G++  
Sbjct: 250 SGCIDAALAIFERM---PWRNIVSWTTMISGYSQSGLAQQALSLFDEM--VKEDSGVR-- 302

Query: 571 PGWSSI 576
           P W +I
Sbjct: 303 PNWVTI 308


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/699 (36%), Positives = 404/699 (57%), Gaps = 15/699 (2%)

Query: 13  EAVDCFYQFTLTSGLRPDFY-----TFPPV-LKACRNLVDGKKIHCSVLKLGF-EWDVFV 65
           EA   F        + P+ Y     +FP   L     L  G+++H  V+  G  ++ V +
Sbjct: 12  EATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITTGLVDFMVGI 71

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L++MY + G    AR++F  M  +DS SWN+MI+G  Q+G  +EA++    MR   +
Sbjct: 72  GNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEI 131

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                T+ S L  CA       G  IH   +K G++ N+ VSN L+ +YA+ G +    +
Sbjct: 132 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 191

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPI-TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +F  M E D VSWNSII A   S   +  A   F    +AG + + +T  S+ S V+ L+
Sbjct: 192 IFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLS 251

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTL 303
                + +HG  ++     ++    NA++  Y K G ++    +F  +  + D ++WN++
Sbjct: 252 FGELGKQIHGLALKYN-IADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSM 310

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+GY  N L ++A+++   M +  +   +   Y ++L A++ V  L +G+++HA  ++ C
Sbjct: 311 ISGYIHNELLAKALDLVWFMLQTGQ-RLDSFMYATVLSAFASVATLERGMEVHACSVRAC 369

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DV V + LVDMY KCGR+D A+  F  +P  +S  WN++IS +  HGQG++AL  F 
Sbjct: 370 LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFA 429

Query: 424 QM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            M LD    PDH+TFV +L+ACSH+GL+ EG ++F  M + +G+ P ++H+ CM DL GR
Sbjct: 430 NMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGR 489

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGAC-RIHG-NMELGAVASDRLFEVDSENVGYYV 540
           AG L    +FI  MPV+P+  IW  +LGAC R +G   ELG  A++ LF+++ EN   YV
Sbjct: 490 AGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYV 549

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+ N+YA  G+WE + + R   +D  +KK  G+S + + + V +F  G+++HP  + IY 
Sbjct: 550 LLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYK 609

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS-PIQIF 659
           +L+ L  KM+  GYVP   F L D+E++ KE IL+ HSE+LA+AF + +    + PI+I 
Sbjct: 610 KLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIM 669

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           KNLRVCGDCH+  K+IS+I  R+II+RDSNR+   +  I
Sbjct: 670 KNLRVCGDCHSAFKYISKIEGRQIILRDSNRYEDHQPQI 708


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/662 (37%), Positives = 374/662 (56%), Gaps = 5/662 (0%)

Query: 47  GKKIHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+ +H  ++K L      F+A  L++MY +      AR +    P R+  SW ++ISG  
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLA 84

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q+G+   AL    EMR EGV  +  T        A     ++G  IH   VK G   ++F
Sbjct: 85  QNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVF 144

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +  +MY K  +   A ++FD++ ER++ +WN+ I+       P  A   F   ++  
Sbjct: 145 VGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRID 204

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
             P+ +T  +  +  +          +HG ++R G F  DV + N ++D Y K   I S+
Sbjct: 205 GHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSG-FDTDVSVCNGLIDFYGKCKQIRSS 263

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             +F  +  K+ +SW +L+  Y QN    E   V  +    + +  +     S+L A + 
Sbjct: 264 EIIFTEMGTKNAVSWCSLVAAYVQNH-EDEKASVLYLRSRKDIVETSDFMISSVLSACAG 322

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +  L  G  IHA  +K C+   +FV + LVDMYGKCG I+D+   F ++P  + V  N++
Sbjct: 323 MAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSL 382

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGV--RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           I  +   GQ D AL  F +M   G    P+++TFVSLL+ACS +G V  G + F  M+  
Sbjct: 383 IGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRST 442

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +GI+P  +HY C+VD+ GRAG +  A+ FI+ MP++P  S+WGAL  ACR+HG  +LG +
Sbjct: 443 YGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLL 502

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
           A++ LF++D ++ G +VL+SN +A  G+W   + VR   +  G+KK  G+S I V N+V 
Sbjct: 503 AAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVH 562

Query: 584 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 643
            F   +R+H   ++I   L  L  +M++ GY PD    L D+EE+EK   ++ HSE+LA+
Sbjct: 563 AFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLAL 622

Query: 644 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
           AFG++S P   PI+I KNLR+CGDCH++ KF+S   +REIIVRD+NRFH FKDGICSC D
Sbjct: 623 AFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKD 682

Query: 704 YW 705
           YW
Sbjct: 683 YW 684



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 228/464 (49%), Gaps = 36/464 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS   + G  S A+  F++     G+ P+ +TFP   KA  +L   V GK+IH   +K 
Sbjct: 79  LISGLAQNGHFSTALVEFFEMR-REGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKC 137

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  S   MYC+  L + ARKLFD++P R+  +WNA IS     G   EA++  
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAF 197

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R      + IT  + L  C+   ++  G+ +H  +++ G + ++ V N LI+ Y K 
Sbjct: 198 IEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKC 257

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R +  +F +M  ++ VSW S++AAY Q+++   A   +   ++  ++     + S+ 
Sbjct: 258 KQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVL 317

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +      RS+H   + +      + +G+A+VDMY K G I  +   F+ +P K++
Sbjct: 318 SACAGMAGLELGRSIHAHAV-KACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEE--CNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++ N+LI GYA  G    A+ +F+ M    C    PN  T+VS+L A S  GA+  G+KI
Sbjct: 377 VTRNSLIGGYAHQGQVDMALALFEEMAPRGCGP-TPNYMTFVSLLSACSRAGAVENGMKI 435

Query: 356 HARVIKNCLCFDVFVAT-----------CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WN 403
                     FD   +T           C+VDM G+ G ++ A     ++P   ++  W 
Sbjct: 436 ----------FDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWG 485

Query: 404 AIISCHGIHGQGDKAL----NFFRQMLDEGVRPDHITFVSLLTA 443
           A+ +   +HG+    L    N F+  LD     +H+   +   A
Sbjct: 486 ALQNACRMHGKPQLGLLAAENLFK--LDPKDSGNHVLLSNTFAA 527


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/677 (36%), Positives = 380/677 (56%), Gaps = 37/677 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG---NAVEALDILD 118
           ++F   +LL  Y + G  +   + F+ +P RD  +WN +I GY  SG    AV+A + + 
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM- 126

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            M+    ++  +T+ ++L + + + ++  G  IH  ++K G E  L V + L++MY+K G
Sbjct: 127 -MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 179 MMRHALRVFDQM------------------------------MERDVVSWNSIIAAYEQS 208
            +  A +VF  +                              ME+D VSW+++I    Q+
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQN 245

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A   F  M+  G++ D     S+      L    + R +H  I+R     + + +
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTN-LQDHIYV 304

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           G+A++DMY K   ++ A  VF+ +  K+V+SW  ++ GY Q G A EA+++F  M+    
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSG- 363

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           I+P+  T    + A +++ +L +G + H + I   L   + V+  LV +YGKCG IDD+ 
Sbjct: 364 IDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDST 423

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF ++     V W A++S +   G+  +A+  F +M+  G++PD +T   +++ACS +G
Sbjct: 424 RLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAG 483

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV +GQRYF +M  E+GI P   HY CM+DLF R+G +  A  FI  MP RPDA  W  L
Sbjct: 484 LVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTL 543

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L ACR  GN+E+G  A++ L E+D  +   Y L+S+IYA+ GKW+ V ++R   +++ ++
Sbjct: 544 LSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVR 603

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG S I+   K+  F   + + P  ++IY +L  L  K+   GY PD SFV  DVEE 
Sbjct: 604 KEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEA 663

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
            K  +L  HSERLAIAFG+I  P   PI++ KNLRVC DCHN TK IS +T REI+VRD+
Sbjct: 664 VKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDA 723

Query: 689 NRFHHFKDGICSCGDYW 705
            RFH FKDG CSCGD+W
Sbjct: 724 VRFHRFKDGTCSCGDFW 740



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 202/396 (51%), Gaps = 40/396 (10%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF---DDMPV------------ 91
           GK+IH  V+KLGFE  + V + LL MY + G  + A+K+F   DD               
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 92  ---------------RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
                          +DS SW+AMI G  Q+G   EA++   EM++EG+ MD     S+L
Sbjct: 215 CGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVL 274

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
           P C     I  G  IH  I++  L+ +++V + LI+MY K   + +A  VFD+M +++VV
Sbjct: 275 PACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 334

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW +++  Y Q+     A   F  MQ++GI PD  TL    S  A ++        HG  
Sbjct: 335 SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKA 394

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +  G  +  + + N++V +Y K G I+ +  +F  + V+D +SW  +++ YAQ G A EA
Sbjct: 395 ITAG-LIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEA 453

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----T 372
           I++F  M +   + P+  T   ++ A S  G + +G +    +I     + +  +    +
Sbjct: 454 IQLFDKMVQLG-LKPDGVTLTGVISACSRAGLVEKGQRYFELMINE---YGIVPSNGHYS 509

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           C++D++ + GRI++AM     +P R  ++ W  ++S
Sbjct: 510 CMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 180/362 (49%), Gaps = 9/362 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI    + G   EA++CF +  +  GL+ D Y F  VL AC  L    DG++IH  +++ 
Sbjct: 238 MIKGLAQNGMEKEAIECFREMKI-EGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT 296

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  ++V ++L+ MYC+    + A+ +FD M  ++  SW AM+ GY Q+G A EA+ I 
Sbjct: 297 NLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIF 356

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D  T+   +  CA   ++  G   H   +  GL   + VSN+L+ +Y K 
Sbjct: 357 LDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKC 416

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  + R+F++M  RD VSW ++++AY Q    + A   F  M Q G++PD +TL  + 
Sbjct: 417 GDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVI 476

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           S  ++       +     ++     +      + ++D++++ G I  A     G+P + D
Sbjct: 477 SACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPD 536

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSHVGALRQG 352
            I W TL++     G         + + E +  +P   T +S + A    +  V  LR+G
Sbjct: 537 AIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRG 596

Query: 353 IK 354
           +K
Sbjct: 597 MK 598



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 207/443 (46%), Gaps = 70/443 (15%)

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           +IH  I++       F+ NN+++ YA      +A RVFD + + ++ SWN+++ AY +S 
Sbjct: 24  MIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSG 83

Query: 210 ---------------DPIT-----------------AHGFFTTMQQAGIQPDLLTLVSLT 237
                          D +T                    + T M+        +TL+++ 
Sbjct: 84  HLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTML 143

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---- 293
            + +        + +HG +++ G F   +++G+ ++DMY+K+G I+ A  VF GL     
Sbjct: 144 KLSSSNGHVSLGKQIHGQVIKLG-FESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNT 202

Query: 294 --------------------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
                                      KD +SW+ +I G AQNG+  EAIE F+ M +  
Sbjct: 203 VMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREM-KIE 261

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            +  +Q  + S+LPA   +GA+  G +IHA +I+  L   ++V + L+DMY KC  +  A
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
            ++F ++ + + V W A++  +G  G+  +A+  F  M   G+ PDH T    ++AC++ 
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
             + EG + FH      G+  ++     +V L+G+ G +  +      M VR + S W A
Sbjct: 382 SSLEEGSQ-FHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVS-WTA 439

Query: 508 LLGACRIHGNMELGAVASDRLFE 530
           ++ A    G     AV + +LF+
Sbjct: 440 MVSAYAQFGR----AVEAIQLFD 458



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 72/337 (21%)

Query: 241 AQLNDC------RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           AQ+  C      R+ + +HG I+R      +  + N +V  YA +     A  VF+G+P 
Sbjct: 8   AQIKQCIGLGASRHVKMIHGNIIRT-LPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQ 66

Query: 295 KDV-------------------------------ISWNTLITGYAQNGLASEAIEVFQMM 323
            ++                               ++WN LI GY+ +GL   A++ +  M
Sbjct: 67  PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 126

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK--- 380
            +    N  + T +++L   S  G +  G +IH +VIK      + V + L+DMY K   
Sbjct: 127 MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGC 186

Query: 381 ----------------------------CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
                                       CG I+DA+ LF  + +  SV W+A+I     +
Sbjct: 187 ISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEK-DSVSWSAMIKGLAQN 245

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G   +A+  FR+M  EG++ D   F S+L AC   G +++G R  H       ++ H+  
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDG-RQIHACIIRTNLQDHIYV 304

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
              ++D++ +   L  A      M  +   S W A++
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVS-WTAMV 340


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/686 (35%), Positives = 383/686 (55%), Gaps = 10/686 (1%)

Query: 20   QFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
            QF LT+ L+        ++ A   L     +H    KLG + + FV ++L+  Y   G+ 
Sbjct: 531  QFVLTTVLK--------LVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVV 582

Query: 80   NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
            + AR++FD +  +D+ +W AM+S Y ++      L I  +MR+    ++P  + S+L   
Sbjct: 583  SDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAA 642

Query: 140  ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
                +++ G  IH   VK   +    V   L++MYAK G +  A   F+ +   DV+ W+
Sbjct: 643  VCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWS 702

Query: 200  SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
             +I+ Y Q N    A   F  M ++ + P+  +L S+    A +      + +H   ++ 
Sbjct: 703  LMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKI 762

Query: 260  GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
            G    ++ +GNA++D+YAK   + S+  +F  L   + +SWNT+I GY+++G    A+ V
Sbjct: 763  G-HESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSV 821

Query: 320  FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
            F+ M   + +   Q TY S+L A +   ++    ++H  + K+    D  V+  L+D Y 
Sbjct: 822  FREMRAAS-VPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYA 880

Query: 380  KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
            KCG I DA  +F  +     V WNAIIS + +HGQ   A   F  M    ++ + ITFV+
Sbjct: 881  KCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVA 940

Query: 440  LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            LL+ C  +GLVS+G   F  M+ + GI+P ++HY C+V L GRAG L  A NFI ++P  
Sbjct: 941  LLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSA 1000

Query: 500  PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
            P A +W ALL +C +H N+ELG  +++++ E++ ++   YVL+SN+Y+  G  + V   R
Sbjct: 1001 PSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFR 1060

Query: 560  SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
               R+ G++K PG S +E+  +V  F  G+  HP    I   L  L  K    GYVPD  
Sbjct: 1061 KSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTD 1120

Query: 620  FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
             VL D+EE++K  +L  HSERLA+A+G++ +PP  PI+I KNLR C DCH   K IS+I 
Sbjct: 1121 EVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIV 1180

Query: 680  EREIIVRDSNRFHHFKDGICSCGDYW 705
            ++EIIVRD NRFHHF++G CSCGDYW
Sbjct: 1181 KQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/554 (26%), Positives = 269/554 (48%), Gaps = 23/554 (4%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLG--FEWDVFVAASLLHMYCRFGLANVARK 84
           D Y +  +L+ C    D   G+ +H  V++ G     D+F A  LL+MY + G    A +
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 144
           +FD +P R+  S+  ++ G+   G   EA  +   +R EG  ++   + ++L +    D 
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +     +H    K G + N FV + LI+ Y+  G++  A RVFD ++ +D V+W ++++ 
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y +++ P      F+ M+ A  + +   L S+      L+     + +H   ++  +  E
Sbjct: 607 YSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTE 666

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMM 323
             + G A++DMYAK G I  A   FE +   DVI W+ +I+ YAQ     +A E+F +MM
Sbjct: 667 RHVYG-ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
              + ++PN+ +  S+L A +++  L  G +IH   IK     ++FV   L+D+Y KC  
Sbjct: 726 R--SSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSD 783

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++ ++ +F  +   + V WN II  +   G G+ AL+ FR+M    V    +T+ S+L A
Sbjct: 784 MESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRA 843

Query: 444 CSHSGLVSE-GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           C+ +  ++  GQ   H + E+            ++D + + G +  A    + +    D 
Sbjct: 844 CASTASINHVGQ--VHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLK-ECDL 900

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVD 556
             W A++    +HG     A  +  LF++ S+N      + +  L+S   +     +G+ 
Sbjct: 901 VSWNAIISGYAVHGQ----AAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLS 956

Query: 557 EVRSLARDRGLKKT 570
              S+  D G++ +
Sbjct: 957 LFDSMRLDHGIEPS 970



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 223/460 (48%), Gaps = 14/460 (3%)

Query: 10   RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASL 69
            ++  AV     F LTS LR              ++V GK IH   +K  ++ +  V  +L
Sbjct: 622  KMRVAVSKLNPFALTSVLRAAV--------CLSSVVLGKGIHACSVKTLYDTERHVYGAL 673

Query: 70   LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
            L MY + G    AR  F+ +   D   W+ MIS Y Q     +A ++   M    VS + 
Sbjct: 674  LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE 733

Query: 130  ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
             +++S+L  CA    +  G  IH + +K G E  LFV N LI++YAK   M  +L +F  
Sbjct: 734  FSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSS 793

Query: 190  MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
            + + + VSWN+II  Y +S     A   F  M+ A +    +T  S+    A      + 
Sbjct: 794  LRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHV 853

Query: 250  RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
              VH  I  +  F  D I+ N+++D YAK G I  A  +FE L   D++SWN +I+GYA 
Sbjct: 854  GQVHCLI-EKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAV 912

Query: 310  NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDV 368
            +G A+ A E+F MM + N I  N  T+V++L      G + QG+ +   + + + +   +
Sbjct: 913  HGQAAMAQELFDMMSK-NSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSM 971

Query: 369  FVATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
               TC+V + G+ GR++DA++    +P + S++ W A++S   +H   +    F  + + 
Sbjct: 972  EHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELG-RFSAEKVL 1030

Query: 428  EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            E    D  T+V L    S +G + +   +F       G++
Sbjct: 1031 EIEPQDETTYVLLSNMYSAAGSLDQ-VAFFRKSMRNIGVR 1069



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 174/357 (48%), Gaps = 11/357 (3%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVD-GKKIHCSVLKL 57
            MIS Y +C +  +A + F +  + S + P+ ++   VL+AC N  L+D GK+IH   +K+
Sbjct: 704  MISRYAQCNQNEQAFELFIRM-MRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKI 762

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G E ++FV  +L+ +Y +      + ++F  +   +  SWN +I GY +SG    AL + 
Sbjct: 763  GHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVF 822

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             EMR   V    +T +S+L  CA + +I     +H  I K     +  VSN+LI+ YAK 
Sbjct: 823  REMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKC 882

Query: 178  GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            G +R A  +F+ + E D+VSWN+II+ Y        A   F  M +  I+ + +T V+L 
Sbjct: 883  GCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALL 942

Query: 238  SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKD 296
            S+           S+   +         +     +V +  + G +N A      +P    
Sbjct: 943  SVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPS 1002

Query: 297  VISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVGALRQ 351
             + W  L++    + +  + +E+ +   E+  EI P ++ TYV +   YS  G+L Q
Sbjct: 1003 AMVWRALLS----SCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQ 1055


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 390/667 (58%), Gaps = 5/667 (0%)

Query: 42  RNLVDGKKIHCSVL--KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           +NL  GK IH  ++      + ++    SL+++Y +     VAR LFD M  R+  SW A
Sbjct: 39  KNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGA 98

Query: 100 MISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           +++GY  +G  +E L +   M  ++ +  +    A+I+  C+ S  ++ G   H Y +K 
Sbjct: 99  LMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKS 158

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           GL F+ +V N LI MY++   ++ A+ V+ ++   DV S+N II    ++  P  A    
Sbjct: 159 GLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVL 218

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
             M    I  D +T V+   + + L D R    VH  + R G    D  + +A++DMY K
Sbjct: 219 DRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTG-AEYDSFVSSAIIDMYGK 277

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G I +A  VF  L  K+V+SW  ++  Y+QNG   EA+  F  ME  + + PN+ T+  
Sbjct: 278 CGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEME-VDGLLPNEYTFAV 336

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +L + + + AL  G  +H R+ K+     + V   L++MY K G I+ A  +F ++    
Sbjct: 337 LLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRD 396

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           S+ W+A+I     HG G +AL  F++ML     P ++TFV +L+AC+H G V EG  Y +
Sbjct: 397 SITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLN 456

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            + ++ GI+P ++HY C+V L  +AG L  A NF+++ PV+ D   W  LL AC +H N 
Sbjct: 457 QLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNY 516

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
            LG   ++ + ++D  +VG Y+L+SN+YA   +W+GV ++R L R+R +KK PG S IE+
Sbjct: 517 GLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEI 576

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            N + +F +  +THP+  +IY++++ L   ++ +GYVPD + V  DVE+++K   ++ HS
Sbjct: 577 RNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHS 636

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIA+G++ +P  +PI++ KNLR+C DCH+  K IS++T R IIVRD+NRFH F DG 
Sbjct: 637 EKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGG 696

Query: 699 CSCGDYW 705
           CSC DYW
Sbjct: 697 CSCADYW 703



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 233/433 (53%), Gaps = 10/433 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +++ Y   G + E +  F        +RP+ Y F  ++ +C +   +V+G + H   LK 
Sbjct: 99  LMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKS 158

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  +  +V  +L+ MY R      A  ++ ++P  D  S+N +I+G  ++G   EAL++L
Sbjct: 159 GLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVL 218

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D M  E +  D +T  +   +C+   ++  GL +H  + + G E++ FVS+ +I+MY K 
Sbjct: 219 DRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKC 278

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + +A +VF+++  ++VVSW +I+AAY Q+     A  FF  M+  G+ P+  T   L 
Sbjct: 279 GNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLL 338

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A ++   + + +H  I + G F + +I+GNA+++MY+K G I +A  VF  +  +D 
Sbjct: 339 NSCAGISALGHGKLLHTRIKKSG-FEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS 397

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W+ +I G + +GL  EA+ VFQ M    E  P+  T+V +L A +H+G++++G     
Sbjct: 398 ITWSAMICGLSHHGLGREALVVFQEMLAAKEC-PHYVTFVGVLSACAHLGSVQEGFYYLN 456

Query: 358 RVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH--- 412
           +++K   +   V   TC+V +  K GR+D+A +     P +   V W  ++S   +H   
Sbjct: 457 QLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNY 516

Query: 413 GQGDKALNFFRQM 425
           G G K      QM
Sbjct: 517 GLGKKVAELVLQM 529


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/665 (37%), Positives = 377/665 (56%), Gaps = 50/665 (7%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYC-----RFGLANVARKLFDDMPVRDSGSWNAMIS 102
           K+ H  +L+ G   D ++A SL+  Y      R+     + ++FD +   +   WN MI 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
              ++    +A+ +  EM +     +  T  ++L  C+ S  +  G+ +H ++VKHGL  
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
           +  + ++ I MYA FG +  A R+ D +  E D V WN++I  Y +  +   A   F  M
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
                 PD                    RS     M   W        NA++  +++ G+
Sbjct: 232 ------PD--------------------RS-----MISTW--------NAMISGFSRCGM 252

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A   F+ +  +D ISW+ +I GY Q G   EA+E+F  M++  +I P +    S+L 
Sbjct: 253 VEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK-EKIRPRKFVLPSVLS 311

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           A +++GAL QG  IH    +N +  D  + T LVDMY KCGRID A  +F ++       
Sbjct: 312 ACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 371

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WNA+I    +HG+ + A++ F +M    + P+ ITFV +L AC+H GLV +G   F+ M+
Sbjct: 372 WNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMR 428

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +E+G++P ++HYGC+VDL GRAG L  A   + ++P  P  ++WGALLGACR HGN+ELG
Sbjct: 429 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELG 488

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV-NN 580
                 L E++ +N G Y L+SNIYA  G+WE V EVR L ++RG+K TPG S I++   
Sbjct: 489 ERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRG 548

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           +V  F  G+ +HP+ + IY  L  +  +++  GY PD S VL D++E+EKE  +  HSE+
Sbjct: 549 EVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEK 608

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LAI FG+I++ P + I+I KNLRVC DCH+ TK ISQ+  REIIVRD  R+HHF++G CS
Sbjct: 609 LAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACS 668

Query: 701 CGDYW 705
           C D+W
Sbjct: 669 CKDFW 673



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 181/432 (41%), Gaps = 88/432 (20%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI V +      +A+  +Y+  +    RP+ YT+P VLKAC +   + +G ++H  ++K 
Sbjct: 109 MIKVCIENNEPFKAILLYYEMVVAHS-RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKH 167

Query: 58  GFEWDVFVAASLLHMYC--------------------------------RFGLANVARKL 85
           G   D  + +S + MY                                 RFG    AR+L
Sbjct: 168 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 227

Query: 86  FDDMPVR--------------------------------DSGSWNAMISGYCQSGNAVEA 113
           F+ MP R                                D  SW+AMI GY Q G  +EA
Sbjct: 228 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 287

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L+I  +M+ E +      + S+L  CA    +  G  IH Y  ++ ++ +  +  +L++M
Sbjct: 288 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 347

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK G +  A  VF++M  ++V SWN++I           A   F+ M    I P+ +T 
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITF 404

Query: 234 VSLTSIVAQLNDCRNSRSVHGFI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACA 287
           V +      LN C +   V   +     MR+ + +E  I     +VD+  + G++  A  
Sbjct: 405 VGV------LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 458

Query: 288 VFEGLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA---- 342
           V   +P +   + W  L+    ++G       V +++ E    N  + T +S + A    
Sbjct: 459 VVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGR 518

Query: 343 YSHVGALRQGIK 354
           +  VG +R+ +K
Sbjct: 519 WEEVGEVRKLMK 530


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 359/598 (60%), Gaps = 41/598 (6%)

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +S ++   L IH  +++ GL  N  ++  L   YA  G +  ++ VF+   E +V S+++
Sbjct: 56  KSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSA 115

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC--RNSRSVHGFIMR 258
           II ++ QS     A G+++ M   G++P+  T  S+      L  C   + + +H   ++
Sbjct: 116 IIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSV------LKSCSLESGKVLHCQAIK 169

Query: 259 RGWFMEDVIIGNAVVDMYA-------------------------------KLGIINSACA 287
            G    D+ +   +VD+YA                               K+G ++ A +
Sbjct: 170 LG-LGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARS 228

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +FEG+  +DV+ WN +I GYAQ+G+ +E++++F+ M     I PN+ T +++L A   +G
Sbjct: 229 LFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQLG 287

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G  IH+ +    +  +V V T L+DMY KCG ++DA  +F ++     V WN++I 
Sbjct: 288 ALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIV 347

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            + +HG    AL  F +M + G +P  ITF+ +L+AC H GLV EG+ +F +M++++GI+
Sbjct: 348 GYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIE 407

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P ++HYGCMV+L GRAGHL  A+  ++NM +  D  +WG LLG CR+H N++LG   +  
Sbjct: 408 PKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKF 467

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L +    N G YVL+SN+YA  G WEGV ++R+L ++ G++K  G SSIEV+NKV  F  
Sbjct: 468 LVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVA 527

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G R HPK ++IY  L  + + +K+ GY P    VL D+ E++KE  L  HSE+LAIAFG+
Sbjct: 528 GERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGL 587

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P + ++I KNLRVC DCH   K IS+IT R+I++RD NRFHHF+DG+CSCGDYW
Sbjct: 588 ISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 225/476 (47%), Gaps = 46/476 (9%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F  ++   +++    +IH S+L+ G   +  +   L   Y   G  + +  +F+     +
Sbjct: 50  FASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             S++A+I  + QS     A     +M   GV  +  T +S+L  C+    + SG ++H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHC 165

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--------------------- 192
             +K GL  +L+V   L+++YA+ G +  A ++FD+M E                     
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 193 ----------RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
                     RDVV WN +I  Y QS  P  +   F  M  A   P+ +T++++ S   Q
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQ 285

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L    + R +H +I  +G    +V +G A++DMY+K G +  A  VF+ +  KDV++WN+
Sbjct: 286 LGALESGRWIHSYIENKG-IQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNS 344

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I GYA +G +  A+++F+ M E     P   T++ IL A  H G + +G +   R++++
Sbjct: 345 MIVGYAMHGFSQHALQLFEEMTETGH-KPTDITFIGILSACGHGGLVEEG-RSFFRLMRD 402

Query: 363 CLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKAL 419
               +  +    C+V++ G+ G +++A  L   +  ++  V W  ++ C  +H       
Sbjct: 403 KYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGE 462

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
              + ++D+ +  +  T+V L    + +G   EG      + +E GI+   K +GC
Sbjct: 463 EIAKFLVDQKL-ANSGTYVLLSNMYAATG-NWEGVAKMRTLMKEHGIE---KEHGC 513



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 169/373 (45%), Gaps = 41/373 (10%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASL 69
           RL +    +Y   L+ G+ P+ +TF  VLK+C +L  GK +HC  +KLG   D++V   L
Sbjct: 124 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC-SLESGKVLHCQAIKLGLGSDLYVRTGL 182

Query: 70  LHMYCRFGLANVARKLFDDMP-------------------------------VRDSGSWN 98
           + +Y R G    AR+LFD MP                                RD   WN
Sbjct: 183 VDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWN 242

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
            MI GY QSG   E+L +   M +     + +TV ++L  C +   + SG  IH YI   
Sbjct: 243 VMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENK 302

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G++ N+ V   LI+MY+K G +  A  VFD++ ++DVV+WNS+I  Y        A   F
Sbjct: 303 GIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLF 362

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYA 277
             M + G +P  +T + + S           RS    +MR  + +E  I     +V++  
Sbjct: 363 EEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFR-LMRDKYGIEPKIEHYGCMVNLLG 421

Query: 278 KLGIINSACAVFEGLPV-KDVISWNTLI--TGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           + G +  A  + + + +  D + W TL+       N    E I  F + ++      N G
Sbjct: 422 RAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKL----ANSG 477

Query: 335 TYVSILPAYSHVG 347
           TYV +   Y+  G
Sbjct: 478 TYVLLSNMYAATG 490



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI  Y + G  +E++  F +  +   + P+  T   VL AC  L     G+ IH  +   
Sbjct: 244 MIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQLGALESGRWIHSYIENK 302

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +V V  +L+ MY + G    AR +FD +  +D  +WN+MI GY   G +  AL + 
Sbjct: 303 GIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLF 362

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
           +EM   G     IT   IL  C     +  G     L   K+G+E  +     ++N+  +
Sbjct: 363 EEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGR 422

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIA 203
            G +  A  +   M +  D V W +++ 
Sbjct: 423 AGHLEEAYGLVKNMTIAADPVLWGTLLG 450


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/665 (37%), Positives = 377/665 (56%), Gaps = 50/665 (7%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYC-----RFGLANVARKLFDDMPVRDSGSWNAMIS 102
           K+ H  +L+ G   D ++A SL+  Y      R+     + ++FD +   +   WN MI 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
              ++    +A+ +  EM +     +  T  ++L  C+ +  +  G+ +H ++VKHGL  
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
           +  + ++ I MYA FG +  A R+ D +  E D V WN++I  Y +  +   A   F  M
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
                 PD                    RS     M   W        NA++  +++ G+
Sbjct: 231 ------PD--------------------RS-----MISTW--------NAMISGFSRCGM 251

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A   F+ +  +D ISW+ +I GY Q G   EA+E+F  M++  +I P +    S+L 
Sbjct: 252 VEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK-EKIRPRKFVLPSVLS 310

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           A +++GAL QG  IH    +N +  D  + T LVDMY KCGRID A  +F ++       
Sbjct: 311 ACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 370

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WNA+I    +HG+ + A++ F +M    + P+ ITFV +L AC+H GLV +G   F+ M+
Sbjct: 371 WNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMR 427

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           +E+G++P ++HYGC+VDL GRAG L  A   + ++P  P  ++WGALLGACR HGN+ELG
Sbjct: 428 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELG 487

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV-NN 580
                 L E++ +N G Y L+SNIYA  G+WE V EVR L ++RG+K TPG S I++   
Sbjct: 488 ERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRG 547

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           +V  F  G+ +HP+ + IY  L  +  +++  GY PD S VL D++E+EKE  +  HSE+
Sbjct: 548 EVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEK 607

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LAI FG+I++ P + I+I KNLRVC DCH+ TK ISQ+  REIIVRD  R+HHF++G CS
Sbjct: 608 LAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACS 667

Query: 701 CGDYW 705
           C D+W
Sbjct: 668 CKDFW 672



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 182/432 (42%), Gaps = 88/432 (20%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI V +      +A+  +Y+  + +  RP+ YT+P VLKAC +   + +G ++H  ++K 
Sbjct: 108 MIKVCIENNEPFKAILLYYEM-MVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH 166

Query: 58  GFEWDVFVAASLLHMYC--------------------------------RFGLANVARKL 85
           G   D  + +S + MY                                 RFG    AR+L
Sbjct: 167 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 226

Query: 86  FDDMPVR--------------------------------DSGSWNAMISGYCQSGNAVEA 113
           F+ MP R                                D  SW+AMI GY Q G  +EA
Sbjct: 227 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 286

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
           L+I  +M+ E +      + S+L  CA    +  G  IH Y  ++ ++ +  +  +L++M
Sbjct: 287 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 346

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           YAK G +  A  VF++M  ++V SWN++I           A   F+ M    I P+ +T 
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITF 403

Query: 234 VSLTSIVAQLNDCRNSRSVHGFI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACA 287
           V +      LN C +   V   +     MR+ + +E  I     +VD+  + G++  A  
Sbjct: 404 VGV------LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 457

Query: 288 VFEGLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA---- 342
           V   +P +   + W  L+    ++G       V +++ E    N  + T +S + A    
Sbjct: 458 VVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGR 517

Query: 343 YSHVGALRQGIK 354
           +  VG +R+ +K
Sbjct: 518 WEEVGEVRKLMK 529


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/716 (33%), Positives = 395/716 (55%), Gaps = 14/716 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  Y R G+   +++ F +   ++G+R D +T+   L AC     L +GK +H   +  
Sbjct: 84  LIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLE 143

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VFV+ SL+ MY R G    AR++FD    RD  SWNA++SGY ++G   + L + 
Sbjct: 144 GIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVF 203

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYA 175
             MR  G+ ++   + S++  CA SD+ +  +   +H  +VK G + ++F+++ ++ MYA
Sbjct: 204 AMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYA 263

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI------TAHGFFTTMQQAGIQPD 229
           K G +  A+ +F  +++ +VV +N++IA   +    +       A   ++ +Q  G++P 
Sbjct: 264 KKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPT 323

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T  S+        D    + +HG +++   F  D  IG+A++D+Y   G +      F
Sbjct: 324 EFTFSSVIRACNLAGDIEFGKQIHGQVLKH-CFQGDDFIGSALIDLYLNSGCMEDGFRCF 382

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             +P +DV++W  +I+G  QN L   A+ +F  +     + P+  T  S++ A + +   
Sbjct: 383 TSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAG-LKPDPFTISSVMNACASLAVA 441

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
           R G +I     K+       +    + MY + G +  A+  F ++     V W+A+IS H
Sbjct: 442 RTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSH 501

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
             HG    AL FF +M+D  V P+ ITF+ +LTACSH GLV EG +Y+  M+EE+ + P 
Sbjct: 502 AQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPT 561

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           +KH  C+VDL GRAG L  A  FI++     +  IW +LL +CRIH +ME G + +DR+ 
Sbjct: 562 IKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIM 621

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           E+   +   YV + NIY + G+     ++R + ++RG+KK PG S IE+ + V  F  G+
Sbjct: 622 ELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGD 681

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
           ++HP+   IY +L  + +K+  L      S    D   +E+   +  HSE+LA+A G+I 
Sbjct: 682 KSHPESNAIYSKLAEMLSKIDKLTATDASSTKSDDTIRNEQS-WMNWHSEKLAVALGLIH 740

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            P  +PI++ KNLRVC DCH   K IS+  +REI++RD+ RFHHF+DG CSC DYW
Sbjct: 741 LPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 249/492 (50%), Gaps = 23/492 (4%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           L++C        +H  +++      +F+  +LL  YCR G    AR+L D+MP  ++ S+
Sbjct: 24  LRSCSAPRHAAAVHAHIVRAHPSPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSF 81

Query: 98  NAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           N +I  Y ++G    +L+     R   GV  D  T A+ L  C+R+  +  G  +H   V
Sbjct: 82  NLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSV 141

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             G+   +FVSN+L++MYA+ G M  A +VFD   ERD VSWN++++ Y ++        
Sbjct: 142 LEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLR 201

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLND--CRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
            F  M+++GI  +   L S+    A  +D     + +VHG +++ G F  DV + +A+V 
Sbjct: 202 VFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAG-FDSDVFLASAMVG 260

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA------SEAIEVFQMMEECNE 328
           MYAK G ++ A A+F+ +   +V+ +N +I G  ++  A       EA+ ++  ++    
Sbjct: 261 MYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQS-RG 319

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P + T+ S++ A +  G +  G +IH +V+K+C   D F+ + L+D+Y   G ++D  
Sbjct: 320 MEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGF 379

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             F  VP+   V W A+IS    +   ++AL  F ++L  G++PD  T  S++ AC+   
Sbjct: 380 RCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLA 439

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +   G++      + F  K     +  M    + ++ R+G +  A    Q M    D   
Sbjct: 440 VARTGEQI-----QCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESH-DIVS 493

Query: 505 WGALLGACRIHG 516
           W A++ +   HG
Sbjct: 494 WSAVISSHAQHG 505



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           R++ +VH  I+R       + + N ++  Y +LG    A  + + +P  + +S+N LI  
Sbjct: 31  RHAAAVHAHIVR-AHPSPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSFNLLIDA 87

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           Y++ G    ++E F        +  ++ TY + L A S  G LR+G  +HA  +   +  
Sbjct: 88  YSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAG 147

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            VFV+  LV MY +CG +  A  +F        V WNA++S +   G  D  L  F  M 
Sbjct: 148 GVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMR 207

Query: 427 DEGVRPDHITFVSLLTACSHS-GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
             G+  +     S++  C+ S   V +     H    + G    +     MV ++ + G 
Sbjct: 208 RSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGA 267

Query: 486 LGMAHNFIQNMPVRPDASIWGALL-GACRIHGNMELGAVASDRLFEV 531
           L  A    +++ + P+  ++ A++ G CR     +  AV +D L E 
Sbjct: 268 LSEAVALFKSV-LDPNVVVFNAMIAGLCR-----DEAAVGTDVLREA 308


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/650 (38%), Positives = 375/650 (57%), Gaps = 25/650 (3%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D F    +L +Y R G  + A+ +FD MP    GSW A++S +  SG+  EA  + D M+
Sbjct: 22  DSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQ 81

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
                 D I    +L V A   NI        Y      E +L     ++   A+ G M 
Sbjct: 82  ----ERDLIAWTIMLTVLATFSNIEDAK----YHFDQMPERDLVAWTAMLAANAERGQME 133

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI--QPDLLTLVSLTSI 239
           +A   FDQM ER++ SW S+++AY +S D   A   F +M +  +     +LT  SL+  
Sbjct: 134 NARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGD 193

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           V      R  R+      R      D+I   A++  YA  G +     +F+ +P +D+IS
Sbjct: 194 V-----VRAKRAFDSMPER------DLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLIS 242

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEE----CNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           W T++    +N L  E+ E+F  M         + PN+ T++++L A S +GAL +G KI
Sbjct: 243 WATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKI 302

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA V +     D+ V+  LV+ YG+CG + DA  +F  + R   + W+++IS     G+ 
Sbjct: 303 HAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRV 362

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           D+A+  + +ML EG  PD I F+S+L ACS+SG+V     +F  +  +  ++P L+HY C
Sbjct: 363 DEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYAC 422

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVD+ GRAG L  A + ++ MP  P   ++  +L AC+++ ++E G  A++ +FE+D EN
Sbjct: 423 MVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPEN 482

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              Y+ ++NIY+   + +    +R L  +RG+KK PG S IEV ++V  F  G++ HP+ 
Sbjct: 483 SSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQR 542

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           ++IY E++ L  +MK  GY  D   VLQDVEEDEKE++L  HSE+LAIAFG+IS+PP +P
Sbjct: 543 DEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAP 602

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++I KNLRVC DCH  TK IS++T REI+VRD+NRFHHF++G+CSC DYW
Sbjct: 603 LRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 234/538 (43%), Gaps = 64/538 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+S+Y R G LS A   F +       R    ++  +L A   L    +   ++     E
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMP-----RWSLGSWTALLSAF-ALSGHHEEAKTLFDTMQE 82

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            D+     +L +   F     A+  FD MP RD  +W AM++   + G    A +  D+M
Sbjct: 83  RDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQM 142

Query: 121 RLEGVSMDPITVASILPVCARSDNI---------------------LSGLLIHLYIVKHG 159
               +     +  S+L    RS ++                     L+G  +   +V+  
Sbjct: 143 PERNL----FSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAK 198

Query: 160 LEFNLFVSNNLI------NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             F+     +LI      + YA  G +R+   +F +M ERD++SW +++AA  +++    
Sbjct: 199 RAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEE 258

Query: 214 AHGFFTTMQQ-----AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           +   F  M +      G+ P+ +T ++L    + L      R +H  +  RG F  D+++
Sbjct: 259 SKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERG-FDTDLVV 317

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            NA+V+ Y + G +  A  VF+G+  +DVISW+++I+ +AQ G   EA+E++  M     
Sbjct: 318 SNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGT 377

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV-ATCLVDMYGKCGRIDDA 387
           + P+   ++S+L A S+ G +         ++ +           C+VD+ G+ G++ DA
Sbjct: 378 L-PDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDA 436

Query: 388 MSLFYQVP-RSSSVPWNAIISCHGIHG---QGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
             L   +P     + +  ++S   ++    +G+ A     ++  E   P +IT  ++ +A
Sbjct: 437 EDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSP-YITLANIYSA 495

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRP 500
                   +  R   +M EE GIK   K  GC  +++  R       H FI    + P
Sbjct: 496 AKRP---KDAARIRKLM-EERGIK---KKPGCSWIEVLDR------VHEFIAGDKMHP 540



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 158/388 (40%), Gaps = 60/388 (15%)

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           M+ + G +  A ++FD + +RD  SW  +++ Y +S D   A G F  M +      L +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWS----LGS 56

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             +L S  A       ++++   +  R     D+I    ++ + A    I  A   F+ +
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQER-----DLIAWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P +D+++W  ++   A+ G    A E F  M E N       ++ S+L AY   G     
Sbjct: 112 PERDLVAWTAMLAANAERGQMENARETFDQMPERNLF-----SWTSLLSAYGRSG----D 162

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           +K   RV  +   +++   T ++  Y   G +  A   F  +P    + W A++S +  +
Sbjct: 163 VKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFN 222

Query: 413 GQGDKALNFFRQM------------------------------------LDEGVRPDHIT 436
           G        F++M                                    L +G+ P+ +T
Sbjct: 223 GHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVT 282

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F++LL ACS  G ++EG R  H    E G    L     +V+ +GR G LG A      M
Sbjct: 283 FITLLDACSFLGALAEG-RKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM 341

Query: 497 PVRPDASIWGALLGA----CRIHGNMEL 520
             R D   W +++ A     R+   MEL
Sbjct: 342 R-RRDVISWSSMISAFAQRGRVDEAMEL 368


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/708 (35%), Positives = 400/708 (56%), Gaps = 18/708 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVDGKKIHCSVLKLG 58
           M+S +V  G  S+A+  +++  + +G+ P+ +TF  +L A     L  GK +H  ++   
Sbjct: 188 MVSSFVEAGSWSQALQLYHRM-IQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWR 246

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
            E ++ +  +L+ MYC+      A K+       D   W A+ISG+ QS    EA+    
Sbjct: 247 IELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFH 306

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK-F 177
           EM   GV  +  T + IL  C+    +  G  IH  +V  GLE ++ V N+L++MY K  
Sbjct: 307 EMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCS 366

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            M+  A+R F  +   +V+SW S+IA + +      +   F  MQ  G++P+  TL ++ 
Sbjct: 367 NMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTIL 426

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                +     +R +HG+I++      DV++GNA+VD YA LG+++ A  V   +  +DV
Sbjct: 427 GACGTIKSLTQTRKLHGYIIKNN-ADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDV 485

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I++ +L T   Q G    A+ +   M + +++  +  +  S L A + +  +  G ++H 
Sbjct: 486 ITYTSLATRINQTGNHEMALNIITHMNK-DDVRMDGFSLASFLSAAAGIPIMETGKQLHC 544

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K+ L   + V+  LVD+YGKCG I DA   F ++    +V WN +I     +G    
Sbjct: 545 YSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSS 604

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F  M   GV PD IT + +L ACSH GLV  G  YF  M+E+ GI+P L HY C+V
Sbjct: 605 ALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLV 664

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A N I+ MP +PDA I+  LLGAC++HGN+ LG   + +  E+D  +  
Sbjct: 665 DLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPA 724

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           +YVL++N+Y + G+ E  ++ R + R+RG++K PG S +E  N V +F  G+ +HP+  K
Sbjct: 725 FYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGK 784

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I++++ +L A+ ++ G               ++   L  HSE+LA+AFG+IS+PPK+PI+
Sbjct: 785 IHEKIESLIAQFRNQGIWY------------QENRALAHHSEKLAVAFGLISTPPKAPIR 832

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KN+R+C DCH++   ++++ +REIIVRD NRFH FK G CSC  YW
Sbjct: 833 IIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 217/406 (53%), Gaps = 8/406 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAM 100
           R++ DG  IH  ++K+GF+ D+F++ +LL +Y + FG+A  AR+LFD+MP RD  SW  +
Sbjct: 29  RSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAE-ARQLFDEMPCRDVASWTML 87

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           +S Y + GN  EAL++ D M + G   +  T+++ L  C+       G      + K G 
Sbjct: 88  MSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGF 147

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           + N  + + LI+ Y+K G  + A RVF+ M   D+VSW  +++++ ++     A   +  
Sbjct: 148 DSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHR 207

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKL 279
           M Q G+ P+  T V L +  + L      + VH  +M   W +E ++++  A+VDMY K 
Sbjct: 208 MIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMM--WRIELNLVLKTALVDMYCKC 264

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
             I  A  V +     DV  W  +I+G+ Q+    EAI  F  ME    + PN  TY  I
Sbjct: 265 QSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVV-PNNFTYSGI 323

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVPRSS 398
           L A S + AL  G +IH+RV+   L  DV V   LVDMY KC   I+DA+  F  +   +
Sbjct: 324 LNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPN 383

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
            + W ++I+    HG  ++++  F  M   GVRP+  T  ++L AC
Sbjct: 384 VISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/545 (27%), Positives = 263/545 (48%), Gaps = 18/545 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S Y + G   EA++ F    L SG  P+ +T    L++C   R    G +    V K 
Sbjct: 87  LMSAYGKIGNHEEALELFDSM-LISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKS 145

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +  + ++L+  Y + G    A ++F+ M   D  SW  M+S + ++G+  +AL + 
Sbjct: 146 GFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLY 205

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV+ +  T   +L   +    +  G L+H +++   +E NL +   L++MY K 
Sbjct: 206 HRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKC 264

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQS---NDPITAHGFFTTMQQAGIQPDLLTLV 234
             +  A++V    +E DV  W +II+ + QS    + ITA   F  M+ +G+ P+  T  
Sbjct: 265 QSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITA---FHEMETSGVVPNNFTYS 321

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-IINSACAVFEGLP 293
            + +  + +      + +H  ++  G    DV +GN++VDMY K   +I  A   F G+ 
Sbjct: 322 GILNACSSILALDLGKQIHSRVVMAG-LENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIA 380

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
             +VISW +LI G++++GL  E+I+VF  M+    + PN  T  +IL A   + +L Q  
Sbjct: 381 SPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVG-VRPNSFTLSTILGACGTIKSLTQTR 439

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           K+H  +IKN    DV V   LVD Y   G +DDA  +   +     + + ++ +     G
Sbjct: 440 KLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTG 499

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
             + ALN    M  + VR D  +  S L+A +   ++  G++  H    + G+   +   
Sbjct: 500 NHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQ-LHCYSVKSGLGSWISVS 558

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRLFEV 531
             +VDL+G+ G +  AH     +   PDA  W  L+     +G++   L A    RL  V
Sbjct: 559 NGLVDLYGKCGCIHDAHRSFLEI-TEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGV 617

Query: 532 DSENV 536
           + + +
Sbjct: 618 EPDQI 622



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 195/384 (50%), Gaps = 9/384 (2%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           I+  C  S ++  G+ IH  I+K G + ++F+SNNL+++Y K   +  A ++FD+M  RD
Sbjct: 22  IVSFC-NSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRD 80

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           V SW  +++AY +  +   A   F +M  +G  P+  TL +     + L +  +      
Sbjct: 81  VASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQA 140

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            + + G F  + ++G+A++D Y+K G    A  VFE +   D++SW  +++ + + G  S
Sbjct: 141 LVTKSG-FDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWS 199

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +A++++  M +   + PN+ T+V +L A S +G L  G  +HA ++   +  ++ + T L
Sbjct: 200 QALQLYHRMIQTG-VAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTAL 257

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KC  I+DA+ +           W AIIS      +  +A+  F +M   GV P++
Sbjct: 258 VDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNN 317

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T+  +L ACS S L  +  +  H      G++  +     +VD++ +  +  M  + ++
Sbjct: 318 FTYSGILNACS-SILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSN--MIEDAVR 374

Query: 495 NMP--VRPDASIWGALLGACRIHG 516
                  P+   W +L+     HG
Sbjct: 375 AFRGIASPNVISWTSLIAGFSEHG 398


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 370/643 (57%), Gaps = 8/643 (1%)

Query: 69   LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
            L+ MYC+     +A K+FD MP R+  SW+A++SG+  +G+   +L +  EM  +G+  +
Sbjct: 418  LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPN 477

Query: 129  PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
              T ++ L  C   + +  GL IH + +K G E  + V N+L++MY+K G +  A +VF 
Sbjct: 478  EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 537

Query: 189  QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ--PDLLTLVSLTSIVAQLNDC 246
            ++++R ++SWN++IA +  +     A   F  MQ+A I+  PD  TL SL    +     
Sbjct: 538  RIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI 597

Query: 247  RNSRSVHGFIMRRGWFM-EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               + +HGF++R G+       I  ++VD+Y K G + SA   F+ +  K +ISW++LI 
Sbjct: 598  YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLIL 657

Query: 306  GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            GYAQ G   EA+ +F+ ++E N    +     SI+  ++    LRQG ++ A  +K    
Sbjct: 658  GYAQEGEFVEAMGLFKRLQELNS-QIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSG 716

Query: 366  FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             +  V   +VDMY KCG +D+A   F ++     + W  +I+ +G HG G K++  F +M
Sbjct: 717  LETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEM 776

Query: 426  LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
            L   + PD + ++++L+ACSHSG++ EG+  F  + E  GIKP ++HY C+VDL GRAG 
Sbjct: 777  LRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGR 836

Query: 486  LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
            L  A + I  MP++P+  IW  LL  CR+HG++ELG      L  +D++N   YV+MSN+
Sbjct: 837  LKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNL 896

Query: 546  YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
            Y   G W      R L   +GLKK  G S +E+  +V  F +G  +HP    I + L+  
Sbjct: 897  YGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEA 956

Query: 606  TAKMK-SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS---SPPKSPIQIFKN 661
              +++  LGYV      L D++++ KE  L +HSE+LAI   + +   +     I++FKN
Sbjct: 957  ERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKN 1016

Query: 662  LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
            LRVC DCH + K +S+IT+   +VRD+ RFH F+DG CSCGDY
Sbjct: 1017 LRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1059



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 229/422 (54%), Gaps = 12/422 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S +V  G L  ++  F +     G+ P+ +TF   LKAC     L  G +IH   LK+
Sbjct: 449 LMSGHVLNGDLKGSLSLFSEMG-RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKI 507

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE  V V  SL+ MY + G  N A K+F  +  R   SWNAMI+G+  +G   +ALD  
Sbjct: 508 GFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTF 567

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLE--FNLFVSNNLINM 173
             M+   +   P   T+ S+L  C+ +  I +G  IH ++V+ G     +  ++ +L+++
Sbjct: 568 GMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDL 627

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A + FDQ+ E+ ++SW+S+I  Y Q  + + A G F  +Q+   Q D   L
Sbjct: 628 YVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFAL 687

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+  + A     R  + +    ++    +E  ++ N+VVDMY K G+++ A   F  + 
Sbjct: 688 SSIIGVFADFALLRQGKQMQALAVKLPSGLETSVL-NSVVDMYLKCGLVDEAEKCFAEMQ 746

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           +KDVISW  +ITGY ++GL  +++ +F  M   N I P++  Y+++L A SH G +++G 
Sbjct: 747 LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN-IEPDEVCYLAVLSACSHSGMIKEGE 805

Query: 354 KIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
           ++ +++++ + +   V    C+VD+ G+ GR+ +A  L   +P   +V  W  ++S   +
Sbjct: 806 ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 865

Query: 412 HG 413
           HG
Sbjct: 866 HG 867



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 205/416 (49%), Gaps = 16/416 (3%)

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            NL  SN LI+MY K      A +VFD M ER+VVSW+++++ +  + D   +   F+ M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            + GI P+  T  +       LN       +HGF ++ G+ M  V +GN++VDMY+K G 
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-VEVGNSLVDMYSKCGR 528

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN-EINPNQGTYVSIL 340
           IN A  VF  +  + +ISWN +I G+   G  S+A++ F MM+E N +  P++ T  S+L
Sbjct: 529 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 341 PAYSHVGALRQGIKIHARVIKNCL-C-FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
            A S  G +  G +IH  ++++   C     +   LVD+Y KCG +  A   F Q+   +
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            + W+++I  +   G+  +A+  F+++ +   + D     S++   +   L+ +G++   
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 459 M-MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + ++   G++  +     +VD++ + G +  A      M ++ D   W  ++     HG 
Sbjct: 709 LAVKLPSGLETSV--LNSVVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVVITGYGKHG- 764

Query: 518 MELGAVASDRLFE-----VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
             LG  +    +E     ++ + V Y  ++S    +    EG +    L    G+K
Sbjct: 765 --LGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIK 818



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 9/354 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI+ +V  G  S+A+D F      +   RPD +T   +LKAC +   +  GK+IH  +++
Sbjct: 550 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 609

Query: 57  LGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            GF       +  SL+ +Y + G    ARK FD +  +   SW+++I GY Q G  VEA+
Sbjct: 610 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 669

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +   ++     +D   ++SI+ V A    +  G  +    VK        V N++++MY
Sbjct: 670 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 729

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G++  A + F +M  +DV+SW  +I  Y +      +   F  M +  I+PD +  +
Sbjct: 730 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 789

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ S  +     +    +   ++        V     VVD+  + G +  A  + + +P+
Sbjct: 790 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 849

Query: 295 K-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           K +V  W TL++    +G      EV +++   +  NP    YV +   Y   G
Sbjct: 850 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNP--ANYVMMSNLYGQAG 901


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/648 (36%), Positives = 364/648 (56%), Gaps = 38/648 (5%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           M +  S S     S  C  G   +A D         +  DP   + +L  C +  ++  G
Sbjct: 27  MKISSSASLQEFTS-LCNDGRIKQAYDTFTS----EIWSDPSLFSHLLQSCIKLGSLFGG 81

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL------------------------ 184
             +H  I+  G   + F+SN+L+N Y+K G  + +L                        
Sbjct: 82  KQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQL 141

Query: 185 -------RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                  ++FD+M ER++ +WN++IA   Q      A   F  M   G  PD  TL S+ 
Sbjct: 142 GDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVL 201

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      + VH  +++ G+ +  V+ G+++  MY K G ++    + + +P++ V
Sbjct: 202 RGCAGLRSLLAGQEVHACLLKCGFELSSVV-GSSLAHMYIKSGSLSDGEKLIKSMPIRTV 260

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WNTLI G AQNG   E +  + MM+      P++ T+VS+L A S +  L QG +IHA
Sbjct: 261 VAWNTLIAGKAQNGCPEEVLNQYNMMKMAG-FRPDKITFVSVLSACSELATLGQGQQIHA 319

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            VIK      + V + L+ MY + G ++D++  F        V W+++I+ +G HG+G++
Sbjct: 320 EVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEE 379

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F QM D  +  + +TF+SLL ACSHSGL  +G  YF +M +++ +KP ++HY C+V
Sbjct: 380 ALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVV 439

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   I++MPV+PD  IW  LL AC++H   E+    S+ + ++D  +  
Sbjct: 440 DLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAA 499

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SNI+A+   W  V ++R   RDR ++K PG S +E+ N V  F  G+++HP+Y +
Sbjct: 500 SYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFE 559

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   L+ L +++K  GYVP+   VL D++ +EKE+ L  HSE+ AIAF ++++    PI+
Sbjct: 560 IDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIR 619

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + KNLRVC DCHN  K IS+I  REIIVRD++RFHHFKDG CSCG+YW
Sbjct: 620 VMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 221/446 (49%), Gaps = 43/446 (9%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           GR+ +A D F     TS +  D   F  +L++C    +L  GK++H  ++  G   D F+
Sbjct: 45  GRIKQAYDTF-----TSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFI 99

Query: 66  AASLLHMYCRFG--------LANV-----------------------ARKLFDDMPVRDS 94
           +  LL+ Y + G         +N+                       A+KLFD+M  R+ 
Sbjct: 100 SNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNI 159

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            +WNAMI+G  Q     +AL +  EM   G   D  T+ S+L  CA   ++L+G  +H  
Sbjct: 160 ATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHAC 219

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           ++K G E +  V ++L +MY K G +    ++   M  R VV+WN++IA   Q+  P   
Sbjct: 220 LLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV 279

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              +  M+ AG +PD +T VS+ S  ++L      + +H  +++ G      ++ ++++ 
Sbjct: 280 LNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVV-SSLIS 338

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MY++ G +  +   F      DV+ W+++I  Y  +G   EA+E+F  ME+  ++  N+ 
Sbjct: 339 MYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDL-KMEANEV 397

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
           T++S+L A SH G   +G +    ++K   L   +   TC+VD+ G+ GR+++A  +   
Sbjct: 398 TFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRS 457

Query: 394 VP-RSSSVPWNAIISCHGIHGQGDKA 418
           +P +   + W  +++   +H + + A
Sbjct: 458 MPVQPDGIIWKTLLAACKLHKEAEMA 483



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 155/317 (48%), Gaps = 8/317 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD +T   VL+ C   R+L+ G+++H  +LK GFE    V +SL HMY + G  +  
Sbjct: 189 GFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDG 248

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            KL   MP+R   +WN +I+G  Q+G   E L+  + M++ G   D IT  S+L  C+  
Sbjct: 249 EKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSEL 308

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH  ++K G    L V ++LI+MY++ G +  +++ F      DVV W+S+I
Sbjct: 309 ATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMI 368

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           AAY        A   F  M+   ++ + +T +SL    +              ++++   
Sbjct: 369 AAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKL 428

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQ 321
              +     VVD+  + G +  A  +   +PV+ D I W TL+   A   L  EA    +
Sbjct: 429 KPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLL---AACKLHKEAEMAER 485

Query: 322 MMEECNEINP-NQGTYV 337
           + EE  +++P +  +YV
Sbjct: 486 ISEEIIKLDPLDAASYV 502


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/675 (38%), Positives = 372/675 (55%), Gaps = 48/675 (7%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV---ARKLFDDMPVRD 93
           +L  C +L   K+IH  + K G   D  V   LL ++C   +++    A +LF   P  D
Sbjct: 8   LLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLL-LHCAITISDALHYALRLFHHFPNPD 66

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIH 152
           +   N +I     S   + +L    ++R +  +S D  T A  L   A S ++  G+ +H
Sbjct: 67  TFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
               +HG + ++FV   LI+MYA+ G    A RVFD+M E +VV+WN+++ A  +  D  
Sbjct: 127 SQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVE 186

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  M           + +LTS                      W        N +
Sbjct: 187 GAQDVFGCM----------PVRNLTS----------------------W--------NGM 206

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +  YAK G +  A  VF  +P++D +SW+T+I G+A NG   EA   F+ +    EI  N
Sbjct: 207 LAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLR-EEIRTN 265

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + +   +L A +  GA   G  +H  V K    +   V   L+D Y KCG +  A  +F 
Sbjct: 266 EVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQ 325

Query: 393 QVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            +P + S V W +II+   +HG G++A+  F +M + GVRPD ITF+SLL ACSHSGLV 
Sbjct: 326 NMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVE 385

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG   F  M+  +GI+P ++HYGCMVDL+GRA  L  A+ FI  MPV P+A IW  LLGA
Sbjct: 386 EGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGA 445

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C IHGN+E+  +   RL E+D +N G +VL+SN+YA  GKW+ V  +R    +  +KKTP
Sbjct: 446 CSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTP 505

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS-LGYVPDKSFVLQDVEEDEK 630
           GWS IE++  +  F  G + +   E+ +++LR +  ++++  GY P    VL D+EE+EK
Sbjct: 506 GWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEK 565

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E  ++ HSE+LA AFGI   P    ++I KNLRVCGDCH   K IS++ + EIIVRD +R
Sbjct: 566 EDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSR 625

Query: 691 FHHFKDGICSCGDYW 705
           FH FKDG CSC DYW
Sbjct: 626 FHSFKDGFCSCRDYW 640



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 34/361 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIH-CSVLK 56
           +IS+Y  CG    A   F + +      P+  T+  VL A   C ++   + +  C  ++
Sbjct: 144 LISMYAECGDSGSARRVFDEMS-----EPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVR 198

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W+  +A      Y + G   +AR++F +MP+RD  SW+ MI G+  +G   EA   
Sbjct: 199 NLTSWNGMLAG-----YAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGF 253

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             E+  E +  + +++  +L  CA++     G ++H ++ K G  +   V+N LI+ Y+K
Sbjct: 254 FRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSK 313

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            G +  A  VF  M + R +VSW SIIA          A   F  M+++G++PD +T +S
Sbjct: 314 CGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFIS 373

Query: 236 LTSIVAQLNDCRNSRSVH---GFI--MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVF 289
           L      L  C +S  V    G    M+  + +E  I     +VD+Y +   +  A    
Sbjct: 374 L------LYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFI 427

Query: 290 EGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINP-NQGTYVSILPAYSHV 346
             +PV  + I W TL+   + +G     IE+ ++++    E++P N G +V +   Y+  
Sbjct: 428 CEMPVSPNAIIWRTLLGACSIHG----NIEMAELVKARLAEMDPDNSGDHVLLSNVYAVA 483

Query: 347 G 347
           G
Sbjct: 484 G 484



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/341 (19%), Positives = 138/341 (40%), Gaps = 62/341 (18%)

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-IINSACAVFEGLPVKD 296
           S++++ +  + ++ +H  I + G   + ++ G  ++     +   ++ A  +F   P  D
Sbjct: 7   SLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPD 66

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
               NTLI   + +     ++  F  +     ++P+  T+   L A ++   LR GI++H
Sbjct: 67  TFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS----CHGIH 412
           ++  ++     +FV T L+ MY +CG    A  +F ++   + V WNA+++    C  + 
Sbjct: 127 SQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVE 186

Query: 413 GQGD---------------------KA--LNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           G  D                     KA  L   R++  E    D +++ +++   +H+G 
Sbjct: 187 GAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGC 246

Query: 450 VSEGQRYF-HMMQEEF--------GIKPHLKHYG-------------------------C 475
             E   +F  +++EE         G+       G                          
Sbjct: 247 FDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNA 306

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           ++D + + G++ MA    QNMPV      W +++    +HG
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHG 347


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/708 (35%), Positives = 381/708 (53%), Gaps = 72/708 (10%)

Query: 66  AASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           A SL+      G    A   FD +P   RD+   NAM+S + ++  A  A+ +   +   
Sbjct: 95  ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 124 G-VSMDPITVASILPVCARSDNILSG--LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           G +  D  +  +++    +  N+ +     +H  ++K G    L VSN LI +Y K    
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 181 R---HALRVFDQMMERDVVSW-------------------------------NSIIAAYE 206
                A +V D+M ++D ++W                               N++I+ Y 
Sbjct: 215 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 274

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFMED 265
           QS     A   F  M    +  D  T  S+ S  A      + +SVHG I+R +  F+ +
Sbjct: 275 QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 334

Query: 266 VI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               + NA+V +Y+K G I  A  +F+ + +KDV+SWNT+++GY  +G   +A+EVF++M
Sbjct: 335 AALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVM 394

Query: 324 EECN------------------------------EINPNQGTYVSILPAYSHVGALRQGI 353
              N                              ++ P   TY   + A   +GAL+ G 
Sbjct: 395 PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGR 454

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++HA +++            L+ MY KCG ++DA  +F  +P   SV WNA+IS  G HG
Sbjct: 455 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 514

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +AL  F QM+ EG+ PD I+F+++LTAC+H+GLV EG  YF  M+ +FGI P   HY
Sbjct: 515 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 574

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
             ++DL GR+G +G A + I+ MP  P  SIW A+L  CR +G+ME GA A+D+LF +  
Sbjct: 575 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 634

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           ++ G Y+L+SN Y+  G+W     VR L RDRG+KK PG S IEV +K+ +F  G+  HP
Sbjct: 635 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHP 694

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK 653
           + +++Y  L  + A+M+ LGYVPD  FVL D+E  EKE+IL +HSE+LA+ FG++  PP 
Sbjct: 695 EAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPG 754

Query: 654 SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           + + + KNLR+CGDCH    F+S+   REI+VRD  RFHHFKDG CSC
Sbjct: 755 ATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 252/558 (45%), Gaps = 97/558 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDG--KKIHCSVL 55
           M+S + R    + AV  F+    +  LRPD Y+F  ++ A     NL      ++HCSVL
Sbjct: 131 MMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVL 190

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANV---ARKLFDDMPVRDSGS---------------- 96
           K G    + V+ +L+ +Y +         ARK+ D+MP +D  +                
Sbjct: 191 KSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNA 250

Query: 97  ---------------WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
                          WNAMISGY QSG   +A ++   M  E V +D  T  S+L  CA 
Sbjct: 251 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACAN 310

Query: 142 SDNILSGLLIHLYIVKHGLEF----NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           +   + G  +H  I++    F     L V+N L+ +Y+K G +  A R+FD M  +DVVS
Sbjct: 311 AGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVS 370

Query: 198 WNSIIAAYEQS----------------ND-------PITAHG--------FFTTMQQAGI 226
           WN+I++ Y  S                ND           HG         F  M+   +
Sbjct: 371 WNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 430

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P   T     +   +L   ++ R +H  +++ G F      GNA++ MYAK G +N A 
Sbjct: 431 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG-FEASNSAGNALLTMYAKCGAVNDAR 489

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSH 345
            VF  +P  D +SWN +I+   Q+G   EA+E+F QM+ E   I+P++ ++++IL A +H
Sbjct: 490 LVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAE--GIDPDRISFLTILTACNH 547

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            G + +G      + ++   F +         L+D+ G+ GRI +A  L   +P   +  
Sbjct: 548 AGLVDEGFHYFESMKRD---FGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 604

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVR--PDHI-TFVSLLTACSHSGLVSEGQRYF 457
            W AI+S  G    GD  + F     D+  R  P H  T++ L    S +G   +  R  
Sbjct: 605 IWEAILS--GCRTNGD--MEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVR 660

Query: 458 HMMQEEFGIKPHLKHYGC 475
            +M++  G+K   K  GC
Sbjct: 661 KLMRDR-GVK---KEPGC 674


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/670 (37%), Positives = 378/670 (56%), Gaps = 6/670 (0%)

Query: 40  ACRNLVDGKKIHCSVLKL-GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           A R+   G+  H   L+L       F+ A L+++Y +  L   A       P     S+ 
Sbjct: 27  ASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYT 86

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVK 157
           A ISG  Q G  + AL     M   G+  +  T  S     A +    + G  IH   ++
Sbjct: 87  AFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIR 146

Query: 158 HG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            G L  + FVS   ++MY K G ++ A  +F +M  R+VV+WN+++        P+    
Sbjct: 147 FGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIE 206

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            +  +++AG  P++++  +  +  A           HGF+++ G+ M DV + N++VD Y
Sbjct: 207 AYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEM-DVSVLNSMVDFY 265

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K      A AVF+G+ V++ +SW +++  YAQNG   EA   +       E  P     
Sbjct: 266 GKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE-EPTDFMV 324

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S L   + +  L  G  +HA  +++C+  ++FVA+ LVDMYGKCG ++DA  +FY+ P+
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 384

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQR 455
            + V WNA+I  +   G    AL  F  M+  G   P++IT V+++T+CS  GL  +G  
Sbjct: 385 RNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYE 444

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
            F  M+E FGI+P  +HY C+VDL GRAG    A+  IQ MP+RP  S+WGALLGAC++H
Sbjct: 445 LFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMH 504

Query: 516 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575
           G  ELG +A+++LFE+D ++ G +VL+SN++A+ G+W    ++R   ++ G+KK PG S 
Sbjct: 505 GKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSW 564

Query: 576 IEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILT 635
           +   N V +F   +  H  Y +I   L  L  +M++ GY+PD  + L D+EE+EKE  + 
Sbjct: 565 VTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVF 624

Query: 636 SHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 695
            HSE+LA+AFG+I  PP  PI+I KNLR+C DCH   KFIS I  REIIVRD+NRFHHFK
Sbjct: 625 QHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFK 684

Query: 696 DGICSCGDYW 705
              CSCGDYW
Sbjct: 685 QYQCSCGDYW 694



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 207/425 (48%), Gaps = 15/425 (3%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKL 57
           IS   + GR   A+  F    L  GLRP+ +TFP   KA  +       G +IH   ++ 
Sbjct: 89  ISGAAQHGRPLPALSAFAGM-LRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRF 147

Query: 58  GF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G+   D FV+ + L MY + G   +AR LF +MP R+  +WNA+++     G  +E ++ 
Sbjct: 148 GYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEA 207

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              +R  G   + ++  +    CA +  +  G   H ++VK G E ++ V N++++ Y K
Sbjct: 208 YFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGK 267

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
                 A  VFD M  R+ VSW S++AAY Q+     A   +   +++G +P    + S 
Sbjct: 268 CRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSA 327

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A L      R++H  +  R     ++ + +A+VDMY K G +  A  +F   P ++
Sbjct: 328 LTTCAGLLGLHLGRALHA-VAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRN 386

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +++WN +I GYA  G A  A+ VF  M    E  PN  T V+++ + S  G  + G ++ 
Sbjct: 387 LVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELF 446

Query: 357 ARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
             + +    F +   T    C+VD+ G+ G  + A  +   +P   S+  W A++    +
Sbjct: 447 ETMRER---FGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 503

Query: 412 HGQGD 416
           HG+ +
Sbjct: 504 HGKTE 508


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/697 (34%), Positives = 389/697 (55%), Gaps = 35/697 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           +L+ C  + +  +IH   +K G   +      ++   C     +V  ARK+FD++P    
Sbjct: 41  LLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSV 100

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             WN MI GY +   +   + +   M +  +  D  T   +L    +   +  G ++  +
Sbjct: 101 FIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNH 160

Query: 155 IVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            V HG L+ NLFV    I++++  G++ +A ++FD     +VV+WN +++ Y +      
Sbjct: 161 AVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEE 220

Query: 214 AHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
           +   F  M++    + P+ +TLV + S  ++L D    + ++   ++ G    ++I+ NA
Sbjct: 221 SKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENA 280

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE------ 325
           ++DM+A  G +++A  VF+ +  +DVISW +++TG+A       A + F  M E      
Sbjct: 281 LIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSW 340

Query: 326 ------------------------CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
                                    + + P++ T VSIL A +H+GAL  G      + K
Sbjct: 341 TAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDK 400

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
           N +  D F+   L+DMY KCG ++ A  +F ++ +     W A+I     +G G++AL  
Sbjct: 401 NKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTM 460

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           F  ML+  V PD IT++ ++ AC+H GLV++G+ +F  M  + GIKP+L HYGCMVDL G
Sbjct: 461 FSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLG 520

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAGHL  A   I NMPV+P++ +WG+LLGACR+H N++L  +A++ + E++ EN   YVL
Sbjct: 521 RAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVL 580

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           + NIYA   KW+ +  VR +  +RG+KK PG S +E+N  V  F  G+++HP+ ++IY +
Sbjct: 581 LCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAK 640

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L N+   + + GY PD S V  DV E++KE  L  HSE+LAIA+ +ISS     I+I KN
Sbjct: 641 LENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKN 700

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           LR+C DCH+    +S++  RE+IVRD  RFHHF+ G+
Sbjct: 701 LRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHGL 737



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 220/452 (48%), Gaps = 43/452 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y R    SE+    Y+  L   ++PD +TFP +LK       L  GK +    +  
Sbjct: 106 MIKGYSRIN-CSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIH 164

Query: 58  GF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           GF + ++FV    +H++   GL N ARK+FD     +  +WN ++SGY +     E+  +
Sbjct: 165 GFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRL 224

Query: 117 LDEM--RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL-EFNLFVSNNLINM 173
             EM  + E VS + +T+  +L  C++  +++ G  I+   +K G+ E NL + N LI+M
Sbjct: 225 FIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDM 284

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT------------- 220
           +A  G M  A  VFD+M  RDV+SW SI+  +  +     A  +F               
Sbjct: 285 FASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMI 344

Query: 221 ------------------MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
                             MQ + ++PD  T+VS+ +  A L           +I  +   
Sbjct: 345 DGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYI-DKNKI 403

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D  IGNA++DMY K G +  A  +F  +  KD  +W  +I G A NG   EA+ +F  
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKC 381
           M E + + P++ TY+ ++ A +HVG + +G    + + +++ +  ++    C+VD+ G+ 
Sbjct: 464 MLEAS-VTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRA 522

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           G + +A+ +   +P + +S+ W +++    +H
Sbjct: 523 GHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/611 (39%), Positives = 372/611 (60%), Gaps = 6/611 (0%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN--ILSGLLIHLYIVKH 158
           ++ +  +G   EAL     M   G   D +T + IL   A+     I  G  IH Y    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           GL  N+ V   +I+MY K G +  A   F+++  ++ V+WN+++  Y+       A   F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 219 TTM--QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-EDVIIGNAVVDM 275
             M  +    +PD  +        + L D    R +H  + R G  + +DV++G A+++M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 276 YAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           Y+K G +  A  VF+ +    D + WN +I  YAQ+G   +A+++++ M +  ++ P QG
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T+V+++   + + AL+QG  IHARV       ++ V+  LV MYGKCG +D+A+ +F+ +
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
                + WN IIS +  HG  D+AL  +++M  +GV+P  +TFV LL+ACSH GLV++G 
Sbjct: 301 KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 360

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            YF+ MQ++  IKP + H+GC++DL GR G L  A   +++MP++ +A  W +LLGAC+ 
Sbjct: 361 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKT 420

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           HG+++ G  A+D++ +      G YVL+SNIYA  G+W+ V+++R +   RG+KK+PG S
Sbjct: 421 HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKS 480

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            IE+ + V  F +G+R+HP+ E+IY EL  +  +MK LGYVPD S V  D+EE+EKE +L
Sbjct: 481 WIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLL 540

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
             HSE+LAI +G +  P KS ++I KNLRVC DCH  TKF+S+IT R+I+VRD+ RFH F
Sbjct: 541 VCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLF 600

Query: 695 KDGICSCGDYW 705
           ++G CSC DYW
Sbjct: 601 ENGSCSCRDYW 611



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/429 (28%), Positives = 224/429 (52%), Gaps = 16/429 (3%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN-----LVDGKKIHCSVLKLGFEWDVFVA 66
           SEA+  F++    SG RPD  TF  +L A        +  G++IH      G   +V V 
Sbjct: 11  SEAL-VFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVG 69

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM--RLEG 124
            +++ MY + G  + AR  F+++  ++S +WNAM++ Y   G   EAL++  EM  R   
Sbjct: 70  TAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRS 129

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF--NLFVSNNLINMYAKFGMMRH 182
              D  + +  +  C+  +++  G  IH  + + G E   ++ V   L+NMY+K G +  
Sbjct: 130 ARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEE 189

Query: 183 ALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIV 240
           A +VFD +  + D V WN++IAAY Q      A   + +M     + P   T V++  + 
Sbjct: 190 ARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVC 249

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A+L+  +  R++H  + R   F  ++++ NA+V MY K G ++ A  VF  + +KD ISW
Sbjct: 250 AELSALKQGRAIHARV-RATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISW 308

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NT+I+ YA +G + +A+ ++Q M +   + P + T+V +L A SH G +  G+    R+ 
Sbjct: 309 NTIISSYAYHGHSDQALLLYQEM-DLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQ 367

Query: 361 KNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
            +  +   V    C++D+ G+ GR+ +A  +   +P ++++V W +++     HG   + 
Sbjct: 368 DDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRG 427

Query: 419 LNFFRQMLD 427
           +    Q++D
Sbjct: 428 VRAADQVVD 436



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 7/216 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y + GR  +A+D +     T+ L P   TF  V+  C  L     G+ IH  V   
Sbjct: 209 MIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT 268

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ ++ V+ +L+HMY + G  + A  +F  M ++D  SWN +IS Y   G++ +AL + 
Sbjct: 269 NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLY 328

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
            EM L+GV    +T   +L  C+    +  G L + Y ++  H ++ ++     +I++  
Sbjct: 329 QEMDLQGVKPTEVTFVGLLSACSHGGLVADG-LDYFYRMQDDHRIKPSVPHFGCIIDLLG 387

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND 210
           + G +  A  V   M ++ + V W S++ A +   D
Sbjct: 388 RGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGD 423


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/573 (39%), Positives = 347/573 (60%), Gaps = 40/573 (6%)

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T  S+L  CA    +L G  +H ++ K+G E NLFV N+L+++Y K G    A ++F
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D+M+ RDVVSWN++I+ Y  S     A   F  M +         LVS +++++      
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKN-------LVSWSTMISG----- 233

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
                                       YA++G +  A  +FE +P+++V+SWN +I GY
Sbjct: 234 ----------------------------YARVGNLEEARQLFENMPMRNVVSWNAMIAGY 265

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           AQN   ++AIE+F+ M+    + PN  T VS+L A +H+GAL  G  IH  + +N +   
Sbjct: 266 AQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG 325

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           +F+   L DMY KCG + +A  +F+++     + W+ II    ++G  ++A NFF +M++
Sbjct: 326 LFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIE 385

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
           +G+ P+ I+F+ LLTAC+H+GLV +G  YF MM + +GI P ++HYGC+VDL  RAG L 
Sbjct: 386 DGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLD 445

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A + I +MP++P+  +WGALLG CRI+ + E G     R+ E+DS + G  V ++N+YA
Sbjct: 446 QAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYA 505

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
           ++G+ +     R   RD    KTPG S IE+NN V  F+ G+ +HP+  +IY  +R L  
Sbjct: 506 SMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKW 565

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
           KMK  GY P    V+ +++E+EKE  L++HSE+LA+AFG+I++   + I+I KNLRVC D
Sbjct: 566 KMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCND 625

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           CH+  K IS+I EREI+VRD +RFHHFKDG CS
Sbjct: 626 CHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 205/415 (49%), Gaps = 67/415 (16%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           Q  L +   PD YTF  VLKAC  L   ++G+K+HC V K G E ++FV  SL+ +Y + 
Sbjct: 116 QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKV 175

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G   +A+KLFD+M VRD  SWN +ISGYC SG   +A  + D M                
Sbjct: 176 GCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM---------------- 219

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
                                  +E NL   + +I+ YA+ G +  A ++F+ M  R+VV
Sbjct: 220 -----------------------MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVV 256

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           SWN++IA Y Q+     A   F  MQ + G+ P+ +TLVS+ S  A L      + +H F
Sbjct: 257 SWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 316

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           I RR      + +GNA+ DMYAK G +  A  VF  +  +DVISW+ +I G A  G A+E
Sbjct: 317 I-RRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT--- 372
           A   F  M E + + PN  +++ +L A +H G + +G++           FD+       
Sbjct: 376 AFNFFAEMIE-DGLEPNDISFMGLLTACTHAGLVDKGLEY----------FDMMPQVYGI 424

Query: 373 --------CLVDMYGKCGRIDDAMSLFYQVPRSSSV-PWNAIISCHGIHGQGDKA 418
                   C+VD+  + GR+D A SL   +P   +V  W A++    I+   ++ 
Sbjct: 425 TPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERG 479



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 120/270 (44%), Gaps = 25/270 (9%)

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALR 350
           L   ++ ++N L+  ++Q+      I  F   +   N  NP++ T+ S+L A + +  + 
Sbjct: 85  LSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVL 144

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +G K+H  V K     ++FV   LVD+Y K G    A  LF ++     V WN +IS + 
Sbjct: 145 EGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYC 204

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--- 467
             G  DKA   F  M+++ +    +++ ++++  +  G + E ++ F  M     +    
Sbjct: 205 FSGMVDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNA 260

Query: 468 -----PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
                   + Y   ++LF +  H G          + P+     ++L AC   G ++LG 
Sbjct: 261 MIAGYAQNEKYADAIELFRQMQHEG---------GLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 523 VASDRLFEVDSENVGYYV--LMSNIYANVG 550
               R    +   VG ++   ++++YA  G
Sbjct: 312 WIH-RFIRRNKIEVGLFLGNALADMYAKCG 340


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 349/571 (61%), Gaps = 2/571 (0%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           IL +CAR+  ++     H   ++  L+ ++ +SN LIN Y+K G +  A +VFD M+ER 
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +VSWN++I  Y ++     A   F  M+  G +    T+ S+ S      D    + +H 
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHC 188

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
             M+    + ++ +G A++D+YAK G+IN A  VFE +  K  ++W++++ GY Q+    
Sbjct: 189 LSMKTSLDL-NLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYE 247

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+ +++  +  + +  NQ T  S++ A S++ AL +G ++HA + K+    +VFVA+  
Sbjct: 248 EALLLYRRAQRMS-LEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSA 306

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KCG + ++  +F +V   +   WN IIS    H +  + +  F +M  +G+ P+ 
Sbjct: 307 VDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 366

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TF SLL+ C H+GLV EG+R+F +M+  +G+ P++ HY CMVD+ GRAG L  A+  I+
Sbjct: 367 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 426

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
           ++P  P ASIWG+LL +CR+  N+EL  VA+ +LFE++ EN G +VL+SNIYA   +WE 
Sbjct: 427 SIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEE 486

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
           + + R L RD  +KK  G S I++ +KV IF  G  +HP+  +I   L NL  +++  GY
Sbjct: 487 IAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGY 546

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
            P     L DVE  +KE +L  HSE+LA+ FG++  P  S ++I KNLR+C DCH + K 
Sbjct: 547 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKA 606

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            S  T R IIVRD+NRFHHF DG CSCG++W
Sbjct: 607 ASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 210/380 (55%), Gaps = 9/380 (2%)

Query: 34  FPPVLKAC-RN--LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           F  +L+ C RN  +++ K  H   +++  + DV ++  L++ Y + G   +AR++FD M 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R   SWN MI  Y ++    EALDI  EMR EG      T++S+L  C  + + L    
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H   +K  L+ NL+V   L+++YAK GM+  A++VF+ M ++  V+W+S++A Y QS +
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   +   Q+  ++ +  TL S+    + L      + +H  ++R+  F  +V + +
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA-VIRKSGFGSNVFVAS 304

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           + VDMYAK G +  +  +F  +  K++  WNT+I+G+A++    E + +F+ M++ + ++
Sbjct: 305 SAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQ-DGMH 363

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAM 388
           PN+ T+ S+L    H G + +G +   ++++    L  +V   +C+VD+ G+ G + +A 
Sbjct: 364 PNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAY 422

Query: 389 SLFYQVP-RSSSVPWNAIIS 407
            L   +P   ++  W ++++
Sbjct: 423 ELIKSIPFEPTASIWGSLLA 442



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 160/310 (51%), Gaps = 5/310 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKL 57
           MI +Y R    SEA+D F++     G +   +T   VL AC    D    KK+HC  +K 
Sbjct: 135 MIGLYTRNRMESEALDIFWEMR-NEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKT 193

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + +++V  +LL +Y + G+ N A ++F+ M  + S +W++M++GY QS N  EAL + 
Sbjct: 194 SLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLY 253

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              +   +  +  T++S++  C+    ++ G  +H  I K G   N+FV+++ ++MYAK 
Sbjct: 254 RRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKC 313

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R +  +F ++ E+++  WN+II+ + +   P      F  MQQ G+ P+ +T  SL 
Sbjct: 314 GSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLL 373

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+          R     +        +V+  + +VD+  + G+++ A  + + +P +  
Sbjct: 374 SVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPT 433

Query: 298 IS-WNTLITG 306
            S W +L+  
Sbjct: 434 ASIWGSLLAS 443



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 327 NEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
           +E N  Q + ++ IL   +  GA+ +    H + ++  L  DV ++  L++ Y KCG ++
Sbjct: 56  DEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVE 115

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A  +F  +   S V WN +I  +  +    +AL+ F +M +EG +    T  S+L+AC 
Sbjct: 116 LARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG 175

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
            +    E ++  H +  +  +  +L     ++DL+ + G +  A    ++M  +   + W
Sbjct: 176 ANCDALECKK-LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVT-W 233

Query: 506 GALLG 510
            +++ 
Sbjct: 234 SSMVA 238


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 400/718 (55%), Gaps = 18/718 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           +I  Y R G+  E+++ F      + ++ D +T+   L AC     L +GK +H   +  
Sbjct: 84  LIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVLE 143

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    VFV+ SL+ MY R G    AR++FD    RD  SWN+++SGY + G   E L + 
Sbjct: 144 GLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVF 203

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLL--IHLYIVKHGLEFNLFVSNNLINMYA 175
             MR   + ++   + S++  C+  D  + G+   +H  +VK GL+ +LF+++ +++MYA
Sbjct: 204 ALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYA 263

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI------TAHGFFTTMQQAGIQPD 229
           K G +  A+ +F  +++ +VV +N++IA   +    +       A   ++ +Q  G++P 
Sbjct: 264 KRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPT 323

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T  S+        D    + +HG +++   F  D  IG+A++D+Y     +      F
Sbjct: 324 EFTFSSVIRACNLAGDIEFGKQIHGQVLKH-CFQGDDFIGSALIDLYFNSACMEDGFRCF 382

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             +P +DV++W  +I+G  QN L   A+ +F  +     + P+  T  S++ A + +  +
Sbjct: 383 RSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVG-LKPDPFTISSVMNACASLAVV 441

Query: 350 RQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           R G ++     K+   FD F A     + MY + G ++ A+  F ++     V W+AIIS
Sbjct: 442 RTGEQMQCFATKSG--FDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIIS 499

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            H  HG   +AL FF +M+   V P+ ITF+ +LTACSH GLV EG RY+ +M+ E+G+ 
Sbjct: 500 SHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLC 559

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P +KH  C+VDL GRAG L  A  FI++     +  +W +LLG+CRIH +ME G + +DR
Sbjct: 560 PTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADR 619

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           + E+   + G YV + N+Y + G+     ++R L ++RG+KK PG S IE+ + +  F  
Sbjct: 620 IMELQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVA 679

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+++HP+   IY +L  + +K+  L    D S +        +++ +  HSE+LA+A GI
Sbjct: 680 GDKSHPECNAIYTKLAEMLSKIDKL-TTTDTSCIEWVETTGREQNWMNCHSEKLAVALGI 738

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I  P  +PI++ KNLRVC DCH+  K IS+   REII+RD  RFHHF+DG CSCGDYW
Sbjct: 739 IHLPQSAPIRVMKNLRVCRDCHSTMKLISKSECREIILRDVIRFHHFRDGSCSCGDYW 796



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 251/494 (50%), Gaps = 23/494 (4%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDSG 95
           L++C +L     +H  + +      +F+  +LL  YCR G  +   AR+L D+MP R++ 
Sbjct: 20  LRSCASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAV 79

Query: 96  SWNAMISGYCQSGNAVEALD-ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
           S+N +I  Y ++G   E+L+  L   R   V  D  T A+ L  C+R+  +  G ++H  
Sbjct: 80  SFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHAL 139

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            V  GL   +FVSN+L++MYA+ G M  A RVFD   ERD VSWNS+++ Y +       
Sbjct: 140 AVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEM 199

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAV 272
              F  M++  +  +   L S+    +  +      + +VHG +++ G    D+ + +A+
Sbjct: 200 LRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAG-LDTDLFLASAM 258

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA------SEAIEVFQMMEEC 326
           VDMYAK G ++ A A+F+ +   +V+ +N +I G  ++  A       EA+ ++  ++  
Sbjct: 259 VDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQS- 317

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P + T+ S++ A +  G +  G +IH +V+K+C   D F+ + L+D+Y     ++D
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMED 377

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
               F  VP+   V W A+IS    +   ++AL  F ++L  G++PD  T  S++ AC+ 
Sbjct: 378 GFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACAS 437

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMPVRPDA 502
             +V  G++      + F  K     +  M    + ++ R+G++  A    Q M    D 
Sbjct: 438 LAVVRTGEQ-----MQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESH-DV 491

Query: 503 SIWGALLGACRIHG 516
             W A++ +   HG
Sbjct: 492 VSWSAIISSHAQHG 505


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/688 (36%), Positives = 389/688 (56%), Gaps = 23/688 (3%)

Query: 29  PDFYTFPP-------VLKACRNLVDGKKIHCSVL---KLGFEWDVFVAASLLHMYCRFGL 78
           P+  T PP       +   C+ L   K++H  ++      F+     + S L  +  F L
Sbjct: 87  PNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTF-L 145

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
           A  A+ +F  +       +N++I     S   +EAL +   M   G+  D +T   ++  
Sbjct: 146 A-YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C  S     GLL+H ++VK G E + ++ ++LI++YA    +  A ++F+    RDVVSW
Sbjct: 205 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 264

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N++I  Y +  +   A   F  M    +  D+++  ++ +  A +     ++ +   +  
Sbjct: 265 NAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE 320

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
           R     +++  N+++  + K G +  A  +F  +P +DV+SWN+++  YAQ G  +EA+ 
Sbjct: 321 R-----NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 375

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F  M     + P + T VS+L A +H+GAL +G+ +H  +  N +  +  V T LVDMY
Sbjct: 376 LFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMY 434

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG+I  A  +F  +     + WN II+   IHG   +A   F++M + GV P+ ITFV
Sbjct: 435 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFV 494

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           ++L+ACSH+G+V EGQ+    M   +GI+P ++HYGC++DL  RAG L  A   I  MP+
Sbjct: 495 AILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPM 554

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P+ S  GALLG CRIHGN ELG +   RL  +   + G Y+L+SNIYA   KW+   +V
Sbjct: 555 EPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 614

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS-LGYVPD 617
           R+L +  G+ K PG S IE+   V  F  G+ +HP+  KIY++L  +  ++KS +GY  D
Sbjct: 615 RNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSAD 674

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
              VL D+EE++KEH L  HSE+LAIA+G++    K  I+I KNLRVC DCH+  K IS+
Sbjct: 675 TGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISK 734

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  REIIVRD NRFHHF+DG CSC D+W
Sbjct: 735 VYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 197/387 (50%), Gaps = 24/387 (6%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L SGL+PD  T+P V+KAC        G  +H  V+K GFE D ++ +SL+H+Y 
Sbjct: 182 LYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYA 241

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
                  A++LF+    RD  SWNAMI GY +      A  + D M    V  D I+  +
Sbjct: 242 NGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNT 297

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++   A    I+  +     +     E NL   N+++  + K G +  A  +F +M  RD
Sbjct: 298 MINGYA----IVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRD 353

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VVSWNS++A Y Q   P  A   F  M+  G++P   T+VSL S  A L        +H 
Sbjct: 354 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 413

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +I        + I+G A+VDMYAK G I+ A  VF  +  KDV++WNT+I G A +G   
Sbjct: 414 YI-NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVK 472

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT-- 372
           EA ++F+ M+E   + PN  T+V+IL A SH G + +G K     + +C+     +    
Sbjct: 473 EAQQLFKEMKEAG-VEPNDITFVAILSACSHAGMVDEGQK-----LLDCMSSSYGIEPKV 526

Query: 373 ----CLVDMYGKCGRIDDAMSLFYQVP 395
               C++D+  + G +++AM L   +P
Sbjct: 527 EHYGCVIDLLARAGFLEEAMELIGTMP 553


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/671 (37%), Positives = 379/671 (56%), Gaps = 47/671 (7%)

Query: 39  KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMPVRDSGS 96
           K+  +L   K++H   L+ G   D +V+ +L+  Y    F   N A K+F+ +P  +   
Sbjct: 38  KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFV 97

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +N +I G  Q+    +A+    +M +     +  T  ++   C  ++    G+ +H +++
Sbjct: 98  FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K GL  ++ + +  I MY  FG +  A R+  +    DV+ +N++I  Y +  +   A  
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG--NAVVD 274
            F                                          W MED  +G  N +V 
Sbjct: 218 LF------------------------------------------WSMEDKNVGSWNVMVS 235

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
             AK G+I  A  +F  +  K+ ISW+ +I GY + G   EA+EVF +M+   EI P + 
Sbjct: 236 GMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQR-EEIRPRKF 294

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
              S+L A +++GAL QG  IHA V  N   FD  + T LVDMY KCGR+D A  +F ++
Sbjct: 295 VLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKM 354

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            +     WNA+I   G+HG+ + A+  F +M  +  RP+ IT + +L+AC+HSG+V EG 
Sbjct: 355 EKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGL 414

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
           R F+ M+E +GI+P ++HYGC+VDL GRAG LG A   + +MP+ P A++WGALLGACR 
Sbjct: 415 RIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRK 474

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           HG++ELG      L E++ +N G Y L+SNIYA  G+W+ V  VR L ++RG+K + G S
Sbjct: 475 HGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGIS 534

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            I+ +  V  F  G+ +HP+ + IY  L+N+  ++K  G+ P+ S VL D+EE+EKE  L
Sbjct: 535 MIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAEL 594

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
             HSE+LAIAFG+I++ P + I + KNLR+C DCH+  K ISQ+ +REIIVRD  R+HHF
Sbjct: 595 QYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHF 654

Query: 695 KDGICSCGDYW 705
           K G CSC D+W
Sbjct: 655 KTGTCSCKDFW 665



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 162/402 (40%), Gaps = 71/402 (17%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASL 69
           +A+ C+Y+  +    RP+ +T+P + KAC       +G ++H  V+K G   DV + ++ 
Sbjct: 113 KAICCYYKMMIAHA-RPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAG 171

Query: 70  LHMYCRFGLANVARK-------------------------------LFDDMPVRDSGSWN 98
           + MY  FG    AR+                               LF  M  ++ GSWN
Sbjct: 172 IQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN 231

Query: 99  -------------------------------AMISGYCQSGNAVEALDILDEMRLEGVSM 127
                                          AMI GY + G   EAL++ + M+ E +  
Sbjct: 232 VMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRP 291

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
               ++S+L  CA    +  G  IH Y+  +   F+  +   L++MYAK G +  A  VF
Sbjct: 292 RKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVF 351

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           ++M +++V +WN++I           A   F  MQ+   +P+ +TL+ + S  A      
Sbjct: 352 EKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVD 411

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG 306
               +   +         +     VVD+  + G++  A  V   +P++   + W  L+  
Sbjct: 412 EGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGA 471

Query: 307 YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
             ++G       V +++    E+ P N G Y  +   Y+  G
Sbjct: 472 CRKHGDVELGERVGKILL---ELEPQNSGRYALLSNIYARAG 510


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/669 (36%), Positives = 379/669 (56%), Gaps = 8/669 (1%)

Query: 42  RNLVDGKKIHCSVLKL-GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAM 100
           R+ + G+ +H  +L+        F+   L++MY +  L N A+ +      R   +W ++
Sbjct: 21  RSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSL 80

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           ISG   +     AL     MR E V  +  T   +    A     ++G  +H   +K G 
Sbjct: 81  ISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGN 140

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
             ++FV  +  +MY+K G+   A  +FD+M  R++ +WN+ ++   Q    + A   F  
Sbjct: 141 ILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKK 200

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
                 +P+ +T  +  +  A +      R +HGFI+R   + EDV + N ++D Y K G
Sbjct: 201 FLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVR-SRYREDVSVFNGLIDFYGKCG 259

Query: 281 IINSACAVFE--GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            I S+  VF   G   ++V+SW +L+    QN     A  VF  ++   E+ P      S
Sbjct: 260 DIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVF--LQARKEVEPTDFMISS 317

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           +L A + +G L  G  +HA  +K C+  ++FV + LVD+YGKCG I+ A  +F ++P  +
Sbjct: 318 VLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERN 377

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQRY 456
            V WNA+I  +   G  D AL+ F++M     G+   ++T VS+L+ACS +G V  G + 
Sbjct: 378 LVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQI 437

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F  M+  +GI+P  +HY C+VDL GR+G +  A+ FI+ MP+ P  S+WGALLGAC++HG
Sbjct: 438 FESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHG 497

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
             +LG +A+++LFE+D ++ G +V+ SN+ A+ G+WE    VR   RD G+KK  G+S +
Sbjct: 498 KTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWV 557

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
            V N+V +F   +  H K  +I   L  L  +MK  GYVPD +  L D+EE+EK   +  
Sbjct: 558 AVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWY 617

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE++A+AFG+I+ P   PI+I KNLR+C DCH+  KFIS+I  REIIVRD+NRFH FKD
Sbjct: 618 HSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKD 677

Query: 697 GICSCGDYW 705
           G CSC DYW
Sbjct: 678 GWCSCKDYW 686


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/717 (35%), Positives = 398/717 (55%), Gaps = 74/717 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  Y++      A    Y+  L++ L  D YT+P +++AC   R+  + K++H  VLKL
Sbjct: 49  MIRAYIQTNSPHFAFT-LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKL 107

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V  +L++ +        A ++F++  V DS SWN++++GY + GN  EA  I 
Sbjct: 108 GFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIY 167

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M                                        E ++  SN++I ++   
Sbjct: 168 HQMP---------------------------------------ERSIIASNSMIVLFGMR 188

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G++  A ++FD+M+E+D+V+W+++IA ++Q+     A   F  M + G+  D +  VS  
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW------------------------------FMEDVI 267
           S  A L      + +H   ++ G                               ++ D+I
Sbjct: 249 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 308

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
             N+++  Y K  ++++A A+F+ +P KDV+SW+++I+GYAQN L  E + +FQ M+  +
Sbjct: 309 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ-MS 367

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
              P++ T VS++ A + + AL QG  +HA + +N L  +V + T L+DMY KCG ++ A
Sbjct: 368 GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETA 427

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
           + +FY +       WNA+I    ++G  + +L+ F  M    V P+ ITF+ +L AC H 
Sbjct: 428 LEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHM 487

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV EGQ +F+ M  +  I+P++KHYGCMVDL GRAG L  A   +  MP+ PD + WGA
Sbjct: 488 GLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGA 547

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           LLGAC+ HG+ E+G     +L E+  ++ G++VL+SNIYA+ GKW+ V E+R +     +
Sbjct: 548 LLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 607

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
            K PG S IE N  +  F  G++THP  + I D L  +  K+K  GY PD + VL DV+E
Sbjct: 608 LKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDE 667

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           +EKE  L  HSE+LAIAFG+I+  P +PI+I KNLR+C DCH   K IS+   R+I+
Sbjct: 668 EEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/677 (36%), Positives = 383/677 (56%), Gaps = 47/677 (6%)

Query: 34  FPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           F P++ A   L    +IH  +       +  V   L+   C     + A  +F      +
Sbjct: 43  FIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPN 102

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              +NA+I G  ++     ++     M    +  D +T+  +L   A   ++  G  +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD----VVSWNSIIAAYEQSN 209
            ++K GLEF+ FV  +L++MY K G +   L++FD+  +R+    ++ WN +I    +  
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVG 222

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           D   A   F  M +                       RN+ S         W        
Sbjct: 223 DLSKAASLFEAMPE-----------------------RNAGS---------W-------- 242

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNE 328
           N++++ + + G ++ A  +F  +P K+V+SW T+I G++QNG   +A+ +F +M+EE   
Sbjct: 243 NSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEG-- 300

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + PN  T VS L A + +GAL+ G +IH  +  N    +  + T LVDMY KCG I  A 
Sbjct: 301 VRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSAS 360

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F +      + W+ +I    IHG  D+AL  F +M   G+ PD + F+++LTACSHSG
Sbjct: 361 RVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSG 420

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            V +G  +F  M+ ++ I+P +KHY  +VDL GRAG L  A +FIQ+MP+ PD  IWGAL
Sbjct: 421 NVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 480

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
             ACR H N+E+  + +++L +++ ++ G YV +SN+YA VG+WE V+ VR+L ++RG++
Sbjct: 481 FCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVE 540

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PGWS IEV  +V  F  G+  H + E+I  +L  +TA  K  GY+P+ ++VL ++EE+
Sbjct: 541 KDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEE 600

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE  L SHSE+LA+AFG+IS+ P S I+I KNLRVCGDCH+  K+ S+++ REII+RD 
Sbjct: 601 EKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDI 660

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHFKDG CSCGDYW
Sbjct: 661 KRFHHFKDGTCSCGDYW 677



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 178/407 (43%), Gaps = 88/407 (21%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMY-- 73
           +   L   +RPD  T P VLK+   LVD   G+ +H  V+KLG E+D FV  SL+ MY  
Sbjct: 126 FVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVK 185

Query: 74  ---------------------------------CRFGLANVARKLFDDMPVRDSGSWNA- 99
                                            C+ G  + A  LF+ MP R++GSWN+ 
Sbjct: 186 IGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSL 245

Query: 100 ------------------------------MISGYCQSGNAVEALDILDEMRLEGVSMDP 129
                                         MI+G+ Q+G+  +AL +   M  EGV  + 
Sbjct: 246 INGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPND 305

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +TV S L  C +   +  G  IH Y+  +G + N  +   L++MYAK G ++ A RVF +
Sbjct: 306 LTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVE 365

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
              +D+++W+ +I  +        A   F  M+ AGI PD +  +++      L  C +S
Sbjct: 366 TKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI------LTACSHS 419

Query: 250 RSVHGFI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK-DVISWNT 302
            +V   +     MR  + +E  +     +VD+  + G ++ A +  + +P+  D + W  
Sbjct: 420 GNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGA 479

Query: 303 LITGYAQNGLASEAIEVFQMM-EECNEINPNQ-GTYVSILPAYSHVG 347
           L         A + IE+ ++  E+  ++ P   G+YV +   Y+ VG
Sbjct: 480 LFCACR----AHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVG 522



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ + + G   +A+  F++  L  G+RP+  T    L AC     L  G++IH  +   
Sbjct: 276 MINGFSQNGDHEKALSMFWRM-LEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSN 334

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +  +  +L+ MY + G    A ++F +   +D  +W+ MI G+   G   +AL   
Sbjct: 335 GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCF 394

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M+  G++ D +   +IL  C+ S N+  GL       + + +E  +     ++++  +
Sbjct: 395 VKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGR 454

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  AL     M +  D V W ++  A
Sbjct: 455 AGRLDEALSFIQSMPINPDFVIWGALFCA 483



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 14/251 (5%)

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P++      +P       L Q  +IHA++  + L  +  V T L+        +D A+S+
Sbjct: 35  PSRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSI 94

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F      +   +NA+I     + + + +++ F  ML   +RPD +T   +L +   + LV
Sbjct: 95  FRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV--AALV 152

Query: 451 SEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS---IWG 506
             G  R  H    + G++        +VD++ + G LG         P R  A    +W 
Sbjct: 153 DVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN 212

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
            L+  C   G++   A     LFE   E N G +  + N +   G    +D  R L    
Sbjct: 213 VLINGCCKVGDLSKAA----SLFEAMPERNAGSWNSLINGFVRNGD---LDRARELFVQM 265

Query: 566 GLKKTPGWSSI 576
             K    W+++
Sbjct: 266 PEKNVVSWTTM 276


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/651 (38%), Positives = 360/651 (55%), Gaps = 62/651 (9%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +V  +  L+  Y R G  + A ++F+DM V+ + +WN++++ + +     E    L E  
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-------NLFVSNNLINMY 174
            +     P TV         S NI+     H   V     F       ++   N +I+  
Sbjct: 100 PQ-----PNTV---------SYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISAL 145

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           A+ G+M  A R+F  M E++ VSW+++++ Y    D   A   F                
Sbjct: 146 AQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAP------------ 193

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
                                       M  VI   A++  Y K G +  A  +F+ + +
Sbjct: 194 ----------------------------MRSVITWTAMITGYMKFGRVELAERLFQEMSM 225

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           + +++WN +I GY +NG A + + +F+ M E   + PN  +  S+L   S++ AL+ G +
Sbjct: 226 RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG-VKPNALSLTSVLLGCSNLSALQLGKQ 284

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           +H  V K  L  D    T LV MY KCG + DA  LF Q+PR   V WNA+IS +  HG 
Sbjct: 285 VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGA 344

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G KAL  F +M  EG++PD ITFV++L AC+H+GLV  G +YF+ M+ +FGI+   +HY 
Sbjct: 345 GKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYA 404

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GRAG L  A + I++MP +P  +I+G LLGACRIH N+ L   A+  L E+D  
Sbjct: 405 CMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPT 464

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
               YV ++N+YA   +W+ V  +R   +D  + K PG+S IE+N+ V  F + +R HP+
Sbjct: 465 IATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPE 524

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I+++L++L  KMK  GYVPD  FVL DV E+ KE +L  HSE+LAIAFG++  P   
Sbjct: 525 LASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGV 584

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI++FKNLRVCGDCH+ TK+IS I  REIIVRD+ RFHHFKDG CSC DYW
Sbjct: 585 PIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 36/406 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-----GLRPDFYTFPPVLKACRNLVDGKKIHCSVL 55
           +I+ YVRCG +  AV  F    + S      +   F   P   +  R L +      +V 
Sbjct: 47  LIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTV- 105

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
                +++ +A    H+    G+ + AR  FD MP++D  SWN MIS   Q G   EA  
Sbjct: 106 ----SYNIMLACHWHHL----GVHD-ARGFFDSMPLKDVASWNTMISALAQVGLMGEARR 156

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   M  E   +    + S    C   D  +                ++     +I  Y 
Sbjct: 157 LFSAMP-EKNCVSWSAMVSGYVACGDLDAAVECFYA-------APMRSVITWTAMITGYM 208

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           KFG +  A R+F +M  R +V+WN++IA Y ++         F TM + G++P+ L+L S
Sbjct: 209 KFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTS 268

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    + L+  +  + VH  + +      D   G ++V MY+K G +  A  +F  +P K
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCP-LSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK 327

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV+ WN +I+GYAQ+G   +A+ +F  M++   + P+  T+V++L A +H G +  G++ 
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFDEMKK-EGLKPDWITFVAVLLACNHAGLVDLGVQY 386

Query: 356 HARVIKNCLCFDVFVAT------CLVDMYGKCGRIDDAMSLFYQVP 395
                 N +  D  + T      C+VD+ G+ G++ +A+ L   +P
Sbjct: 387 F-----NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMP 427


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/705 (35%), Positives = 386/705 (54%), Gaps = 8/705 (1%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSV----LKLGFE 60
           Y   G   EA++ F +     G   + +    +LK    + D   + C +     KLG +
Sbjct: 123 YALRGEFEEALELFRRLQ-REGHEVNHFVLTTILKVLVTM-DAPGLACGIHACACKLGHD 180

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            + FV  +L+  Y   G    AR +FD +  +D+ +W AM+S Y ++     AL+   +M
Sbjct: 181 RNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKM 240

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R+ G   +P  + S L       + L G  IH   VK   +    V   L++MYAK G +
Sbjct: 241 RMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDI 300

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +F+ +   DV+ W+ +I+ Y QS     A   F  M ++ + P+  +L  +    
Sbjct: 301 EDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQAC 360

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A +        +H   ++ G+  E + +GNA++DMYAK   + ++  +F  L   + +SW
Sbjct: 361 ANIAFLELGEQIHNLAIKLGYESE-LFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSW 419

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           NT+I GY Q+G A +A+ VF  M   + ++  Q T+ S+L A ++  +++  ++IH+ + 
Sbjct: 420 NTIIVGYCQSGFAEDALSVFHEMRAAHMLS-TQVTFSSVLRACANTSSIKHAVQIHSLIE 478

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K+    D  V   L+D Y KCG I DA+ +F  +     V WN+IIS + +HG+   AL 
Sbjct: 479 KSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALE 538

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M    ++ + +TFVSLL+ C  +GLV++G   F+ M  +  IKP ++HY C+V L 
Sbjct: 539 LFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLL 598

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG L  A  FI ++P  P   +W ALL +C +H N+ LG  A++++ +++  +   YV
Sbjct: 599 GRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYV 658

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           L+SN+YA  G  + V   R   R+ G+KK  G S +E+  +V  F  G+  HP    I  
Sbjct: 659 LLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINA 718

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            L  L  K    GYVPD + VL DV+E+EK  +L  HSERLA+A+G+  +PP  PI+I K
Sbjct: 719 MLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMK 778

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLR C DCH   K IS+I +REIIVRD NRFHHF++GICSCGDYW
Sbjct: 779 NLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 258/523 (49%), Gaps = 11/523 (2%)

Query: 28  RPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG--FEWDVFVAASLLHMYCRFGLANVA 82
           + D Y     L+ C    D   G+ +H  V++ G   + D F A  LL+ Y + G    A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R+LFD MP R+  S+  ++ GY   G   EAL++   ++ EG  ++   + +IL V    
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           D       IH    K G + N FV   LI+ Y+  G + HA  VFD ++ +D V+W +++
Sbjct: 162 DAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           + Y +++ P  A   F+ M+  G +P+   L S       L+     + +HG  ++  + 
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYD 281

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            E   +G A++DMYAK G I  A A+FE +P  DVI W+ LI+ YAQ+    +A E+F  
Sbjct: 282 TEPH-VGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLR 340

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M   + + PN+ +   +L A +++  L  G +IH   IK     ++FV   L+DMY KC 
Sbjct: 341 MMR-SFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCR 399

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            +++++ +F  +  ++ V WN II  +   G  + AL+ F +M    +    +TF S+L 
Sbjct: 400 NMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLR 459

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           AC+++  +    +  H + E+            ++D + + G +  A    +++ V  D 
Sbjct: 460 ACANTSSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDV 517

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLMS 543
             W +++ A  +HG         DR+ + D  + +V +  L+S
Sbjct: 518 VSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLS 560



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 227/463 (49%), Gaps = 21/463 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+S Y        A++ F +  +T G +P+ +     LKA   L     GK IH   +K 
Sbjct: 220 MVSCYSENDIPEYALNTFSKMRMT-GFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKT 278

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            ++ +  V  +LL MY + G    A  +F+ +P  D   W+ +IS Y QS    +A ++ 
Sbjct: 279 LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMF 338

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V  +  +++ +L  CA    +  G  IH   +K G E  LFV N L++MYAK 
Sbjct: 339 LRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKC 398

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M ++L +F  + + + VSWN+II  Y QS     A   F  M+ A +    +T  S+ 
Sbjct: 399 RNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVL 458

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A  +  +++  +H  I  +  F  D I+ N+++D YAK G I  A  VFE +   DV
Sbjct: 459 RACANTSSIKHAVQIHSLI-EKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDV 517

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++I+ YA +G A+ A+E+F  M + ++I  N  T+VS+L      G + QG+ +  
Sbjct: 518 VSWNSIISAYALHGRATNALELFDRMNK-SDIKANDVTFVSLLSVCGSTGLVNQGLWLF- 575

Query: 358 RVIKNCLCFDVFVA------TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHG 410
               N +  D  +       TC+V + G+ GR+ DA+     +P + S + W A++S   
Sbjct: 576 ----NSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCV 631

Query: 411 IHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSE 452
           +H           ++LD  + P D  T+V L    + +G++ E
Sbjct: 632 VHKNVALGRYAAEKVLD--IEPHDETTYVLLSNMYAAAGILDE 672


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 350/603 (58%), Gaps = 35/603 (5%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  CAR  +   G  +H +I+K G++    +SNNLINMY K G+++ AL +F+Q+  RD 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 196 VSWNSIIAAYEQSNDP-ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +SW SI+ A  Q+N P +T   F    +Q G+QPD      L    A L   +  + VH 
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 255 -FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            FI+      +D ++ +++VDMYAK G+ +    VF+ +  K+ ISW  +I+GYAQ+G  
Sbjct: 130 TFIVSP--VSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRK 187

Query: 314 SEAIEVFQMMEECNEIN--------PNQGTYV-----------------------SILPA 342
            +AI++FQ M   N ++           G +V                       SI+ A
Sbjct: 188 LDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGA 247

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            +++  L  G +IH  VI       +FV+  LVDMY KC  +  A  +F ++ +   V W
Sbjct: 248 SANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSW 307

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            +II     HG  ++AL+ + +ML  G++P+ +TFV L+ ACSH GLVS+G+ +F+ M +
Sbjct: 308 TSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIK 367

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           ++GI P L+HY C++DL  R+GHL  A N I+ MP +PD + W ALL AC  H N  +G 
Sbjct: 368 DYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGI 427

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             +D L  +  E+   Y+L+SNIYA+   WE V +VR L     +KK PG+S I +  + 
Sbjct: 428 RVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKES 487

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
            +F  G  +HP  E+I+  L  L A+MK  GY+PD S VL D+E+ EKE  L  HSERLA
Sbjct: 488 QVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLA 547

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +A+G++   P   + I KNLRVCGDCH   KFIS I +REI+VRD+NR+HHFKDG CSC 
Sbjct: 548 VAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCN 607

Query: 703 DYW 705
           ++W
Sbjct: 608 NFW 610



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 190/396 (47%), Gaps = 37/396 (9%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GKK+HC ++K G +    ++ +L++MY + GL   A  LF+ +P RD  SW ++++   Q
Sbjct: 22  GKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQ 81

Query: 107 SGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +      L +   M + +G+  D    A ++  CA    +  G  +H   +   +  +  
Sbjct: 82  ANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDV 141

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT----- 220
           V ++L++MYAK G+      VFD +  ++ +SW ++I+ Y QS   + A   F       
Sbjct: 142 VKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKN 201

Query: 221 --------------------------MQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVH 253
                                     M+  GI   D   L S+    A L      + +H
Sbjct: 202 LLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIH 261

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             ++  G +   + + NA+VDMYAK   + +A  +F  +  +D++SW ++I G AQ+GLA
Sbjct: 262 CLVILLG-YESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLA 320

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVAT 372
            EA+ ++  M     + PN+ T+V ++ A SHVG + +G      +IK+  +   +   T
Sbjct: 321 EEALSLYNRMLSTG-LKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYT 379

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           CL+D+  + G +++A +L   +P +     W A++S
Sbjct: 380 CLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLS 415



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 169/373 (45%), Gaps = 67/373 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQF-----------------------TLT--------SGLRP 29
           +I++Y +CG + +A++ F Q                        TL+         GL+P
Sbjct: 44  LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQP 103

Query: 30  DFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D Y F  ++KAC  L     GK++H + +      D  V +SL+ MY + GL ++ R +F
Sbjct: 104 DHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVF 163

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILD---------------------------- 118
           D +  ++S SW AMISGY QSG  ++A+ +                              
Sbjct: 164 DSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFY 223

Query: 119 ---EMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
              EMR +G+ + DP  ++SI+   A    +  G  IH  ++  G E +LFVSN L++MY
Sbjct: 224 LFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMY 283

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           AK   +  A ++F +M++RD+VSW SII    Q      A   +  M   G++P+ +T V
Sbjct: 284 AKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFV 343

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            L    + +      R     +++       +     ++D+ ++ G +  A  + + +P 
Sbjct: 344 GLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPF 403

Query: 295 K-DVISWNTLITG 306
           K D  +W  L++ 
Sbjct: 404 KPDEATWAALLSA 416



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 237 TSIVAQLNDCRNSRS------VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           + +V QL  C   +S      +H  I++ G   +   + N +++MY K G+I  A  +F 
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTG-IDQCKSLSNNLINMYGKCGLIQDALNLFN 62

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            LP +D ISW +++T   Q  L    + +F  M + + + P+   +  ++ A + +GA++
Sbjct: 63  QLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMK 122

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           QG ++HA  I + +  D  V + LVDMY KCG  D    +F  +   +S+ W A+IS + 
Sbjct: 123 QGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYA 182

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             G+   A+  F++M  + +    +++ +L++    SG
Sbjct: 183 QSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSG 216


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/669 (35%), Positives = 393/669 (58%), Gaps = 9/669 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEW---DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           +NL  G+ IH  +      +    V    SL+++Y +    ++ARKLFD MP R+  SW+
Sbjct: 33  KNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWS 92

Query: 99  AMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           A+++GY Q+GN +E  ++  +M + + +  +   +A+ +  C  S   + G   H Y +K
Sbjct: 93  ALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC-DSQMYVEGKQCHGYALK 151

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GLEF+ +V N LI +Y+K   +  A+++   +   D+  +N ++    Q      A   
Sbjct: 152 SGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDV 211

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
              +   GI+ +  T V++  + A L D    + VH  +++      DV IG++++DMY 
Sbjct: 212 LKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSD-IDCDVYIGSSIIDMYG 270

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME-ECNEINPNQGTY 336
           K G + S    F+ L  ++V+SW ++I  Y QN    EA+ +F  ME +C  I PN+ T 
Sbjct: 271 KCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDC--IPPNEYTM 328

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
             +  + + + AL  G ++HAR  K+ L  +V V   L+ MY K G I  A S+F  +  
Sbjct: 329 AVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTC 388

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
            + + WNAII+ H  HG G +AL+ F+ M+  G RP+++TF+ ++ AC+H  LV EG  Y
Sbjct: 389 CNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYY 448

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F+ + ++F I P L+HY C+V L  R+G L  A NF+++  +  D   W  LL AC +H 
Sbjct: 449 FNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHK 508

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           + + G   ++ L +++  +VG Y+L+SN++A V +W+ V E+R L R+R +KK PG S +
Sbjct: 509 HYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWL 568

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           E+ N   +F + +  HP+   IY+ +++L +K++ LGYVPD   VL D+E+++K   L+ 
Sbjct: 569 EIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSY 628

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LA+A+G++ +P  +PI + KNLR+C DCH   K IS++  R I+VRD+NRFHHF++
Sbjct: 629 HSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQN 688

Query: 697 GICSCGDYW 705
           G CSCGDYW
Sbjct: 689 GCCSCGDYW 697


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/655 (37%), Positives = 380/655 (58%), Gaps = 13/655 (1%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E +VF    ++  Y +    ++AR+LFD+ P  D+ S+N +ISGY  +   V A+ +   
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKR 130

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR  G  +D  T++ ++  C    +++  L  H + V  G +    V+N  +  Y+K G+
Sbjct: 131 MRELGFEVDGFTLSGLIAACCDRVDLIKQL--HCFAVSGGFDSYSSVNNAFVTYYSKGGL 188

Query: 180 MRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
           +R A+ VF  M   RD VSWNS+I AY Q  +   A   +  M   G + D+ TL S+ +
Sbjct: 189 LREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI---INSACAVFEGLPVK 295
            +  L+     R  HG +++ G F ++  +G+ ++D Y+K G    ++ +  VF+ +   
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAG-FHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP 307

Query: 296 DVISWNTLITGYAQNGLASE-AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           D++ WNT+I+GY+ N   SE A++ F+ M+      P+  ++V +  A S++ +  QG +
Sbjct: 308 DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGH-RPDDCSFVCVTSACSNLSSPSQGKQ 366

Query: 355 IHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           IH   IK N     + V   L+ +Y K G + DA  +F ++P  ++V +N +I  +  HG
Sbjct: 367 IHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHG 426

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G +AL  +++MLD G+ P++ITFV++L+AC+H G V EGQ+YF+ M+E F I+P  +HY
Sbjct: 427 HGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHY 486

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            CM+DL GRAG L  A  FI  MP +P +  W ALLGACR H NM L   A+  L  +  
Sbjct: 487 SCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQP 546

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
                YV+++N+YA+ GKWE +  VR   R + ++K PG S IEV  K  +F   + +HP
Sbjct: 547 LAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHP 606

Query: 594 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI---LTSHSERLAIAFGIISS 650
              ++ + L  +  KMK +GYV DK + +   +E  +      L  HSE+LA+AFG++S+
Sbjct: 607 MIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMST 666

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
                I + KNLR+CGDCHN  KF+S +  REIIVRD+ RFH FKDG CSCGDYW
Sbjct: 667 RDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 206/393 (52%), Gaps = 17/393 (4%)

Query: 26  GLRPDFYTFPPVLKACRNLVDG-KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 84
           G   D +T   ++ AC + VD  K++HC  +  GF+    V  + +  Y + GL   A  
Sbjct: 135 GFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVS 194

Query: 85  LFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           +F  M  +RD  SWN+MI  Y Q     +AL +  EM  +G  +D  T+AS+L      D
Sbjct: 195 VFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLD 254

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG---MMRHALRVFDQMMERDVVSWNS 200
           +++ G   H  ++K G   N  V + LI+ Y+K G    M  + +VF +++  D+V WN+
Sbjct: 255 HLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNT 314

Query: 201 IIAAY----EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +I+ Y    E S + + +   F  MQ+ G +PD  + V +TS  + L+     + +HG  
Sbjct: 315 MISGYSMNEEHSEEAVKS---FRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLA 371

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           ++       + + NA++ +Y K G +  A  VF+ +P  + +S+N +I GYAQ+G  +EA
Sbjct: 372 IKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEA 431

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCL 374
           + ++Q M +   I PN  T+V+IL A +H G + +G K +   +K     +      +C+
Sbjct: 432 LRLYQRMLDSG-IAPNNITFVAILSACAHCGKVDEGQK-YFNTMKETFKIEPEAEHYSCM 489

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
           +D+ G+ G++++A      +P +  SV W A++
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 216/486 (44%), Gaps = 78/486 (16%)

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH--------------------- 182
           ++ +G  +H   VK  +  + ++SN+ +N+Y+K G + +                     
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVK 82

Query: 183 ----------ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
                     A ++FD+  + D VS+N++I+ Y  + + + A   F  M++ G + D  T
Sbjct: 83  AYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFT 142

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           L  L  I A  +     + +H F +  G F     + NA V  Y+K G++  A +VF G+
Sbjct: 143 LSGL--IAACCDRVDLIKQLHCFAV-SGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 293 P-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
             ++D +SWN++I  Y Q+   ++A+ +++ M        +  T  S+L A + +  L  
Sbjct: 200 DGLRDEVSWNSMIVAYGQHKEGAKALALYKEM-IFKGFKIDMFTLASVLNALTSLDHLIG 258

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID---DAMSLFYQVPRSSSVPWNAIISC 408
           G + H ++IK     +  V + L+D Y KCG  D   D+  +F ++     V WN +IS 
Sbjct: 259 GRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISG 318

Query: 409 HGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM-------- 459
           + ++ +  ++A+  FRQM   G RPD  +FV + +ACS+    S+G++   +        
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS 378

Query: 460 ---------------------MQEEFGIKPHLK--HYGCMVDLFGRAGHLGMAHNFIQNM 496
                                 +  F   P L    + CM+  + + GH   A    Q M
Sbjct: 379 NRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRM 438

Query: 497 ---PVRPDASIWGALLGACRIHGNMELGAVASDRL---FEVDSENVGYYVLMSNIYANVG 550
               + P+   + A+L AC   G ++ G    + +   F+++ E   +Y  M ++    G
Sbjct: 439 LDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPE-AEHYSCMIDLLGRAG 497

Query: 551 KWEGVD 556
           K E  +
Sbjct: 498 KLEEAE 503


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/616 (38%), Positives = 357/616 (57%), Gaps = 46/616 (7%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLY 154
           +N +I     S    +AL +   MR  G +  P   T    L  C+ S ++L GL IH  
Sbjct: 89  FNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSA 148

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS---NDP 211
           + K  L+ N++V+++ I+MY++ G    A RVFD M  RDVVSWN++IA + +    +  
Sbjct: 149 VAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRA 208

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIV--AQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           I     F  +Q  G  PD  T+  +   +  A+ +D R       F+ R           
Sbjct: 209 IEVFKQFVVLQ--GSMPDAGTMAGILPAMGNAKPDDIR-------FVRR----------- 248

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
                             VF+ +  K++ISWN ++  YA N    +A+E+F +ME+ +E+
Sbjct: 249 ------------------VFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEK-DEV 289

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  ++LP    + A   G +IH  + +  +C ++ +   L+DMY  CG + DA  
Sbjct: 290 EPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDARE 349

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     + W +IIS +G HG G +A++ F +ML +G+ PD I FV++L ACSH+GL
Sbjct: 350 IFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGL 409

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           +++G+ YF  M   + I P  +HY CMVDL GRAG +  A++FI  M + P+  +WGALL
Sbjct: 410 LADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALL 469

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            ACRIH NM++G VA+D LF +  E  GYYVL+SN+YA  G+W  V  VRS+  ++G+KK
Sbjct: 470 QACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKK 529

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S +E+ ++V  F+ G+R HP+ E IY +L  L  K++ +GY P+    L DVEE++
Sbjct: 530 FPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEED 589

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE  L+ HSE+LAIAF ++++ P + I++  NLR C DCH   K IS IT REI+++D+N
Sbjct: 590 KEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTN 649

Query: 690 RFHHFKDGICSCGDYW 705
           R HH   G+CSCGDYW
Sbjct: 650 RIHHIVQGVCSCGDYW 665



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 55/404 (13%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD YT+P  LK+C   ++L+ G +IH +V KL  + +V+VA S + MY R G    A ++
Sbjct: 121 PDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRV 180

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE-MRLEGVSMDPITVASILPVC--ARS 142
           FD MP RD  SWNAMI+G+ + G    A+++  + + L+G   D  T+A ILP    A+ 
Sbjct: 181 FDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKP 240

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           D+I                                   R   RVFD M  ++++SWN+++
Sbjct: 241 DDI-----------------------------------RFVRRVFDNMQFKELISWNAML 265

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y  +   + A   F  M++  ++PD +TL ++     +L+     + +H  I R+   
Sbjct: 266 AVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKN-M 324

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             ++++ NA++DMYA  G +  A  +F+ +  +DVISW ++I+ Y ++G   EA+++F+ 
Sbjct: 325 CPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEK 384

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQG------IKIHARVIKNCLCFDVFVATCLVD 376
           M     + P+   +V++L A SH G L  G      +     +I     +     TC+VD
Sbjct: 385 MLG-QGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHY-----TCMVD 438

Query: 377 MYGKCGRIDDAMSLFYQ-VPRSSSVPWNAIISCHGIHGQGDKAL 419
           + G+ G I++A       +   +   W A++    IH   D  L
Sbjct: 439 LLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGL 482


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/539 (41%), Positives = 321/539 (59%), Gaps = 33/539 (6%)

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WNS + A  + + PI A   F  ++Q  + PD  T  S+      L D  N R +HG + 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN---------------- 301
           + G F  ++ + N +V +YA  G +  A  +FE +P +DV++WN                
Sbjct: 156 KVG-FRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214

Query: 302 ---------------TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
                          ++I GY Q G A EAI +F  MEE   +  N+ T V++L A + +
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADL 273

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL  G++IH    ++    +V ++  L+DMY KCG +++A  +F ++   + V W+A+I
Sbjct: 274 GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMI 333

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
               +HG+ ++AL  F  M   G+ P+ +TF+ LL ACSH GL+SEG+R+F  M  ++GI
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HYGCMVDL  RAG L  AH FI NMP++P+  +WGALLGACR+H N+E+   A  
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L E+D  N GYYV++SNIYA  G+WE    VR   +DR +KKTPGWSSI V+  V  F 
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G  +HP  E+I+     L  +M+  GYVP+ S VL D+EE EK   ++ HSE+LA+ FG
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFG 573

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++++P ++PI+I KNLR+C DCH+  K IS I  REI+VRD NRFH F D  CSC DYW
Sbjct: 574 LMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 206/457 (45%), Gaps = 49/457 (10%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN+ +    +  + ++A+ +   +R   V  D  T +S+L  C    ++ +G ++H  + 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN----------------- 199
           K G   NL++ N ++++YA  G M  A  +F++M +RDVV+WN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 200 --------------SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
                         S+IA Y Q      A   F  M++AG++ + +T+V++ +  A L  
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
                 +H +  R G F  +V I N ++DMY K G +  AC VFE +  + V+SW+ +I 
Sbjct: 276 LDLGMRIHEYSNRHG-FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-L 364
           G A +G A EA+ +F  M +   I PN  T++ +L A SH+G + +G +  A + ++  +
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVG-IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFR 423
              +    C+VD+  + G + +A      +P + + V W A++    +H   + A    +
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            +L+     D   +V L    + +G   +  R    M++   +K         VD     
Sbjct: 454 HLLELDPLNDGY-YVVLSNIYAEAGRWEDTARVRKFMKDR-QVKKTPGWSSITVD----- 506

Query: 484 GHLGMAHNFIQNMPVRPDASI----WGALLGACRIHG 516
              G+ H F+      PD       W  LL   R+ G
Sbjct: 507 ---GVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKG 540



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 45/358 (12%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T   VL+AC NL+D   G+ +H  V K+GF  ++++   ++H+Y   G    AR L
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 86  FDDMPVRDSGSWN-------------------------------AMISGYCQSGNAVEAL 114
           F+ MP RD  +WN                               +MI+GY Q G A EA+
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +  +M   GV  + +TV ++L  CA    +  G+ IH Y  +HG + N+ +SN LI+MY
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 305

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G +  A +VF++M ER VVSW+++I           A   F+ M Q GI+P+ +T +
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFI 365

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            L    + +      R     + R    +  +     +VD+ ++ G+++ A      +P+
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM 425

Query: 295 K-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
           K + + W  L+     +    +A EAI+         E++P N G YV +   Y+  G
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMAEEAIKHLL------ELDPLNDGYYVVLSNIYAEAG 477



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKL 57
           MI+ YV+CG+  EA+  F +    +G++ +  T   VL AC +L  +D G +IH    + 
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH 289

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V ++ +L+ MY + G    A K+F++M  R   SW+AMI G    G A EAL + 
Sbjct: 290 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
            +M   G+  + +T   +L  C+    I  G      + + +G+   +     ++++ ++
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409

Query: 177 FGMMRHALR-VFDQMMERDVVSWNSIIAA 204
            G++  A   + +  M+ + V W +++ A
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGA 438


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/681 (36%), Positives = 381/681 (55%), Gaps = 57/681 (8%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA---NVARKLFD--DMPVR 92
           L+ C+ L   K++HC + K G +        L++           + ARK F+     VR
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 93  DSGSW---NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
              +    N++I GY  +G   EA+ +   M + GV+ +  T   +L  C +      G+
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H  +VK GLE ++F+ N LI+ YA+ G M H  +VF+ M ER+VVSW S+I  Y + +
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
            P  A   F  M                     LN                      ++ 
Sbjct: 212 RPKEAVSLFFEM---------------------LNK---------------------VMV 229

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           NA+VDMY K G I++A  +F+    ++++ +NT+++ YA+ GLA EA+ +   M +    
Sbjct: 230 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ-QGP 288

Query: 330 NPNQGTYVSILPAYSHV-----GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
            P++ T +S + A + +     G +  G  +H  + KN +  D+ + T LVDM+ +CG  
Sbjct: 289 RPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDP 348

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
             AM +F ++       W A I    + G G+ A   F QML +GV+PD + FV +LTAC
Sbjct: 349 QSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTAC 408

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SH G V +G   F +M E+ GI P ++HYGCMVDL GRAG L  A + I++MP+ P+  +
Sbjct: 409 SHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV 467

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WG+LL ACR+H N+E+   A++R+ E+  +  G +VL+SNIYA+ GKW  V  VR   R+
Sbjct: 468 WGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLRE 527

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G++K PG SS++VN  +  F +G+ +HP+   I   L+ +  +    G++PD S VL D
Sbjct: 528 KGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLD 587

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           V+E EKE++L+ HSE+LAIAFG+I++    PI++ KNLR+C DCH++ K  S I  REII
Sbjct: 588 VDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREII 647

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD+NRFH F+ G+CSC DYW
Sbjct: 648 VRDNNRFHFFRQGLCSCCDYW 668


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/650 (36%), Positives = 373/650 (57%), Gaps = 8/650 (1%)

Query: 62   DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
            ++  +  L+ MYC+     +A K+FD MP R+  SW A++SG+  +G+   +L +  EM 
Sbjct: 403  NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 122  LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             +G+  +  T ++ L  C   + +  GL IH + +K G E  + V N+L++MY+K G + 
Sbjct: 463  RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 182  HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ--PDLLTLVSLTSI 239
             A +VF  M+ R ++SWN++IA Y  +     A   F  MQ+A I+  PD  TL SL   
Sbjct: 523  EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 240  VAQLNDCRNSRSVHGFIMRRGWFM-EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             +        + +HGF++R G+       I  ++VD+Y K G + SA   F+ +  K +I
Sbjct: 583  CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMI 642

Query: 299  SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            SW++LI GYAQ G   EA+ +F+ ++E +    +     SI+  ++    L+QG ++ A 
Sbjct: 643  SWSSLILGYAQEGDFVEAMGLFKRLQELSS-QIDSFVLSSIIGVFADFALLQQGKQMQAL 701

Query: 359  VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            V+K     +  V+  LVDMY KCG +D+A   F ++     + W  +I+ +G HG G KA
Sbjct: 702  VVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKA 761

Query: 419  LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
            ++ F +ML   + PD + ++++L+ACSHSG++ EG+  F  + E  GIKP ++HY C+VD
Sbjct: 762  VSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVD 821

Query: 479  LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
            L GRAG L  A + +  MP++P+  IW  LL  CR+HG++ELG      L  +D +N   
Sbjct: 822  LLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPAN 881

Query: 539  YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
            YV+MSN+Y   G W      R L   +GL+K  G S +E+  +V  F +G  +HP    I
Sbjct: 882  YVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVI 941

Query: 599  YDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS---SPPKS 654
             + L+ +  +++  LGYV      L D++++ KE  L +HSE+LAI   + +   +    
Sbjct: 942  QETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGK 1001

Query: 655  PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
             I++FKNLRVC DCH + K +S+IT+   +VRD+ RFH F+DG CSCGDY
Sbjct: 1002 TIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 227/422 (53%), Gaps = 12/422 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++S +V  G L+ ++  F +     G+ P+ +TF   LKAC     L  G +IH   LK+
Sbjct: 441 LMSGHVLNGDLNGSLSLFTEMG-RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKI 499

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE  V V  SL+ MY + G  N A K+F  M  R   SWNAMI+GY  +G    AL   
Sbjct: 500 GFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATF 559

Query: 118 DEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLE--FNLFVSNNLINM 173
             M+   +   P   T+ S+L  C+ +  I +G  IH ++V+ G     +  ++ +L+++
Sbjct: 560 GMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDL 619

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
           Y K G +  A + FDQ+ E+ ++SW+S+I  Y Q  D + A G F  +Q+   Q D   L
Sbjct: 620 YVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVL 679

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293
            S+  + A     +  + +   +++    +E   + N++VDMY K G+++ A   F  + 
Sbjct: 680 SSIIGVFADFALLQQGKQMQALVVKLPSGLE-TSVSNSLVDMYLKCGLVDEAEKCFAEMQ 738

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           +KDVISW  +ITGY ++GL  +A+ +F  M   N I P++  Y+++L A SH G +++G 
Sbjct: 739 LKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHN-IEPDEVCYLAVLSACSHSGMIKEGE 797

Query: 354 KIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGI 411
           ++ +++++   +   V    C+VD+ G+ GR+ +A  L   +P   +V  W  ++S   +
Sbjct: 798 ELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRV 857

Query: 412 HG 413
           HG
Sbjct: 858 HG 859



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 208/462 (45%), Gaps = 53/462 (11%)

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
           G   NL  SN LI+MY K      A +VFD M ER+VVSW ++++ +  + D   +   F
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
           T M + GI P+  T  +       LN       +HGF ++ G+ M  V +GN++VDMY+K
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-VEVGNSLVDMYSK 517

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN-EINPNQGTYV 337
            G IN A  VF  +  + +ISWN +I GY   G  S A+  F MM+E   +  P++ T  
Sbjct: 518 CGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLT 577

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCL-C-FDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           S+L A S  G +  G +IH  ++++   C     +   LVD+Y KCG +  A   F Q+ 
Sbjct: 578 SLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK 637

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL-------------- 441
             + + W+++I  +   G   +A+  F+++ +   + D     S++              
Sbjct: 638 EKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQ 697

Query: 442 -------------TACSHS--------GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
                        T+ S+S        GLV E ++ F  MQ +  I      +  M+  +
Sbjct: 698 MQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVIS-----WTVMITGY 752

Query: 481 GRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD--SEN 535
           G+ G    A +    M    + PD   + A+L AC   G ++ G     +L E       
Sbjct: 753 GKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPR 812

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG-WSSI 576
           V +Y  + ++    G+   + E + L     +K   G W ++
Sbjct: 813 VEHYACVVDLLGRAGR---LKEAKHLVDTMPIKPNVGIWQTL 851



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 163/354 (46%), Gaps = 9/354 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK 56
           MI+ YV  G  S A+  F          RPD +T   +LKAC +   +  GK+IH  +++
Sbjct: 542 MIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 601

Query: 57  LGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            GF       +  SL+ +Y + G    ARK FD +  +   SW+++I GY Q G+ VEA+
Sbjct: 602 SGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAM 661

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +   ++     +D   ++SI+ V A    +  G  +   +VK        VSN+L++MY
Sbjct: 662 GLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMY 721

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G++  A + F +M  +DV+SW  +I  Y +      A   F  M +  I+PD +  +
Sbjct: 722 LKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYL 781

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++ S  +     +    +   ++        V     VVD+  + G +  A  + + +P+
Sbjct: 782 AVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPI 841

Query: 295 K-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           K +V  W TL++    +G      EV +++   +  NP    YV +   Y   G
Sbjct: 842 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNP--ANYVMMSNLYGQAG 893


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/655 (37%), Positives = 381/655 (58%), Gaps = 10/655 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D +Y+  L +G+RPD YTFP VL+ C  + D   G+++H  VL+ 
Sbjct: 168 MVGGYGKVGFLEEALDLYYRM-LWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRF 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +V V  +L+ MY + G    ARK+FD M V D  SWNAMI+G+ ++      L++ 
Sbjct: 227 GFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELF 286

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V  + +T+ S+         +     +H + VK G   ++   N+LI MY   
Sbjct: 287 LTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSL 346

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A ++F +M  +D +SW ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 347 GRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASAL 406

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G F+  V++ NA+++MYAK   I+ A  VF+ +  KDV
Sbjct: 407 AACACLGRLDVGIKLHELAQNKG-FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDV 465

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+++I G+  N  + EA+  F+ M     + PN  T+++ L A +  GALR G +IHA
Sbjct: 466 VSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSACAATGALRSGKEIHA 523

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  +  + +V   L+D+Y KCG+   A + F        V WN ++S    HG GD 
Sbjct: 524 YVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDI 583

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL+ F QM++ G  PD +TFV+LL ACS +G+V +G   FHMM E+F I P+LKHY CMV
Sbjct: 584 ALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMV 643

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G L  A+N I  MP++PDA++WGALL  CRIH ++ELG +A+  + E++  +V 
Sbjct: 644 DLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVA 703

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           Y+VL+ ++Y + GKW  V  VR   R++GL++  G S +EV      F T + +HP+ ++
Sbjct: 704 YHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKE 763

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           I   L  +  +MK+ G+ P +S   ++V ED+   IL  HSERLA+AFG+I++ P
Sbjct: 764 INVVLHGIYERMKACGFAPVESLEDKEVSEDD---ILCGHSERLAVAFGLINTTP 815



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 236/457 (51%), Gaps = 8/457 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A ++F  MP RD  SWN M+ GY + G   EALD+   M   G+  
Sbjct: 136 AMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRP 195

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    +   G  +H ++++ G    + V N L+ MYAK G +  A +VF
Sbjct: 196 DVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++++       F TM +  +QP+L+T+ S+T     L++  
Sbjct: 256 DGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVG 315

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +HGF ++RG F  DV   N+++ MY  LG +  A  +F  +  KD +SW  +I+GY
Sbjct: 316 FAKEMHGFAVKRG-FAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +ME  N ++P+  T  S L A + +G L  GIK+H           
Sbjct: 375 EKNGFPDKALEVYALMELHN-VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRY 433

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V VA  L++MY K   ID A+ +F  +     V W+++I+    + +  +AL +FR ML 
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLG 493

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             V+P+ +TF++ L+AC+ +G +  G+   H      GI         ++DL+ + G   
Sbjct: 494 H-VKPNSVTFIAALSACAATGALRSGKE-IHAYVLRCGIGSEGYVPNALLDLYVKCGQTS 551

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            A     ++    D   W  +L     HG   LG +A
Sbjct: 552 YAWAQF-SVHSEKDVVSWNIMLSGFVAHG---LGDIA 584



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 202/423 (47%), Gaps = 8/423 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           +A +   C  G   +AL +L+         D     ++  +C     + +G+        
Sbjct: 68  SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
               F L + N +++M  +FG + HA RVF +M ERDV SWN ++  Y +      A   
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  AG++PD+ T   +      + D R  R VH  ++R G F ++V + NA+V MYA
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG-FGDEVDVLNALVTMYA 243

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I +A  VF+G+ V D ISWN +I G+ +N      +E+F  M E NE+ PN  T  
Sbjct: 244 KCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLE-NEVQPNLMTIT 302

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+  A   +  +    ++H   +K     DV     L+ MY   GR+ DA  +F ++   
Sbjct: 303 SVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK 362

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
            ++ W A+IS +  +G  DKAL  +  M    V PD +T  S L AC+  G +  G +  
Sbjct: 363 DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIK-L 421

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHG 516
           H + +  G   ++     +++++ ++ H+  A    + M  + D   W +++ G C  H 
Sbjct: 422 HELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHR 480

Query: 517 NME 519
           + E
Sbjct: 481 SFE 483


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 397/713 (55%), Gaps = 50/713 (7%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEW 61
           +++Y +CGRLS A   FY     S   P+ +++  ++KA        KIH          
Sbjct: 50  VNLYSKCGRLSYARAAFY-----STEEPNVFSYNVIVKA---YAKDSKIH---------- 91

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
                              +AR+LFD++P  D+ S+N +ISGY  +     A+ +   MR
Sbjct: 92  -------------------IARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             G  +D  T++ ++  C    +++  L  H + V  G +    V+N  +  Y+K G++R
Sbjct: 133 KLGFEVDGFTLSGLIAACCDRVDLIKQL--HCFSVSGGFDSYSSVNNAFVTYYSKGGLLR 190

Query: 182 HALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            A+ VF  M E RD VSWNS+I AY Q  +   A   +  M   G + D+ TL S+ + +
Sbjct: 191 EAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS---ACAVFEGLPVKDV 297
             L+     R  HG +++ G F ++  +G+ ++D Y+K G  +    +  VF+ +   D+
Sbjct: 251 TSLDHLIGGRQFHGKLIKAG-FHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309

Query: 298 ISWNTLITGYAQNG-LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           + WNT+I+GY+ N  L+ EA++ F+ M+      P+  ++V +  A S++ +  Q  +IH
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGH-RPDDCSFVCVTSACSNLSSPSQCKQIH 368

Query: 357 ARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              IK+ +  + + V   L+ +Y K G + DA  +F ++P  ++V +N +I  +  HG G
Sbjct: 369 GLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHG 428

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +AL  +++MLD G+ P+ ITFV++L+AC+H G V EGQ YF+ M+E F I+P  +HY C
Sbjct: 429 TEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSC 488

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           M+DL GRAG L  A  FI  MP +P +  W ALLGACR H NM L   A++ L  +    
Sbjct: 489 MIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLA 548

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YV+++N+YA+  KWE +  VR   R + ++K PG S IEV  K  +F   + +HP  
Sbjct: 549 ATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMI 608

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHI---LTSHSERLAIAFGIISSPP 652
            ++ + L  +  KMK +GYV DK + +   +E  +      L  HSE+LA+AFG++S+  
Sbjct: 609 REVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRD 668

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              + + KNLR+CGDCHN  KF+S +  REIIVRD+ RFH FKDG CSCGDYW
Sbjct: 669 GEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 215/491 (43%), Gaps = 88/491 (17%)

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH--------------------- 182
           ++ +G  +H   VK  +  + ++SN+ +N+Y+K G + +                     
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82

Query: 183 ----------ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
                     A ++FD++ + D VS+N++I+ Y  + +   A   F  M++ G + D  T
Sbjct: 83  AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           L  L  I A  +     + +H F +  G F     + NA V  Y+K G++  A +VF G+
Sbjct: 143 LSGL--IAACCDRVDLIKQLHCFSVSGG-FDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 293 -PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
             ++D +SWN++I  Y Q+   ++A+ +++ M        +  T  S+L A + +  L  
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEM-IFKGFKIDMFTLASVLNALTSLDHLIG 258

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID---DAMSLFYQVPRSSSVPWNAIISC 408
           G + H ++IK     +  V + L+D Y KCG  D   D+  +F ++     V WN +IS 
Sbjct: 259 GRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISG 318

Query: 409 HGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSH--------------------- 446
           + ++ +  ++A+  FRQM   G RPD  +FV + +ACS+                     
Sbjct: 319 YSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPS 378

Query: 447 ---------------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
                          SG + + +  F  M E   +      + CM+  + + GH   A  
Sbjct: 379 NRISVNNALISLYYKSGNLQDARWVFDRMPELNAVS-----FNCMIKGYAQHGHGTEALL 433

Query: 492 FIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRL---FEVDSENVGYYVLMSNI 545
             Q M    + P+   + A+L AC   G ++ G    + +   F+++ E   +Y  M ++
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE-AEHYSCMIDL 492

Query: 546 YANVGKWEGVD 556
               GK E  +
Sbjct: 493 LGRAGKLEEAE 503



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 1   MISVYVRCGRLSE-AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLK 56
           MIS Y     LSE AV  F Q     G RPD  +F  V  AC NL      K+IH   +K
Sbjct: 315 MISGYSMNEELSEEAVKSFRQMQRI-GHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIK 373

Query: 57  LGFEWD-VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
                + + V  +L+ +Y + G    AR +FD MP  ++ S+N MI GY Q G+  EAL 
Sbjct: 374 SHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALL 433

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN--LINM 173
           +   M   G++ + IT  ++L  CA    +  G   +   +K   +      +   +I++
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE-YFNTMKETFKIEPEAEHYSCMIDL 492

Query: 174 YAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
             + G +  A R  D M  +   V+W +++ A
Sbjct: 493 LGRAGKLEEAERFIDAMPYKPGSVAWAALLGA 524


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/626 (37%), Positives = 367/626 (58%), Gaps = 18/626 (2%)

Query: 90  PVRDSGSWNA--MISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNI 145
           P +D  S N   +I   C+ GN  +A+ +L          +P   T   ++  C   +++
Sbjct: 37  PTKDIKSNNNDDLIQSLCRGGNLKQAVQLL------CCEPNPTKKTFELLINSCIEQNSL 90

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G+ +H  +V  GL+ + +++  LINMY   G + HA +VFD+  E+ +  WN+I  A 
Sbjct: 91  SDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRAL 150

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTL--VSLTSIVAQLNDC--RNSRSVHGFIMRRGW 261
             ++        +  M   GI  +  T   V    +V++L+ C  R  + +H  I+R G 
Sbjct: 151 AMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHG- 209

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           +   V +   ++D+YA+ G ++ A +VF  +P K+++SW+ +I  YA+N +  +A+E+FQ
Sbjct: 210 YEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQ 269

Query: 322 --MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
             M+E C+ + PN  T VS+L A + + AL  G  +HA V++  L   + V   L+ MYG
Sbjct: 270 IMMLEACDTV-PNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYG 328

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           +CG I     +F  + +   + WN++IS +G+HG G KA+  F  M++ GV P +ITF++
Sbjct: 329 RCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFIT 388

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           +L ACSH+GLV E +  F  M  ++ I P ++HY CMVD+ GRA  L  A   IQNM  +
Sbjct: 389 VLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFK 448

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           P  ++WG+LLG+CRIH N+EL   AS  LFE++ +N G YVL+S+IYA    W  V  VR
Sbjct: 449 PGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVR 508

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
                RGL+K P  S IEV  K+    +    +P+ E++   L  L  ++K+ GYVP  +
Sbjct: 509 KQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTN 568

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            V  D++E+EKE I+  HS +LA+AFG+I++     I+I  NLR+C DCH + KF+S+ T
Sbjct: 569 VVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFT 628

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            REI++RD NRFH FKDG+CSCGDYW
Sbjct: 629 NREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 216/432 (50%), Gaps = 36/432 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I    R G L +AV       L     P   TF  ++ +C    +L DG  +H  ++  
Sbjct: 49  LIQSLCRGGNLKQAVQ-----LLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGS 103

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + D ++A  L++MYC  G  + A K+FD+   +    WNA+      +    + L + 
Sbjct: 104 GLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLY 163

Query: 118 DEMRLEGVSMDPITVASILPVCARSD----NILSGLLIHLYIVKHGLEFNLFVSNNLINM 173
            +M   G+  +  T   +L  C  S+     +  G  IH +I++HG E ++ V   L+++
Sbjct: 164 GQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDV 223

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPDLL 231
           YA+FG + +A  VF  M ++++VSW+++IA Y ++  P+ A   F  M  +     P+ +
Sbjct: 224 YARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPI 283

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T+VS+    A L    + + VH +++RRG     + + N ++ MY + G I++   VF+ 
Sbjct: 284 TMVSVLQACASLAALEHGKLVHAYVLRRG-LDSTLPVLNTLITMYGRCGEISTGQRVFDY 342

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  +DVISWN+LI+ Y  +GL  +AI++F+ M     ++P+  T++++L A SH G + +
Sbjct: 343 MKKRDVISWNSLISIYGMHGLGKKAIQIFENMIN-RGVSPSYITFITVLCACSHAGLVEE 401

Query: 352 G----------IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
                       +IH R+             C+VD+ G+  R+D+A+ L   +  +    
Sbjct: 402 AKILFESMLNKYRIHPRMEH---------YACMVDILGRANRLDEAIELIQNMDFKPGPT 452

Query: 401 PWNAIISCHGIH 412
            W +++    IH
Sbjct: 453 VWGSLLGSCRIH 464


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/586 (40%), Positives = 340/586 (58%), Gaps = 33/586 (5%)

Query: 152 HLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           H  I++ GL  +      +I   A  K G + +AL VFD++   D   +N+I   Y +  
Sbjct: 40  HSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQ 99

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                   ++ M    + P+  T   L             + +H  +++ G F  D    
Sbjct: 100 LARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG-FGADGFSL 158

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++ MY     +  A  VF+ +P +DV+SW +LITGY+Q G   +A EVF++M E N +
Sbjct: 159 NNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSV 218

Query: 330 NPNQ--GTYV----------------------------SILPAYSHVGALRQGIKIHARV 359
           + N     YV                            S+L A + +GAL QG  IH  +
Sbjct: 219 SWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYI 278

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            K+ +  D  +AT ++DMY KCG ++ A  +F ++P+     WN +I    +HG+G+ A+
Sbjct: 279 EKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAI 338

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F++M  E V PD ITFV++L+AC+HSGLV EG+ YF  M E  G+KP ++H+GCMVDL
Sbjct: 339 ELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDL 398

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  A   I  MPV PDA + GAL+GACRIHGN ELG     ++ E++  N G Y
Sbjct: 399 LGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRY 458

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL++N+YA+ G+WE V +VR L  DRG+KK PG+S IE  + VD F  G R HP+ ++IY
Sbjct: 459 VLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIY 518

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
            +L  +   ++S+GYVPD   VL D++E+EKE+ L  HSE+LAIAFG++ + P   ++I 
Sbjct: 519 AKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRIS 578

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLR+C DCH  +K IS++ +REII+RD NRFHHF+ G CSC DYW
Sbjct: 579 KNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 195/427 (45%), Gaps = 41/427 (9%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC---RFGLANVARKLFDDMPVRDS 94
           L +C  + + K+ H  +++LG   D      ++  +C   + G  N A ++FD +P  D+
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK-FCAISKSGDLNYALEVFDKIPHPDA 85

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N +  GY +   A   + +   M  + VS +  T   ++  C     I  G  IH +
Sbjct: 86  YIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAH 145

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS----------------- 197
           ++K G   + F  NNLI+MY  F  +  A RVFD M +RDVVS                 
Sbjct: 146 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKA 205

Query: 198 --------------WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
                         WN++IAAY QSN    A   F  M+   +  D     S+ S    L
Sbjct: 206 REVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGL 265

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + +HG+I + G  + D  +   V+DMY K G +  A  VF  LP K + SWN +
Sbjct: 266 GALEQGKWIHGYIEKSGIEL-DSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 324

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G A +G    AIE+F+ ME    + P+  T+V++L A +H G + +G K + + +   
Sbjct: 325 IGGLAMHGKGEAAIELFKEMER-EMVAPDGITFVNVLSACAHSGLVEEG-KHYFQYMTEV 382

Query: 364 LCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALN 420
           L     +    C+VD+ G+ G +++A  L  ++P +       A++    IHG  +    
Sbjct: 383 LGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQ 442

Query: 421 FFRQMLD 427
             +++++
Sbjct: 443 IGKKVIE 449



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 181/415 (43%), Gaps = 43/415 (10%)

Query: 10  RLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
           R   A +C + ++  L   + P+ +T+PP+++AC     + +GK+IH  VLK GF  D F
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRD------------------------------- 93
              +L+HMY  F     AR++FD+MP RD                               
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S SWNAMI+ Y QS    EA  + D MRLE V +D    AS+L  C     +  G  IH 
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           YI K G+E +  ++  +I+MY K G +  A  VF+++ ++ + SWN +I           
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M++  + PD +T V++ S  A        +    ++         +     +V
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMV 396

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-N 332
           D+  + G++  A  +   +PV         + G  +    +E  E  Q+ ++  E+ P N
Sbjct: 397 DLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGE--QIGKKVIELEPHN 454

Query: 333 QGTYVSILPAYSHVGALRQGIKIHA----RVIKNCLCFDVFVATCLVDMYGKCGR 383
            G YV +   Y+  G      K+      R +K    F +  +   VD +   GR
Sbjct: 455 SGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGR 509


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/640 (37%), Positives = 361/640 (56%), Gaps = 38/640 (5%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +  +I  +CQ     EA+D L  +        P   ++++  C R   +  G  +H +  
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRI----PQPSPRLYSTLIAACLRHRKLELGKRVHAHTK 90

Query: 157 KHGLEFNLFVSNNLINMYAK-------------------------------FGMMRHALR 185
                  + +SN LI+MYAK                                G +  A +
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLN 244
           +FD+M  RD  SWN++I+ Y      + A   F  MQ+      ++ TL S  +  A ++
Sbjct: 151 LFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
             R  + +HG+++R G  +++V+   A++D+Y K G +N A  +F+ +  KD++SW T+I
Sbjct: 211 SLRRGKEIHGYLIRSGLELDEVVW-TALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMI 269

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
               ++G   E   +F+ +     + PN+ T+  +L A + + A + G ++H  + +   
Sbjct: 270 HRCFEDGRKKEGFSLFRDLMGSG-VRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGY 328

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
               F A+ LV +Y KCG  + A  +F Q+PR   V W ++I  +  +GQ D AL FF  
Sbjct: 329 DPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFES 388

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           +L  G +PD ITFV +L+AC+H+GLV  G  YFH ++E+ G+     HY C++DL  R+G
Sbjct: 389 LLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSG 448

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
               A N I NMP++PD  +W +LLG CRIHGN+EL   A+  LFE++ EN   Y+ +SN
Sbjct: 449 RFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSN 508

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           IYAN G W    +VR+   +RG+ K PG S IE+  +V +F  G+ +HPK   I++ L  
Sbjct: 509 IYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGE 568

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
           L+ KMK  GYV D +FVL DVEE++KE  +  HSE+LA+AFGIIS+ P +PI++FKNLR 
Sbjct: 569 LSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRT 628

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           C DCHN  K+IS+I +R+IIVRDSNRFH F DG CSC DY
Sbjct: 629 CVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 236/490 (48%), Gaps = 47/490 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I ++ +  RL EAVD  ++    S   P  Y+   ++ AC   R L  GK++H      
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIPQPS---PRLYS--TLIAACLRHRKLELGKRVHAHTKAS 92

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F   + ++  L+HMY + G    A+ LFD++P +D  SWN MISGY   G   +A  + 
Sbjct: 93  NFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLF 152

Query: 118 DEMR---------------LEGVSMDPITVASILPVCARSD-NILS-------------- 147
           DEM                 +G  M+ + +  ++     S+ N+ +              
Sbjct: 153 DEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSL 212

Query: 148 --GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH Y+++ GLE +  V   L+++Y K G +  A  +FDQM ++D+VSW ++I   
Sbjct: 213 RRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRC 272

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            +          F  +  +G++P+  T   + +  A L   +  + VHG++ R G +   
Sbjct: 273 FEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVG-YDPF 331

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
               +A+V +Y+K G   +A  VF  +P  D++SW +LI GYAQNG    A++ F+ +  
Sbjct: 332 SFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
                P++ T+V +L A +H G +  G++  H+   K+ L        C++D+  + GR 
Sbjct: 392 SG-TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRF 450

Query: 385 DDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLT 442
            +A ++   +P +     W +++    IHG  + A    + + +  + P++  T+++L  
Sbjct: 451 KEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFE--LEPENPATYITLSN 508

Query: 443 ACSHSGLVSE 452
             +++GL +E
Sbjct: 509 IYANAGLWTE 518



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 20/366 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS YV  G   EA+D F           + +T    L A   +     GK+IH  +++ 
Sbjct: 166 VISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRS 225

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D  V  +LL +Y + G  N AR +FD M  +D  SW  MI    + G   E   + 
Sbjct: 226 GLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLF 285

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            ++   GV  +  T A +L  CA       G  +H Y+ + G +   F ++ L+++Y+K 
Sbjct: 286 RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKC 345

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A RVF+QM   D+VSW S+I  Y Q+  P  A  FF ++ ++G +PD +T V + 
Sbjct: 346 GNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVL 405

Query: 238 SIVAQ-------LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           S           L    + +  HG +     +         V+D+ A+ G    A  + +
Sbjct: 406 SACTHAGLVDIGLEYFHSVKEKHGLVHTADHYA-------CVIDLLARSGRFKEAENIID 458

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
            +P+K D   W +L+ G   +G    A    + + E    NP   TY+++   Y++ G  
Sbjct: 459 NMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENP--ATYITLSNIYANAGLW 516

Query: 350 RQGIKI 355
            +  K+
Sbjct: 517 TEETKV 522


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/573 (39%), Positives = 347/573 (60%), Gaps = 3/573 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A+ L  C + D    G  +H  I+K G   +LF  N L+NMY K   +  A ++FD+M E
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPE 101

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R+ +S+ ++I  Y +S   + A   F  + +  + P+  T  S+    A +        +
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQI 160

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  +++ G    DV + NA++D+YAK G + ++  +F   P ++ ++WNT+I G+ Q G 
Sbjct: 161 HCHVIKIG-LHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGD 219

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             +A+ +F  M E   +   + TY S L A + + AL  G++IH+  +K     D+ V  
Sbjct: 220 GEKALRLFLNMLE-YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 278

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+DMY KCG I DA  +F  + +   V WNA+IS + +HG G +AL  F +M +  V+P
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKP 338

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D +TFV +L+AC+++GL+ +GQ YF  M ++ GI+P ++HY CMV L GR GHL  A   
Sbjct: 339 DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKL 398

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           I  +P +P   +W ALLGAC IH ++ELG +++ R+ E++ ++   +VL+SN+YA   +W
Sbjct: 399 IDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRW 458

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 612
           + V  VR   + +G+KK PG S IE    V  F  G+ +HP+   I   L  L  K K  
Sbjct: 459 DNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKA 518

Query: 613 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 672
           GY+P+ + VL DVE++EKE +L  HSERLA++FGII +P  SPI+I KNLR+C DCH   
Sbjct: 519 GYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAI 578

Query: 673 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           K IS++ +REI+VRD NRFHHF++G+CSCGDYW
Sbjct: 579 KCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 9/370 (2%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +HC +LK G   D+F    LL+MY +      A KLFD+MP R++ S+  +I GY +
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           S   +EA+++   +  E V  +  T AS+L  CA  + +  G  IH +++K GL  ++FV
Sbjct: 117 SVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           SN L+++YAK G M +++ +F +   R+ V+WN++I  + Q  D   A   F  M +  +
Sbjct: 176 SNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRV 235

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           Q   +T  S     A L        +H   ++   F +D+++ NA++DMYAK G I  A 
Sbjct: 236 QATEVTYSSALRACASLAALEPGLQIHSLTVKTT-FDKDIVVTNALIDMYAKCGSIKDAR 294

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VF+ +  +D +SWN +I+GY+ +GL  EA+ +F  M+E  E+ P++ T+V +L A ++ 
Sbjct: 295 LVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQE-TEVKPDKLTFVGVLSACANA 353

Query: 347 GALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-PW 402
           G L QG      +I++     C + +  TC+V + G+ G +D A+ L  ++P   SV  W
Sbjct: 354 GLLDQGQAYFTSMIQDHGIEPCIEHY--TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVW 411

Query: 403 NAIISCHGIH 412
            A++    IH
Sbjct: 412 RALLGACVIH 421



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 131/244 (53%), Gaps = 5/244 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I  Y    R  EA++ F +  L   + P+ +TF  VL+AC     L  G +IHC V+K+
Sbjct: 110 LIQGYAESVRFLEAIELFVR--LHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV+ +L+ +Y + G    + +LF + P R+  +WN +I G+ Q G+  +AL + 
Sbjct: 168 GLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLF 227

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V    +T +S L  CA    +  GL IH   VK   + ++ V+N LI+MYAK 
Sbjct: 228 LNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKC 287

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++ A  VFD M ++D VSWN++I+ Y        A   F  MQ+  ++PD LT V + 
Sbjct: 288 GSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVL 347

Query: 238 SIVA 241
           S  A
Sbjct: 348 SACA 351



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 33  TFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T+   L+AC +L     G +IH   +K  F+ D+ V  +L+ MY + G    AR +FD M
Sbjct: 241 TYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM 300

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             +D  SWNAMISGY   G   EAL I D+M+   V  D +T   +L  CA +  +  G 
Sbjct: 301 NKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQ 360

Query: 150 LIHLYIVK-HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQ 207
                +++ HG+E  +     ++ +  + G +  A+++ D++  +  V+ W +++ A   
Sbjct: 361 AYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 420

Query: 208 SNDPITAHGFFTTMQQAGIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
            ND     G  +  +   ++P D  T V L+++ A      N  SV   + R+G
Sbjct: 421 HND--IELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKG 472


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/541 (40%), Positives = 342/541 (63%), Gaps = 7/541 (1%)

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           F+ N LINMY KFG++  A  VFD+M +R+VVSW ++I+AY  +     A  F   M + 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G++P++ T    +S++   +   N R +H  I++ G    DV + +A++D+Y++ G + +
Sbjct: 61  GVRPNMFTY---SSVLRACDGLFNLRQLHCCIIKIG-LDSDVFVRSALIDVYSRWGELEN 116

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VF+ +   D++ W+++I G+AQN    EA+ +F+ M+    +   Q T  S+L A +
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFL-AQQTTLTSVLRACT 175

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
            +  L  G ++H  V+K     D+ +   L+DMY KCG ++DA ++F ++     + W+ 
Sbjct: 176 GLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWST 233

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           +I+    +G   +AL  F  M   G++P+++T V +L ACSH+GLV EG  YFH M+E F
Sbjct: 234 MIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELF 293

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
           GI P  +HYGCM+DL GRAG L  A + I  M   PDA  W ALL ACR+H N+++   A
Sbjct: 294 GIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHA 353

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           + ++  +D ++ G YVL+SNIYAN  +W  V EVR    +RG+KK PG S IEV+ ++  
Sbjct: 354 AKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHA 413

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+R+HP+  +I  +L  L  K+  +GYVPD +FVLQD+E ++ +  L  HSE+LAI 
Sbjct: 414 FILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIV 473

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           FG++S P    I+I KNLR+CGDCH +TK ++++ +R I++RD  R+HHF+DG+CSCGD+
Sbjct: 474 FGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDF 533

Query: 705 W 705
           W
Sbjct: 534 W 534



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 210/366 (57%), Gaps = 11/366 (3%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+   L++MY +FGL + A+ +FD MP R+  SW  MIS Y  +    +AL+ L  M  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           GV  +  T +S+L  C   D + +   +H  I+K GL+ ++FV + LI++Y+++G + +A
Sbjct: 61  GVRPNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           LRVFD+M+  D+V W+SIIA + Q++D   A   F  M++AG      TL S+      L
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R VH  +++   + +D+I+ NA++DMY K G +  A AVF  +  KDVISW+T+
Sbjct: 178 ALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTM 234

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G AQNG + EA+++F+ M+    I PN  T V +L A SH G + +G+  +   +K  
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLG-IKPNYVTIVGVLFACSHAGLVEEGL-YYFHSMKEL 292

Query: 364 LCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALN 420
              D       C++D+ G+ GR+ +A+ L  ++     +V W A+++   +H   D A++
Sbjct: 293 FGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIH 352

Query: 421 FFRQML 426
             +Q+L
Sbjct: 353 AAKQIL 358



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 140/236 (59%), Gaps = 3/236 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y    +L++    F    L  G+RP+ +T+  VL+AC  L + +++HC ++K+G +
Sbjct: 37  MISAY-SAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLD 95

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFV ++L+ +Y R+G    A ++FD+M   D   W+++I+G+ Q+ +  EAL +   M
Sbjct: 96  SDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRM 155

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           +  G      T+ S+L  C     +  G  +H++++K+  + +L ++N L++MY K G +
Sbjct: 156 KRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSL 213

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             A  VF +M+E+DV+SW+++IA   Q+     A   F +M+  GI+P+ +T+V +
Sbjct: 214 EDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGV 269


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/531 (40%), Positives = 341/531 (64%), Gaps = 6/531 (1%)

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M +A ++FD+M +     WN+I+  Y ++  P  A   +  M+  G++PD  T   + 
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              A+L +      +HG +++ G  +E V  +   ++ MY K G +  A  +F  +  +D
Sbjct: 143 KACAELAELWAGLGMHGHVVKHG--LEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERD 200

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +++WN LI    Q G +S+A++ F+ M     I P+  T VS L A  H+G L  G +I+
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAG-IKPDSVTIVSALSACGHLGCLETGEEIY 259

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
               +  +  ++ V    +DM  KCG +D AM+LF ++P+ + + W+ +I  + ++G+ +
Sbjct: 260 EFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESE 319

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE--EFGIKPHLKHYG 474
           KAL  F +M ++GV+P+++TF+++L+ACSH+G V+EG +YF+ M +  +  I+P  +HY 
Sbjct: 320 KALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYA 379

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CMVDL GR+GHL  A+NFI+ MP+  D  IWGALLGAC IH N++LG   +D LFE+  E
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPE 439

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
              Y+VL+SN+YA  G+W  V++VR   + +G +K   +SS+E N ++ I Y G+++HP+
Sbjct: 440 IASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQ 499

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
              I  +L +L  +MKS+GY+P+   V  DVE++EKE  L++HSE+LAIAF +I+  PK 
Sbjct: 500 SASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKF 559

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           PI++ KNLR+CGDCH + K +S+IT REII+RD NRFHHFK+GICSC D+W
Sbjct: 560 PIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 184/341 (53%), Gaps = 8/341 (2%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G  + AR+LFD+M       WN ++ GY ++G   +A+ +  +MR  GV  DP T   ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             CA    + +GL +H ++VKHGLEF   V   L+ MY KFG +  A  +F  M+ERD+V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           +WN++IA   Q+     A   F  M  AGI+PD +T+VS  S    L        ++ F 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
              G    ++I+ NA +DM AK G ++ A  +F+ +P ++VISW+T+I GYA NG + +A
Sbjct: 263 REEG-IDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKA 321

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI----KNCLCFDVFVAT 372
           + +F  M+    + PN  T++++L A SH G + +G +    +     KN        A 
Sbjct: 322 LALFSRMKN-QGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYA- 379

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           C+VD+ G+ G +++A +    +P  +    W A++    IH
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIH 420



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 4/237 (1%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           YV+ G   +AV  + +     G+RPD +TFP V+KAC  L +   G  +H  V+K G E+
Sbjct: 110 YVKNGIPDKAVSVYGKMRHL-GVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEF 168

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
              V   L+ MY +FG    A  LF  M  RD  +WNA+I+   Q+G + +AL    EM 
Sbjct: 169 VAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMG 228

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           + G+  D +T+ S L  C     + +G  I+ +  + G++ N+ V N  ++M AK G M 
Sbjct: 229 MAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMD 288

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            A+ +FD+M +R+V+SW+++I  Y  + +   A   F+ M+  G+QP+ +T +++ S
Sbjct: 289 KAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLS 345



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +I+V V+ G  S+A+  F +  + +G++PD  T    L AC +L     G++I+    + 
Sbjct: 207 LIAVCVQTGFSSKALQSFREMGM-AGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREE 265

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + ++ V  + L M  + G  + A  LFD+MP R+  SW+ +I GY  +G + +AL + 
Sbjct: 266 GIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALF 325

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG 148
             M+ +GV  + +T  ++L  C+ +  +  G
Sbjct: 326 SRMKNQGVQPNYVTFLAVLSACSHTGRVNEG 356


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/690 (34%), Positives = 378/690 (54%), Gaps = 13/690 (1%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKLGFEW 61
           Y       EA   F Q   +  L PD+ TF  +L  C + V      ++H   +KLGF+ 
Sbjct: 116 YAGNNHFDEAFKLFRQMCRSCTL-PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDT 174

Query: 62  DVF--VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           ++F  V   LL  YC     ++A  LF+++  +DS ++N +I+GY + G   EA+ +  +
Sbjct: 175 NLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLK 234

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MR  G      T + +L       +   G  +H   V  G   +  V N +++ Y+K   
Sbjct: 235 MRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDR 294

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +     +F++M E D VS+N +I++Y Q+     +   F  MQ  G         ++ SI
Sbjct: 295 VLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSI 354

Query: 240 VAQLNDCRNSRSVH--GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            A L+  +  R VH    +      +    +GN++VDMYAK  + + A  +F+ L  +  
Sbjct: 355 AANLSSLQVGRQVHCQAIVATADSILH---VGNSLVDMYAKCEMFDEAELIFKSLSQRST 411

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW  LI+GY Q GL    +++F  M   N +  +Q T+ ++L A +   +L  G ++HA
Sbjct: 412 VSWTALISGYVQKGLHGAGLKLFTKMRGAN-LRADQSTFATVLKASAGFASLLLGKQLHA 470

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I++    +VF  + LVDMY KCG I DA+ +F ++P  ++V WNA+IS +  +G G+ 
Sbjct: 471 FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEA 530

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M+  G++PD ++ + +L ACSH G V +G  +F  M   +GI P  KHY CM+
Sbjct: 531 AIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACML 590

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENV 536
           DL GR G    A   +  MP  PD  +W ++L ACRI+ N  L   A+++LF ++   + 
Sbjct: 591 DLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDA 650

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YV MSNIYA  GKWE V  V+   R+RG+KK P +S +EVN+K+ +F + ++THP  +
Sbjct: 651 AAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGD 710

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +I  ++  LT +++  GY PD S V+QD++E  K   L  HSERLA+AF +IS+P   PI
Sbjct: 711 EIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFALISTPEGCPI 770

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVR 686
            + KNLR C DCH   K IS+I +R I  +
Sbjct: 771 VVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 242/521 (46%), Gaps = 47/521 (9%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           +++   ++K GF  D   +   +    R G  + A K++D+MP +++ S N MISGY + 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 108 GNAVEALDILDEMRLEGVSM-------------------------------DPITVASIL 136
           G+   A  + D M    V                                 D +T  ++L
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 137 PVC--ARSDNILSGLLIHLYIVKHGLEFNLFVS--NNLINMYAKFGMMRHALRVFDQMME 192
           P C  A   N +    +H + VK G + NLF++  N L+  Y +   +  A  +F+++++
Sbjct: 149 PGCNDAVPQNAVGQ--VHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILD 206

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +D V++N++I  YE+      A   F  M+Q+G +P   T   +   V  L+D    + +
Sbjct: 207 KDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQL 266

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HG  +  G F  D  +GN ++  Y+K   +     +F  +P  D +S+N +I+ Y+Q   
Sbjct: 267 HGLSVTTG-FSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQ 325

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             E++ +F+ M +C   +     + ++L   +++ +L+ G ++H + I       + V  
Sbjct: 326 YEESLNLFREM-QCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGN 384

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH---GIHGQGDKALNFFRQMLDEG 429
            LVDMY KC   D+A  +F  + + S+V W A+IS +   G+HG G   L  F +M    
Sbjct: 385 SLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAG---LKLFTKMRGAN 441

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           +R D  TF ++L A +    +  G++    +     ++      G +VD++ + G +  A
Sbjct: 442 LRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDA 500

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
               + MP R +A  W AL+ A   +G+ E    A  ++ +
Sbjct: 501 VQVFEEMPDR-NAVSWNALISAYADNGDGEAAIGAFTKMIQ 540


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/738 (36%), Positives = 400/738 (54%), Gaps = 51/738 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK-----KIHCSVL 55
           MIS YV   +   A D F +  L  G+ P+      VL A R+L  GK      IH  V 
Sbjct: 194 MISGYVLIEQHGRAWDMF-RTMLCEGMTPEQPNLVSVLSAVRHL--GKPGILESIHVLVH 250

Query: 56  KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           K GFE DV V  ++L+ Y +   + + A K F+ M  R+  +W+ +I+   Q+G   +A 
Sbjct: 251 KTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAF 310

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
            +     L+ V     +  S+L   AR   I    ++   I     E N+   N +I  Y
Sbjct: 311 AVYQRDPLKSVP----SRTSMLTGLARYGRIDDAKILFDQI----HEPNVVSWNAMITGY 362

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            +  M+  A  +F++M  R+ +SW  +IA Y ++     A      + + G+ P L +L 
Sbjct: 363 MQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLT 422

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS---------- 284
           S     + +      + VH   ++ G      +  NA++ +Y K   I S          
Sbjct: 423 SSFFACSNIEALETGKQVHSLAVKAGCQFNSYVC-NALITLYGKYRSIGSVRQIFDRMTV 481

Query: 285 ---------------------ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
                                A  VF  +P  DV+SW T+I+  AQ    +EA+E+F+ M
Sbjct: 482 KDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSM 541

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
               E+ PN      +L    ++GA + G +IH   IK  +   + VA  LV MY KC  
Sbjct: 542 LHEREL-PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS 600

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
            D ++ +F  +       WN II+ +  HG G +A+  ++ M+  GV P+ +TFV LL A
Sbjct: 601 AD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHA 659

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CSHSGLV EG ++F  M  ++G+ P L+HY CMVDL GRAG +  A +FI +MP+ PD+ 
Sbjct: 660 CSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSV 719

Query: 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563
           IW ALLGAC+IH N+E+G  A+++LF ++  N G YV++SNIY++ G W+ V +VR L +
Sbjct: 720 IWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMK 779

Query: 564 DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQ 623
           +RG+ K PG S +++ NK+  F TG+  H + + IY  L  L   +K+ GYVPD  FVL 
Sbjct: 780 ERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLH 839

Query: 624 DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           D++E++KE  L  HSE+LA+A+G++ +P   PIQI KNLR+CGDCH + KF+S +T+REI
Sbjct: 840 DIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREI 899

Query: 684 IVRDSNRFHHFKDGICSC 701
            VRD NRFHHF++G CSC
Sbjct: 900 DVRDGNRFHHFRNGSCSC 917



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 218/482 (45%), Gaps = 60/482 (12%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           ++  R + DG  +  +V      W+  V       Y + G   +ARKLFD MP RD  SW
Sbjct: 111 VRDARRVFDGMGVRNTV-----AWNAMVTC-----YVQNGDITLARKLFDAMPSRDVSSW 160

Query: 98  NAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASIL-----------------PVC 139
           N M++GYC S    EA ++ + M    GVS   +    +L                  + 
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 140 ARSDNILS-----------GLL--IHLYIVKHGLEFNLFVSNNLINMYAK-FGMMRHALR 185
               N++S           G+L  IH+ + K G E ++ V   ++N Y K   M+  A++
Sbjct: 221 PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVK 280

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
            F+ M  R+  +W++IIAA  Q+     A   +        +  L ++ S TS++  L  
Sbjct: 281 FFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQ-------RDPLKSVPSRTSMLTGL-- 331

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            R  R     I+       +V+  NA++  Y +  +++ A  +F  +P ++ ISW  +I 
Sbjct: 332 ARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIA 391

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GYA+NG + +A+   Q +     + P+  +  S   A S++ AL  G ++H+  +K    
Sbjct: 392 GYARNGRSEQALVSLQALHR-KGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQ 450

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           F+ +V   L+ +YGK   I     +F ++    +V +N+ +S    +   D+A + F  M
Sbjct: 451 FNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM 510

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
                 PD +++ ++++AC+ +   +E    F  M  E      L +   +  L G +G+
Sbjct: 511 PS----PDVVSWTTIISACAQADQGNEAVEIFRSMLHE----RELPNPPILTILLGLSGN 562

Query: 486 LG 487
           LG
Sbjct: 563 LG 564



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 221/513 (43%), Gaps = 72/513 (14%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           LL  Y R G    AR++FD M VR++ +WNAM++ Y Q+G+   A  + D M    VS  
Sbjct: 101 LLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS-- 158

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
                                                  N ++  Y    +M  A  +F+
Sbjct: 159 -------------------------------------SWNTMLTGYCHSQLMEEARNLFE 181

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M ER+ VSW  +I+ Y        A   F TM   G+ P+   LVS+ S V  L     
Sbjct: 182 RMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGI 241

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAK-LGIINSACAVFEGLPVKDVISWNTLITGY 307
             S+H  + + G F  DV++G A+++ Y K + +++SA   FEG+  ++  +W+T+I   
Sbjct: 242 LESIHVLVHKTG-FERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAAL 300

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           +Q G   +A  V+Q        +P        L +     ++  G+  + R+    + FD
Sbjct: 301 SQAGRIDDAFAVYQR-------DP--------LKSVPSRTSMLTGLARYGRIDDAKILFD 345

Query: 368 ------VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                 V     ++  Y +   +D+A  LF ++P  +++ W  +I+ +  +G+ ++AL  
Sbjct: 346 QIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVS 405

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC--MVDL 479
            + +  +G+ P   +  S   ACS+   +  G++  H +  + G +     Y C  ++ L
Sbjct: 406 LQALHRKGMLPSLSSLTSSFFACSNIEALETGKQ-VHSLAVKAGCQ--FNSYVCNALITL 462

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
           +G+   +G        M V+ D   + + + A  +  N  L   A D    + S +V  +
Sbjct: 463 YGKYRSIGSVRQIFDRMTVK-DTVSYNSFMSAL-VQNN--LFDEARDVFNNMPSPDVVSW 518

Query: 540 VLMSNIYANVGKW-EGVDEVRSLARDRGLKKTP 571
             + +  A   +  E V+  RS+  +R L   P
Sbjct: 519 TTIISACAQADQGNEAVEIFRSMLHERELPNPP 551



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 174/444 (39%), Gaps = 98/444 (22%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G  + AR++FD MP RD  +WN+MI  YC +G                          
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNG-------------------------- 78

Query: 135 ILPVCARS--DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            +P   RS  D I  G              NL     L++ YA+ G +R A RVFD M  
Sbjct: 79  -MPDAGRSLADAISGG--------------NLRTGTILLSGYARAGRVRDARRVFDGMGV 123

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R+ V+WN+++  Y Q+ D   A   F  M                               
Sbjct: 124 RNTVAWNAMVTCYVQNGDITLARKLFDAMPS----------------------------- 154

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
                       DV   N ++  Y    ++  A  +FE +P ++ +SW  +I+GY     
Sbjct: 155 -----------RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQ 203

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI--KIHARVIKNCLCFDVFV 370
              A ++F+ M  C  + P Q   VS+L A  H+G  + GI   IH  V K     DV V
Sbjct: 204 HGRAWDMFRTM-LCEGMTPEQPNLVSVLSAVRHLG--KPGILESIHVLVHKTGFERDVVV 260

Query: 371 ATCLVDMYGK-CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
            T +++ Y K    +D A+  F  +   +   W+ II+     G+ D A   +++   + 
Sbjct: 261 GTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS 320

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V     +  S+LT  +  G + + +  F  + E     P++  +  M+  + +   +  A
Sbjct: 321 VP----SRTSMLTGLARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEA 371

Query: 490 HNFIQNMPVRPDASIWGALLGACR 513
            +    MP R   S  G + G  R
Sbjct: 372 EDLFNRMPFRNTISWAGMIAGYAR 395



 Score = 43.1 bits (100), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 11/135 (8%)

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           G+ GR+ +A  +F  +P    + WN++I  +  +G  D   +    +    +R   I   
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTI--- 100

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            LL+  + +G V + +R F  M    G++  +  +  MV  + + G + +A      MP 
Sbjct: 101 -LLSGYARAGRVRDARRVFDGM----GVRNTVA-WNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 499 RPDASIWGALL-GAC 512
           R D S W  +L G C
Sbjct: 155 R-DVSSWNTMLTGYC 168


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/665 (37%), Positives = 371/665 (55%), Gaps = 39/665 (5%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVAS 134
           GL N A ++FD  P R   +W ++ISG  + G   + +    EM  E  +  P    +A 
Sbjct: 73  GLHN-AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAG 131

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  CA   ++ SG  IH +I++ G+  ++ + N +++MYAK G    A R F  M ++D
Sbjct: 132 VLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKD 191

Query: 195 VVSWNSIIAAYEQSNDPITA------------------------HGFFT-------TMQQ 223
             SWN +I A  Q  D + A                        HG  T        M +
Sbjct: 192 ATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVR 251

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           AG+     T   + ++   L+     R +HG ++      ED  +G +++DMY K G + 
Sbjct: 252 AGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVV-AVLEEDAFVGCSLMDMYCKCGEME 310

Query: 284 SACAVFE---GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
           SA ++F+           +W+T++ GY QNG   EA+E F+ M     +   Q    S+ 
Sbjct: 311 SALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLR-EGVPAGQFILTSVA 369

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A ++ G + QG ++H  V K    FD  +A+ +VDMY K G ++DA  +F      +  
Sbjct: 370 SACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVA 429

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W  ++  +  HGQG  AL  F +M  E + P+ IT V++L+ACSHSGLVS+G  YF++M
Sbjct: 430 LWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLM 489

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           QEE+GI P+ +HY CMVDL+GRAG L  A NFI+   +  +A +W  LL ACR+H ++E 
Sbjct: 490 QEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEY 549

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
             +AS++L +++  + G YVLMSN+YA   KW    ++RS  ++R ++K PG S I + N
Sbjct: 550 AQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKN 609

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
            V  F   + +HP+  +IY  L  L  ++K +GY      V+ D+EE+++E  L  HSE+
Sbjct: 610 VVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEK 669

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LAIAFGIIS+P  + ++IFKNLRVC DCH   KFI++ T+REI+VRD  RFHHFKDG CS
Sbjct: 670 LAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCS 729

Query: 701 CGDYW 705
           C D+W
Sbjct: 730 CEDFW 734



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 212/457 (46%), Gaps = 52/457 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLR-PDFYTFPPVLKACRNLVD---GKKIHCSVLK 56
           +IS   R GR ++ +  F +     G   P+ +    VL+ C  L D   G++IH  +L+
Sbjct: 95  IISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILR 154

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   DV +  ++L MY + G    AR+ F  M  +D+ SWN +I    Q G+ V A  +
Sbjct: 155 SGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQL 214

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNI-----------------------LSGLL--- 150
            DE  L  VS     V+ ++     ++ +                       L+GLL   
Sbjct: 215 FDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSR 274

Query: 151 -----IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ---MMERDVVSWNSII 202
                +H  +V   LE + FV  +L++MY K G M  AL +FD+     E    +W++++
Sbjct: 275 DLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMV 334

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y Q+     A  FF  M + G+      L S+ S  A        R VHGF+ + G  
Sbjct: 335 AGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHR 394

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             D  + +A+VDMY+K G +  AC +F     K+V  W T++  YA +G    A+E+F  
Sbjct: 395 F-DAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSR 453

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQG------IKIHARVIKNCLCFDVFVATCLVD 376
           M +  +I PN+ T V++L A SH G +  G      ++    ++ N   ++     C+VD
Sbjct: 454 M-KAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYN-----CMVD 507

Query: 377 MYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIH 412
           +YG+ G +D A +   +   S  +V W  ++S   +H
Sbjct: 508 LYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLH 544



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 22/334 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPV-----LKACRNLVDGKKIHCSVL 55
           ++S  +R G  +EA+    Q  + +G+    YT+  V     L + R+L  G+++H  V+
Sbjct: 229 IVSGLMRHGHTTEALGRLQQM-VRAGVTFSNYTYSMVFALAGLLSSRDL--GRQLHGRVV 285

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFD---DMPVRDSGSWNAMISGYCQSGNAVE 112
               E D FV  SL+ MYC+ G    A  +FD   D       +W+ M++GY Q+G   E
Sbjct: 286 VAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEE 345

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           AL+    M  EGV      + S+   CA +  +  G  +H ++ K G  F+  +++ +++
Sbjct: 346 ALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVD 405

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           MY+K G +  A R+F     ++V  W +++ +Y        A   F+ M+   I P+ +T
Sbjct: 406 MYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEIT 465

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           LV++ S  +      +       +      + +    N +VD+Y + G+++ A    E  
Sbjct: 466 LVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEEN 525

Query: 293 PVK-DVISWNTLITG--------YAQNGLASEAI 317
            +  + + W TL++         YAQ  LASE +
Sbjct: 526 KISHEAVVWKTLLSACRLHKHIEYAQ--LASEKL 557


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/697 (35%), Positives = 390/697 (55%), Gaps = 30/697 (4%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           + P+L  C     L   + +H  ++K G   D+FVA SL+++Y R   +  AR+LFD MP
Sbjct: 79  YVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMP 138

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            ++  +W A+I+G+  +     AL++  EM   G      T+  +L  C+ +  I  G  
Sbjct: 139 DKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQ 198

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA-YEQSN 209
           +H Y +K+G +    + N+L  +Y K G +   LR F    +++V++W ++I++  E  N
Sbjct: 199 VHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDEN 258

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
                   F  M + G+ P+  TL S+ S+     D    + V  F  + G    ++ + 
Sbjct: 259 YLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGC-EANLPVK 317

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----------NGLASEAIE 318
           N+ + +Y + G  + A  +FE +    +I+WN +I+GYAQ                +A++
Sbjct: 318 NSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALK 377

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           +F+ +   +E+ P+  T+ SIL   S + AL QG +IHA  IK     DV V + LV+MY
Sbjct: 378 LFRDLVR-SELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMY 436

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG I+ A   F ++P  + V W ++IS +  HG+   A+  F  M+  G RP+ ITFV
Sbjct: 437 NKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFV 496

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           SLL+ACS++GLV E +RYF MM+ E+ I+P + HYGCMVD+F R G L  A +FI+    
Sbjct: 497 SLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGF 556

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P+ +IW +L+  CR HGNMEL   A+DRL E+  + +  YVL+ N+Y + G+W  V  V
Sbjct: 557 EPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARV 616

Query: 559 RSLAR--DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
           R LA+  D G+ +   W  I + +KV  F   + THP+  ++Y  L NL  K K++GY P
Sbjct: 617 RKLAKHEDVGVLRDRSW--IAIRDKVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEP 674

Query: 617 --DKSFVLQDVEEDEKEH-------ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
             +   +L D +E + +        ++  HSERLA+A G++ +PP + +++ KN+ +C D
Sbjct: 675 YQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRD 734

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           CH+  K+ S +  REI+VRDS R H FKDG CSCGD+
Sbjct: 735 CHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 771



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 211/450 (46%), Gaps = 22/450 (4%)

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSD 143
           FD        S  A+ +G  +  +    LD  + M +  +G ++       +L  C  + 
Sbjct: 31  FDKGTSYQRSSAQALENGRLEHESPPRPLDAQEAMGMLRDGQTVQSAMYVPLLHRCVEAG 90

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            + +   +H ++VK G   ++FV+ +L+N+Y +    R A R+FD M +++VV+W ++I 
Sbjct: 91  GLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALIT 150

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            +  +++P  A   F  M + G  P   TL  + S  +        + VHG+ ++ G   
Sbjct: 151 GHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYG--- 207

Query: 264 EDVI--IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN-GLASEAIEVF 320
            D I  +GN++  +Y K G + S    F+G P K+VI+W T+I+  A++       + +F
Sbjct: 208 ADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLF 267

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
             M E   + PN+ T  S++        +  G ++ A   K     ++ V    + +Y +
Sbjct: 268 LDMLE-GGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLR 326

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHG---------IHG--QGDKALNFFRQMLDEG 429
            G  D+AM LF ++  SS + WNA+IS +          +H   +G +AL  FR ++   
Sbjct: 327 KGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSE 386

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PD  TF S+L+ CS    + +G++  H    + G    +     +V+++ + G +  A
Sbjct: 387 LKPDLFTFSSILSVCSAMMALEQGEQ-IHANTIKTGCLSDVVVNSALVNMYNKCGSIECA 445

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNME 519
                 MP R   + W +++     HG  +
Sbjct: 446 TKAFVEMPTRTPVT-WTSMISGYSQHGRSQ 474



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 25  SGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           S L+PD +TF  +L  C  ++    G++IH + +K G   DV V ++L++MY + G    
Sbjct: 385 SELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIEC 444

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A K F +MP R   +W +MISGY Q G + +A+ + ++M L G   + IT  S+L  C+ 
Sbjct: 445 ATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSY 504

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNN--LINMYAKFGMMRHALRVFDQM-MERDVVSW 198
           +  ++     +  ++++       V +   +++M+ + G +  A     +   E +   W
Sbjct: 505 A-GLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIW 563

Query: 199 NSIIA 203
           +S++A
Sbjct: 564 SSLVA 568


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/707 (35%), Positives = 377/707 (53%), Gaps = 20/707 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G+L EA D F +    + +    +++  + +AC   R+L DG+ IH  + +        +
Sbjct: 66  GKLKEAHD-FLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSI 124

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              LL MYC  G     +K+FD+M +++  SW  +IS Y ++G   +A+ +  +M+  G+
Sbjct: 125 ENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +     S+L  C     +  G  IH ++++  L  N+ V   + NMY + G +  A  
Sbjct: 185 RPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKL 244

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VFD M  ++ V+W  ++  Y Q+     A   F  M   G++ D      +  +   L D
Sbjct: 245 VFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLED 304

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R +H  I++ G   E V +G  +VD Y K G I SA   F  +   + +SW+ LI+
Sbjct: 305 WDMGRQIHSHIVKLGAESE-VSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALIS 363

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           G++Q+G   + I++F  +     +  N   Y S+  A +    L  G + H   IK  L 
Sbjct: 364 GFSQSGRLEDCIKIFTSLRS-EGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             ++  + +V MY KCGR+D A   F  +    +V W AIIS +  HG   +AL FFR+M
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
              GVRP+ +TF+++LTACSHSGLV+E ++Y   M  ++G+KP + HY CM+D + RAG 
Sbjct: 483 QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGL 542

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           L  A   I  MP  PDA  W +LLG C  H +++LG +A++ LF +D  +   Y+L+ N+
Sbjct: 543 LQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNL 602

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
           Y+  GKWE    VR L  +R LKK    S I V  +V  F  G+R HP+ E IY +L   
Sbjct: 603 YSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEF 662

Query: 606 TAKMKSLGYVPDKSFVLQDVEED-------EKEHILTSHSERLAIAFGIISSPPKSPIQI 658
                    V D    L + E+D        KE +L  HSE+LAIAFG+IS+   +PI +
Sbjct: 663 KCS------VIDSPVRLLNEEDDVSCSLSARKEQLL-DHSEKLAIAFGLISTEDNAPILV 715

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FKNLR C DCH + K +S +T R+I+VRDS RFHHFK G CSC DYW
Sbjct: 716 FKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 216/467 (46%), Gaps = 6/467 (1%)

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           + G   EA D L EM    VS+ P +   +   C +  ++  G LIH  + +     +  
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           + N L+ MY   G      +VFD+M+ +++VSW  +I+AY ++ +   A   F+ MQ +G
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           I+P+    +SL       +     + +H  ++ R     ++ +  A+ +MY + G +  A
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVI-RAQLNANITVETAICNMYVRCGWLEGA 242

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF+G+  ++ ++W  L+ GY Q      A+E+F  M     +  ++  +  +L     
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARM-AMEGVELDEFVFSIVLKVCCG 301

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +     G +IH+ ++K     +V V T LVD Y KCG I+ A   F ++   + V W+A+
Sbjct: 302 LEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSAL 361

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           IS     G+ +  +  F  +  EGV  +   + S+  AC+    ++ G +  H    + G
Sbjct: 362 ISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQA-HGDAIKRG 420

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM--ELGAV 523
           +  +L     MV ++ + G L  A    +++   PDA  W A++     HGN    LG  
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGFF 479

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
              + + V    V +  +++    +    E    + S++RD G+K T
Sbjct: 480 RRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPT 526


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/529 (43%), Positives = 339/529 (64%), Gaps = 17/529 (3%)

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM---------QQAGIQPDLLTLVSL 236
           +FD++ +R VVSW SIIA   Q++    A   F  +          + G+  D + L  +
Sbjct: 35  LFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGCV 94

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  ++L     +  VHG +++RG F   V +GN ++D YAK G +  A  VF+G+   D
Sbjct: 95  VSAFSKLGWRGVTEGVHGLVIKRG-FERCVGVGNTLMDAYAKFGEMGVA-KVFDGMNESD 152

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
              WN++I  YAQNGL++EA  VF  M     +      Y +++      GAL+ G  IH
Sbjct: 153 HYFWNSVIAEYAQNGLSAEAFSVFGDM-----VKSGNFRYNAVIMDXGLSGALQLGKCIH 207

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            +VIK  L   VFV T +VD+Y KC R++ A   F  +   +   W A+++ +G+HG+  
Sbjct: 208 HQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAK 267

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A+  F +M+  GV+P++ITFVS+L ACSH+G++ EG  +F+ M+ EF ++P ++HY CM
Sbjct: 268 EAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCM 327

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GRAG+L   +  I+ M  +PD  IWG+LLGACRIH N+ELG +++ +LFE+D  N 
Sbjct: 328 VDLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNC 386

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL+SNIYA+ G+W+ V+ +R L + RGL K PG+S +E+  ++ +   G++ HP++E
Sbjct: 387 GYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHE 446

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           KIY+ L     K++ LGY+P+ + VL DV+E+EK  +L  HSE+LA+AFGI++S P S I
Sbjct: 447 KIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSII 506

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I KNLR+CGDC+   K I ++  REI+VRDS RFHHFK+G CSCGDYW
Sbjct: 507 HIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 172/350 (49%), Gaps = 27/350 (7%)

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV----SMDPITVA 133
             N +R LFD++P R   SW ++I+G  Q+  A +A+ +  E+ +E      S D + V 
Sbjct: 28  FGNDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVD 87

Query: 134 SILPVCARS-------DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           S+L  C  S         +  G  +H  ++K G E  + V N L++ YAKFG M  A +V
Sbjct: 88  SVLLGCVVSAFSKLGWRGVTEG--VHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KV 144

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLND 245
           FD M E D   WNS+IA Y Q+     A   F  M ++G  + + + +    S   QL  
Sbjct: 145 FDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGK 204

Query: 246 CRNSRSVHGFIMRRGWFMED-VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           C     +H  +++    +ED V +G ++VD+Y K   +  A   F+ + VK+V SW  ++
Sbjct: 205 C-----IHHQVIKMD--LEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMV 257

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GY  +G A EA+E+F  M     + PN  T+VS+L A SH G L++G     R +K   
Sbjct: 258 AGYGMHGRAKEAMEIFYKMIRSG-VKPNYITFVSVLAACSHAGMLKEGXHWFNR-MKCEF 315

Query: 365 CFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +  +    C+VD+ G+ G +     +     +   + W +++    IH
Sbjct: 316 IVEPGIEHYLCMVDLLGRAGYLXCYGLIKEMNAKPDFIIWGSLLGACRIH 365



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 11/265 (4%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R + +G  +H  V+K GFE  V V  +L+  Y +FG   VA K+FD M   D   WN++I
Sbjct: 104 RGVTEG--VHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGMNESDHYFWNSVI 160

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           + Y Q+G + EA  +  +M    V        +++     S  +  G  IH  ++K  LE
Sbjct: 161 AEYAQNGLSAEAFSVFGDM----VKSGNFRYNAVIMDXGLSGALQLGKCIHHQVIKMDLE 216

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV  +++++Y K   +  A + FD M  ++V SW +++A Y        A   F  M
Sbjct: 217 DSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKM 276

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN--AVVDMYAKL 279
            ++G++P+ +T VS+ +  +     +     H F   +  F+ +  I +   +VD+  + 
Sbjct: 277 IRSGVKPNYITFVSVLAACSHAGMLK--EGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRA 334

Query: 280 GIINSACAVFEGLPVKDVISWNTLI 304
           G +     + E     D I W +L+
Sbjct: 335 GYLXCYGLIKEMNAKPDFIIWGSLL 359



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +I+ Y + G  +EA   F     +   R +       L     L  GK IH  V+K+  E
Sbjct: 159 VIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQL--GKCIHHQVIKMDLE 216

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
             VFV  S++ +YC+     +ARK FD M V++  SW AM++GY   G A EA++I  +M
Sbjct: 217 DSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKM 276

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLINMYA 175
              GV  + IT  S+L  C+ +  +  G      +   +IV+ G+E  L     ++++  
Sbjct: 277 IRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLC----MVDLLG 332

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           + G +     + +   + D + W S++ A
Sbjct: 333 RAGYLXCYGLIKEMNAKPDFIIWGSLLGA 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 23/246 (9%)

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ--MMEECNEINPNQGTYVS-- 338
           N +  +F+ +P + V+SW ++I G  QN  A +A+ VF+  ++EE   +    G +V   
Sbjct: 30  NDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSV 89

Query: 339 ----ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
               ++ A+S +G       +H  VIK      V V   L+D Y K G +  A  +F  +
Sbjct: 90  LLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGM 148

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
             S    WN++I+ +  +G   +A + F  M+  G    +  + +++     SG +  G+
Sbjct: 149 NESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSG----NFRYNAVIMDXGLSGALQLGK 204

Query: 455 RYFHMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
              H +     IK  L+        +VD++ +   + MA      M V+   S W A++ 
Sbjct: 205 CIHHQV-----IKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKS-WTAMVA 258

Query: 511 ACRIHG 516
              +HG
Sbjct: 259 GYGMHG 264


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/623 (36%), Positives = 358/623 (57%), Gaps = 15/623 (2%)

Query: 93  DSGSWNAMISG-------YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
            +GS + + SG       +C   N   +L      R++   +D   ++  L +CA+  ++
Sbjct: 14  STGSLSVLCSGIYLAARSFCNKLNHSSSLKDRRLARIDRNLIDVSAISQRLQLCAKRKSL 73

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           L G   H   +  GL  +    N LIN+Y K G    A  VFD M  R +VSWN++IA Y
Sbjct: 74  LVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGY 133

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ---LNDCRNSRSVHGFIMRRGWF 262
             S + + A   F+ M + G      TL S     A    +N+C+    +H   ++    
Sbjct: 134 THSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQ---LHTIALKLA-L 189

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +  +G A++D+YAK  +I  AC VFE +P + +++W++L  GY QNGL  EA+ +F+ 
Sbjct: 190 DSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRC 249

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
            +    +   + T  +IL A + +    +GI++HA ++K     + FVA  LVD+Y +CG
Sbjct: 250 AQR-EGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCG 308

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           +I+ A +LF  +   + V WNA+I+    H    +A+  F +M   G+ P+ +T++S+L+
Sbjct: 309 QIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLS 368

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
            CSH+GLV +G+ YF ++  +  ++P++ HY CMVD+ GR+G    A   +  MP  P A
Sbjct: 369 VCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTA 428

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           S+WG+LLG+CR + N+ L  +A+++LF+++ +N G +VL+SN+YA  G WE V   R   
Sbjct: 429 SMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYL 488

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           +D G KK  G S IE   KV +F  G R HP+   IY++L  +  +M+           L
Sbjct: 489 KDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDL 548

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            DV  ++KE +L  HSE+LA++FG+IS P   PI I KNLR+CGDCH++ K  + ITER 
Sbjct: 549 HDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERL 608

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           +IVRD+NRFHHFKDG CSCGD+W
Sbjct: 609 VIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 199/370 (53%), Gaps = 5/370 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           ++L+ GK  H   +  G   D      L+++Y + G  + AR +FD M VR   SWN MI
Sbjct: 71  KSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMI 130

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           +GY  SG  V+AL +   M  EG  M   T++S +  CA    I     +H   +K  L+
Sbjct: 131 AGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALD 190

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N FV   ++++YAK  M++ A  VF++M ER +V+W+S+ A Y Q+     A   F   
Sbjct: 191 SNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCA 250

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q+ G++    TL ++ S  A L        +H  I++ G F  +  +  ++VD+YA+ G 
Sbjct: 251 QREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCG-FHGNFFVAASLVDVYARCGQ 309

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  A A+F  +  K+V+ WN +I  ++++  + EA+ +F+ M++   I PN+ TY+S+L 
Sbjct: 310 IEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLG-IFPNEVTYLSVLS 368

Query: 342 AYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS 399
             SH G + +G    + ++ +  +  +V   +C+VD+ G+ G+ D+A  L  ++P   ++
Sbjct: 369 VCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTA 428

Query: 400 VPWNAII-SC 408
             W +++ SC
Sbjct: 429 SMWGSLLGSC 438



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 15/355 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI+ Y   G   +A+  F +     G     +T    + AC     + + K++H   LKL
Sbjct: 129 MIAGYTHSGEDVQALKLFSRMH-REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKL 187

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + + FV  ++L +Y +  +   A  +F+ MP R   +W+++ +GY Q+G   EAL + 
Sbjct: 188 ALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLF 247

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              + EGV +   T+++IL  CA     + G+ +H  I+K G   N FV+ +L+++YA+ 
Sbjct: 248 RCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARC 307

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F  M  ++VV WN++IA++ +      A   F  MQQ GI P+ +T +S+ 
Sbjct: 308 GQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVL 367

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S+ +        R     +M       +V+  + +VD+  + G  + A  +   +P +  
Sbjct: 368 SVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPT 427

Query: 298 IS-WNTLI---TGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPAYSHVG 347
            S W +L+     Y    LA  A E +FQ+  +      N G +V +   Y+  G
Sbjct: 428 ASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPD------NGGNHVLLSNVYAASG 476


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/512 (43%), Positives = 318/512 (62%), Gaps = 2/512 (0%)

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D VSWNS+I    +      A  FF  M+   ++ D  TL S+ +  A +   +N+ SVH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             I++ G F    ++ NA++DMYAK G ++ A  VF  +  KDV+SW +L+TGY+ NG  
Sbjct: 65  CLIIKTG-FEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSY 123

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EAI++F  M   + + P+Q    S+L A + +  +  G +IHA ++K+ L   + V   
Sbjct: 124 EEAIKLFCKMR-ISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNS 182

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           LV MY KCG I DA   F  +P    + W A+I  +  +G+G  +L F+ QM+  G +PD
Sbjct: 183 LVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPD 242

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
           +ITF+ LL ACSH+GL+  G+ YF  M + +GIKP  +HY CM+DL GR+G L  A   +
Sbjct: 243 YITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLL 302

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
             M V PDA +W ALL ACR+H  +ELG +A+  LFE++  N   YV++SN+Y+  GKWE
Sbjct: 303 NQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWE 362

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
               +R L R RG+ K PG+S IE N+KV  F + +R HP   +IY ++  +   +K  G
Sbjct: 363 DAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAG 422

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           YVPD SF L D +++ KE  L  HSE+LA+AFG+++ P  +PI+IFKNLRVCGDCH   K
Sbjct: 423 YVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMK 482

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + S++  R II+RDSN FHHF +G CSCGDYW
Sbjct: 483 YTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 10/331 (3%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           M   D  SWN++I G  + G   +AL    +MR   + +D  T+ S+L   A    + + 
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           + +H  I+K G E    V+N LI+MYAK G +  A+ VF +M+++DVVSW S++  Y  +
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A   F  M+ +G+ PD + + S+ S  A+L      + +H  +++ G     + +
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSG-LESSLSV 179

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N++V MYAK G I  A   F+ +P +DVISW  LI GYAQNG    +++ +  M     
Sbjct: 180 DNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATG- 238

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRI 384
             P+  T++ +L A SH G L  G      + K    + +        C++D+ G+ G++
Sbjct: 239 TKPDYITFIGLLFACSHNGLLGSGRAYFEAMDK---VYGIKPGPEHYACMIDLLGRSGKL 295

Query: 385 DDAMSLFYQ-VPRSSSVPWNAIISCHGIHGQ 414
            +A  L  Q V    +V W A+++   +H +
Sbjct: 296 AEAKGLLNQMVVAPDAVVWKALLAACRVHKE 326



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 4/234 (1%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWD 62
           VR G   +A+  F+Q   +  ++ D YT P VL +    + + +   +HC ++K GFE  
Sbjct: 17  VREGFEEDALS-FFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAY 75

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
             V  +L+ MY + G  + A  +F  M  +D  SW ++++GY  +G+  EA+ +  +MR+
Sbjct: 76  KLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRI 135

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
            GV  D I VAS+L  CA    +  G  IH  +VK GLE +L V N+L+ MYAK G +  
Sbjct: 136 SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVD 195

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           A R FD M  RDV+SW ++I  Y Q+     +  F+  M   G +PD +T + L
Sbjct: 196 ANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGL 249



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ Y   G   EA+  F +  + SG+ PD      VL AC  L     G++IH +++K 
Sbjct: 113 LVTGYSHNGSYEEAIKLFCKMRI-SGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS 171

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E  + V  SL+ MY + G    A + FD+MP RD  SW A+I GY Q+G    +L   
Sbjct: 172 GLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFY 231

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-----LLIHLYIVKHGLEFNLFVSNNLIN 172
           D+M   G   D IT   +L  C+ +  + SG      +  +Y +K G E        +I+
Sbjct: 232 DQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYAC----MID 287

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +  + G +  A  + +QM +  D V W +++AA
Sbjct: 288 LLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/683 (36%), Positives = 378/683 (55%), Gaps = 76/683 (11%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+  + A     Y   G  N ARKLF + P+R   +W+++ISGYC+ G  VEAL++  EM
Sbjct: 75  WNTMIGA-----YANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEM 129

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + EG   +  T  S+L VC+    +  G  IH + +K   + N FV   L++MYAK   +
Sbjct: 130 QYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCI 189

Query: 181 RHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
             A  +F+   + R+ V W +++  Y Q+ D   A   F  M+  GI+ +  T  S+ + 
Sbjct: 190 LEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTA 249

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
              ++ C     VHG I+R G F  +V +G+A+VDMY+K G +++A  + E + V D +S
Sbjct: 250 CGSISACGFGAQVHGCIVRSG-FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS 308

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           WN++I G  + GL  EA+ +F++M     +  ++ TY S+                    
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMH-LRHMKIDEFTYPSL-------------------- 347

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
                     V   LVDMY K G  D A  +F ++     + W ++++    +G  ++AL
Sbjct: 348 ----------VNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEAL 397

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVS---------------------------- 451
             F +M   G+ PD I   ++L+A  +S LVS                            
Sbjct: 398 RLFCEMRIMGIHPDQIVIAAVLSALDNS-LVSMYAKCGCIEDANKVFDSMEIQDVITWTA 456

Query: 452 ---------EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
                     G+ YF  M+E +GIKP  +HY CM+DL GR+G L  A   +  M V+PDA
Sbjct: 457 LIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDA 516

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
           ++W ALL ACR+HGN+ELG  A++ LFE++ +N   YVL+SN+Y+  GKWE   + R L 
Sbjct: 517 TVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLM 576

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL 622
           + RG+ K PG S IE+++KV  F + +R+HP+  +IY ++  +   +K  GYVPD +F L
Sbjct: 577 KLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFAL 636

Query: 623 QDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            D++E+ KE  L  HSE+LA+AFG+++ PP +PI+IFKNLR+CGDCH   K++S +  R 
Sbjct: 637 HDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRH 696

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           +I+RDSN FHHF++G CSC DYW
Sbjct: 697 VILRDSNCFHHFREGACSCSDYW 719



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 203/468 (43%), Gaps = 108/468 (23%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ Y + G   +A++CF       G+  + +TFP +L AC ++     G ++H  +++ 
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMR-GEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS 269

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +VFV ++L+ MY + G  + AR++ + M V D  SWN+MI G  + G   EAL + 
Sbjct: 270 GFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLF 329

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M L  + +D  T  S+                              V+N L++MYAK 
Sbjct: 330 RIMHLRHMKIDEFTYPSL------------------------------VNNALVDMYAKR 359

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G   +A  VF++M ++DV+SW S++     +     A   F  M+  GI PD + + ++ 
Sbjct: 360 GYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVL 419

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S                             + N++V MYAK G I  A  VF+ + ++DV
Sbjct: 420 S----------------------------ALDNSLVSMYAKCGCIEDANKVFDSMEIQDV 451

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+W  LI GYAQNG      + FQ MEE   I P    Y                     
Sbjct: 452 ITWTALIVGYAQNGRGR---DYFQSMEEVYGIKPGPEHY--------------------- 487

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ-- 414
                          C++D+ G+ G++ +A  L  Q+  +  +  W A+++   +HG   
Sbjct: 488 --------------ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVE 533

Query: 415 -GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
            G++A N   ++  +   P    +V L    S +G   E  +   +M+
Sbjct: 534 LGERAANNLFELEPKNAVP----YVLLSNLYSAAGKWEEAAKTRRLMK 577



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 171/390 (43%), Gaps = 63/390 (16%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI------------------------- 304
           N V+   +K G ++ A  +F+ +P +D  SWNT+I                         
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 305 ------TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
                 +GY + G   EA+E+F  M+   E  PNQ T+ S+L   S    L +G +IHA 
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGE-RPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
            IK     + FV T LVDMY KC  I +A  LF   P + + V W A+++ +  +G G K
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCM 476
           A+  FR M  EG+  +  TF S+LTAC        G Q +  +++  FG    +     +
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVG--SAL 281

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG----NMELGAVASDRLFEVD 532
           VD++ + G L  A   ++ M V  D   W +++  C   G     + L  +   R  ++D
Sbjct: 282 VDMYSKCGDLSNARRMLETMEV-DDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKID 340

Query: 533 SENVGYYVLMSN----IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
                Y  L++N    +YA  G ++   +V     D   K    W+S+          TG
Sbjct: 341 --EFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTD---KDVISWTSL---------VTG 386

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
              +  YE    E   L  +M+ +G  PD+
Sbjct: 387 CVHNGSYE----EALRLFCEMRIMGIHPDQ 412


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/656 (35%), Positives = 370/656 (56%), Gaps = 2/656 (0%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
           +H    KLG + + FV + L+  Y    L + A  +F+ +  +D+  W AM+S Y ++  
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
              A  +  +MR+ G   +P  + S+L       +++ G  IH   +K   +    V   
Sbjct: 244 PENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGA 303

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           L++MYAK G ++ A   F+ +   DV+  + +I+ Y QSN    A   F  + ++ + P+
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 363

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             +L S+      +      + +H   ++ G    D+ +GNA++D YAK   ++S+  +F
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             L   + +SWNT++ G++Q+GL  EA+ VF  M+   ++   Q TY S+L A +   ++
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAA-QMPCTQVTYSSVLRACASTASI 481

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
           R   +IH  + K+    D  +   L+D Y KCG I DA+ +F  +     + WNAIIS +
Sbjct: 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 541

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +HGQ   AL  F +M    V  + ITFV+LL+ CS +GLV+ G   F  M+ + GIKP 
Sbjct: 542 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HY C+V L GRAG L  A  FI ++P  P A +W ALL +C IH N+ LG  +++++ 
Sbjct: 602 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKIL 661

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           E++ ++   YVL+SN+YA  G  + V  +R   R+ G++K PG S +E+  ++  F  G+
Sbjct: 662 EIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGS 721

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
             HP    I   L  L  K    GY+PD + VL DV++++K  +L  HSERLA+A+G++ 
Sbjct: 722 VDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVM 781

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +PP  PI+I KNLR C DCH     IS+I +REIIVRD NRFHHF+DG CSCGDYW
Sbjct: 782 TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 260/531 (48%), Gaps = 14/531 (2%)

Query: 47  GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           G+ +H  V++ G     D+F A  LL+MY + G    AR+LFD MP R+  S+  ++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            Q G+   A  +   +R EG  ++   + ++L +    D       +H    K G + N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV + LI+ Y+   ++  A  VF+ ++ +D V W ++++ Y +++ P  A   F+ M+ +
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVS 257

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI--IGNAVVDMYAKLGII 282
           G +P+   L S+      L      + +HG  ++    + D    +G A++DMYAK G I
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT---LNDTEPHVGGALLDMYAKCGDI 314

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             A   FE +P  DVI  + +I+ YAQ+    +A E+F  +   + + PN+ +  S+L A
Sbjct: 315 KDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR-SSVLPNEYSLSSVLQA 373

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            +++  L  G +IH   IK     D+FV   L+D Y KC  +D ++ +F  +  ++ V W
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE-GQRYFHMMQ 461
           N I+      G G++AL+ F +M    +    +T+ S+L AC+ +  +   GQ +  + +
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
             F     + +   ++D + + G++  A    Q++  R D   W A++    +HG     
Sbjct: 494 STFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHLMER-DIISWNAIISGYALHGQAADA 550

Query: 522 AVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
               DR+ +  V+S ++ +  L+S   +      G+    S+  D G+K +
Sbjct: 551 LELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 217/423 (51%), Gaps = 10/423 (2%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
            SG +P+ +    VLKA     ++V GK IH   +K   + +  V  +LL MY + G   
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 315

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            AR  F+ +P  D    + MIS Y QS    +A ++   +    V  +  +++S+L  C 
Sbjct: 316 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 375

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
               +  G  IH + +K G E +LFV N L++ YAK   M  +L++F  + + + VSWN+
Sbjct: 376 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 435

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           I+  + QS     A   F  MQ A +    +T  S+    A     R++  +H  I  + 
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI-EKS 494

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F  D +IGN+++D YAK G I  A  VF+ L  +D+ISWN +I+GYA +G A++A+E+F
Sbjct: 495 TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELF 554

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYG 379
             M + N +  N  T+V++L   S  G +  G+ +   + I + +   +   TC+V + G
Sbjct: 555 DRMNKSN-VESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLG 613

Query: 380 KCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITF 437
           + GR++DA+     +P + S++ W A++S   IH   + AL  F       + P D  T+
Sbjct: 614 RAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTY 671

Query: 438 VSL 440
           V L
Sbjct: 672 VLL 674



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 176/356 (49%), Gaps = 9/356 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y +  +  +A + F +   +S L P+ Y+   VL+AC N+V    GK+IH   +K+
Sbjct: 335 MISRYAQSNQNEQAFELFLRLMRSSVL-PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D+FV  +L+  Y +    + + K+F  +   +  SWN ++ G+ QSG   EAL + 
Sbjct: 394 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 453

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+   +    +T +S+L  CA + +I     IH  I K     +  + N+LI+ YAK 
Sbjct: 454 CEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKC 513

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R AL+VF  +MERD++SWN+II+ Y        A   F  M ++ ++ + +T V+L 
Sbjct: 514 GYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALL 573

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKD 296
           S+ +      +  S+   +         +     +V +  + G +N A      +P    
Sbjct: 574 SVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPS 633

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQ 351
            + W  L++    +   + A+  F   E+  EI P ++ TYV +   Y+  G+L Q
Sbjct: 634 AMVWRALLSSCIIH--KNVALGRFS-AEKILEIEPQDETTYVLLSNMYAAAGSLDQ 686



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 166/358 (46%), Gaps = 18/358 (5%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHAL 184
           +D    A  L  C    +   G  +H ++V+ G     +LF +N L+NMY K G +  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           R+FD+M ER++VS+ +++ A+ Q  D   A   F  ++  G + +   L ++  +   ++
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
               +  VH    + G    +  +G+ ++D Y+   +++ A  VF G+  KD + W  ++
Sbjct: 177 AAGLAGGVHSCAWKLG-HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           + Y++N     A  VF  M   +   PN     S+L A   + ++  G  IH   IK   
Sbjct: 236 SCYSENDCPENAFRVFSKM-RVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN 294

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             +  V   L+DMY KCG I DA   F  +P    +  + +IS +    Q ++A   F +
Sbjct: 295 DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLR 354

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG--IKPHLKHYGCMVDLF 480
           ++   V P+  +  S+L AC+            +M+Q +FG  I  H    G   DLF
Sbjct: 355 LMRSSVLPNEYSLSSVLQACT------------NMVQLDFGKQIHNHAIKIGHESDLF 400


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/626 (37%), Positives = 374/626 (59%), Gaps = 49/626 (7%)

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN--M 173
           IL  +RL+    +P  V  +L  C+ + ++    +IH ++++  L F++F ++ LI   +
Sbjct: 10  ILKTLRLK----NPKLV--LLECCSNARDLK---IIHAHMLRTHLFFDVFAASRLIAFCI 60

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233
            +   ++ +A+RV  Q+   ++  +N++I     S +P  +  ++    + G+ PD +T 
Sbjct: 61  DSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITH 120

Query: 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL- 292
             L    AQL +       HG  ++ G F +D  + N++V MYA +G IN+A +VF+ + 
Sbjct: 121 PFLVKACAQLENAPMGMQTHGQAIKHG-FEQDFYVQNSLVHMYASVGDINAARSVFQRMC 179

Query: 293 ------------------------------PVKDVISWNTLITGYAQNGLASEAIEVFQM 322
                                         P +++++W+T+I+GYA+N    +A+E F+ 
Sbjct: 180 RFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEA 239

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           ++    +  N+   V ++ + +H+GAL  G K H  V++N L  ++ + T +VDMY +CG
Sbjct: 240 LQ-AEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCG 298

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            ++ A+ +F Q+P    + W A+I+   +HG  +KAL +F +M  +G  P  ITF ++LT
Sbjct: 299 NVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLT 358

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACSH+G+V  G   F  M+ + G++P L+HYGCMVDL GRAG L  A  F+  MPV+P+A
Sbjct: 359 ACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNA 418

Query: 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562
            IW ALLGACRIH N+E+G      L E+  E  G+YVL+SNIYA   KW+ V  +R + 
Sbjct: 419 PIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMM 478

Query: 563 RDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP---KYEKIYDELRNLTAKMKSLGYVPDKS 619
           +D+G++K PG+S IE++ KV  F  G++THP   K E+I++++  +  K+K  GYV + +
Sbjct: 479 KDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDI--ILPKIKLAGYVGNTA 536

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
             + D++E+EKE  L  HSE+LAIA+GI+     +PI+I KNLRVC DCH  TK IS++ 
Sbjct: 537 ETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVF 596

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
           E E+IVRD NRFHHFK+G CSC DYW
Sbjct: 597 EVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 191/412 (46%), Gaps = 39/412 (9%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV---ARKLFDDMPVRD 93
           +L+ C N  D K IH  +L+    +DVF AAS L  +C     N+   A ++   +   +
Sbjct: 23  LLECCSNARDLKIIHAHMLRTHLFFDVF-AASRLIAFCIDSTTNLLHYAIRVASQIQNPN 81

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              +NA+I G   S N   +     +    G+  D IT   ++  CA+ +N   G+  H 
Sbjct: 82  LFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHG 141

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             +KHG E + +V N+L++MYA  G +  A  VF +M   DVVSW  +IA Y +  D  +
Sbjct: 142 QAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKS 201

Query: 214 AHGFFTTM-------------------------------QQAGIQPDLLTLVSLTSIVAQ 242
           A   F  M                               Q  G+  +   +V + S  A 
Sbjct: 202 ARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAH 261

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           L         H ++MR    + ++I+G AVVDMYA+ G +  A  VFE LP KDV+ W  
Sbjct: 262 LGALAMGEKAHEYVMRNKLSL-NLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTA 320

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           LI G A +G A +A+  F  M +   + P   T+ ++L A SH G + +G++I   + ++
Sbjct: 321 LIAGLAMHGYAEKALWYFSEMAKKGFV-PRDITFTAVLTACSHAGMVERGLEIFESMKRD 379

Query: 363 -CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
             +   +    C+VD+ G+ G++  A     ++P   + P W A++    IH
Sbjct: 380 HGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 146/322 (45%), Gaps = 35/322 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMY- 73
           +Y   L  GL PD  T P ++KAC  L +   G + H   +K GFE D +V  SL+HMY 
Sbjct: 104 YYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYA 163

Query: 74  ---------------CRF---------------GLANVARKLFDDMPVRDSGSWNAMISG 103
                          CRF               G A  AR+LFD MP R+  +W+ MISG
Sbjct: 164 SVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISG 223

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++    +A++  + ++ EGV  +   +  ++  CA    +  G   H Y++++ L  N
Sbjct: 224 YARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLN 283

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L +   +++MYA+ G +  A+ VF+Q+ E+DV+ W ++IA          A  +F+ M +
Sbjct: 284 LILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAK 343

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G  P  +T  ++ +  +          +   + R       +     +VD+  + G + 
Sbjct: 344 KGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLR 403

Query: 284 SACAVFEGLPVK-DVISWNTLI 304
            A      +PVK +   W  L+
Sbjct: 404 KAEKFVLKMPVKPNAPIWRALL 425


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 349/576 (60%), Gaps = 9/576 (1%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN---MYAKFGMMRHALRVFDQM 190
           S+LP C     +     +  + +K  L  +L V    IN   +      M+HA  +FDQ+
Sbjct: 25  SLLPKCTSLRELKQ---LQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQI 81

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            + D+V +N++   Y +++ P+ A   FT +  +G+ PD  T  SL    A        R
Sbjct: 82  PQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGR 141

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H   ++ G   E+V +   +++MY     ++ A  VF+ +    V+++N +ITGYA+ 
Sbjct: 142 QLHCLAIKLG-LSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARG 200

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
              +EA+ +F+ ++  N + P   T +S+L + + +GAL  G  +H  V KN     V V
Sbjct: 201 SRPNEALSLFRELQARN-LKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKV 259

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L+DMY KCG +DDA+ +F  +    +  W+A+I  + IHG G KA++ F++M   G 
Sbjct: 260 DTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGT 319

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            PD ITF+ LL ACSH+GLV EG  YF+ M++++G+ P +KHYGCMVDL GRAG L  A+
Sbjct: 320 EPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAY 379

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            FI  +P+RP   +W  LL AC  HGN+ELG    +++FE+D  + G Y+++SN+ A  G
Sbjct: 380 EFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAG 439

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +WE V+ VR L  +RG+ K PG SS+EVNN V  F++G+  H    K++  L  L  ++K
Sbjct: 440 RWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELK 499

Query: 611 SLGYVPDKSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
            +GYVP+ S V   D+E++EKE  L  HSE+LAI FG++++PP + I++ KNLRVCGDCH
Sbjct: 500 LVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCH 559

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  K IS I +R+II+RD  RFHHFKDG CSC DYW
Sbjct: 560 SAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 216/447 (48%), Gaps = 18/447 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV----ARKLFDDMPVR 92
           +L  C +L + K++    +K     D+ V    ++ +C           A  LFD +P  
Sbjct: 26  LLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFIN-FCSLNPTTTSMQHAHHLFDQIPQP 84

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D   +N M  GY ++   + A  +  ++   G+  D  T  S+L  CA    +  G  +H
Sbjct: 85  DIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLH 144

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K GL  N++V   LINMY     M  A RVFD++ E  VV++N++I  Y + + P 
Sbjct: 145 CLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPN 204

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  +Q   ++P  +T++S+ S  A L      + +H ++ + G F   V +  A+
Sbjct: 205 EALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNG-FNRFVKVDTAL 263

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DMYAK G ++ A  VFE + V+D  +W+ +I  YA +G   +A+ +F+ M +     P+
Sbjct: 264 IDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAG-TEPD 322

Query: 333 QGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T++ +L A SH G + +G +  +    K  +   +    C+VD+ G+ GR+++A    
Sbjct: 323 EITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFI 382

Query: 392 YQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHITFVSLLTACSHSG 448
             +P R + + W  ++S  G HG  +       Q+  LD+    D+I   +L   C+ +G
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNL---CARAG 439

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGC 475
              E   Y   +  E G+   +K  GC
Sbjct: 440 R-WEDVNYVRKLMNERGV---VKIPGC 462



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 170/338 (50%), Gaps = 25/338 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKL 57
           M   Y R      A   F Q  L SGL PD YTFP +LKA   C+ L +G+++HC  +KL
Sbjct: 92  MARGYARTDTPLRAFTLFTQI-LFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKL 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V+V  +L++MY      + AR++FD +      ++NAMI+GY +     EAL + 
Sbjct: 151 GLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLF 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E++   +    +T+ S+L  CA    +  G  +H Y+ K+G    + V   LI+MYAK 
Sbjct: 211 RELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKC 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A+ VF+ M  RD  +W+++I AY      + A   F  M++AG +PD +T + L 
Sbjct: 271 GSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGL- 329

Query: 238 SIVAQLNDCRNSRSV-HGFIMRRGWFMED---VIIG----NAVVDMYAKLGIINSACAVF 289
                L  C ++  V  GF    G  M D   VI G      +VD+  + G +  A    
Sbjct: 330 -----LYACSHTGLVEEGFEYFYG--MRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFI 382

Query: 290 EGLPVKDV-ISWNTLITGYAQNG---LASEAIE-VFQM 322
            GLP++   I W TL++    +G   L    IE +F++
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFEL 420


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 364/617 (58%), Gaps = 16/617 (2%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S  WN  +          E++ +   M   G S D  +   IL  CA     +SG  +H 
Sbjct: 18  STPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 77

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS--WNSIIAAYEQSNDP 211
           ++ K G E   FV   LI+MY K G++  A +VF++  +   +S  +N++I+ Y  ++  
Sbjct: 78  HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F  M++ G+  D +T++ L  +          RS+HG  ++ G    +V + N+
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVK-GGLDSEVAVLNS 196

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            + MY K G + +   +F+ +PVK +I+WN +I+GY+QNGLA + +E+++ M+    + P
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSG-VCP 255

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T VS+L + +H+GA + G ++   V  N    +VFV+   + MY +CG +  A ++F
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF 315

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P  S V W A+I C+G+HG G+  L  F  M+  G+RPD   FV +L+ACSHSGL  
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G   F  M+ E+ ++P  +HY C+VDL GRAG L  A  FI++MPV PD ++WGALLGA
Sbjct: 376 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+++  +A  ++ E +  N+GYYVLMSNIY++    EG+  +R + R+R  +K P
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G+S +E   +V +F  G+R+H + E+++  L  L   +  L           +++ D  E
Sbjct: 496 GYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA---------GNMDCDRGE 546

Query: 632 HILTS---HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
            + ++   HSERLAIAFGI++S P + I + KNLRVC DCH + K +S+I +R+ +VRD+
Sbjct: 547 EVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDA 606

Query: 689 NRFHHFKDGICSCGDYW 705
           +RFH+FKDG+CSC DYW
Sbjct: 607 SRFHYFKDGVCSCKDYW 623



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 249/477 (52%), Gaps = 19/477 (3%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAA 67
            SE++   Y+  L SG  PD ++FP +LK+C +L   V G+++HC V K G E + FV  
Sbjct: 34  FSESIS-LYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLT 92

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGS--WNAMISGYCQSGNAVEALDILDEMRLEGV 125
           +L+ MYC+ GL   ARK+F++ P     S  +NA+ISGY  +    +A  +   M+  GV
Sbjct: 93  ALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV 152

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           S+D +T+  ++P+C   + +  G  +H   VK GL+  + V N+ I MY K G +    R
Sbjct: 153 SVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRR 212

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD+M  + +++WN++I+ Y Q+         +  M+ +G+ PD  TLVS+ S  A L  
Sbjct: 213 LFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGA 272

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            +    V   +   G F+ +V + NA + MYA+ G +  A AVF+ +PVK ++SW  +I 
Sbjct: 273 KKIGHEVGKLVESNG-FVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 331

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
            Y  +G+    + +F  M +   I P+   +V +L A SH G   +G+++  R +K    
Sbjct: 332 CYGMHGMGEIGLMLFDDMIK-RGIRPDGAVFVMVLSACSHSGLTDKGLELF-RAMKREYK 389

Query: 366 FDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFF 422
            +      +CLVD+ G+ GR+D+AM     +P       W A++    IH   D A   F
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAF 449

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE--FGIKP---HLKHYG 474
            ++++    P++I +  L++         EG     +M  E  F  KP   +++H G
Sbjct: 450 AKVIE--FEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 504



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 155/315 (49%), Gaps = 19/315 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +IS Y    ++++A   F +   T G+  D  T   ++  C     L  G+ +H   +K 
Sbjct: 127 LISGYTANSKVTDAAYMFRRMKET-GVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG 185

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + +V V  S + MY + G     R+LFD+MPV+   +WNA+ISGY Q+G A + L++ 
Sbjct: 186 GLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELY 245

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           ++M+  GV  DP T+ S+L  CA       G  +   +  +G   N+FVSN  I+MYA+ 
Sbjct: 246 EQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARC 305

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD M  + +VSW ++I  Y            F  M + GI+PD    V + 
Sbjct: 306 GNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVL 365

Query: 238 SIVAQ--LNDCRNSRSVHGF-IMRRGWFMEDVIIG----NAVVDMYAKLGIINSACAVFE 290
           S  +   L D    + +  F  M+R + +E    G    + +VD+  + G ++ A    E
Sbjct: 366 SACSHSGLTD----KGLELFRAMKREYKLEP---GPEHYSCLVDLLGRAGRLDEAMEFIE 418

Query: 291 GLPVK-DVISWNTLI 304
            +PV+ D   W  L+
Sbjct: 419 SMPVEPDGAVWGALL 433


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/575 (40%), Positives = 348/575 (60%), Gaps = 3/575 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +  +L     + ++  GL +H  ++K G E    V ++LIN Y+K  +   +L++FD   
Sbjct: 10  ICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFP 69

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            +   +W+S+I+++ Q++ P+ A  FF  M + G+ PD  TL +    VA L+    + S
Sbjct: 70  HKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALS 129

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H   ++      DV +G+++VD YAK G +N A  VF+ +P K+V+SW+ +I GY+Q G
Sbjct: 130 LHALSLKTA-HHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMG 188

Query: 312 LASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           L  EA+ +F+  +E+  +I  N  T  S+L   S       G ++H    K       FV
Sbjct: 189 LDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFV 248

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           A+ L+ +Y KCG ++    +F +V   +   WNA++     H    +    F +M   GV
Sbjct: 249 ASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGV 308

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +P+ ITF+ LL ACSH+GLV +G+  F +M+E  GI+P  +HY  +VDL GRAG L  A 
Sbjct: 309 KPNFITFLCLLYACSHAGLVEKGEHCFGLMKEH-GIEPGSQHYATLVDLLGRAGKLEEAV 367

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
             I+ MP++P  S+WGALL  CRIHGN EL +  +D++FE+ + + G  VL+SN YA  G
Sbjct: 368 LVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAG 427

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +WE     R + RD+G+KK  G S +E  N+V  F  G+R+H K  +IY++L  L  +M 
Sbjct: 428 RWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMA 487

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             GYV D SFVL++V+ DEK   +  HSERLAIAFG+I+ PP+ PI++ KNLRVCGDCH 
Sbjct: 488 KAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHT 547

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             KFIS+ T R IIVRD+NRFH F+DG C+CGDYW
Sbjct: 548 AIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 210/429 (48%), Gaps = 7/429 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L  G ++H  V+KLGFE    V   L++ Y +  L + + KLFD  P + + +W+++I
Sbjct: 21  RSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           S + Q+   + AL     M   G+  D  T+ +     A   ++   L +H   +K    
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHH 140

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV ++L++ YAK G +  A +VFD+M  ++VVSW+ +I  Y Q      A   F   
Sbjct: 141 HDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRA 200

Query: 222 --QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
             Q   I+ +  TL S+  + +        + VHG   +   F     + ++++ +Y+K 
Sbjct: 201 LEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTS-FDSSCFVASSLISLYSKC 259

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G++     VFE + V+++  WN ++   AQ+       E+F+ ME    + PN  T++ +
Sbjct: 260 GVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVG-VKPNFITFLCL 318

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSS 398
           L A SH G + +G      + ++ +         LVD+ G+ G++++A+ +  ++P + +
Sbjct: 319 LYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPT 378

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
              W A+++   IHG  + A     ++ + G     I  V L  A + +G   E  R   
Sbjct: 379 ESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQ-VLLSNAYAAAGRWEEAARARK 437

Query: 459 MMQEEFGIK 467
           MM+++ GIK
Sbjct: 438 MMRDQ-GIK 445



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 158/319 (49%), Gaps = 19/319 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F++  L  GL PD +T P   K+     +L     +H   LK     DVFV +SL+  Y 
Sbjct: 95  FFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYA 154

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE--GVSMDPITV 132
           + G  N+ARK+FD+MP ++  SW+ MI GY Q G   EAL++      +   + ++  T+
Sbjct: 155 KCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTL 214

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           +S+L VC+ S     G  +H    K   + + FV+++LI++Y+K G++    +VF+++  
Sbjct: 215 SSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKV 274

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R++  WN+++ A  Q          F  M++ G++P+ +T + L    +           
Sbjct: 275 RNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHC 334

Query: 253 HGFIMRRGWFMEDVIIGN----AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG- 306
            G +   G     +  G+     +VD+  + G +  A  V + +P++   S W  L+TG 
Sbjct: 335 FGLMKEHG-----IEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGC 389

Query: 307 --YAQNGLAS-EAIEVFQM 322
             +    LAS  A +VF+M
Sbjct: 390 RIHGNTELASFVADKVFEM 408


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/670 (37%), Positives = 382/670 (57%), Gaps = 6/670 (0%)

Query: 40  ACRNLVDGKKIHCSVLKL-GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           A R+   G+  H   L+L       F+ A L+++Y +  L   A       P     S+ 
Sbjct: 29  ATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYT 88

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVK 157
           A ISG  Q    ++AL     M   G+  +  T  S     A +    + G  +H   ++
Sbjct: 89  AFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALR 148

Query: 158 HG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
            G L  + FVS   ++MY K G +  A R+FD+M  R+VV+WN+++        P+    
Sbjct: 149 FGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVE 208

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            +  ++ AG  P+++++ +  +  A + +       +GF+ + G F +DV + N+VVD Y
Sbjct: 209 AYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCG-FGKDVSVSNSVVDFY 267

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K   +  A AVF+G+ V++ +SW +++  YAQNG   EA  V+       E  P     
Sbjct: 268 GKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGE-EPTDFMV 326

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            S+L   + +  L  G  +HA  +++C+  ++FVA+ LVDMYGKCG I+DA  +F+++P+
Sbjct: 327 SSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQ 386

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
            + V WNA+I  +   G    AL+ F +M + +   P++IT V++LTACS  GL  EG  
Sbjct: 387 RNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYE 446

Query: 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
            F  M+  FGI+P ++HY C+VDL  RAG    A+  IQ MP+RP  S+WGALLG C++H
Sbjct: 447 LFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMH 506

Query: 516 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575
           G  ELG +A+++LFE+D ++ G +VL+SN+ A+ G+W    +VR   ++ G+KK PG S 
Sbjct: 507 GKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSW 566

Query: 576 IEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILT 635
           I   N V +F   + TH    +I   L  L  +M++ GY+PD  + L D+EE+EKE  + 
Sbjct: 567 ITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVF 626

Query: 636 SHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 695
            HSE+LA+AFG+I  PP  PI+I KNLR+C DCH   KFIS I  REIIVRD+N FHHFK
Sbjct: 627 QHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFK 686

Query: 696 DGICSCGDYW 705
           +  CSC DYW
Sbjct: 687 NYECSCKDYW 696



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 210/423 (49%), Gaps = 11/423 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK----ACRNLVDGKKIHCSVLKL 57
           IS   +  R  +A+  F    L  GLRP+ +TFP   K    A      G ++H   L+ 
Sbjct: 91  ISGAAQHARPLQALSAFAAM-LRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRF 149

Query: 58  GF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G+   D FV+ + L MY + G   +AR+LFD+MP R+  +WNA+++     G  +E ++ 
Sbjct: 150 GYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEA 209

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              +R  G   + ++V +    CA   N+  G   + ++ K G   ++ VSN++++ Y K
Sbjct: 210 YFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGK 269

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +  A  VFD M  R+ VSW S++ AY Q+     A   +   ++AG +P    + S+
Sbjct: 270 CRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSV 329

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  A L      R++H  +  R     ++ + +A+VDMY K G I  A  VF  +P ++
Sbjct: 330 LTTCAGLLGLDLGRALHA-VAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRN 388

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +++WN +I GYA  G A  A+ VF  M    E  PN  T V++L A S  G  ++G ++ 
Sbjct: 389 LVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELF 448

Query: 357 ARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHG 413
            + +K     +  +    C+VD+  + G  + A  +   +P   S+  W A++    +HG
Sbjct: 449 -QTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHG 507

Query: 414 QGD 416
           + +
Sbjct: 508 KTE 510



 Score = 40.0 bits (92), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSV-LK 56
           MI  Y   G    A+  F +  +     P++ T   VL AC       +G ++  ++  +
Sbjct: 395 MIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWR 454

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS-WNAMISGYCQSGNAVEALD 115
            G E  +   A ++ + CR G+   A K+   MP+R S S W A++ G C+     E   
Sbjct: 455 FGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGG-CKMHGKTELGR 513

Query: 116 ILDEMRLEGVSMDP 129
           I  E   E   +DP
Sbjct: 514 IAAEKLFE---LDP 524


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/642 (36%), Positives = 371/642 (57%), Gaps = 20/642 (3%)

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138
           A  AR+LFD MP R+  +W A+++GY  +      L++  EM   G      T+ + L  
Sbjct: 89  ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 148

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C  S ++  G  +H Y +K+G E    + N+L ++YAK G +  ALR F ++ E++V++W
Sbjct: 149 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 208

Query: 199 NSIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
            ++I+A  +  + +      F  M   G+ P+  TL S+ S+     D    + V  F  
Sbjct: 209 TTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSF 268

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-------- 309
           + G    ++ + N+ + +Y + G  + A  +FE +    +I+WN +I+GYAQ        
Sbjct: 269 KIGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDD 327

Query: 310 ---NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
                   +A+ +F+ ++  + + P+  T+ SIL   S + AL QG +IHA+ IK+    
Sbjct: 328 LQARSRGFQALTIFRDLKR-SVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLS 386

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           DV V + LV+MY KCG I DA   F ++P  + V W ++IS +  HGQ  +A+  F +M 
Sbjct: 387 DVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMR 446

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             GVRP+ ITFVSLL+ACS++GLV E + YF MM++E+ I+P + HYGCM+D+F R G +
Sbjct: 447 LAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRV 506

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A +FI+     P+ +IW +L+  CR HGNMEL   A+D+L E+  + +  Y+L+ N+Y
Sbjct: 507 EDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMY 566

Query: 547 ANVGKWEGVDEVRSLAR--DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
            +  +W+ V  VR L +  D G+ +   W  I + +KV  F   +RTHP+  ++Y  L N
Sbjct: 567 ISTERWQDVARVRKLMKQEDVGILRDRSW--ITIKDKVYFFRANDRTHPQATELYQLLEN 624

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHI--LTSHSERLAIAFGIISSPPKSPIQIFKNL 662
           L  K K++GY P ++  L D E+DEK     L  HSERLA+A G++ +PP + +++ KN+
Sbjct: 625 LLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNI 684

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
            +C DCH+  K  S +  REIIVRDS R H FKDG CSCGD+
Sbjct: 685 TMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 240/467 (51%), Gaps = 31/467 (6%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L  G  P  YT    L AC    D   GK++H   +K G E    +  SL  +Y + G  
Sbjct: 131 LEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 190

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE-ALDILDEMRLEGVSMDPITVASILPV 138
           + A + F  +P ++  +W  MIS   +    VE  + +  +M ++GV  +  T+ S++ +
Sbjct: 191 DSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSL 250

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C    ++  G  +  +  K G E NL V N+ + +Y + G    A+R+F+QM +  +++W
Sbjct: 251 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 310

Query: 199 NSIIAAYEQ----SNDPITA--HGF-----FTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           N++I+ Y Q    + D + A   GF     F  ++++ ++PDL T  S+ S+ + +    
Sbjct: 311 NAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALE 370

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +H   ++ G F+ DV++ +A+V+MY K G I  A   F  +P +  ++W ++I+GY
Sbjct: 371 QGEQIHAQTIKSG-FLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGY 429

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
           +Q+G   EAI++F+ M     + PN+ T+VS+L A S+ G + +  + +  ++K   C +
Sbjct: 430 SQHGQPQEAIQLFEEMRLAG-VRPNEITFVSLLSACSYAGLVEEA-EHYFDMMKKEYCIE 487

Query: 368 VFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP----WNAIISCHGIHGQGDKALNF 421
             V    C++DM+ + GR++DA S    + R+   P    W+++++    HG  + A   
Sbjct: 488 PVVDHYGCMIDMFVRLGRVEDAFSF---IKRTGFEPNEAIWSSLVAGCRSHGNMELAFYA 544

Query: 422 FRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMM-QEEFGI 466
             ++L+  ++P  I T++ LL     +    +  R   +M QE+ GI
Sbjct: 545 ADKLLE--LKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGI 589


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/559 (42%), Positives = 333/559 (59%), Gaps = 35/559 (6%)

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G + +A  VF+Q+      + NSII  Y   N P  A  F+  M   G+ PD  T  SL 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                L +    + +H    + G F  D  I N +++MY+  G + SA  VF+ +  K V
Sbjct: 86  KSCGVLCE---GKQLHCHSTKLG-FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 141

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMME-------------------------------EC 326
           +SW T+I  YAQ  L  EAI++F+ ME                               + 
Sbjct: 142 VSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQL 201

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           + +  ++ T  S+L A +H+GAL  G  +H  + K  +  DV + T LVDMY KCG I+ 
Sbjct: 202 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           AM +F ++P    + W A+I    + GQG KAL  F +M    V+PD ITFV +L ACSH
Sbjct: 262 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 321

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +GLV+EG  YF+ M  ++GI+P ++HYGCMVD+ GRAG +  A + IQNMP+ PD  +  
Sbjct: 322 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 381

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
            LL ACRIHGN+ +   A+ +L E+D +N G YVL+SNIY+++  WE   ++R L  +R 
Sbjct: 382 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 441

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +KK PG S+IEV   V  F  G+ +HP+  +IY+ L ++  ++KS GYVPDKS VL D++
Sbjct: 442 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMD 501

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E EKE+ L+ HSE+LAIAFG++S+ P +PI++ KNLRVC DCH+  KFIS++  REIIVR
Sbjct: 502 EKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVR 561

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHF  G CSC D+W
Sbjct: 562 DRNRFHHFTKGSCSCRDFW 580



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 171/370 (46%), Gaps = 55/370 (14%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           FYQ  +  GL PD +TFP + K+C  L +GK++HC   KLGF  D ++  +L++MY   G
Sbjct: 65  FYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCG 124

Query: 78  LANVARKLFDDMPVRDSGSW--------------------------------NAMISGYC 105
               ARK+FD M  +   SW                                N MI+G+ 
Sbjct: 125 CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHV 184

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +  +  EAL + +EM+L GV  D +T+AS+L  C     +  G  +H+YI K  +E ++ 
Sbjct: 185 EDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVA 244

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           +   L++MYAK G +  A+RVF +M E+DV++W ++I         + A   F  MQ + 
Sbjct: 245 LGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSE 304

Query: 226 IQPDLLTLVSLTSI----------VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
           ++PD +T V + +           +A  N   N   +   I   G           +VDM
Sbjct: 305 VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG----------CMVDM 354

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQG 334
             + G I  A  + + +P+     +  L+   +   +    +   +  ++  E++P N G
Sbjct: 355 LGRAGRIAEAEDLIQNMPMAP--DYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGG 412

Query: 335 TYVSILPAYS 344
           TYV +   YS
Sbjct: 413 TYVLLSNIYS 422



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 208/456 (45%), Gaps = 49/456 (10%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR +F+ +P   + + N++I GY       +A+     M L+G+  D  T  S+   C  
Sbjct: 31  ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 90

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G  +H +  K G   + ++ N L+NMY+  G +  A +VFD+M+ + VVSW ++
Sbjct: 91  ---LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 147

Query: 202 IAAYEQSNDP----------------------ITAH----------GFFTTMQQAGIQPD 229
           I AY Q + P                      I  H            F  MQ +G++ D
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
            +T+ SL      L      + +H +I +    + DV +G A+VDMYAK G I SA  VF
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEV-DVALGTALVDMYAKCGSIESAMRVF 266

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           + +P KDV++W  LI G A  G   +A+E+F  M + +E+ P+  T+V +L A SH G +
Sbjct: 267 QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM-QMSEVKPDAITFVGVLAACSHAGLV 325

Query: 350 RQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIIS 407
            +GI   ++   K  +   +    C+VDM G+ GRI +A  L   +P +        ++S
Sbjct: 326 NEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLS 385

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              IHG    A    +Q+++  + P +     LL+    S    E  +    +  E  IK
Sbjct: 386 ACRIHGNLVVAERAAQQLIE--LDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 443

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
              K  GC     G     G+ H F++     P +S
Sbjct: 444 ---KPPGCSAIEVG-----GVVHEFVKGDVSHPQSS 471


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 392/710 (55%), Gaps = 8/710 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           ++S+Y   G  S++   F        LR D  T   ++  C +   +  G  +H   L+ 
Sbjct: 217 LVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRT 276

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    + V  +L++MY   G    A  LF +M  RD  SWN MIS Y Q+GN ++AL  L
Sbjct: 277 GLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTL 336

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            ++       D +T +S L  C+    ++ G ++H   ++  L  NL V N+LI MY K 
Sbjct: 337 GQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKC 396

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A R+F  M   DVVS N +I +Y    D   A   F  M++  ++ + +T+V++ 
Sbjct: 397 NSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNIL 456

Query: 238 SIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
                 ND RN    +H + +  G F+ D  + N+++ MYAK G + S+  VF+ +  + 
Sbjct: 457 GSFTSSNDLRNYGLPLHAYTIHAG-FLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRS 515

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           V+SWN +I    Q+G   E++++F  M  + N ++         + + + + +L +G+++
Sbjct: 516 VVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLD--HICLAECMSSSASLASLEEGMQL 573

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H   +K  L  D  V    +DMYGKCG++D+ + +           WN +IS +  +G  
Sbjct: 574 HGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYF 633

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            +A   F+ M+  G  PD++TFV+LL+ACSH+GLV +G  Y++ M   FG+ P +KH  C
Sbjct: 634 KEAEETFKHMISVGRTPDYVTFVTLLSACSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVC 693

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           +VD+ GR G    A  FI++MPV P+  IW +LL + R H N+++G  A+ RL E+D  +
Sbjct: 694 IVDILGRLGRFAEAEKFIEDMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKRLLELDPFD 753

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
              YVL+SN+YA   +W  VD VRS  +   L K P  S ++   +V  F  G+ +H   
Sbjct: 754 DSAYVLLSNLYATSARWSDVDRVRSHMKTINLNKIPACSWLKQKKEVSTFGIGDHSHKHA 813

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           +KIY +L  +  K++ +GYV D S  L D +E++KE  L +HSE+LA+A+G+I+ P    
Sbjct: 814 DKIYMKLDEILLKLREVGYVADTSSALHDTDEEQKEQNLWNHSEKLALAYGLITVPEGCT 873

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++IFKNLRVC DCH   K +S + +REI++RD  RFHHFK G CSC D+W
Sbjct: 874 VRIFKNLRVCADCHLVFKLVSMVFDREIVLRDPYRFHHFKGGSCSCSDFW 923



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/528 (28%), Positives = 261/528 (49%), Gaps = 19/528 (3%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRP-----DFYTFPPVLKACRNLVDGKK----IHC 52
           IS  VRCGR S A      F++  G+R        +    ++ AC    +G+     IH 
Sbjct: 15  ISGCVRCGRDSTA------FSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHA 68

Query: 53  SVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE 112
              K G   +V++  +LLH+Y        A++LF +MP R+  SW A++     +G+  E
Sbjct: 69  LTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEE 128

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           AL     MR E ++ +    A+++ +C   ++ ++GL +  +++  GL+  + V+N+LI+
Sbjct: 129 ALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLIS 188

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLL 231
           M    G +  A ++F +M ERD VSWN++++ Y        +   F+ M++ G ++ D  
Sbjct: 189 MLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDAT 248

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           TL SL S+ A  +       VH   +R G     + + NA+V+MY+  G +  A  +F  
Sbjct: 249 TLCSLISVCASSDYVSYGSGVHSLCLRTG-LHSYIPVVNALVNMYSSAGKLADAEFLFWN 307

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +  +D+ISWNT+I+ Y QNG   +A++    +   NE  P++ T+ S L A S  GAL  
Sbjct: 308 MSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNE-GPDRMTFSSALGACSSPGALMD 366

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G  +HA  ++  L  ++ V   L+ MYGKC  I+DA  +F  +P    V  N +I  + +
Sbjct: 367 GRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAV 426

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
              G KA+  F  M    V+ ++IT V++L + + S  +       H      G      
Sbjct: 427 LEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDY 486

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
               ++ ++ + G L  ++N  Q +  R   S W A++ A   HG+ E
Sbjct: 487 VSNSLITMYAKCGDLESSNNVFQRIINRSVVS-WNAMIAANVQHGHGE 533



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 189/407 (46%), Gaps = 3/407 (0%)

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR-SDNILSGLL 150
           R   SW   ISG  + G    A  +L  MR  GV +    +AS++  C R  +    G  
Sbjct: 6   RTPSSWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAA 65

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH    K GL  N+++   L+++Y     +  A R+F +M ER+VVSW +++ A   +  
Sbjct: 66  IHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGH 125

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A G++  M++  I  +     ++ S+   L D      V   ++  G     V + N
Sbjct: 126 LEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSG-LQRQVSVAN 184

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           +++ M   LG ++ A  +F  +  +D +SWN L++ Y+  GL S++  VF  M     + 
Sbjct: 185 SLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLR 244

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
            +  T  S++   +    +  G  +H+  ++  L   + V   LV+MY   G++ DA  L
Sbjct: 245 HDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFL 304

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F+ + R   + WN +IS +  +G    AL    Q+L     PD +TF S L ACS  G +
Sbjct: 305 FWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGAL 364

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
            +G R  H M  +  +  +L     ++ ++G+   +  A    Q MP
Sbjct: 365 MDG-RMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMP 410


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/636 (37%), Positives = 360/636 (56%), Gaps = 4/636 (0%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY +      AR +    P R+  SW ++ISG  Q+G+   AL    EMR EGV  +  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
                   A     ++G  IH   VK G   ++FV  +  +MY K  +   A ++FD++ 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER++ +WN+ I+       P  A   F   ++    P+ +T  +  +  +          
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG ++R G F  DV + N ++D Y K   I S+  +F  +  K+ +SW +L+  Y QN 
Sbjct: 181 LHGLVLRSG-FDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 239

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              E   V  +    + +  +     S+L A + +  L  G  IHA  +K C+   +FV 
Sbjct: 240 -EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV- 430
           + LVDMYGKCG I+D+   F ++P  + V  N++I  +   GQ D AL  F +M   G  
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 358

Query: 431 -RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             P+++TFVSLL+ACS +G V  G + F  M+  +GI+P  +HY C+VD+ GRAG +  A
Sbjct: 359 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 418

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
           + FI+ MP++P  S+WGAL  ACR+HG  +LG +A++ LF++D ++ G +VL+SN +A  
Sbjct: 419 YEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAA 478

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W   + VR   +  G+KK  G+S I V N+V  F   +R+H   ++I   L  L  +M
Sbjct: 479 GRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 538

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           ++ GY PD    L D+EE+EK   ++ HSE+LA+AFG++S P   PI+I KNLR+CGDCH
Sbjct: 539 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCH 598

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KF+S   +REIIVRD+NRFH FKDGICSC DYW
Sbjct: 599 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 228/464 (49%), Gaps = 36/464 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS   + G  S A+  F++     G+ P+ +TFP   KA  +L   V GK+IH   +K 
Sbjct: 29  LISGLAQNGHFSTALVEFFEMR-REGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKC 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  S   MYC+  L + ARKLFD++P R+  +WNA IS     G   EA++  
Sbjct: 88  GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAF 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R      + IT  + L  C+   ++  G+ +H  +++ G + ++ V N LI+ Y K 
Sbjct: 148 IEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKC 207

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R +  +F +M  ++ VSW S++AAY Q+++   A   +   ++  ++     + S+ 
Sbjct: 208 KQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVL 267

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A +      RS+H   + +      + +G+A+VDMY K G I  +   F+ +P K++
Sbjct: 268 SACAGMAGLELGRSIHAHAV-KACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 326

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEE--CNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           ++ N+LI GYA  G    A+ +F+ M    C    PN  T+VS+L A S  GA+  G+KI
Sbjct: 327 VTRNSLIGGYAHQGQVDMALALFEEMAPRGCGP-TPNYMTFVSLLSACSRAGAVENGMKI 385

Query: 356 HARVIKNCLCFDVFVAT-----------CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WN 403
                     FD   +T           C+VDM G+ G ++ A     ++P   ++  W 
Sbjct: 386 ----------FDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWG 435

Query: 404 AIISCHGIHGQGDKAL----NFFRQMLDEGVRPDHITFVSLLTA 443
           A+ +   +HG+    L    N F+  LD     +H+   +   A
Sbjct: 436 ALQNACRMHGKPQLGLLAAENLFK--LDPKDSGNHVLLSNTFAA 477


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/564 (40%), Positives = 343/564 (60%), Gaps = 11/564 (1%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKF--GMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           IH +I+ +G + N  +S  L+N  A    G + +A  VF ++      +WNS+I  + QS
Sbjct: 42  IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQS 101

Query: 209 NDPITAHG--FFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             P+      F+  M  A   +PD  T   L     +  +    R VHGFI+R G + +D
Sbjct: 102 PSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFG-YDQD 160

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V++   ++  YA  G+I +A  VFE +P +D++SWN++I+ Y Q GL  EA++++  M  
Sbjct: 161 VVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRI 220

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            N +  +  T VS+L + +HVGAL  G+++H    +  L  ++FV   L+DMY KCG + 
Sbjct: 221 SN-VGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLA 279

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A+S+F  +P+     WN++I  +G+HG+GD+A+ FF  ML  GVRP+ ITF+ LL  CS
Sbjct: 280 SALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCS 339

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV EG +YFHMM  EF +KP +KHYGCMVDLFGRAG L  A   I++ P + D  +W
Sbjct: 340 HQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLW 399

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             LLG+C+IH N+E+G +A   L ++ S   G  VL+S IYA     +GV  +R L + R
Sbjct: 400 RTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSR 459

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+K TPGWS IEV ++V  F   +++HP   +IY +L  +  +   +GY  ++S ++   
Sbjct: 460 GIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAP 519

Query: 626 EEDEKEHILTS----HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           E + +E+   +    HSE+LAIA+G+  +P  + + I KNLRVC DCHN+TKF+S   +R
Sbjct: 520 ESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDR 579

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EIIVRD  RFHHFK G CSC ++W
Sbjct: 580 EIIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 199/384 (51%), Gaps = 11/384 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRD 93
           +L+ C ++    KIH  +L  G++ +  ++  LL+ +C   ++     A+ +F  +    
Sbjct: 29  LLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLN-FCAVSVSGSLAYAQLVFHRIHNPQ 87

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM---DPITVASILPVCARSDNILSGLL 150
           + +WN+MI G+ QS + ++   I+    +   S    D  T + +L  C  +        
Sbjct: 88  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 147

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H +I++ G + ++ +  NLI  YA  G++  A +VF++M  RD+VSWNS+I+ Y Q+  
Sbjct: 148 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 207

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   +  M+ + +  D  TLVSL S  A +        +H F   R   +E++ +GN
Sbjct: 208 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERR-LVENIFVGN 266

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A++DMYAK G + SA ++F  +P +DV +WN++I GY  +G   EAI  F  M     + 
Sbjct: 267 ALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG-VR 325

Query: 331 PNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           PN  T++ +L   SH G +++G++  H    +  L   +    C+VD++G+ G++ +A+ 
Sbjct: 326 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 385

Query: 390 LFYQVP-RSSSVPWNAIISCHGIH 412
           +    P +   V W  ++    IH
Sbjct: 386 VIRSSPSQHDPVLWRTLLGSCKIH 409



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 9/294 (3%)

Query: 18  FYQFTLT-SGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKLGFEWDVFVAASLLHMY 73
           FY   L+ S  RPD YTF  +LKAC    +  K   +H  +++ G++ DV +  +L+  Y
Sbjct: 112 FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSY 171

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
              GL   A K+F++MP RD  SWN+MIS YCQ+G   EAL + D+MR+  V  D  T+ 
Sbjct: 172 AGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLV 231

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+L  CA    +  G+ +H +  +  L  N+FV N LI+MYAK G +  AL +F+ M +R
Sbjct: 232 SLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 291

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DV +WNS+I  Y        A  FF +M  AG++P+ +T + L    +     +    V 
Sbjct: 292 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKE--GVQ 349

Query: 254 GFIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
            F M    F     I +   +VD++ + G +  A  V    P + D + W TL+
Sbjct: 350 YFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 403


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/639 (35%), Positives = 382/639 (59%), Gaps = 5/639 (0%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G++ HC V+K+G   D FV  SL+ MY + G  + A +++D M   D+ + N +IS Y +
Sbjct: 132 GRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYAR 191

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +G  V+A  +  ++   G   +  T +++L VC     I  G  +H ++VK        V
Sbjct: 192 NGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAV 251

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            N L+ +Y+K GMM  A  VF+ + +R+++SW + I  + Q  D   A   F+ M+++GI
Sbjct: 252 GNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGI 311

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +P+  T   + +    + D  + R  H  ++++G     V +G A++DMY+ LG ++ A 
Sbjct: 312 EPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKG-MASGVFVGTAIIDMYSGLGEMDEAE 370

Query: 287 AVFEGL-PVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYS 344
             F+ +      +SWN LI GY  N    +A+E F +M++E  ++  N+ TY +I  A S
Sbjct: 371 KQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKE--DVACNEFTYSNIFKACS 428

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
              +L   ++IH+R+IK+ +  ++ VA+ L++ Y +CG +++A+ +F Q+  +  V WN+
Sbjct: 429 SFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNS 488

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           II  +  +G   KA+   R+M++EG +P   TF+++L+ACSHSGLV EGQ +F  M +++
Sbjct: 489 IIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDY 548

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            I+P   H  CMVD+ GRAG L  A +FI+ + ++P ASIW  LL ACR + N+++    
Sbjct: 549 SIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYV 608

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
           ++++ +++  +   YV +SN+YA VG+W   +  R L   + + K PG S IEVNNK+  
Sbjct: 609 AEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYK 668

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F++ ++ HP+  K+Y++L+ L  +++ +GY P  + VL       KE ++  HSE+LA+ 
Sbjct: 669 FFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVC 728

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREI 683
           FG++S PP  PI++ KNLRVC DC++  K+IS+IT+R I
Sbjct: 729 FGLLSLPPGKPIRVLKNLRVCLDCYSTMKYISRITDRYI 767



 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 298/537 (55%), Gaps = 33/537 (6%)

Query: 42   RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
            R L  G+ +H  ++ +G     + AA L+  Y   G  + ARKLFD +P  +   W  + 
Sbjct: 817  RALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLT 876

Query: 102  SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
                + G   EAL    EM+ EG+  +   + SIL  C    +  +G  +H  I+K+  E
Sbjct: 877  GACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFE 936

Query: 162  FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             + ++ + LI MY+K G +  A RVFD ++++D+V  N++++ Y Q      A      M
Sbjct: 937  SDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKM 996

Query: 222  QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            QQAG++P++++  +L +  +Q+ D    +S+   + R       ++  N V         
Sbjct: 997  QQAGVKPNVVSWNTLIAGFSQVGD----KSMVSEVFR-------LMTANGVE-------- 1037

Query: 282  INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
                          DV+SW ++I+G+ QN    E  + F+ M +     P+  T  S+LP
Sbjct: 1038 -------------PDVVSWTSVISGFVQNFHNHEGFDAFKEMLD-QGFCPSSVTISSLLP 1083

Query: 342  AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
            A ++V  LR G +IH   +   +  DV+V + LVDMY KCG I +A  LFY +P  ++V 
Sbjct: 1084 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVT 1143

Query: 402  WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
            WN++I  +  HG  ++A+  F QM +   + DH+TF ++L ACSH+G+V  G+  F  MQ
Sbjct: 1144 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQ 1203

Query: 462  EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
            E++ I+P L+HY CMVDL GRAG L  A++ I+ MPV PD  +WGALLGACR HGN+EL 
Sbjct: 1204 EKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 1263

Query: 522  AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
             VA++ LFE++ E+ G  +L+SN+YA+ G+W    +++ + + R   K PG S IE 
Sbjct: 1264 EVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIEA 1320



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 205/417 (49%), Gaps = 47/417 (11%)

Query: 6    VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD 62
             R G   EA+  F +     GLRP+ +  P +LKAC +L D   G+ +H  +LK  FE D
Sbjct: 880  ARRGFYEEALSAFSEMQ-KEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESD 938

Query: 63   VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
             ++ ++L++MY + G    A ++FD +  +D    NAM+SGY Q G   EALB++ +M+ 
Sbjct: 939  AYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQ 998

Query: 123  EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
             GV                  N++S                    N LI  +++ G    
Sbjct: 999  AGV----------------KPNVVSW-------------------NTLIAGFSQVGDKSM 1023

Query: 183  ALRVFDQM----MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
               VF  M    +E DVVSW S+I+ + Q+         F  M   G  P  +T+ SL  
Sbjct: 1024 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 1083

Query: 239  IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                + + R+ + +HG+ M  G   +DV + +A+VDMYAK G I+ A  +F  +P ++ +
Sbjct: 1084 ACTNVANLRHGKEIHGYAMVIG-VEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTV 1142

Query: 299  SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            +WN+LI GYA +G  +EAIE+F  MEE ++   +  T+ ++L A SH G +  G  +  +
Sbjct: 1143 TWNSLIFGYANHGYCNEAIELFNQMEE-SDTKLDHLTFTAVLNACSHAGMVELGESLFXK 1201

Query: 359  VI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
            +  K  +   +    C+VD+ G+ G++ +A  L   +P       W A++     HG
Sbjct: 1202 MQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHG 1258



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 207/390 (53%), Gaps = 11/390 (2%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           V S L  C R   +  G   H ++VK GL  + FV  +LI+MYAK G +  A+RV+D+M 
Sbjct: 116 VFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMT 175

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
             D  + N +I+AY ++   + A   F  +   G +P+  T  ++ ++   ++  +  + 
Sbjct: 176 SLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQ 235

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H  +++   ++ +  +GNA++ +Y+K G++  A  VFE L  +++ISW   I G+ Q+G
Sbjct: 236 LHAHVVKMQ-YLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHG 294

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              +A++ F MM E   I PN+ T+  +L +   V     G   H +VIK  +   VFV 
Sbjct: 295 DFKKALKQFSMMRESG-IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVG 353

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           T ++DMY   G +D+A   F Q+ R++S V WNA+I+ + ++ + +KA+  F +M+ E V
Sbjct: 354 TAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDV 413

Query: 431 RPDHITFVSLLTACSH-SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
             +  T+ ++  ACS    L +  Q +  +++    ++ +L     +++ + + G L   
Sbjct: 414 ACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS--NVESNLHVASSLIEAYTQCGSL--- 468

Query: 490 HNFIQNMPVRPDASI--WGALLGACRIHGN 517
            N +Q      DA +  W +++ A   +G+
Sbjct: 469 ENAVQVFTQISDADVVSWNSIIKAYSQNGD 498



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 237/477 (49%), Gaps = 15/477 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +IS Y R G   +A   F Q     G RP+ YT+  +L  C  +    +GK++H  V+K+
Sbjct: 185 LISAYARNGFFVQAFQVFMQIG-NMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKM 243

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  +  V  +LL +Y + G+   A  +F+ +  R+  SW A I+G+ Q G+  +AL   
Sbjct: 244 QYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQF 303

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR  G+  +  T + +L  C    + + G + H  ++K G+   +FV   +I+MY+  
Sbjct: 304 SMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGL 363

Query: 178 GMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           G M  A + F QM      VSWN++IA Y  +     A   F  M +  +  +  T  ++
Sbjct: 364 GEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNI 423

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               +       +  +H  +++      ++ + +++++ Y + G + +A  VF  +   D
Sbjct: 424 FKACSSFPSLATTVQIHSRLIKSN-VESNLHVASSLIEAYTQCGSLENAVQVFTQISDAD 482

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           V+SWN++I  Y+QNG   +AI +  +M+EE N+  P   T++++L A SH G +++G + 
Sbjct: 483 VVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNK--PTSXTFLTVLSACSHSGLVQEGQEF 540

Query: 356 HARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
              ++++  +  +    +C+VD+ G+ G++++A+    ++  + ++  W  +++    + 
Sbjct: 541 FKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNS 600

Query: 414 QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMM-QEEFGIKP 468
               A     ++LD  + P D   +V+L    +  G  ++ +    +M Q+E   +P
Sbjct: 601 NLQMAEYVAEKILD--LEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEP 655



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 178/386 (46%), Gaps = 35/386 (9%)

Query: 131  TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            T A  + + AR   +  G  +H ++V  GL    + +  L++ Y + G + +A ++FD++
Sbjct: 805  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 864

Query: 191  MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
               ++  W  +  A  +      A   F+ MQ+ G++P+   L S+      L+D R   
Sbjct: 865  PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGE 924

Query: 251  SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            ++H  I++   F  D  I +A++ MY+K G +  AC VF+ +  KD++  N +++GYAQ+
Sbjct: 925  NMHTVILKNS-FESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQH 983

Query: 311  GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
            G   EA+++ Q M++   + PN  ++ +++  +S VG      ++   +  N +  DV  
Sbjct: 984  GFVHEALBLVQKMQQAG-VKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV-- 1040

Query: 371  ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
                                         V W ++IS    +    +  + F++MLD+G 
Sbjct: 1041 -----------------------------VSWTSVISGFVQNFHNHEGFDAFKEMLDQGF 1071

Query: 431  RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             P  +T  SLL AC++   +  G+   H      G++  +     +VD++ + G++  A 
Sbjct: 1072 CPSSVTISSLLPACTNVANLRHGKE-IHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAK 1130

Query: 491  NFIQNMPVRPDASIWGALLGACRIHG 516
                 MP R +   W +L+     HG
Sbjct: 1131 ILFYMMPER-NTVTWNSLIFGYANHG 1155



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
            +IS +V+     E  D F +  L  G  P   T   +L AC N+ +   GK+IH   + +
Sbjct: 1046 VISGFVQNFHNHEGFDAFKEM-LDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVI 1104

Query: 58   GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            G E DV+V ++L+ MY + G  + A+ LF  MP R++ +WN++I GY   G   EA+++ 
Sbjct: 1105 GVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELF 1164

Query: 118  DEMRLEGVSMDPITVASILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++M      +D +T  ++L  C+ +  + L   L      K+ +E  L     ++++  +
Sbjct: 1165 NQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGR 1224

Query: 177  FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
             G +  A  +   M +E D   W +++ A
Sbjct: 1225 AGKLSEAYDLIKAMPVEPDKFVWGALLGA 1253



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 24/252 (9%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +N+AC +FE  P +  +S    IT   ++G   +  E    ++E      N+  +V    
Sbjct: 56  LNNACILFEKTPKRIGVS----ITESHRSGCTDDPEE---GVKEAGFFTRNETPHVEFGG 108

Query: 342 AYSH-------------VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
            + H              G +  G + H  V+K  L  D FV T L+DMY KCG +D A+
Sbjct: 109 GFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAV 168

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            ++ ++    +   N +IS +  +G   +A   F Q+ + G RP+H T+ ++L  C    
Sbjct: 169 RVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTIS 228

Query: 449 LVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
            + EG Q + H+++ ++  +  + +   ++ L+ + G +  A    +++  R   S W A
Sbjct: 229 AIQEGKQLHAHVVKMQYLSETAVGN--ALLTLYSKCGMMEEAEIVFESLRQRNIIS-WTA 285

Query: 508 LLGACRIHGNME 519
            +     HG+ +
Sbjct: 286 SINGFYQHGDFK 297



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 6/245 (2%)

Query: 335  TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
            TY   +  Y+   AL +G  +HA ++   L    + A  L+  Y +CG++ +A  LF ++
Sbjct: 805  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 864

Query: 395  PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            P ++   W  +       G  ++AL+ F +M  EG+RP+     S+L AC H      G+
Sbjct: 865  PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGE 924

Query: 455  RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
               H +  +   +        ++ ++ + GH+  A   + +  V  D  +  A++     
Sbjct: 925  N-MHTVILKNSFESDAYIISALIYMYSKCGHVEKACR-VFDWIVDKDLVVMNAMVSGYAQ 982

Query: 515  HG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK-TP 571
            HG  +  L  V   +   V    V +  L++  ++ VG    V EV  L    G++    
Sbjct: 983  HGFVHEALBLVQKMQQAGVKPNVVSWNTLIAG-FSQVGDKSMVSEVFRLMTANGVEPDVV 1041

Query: 572  GWSSI 576
             W+S+
Sbjct: 1042 SWTSV 1046


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 379/709 (53%), Gaps = 42/709 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           ++S Y + G   E +  F Q   + G +P  YT   VL+AC  L     GK IHC  +K+
Sbjct: 105 LVSGYCKNGCEVEGLRQFSQM-WSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKI 163

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSG-SWNAMISGYCQSGNAVEALDI 116
             E ++FVA  L+ MY +      A  LF  +P R +   W AM++GY Q+G +++A+  
Sbjct: 164 QLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQC 223

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EMR +G+  +  T  SIL  C        G  +H  I+  G   N++V + L++MYAK
Sbjct: 224 FKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAK 283

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  + D M   DVV WNS+I           A   F  M    I+ D  T  S+
Sbjct: 284 CGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSV 343

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              +A   + +   SVH   ++ G F     + NA+VDMYAK G ++ A  VF  +  KD
Sbjct: 344 LKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSCALDVFNKILDKD 402

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISW +L+TGY  NG   +A+++F  M     ++ +Q     +  A + +  +  G ++H
Sbjct: 403 VISWTSLVTGYVHNGFHEKALQLFCDMRTA-RVDLDQFVVACVFSACAELTVIEFGRQVH 461

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A  IK+     +     L+ MY KCG ++DA+ +   +   + + W AII          
Sbjct: 462 ANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAII---------- 511

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
                                       + +GLV  GQ YF  M++ +GIKP    Y CM
Sbjct: 512 -------------------------VGYAQNGLVETGQSYFESMEKVYGIKPASDRYACM 546

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL GRAG +  A + +  M V PDA+IW +LL ACR+HGN+ELG  A   L +++  N 
Sbjct: 547 IDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNS 606

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             YVL+SN+++  G+WE    +R   +  G+ + PG+S IE+ ++V  F + +R+HP   
Sbjct: 607 LPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAA 666

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY ++  +   +K  G+VPD +F L+D++E+ KE  L  HSE+LA+AFG+++    +PI
Sbjct: 667 EIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPI 726

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IFKNLRVCGDCH+  K+IS I +R II+RD N FHHF +G CSCGD+W
Sbjct: 727 RIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 231/464 (49%), Gaps = 10/464 (2%)

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           + W++ ++A     Y   G    ARKLF++ P+ +S +W++++SGYC++G  VE L    
Sbjct: 69  YTWNIMISA-----YANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M  +G      T+ S+L  C+    + +G +IH Y +K  LE N+FV+  L++MY+K  
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 179 MMRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            +  A  +F  + +R + V W +++  Y Q+ + + A   F  M+  G++ +  T  S+ 
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +    ++     R VHG I+  G F  +V + +A+VDMYAK G + SA  + + + + DV
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSG-FGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV 302

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN++I G   +G   EA+ +F  M    +I  +  TY S+L + +    L+ G  +H+
Sbjct: 303 VCWNSMIVGCVTHGYMEEALVLFHKMHN-RDIRIDDFTYPSVLKSLASCKNLKIGESVHS 361

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             IK        V+  LVDMY K G +  A+ +F ++     + W ++++ +  +G  +K
Sbjct: 362 LTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK 421

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F  M    V  D      + +AC+   ++  G R  H    +      L     ++
Sbjct: 422 ALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFG-RQVHANFIKSSAGSLLSAENSLI 480

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
            ++ + G L  A     +M  R   S W A++     +G +E G
Sbjct: 481 TMYAKCGCLEDAIRVXDSMETRNVIS-WTAIIVGYAQNGLVETG 523



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 172/375 (45%), Gaps = 36/375 (9%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--------- 217
           SN L++  +K G +  A ++FDQM  RD  +WN +I+AY    + + A            
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNS 99

Query: 218 ----------------------FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
                                 F+ M   G +P   TL S+    + L+     + +H +
Sbjct: 100 ITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCY 159

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLAS 314
            ++      ++ +   +VDMY+K   +  A  +F  LP  K+ + W  ++TGYAQNG + 
Sbjct: 160 AIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESL 218

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +AI+ F+ M     +  N  T+ SIL A + + A   G ++H  +I +    +V+V + L
Sbjct: 219 KAIQCFKEMRN-QGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSAL 277

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VDMY KCG +  A  +   +     V WN++I     HG  ++AL  F +M +  +R D 
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
            T+ S+L + +    +  G+   H +  + G          +VD++ + G+L  A + + 
Sbjct: 338 FTYPSVLKSLASCKNLKIGES-VHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALD-VF 395

Query: 495 NMPVRPDASIWGALL 509
           N  +  D   W +L+
Sbjct: 396 NKILDKDVISWTSLV 410


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 355/592 (59%), Gaps = 6/592 (1%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E ++ F++      L+PD +T+P VLKAC  L     GK +H  V+K GF  DV V +S 
Sbjct: 280 EGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSA 339

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + MY +  +   A KLFD+MP RD  SWN +IS Y Q G   +AL++ +EM++ G   D 
Sbjct: 340 VGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDS 399

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+ +++  CAR  ++  G  IH+ +V+ G   + FVS+ L++MY K G +  A  VF+Q
Sbjct: 400 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 459

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           +  ++VVSWNS+IA Y    D  +    F  M + GI+P L TL S+    ++  + +  
Sbjct: 460 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 519

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + +HG+I+ R     D+ + ++++D+Y K G I SA  VF+ +P  +V+SWN +I+GY +
Sbjct: 520 KFIHGYII-RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVK 578

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
            G   EA+ +F  M +   + P+  T+ S+LPA S +  L +G +IH  +I++ L  +  
Sbjct: 579 VGSYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   L+DMY KCG +D+A+ +F Q+P    V W ++I+ +G HGQ  +AL  F +M    
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 697

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
            +PD +TF+++L+ACSH+GLV EG  YF+ M  E+G KP ++HY C++DL GR G L  A
Sbjct: 698 AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREA 757

Query: 490 HNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           +  +Q  P +R D  +   L  AC +H  ++LG      L E D ++   Y+++SN+YA+
Sbjct: 758 YEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYAS 817

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           V KW+ V +VR   ++ GLKK PG S IEV  ++  F   +++HP+ + IY+
Sbjct: 818 VKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYE 869



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 207/385 (53%), Gaps = 9/385 (2%)

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIA 203
           L G LIH  IV  GL+ N+ +  +LIN+Y    + + A  VF Q +E   D+  WN ++A
Sbjct: 212 LLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF-QTIENPLDITLWNGLMA 270

Query: 204 AYEQSNDPITA-HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A  ++   I     F   +    ++PD  T  S+    + L      + VH  +++ G+ 
Sbjct: 271 ACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFA 330

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           M DV++ ++ V MYAK  +   A  +F+ +P +DV SWN +I+ Y Q+G   +A+E+F+ 
Sbjct: 331 M-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEE 389

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M + +   P+  T  +++ + + +  L +G +IH  ++++    D FV++ LVDMYGKCG
Sbjct: 390 M-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG 448

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            ++ A  +F Q+ R + V WN++I+ + + G     +  FR+M +EG+RP   T  S+L 
Sbjct: 449 CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILM 508

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           ACS S  +  G ++ H       ++  +     ++DL+ + G++G A N  QNMP + + 
Sbjct: 509 ACSRSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNV 566

Query: 503 SIWGALL-GACRIHGNMELGAVASD 526
             W  ++ G  ++   +E   + +D
Sbjct: 567 VSWNVMISGYVKVGSYLEALVIFTD 591


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 370/638 (57%), Gaps = 19/638 (2%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y + G+ + ARK+FD MP R+  SW +M+ GY Q G   EA  +   M  + V   
Sbjct: 84  LVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSW 143

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  ++    R D   +  L  +  VK     ++  S N+I      G +  A  +FD
Sbjct: 144 TVMLGGLIE-DGRVDE--ARRLFDMIPVK-----DVVASTNMIGGLCSEGRLSEAREIFD 195

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M +R+VV+W S+I+ Y  +N    A   F  M      PD    V+ T+++      R+
Sbjct: 196 EMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PDK-NEVTWTAMLKGYT--RS 246

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R      + +   ++ V   N ++  +   G +  A  VF+ +  KD  +W+ LI  Y 
Sbjct: 247 GRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYE 306

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + G   EA+ +F +M+    + PN  + +SIL     + +L  G ++H++++++    D+
Sbjct: 307 RKGFELEALALFSLMQR-EGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDI 365

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +V++ L+ MY KCG +     +F +      V WN+II+ +  HG G+KAL  F +M   
Sbjct: 366 YVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSS 425

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G  PD ITF+ +L+AC ++G V EG   F  M+ ++ +    +HY CMVDL GRAG L  
Sbjct: 426 GAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNE 485

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A N I+NMPV  DA +WGALL ACR H N++L  +A+ +L +++  + G Y+L+SN+YA+
Sbjct: 486 AMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYAS 545

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY-TGNRTHPKYEKIYDELRNLTA 607
             +W+ V E+R   R R + K+PG S IEV+NKV +F   G+ +HP++E I  +L  L A
Sbjct: 546 QSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGA 605

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            ++  GY PD SFV+ DV+E++K H L  HSE++A+A+G++  P   PI++ KNLRVCGD
Sbjct: 606 SLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGD 665

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K I+Q+T REII+RD+NRFHHFKDG+CSC D+W
Sbjct: 666 CHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 191/369 (51%), Gaps = 16/369 (4%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV  + +++   C  G  + AR++FD+MP R+  +W +MISGY  +     A  + + M 
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM- 228

Query: 122 LEGVSMDPITVASILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                 + +T  ++L    RS  I  +  L     VK      +   N +I  +   G +
Sbjct: 229 ---PDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVK-----PVAACNGMIMGFGLNGEV 280

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VFDQM E+D  +W+++I  YE+    + A   F+ MQ+ G++P+  +++S+ S+ 
Sbjct: 281 GKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVC 340

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
             L    + R VH  ++R   F  D+ + + ++ MY K G + +   VF+    KD++ W
Sbjct: 341 GSLASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMW 399

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N++I GYAQ+G   +A+EVF  M       P++ T++ +L A  + G +++G++I    +
Sbjct: 400 NSIIAGYAQHGFGEKALEVFHEMFSSGAA-PDEITFIGVLSACGYTGKVKEGLEIF-ESM 457

Query: 361 KNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
           K+    D       C+VD+ G+ G++++AM+L   +P  + ++ W A++S    H   D 
Sbjct: 458 KSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDL 517

Query: 418 ALNFFRQML 426
           A    +++L
Sbjct: 518 AEIAAKKLL 526



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 192/446 (43%), Gaps = 63/446 (14%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           + R G  + AR +FDD+  +   SWNA+++GY  +    EA  + D+M            
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP----------- 74

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
                                       E N    N L++ Y K GM+  A +VFD+M E
Sbjct: 75  ----------------------------ERNTISWNGLVSGYVKNGMISEARKVFDKMPE 106

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL-NDCRNSRS 251
           R+VVSW S++  Y Q      A   F  M +  +       VS T ++  L  D R   +
Sbjct: 107 RNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV-------VSWTVMLGGLIEDGRVDEA 159

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
              F M     ++DV+    ++      G ++ A  +F+ +P ++V++W ++I+GYA N 
Sbjct: 160 RRLFDMIP---VKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNN 216

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               A ++F++M + NE+     T+ ++L  Y+  G + +     A + K      V   
Sbjct: 217 KVDVARKLFEVMPDKNEV-----TWTAMLKGYTRSGRINEA----AELFKAMPVKPVAAC 267

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             ++  +G  G +  A  +F Q+       W+A+I  +   G   +AL  F  M  EGVR
Sbjct: 268 NGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVR 327

Query: 432 PDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           P+  + +S+L+ C     +  G Q +  +++  F +  ++     ++ ++ + G L    
Sbjct: 328 PNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVS--SVLITMYIKCGDLVTGK 385

Query: 491 NFIQNMPVRPDASIWGALLGACRIHG 516
                   + D  +W +++     HG
Sbjct: 386 RVFDRFSSK-DIVMWNSIIAGYAQHG 410



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 154/354 (43%), Gaps = 60/354 (16%)

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+ +A+ G +  A  +FD +  + V SWN+I+A Y  +  P  A   F  M +       
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPE------- 75

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
                           RN+ S         W        N +V  Y K G+I+ A  VF+
Sbjct: 76  ----------------RNTIS---------W--------NGLVSGYVKNGMISEARKVFD 102

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P ++V+SW +++ GY Q GL  EA  +F  M E N +     ++  +L      G + 
Sbjct: 103 KMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV-----SWTVMLGGLIEDGRVD 157

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +      R+       DV  +T ++      GR+ +A  +F ++P+ + V W ++IS + 
Sbjct: 158 EA----RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA 213

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           ++ + D A   F  M D+    + +T+ ++L   + SG ++E    F  M     +KP  
Sbjct: 214 MNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEAAELFKAMP----VKPVA 265

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
              G M+  FG  G +G A      M  + D + W AL+      G  EL A+A
Sbjct: 266 ACNG-MIMGFGLNGEVGKARWVFDQMKEKDDGT-WSALIKIYERKG-FELEALA 316



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I +Y R G   EA+   +      G+RP+F +   +L  C +L     G+++H  +++ 
Sbjct: 301 LIKIYERKGFELEAL-ALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRS 359

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ D++V++ L+ MY + G     +++FD    +D   WN++I+GY Q G   +AL++ 
Sbjct: 360 HFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVF 419

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI-VKHGLEFNLFVSNNLINMYAK 176
            EM   G + D IT   +L  C  +  +  GL I   +  K+ ++        ++++  +
Sbjct: 420 HEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGR 479

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A+ + + M +E D + W ++++A
Sbjct: 480 AGKLNEAMNLIENMPVEADAIVWGALLSA 508



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 45/323 (13%)

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            I  R +F     I    +  +A+LG I+ A  +F+ L  K V SWN ++ GY  N   +
Sbjct: 5   LIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPA 64

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA ++F  M E N I+ N      ++  Y   G + +  K+  ++ +     +V   T +
Sbjct: 65  EAQKLFDKMPERNTISWN-----GLVSGYVKNGMISEARKVFDKMPER----NVVSWTSM 115

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF------------ 422
           V  Y + G ID+A  LF+++P  + V W  ++      G+ D+A   F            
Sbjct: 116 VRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVAST 175

Query: 423 ---------------RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
                          R++ DE  + + + + S+++  + +  V   ++ F +M ++  + 
Sbjct: 176 NMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT 235

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
                +  M+  + R+G +  A    + MPV+P A+  G ++G   ++G +       D+
Sbjct: 236 -----WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFG-LNGEVGKARWVFDQ 289

Query: 528 LFEVDSENVGYYVLMSNIYANVG 550
           + E D    G +  +  IY   G
Sbjct: 290 MKEKDD---GTWSALIKIYERKG 309


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/564 (40%), Positives = 343/564 (60%), Gaps = 11/564 (1%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKF--GMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           IH +I+ +G + N  +S  L+N  A    G + +A  VF ++      +WNS+I  + QS
Sbjct: 24  IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQS 83

Query: 209 NDPITAHG--FFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             P+      F+  M  A   +PD  T   L     +  +    R VHGFI+R G + +D
Sbjct: 84  PSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFG-YDQD 142

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V++   ++  YA  G+I +A  VFE +P +D++SWN++I+ Y Q GL  EA++++  M  
Sbjct: 143 VVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRI 202

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            N +  +  T VS+L + +HVGAL  G+++H    +  L  ++FV   L+DMY KCG + 
Sbjct: 203 SN-VGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLA 261

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A+S+F  +P+     WN++I  +G+HG+GD+A+ FF  ML  GVRP+ ITF+ LL  CS
Sbjct: 262 SALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCS 321

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV EG +YFHMM  EF +KP +KHYGCMVDLFGRAG L  A   I++ P + D  +W
Sbjct: 322 HQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLW 381

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             LLG+C+IH N+E+G +A   L ++ S   G  VL+S IYA     +GV  +R L + R
Sbjct: 382 RTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSR 441

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+K TPGWS IEV ++V  F   +++HP   +IY +L  +  +   +GY  ++S ++   
Sbjct: 442 GIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAP 501

Query: 626 EEDEKEHILTS----HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           E + +E+   +    HSE+LAIA+G+  +P  + + I KNLRVC DCHN+TKF+S   +R
Sbjct: 502 ESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDR 561

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EIIVRD  RFHHFK G CSC ++W
Sbjct: 562 EIIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 199/384 (51%), Gaps = 11/384 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRD 93
           +L+ C ++    KIH  +L  G++ +  ++  LL+ +C   ++     A+ +F  +    
Sbjct: 11  LLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLN-FCAVSVSGSLAYAQLVFHRIHNPQ 69

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM---DPITVASILPVCARSDNILSGLL 150
           + +WN+MI G+ QS + ++   I+    +   S    D  T + +L  C  +        
Sbjct: 70  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 129

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H +I++ G + ++ +  NLI  YA  G++  A +VF++M  RD+VSWNS+I+ Y Q+  
Sbjct: 130 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 189

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A   +  M+ + +  D  TLVSL S  A +        +H F   R   +E++ +GN
Sbjct: 190 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERR-LVENIFVGN 248

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           A++DMYAK G + SA ++F  +P +DV +WN++I GY  +G   EAI  F  M     + 
Sbjct: 249 ALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG-VR 307

Query: 331 PNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           PN  T++ +L   SH G +++G++  H    +  L   +    C+VD++G+ G++ +A+ 
Sbjct: 308 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 367

Query: 390 LFYQVP-RSSSVPWNAIISCHGIH 412
           +    P +   V W  ++    IH
Sbjct: 368 VIRSSPSQHDPVLWRTLLGSCKIH 391



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 9/294 (3%)

Query: 18  FYQFTLT-SGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKLGFEWDVFVAASLLHMY 73
           FY   L+ S  RPD YTF  +LKAC    +  K   +H  +++ G++ DV +  +L+  Y
Sbjct: 94  FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSY 153

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
              GL   A K+F++MP RD  SWN+MIS YCQ+G   EAL + D+MR+  V  D  T+ 
Sbjct: 154 AGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLV 213

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+L  CA    +  G+ +H +  +  L  N+FV N LI+MYAK G +  AL +F+ M +R
Sbjct: 214 SLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 273

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DV +WNS+I  Y        A  FF +M  AG++P+ +T + L    +     +    V 
Sbjct: 274 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKE--GVQ 331

Query: 254 GFIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
            F M    F     I +   +VD++ + G +  A  V    P + D + W TL+
Sbjct: 332 YFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 385


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/765 (31%), Positives = 397/765 (51%), Gaps = 108/765 (14%)

Query: 47   GKKIHCSVLKLGFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G  IH  ++K G +  D  V ++L+  Y R    ++A K+FD+MP RD  +WN ++    
Sbjct: 543  GFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNL 602

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            QSGN  +A+ +   MR  G      T+  +L VC+  +    G  IH Y+++ G E N+ 
Sbjct: 603  QSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVS 662

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
            + N+LI MY++ G +  + +VF+ M++R++ SWNSI+++Y +      A G    M+  G
Sbjct: 663  MCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCG 722

Query: 226  IQPDLLTLVSLTSIVAQLNDCRNS-----------------------------------R 250
            ++PD++T  SL S  A     R++                                   +
Sbjct: 723  LKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGK 782

Query: 251  SVHGFIMRRG-WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
            ++HG+++R   W+  DV +   ++DMY K G +  A  VF+ +  K++++WN+LI+G + 
Sbjct: 783  AIHGYVIRNQLWY--DVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSY 840

Query: 310  NGLASEAIEVFQMME----------------------------------ECNEINPNQGT 335
             GL  EA  +   ME                                  + N + PN  +
Sbjct: 841  TGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVS 900

Query: 336  YVSILPAYSHVGALRQGIKI-----------------------------------HARVI 360
            + +IL   S  G    G+KI                                   H+  +
Sbjct: 901  WTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCL 960

Query: 361  KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            KN L  D  VAT LVDMY K G +  A  +F+ +       WN +I  + +  +G++ + 
Sbjct: 961  KNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIA 1020

Query: 421  FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
             F  ML+ G+ PD ITF S+L+ C +SGLV EG +YF +M+  +G+ P ++H  CMV+L 
Sbjct: 1021 VFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELL 1080

Query: 481  GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            GR+G+L  A +FI+ MP++PDA+IWGA L +C+IH ++EL  +A  RL  ++  N   Y+
Sbjct: 1081 GRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYM 1140

Query: 541  LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            +M N+Y+N+ +W  V+ +R+   +  ++    WS I+++  V IFY   + HP   +IY 
Sbjct: 1141 MMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYF 1200

Query: 601  ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
            EL  L ++MK  GY+PD   + Q+V E EKE +L  H+E+LA+ +G+I     +PI++ K
Sbjct: 1201 ELYKLVSEMKKSGYMPDTRCIHQNVSESEKEKLLMGHTEKLAMTYGLIKKKGIAPIRVVK 1260

Query: 661  NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            N  +C DCH   K+IS +  REI++++  R HHF+DG CSC + W
Sbjct: 1261 NTNLCSDCHTVAKYISVLRNREIVLQEGARVHHFRDGKCSCNNSW 1305



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/555 (25%), Positives = 251/555 (45%), Gaps = 93/555 (16%)

Query: 51  HCSVLKL--GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           H  ++KL   FE + F++  L+  Y  FG    A  +F     R+  SW   +      G
Sbjct: 444 HARMMKLIDRFELE-FISKCLITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFG 502

Query: 109 NAVEALDILDE-MRLE--GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNL 164
             VE   +L+E +RL+  GV+ D + +A +  +CA       G  IH  ++K GL+  + 
Sbjct: 503 --VEKYKVLEEFVRLQNKGVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDT 560

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            V + L+  Y +   +  A ++FD+M +RD ++WN I+    QS +   A   F  M+ +
Sbjct: 561 RVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFS 620

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G +    T+V L  + +        R +HG+++R G F  +V + N+++ MY++ G + S
Sbjct: 621 GAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLG-FESNVSMCNSLIVMYSRNGKLES 679

Query: 285 ACAVFEGLPVK-----------------------------------DVISWNTLITGYAQ 309
           +  VF  +  +                                   D+++WN+L++GYA 
Sbjct: 680 SRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYAS 739

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
             L+ +AI V + ++    + PN  +  S+L A    G ++ G  IH  VI+N L +DV+
Sbjct: 740 KALSRDAIAVLKRIQIAG-LKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVY 798

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVP---------------------------------- 395
           V T L+DMY K G +  A  +F  +                                   
Sbjct: 799 VETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEG 858

Query: 396 -RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            +S++V WN+++S +   G+ +KAL    +M   GV P+ +++ ++L+ CS +G    G 
Sbjct: 859 IKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGL 918

Query: 455 RYFHMMQEEFGIKPH-------LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           + F  MQEE G+ P+       L+  GC+  L+         H+F     +  DA +  A
Sbjct: 919 KIFLKMQEE-GVSPNSATISSLLRILGCLSLLYSGKE----VHSFCLKNNLTRDAHVATA 973

Query: 508 LLGACRIHGNMELGA 522
           L+      G+++  A
Sbjct: 974 LVDMYAKSGDLQSAA 988


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 366/619 (59%), Gaps = 6/619 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ +V+CG  + AV  F         +P+  TF  VL  C +      G ++H  V+  
Sbjct: 44  MLNGFVKCGEPNSAVKVFEDMR-NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISC 102

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF +D  VA +L+ MY +FG  + A KLF+ MP  +  +WN MI+G+ Q+G   EA  + 
Sbjct: 103 GFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLF 162

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GVS D IT AS LP    S ++  G  IH YI++HG+  ++F+ + LI++Y K 
Sbjct: 163 SEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKC 222

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++F Q    D+V   +II+ Y  +     A   F  + +  + P+ +TL S+ 
Sbjct: 223 RDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVL 282

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      + +H  I++ G   E   +G+A++DMYAK G ++ A  +F  +P KD 
Sbjct: 283 PACAGLATLNLGKELHANILKHG-LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDA 341

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN +IT  +QNG   EAI++F+ M     ++ +  +  + L A +++ AL  G  IH+
Sbjct: 342 VCWNAIITNCSQNGKPQEAIDLFRQMGR-EGLSYDCVSISAALSACANLPALHHGKAIHS 400

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     +VF  + L+DMYGKCG +  A  +F  +   + V WN+II+ +G HG  + 
Sbjct: 401 FMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEV 460

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           +L  F +ML++G++PDH+TF+++L+AC H+G V +G +YF  M EE+GI   ++HY C+V
Sbjct: 461 SLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIV 520

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAG L  A   I+NMP  PD  +WG LLGACR+HGN+EL  VAS  L ++D EN G
Sbjct: 521 DLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSG 580

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN++A+ G+W  V ++RSL + RG++K PG+S IEVN    +F   + +HP+  +
Sbjct: 581 CYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQ 640

Query: 598 IYDELRNLTAKMKSLGYVP 616
           IY  L NL  +++  GY P
Sbjct: 641 IYSVLNNLLLELRKEGYCP 659



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 160/545 (29%), Positives = 292/545 (53%), Gaps = 12/545 (2%)

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +GF  D FV +SL+ +Y   G    AR+LFD MP +D   WN M++G+ + G    A+ +
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++MR      + IT AS+L +CA       G  +H  ++  G  F+  V+N L+ MY+K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           FG +  AL++F+ M + +VV+WN +IA + Q+     A   F+ M  AG+ PD +T  S 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              V +    +  + +HG+I+R G  + DV + +A++D+Y K   +  AC +F+     D
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIAL-DVFLKSALIDIYFKCRDVGMACKIFKQSTNVD 239

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++    +I+GY  NGL ++A+E+F+ + E  +++PN  T  S+LPA + +  L  G ++H
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLE-EKMSPNAVTLASVLPACAGLATLNLGKELH 298

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A ++K+ L     V + ++DMY KCGR+D A  +F ++P   +V WNAII+    +G+  
Sbjct: 299 ANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQ 358

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A++ FRQM  EG+  D ++  + L+AC++   +  G +  H    +      +     +
Sbjct: 359 EAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG-KAIHSFMIKGAFDSEVFAESAL 417

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSE 534
           +D++G+ G+L +A      M  + + S W +++ A   HG++E+      ++ E  +  +
Sbjct: 418 IDMYGKCGNLSVARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVSLALFHKMLEDGIQPD 476

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL-KKTPGWSSIEVNNKVDIFYTGNRTHP 593
           +V +  ++S         +G+   R +  + G+  +   ++ I     VD+F    R + 
Sbjct: 477 HVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACI-----VDLFGRAGRLNE 531

Query: 594 KYEKI 598
            +E I
Sbjct: 532 AFETI 536


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 355/592 (59%), Gaps = 6/592 (1%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E ++ F++      L+PD +T+P VLKAC  L     GK +H  V+K GF  DV V +S 
Sbjct: 88  EGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSA 147

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + MY +  +   A KLFD+MP RD  SWN +IS Y Q G   +AL++ +EM++ G   D 
Sbjct: 148 VGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDS 207

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+ +++  CAR  ++  G  IH+ +V+ G   + FVS+ L++MY K G +  A  VF+Q
Sbjct: 208 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 267

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           +  ++VVSWNS+IA Y    D  +    F  M + GI+P L TL S+    ++  + +  
Sbjct: 268 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 327

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + +HG+I+R      D+ + ++++D+Y K G I SA  VF+ +P  +V+SWN +I+GY +
Sbjct: 328 KFIHGYIIRNR-VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVK 386

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
            G   EA+ +F  M +   + P+  T+ S+LPA S +  L +G +IH  +I++ L  +  
Sbjct: 387 VGSYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   L+DMY KCG +D+A+ +F Q+P    V W ++I+ +G HGQ  +AL  F +M    
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSD 505

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
            +PD +TF+++L+ACSH+GLV EG  YF+ M  E+G KP ++HY C++DL GR G L  A
Sbjct: 506 AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREA 565

Query: 490 HNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           +  +Q  P +R D  +   L  AC +H  ++LG      L E D ++   Y+++SN+YA+
Sbjct: 566 YEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYAS 625

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           V KW+ V +VR   ++ GLKK PG S IEV  ++  F   +++HP+ + IY+
Sbjct: 626 VKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYE 677



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 215/404 (53%), Gaps = 9/404 (2%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           MD   + S+L  C  S  +  G LIH  IV  GL+ N+ +  +LIN+Y    + + A  V
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 187 FDQMMER--DVVSWNSIIAAYEQSNDPITA-HGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           F Q +E   D+  WN ++AA  ++   I     F   +    ++PD  T  S+    + L
Sbjct: 61  F-QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 + VH  +++ G+ M DV++ ++ V MYAK  +   A  +F+ +P +DV SWN +
Sbjct: 120 GRVGYGKMVHTHVIKSGFAM-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNV 178

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+ Y Q+G   +A+E+F+ M + +   P+  T  +++ + + +  L +G +IH  ++++ 
Sbjct: 179 ISCYYQDGQPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 237

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
              D FV++ LVDMYGKCG ++ A  +F Q+ R + V WN++I+ + + G     +  FR
Sbjct: 238 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFR 297

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M +EG+RP   T  S+L ACS S  +  G ++ H       ++  +     ++DL+ + 
Sbjct: 298 RMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKC 356

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALL-GACRIHGNMELGAVASD 526
           G++G A N  QNMP + +   W  ++ G  ++   +E   + +D
Sbjct: 357 GNIGSAENVFQNMP-KTNVVSWNVMISGYVKVGSYLEALVIFTD 399


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 374/629 (59%), Gaps = 39/629 (6%)

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNN 169
           +++ +L+   LE   +DP+  A+++  C  ++ I +   +H +I+   H      F++N 
Sbjct: 46  KSIQLLESRELE---LDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANL 102

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           LI MY K G + +A  +F+ M  R+V +W   +AA+  +     A  FF  M Q+G +PD
Sbjct: 103 LIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPD 162

Query: 230 LLT--LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            +T  ++               R +H +    G  + +V++G AV+ MY K G ++ A A
Sbjct: 163 RVTFSVILAAIAQMGAAAIDQGREIHRYARISG-LLPNVVVGTAVISMYGKCGRLDDARA 221

Query: 288 VFEGLPVK-------------------------------DVISWNTLITGYAQNGLASEA 316
            FE L  K                               D + WN +I  YAQ+G   +A
Sbjct: 222 AFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQA 281

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           +++++ M +  ++ P QGT+V+++   + + AL+QG  IHARV       ++ V+  LV 
Sbjct: 282 LDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVH 341

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MYGKCG +D+A+ +F+ +     + WN IIS +  HG  D+AL  +++M  +GV+P  +T
Sbjct: 342 MYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVT 401

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           FV LL+ACSH GLV++G  YF+ MQ++  IKP + H+GC++DL GR G L  A   +++M
Sbjct: 402 FVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSM 461

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
           P++ +A  W +LLGAC+ HG+++ G  A+D++ +      G YVL+SNIYA  G+W+ V+
Sbjct: 462 PIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVE 521

Query: 557 EVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
           ++R +   RG+KK+PG S IE+ + V  F +G+ +HP+ E+IY EL  +  +MK LGYVP
Sbjct: 522 KIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVP 581

Query: 617 DKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
           D S V  D+EE+EKE +L  HSE+LAI +G +  P KS ++I KNLRVC DCH  TKF+S
Sbjct: 582 DTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMS 641

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IT R+I+VRD+ RFH F++G CSC DYW
Sbjct: 642 RITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 201/427 (47%), Gaps = 40/427 (9%)

Query: 40  ACRNLVDGKKIHCSVLKLGFE--WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           A   +   +++H  +L L        F+A  L+ MY + G    AR+LF+ MP R+  +W
Sbjct: 72  AANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTW 131

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL--PVCARSDNILSGLLIHLYI 155
              ++ +  +G   EAL     M   G   D +T + IL       +  I  G  IH Y 
Sbjct: 132 TVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYA 191

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMM-------------------------------RHAL 184
              GL  N+ V   +I+MY K G +                               R AL
Sbjct: 192 RISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREAL 251

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQL 243
            +F +M + D V WN++IAAY Q      A   + +M     + P   T V++  + A+L
Sbjct: 252 ELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 311

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
           +  +  R++H  + R   F  ++++ NA+V MY K G ++ A  VF  + +KD ISWNT+
Sbjct: 312 SALKQGRAIHARV-RATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 370

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+ YA +G + +A+ ++Q M +   + P + T+V +L A SH G +  G+    R+  + 
Sbjct: 371 ISSYAYHGHSDQALLLYQEM-DLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDH 429

Query: 364 -LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNF 421
            +   V    C++D+ G+ GR+ +A  +   +P ++++V W +++     HG   + +  
Sbjct: 430 RIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRA 489

Query: 422 FRQMLDE 428
             Q++D 
Sbjct: 490 ADQVVDR 496



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 164/394 (41%), Gaps = 65/394 (16%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN-----LVDGKKIHCSVLKLGFEWDVFVA 66
           SEA+  F++    SG RPD  TF  +L A        +  G++IH      G   +V V 
Sbjct: 145 SEAL-VFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVG 203

Query: 67  ASLLHMYCRFGLANVAR-------------------------------KLFDDMPVRDSG 95
            +++ MY + G  + AR                               +LF +M   DS 
Sbjct: 204 TAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSV 263

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNILSGLLIHL 153
            WNAMI+ Y Q G   +ALD+   M  +   + P   T  +++ VCA    +  G  IH 
Sbjct: 264 CWNAMIAAYAQHGRGKQALDLYRSMH-DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHA 322

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            +     + NL VSN L++MY K G +  AL VF  M  +D +SWN+II++Y        
Sbjct: 323 RVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQ 382

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG----WFMED---- 265
           A   +  M   G++P  +T V L S  +           HG ++  G    + M+D    
Sbjct: 383 ALLLYQEMDLQGVKPTEVTFVGLLSACS-----------HGGLVADGLDYFYRMQDDHRI 431

Query: 266 ---VIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQ 321
              V     ++D+  + G +  A  V + +P++ + + W +L+     +G     +    
Sbjct: 432 KPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAAD 491

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            +   + +    G YV +   Y+  G  +   KI
Sbjct: 492 QV--VDRVPWTSGGYVLLSNIYAAAGRWKDVEKI 523



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 7/216 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y + GR  +A+D +     T+ L P   TF  V+  C  L     G+ IH  V   
Sbjct: 268 MIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT 327

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ ++ V+ +L+HMY + G  + A  +F  M ++D  SWN +IS Y   G++ +AL + 
Sbjct: 328 NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLY 387

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
            EM L+GV    +T   +L  C+    +  G L + Y ++  H ++ ++     +I++  
Sbjct: 388 QEMDLQGVKPTEVTFVGLLSACSHGGLVADG-LDYFYRMQDDHRIKPSVPHFGCIIDLLG 446

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSND 210
           + G +  A  V   M ++ + V W S++ A +   D
Sbjct: 447 RGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGD 482


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/669 (35%), Positives = 389/669 (58%), Gaps = 7/669 (1%)

Query: 42  RNLVDGKKIHCSVL---KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWN 98
           ++L  GK IH  ++   +   + D+    SL+++Y + G +  ARKLFD M  R+  SW+
Sbjct: 37  KSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWS 96

Query: 99  AMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           A++ GY   G  +E L +   +  L+    +      +L  CA S  +  G   H Y++K
Sbjct: 97  ALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLK 156

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            GL  + +V N LI+MY++   +  A+++ D +   DV S+NSI++A  +S     A   
Sbjct: 157 SGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQV 216

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
              M    +  D +T VS+  + AQ+ D +    +H  +++ G  + DV + + ++D Y 
Sbjct: 217 LKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTG-LVFDVFVSSTLIDTYG 275

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G + +A   F+GL  ++V++W  ++T Y QNG   E + +F  ME   +  PN+ T+ 
Sbjct: 276 KCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKME-LEDTRPNEFTFA 334

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
            +L A + + AL  G  +H R++ +     + V   L++MY K G ID + ++F  +   
Sbjct: 335 VLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNR 394

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
             + WNA+I  +  HG G +AL  F+ M+  G  P+++TF+ +L+AC H  LV EG  YF
Sbjct: 395 DVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYF 454

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHG 516
             + ++F ++P L+HY CMV L GRAG L  A NF++    V+ D   W  LL AC IH 
Sbjct: 455 DQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHR 514

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           N  LG   ++ + ++D  +VG Y L+SN++A   KW+GV ++R L ++R +KK PG S +
Sbjct: 515 NYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWL 574

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           ++ N   +F +    HP+  +I+++++ L A +K LGY PD   VL DVE+++KE  L+ 
Sbjct: 575 DIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSH 634

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LA+A+G++  PP  PI+I KNLR+C DCH   K IS+ T R IIVRD+NRFHHF++
Sbjct: 635 HSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFRE 694

Query: 697 GICSCGDYW 705
           G+C+C D+W
Sbjct: 695 GLCTCNDHW 703



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ Y++ G   E ++ F +  L    RP+ +TF  +L AC +LV    G  +H  ++  
Sbjct: 301 VLTAYLQNGHFEETLNLFTKMELEDT-RPNEFTFAVLLNACASLVALAYGDLLHGRIVMS 359

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+  + V  +L++MY + G  + +  +F +M  RD  +WNAMI GY   G   +AL + 
Sbjct: 360 GFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVF 419

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLINMYAK 176
            +M   G   + +T   +L  C     +  G      I+K   +E  L     ++ +  +
Sbjct: 420 QDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGR 479

Query: 177 FGMMRHA---LRVFDQMMERDVVSWNSIIAA 204
            G++  A   ++   Q ++ DVV+W +++ A
Sbjct: 480 AGLLDEAENFMKTTTQ-VKWDVVAWRTLLNA 509


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/569 (39%), Positives = 335/569 (58%), Gaps = 37/569 (6%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           + L   YA  G + +++ +F +     V  W +II  +        A  F+  M   G++
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           P+  T  S    + +L      +++H   ++ G F  D+ +   ++D+YA+ G + SA  
Sbjct: 73  PNAFTFSS----ILKLCPIEPGKALHSQAVKLG-FDSDLYVRTGLLDVYARGGDVVSAQQ 127

Query: 288 VFEGLPVKDVIS-------------------------------WNTLITGYAQNGLASEA 316
           +F+ +P K ++S                               WN +I GY QNG+ +EA
Sbjct: 128 LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 187

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           + +F+ M +  +  PN+ T +S+L A   +GAL  G  +H+ +  N + F+V V T LVD
Sbjct: 188 LVLFRRMLKA-KAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 246

Query: 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436
           MY KCG ++DA  +F ++     V WN++I  + + G   +AL  F+ M   G+ P +IT
Sbjct: 247 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNIT 306

Query: 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496
           F+ +L+AC HSG V+EG   F+ M++E+GI+P ++HYGCMV+L GRAGH+  A+  ++NM
Sbjct: 307 FIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 366

Query: 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556
            + PD  +WG LLGACR+HG + LG    + L + +  N G Y+L+SNIYA VG W+GV 
Sbjct: 367 NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVA 426

Query: 557 EVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVP 616
            +R++ +D G+KK PG SSIEVNNKV  F  G   HPK ++IY  L  +   +KS GY P
Sbjct: 427 RLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTP 486

Query: 617 DKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFIS 676
               VL D+ E EKE  L  HSE+LAIAFG+I++ P + I+I KNLRVC DCH  TK IS
Sbjct: 487 QTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLIS 546

Query: 677 QITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IT R+I+VRD NRFHHF +G CSCGDYW
Sbjct: 547 KITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 173/385 (44%), Gaps = 67/385 (17%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           L E    FY   LT G+ P+ +TF  +LK C  +  GK +H   +KLGF+ D++V   LL
Sbjct: 55  LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP-IEPGKALHSQAVKLGFDSDLYVRTGLL 113

Query: 71  HMYCRFGLANVARKLFDDMPV-------------------------------RDSGSWNA 99
            +Y R G    A++LFD MP                                RD   WN 
Sbjct: 114 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 173

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           MI GY Q+G   EAL +   M       + +TV S+L  C +   + SG  +H YI  +G
Sbjct: 174 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 233

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           ++FN+ V   L++MY+K G +  A  VFD++ ++DVV+WNS+I  Y        A   F 
Sbjct: 234 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY--- 276
           +M + G+ P  +T + +      L+ C +S          GW  E   I N + D Y   
Sbjct: 294 SMCRMGLHPTNITFIGI------LSACGHS----------GWVTEGWDIFNKMKDEYGIE 337

Query: 277 -------------AKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM 322
                         + G +  A  + + + ++ D + W TL+     +G  +   ++ ++
Sbjct: 338 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 397

Query: 323 MEECNEINPNQGTYVSILPAYSHVG 347
           + + N    N GTY+ +   Y+ VG
Sbjct: 398 LVDQNL--ANSGTYILLSNIYAAVG 420



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 178/381 (46%), Gaps = 41/381 (10%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
            L   Y   G  + +  LF          W A+I G+   G   +AL+   +M  +GV  
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           +  T +SIL +C     I  G  +H   VK G + +L+V   L+++YA+ G +  A ++F
Sbjct: 74  NAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 188 DQMME-------------------------------RDVVSWNSIIAAYEQSNDPITAHG 216
           D M E                               RD V WN +I  Y Q+  P  A  
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M +A  +P+ +T++S+ S   QL    + R VH +I   G    +V +G A+VDMY
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG-IQFNVHVGTALVDMY 248

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           +K G +  A  VF+ +  KDV++WN++I GYA  G + EA+++F+ M     ++P   T+
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMG-LHPTNITF 307

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQV 394
           + IL A  H G + +G  I  + +K+    +  +    C+V++ G+ G ++ A  L   +
Sbjct: 308 IGILSACGHSGWVTEGWDIFNK-MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 366

Query: 395 P-RSSSVPWNAIISCHGIHGQ 414
                 V W  ++    +HG+
Sbjct: 367 NIEPDPVLWGTLLGACRLHGK 387



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI  Y + G  +EA+  F +  L +  +P+  T   VL AC  L     G+ +H  +   
Sbjct: 174 MIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 232

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +++V V  +L+ MY + G    AR +FD +  +D  +WN+MI GY   G + EAL + 
Sbjct: 233 GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLF 292

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M   G+    IT   IL  C  S  +  G  I   +  ++G+E  +     ++N+  +
Sbjct: 293 KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 352

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  +   M +E D V W +++ A
Sbjct: 353 AGHVEQAYELVKNMNIEPDPVLWGTLLGA 381


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/616 (38%), Positives = 363/616 (58%), Gaps = 18/616 (2%)

Query: 99  AMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI--- 155
           ++ S  C  G    AL +L ++   GV  DP+++  ++ +C R   +  G  IH ++   
Sbjct: 36  SIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLC 95

Query: 156 ---VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP- 211
                     +LFVSN+L++MYAKFGM+  AL +F  M +R+VVSW +++AA   +N P 
Sbjct: 96  AHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAAL--ANAPG 153

Query: 212 --ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
               A  F   M++ G+  +  T    +S++          ++H  I++ G    DV + 
Sbjct: 154 RKKEALRFLVEMRRDGVAANSYTF---SSVLGACGTPGVLAAMHADIIKVG-LDSDVFVR 209

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           ++++D Y KLG ++S   VF+ +   D++ WN++I G+AQ+G    A+E+F  M+E   +
Sbjct: 210 SSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFL 269

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
             NQGT  S+L A + +  L  G ++HA V+K     D+ +   L+DMY KCG + DA +
Sbjct: 270 -ANQGTLTSVLRACTGMVMLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADA 326

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF ++     + W+ +IS    +G+  +AL  F  M  EG  P++IT V +L ACSH+GL
Sbjct: 327 LFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGL 386

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G  YF  M + FGI+P  +H  CMVDL GRAG L  A  FI  M   PD+ IW  LL
Sbjct: 387 VEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLL 446

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACR+H N  L + A+  + +++ E+ G  +L+SNIYA++ +W   ++     RD+G+KK
Sbjct: 447 GACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKK 506

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG S IE+   V +F  G  +HP  ++I  EL  L  + K LGYVP   FVLQD+  ++
Sbjct: 507 EPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQ 566

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE +L  HSE+LAIAFG ++S    P++I KNLR+CGDCH + K +S+   + II+RD  
Sbjct: 567 KEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPV 626

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF+ G+CSCGDYW
Sbjct: 627 RFHHFQHGVCSCGDYW 642



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 221/428 (51%), Gaps = 30/428 (7%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSV------LKLGFEWDVFVAASLLHMYC 74
            +G+R D  +   ++K C     + DG+ IH  V              +FV+ SL+ MY 
Sbjct: 59  AAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFVSNSLVSMYA 118

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQS-GNAVEALDILDEMRLEGVSMDPITVA 133
           +FG+ + A +LF  MP R+  SW  +++    + G   EAL  L EMR +GV+ +  T +
Sbjct: 119 KFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFS 178

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+L  C  +  +L+ +  H  I+K GL+ ++FV ++LI+ Y K G +     VFD+M+  
Sbjct: 179 SVLGACG-TPGVLAAM--HADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTC 235

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D+V WNSIIA + QS D + A   F  M+++G   +  TL S+      +      R VH
Sbjct: 236 DLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVH 295

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
             +++   +  D+I+ NA++DMY K G +  A A+F  +  +DVISW+T+I+G AQNG +
Sbjct: 296 AHVLK---YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRS 352

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV--- 370
            EA++VF +M +     PN  T V +L A SH G +  G      + K    F +     
Sbjct: 353 VEALKVFDLM-KAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDK---LFGIQPERE 408

Query: 371 -ATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQML-- 426
              C+VD+ G+ G++D+AM    ++     SV W  ++    +H     A     ++L  
Sbjct: 409 HCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKL 468

Query: 427 ---DEGVR 431
              D+G R
Sbjct: 469 EPEDQGAR 476



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 30/333 (9%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           GR  EA+    +     G+  + YTF  VL AC        +H  ++K+G + DVFV +S
Sbjct: 153 GRKKEALRFLVEMR-RDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSS 211

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y + G  +  R +FD+M   D   WN++I+G+ QSG+ V A+++   M+  G   +
Sbjct: 212 LIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLAN 271

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+L  C     +  G  +H +++K+  + +L + N L++MY K G +  A  +F 
Sbjct: 272 QGTLTSVLRACTGMVMLEVGRQVHAHVLKY--DRDLILHNALLDMYCKCGCLLDADALFS 329

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M +RDV+SW+++I+   Q+   + A   F  M+  G  P+ +T+V +      L  C  
Sbjct: 330 RMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGV------LFACS- 382

Query: 249 SRSVHGFIMRRGWFM---EDVIIG--------NAVVDMYAKLGIINSACAVFEGLPVK-D 296
               H  ++  GW      D + G        N +VD+  + G ++ A      +  + D
Sbjct: 383 ----HAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPD 438

Query: 297 VISWNTLITG---YAQNGLAS-EAIEVFQMMEE 325
            + W TL+     +    LAS  A E+ ++  E
Sbjct: 439 SVIWRTLLGACRMHKNATLASYAATEILKLEPE 471


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/567 (40%), Positives = 347/567 (61%), Gaps = 6/567 (1%)

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           S ++  GL +H +I+K GL+    +S++LIN Y+K  +   +L++F     +   +W+S+
Sbjct: 33  SRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSV 92

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+++ Q++ P+ +  +F  M + G+ PD     S T     L+    ++ +H F ++  +
Sbjct: 93  ISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAY 152

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + D+ +G++V+DMYAK G I  A  VF+ +P ++V+SW+ LI GY Q G   E++ +F+
Sbjct: 153 HL-DIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFK 211

Query: 322 --MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
             ++EE NE   N  T  S+L        L+ G  IH    K       FVA+ L+ +Y 
Sbjct: 212 RFLVEEENE-GVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYS 270

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFV 438
           KCG +++A  +F +V   +   WNA++     H   DK    F +M    G++ + ITF+
Sbjct: 271 KCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFL 330

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L ACSH+GLV +G+ YF +M++ +GI+P  +HY  MVDL GRAG L  A   I+ MP+
Sbjct: 331 CVLYACSHAGLVEKGKYYFELMKD-YGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPM 389

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            P  S+WGALL  CR+HGN +L +  +DR+ E+ S + G +V++SN YA  G+WE   + 
Sbjct: 390 EPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKA 449

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R + RDRG+KK  G S +E  N++  F  G+R+H K  +IYD+L  L  +M   GYV D 
Sbjct: 450 RKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADT 509

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
           SFVL++V+ +EK   +  HSERLAIAFG I+ P   PI++ KNLRVCGDCH   KFIS+ 
Sbjct: 510 SFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKC 569

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
           T R IIVRD+NRFH F+DG C+CGDYW
Sbjct: 570 TGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 217/443 (48%), Gaps = 26/443 (5%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           L   R+L  G ++H  ++KLG +    ++  L++ Y +  L   + ++F D P + + +W
Sbjct: 30  LTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTW 89

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL----LIHL 153
           +++IS + Q+   + +L+    M  +GV  D      I P   +S  ILS L    ++H 
Sbjct: 90  SSVISSFAQNDLPLLSLNYFRLMLRQGVPPDD----HIFPSATKSCGILSSLPVAKMLHC 145

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           + +K     ++FV +++I+MYAK G + +A  VFD+M  R+VVSW+ +I  Y Q  +   
Sbjct: 146 FALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDE 205

Query: 214 A----HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +      F    +  G+     TL S+  +       +  R +HG   +   F     + 
Sbjct: 206 SLRLFKRFLVEEENEGVND--FTLSSVLRVCGGSTLLQMGRLIHGLSFKTS-FDSSCFVA 262

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           ++++ +Y+K G++  A  VFE + V+++  WN ++   AQ+    +  E+F  M+    +
Sbjct: 263 SSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGM 322

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRID 385
             N  T++ +L A SH G + +G K +  ++K+   + +   T     +VD+ G+ G+++
Sbjct: 323 KANFITFLCVLYACSHAGLVEKG-KYYFELMKD---YGIEPGTQHYSTMVDLLGRAGKLN 378

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           DA+ L  ++P   +   W A+++   +HG   K  ++    + E         V L  A 
Sbjct: 379 DAVKLIEEMPMEPTESVWGALLTGCRLHGN-TKLASYVADRVSELGSVSSGLHVMLSNAY 437

Query: 445 SHSGLVSEGQRYFHMMQEEFGIK 467
           + +G   E  +   MM++  GIK
Sbjct: 438 AAAGRWEEAAKARKMMRDR-GIK 459



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 30/354 (8%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           +++  L  G+ PD + FP   K+C    +L   K +HC  LK  +  D+FV +S++ MY 
Sbjct: 108 YFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYA 167

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL--EGVSMDPITV 132
           + G    A  +FD+MP R+  SW+ +I GY Q G   E+L +     +  E   ++  T+
Sbjct: 168 KCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTL 227

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           +S+L VC  S  +  G LIH    K   + + FV+++LI++Y+K G++  A  VF+++  
Sbjct: 228 SSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTV 287

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           R++  WN+++ A  Q          F  M+   G++ + +T + +      L  C     
Sbjct: 288 RNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCV------LYACS---- 337

Query: 252 VHGFIMRRGWF----MEDVIIG------NAVVDMYAKLGIINSACAVFEGLPVKDVIS-W 300
            H  ++ +G +    M+D  I       + +VD+  + G +N A  + E +P++   S W
Sbjct: 338 -HAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVW 396

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
             L+TG   +G    A  V   + E   +  + G +V +  AY+  G   +  K
Sbjct: 397 GALLTGCRLHGNTKLASYVADRVSELGSV--SSGLHVMLSNAYAAAGRWEEAAK 448


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 374/703 (53%), Gaps = 18/703 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFE-WDVF 64
           G+L+EA + F+Q    +G+    Y++  + +ACR   +L  G+ +H + +++G E   V 
Sbjct: 60  GKLNEAFE-FFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLH-NRMRMGIENPSVL 117

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           +   +L MYC  G    A KLFD+M   ++ S   MIS Y + G   +A+ +   M   G
Sbjct: 118 LQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESG 177

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
                    ++L        +  G  IH ++++ GL  N  +   ++NMY K G +  A 
Sbjct: 178 DKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAK 237

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           RVFDQM  +  V+W  ++  Y Q+     A   F  +   G++ D      +    A L 
Sbjct: 238 RVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLE 297

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
           + R  + +H  + + G   E V +G  +VD Y K     SAC  F+ +   + +SW+ +I
Sbjct: 298 ELRFGKQIHACVAKLGLECE-VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAII 356

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           +GY Q     EA++ F+ +   N +  N  TY SI  A S +     G ++HA  IK  L
Sbjct: 357 SGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSL 416

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
               +  + L+ MY KCG +DDA  +F  +     V W A IS H  +G   +AL  F +
Sbjct: 417 IGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 476

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M+  G++P+ +TF+++LTACSH+GLV +G+ Y   M  ++ + P + HY CM+D++ R+G
Sbjct: 477 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSG 536

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544
            L  A  F++NMP  PDA  W   L  C  H N+ELG +A + L ++D E+   YVL  N
Sbjct: 537 LLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFN 596

Query: 545 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 604
           +Y   GKWE   EV  L  +R LKK    S I+   K+  F  G++ HP+ ++IY++L+ 
Sbjct: 597 LYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKE 656

Query: 605 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS--SPPKSPIQIFKNL 662
                   G++    F     E  E+   L  HSERLAIAFG+IS     ++PI++FKNL
Sbjct: 657 FD------GFMEGDMFQCSMTERREQ---LLDHSERLAIAFGLISVNGNARAPIKVFKNL 707

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           R C DCH + K +S +T  EI++RDS RFHHFK+G CSC DYW
Sbjct: 708 RACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 21/432 (4%)

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF-NL 164
           + G   EA +   EM   GVS+   +   +   C    ++  G L+H  + + G+E  ++
Sbjct: 58  KHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRM-RMGIENPSV 116

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            + N ++ MY + G +  A ++FD+M + + VS  ++I+AY +      A G F+ M ++
Sbjct: 117 LLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLES 176

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G +P      +L   +         R +H  ++R G    +  I   +V+MY K G +  
Sbjct: 177 GDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAG-LCSNASIETGIVNMYVKCGWLVG 235

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAY 343
           A  VF+ + VK  ++W  L+ GY Q G A +A+++F  ++ E   +  +   +  +L A 
Sbjct: 236 AKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITE--GVEWDSFVFSVVLKAC 293

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           + +  LR G +IHA V K  L  +V V T LVD Y KC   + A   F ++   + V W+
Sbjct: 294 ASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWS 353

Query: 404 AIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           AIIS +    Q ++A+  F+ +  +  V  +  T+ S+  ACS     + G +       
Sbjct: 354 AIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQV-----H 408

Query: 463 EFGIKPHL--KHYG--CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
              IK  L    YG   ++ ++ + G L  AH   ++M   PD   W A +     +GN 
Sbjct: 409 ADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMD-NPDIVAWTAFISGHAYYGN- 466

Query: 519 ELGAVASDRLFE 530
              A  + RLFE
Sbjct: 467 ---ASEALRLFE 475



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y +  +  EAV  F      + +  + +T+  + +AC  L D   G ++H   +K 
Sbjct: 355 IISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKR 414

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                 +  ++L+ MY + G  + A ++F+ M   D  +W A ISG+   GNA EAL + 
Sbjct: 415 SLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLF 474

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
           ++M   G+  + +T  ++L  C+ +  +  G   +   + K+ +   +   + +I++YA+
Sbjct: 475 EKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYAR 534

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  ALR    M  E D +SW   ++ 
Sbjct: 535 SGLLDEALRFMKNMPFEPDAMSWKCFLSG 563


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/691 (37%), Positives = 383/691 (55%), Gaps = 14/691 (2%)

Query: 27  LRPDFYTFPPVLKAC-------RNLVDGKKIHCSVLKL-GFEWDVFVAASLLHMYCRFGL 78
           +RP     P +L A        R+   G+  H   L+L       F+ A L+++Y +  L
Sbjct: 1   MRPAAAADPQLLGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDL 60

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL-- 136
              A       P     S+ A ISG  Q    + AL     M   G+  +  T  S    
Sbjct: 61  PAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKA 120

Query: 137 PVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
             CA       G  IH   ++ G L  + FVS   ++MY K G +  A R+F++M  R+V
Sbjct: 121 AACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNV 180

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           ++WN+++        P+     +  +++AG  P+++++ +  +  A           HGF
Sbjct: 181 IAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGF 240

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           ++  G+ M DV + NA+VD Y K      A AVF+G+ V++ +SW ++I  YAQ+G   +
Sbjct: 241 VVTCGFDM-DVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEED 299

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+ V+       E  P      S+L   + +  L  G  +HA  +++C+  ++FVA+ LV
Sbjct: 300 ALAVYMGARNTGE-EPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALV 358

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDH 434
           DMYGKCG ++DA  +F  +P  + V WNA+I  +   G    AL  F  M+  G   P+H
Sbjct: 359 DMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNH 418

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           IT V+++TACS  GL  +G   F  M+E FG++P  +HY C+VDL GRAG    A+  IQ
Sbjct: 419 ITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQ 478

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
            MP+RP  S+WGALLGAC++HG  ELG +AS++LFE+D ++ G +VL+SN+ A+ G+W  
Sbjct: 479 RMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAE 538

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
             +VR   ++ G+KK PG S I   N V +FY  +  H +  +I   L  L  +M++ GY
Sbjct: 539 ATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGY 598

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
           +PD  + L DVEE+EKE  +  HSE+LA+AFG+I  PP  PI+I KNLR+C DCH   KF
Sbjct: 599 MPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKF 658

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +S I  REIIVRD+NRFH+FK   CSC DYW
Sbjct: 659 VSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 198/405 (48%), Gaps = 15/405 (3%)

Query: 23  LTSGLRPDFYTFPPVLKAC-----RNLVDGKKIHCSVLKLGF-EWDVFVAASLLHMYCRF 76
           L  GLRP+ +TFP   KA      R    G +IH   L+ G+   D FV+ + + MY + 
Sbjct: 103 LRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKT 162

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G   +AR+LF++MP R+  +WNA+++     G  +E       +R  G   + ++V +  
Sbjct: 163 GCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFF 222

Query: 137 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196
             CA +  +  G   H ++V  G + ++ VSN +++ Y K      A  VFD M  R+ V
Sbjct: 223 NACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSV 282

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
           SW S+I AY Q      A   +   +  G +P    + S+ +  A L      R++H  +
Sbjct: 283 SWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHA-V 341

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
             R     ++ + +A+VDMY K G +  A  VF  +P +++++WN +I GYA  G A  A
Sbjct: 342 AVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNA 401

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT---- 372
           + VF  M      +PN  T V+++ A S  G  + G ++   + +    F V   T    
Sbjct: 402 LAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRER---FGVEPRTEHYA 458

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGD 416
           C+VD+ G+ G  + A  +  ++P   S+  W A++    +HG+ +
Sbjct: 459 CVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTE 503



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 6/308 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFV 65
           GR  E    ++      G+ P+  +      AC     L  G++ H  V+  GF+ DV V
Sbjct: 194 GRPLETFKAYFGLREAGGM-PNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSV 252

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           + +++  Y +   A  AR +FD M VR+S SW +MI  Y Q G   +AL +    R  G 
Sbjct: 253 SNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGE 312

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                 V+S+L  CA    +  G  +H   V+  ++ N+FV++ L++MY K G +  A +
Sbjct: 313 EPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQ 372

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLN 244
           VF  M ER++V+WN++I  Y    D   A   F  M +  G  P+ +TLV++ +  ++  
Sbjct: 373 VFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGG 432

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTL 303
             ++   +   +  R            VVD+  + G+   A  + + +P++  IS W  L
Sbjct: 433 LTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGAL 492

Query: 304 ITGYAQNG 311
           +     +G
Sbjct: 493 LGACKMHG 500


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 368/601 (61%), Gaps = 28/601 (4%)

Query: 127 MDPITVASIL--PVCARSDNILSGL---------LIHLYIVKHGLEFNLFVSNNLINMYA 175
           M P +  S+L  P+  +  N+L             IH + ++HG+     +S+  +  + 
Sbjct: 1   MSPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVS----ISDAELGKHL 56

Query: 176 KFGM--------MRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG- 225
            F +        M +A +VF ++ +  +V  WN++I  Y +  + I+A   +  M+ +G 
Sbjct: 57  IFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL 116

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++PD  T   L   V  + D R   ++H  ++R G F   + + N+++ +YA  G + SA
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG-FGSLIYVQNSLLHLYANCGDVASA 175

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF+ +P KD+++WN++I G+A+NG   EA+ ++  M     I P+  T VS+L A + 
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSLLSACAK 234

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
           +GAL  G ++H  +IK  L  ++  +  L+D+Y +CGR+++A +LF ++   +SV W ++
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 294

Query: 406 ISCHGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           I    ++G G +A+  F+ M   EG+ P  ITFV +L ACSH G+V EG  YF  M+EE+
Sbjct: 295 IVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 354

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            I+P ++H+GCMVDL  RAG +  A+ +I++MP++P+  IW  LLGAC +HG+ +L   A
Sbjct: 355 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFA 414

Query: 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 584
             ++ +++  + G YVL+SN+YA+  +W  V ++R      G+KK PG S +EV N+V  
Sbjct: 415 RIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHE 474

Query: 585 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 644
           F  G+++HP+ + IY +L+ +T +++S GYVP  S V  DVEE+EKE+ +  HSE++AIA
Sbjct: 475 FLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIA 534

Query: 645 FGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           F +IS+P +SPI + KNLRVC DCH   K +S++  REI+VRD +RFHHFK+G CSC DY
Sbjct: 535 FMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDY 594

Query: 705 W 705
           W
Sbjct: 595 W 595



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 185/342 (54%), Gaps = 8/342 (2%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN +I GY + GN++ A  +  EMR+ G V  D  T   ++       ++  G  IH  +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           ++ G    ++V N+L+++YA  G +  A +VFD+M E+D+V+WNS+I  + ++  P  A 
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             +T M   GI+PD  T+VSL S  A++      + VH ++++ G    ++   N ++D+
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG-LTRNLHSSNVLLDL 266

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YA+ G +  A  +F+ +  K+ +SW +LI G A NG   EAIE+F+ ME    + P + T
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEIT 326

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +V IL A SH G +++G +   R+ +   +   +    C+VD+  + G++  A      +
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM 386

Query: 395 P-RSSSVPWNAIISCHGIHGQGDKALNFFR-QMLDEGVRPDH 434
           P + + V W  ++    +HG  D A  F R Q+L   + P+H
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA-EFARIQILQ--LEPNH 425



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 184/360 (51%), Gaps = 29/360 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G    A   + +  ++  + PD +T+P ++KA   + D   G+ IH  V++ 
Sbjct: 91  LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   ++V  SLLH+Y   G    A K+FD MP +D  +WN++I+G+ ++G   EAL + 
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  +G+  D  T+ S+L  CA+   +  G  +H+Y++K GL  NL  SN L+++YA+ 
Sbjct: 211 TEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLVSL 236
           G +  A  +FD+M++++ VSW S+I     +     A   F  M+   G+ P  +T V +
Sbjct: 271 GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGI 330

Query: 237 TSIVAQLNDCRNSRSV-HGF----IMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFE 290
                 L  C +   V  GF     MR  + +E  I     +VD+ A+ G +  A    +
Sbjct: 331 ------LYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIK 384

Query: 291 GLPVK-DVISWNTLI---TGYAQNGLASEA-IEVFQMMEECNEINPNQ-GTYVSILPAYS 344
            +P++ +V+ W TL+   T +  + LA  A I++ Q+        PN  G YV +   Y+
Sbjct: 385 SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL-------EPNHSGDYVLLSNMYA 437


>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
 gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
          Length = 809

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/724 (34%), Positives = 389/724 (53%), Gaps = 26/724 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           ++  Y   G  ++A++ F+Q  + +G+ PD   F   L  C   + L DG  IH  +   
Sbjct: 93  ILVAYFHAGLHAQALERFHQM-IKAGVEPDRLVFLAALNVCGILKRLEDGAGIHRQIQDK 151

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D+ +  +L+ MY + G  ++A++LFD + +++  SW  ++S + ++G   E   +L
Sbjct: 152 LLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKNVISWTILVSVFAENGRRRETWGLL 211

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILS--GLLIHLYIVKHGLEFNLFVSNNLINMYA 175
             M +EG+  D + + ++L VC+ S  +L     + H YIV  GL+    V+  L++M+A
Sbjct: 212 RSMAVEGIKPDKVLLLTLLNVCS-SRGVLDEDSWMAHDYIVGSGLDREAVVATALLSMFA 270

Query: 176 KFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           + G +  A  +F+++ +     +  WN++I AY        A     ++Q  G++P+ +T
Sbjct: 271 RCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCIT 330

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            +S     + L D    R++H  I   G F  +V + NA+V MY + G +  +  +F  +
Sbjct: 331 FISSLGACSSLQD---GRALHLLIDESG-FDREVSVANALVTMYGRCGSLLDSAKLFSEM 386

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             KD+ SWN+ I  +A +G + E I++   M     + P+  T V+ + A   +      
Sbjct: 387 AEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGEGGLEPSSVTLVTAMSACGGLADPSSS 446

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            ++H R  +  L  +  VA  LVDMYGK G +D A  +F +  R +   WNA+   +   
Sbjct: 447 KRVHERARELGLESETCVANGLVDMYGKAGDVDTARYIFDRALRRNVTTWNAMAGAYRQC 506

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G     L   R M  +G RPD +TFVSLL+ C HSGL+ E +  F  M+ EFGI P  KH
Sbjct: 507 GVTRGVLWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAMRREFGIDPSPKH 566

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS--IWGALLGACRIHGNMELGAVASDRLFE 530
           Y C++DL  RAG L  A +FI  + V   AS  +W ALLGACR  G+             
Sbjct: 567 YSCVIDLLARAGELQQAEDFIARISVSSPASSPMWMALLGACRSLGDSSS-RARRAARNA 625

Query: 531 VDSENV---------GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
           +D E +           +V ++NI A  G W+    +R    ++GL+K PG S I V N+
Sbjct: 626 MDVEKMEPRSQHDPSAAHVALANICAASGNWDEALSIRKAMAEKGLRKEPGRSLIAVKNR 685

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           +  F  G+R HP+ E+IY ELR L   M   GYV D   V  +V E +K  +L  HSE+L
Sbjct: 686 LHEFVAGDRDHPRREEIYAELRRLERAMVDRGYVVDTGMVTHNVGEADKRDLLGCHSEKL 745

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AFG++S+PP S ++I KNLR CGDCH   K IS I  REI+VRDSNRFHHF++G CSC
Sbjct: 746 AVAFGVLSTPPGSSLRIIKNLRACGDCHTAIKLISAIEGREIVVRDSNRFHHFRNGSCSC 805

Query: 702 GDYW 705
           GDYW
Sbjct: 806 GDYW 809



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 254/509 (49%), Gaps = 26/509 (5%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD-------VFVAASLLHMYC 74
           SG+     ++  +LK C  L D   GK++H  + + G   D        F+   L+ MY 
Sbjct: 8   SGVDDACRSYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYG 67

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G  + A++ FD +  ++  SW +++  Y  +G   +AL+   +M   GV  D +   +
Sbjct: 68  KCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLA 127

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
            L VC     +  G  IH  I    L+ +L + N L++MY K G +  A ++FD +  ++
Sbjct: 128 ALNVCGILKRLEDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKN 187

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD---LLTLVSLTSIVAQLNDCRNSRS 251
           V+SW  +++ + ++       G   +M   GI+PD   LLTL+++ S    L++  +S  
Sbjct: 188 VISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDE--DSWM 245

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYA 308
            H +I+  G   E  ++  A++ M+A+ G ++ A  +FE +     + +  WN +IT YA
Sbjct: 246 AHDYIVGSGLDRE-AVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYA 304

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
             G + EA+ +   + +   + PN  T++S L A S   +L+ G  +H  + ++    +V
Sbjct: 305 HRGCSKEALFLLDSL-QLQGVKPNCITFISSLGACS---SLQDGRALHLLIDESGFDREV 360

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
            VA  LV MYG+CG + D+  LF ++       WN+ I+ H  HG+ D+ +    QM  E
Sbjct: 361 SVANALVTMYGRCGSLLDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGE 420

Query: 429 -GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+ P  +T V+ ++AC      S  +R  H    E G++        +VD++G+AG + 
Sbjct: 421 GGLEPSSVTLVTAMSACGGLADPSSSKR-VHERARELGLESETCVANGLVDMYGKAGDVD 479

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHG 516
            A  +I +  +R + + W A+ GA R  G
Sbjct: 480 TA-RYIFDRALRRNVTTWNAMAGAYRQCG 507


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/594 (39%), Positives = 353/594 (59%), Gaps = 44/594 (7%)

Query: 149 LLIHLYIVKHGLEFNL---FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           L IH  I++H L  +     ++  L   YA  G +RH+L +F Q ++ D+  + + I   
Sbjct: 44  LQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTA 103

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC--RNSRSVHGFIMRRGWFM 263
             +     A   +  +  + I P+  T  S+      L  C  ++ + +H  +++ G  +
Sbjct: 104 SINGLKDQAFLLYVQLLSSQINPNEFTFSSI------LKSCSTKSGKLIHTHVLKFGLGL 157

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---------------------------- 295
            D  +   +VD+YAK G + SA  VF+ +P +                            
Sbjct: 158 -DPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRM 216

Query: 296 ---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
              D++SWN +I GY+Q+G  S+A+ +FQ +    +  P++ T V+ L A S +GAL  G
Sbjct: 217 CERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETG 276

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             IH  V  + +  +V V T L+DMY KCG +++A+ +F   PR   V WNA+I+ + +H
Sbjct: 277 RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMH 336

Query: 413 GQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           G    AL  F +M    G++P  ITF+  L AC+H+GLV+EG + F  M +E+GIKP ++
Sbjct: 337 GYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIE 396

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGC+V L GRAG L  A+  I+NM +  D+ +W ++LG+C++HG   LG   ++ L   
Sbjct: 397 HYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQ 456

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           +  N G YVL+SNIYA VG +EGV +VR+L +++G+ K PG S+IE++NKV  F  G+R 
Sbjct: 457 NISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDRE 516

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           H K ++IY  LR ++ ++KS GYVP+ + VL D+EE EKE  L  HSERLAIA+G+IS+ 
Sbjct: 517 HLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTK 576

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P SP++IFKNLRVC DCH  TK IS+IT R+I++RD NRFHHF DG CSC D+W
Sbjct: 577 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 39/324 (12%)

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           ++ +  T +SIL  C+      SG LIH +++K GL  + +V+  L+++YAK G +  A 
Sbjct: 124 INPNEFTFSSILKSCSTK----SGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQ 179

Query: 185 RV-------------------------------FDQMMERDVVSWNSIIAAYEQSNDPIT 213
           +V                               FD+M ERD+VSWN +I  Y Q   P  
Sbjct: 180 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSD 239

Query: 214 AHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
           A   F  +   G  +PD +T+V+  S  +Q+      R +H F+        +V +  A+
Sbjct: 240 ALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFV-NSSRIRLNVKVCTAL 298

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DMY+K G +  A  VF   P KD+++WN +ITGYA +G + +A+ +F  M+    + P 
Sbjct: 299 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPT 358

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
             T++  L A +H G + +GI+I   + +   +   +    CLV + G+ G++  A  + 
Sbjct: 359 DITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEII 418

Query: 392 YQVP-RSSSVPWNAIISCHGIHGQ 414
             +   + SV W++++    +HG+
Sbjct: 419 KNMNMEADSVLWSSVLGSCKLHGE 442



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 120/257 (46%), Gaps = 34/257 (13%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           L +     Y   L+S + P+ +TF  +LK+C +   GK IH  VLK G   D +VA  L+
Sbjct: 108 LKDQAFLLYVQLLSSQINPNEFTFSSILKSC-STKSGKLIHTHVLKFGLGLDPYVATGLV 166

Query: 71  HMYCRFGLANVARKLFDDMPVR-------------------------------DSGSWNA 99
            +Y + G    A+K+FD MP R                               D  SWN 
Sbjct: 167 DIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNV 226

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKH 158
           MI GY Q G   +AL +  ++  +G    D ITV + L  C++   + +G  IH+++   
Sbjct: 227 MIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSS 286

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
            +  N+ V   LI+MY+K G +  A+ VF+    +D+V+WN++I  Y        A   F
Sbjct: 287 RIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLF 346

Query: 219 TTMQQ-AGIQPDLLTLV 234
             MQ   G+QP  +T +
Sbjct: 347 DEMQGITGLQPTDITFI 363



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y + G  S+A+  F +       +PD  T    L AC     L  G+ IH  V   
Sbjct: 227 MIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSS 286

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               +V V  +L+ MY + G    A  +F+D P +D  +WNAMI+GY   G + +AL + 
Sbjct: 287 RIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLF 346

Query: 118 DEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYI-VKHGLEFNLFVSNNLINMYA 175
           DEM+ + G+    IT    L  CA +  +  G+ I   +  ++G++  +     L+++  
Sbjct: 347 DEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLG 406

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G ++ A  +   M ME D V W+S++ +
Sbjct: 407 RAGQLKRAYEIIKNMNMEADSVLWSSVLGS 436


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/627 (38%), Positives = 359/627 (57%), Gaps = 7/627 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ Y +CGR   +++ F Q   T+ + PD Y    VL AC     L  GK+IH  VL+ 
Sbjct: 109 IIAGYTKCGRSXVSLELFAQMRETN-VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DV V   L+  Y +       RKLFD M V++  SW  MISGY Q+    EA+ + 
Sbjct: 168 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 227

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G   D     S+L  C   + +  G  +H Y +K  LE N FV N LI+MYAK 
Sbjct: 228 GEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKS 287

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            ++  A +VFD M E++V+S+N++I  Y        A   F  M+     P LLT VSL 
Sbjct: 288 NLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            + A L     S+ +HG I++ G  + D+  G+A++D+Y+K   +  A  VFE +  KD+
Sbjct: 348 GVSASLFALELSKQIHGLIIKXGVSL-DLFAGSALIDVYSKCSYVKDARHVFEEMNEKDI 406

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN +  GY Q+    EA++++  ++   +  PN+ T+ +++ A S++ +LR G + H 
Sbjct: 407 VVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAASNLASLRHGQQFHN 465

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L F  FV   LVDMY KCG I++A  +F        V WN++IS H  HG+ ++
Sbjct: 466 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 525

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  FR+M+ EG++P+++TFV++L+ACSH+G V +G  +F+ M   FGIKP  +HY C+V
Sbjct: 526 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVV 584

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            L GR+G L  A  FI+ MP+ P A +W +LL ACRI GN+ELG  A++     D ++ G
Sbjct: 585 SLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 644

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y+L+SNI+A+ G W  V +VR       + K PG S IEVNNKV++F     TH + + 
Sbjct: 645 SYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADM 704

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQD 624
           I   L  L   +K  GYVPD + +L +
Sbjct: 705 IGSVLDILIQHIKGAGYVPDATALLMN 731



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 263/516 (50%), Gaps = 11/516 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFV 65
           G   EA+  F      SG  P+ +    V++AC  L     G ++H  V++ GF+ DV+V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             SL+  Y + G   VAR +FD +  + + +W  +I+GY + G +  +L++  +MR   V
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D   V+S+L  C+  + +  G  IH Y+++ G E ++ V N LI+ Y K   ++   +
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FDQM+ ++++SW ++I+ Y Q++    A   F  M + G +PD     S+ +    L  
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R VH + ++      +  + N ++DMYAK  ++  A  VF+ +  ++VIS+N +I 
Sbjct: 255 LEQGRQVHAYTIKAN-LESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIE 313

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GY+     SEA+E+F  M       P+  T+VS+L   + + AL    +IH  +IK  + 
Sbjct: 314 GYSSQEKLSEALELFHEM-RVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVS 372

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            D+F  + L+D+Y KC  + DA  +F ++     V WNA+   +  H + ++AL  +  +
Sbjct: 373 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--PHLKHYGCMVDLFGRA 483
                +P+  TF +L+TA S+   +  GQ+ FH    + G+   P + +   +VD++ + 
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTN--ALVDMYAKC 489

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           G +  A     N  +  D   W +++     HG  E
Sbjct: 490 GSIEEARKMF-NSSIWRDVVCWNSMISTHAQHGEAE 524


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/674 (37%), Positives = 376/674 (55%), Gaps = 46/674 (6%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLL-HMYCRFGLA-NVARKLFDDMPVRDS 94
           +L  CR+L + K++H  V K G + D  +A  LL H       A + AR+LF   P  D 
Sbjct: 11  LLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDV 70

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHL 153
              N +I G  +S     +L    EMR      +D  + A +L   A   ++ SG+ +H 
Sbjct: 71  FMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHC 130

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
             + HGL+ +LFV   L++MY++ G +  A +VF++M E +VV+WN+++ A  +  D   
Sbjct: 131 QAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKG 190

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M             +LTS                      W        N ++
Sbjct: 191 ADMMFNRM----------PFRNLTS----------------------W--------NVML 210

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
             Y K G +  A  +F  +PVKD +SW+T+I G+A NG   EA   F+ +++   + PN+
Sbjct: 211 AGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVG-MRPNE 269

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            +    L A +  GA+  G  +H  + K+   + V V   L+D Y KCG +  A  +F +
Sbjct: 270 VSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFER 329

Query: 394 VPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           +P   S V W ++I+   +HG G++A+  F +M + G+RPD I F+S+L ACSH+GL+ +
Sbjct: 330 MPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEK 389

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G  YF+ M++ + I+P ++HYGCMVDL+GRAG L  A+ FI +MPV P A IW  LLGAC
Sbjct: 390 GYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGAC 449

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
            IHGN++L     +RL E+D  N G +VL+SNIYA  GKW+ V  VR    D+ + KTPG
Sbjct: 450 SIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPG 509

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG-YVPDKSFVLQDVEEDEKE 631
           WS IEV+  +  F  G   +   E+ Y++L+ +  K++  G Y+P+   VL D+E++EKE
Sbjct: 510 WSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKE 569

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
             ++ HSE+LA+AFGI      S I+I KNLRVC DCH   K IS++   EI+VRD +RF
Sbjct: 570 DSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRF 629

Query: 692 HHFKDGICSCGDYW 705
           H FK G CSC DYW
Sbjct: 630 HSFKTGSCSCRDYW 643



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 172/365 (47%), Gaps = 42/365 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           ++S+Y  CG ++ A   F +        P+   +  V+ AC    D K       ++ F 
Sbjct: 147 LVSMYSECGFVAFAKKVFEEM-----FEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR 201

Query: 61  ----WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W+V +A      Y + G   +ARKLF +MPV+D  SW+ MI G+  +G   EA   
Sbjct: 202 NLTSWNVMLAG-----YTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGF 256

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             E++  G+  + +++   L  CA +  I  G ++H +I K G  + + V+N L++ Y+K
Sbjct: 257 FRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSK 316

Query: 177 FGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            G +  A  VF++M E R +VSW S+IA          A   F  M+++GI+PD +  +S
Sbjct: 317 CGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFIS 376

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRG----WFMEDVI-IGNAV------VDMYAKLGIINS 284
           +      L  C      H  ++ +G    + M+D+  I  A+      VD+Y + G ++ 
Sbjct: 377 I------LYACS-----HAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDK 425

Query: 285 ACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPA 342
           A      +PV    I W TL+   + +G    A  V    E  +E++P N G +V +   
Sbjct: 426 AYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERV---KERLSELDPNNSGDHVLLSNI 482

Query: 343 YSHVG 347
           Y+  G
Sbjct: 483 YAVAG 487



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 140/345 (40%), Gaps = 62/345 (17%)

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL-GIINSACAVFEGLPVK 295
           +S++      +N + VH ++ + G   + +I G  ++     +   ++ A  +F   P  
Sbjct: 9   SSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNP 68

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           DV   NTLI G A++     ++  F  M        +  ++  +L A +   +L  GI++
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL 128

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS----CHGI 411
           H + I + L   +FV T LV MY +CG +  A  +F ++   + V WNA+++    C  +
Sbjct: 129 HCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDV 188

Query: 412 HGQG---------------------DKA--LNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            G                        KA  L   R++  E    D +++ +++   +H+G
Sbjct: 189 KGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNG 248

Query: 449 LVSEGQRYFHMMQE-----------------------EFGIKPH--LKHYG--------- 474
              E   +F  +Q+                       EFG   H  ++  G         
Sbjct: 249 FFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNN 308

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            ++D + + G++GMA    + MP +     W +++    +HG  E
Sbjct: 309 ALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGE 353


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 353/572 (61%), Gaps = 11/572 (1%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           IL  CA S     G   H  I+K G E+++ +   L++ YAK G ++ A RVF  M  RD
Sbjct: 16  ILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRD 75

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+ N++I+A  +      A   F  M +     +  +  S+ +   +L D  ++R    
Sbjct: 76  VVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCKLGDINSAR---- 127

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL-PVKDVISWNTLITGYAQNGLA 313
            +M     ++DV+  NA++D Y K   + +A  +F  +   ++ ++WNT+I+ Y Q G  
Sbjct: 128 -LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEF 186

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
             AI +FQ M+  N + P + T VS+L A +H+GAL  G  IH  +    L  DV +   
Sbjct: 187 GTAISMFQQMQSEN-VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNA 245

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+DMY KCG ++ A+ +F+ + R +   WN+II   G++G+G++A+  F  M  EG++PD
Sbjct: 246 LIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPD 305

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +TFV +L+ CSHSGL+S GQRYF  M   +G++P ++HYGCMVDL GRAG+L  A   I
Sbjct: 306 GVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELI 365

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
           + MP++P++ + G+LL AC+IH + +LG   + +L E+D  + G YV +SN+YA++ +W+
Sbjct: 366 RAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWD 425

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
            V+  R L   RG+ KTPG SSIEVNN V  F  G+ +HP++ +I   L  +  ++K  G
Sbjct: 426 DVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQG 485

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           +VP+ + VL D+EE+EKE  +  HSER+A+AFG++S+PP   I++ KNLR C DCH+  K
Sbjct: 486 HVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMK 545

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            IS   +REIIVRD  RFHHF++G CSC DYW
Sbjct: 546 LISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 206/412 (50%), Gaps = 18/412 (4%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L + + P   +F  +L++C    +   G+  HC ++K+GFE+D+ +   LL  Y + G  
Sbjct: 2   LRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDL 61

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             A+++F  MP RD  + NAMIS   + G   EA ++ D M       +  +  S++   
Sbjct: 62  KCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITCY 117

Query: 140 ARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVS 197
            +  +I S  L+     VK  + +N      +I+ Y K   +  A  +F  M   R+ V+
Sbjct: 118 CKLGDINSARLMFDCNPVKDVVSWNA-----IIDGYCKSKQLVAAQELFLLMGSARNSVT 172

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++I+AY Q  +  TA   F  MQ   ++P  +T+VSL S  A L        +HG+I 
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYI- 231

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           R      DV++GNA++DMY K G + +A  VF GL  K++  WN++I G   NG   EAI
Sbjct: 232 RTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAI 291

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVD 376
             F +ME+   I P+  T+V IL   SH G L  G +  + ++    L   V    C+VD
Sbjct: 292 AAFIVMEK-EGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 377 MYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           + G+ G + +A+ L   +P + +S+   +++    IH          +Q+L+
Sbjct: 351 LLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLE 402



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 125/266 (46%), Gaps = 9/266 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKL 57
           MIS YV+CG    A+  F Q   +  ++P   T   +L AC +L  +D G+ IH  +   
Sbjct: 176 MISAYVQCGEFGTAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK 234

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + DV +  +L+ MYC+ G    A  +F  +  ++   WN++I G   +G   EA+   
Sbjct: 235 RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAF 294

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
             M  EG+  D +T   IL  C+ S  + +G      ++  +GLE  +     ++++  +
Sbjct: 295 IVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGR 354

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP-DLLTLV 234
            G ++ AL +   M M+ + +   S++ A +   D  T  G   T Q   + P D    V
Sbjct: 355 AGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKD--TKLGEQVTQQLLELDPCDGGNYV 412

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRG 260
            L+++ A L+   +  +    +++RG
Sbjct: 413 FLSNLYASLSRWDDVNTCRKLMIKRG 438


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/627 (39%), Positives = 369/627 (58%), Gaps = 20/627 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  +   G+   A+  FY   L  G  PD YTFP V+KAC  L     G+ +H  +  +
Sbjct: 118 MIRGFTMMGQFDFAL-LFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFM 176

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFV +SL+  Y   G  + AR LFD MP +D   WN M++GY ++G+   A  + 
Sbjct: 177 GFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVF 236

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN--LINMYA 175
            EMR    + + +T A +L VCA    I  G  +H  +V  GLE +  V+N   LI++Y 
Sbjct: 237 MEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYF 296

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K   +  A ++FDQ    D+V   ++I+ Y  +     A   F  + Q  ++ + +TL S
Sbjct: 297 KCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLAS 356

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +    A L      + +HG I++ G       +G+A++DMYAK G ++ A   F G+  K
Sbjct: 357 VLPACAGLAALTLGKELHGHILKNG-HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK 415

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMME------ECNEINPNQGTYVSILPAYSHVGAL 349
           D + WN++IT  +QNG   EAI++F+ M       +C  I+       + L A +++ AL
Sbjct: 416 DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS-------AALSACANLPAL 468

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
             G +IHA +++     D+F  + L+DMY KCG +D A  +F  +   + V WN+II+ +
Sbjct: 469 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAY 528

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           G HG+   +LN F  ML +G++PDH+TF+++++AC H+G V EG  YF  M EE GI   
Sbjct: 529 GNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMAR 588

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HY CMVDLFGRAG L  A   I +MP  PDA +WG LLGACR+HGN+EL  VAS  LF
Sbjct: 589 MEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLF 648

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           ++D +N GYYVL+SN++AN G+WE V ++RSL ++RG++K PG S I+VNN   +F   +
Sbjct: 649 DLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAAD 708

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVP 616
           R+HP+  +IY  L+NL  +++  GYVP
Sbjct: 709 RSHPQSSQIYLLLKNLFLELRKEGYVP 735



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 239/487 (49%), Gaps = 7/487 (1%)

Query: 37  VLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+ C +   L  G++ H  +L  G  ++  +   LL MY   G    A+ +F  + +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S  WN MI G+   G    AL    +M   G   D  T   ++  C   +++  G ++H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            I   G E ++FV ++LI  Y++ G +  A  +FD+M  +D V WN ++  Y ++ D   
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-AV 272
           A G F  M++    P+ +T   + S+ A          +HG ++  G  M+  +    A+
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFAL 291

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +D+Y K   +  A  +F+     D++    +I+GY  NG+ + A+E+F+ + +   +  N
Sbjct: 292 IDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQ-ERMRAN 350

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             T  S+LPA + + AL  G ++H  ++KN      +V + ++DMY KCGR+D A   F 
Sbjct: 351 SVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI 410

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +    +V WN++I+    +G+ ++A++ FRQM   G + D ++  + L+AC++   +  
Sbjct: 411 GISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHY 470

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G+   H        +  L     ++D++ + G+L +A      M  + + S W +++ A 
Sbjct: 471 GKE-IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAY 528

Query: 513 RIHGNME 519
             HG ++
Sbjct: 529 GNHGRLK 535



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 9/397 (2%)

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
           S+ P  V SIL  C     +  G   H  ++ +G+ +N  +   L+ MY   G    A  
Sbjct: 44  SLAPQLV-SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKN 102

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F Q+       WN +I  +        A  F+  M   G  PD  T   +      LN 
Sbjct: 103 IFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNS 162

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
               R VH  I   G F  DV +G++++  Y++ G I+ A  +F+ +P KD + WN ++ 
Sbjct: 163 VALGRVVHDKIQFMG-FELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLN 221

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GY +NG    A  VF  M    E NPN  T+  +L   +    +  G ++H  V+ + L 
Sbjct: 222 GYVKNGDWDNATGVFMEMRR-TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLE 280

Query: 366 FDVFVAT--CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
            D  VA    L+D+Y KC  ++ A  +F Q      V   A+IS + ++G  + AL  FR
Sbjct: 281 MDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 340

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            +L E +R + +T  S+L AC+    ++ G+  + H+++   G   ++     ++D++ +
Sbjct: 341 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SAIMDMYAK 398

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            G L +AH     +  + DA  W +++ +C  +G  E
Sbjct: 399 CGRLDLAHQTFIGISDK-DAVCWNSMITSCSQNGKPE 434



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           VSIL   +    L QG + HA+++ N + ++  + T L+ MY  CG   DA ++FYQ+  
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
             S PWN +I    + GQ D AL F+ +ML  G  PD  TF  ++ AC     V+ G R 
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG-RV 168

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H   +  G +  +     ++  +   G +  A      MP + D  +W  +L     +G
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNG 227

Query: 517 NME--LGAVASDRLFEVDSENVGYYVLMS 543
           + +   G     R  E +  +V +  ++S
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLS 256


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 358/605 (59%), Gaps = 50/605 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAK--FGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H ++VK G   +  ++  ++ + A   F  + +AL VFDQ+ ER+  +WN++I A  ++
Sbjct: 34  VHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAET 93

Query: 209 NDP-ITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF---- 262
            D  + A   F  M  +A ++P+  T  S+    A +      + VHG +++ G      
Sbjct: 94  QDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEF 153

Query: 263 --------------MED----------------------------VIIGNAVVDMYAKLG 280
                         MED                            V++ N +VD YA++G
Sbjct: 154 VVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVG 213

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            + +A  +F+ +  + V+SWN +I+GYAQNG   EAIE+F  M +  ++ PN+ T VS+L
Sbjct: 214 NLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVL 273

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
           PA S +G L  G  +H    KN +  D  + + LVDMY KCG I+ A+ +F ++P+++ +
Sbjct: 274 PAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVI 333

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            WNA+I    +HG+ +   N+  +M   G+ P  +T++++L+ACSH+GLV EG+ +F+ M
Sbjct: 334 TWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDM 393

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
               G+KP ++HYGCMVDL GRAG+L  A   I NMP++PD  IW ALLGA ++H N+++
Sbjct: 394 VNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKI 453

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G  A++ L ++   + G YV +SN+YA+ G W+GV  VR + +D  ++K PG S IE++ 
Sbjct: 454 GMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDG 513

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
            +  F   + +H + + I+  L  ++ K+   G++PD + VL  ++E  KE +L  HSE+
Sbjct: 514 VIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEK 573

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           +A+AFG+IS+PPK+P+ I KNLR+C DCH+  K IS++ ER+I++RD  RFHHF+ G CS
Sbjct: 574 IAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCS 633

Query: 701 CGDYW 705
           C DYW
Sbjct: 634 CMDYW 638



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 213/447 (47%), Gaps = 59/447 (13%)

Query: 36  PVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRD 93
           P +KAC+++ + K++H  ++K G   D  +A  +L +       ++  A  +FD +P R+
Sbjct: 20  PQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERN 79

Query: 94  SGSWNAMISGYCQSGNA-VEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLI 151
             +WN +I    ++ +  ++AL +  +M  E  V  +  T  S+L  CA    +  G  +
Sbjct: 80  CFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139

Query: 152 HLYIVKHGLEFNLFVSNNLINM-------------------------------------- 173
           H  ++K GL  + FV  NL+ M                                      
Sbjct: 140 HGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNV 199

Query: 174 ---------YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
                    YA+ G ++ A  +FD+M +R VVSWN +I+ Y Q+     A   F  M Q 
Sbjct: 200 VLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQM 259

Query: 225 G-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           G + P+ +TLVS+   +++L      + VH +  +    ++DV +G+A+VDMYAK G I 
Sbjct: 260 GDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDV-LGSALVDMYAKCGSIE 318

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  VFE LP  +VI+WN +I G A +G A++       ME+C  I+P+  TY++IL A 
Sbjct: 319 KAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCG-ISPSDVTYIAILSAC 377

Query: 344 SHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           SH G + +G      ++ +  L   +    C+VD+ G+ G +++A  L   +P +   V 
Sbjct: 378 SHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVI 437

Query: 402 WNAIISCHGIHGQ---GDKALNFFRQM 425
           W A++    +H     G +A     QM
Sbjct: 438 WKALLGASKMHKNIKIGMRAAEVLMQM 464



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 169/393 (43%), Gaps = 60/393 (15%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVA 66
           R  +A+  F Q    + + P+ +TFP VLKAC     L +GK++H  +LK G   D FV 
Sbjct: 96  RHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVV 155

Query: 67  ASLLHMY-----------------------------------------------CRFGLA 79
            +LL MY                                                R G  
Sbjct: 156 TNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNL 215

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPV 138
             AR+LFD M  R   SWN MISGY Q+G   EA++I   M   G V  + +T+ S+LP 
Sbjct: 216 KAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPA 275

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
            +R   +  G  +HLY  K+ +  +  + + L++MYAK G +  A++VF+++ + +V++W
Sbjct: 276 ISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITW 335

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           N++I              + + M++ GI P  +T +++ S  +        RS    ++ 
Sbjct: 336 NAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVN 395

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLAS 314
                  +     +VD+  + G +  A  +   +P+K D + W  L+     +    +  
Sbjct: 396 SVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGM 455

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            A EV   M        + G YV++   Y+  G
Sbjct: 456 RAAEVLMQMAP-----HDSGAYVALSNMYASSG 483



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 152/333 (45%), Gaps = 59/333 (17%)

Query: 240 VAQLNDCRNSRS---VHGFIMRRGWFMEDVIIGNAVVDMYAKLGI--INSACAVFEGLPV 294
           V Q+  C++ R    VH F+++ G    D  I   ++ + A      I  A +VF+ LP 
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQ-THDNAIATEILRLSATSDFRDIGYALSVFDQLPE 77

Query: 295 KDVISWNTLITGYAQ-NGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           ++  +WNT+I   A+      +A+ VF QM+ E   + PNQ T+ S+L A + +  L +G
Sbjct: 78  RNCFAWNTVIRALAETQDRHLDALLVFCQMLSEAT-VEPNQFTFPSVLKACAVMARLAEG 136

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY-------------------- 392
            ++H  ++K  L  D FV T L+ MY  CG ++DA  LFY                    
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 393 ---------------------------QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
                                      ++ + S V WN +IS +  +G   +A+  F +M
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 426 LDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           +  G V P+ +T VS+L A S  G++  G ++ H+  E+  I+        +VD++ + G
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEKNKIRIDDVLGSALVDMYAKCG 315

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +  A    + +P + +   W A++G   +HG 
Sbjct: 316 SIEKAIQVFERLP-QNNVITWNAVIGGLAMHGK 347


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 348/581 (59%), Gaps = 9/581 (1%)

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK---FGMMRHALR 185
           P ++ S LP C     +     I  + +K  L+ +L +   LIN   +      M +A +
Sbjct: 26  PSSLLSCLPKCTSLKELKQ---IQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQ 82

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F+ + + D+V +NS+   Y +SN P+ A   F       + PD  T  SL         
Sbjct: 83  LFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKA 142

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
            +  + +H   ++ G   E+  +   +++MYA    ++ A  VF+ +    V+S+N +IT
Sbjct: 143 FQQGKQLHCLAIKLG-LNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GYA++   +EA+ +F+ ++   ++ PN  T +S+L + + +GAL  G  IH  V KN L 
Sbjct: 202 GYARSSRPNEALSLFRQLQ-ARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLD 260

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             V V T L+DMY KCG +D A+S+F  +    +  W+A+I  + +HGQG   ++ F +M
Sbjct: 261 KYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEM 320

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485
               V+PD ITF+ LL ACSH+GLV EG RYF+ M E +GI P +KHYGCMVDL GRAG 
Sbjct: 321 ARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGL 380

Query: 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545
           L  A+ FI  +P++P   +W  LL +C  HGN+EL     +++ E+D  + G YV++SN+
Sbjct: 381 LHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNL 440

Query: 546 YANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNL 605
            A  GKWE VD +R L   +G  K PG SSIEV+N V  F++G+  H     ++  L  L
Sbjct: 441 CARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDEL 500

Query: 606 TAKMKSLGYVPDKSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
             ++KS+GYVPD S V+  D+E++EKE  L  HSE+LAI+FG++++PP + I++ KNLRV
Sbjct: 501 VKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRV 560

Query: 665 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CGDCH+  K IS + +REII+RD  RFHHFKDG CSCGDYW
Sbjct: 561 CGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 211/421 (50%), Gaps = 18/421 (4%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRDS 94
           L  C +L + K+I    +K   + D+ +   L++   +       + A +LF+ +P  D 
Sbjct: 33  LPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDI 92

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N+M  GY +S   ++A+ +  +     +  D  T  S+L  C  +     G  +H  
Sbjct: 93  VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCL 152

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            +K GL  N +V   LINMYA    +  A RVFD+++E  VVS+N+II  Y +S+ P  A
Sbjct: 153 AIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEA 212

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
              F  +Q   ++P+ +T++S+ S  A L      + +H ++ + G   + V +  A++D
Sbjct: 213 LSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNG-LDKYVKVNTALID 271

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MYAK G ++ A +VFE + V+D  +W+ +I  YA +G   + + +F+ M    ++ P++ 
Sbjct: 272 MYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARA-KVQPDEI 330

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSL 390
           T++ +L A SH G + +G +    + +    + +        C+VD+ G+ G + +A   
Sbjct: 331 TFLGLLYACSHTGLVDEGFRYFYSMSE---VYGIIPGIKHYGCMVDLLGRAGLLHEAYKF 387

Query: 391 FYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHITFVSLLTACSHS 447
             ++P + + + W  ++S    HG  + A     Q+  LD+    D++   +L   C+ +
Sbjct: 388 IDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNL---CARA 444

Query: 448 G 448
           G
Sbjct: 445 G 445



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 189/377 (50%), Gaps = 26/377 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           M   Y R     +A+  F +  L   L PD YTFP +LKAC   +    GK++HC  +KL
Sbjct: 98  MFRGYSRSNAPLKAISLFIK-ALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKL 156

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   + +V  +L++MY      + A+++FD++      S+NA+I+GY +S    EAL + 
Sbjct: 157 GLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLF 216

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +++   +  + +TV S+L  CA    +  G  IH Y+ K+GL+  + V+  LI+MYAK 
Sbjct: 217 RQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKC 276

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A+ VF+ M  RD  +W+++I AY            F  M +A +QPD +T + L 
Sbjct: 277 GSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGL- 335

Query: 238 SIVAQLNDCRNSRSV-HGFIMRRGWFMEDV---IIG----NAVVDMYAKLGIINSACAVF 289
                L  C ++  V  GF  R  + M +V   I G      +VD+  + G+++ A    
Sbjct: 336 -----LYACSHTGLVDEGF--RYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFI 388

Query: 290 EGLPVKDV-ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YS 344
           + LP+K   I W TL++  + +G    A +V   + E ++ +      +S L A    + 
Sbjct: 389 DELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWE 448

Query: 345 HVGALRQGIKIHARVIK 361
            V  LR+ + IH   +K
Sbjct: 449 DVDTLRK-LMIHKGAVK 464


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/677 (35%), Positives = 365/677 (53%), Gaps = 71/677 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN------------ 109
           D F+   LLH+Y +FG    A+ LFD M  RD  SWNA++S Y +SG+            
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 110 -------------------AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
                                E+L++   M+ EG      T+ SIL   A+  ++  G  
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  I+      N+F+ N L +MYAK G +  A  +FD + ++++VSWN +I+ Y ++  
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
           P    G    M+ +G  PD +T+                                    +
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTM------------------------------------S 260

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEI 329
            ++  Y + G ++ A  VF     KD++ W  ++ GYA+NG   +A+ +F +M+ E   I
Sbjct: 261 TIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE--HI 318

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S++ + + + +L  G  +H + I   L  ++ V++ L+DMY KCG IDDA S
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +P  + V WNA+I     +G    AL  F  ML +  +PD++TF+ +L+AC H   
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + +GQ YF  +  + G+ P L HY CMV+L GR G +  A   I+NM   PD  IW  LL
Sbjct: 439 IEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             C   G++    VA+  LFE+D      Y+++SN+YA++G+W+ V  VR+L + + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
             G+S IE++N+V  F + +RTHP+ E IY++L  L  K++  G+ P+ + VL DV EDE
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDE 618

Query: 630 KEHILTSHSERLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           K   +  HSE+LA+AFG+I  P   SPI+I KN+R+C DCH + KF S+I  R+II+RDS
Sbjct: 619 KFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDS 678

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHF  G CSC D W
Sbjct: 679 NRFHHFSTGKCSCNDNW 695



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 201/406 (49%), Gaps = 43/406 (10%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E+++ F +     G  P  YT   +L A   L D   GK+IH S++   F  +VF+  +L
Sbjct: 138 ESLELFKRMQ-REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNAL 196

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
             MY + G    AR LFD +  ++  SWN MISGY ++G   + + +L +MRL G   D 
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+++I+                                     Y + G +  A RVF +
Sbjct: 257 VTMSTIIAA-----------------------------------YCQCGRVDEARRVFSE 281

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
             E+D+V W +++  Y ++     A   F  M    I+PD  TL S+ S  A+L    + 
Sbjct: 282 FKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHG 341

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           ++VHG  +  G    ++++ +A++DMY+K G I+ A +VF  +P ++V+SWN +I G AQ
Sbjct: 342 QAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDV 368
           NG   +A+E+F+ M +  +  P+  T++ IL A  H   + QG +    +  ++ +   +
Sbjct: 401 NGHDKDALELFENMLQ-QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTL 459

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHG 413
               C+V++ G+ GRI+ A++L   +      + W+ ++S     G
Sbjct: 460 DHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + GR  +A+  F +  L   + PD YT   V+ +C  L     G+ +H   +  
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   ++ V+++L+ MY + G  + AR +F+ MP R+  SWNAMI G  Q+G+  +AL++ 
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
           + M  +    D +T   IL  C   + I  G      I  +HG+   L     ++N+  +
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGR 471

Query: 177 FGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITA 214
            G +  A+ +   M  + D + W+++++      D + A
Sbjct: 472 TGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/774 (33%), Positives = 399/774 (51%), Gaps = 131/774 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++ +Y   G   E +  FY   +  G+RPD + FP V KAC  L +   GK ++  +L +
Sbjct: 161 IMEMYCGLGDYEETIKLFY-LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 219

Query: 58  GFEWDVFVAASLLHMYCRFGLANVAR-------------------------------KLF 86
           GFE +  V  S+L M+ + G  ++AR                               K  
Sbjct: 220 GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCI 279

Query: 87  DDMPVR----DSGSWNAMISGYCQSG--------------------NAV----------- 111
            DM +     D  +WNA+ISGY QSG                    N V           
Sbjct: 280 SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 112 -----EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLF 165
                EAL +  +M LEGV  + IT+AS +  C     +  G  IH Y +K   L+ +L 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 166 VSNNLINMYAK----------FGMMRH---------------------ALRVFDQM---- 190
           V N+L++ YAK          FGM++                      A+ +  +M    
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG 459

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +E D+++WN ++  + Q  D   A  FF  M   G+ P+  T+    +   Q+ + +  +
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +HG+++R    +    +G+A++ MY+    +  AC+VF  L  +DV+ WN++I+  AQ+
Sbjct: 520 EIHGYVLRNHIEL-STGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G +  A+++ + M   N +  N  T VS LPA S + ALRQG +IH  +I+  L    F+
Sbjct: 579 GRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 637

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMYG+CG I  +  +F  +P+   V WN +IS +G+HG G  A+N F+     G+
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGL 697

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +P+HITF +LL+ACSHSGL+ EG +YF MM+ E+ + P ++ Y CMVDL  RAG      
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            FI+ MP  P+A++WG+LLGACRIH N +L   A+  LFE++ ++ G YVLM+NIY+  G
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +WE   ++R L ++RG+ K PG S IEV  K+  F  G+ +HP  E+I  +   L     
Sbjct: 818 RWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISGKDGKL----- 872

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 664
                        DV+EDEKE  L  HSE++A+AFG+IS+   +P++I KNLRV
Sbjct: 873 -------------DVDEDEKEFSLCGHSEKIALAFGLISTTXGTPLRIIKNLRV 913



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 216/474 (45%), Gaps = 52/474 (10%)

Query: 7   RCGRLSEAVDCFYQFTLTSGLRPD--FYTFPPVLKACRNLVD---GKKIHCSVLKLGFEW 61
           R G L+ A        LT+   PD     +  +L+ CR L +   G ++H  ++  G + 
Sbjct: 66  RNGVLNNAAMLLSSMDLTN---PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDV 122

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
             F+ + LL +YC+ G    AR++FD M  R+  SW A++  YC  G+  E + +   M 
Sbjct: 123 CEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMV 182

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EGV  D      +   C+   N   G  ++ Y++  G E N  V  ++++M+ K G M 
Sbjct: 183 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A R F+++  +DV  WN +++ Y    +   A    + M+ +G++PD +T         
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT--------- 293

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF-EGLPVKD---- 296
                              W        NA++  YA+ G    A   F E   +KD    
Sbjct: 294 -------------------W--------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW  LI G  QNG   EA+ VF+ M     + PN  T  S + A +++  LR G +IH
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 357 ARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
              IK   L  D+ V   LVD Y KC  ++ A   F  + ++  V WNA+++ + + G  
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           ++A+    +M  +G+ PD IT+  L+T  +  G       +F  M    G+ P+
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH-SMGMDPN 498


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/663 (37%), Positives = 367/663 (55%), Gaps = 40/663 (6%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYC----RFGLANVARKLFDDMPVRDSGSWNAMISG 103
           + IH  ++K G     +  + L+  +C     F     A  +F+ +   +   WN M  G
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIE-FCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 65

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           +  S + V AL +   M   G+  +  T   +L  CA+S     G  IH +++K G + +
Sbjct: 66  HALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLD 125

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS-------------------------- 197
           L+V  +LI+MY + G +  A +VFD+   RDVVS                          
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185

Query: 198 -----WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
                WN++I+ Y ++ +   A   F  M +  ++PD  T+V++ S  AQ       R V
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 245

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H +I   G F  ++ I NA++D+Y+K G + +AC +FEGLP KDVISWNTLI GY    L
Sbjct: 246 HSWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNL 304

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC--LCFDVFV 370
             EA+ +FQ M    E  PN  T +SILPA +H+GA+  G  IH  + K    +     +
Sbjct: 305 YKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL 363

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L+DMY KCG I+ A  +F  +   S   WNA+I    +HG+ D + + F +M   G+
Sbjct: 364 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGI 423

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
            PD ITFV LL+ACSHSG++  G+  F  M +++ + P L+HYGCM+DL G +G    A 
Sbjct: 424 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 483

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
             I  M + PD  IW +LL AC++HGN+ELG   +  L +++ EN G YVL+SNIYA  G
Sbjct: 484 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAG 543

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +W  V   R+L  D+G+KK PG SSIE+++ V  F  G++ HP+  +IY  L  +   ++
Sbjct: 544 RWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 603

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             G+VPD S VLQ++EE+ KE  L  HSE+LAIAFG+IS+ P + + I KNLRVC +CH 
Sbjct: 604 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHE 663

Query: 671 WTK 673
             K
Sbjct: 664 AYK 666



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 227/446 (50%), Gaps = 38/446 (8%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   ++ GL P+ YTFP +LK+C   +   +G++IH  VLKLG + D++V  SL+ MY 
Sbjct: 78  LYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 137

Query: 75  RFGLANVARKLFDD-------------------------------MPVRDSGSWNAMISG 103
           + G    A K+FD+                               +PV+D  SWNAMISG
Sbjct: 138 QNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISG 197

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           Y ++GN  EAL++  +M    V  D  T+ +++  CA+S +I  G  +H +I  HG   N
Sbjct: 198 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSN 257

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           L + N LI++Y+K G +  A  +F+ +  +DV+SWN++I  Y   N    A   F  M +
Sbjct: 258 LKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 317

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV-IIGNAVVDMYAKLGII 282
           +G  P+ +T++S+    A L      R +H +I +R   + +   +  +++DMYAK G I
Sbjct: 318 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDI 377

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
            +A  VF  +  K + SWN +I G+A +G A  + ++F  M + N I P+  T+V +L A
Sbjct: 378 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK-NGIEPDDITFVGLLSA 436

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            SH G L  G  I   + ++  +   +    C++D+ G  G   +A  +   +      V
Sbjct: 437 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 496

Query: 401 PWNAIISCHGIHGQGDKALNFFRQML 426
            W +++    +HG  +   +F + ++
Sbjct: 497 IWCSLLKACKMHGNVELGESFAQNLI 522



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 165/353 (46%), Gaps = 9/353 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS Y   G   EA++ F    + + +RPD  T   V+ AC    ++  G+++H  +   
Sbjct: 194 MISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDH 252

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  ++ +  +L+ +Y + G    A  LF+ +P +D  SWN +I GY       EAL + 
Sbjct: 253 GFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLF 312

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
            EM   G + + +T+ SILP CA    I  G  IH+YI K   G+     +  +LI+MYA
Sbjct: 313 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYA 372

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  A +VF+ ++ + + SWN++I  +        +   F+ M++ GI+PD +T V 
Sbjct: 373 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVG 432

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L S  +        R +   + +       +     ++D+    G+   A  +   + ++
Sbjct: 433 LLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 492

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            D + W +L+     +G         Q + +    NP  G+YV +   Y+  G
Sbjct: 493 PDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENP--GSYVLLSNIYATAG 543


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/609 (38%), Positives = 345/609 (56%), Gaps = 46/609 (7%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
            AS+L  C+ +        +H  +V+ GL+ +  V+  L   YA  G + H+L +  +  
Sbjct: 27  AASLLAACSTARRASE---LHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTK 83

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN--- 248
           +   + + S I A+      +      + M   G+ P   TL       A L  CR    
Sbjct: 84  DPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLS------ASLPACRGLSL 137

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMY-------------------------------A 277
            R++H +  +      D  +  A++ MY                               A
Sbjct: 138 GRALHAYAFKLA-LSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYA 196

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
            +G ++ A  +F+GLP KD I WN +I GY Q+G  +EA+++F+ M   +   P++ T V
Sbjct: 197 NMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLR-SSAEPDEVTVV 255

Query: 338 SILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
            +L A + +G +  G  +H+ V  + C+  +V VAT LVDMY KCG ++DA+++F+ +  
Sbjct: 256 LVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN 315

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V WNA+I+ + +HG   KAL  F Q+ D+G+ P  ITF+ LL ACSHSGLV EG+ +
Sbjct: 316 KDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSF 375

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           F  M+ E+GI P ++HYGCMVDL GRAG +  A + +Q++ + PDA +W +LL ACR+H 
Sbjct: 376 FQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHK 435

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           NM LG   +D L      N G Y+L+SNIYA VGKWE V  VRS+ +  G++K PG S+I
Sbjct: 436 NMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           E++ KV  F  G+ +HP  ++IY  L  + A +K  G+VP    VL D++E  KE  L  
Sbjct: 496 EIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAV 555

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSE+LA+AFG+ISS P S I+I KNLR C DCH   K IS+IT R+I+ RD NRFHHF D
Sbjct: 556 HSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVD 615

Query: 697 GICSCGDYW 705
           G C+CGDYW
Sbjct: 616 GSCTCGDYW 624



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 195/452 (43%), Gaps = 72/452 (15%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L AC       ++H +V++ G + D  VA  L   Y   G  + +  L        +  
Sbjct: 30  LLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIF 89

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           + + I  +   G  +  L +L +M  EG+     T+++ LP C     +  G  +H Y  
Sbjct: 90  YTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAF 146

Query: 157 KHGLEFNLFVSNNLINM-------------------------------YAKFGMMRHALR 185
           K  L  + +V+  L++M                               YA  G +  A R
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +FD +  +D + WN++I  Y Q   P  A   F  M ++  +PD +T+V + S VAQL  
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             + + +H ++        +V +  A+VDMY K G +  A AVF G+  KD++ WN +I 
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMIN 326

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365
           GYA +G + +A+E+F  + +   + P   T++ +L A SH G + +G +   + +++   
Sbjct: 327 GYAMHGDSRKALEMFVQLRD-QGLWPTDITFIGLLNACSHSGLVEEG-RSFFQSMEHEYG 384

Query: 366 FDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
            D  +    C+VD+ G+ G I++A  L   +                             
Sbjct: 385 IDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLT---------------------------- 416

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
                 + PD + +VSLL AC     ++ GQR
Sbjct: 417 ------ITPDAVMWVSLLAACRLHKNMALGQR 442



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 149/360 (41%), Gaps = 39/360 (10%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMY--------- 73
           L+ GL P  +T    L ACR L  G+ +H    KL    D +VA +LL MY         
Sbjct: 114 LSEGLLPTAHTLSASLPACRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAA 173

Query: 74  ----------------------CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
                                    G  + AR+LFD +P +D   WNAMI GY Q G   
Sbjct: 174 RALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPN 233

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNL 170
           EAL +   M       D +TV  +L   A+   + SG  +H Y+     ++ N+ V+  L
Sbjct: 234 EALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATAL 293

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY K G +  A+ VF  +  +D+V WN++I  Y    D   A   F  ++  G+ P  
Sbjct: 294 VDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTD 353

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T + L +  +        RS    +         +     +VD+  + G+I  A  + +
Sbjct: 354 ITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQ 413

Query: 291 GLPVK-DVISWNTLITG--YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            L +  D + W +L+      +N    + I  F +         N G Y+ +   Y+ VG
Sbjct: 414 SLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGL----ANSGMYILLSNIYAAVG 469



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 133/319 (41%), Gaps = 39/319 (12%)

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           LT     S++A  +  R +  +H  ++R+G    D  +   +   YA  G ++ +  +  
Sbjct: 22  LTADRAASLLAACSTARRASELHAAVVRKG-LDSDRAVAFRLQRAYAASGRLDHSLTLLG 80

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGAL 349
                  I + + I  ++  GL    + +   M+ E   + P   T  + LPA      L
Sbjct: 81  RTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSE--GLLPTAHTLSASLPA---CRGL 135

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDM-------------------------------Y 378
             G  +HA   K  L  D +VAT L+ M                               Y
Sbjct: 136 SLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCY 195

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
              G +DDA  LF  +PR   + WNA+I  +  HG+ ++AL  FR+ML     PD +T V
Sbjct: 196 ANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVV 255

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L+A +  G V  G+     ++    ++ +++    +VD++ + G L  A      +  
Sbjct: 256 LVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN 315

Query: 499 RPDASIWGALLGACRIHGN 517
           + D  +W A++    +HG+
Sbjct: 316 K-DIVVWNAMINGYAMHGD 333



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVL-K 56
           MI  Y + G+ +EA+  F +  L S   PD  T   VL A   L     GK +H  V   
Sbjct: 222 MIDGYTQHGKPNEALQLFRRM-LRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 280

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              + +V VA +L+ MYC+ G    A  +F  +  +D   WNAMI+GY   G++ +AL++
Sbjct: 281 RCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEM 340

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYA 175
             ++R +G+    IT   +L  C+ S  +  G      +  ++G++  +     ++++  
Sbjct: 341 FVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLG 400

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G++  A  +   + +  D V W S++AA
Sbjct: 401 RAGLIEEAFHLVQSLTITPDAVMWVSLLAA 430


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 395/705 (56%), Gaps = 38/705 (5%)

Query: 13  EAVDCFYQFTLTSGLRPDFY-----TFPPV-LKACRNLVDGKKIHCSVLKLGF-EWDVFV 65
           EA   F        + P+ Y     +FP   L     L  G+++H  V+  G  ++ V +
Sbjct: 292 EATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
              L++MY + G    AR++F  M  +DS SWN+MI+G  Q+   +EA++    MR   +
Sbjct: 352 GNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEI 411

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                T+ S +  CA       G  IH   +K G++ N+ VSN L+ +YA+ G +    +
Sbjct: 412 LPGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRK 471

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPI-TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +F  M E D VSWNSII A   S   +  A   F    +AG + + +T  S+ S V+ L+
Sbjct: 472 IFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLS 531

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTL 303
                + +HG  ++     ++    NA++  Y K G ++    +F  +   +D ++WN++
Sbjct: 532 FGELGKQIHGLALKYN-IADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSM 590

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I+GY  N L ++A+++   M +  +   +   Y ++L A++ V  L +G+++HA  ++ C
Sbjct: 591 ISGYIHNELLAKALDLVWFMMQTGQ-RLDSFMYATVLSAFASVATLERGMEVHACSVRAC 649

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           L  DV V + LVDMY KCGR+D A+  F  +P                         F  
Sbjct: 650 LESDVVVGSALVDMYSKCGRLDYALRFFNTMPL------------------------FAN 685

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
             LD    PDH+TFV +L+ACSH+GL+ EG ++F  M + +G+ P ++H+ CM DL GRA
Sbjct: 686 MKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRA 745

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NMELGAVASDRLFEVDSENVGYYVL 541
           G L    +FI+ MP++P+  IW  +LGA CR +G   ELG  A++ LF+++ EN   YVL
Sbjct: 746 GELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVL 805

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           + N+YA  G+WE + + R   +D  +KK  G+S + + + V +F  G+++HP  + IY +
Sbjct: 806 LGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKK 865

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS-PIQIFK 660
           L+ L  KM+  GYVP   F L D+E++ KE IL+ HSE+LA+AF + +    + PI+I K
Sbjct: 866 LKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMK 925

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCH+  K IS+I  R+II+RDSNRFHHF+DG CSC D+W
Sbjct: 926 NLRVCGDCHSAFKHISKIEGRQIILRDSNRFHHFQDGECSCSDFW 970



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 237/477 (49%), Gaps = 18/477 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            K  H  + K G E DV++  +L++ Y   G +  ARK+FD+MP+R+  SW  ++SGY +
Sbjct: 20  AKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYSR 79

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN--ILSGLLIHLYIVKHGLEFNL 164
           +G   EAL  L +M  EGV  +     S L  C   D+  IL G  IH  + K     + 
Sbjct: 80  NGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAVDA 139

Query: 165 FVSNNLINMYAKF-GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
            VSN LI+MY K  G + +ALR FD +  ++ VSWNSII+ Y Q+ D   A   F +MQ 
Sbjct: 140 VVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQC 199

Query: 224 AGIQPDLLTLVSLTSIVAQLN--DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
            G +P   T  SL +    L   D R    +   I + G F+ D+ +G+ +V  +AK G 
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSG-FLTDLFVGSGLVSAFAKSGS 258

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL- 340
           +  A  +F  +  ++ ++ N L+ G  +     EA ++F  M    +++P   +YV +L 
Sbjct: 259 LIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLS 316

Query: 341 --PAYS---HVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
             P YS    VG L++G ++H  VI   L  F V +   LV+MY KCG I DA  +F  +
Sbjct: 317 SFPEYSLAEEVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFM 375

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
               SV WN++I+    +    +A+  ++ M    + P   T +S +++C+       GQ
Sbjct: 376 TEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQ 435

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +  H    + GI  ++     ++ L+   G L        +MP     S W +++GA
Sbjct: 436 Q-IHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQVS-WNSIIGA 490



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 255/523 (48%), Gaps = 18/523 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL-----VDGKKIHCSVL 55
           ++S Y R G   EA+  F +  +  G+  + Y F   L+AC+ L     + G++IH  + 
Sbjct: 73  VVSGYSRNGEHKEAL-VFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQIHGLLF 131

Query: 56  KLGFEWDVFVAASLLHMYCRFGLA-NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           KL +  D  V+  L+ MY + G +   A + FDD+ V++S SWN++IS Y Q+G+   A 
Sbjct: 132 KLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAF 191

Query: 115 DILDEMRLEGVSMDPITVASILPV-CARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLIN 172
            +   M+ +G      T  S++   C+ ++  +  L  I   I K G   +LFV + L++
Sbjct: 192 KMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVS 251

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLL 231
            +AK G + HA ++F+QM  R+ V+ N ++    +      A   F  M     + P+  
Sbjct: 252 AFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESY 311

Query: 232 TLVSLTSI----VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            ++ L+S     +A+    +  R VHG ++  G     V IGN +V+MYAK G I  A  
Sbjct: 312 VIL-LSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARR 370

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF  +  KD +SWN++ITG  QN    EA+E +Q M   +EI P   T +S + + + + 
Sbjct: 371 VFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRR-HEILPGSFTLISSISSCASLK 429

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
             + G +IH   +K  +  +V V+  L+ +Y + G +++   +F  +P    V WN+II 
Sbjct: 430 WAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQVSWNSIIG 489

Query: 408 CHGIHGQG-DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
                 +   +A+  F   L  G + + ITF S+L+A S       G++  H +  ++ I
Sbjct: 490 ALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKYNI 548

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
                    ++  +G+ G +         M  R D   W +++
Sbjct: 549 ADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMI 591


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/549 (40%), Positives = 331/549 (60%), Gaps = 16/549 (2%)

Query: 168 NNLINMYAKFGMMRH---ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           N LI+  ++    RH   A  +FD+M +RD  +W+++++ Y +   P  A   +  MQ+ 
Sbjct: 98  NTLISALSR--SPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQE- 154

Query: 225 GIQP------DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME--DVIIGNAVVDMY 276
             +P      +  T  S  +  A     R  R +H  ++RRG      D ++ +A+ DMY
Sbjct: 155 --EPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMY 212

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
           AK G ++ A  VF+ +PV+D +SW  ++  Y   G   E   +F  M     + PN+ TY
Sbjct: 213 AKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTY 272

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
             +L A +       G ++H R+ K+      F  + L+ MY KCG +  A+ +F  + +
Sbjct: 273 AGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAK 332

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
              V W A+IS +  +GQ ++AL +F   L  G++PDH+TFV +L+AC+H+GLV +G   
Sbjct: 333 PDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEI 392

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           FH ++E++ I+    HY C++DL  R+G    A   I NM V+P+  +W +LLG CRIH 
Sbjct: 393 FHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHK 452

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
           N+ L   A++ LFE++ EN   YV ++NIYA+VG ++ V++VR +   +G+ K P  S I
Sbjct: 453 NVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512

Query: 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS 636
           EV  +V +F  G+++HPK ++IY  L+ L  KM   GYV D  FVL DVE+++KE  +  
Sbjct: 513 EVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGY 572

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSERLA+AFGII++P  SPI++FKNLR+CGDCH   K ISQI +R+IIVRDSNRFHHFKD
Sbjct: 573 HSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKD 632

Query: 697 GICSCGDYW 705
           GICSC DYW
Sbjct: 633 GICSCRDYW 641



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 189/397 (47%), Gaps = 24/397 (6%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG--------VSMDPITVA 133
           AR+LFD MP RD  +W+A++SGY + G    AL +   M+ E          +      A
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEF---NLFVSNNLINMYAKFGMMRHALRVFDQM 190
           +    C R     +G  +H ++V+ G++    +  + + L +MYAK G +  A RVFD+M
Sbjct: 174 AAAARCGR-----AGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRM 228

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
             RD VSW +++  Y            F  M +  G++P+  T   +    AQ       
Sbjct: 229 PVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFG 288

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           R VHG + + G   +     +A++ MY+K G + SA  VFE +   D++SW  +I+GYAQ
Sbjct: 289 RQVHGRMAKSG-TGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQ 347

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLCFDV 368
           NG   EA+  F M      I P+  T+V +L A +H G + +G++I H+   + C+    
Sbjct: 348 NGQPEEALRYFDMFLRSG-IKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTA 406

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
               C++D+  + G+ + A  +   +  + +   W +++    IH     A      + +
Sbjct: 407 DHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFE 466

Query: 428 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
             + P++  T+V+L    +  GL  E +    +M+ +
Sbjct: 467 --IEPENPATYVTLANIYASVGLFDEVEDVRRIMESK 501



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 149/310 (48%), Gaps = 15/310 (4%)

Query: 47  GKKIHCSVLKLGFEW---DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISG 103
           G+++HC V++ G +    D  + ++L  MY + G  + AR++FD MPVRD+ SW AM+  
Sbjct: 183 GRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVER 242

Query: 104 YCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           Y   G   E   + L  +R  GV  +  T A +L  CA+      G  +H  + K G   
Sbjct: 243 YFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGD 302

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           + F  + L+ MY+K G M  A+RVF+ M + D+VSW ++I+ Y Q+  P  A  +F    
Sbjct: 303 SCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFL 362

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           ++GI+PD +T V + S  A          +   I  +            V+D+ ++ G  
Sbjct: 363 RSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQF 422

Query: 283 NSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYV 337
             A  +   + VK +   W +L+ G   +   GLA  A E         EI P N  TYV
Sbjct: 423 ERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEAL------FEIEPENPATYV 476

Query: 338 SILPAYSHVG 347
           ++   Y+ VG
Sbjct: 477 TLANIYASVG 486



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y   GR  E    F     T G+RP+ +T+  VL+AC        G+++H  + K 
Sbjct: 239 MVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS 298

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G     F  ++LL MY + G    A ++F+ M   D  SW A+ISGY Q+G   EAL   
Sbjct: 299 GTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYF 358

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLI-HLYIVKHGLEFNLFVSNNLINMYAK 176
           D     G+  D +T   +L  CA +  +  GL I H    ++ +E        +I++ ++
Sbjct: 359 DMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSR 418

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSII 202
            G    A ++   M ++ +   W S++
Sbjct: 419 SGQFERAEKMIGNMAVKPNKFLWASLL 445


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/677 (35%), Positives = 365/677 (53%), Gaps = 71/677 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN------------ 109
           D F+   LLH+Y +FG    A+ LFD M  RD  SWNA++S Y +SG+            
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 110 -------------------AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
                                E+L++   M+ EG      T+ SIL   A+  ++  G  
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  I+      N+F+ N L +MYAK G +  A  +FD + ++++VSWN +I+ Y ++  
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
           P    G    M+ +G  PD +T+                                    +
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTM------------------------------------S 260

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEI 329
            ++  Y + G ++ A  VF     KD++ W  ++ GYA+NG   +A+ +F +M+ E   I
Sbjct: 261 TIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE--HI 318

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            P+  T  S++ + + + +L  G  +H + I   L  ++ V++ L+DMY KCG IDDA S
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +P  + V WNA+I     +G    AL  F  ML +  +PD++TF+ +L+AC H   
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + +GQ YF  +  + G+ P L HY CMV+L GR G +  A   I+NM   PD  IW  LL
Sbjct: 439 IEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             C   G++    VA+  LFE+D      Y+++SN+YA++G+W+ V  VR+L + + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
             G+S IE++N+V  F + +RTHP+ E IY++L  L  K++  G+ P+ + VL DV EDE
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDE 618

Query: 630 KEHILTSHSERLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           K   +  HSE+LA+AFG+I  P   SPI+I KN+R+C DCH + KF S+I  R+II+RDS
Sbjct: 619 KFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDS 678

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHF  G CSC D W
Sbjct: 679 NRFHHFSTGKCSCNDNW 695



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 202/406 (49%), Gaps = 43/406 (10%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASL 69
           E+++ F +     G  P  YT   +L A   L+D   GK+IH S++   F  +VF+  +L
Sbjct: 138 ESLELFKRMQ-REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNAL 196

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
             MY + G    AR LFD +  ++  SWN MISGY ++G   + + +L +MRL G   D 
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+++I+                                     Y + G +  A RVF +
Sbjct: 257 VTMSTIIAA-----------------------------------YCQCGRVDEARRVFSE 281

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
             E+D+V W +++  Y ++     A   F  M    I+PD  TL S+ S  A+L    + 
Sbjct: 282 FKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHG 341

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           ++VHG  +  G    ++++ +A++DMY+K G I+ A +VF  +P ++V+SWN +I G AQ
Sbjct: 342 QAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDV 368
           NG   +A+E+F+ M +  +  P+  T++ IL A  H   + QG +    +  ++ +   +
Sbjct: 401 NGHDKDALELFENMLQ-QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTL 459

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHG 413
               C+V++ G+ GRI+ A++L   +      + W+ ++S     G
Sbjct: 460 DHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + GR  +A+  F +  L   + PD YT   V+ +C  L     G+ +H   +  
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   ++ V+++L+ MY + G  + AR +F+ MP R+  SWNAMI G  Q+G+  +AL++ 
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
           + M  +    D +T   IL  C   + I  G      I  +HG+   L     ++N+  +
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGR 471

Query: 177 FGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITA 214
            G +  A+ +   M  + D + W+++++      D + A
Sbjct: 472 TGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510


>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
 gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
          Length = 1121

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 380/718 (52%), Gaps = 16/718 (2%)

Query: 1    MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
            MI+ Y   G   EA+       L  G++P+  TF   L AC +L DG+ +H  + + GF+
Sbjct: 407  MITAYAHRGCSKEALFLLDSLQL-QGVKPNCITFISSLGACSSLQDGRALHLLIHESGFD 465

Query: 61   WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
             +V VA +L+ MY + G    + KLF +M  +D  SWN+ I+ +   G + E + +LD+M
Sbjct: 466  QEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNSAIAAHSYHGRSDECIKLLDQM 525

Query: 121  RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            R EG   + +T  + L  C    ++  G+L+H  IV+ G E +  V++ +INMY + G +
Sbjct: 526  RGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGL 585

Query: 181  RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
              A  +F ++   DV+ W  ++  Y Q          F +M   G++P  +TLV+L + V
Sbjct: 586  DRAREIFTRVKTFDVILWTGMLTVYCQLGRTKQVMEHFRSMLHEGLKPTGVTLVNLITCV 645

Query: 241  AQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
            A   L   R+   +       G    + ++ N++++M+++   ++ A A+F+  P K V 
Sbjct: 646  ADSGLEHFRDGVWISSLAWESG-LESETMVANSLIEMFSEFRSLSQARAIFDRNPEKSVA 704

Query: 299  SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
               T++  Y +     EA            + P+  T V+ + A   +       ++H R
Sbjct: 705  LHTTMLAAYVKGERGKEAALTLFARMLLEGLEPSSVTLVTAMSACGGLADPSSSKRVHER 764

Query: 359  VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
              +  L  +  VA  LVDMYGK G +D A  +F +  R +   WNA+   +   G     
Sbjct: 765  ARELGLESETCVANGLVDMYGKAGDVDTARYIFDRALRRNVTTWNAMAGAYRQCGVTRGV 824

Query: 419  LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
            L   R M  +G RPD +TFVSLL+ C HSGL+ E +  F  M+ EFGI P  KHY C++D
Sbjct: 825  LWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAMRREFGIDPSPKHYSCVID 884

Query: 479  LFGRAGHLGMAHNFIQNMPVRPDAS--IWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
            L  RAG L  A +FI  + V   AS  +W ALLGACR  GN             +D E +
Sbjct: 885  LLARAGELQQAEDFIARISVSSPASSPMWMALLGACRSLGNSSS-RARRAARNAMDVEKM 943

Query: 537  ---------GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
                       +V ++NI A  G W+    +R    ++GL+K PG S I V N++  F  
Sbjct: 944  EPRSQHDPSAAHVALANICAASGNWDEALSIRKAMAEKGLRKEPGRSLIAVKNRLHEFVA 1003

Query: 588  GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            G+R HP+ E+IY ELR L   M   GYV D   V  +V E +K  +L  HSE+LA+AFG+
Sbjct: 1004 GDRDHPRREEIYAELRRLERAMVDRGYVVDTGMVTHNVGEADKRDLLGCHSEKLAVAFGV 1063

Query: 648  ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +S+PP S ++I KNLR CGDCH   K IS I  REI+VRDSNRFHHF++G CSCGDYW
Sbjct: 1064 LSTPPGSSLRIIKNLRACGDCHTAIKLISAIEGREIVVRDSNRFHHFRNGSCSCGDYW 1121



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 257/525 (48%), Gaps = 26/525 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++  Y   G  ++A++ F+Q  + +G+ PD   +  +LK C  L D   GK++H  + + 
Sbjct: 93  ILVAYFHAGLHAQALERFHQM-IKAGVEPDRLVYARLLKECGRLGDLAQGKRLHAQIRES 151

Query: 58  GFEWD-------VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           G   D        F+   L+ MY + G  + A++ FD +  ++  SW +++  Y  +G  
Sbjct: 152 GLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLH 211

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            +AL+   +M   GV  D +   + L VC     +  G  IH  I    L+ +L + N L
Sbjct: 212 AQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLEDGAGIHRQIQDKPLDSDLEIGNAL 271

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD- 229
           ++MY K G +  A  +FD +  R+V+SW  +++ + ++       G   +M   GI+PD 
Sbjct: 272 VSMYGKCGRLDLAKELFDCLERRNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDK 331

Query: 230 --LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
             LLTL+++ S    L++  +S   H +I+  G    + ++  A++ M+A+ G ++ A  
Sbjct: 332 VLLLTLLNVCSSRGVLDE--DSWMAHDYIV-GGGLDREAVVATALLSMFARCGRVDKARE 388

Query: 288 VFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           +FE +     + +  WN +IT YA  G + EA+ +   + +   + PN  T++S L A S
Sbjct: 389 IFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSL-QLQGVKPNCITFISSLGACS 447

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
              +L+ G  +H  + ++    +V VA  LV MYGKCG + D+  LF ++       WN+
Sbjct: 448 ---SLQDGRALHLLIHESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNS 504

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
            I+ H  HG+ D+ +    QM  EG   + +TF++ L +C+    + +G    H    + 
Sbjct: 505 AIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNSCTDPASLQDGV-LMHEKIVQC 563

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           G +        +++++GR G L  A      +    D  +W  +L
Sbjct: 564 GYEADTVVASAVINMYGRCGGLDRAREIFTRVKT-FDVILWTGML 607



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 246/514 (47%), Gaps = 28/514 (5%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD-------VFVAASLLHMYC 74
           SG+     ++  +LK C  L D   GK++H  + + G   D        F+   L+ MY 
Sbjct: 8   SGVDDACRSYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYG 67

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G  + A++ FD +  ++  SW +++  Y  +G   +AL+   +M   GV  D +  A 
Sbjct: 68  KCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVYAR 127

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFN-------LFVSNNLINMYAKFGMMRHALRVF 187
           +L  C R  ++  G  +H  I + GL  +        F+ N L+ MY K G    A R F
Sbjct: 128 LLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAF 187

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D +  +++ SW SI+ AY  +     A   F  M +AG++PD L  ++  ++   L    
Sbjct: 188 DSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLE 247

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
           +   +H  I  +     D+ IGNA+V MY K G ++ A  +F+ L  ++VISW  L++ +
Sbjct: 248 DGAGIHRQIQDKP-LDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRNVISWTILVSVF 306

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ-GIKIHARVIKNCLCF 366
           A+NG   E   + + M     I P++   +++L   S  G L +     H  ++   L  
Sbjct: 307 AENGRRRETWGLLRSM-AVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYIVGGGLDR 365

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGIHGQGDKALNFFR 423
           +  VAT L+ M+ +CGR+D A  +F +V   S+     WNA+I+ +   G   +AL    
Sbjct: 366 EAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLD 425

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
            +  +GV+P+ ITF+S L ACS    + +G R  H++  E G    +     +V ++G+ 
Sbjct: 426 SLQLQGVKPNCITFISSLGACSS---LQDG-RALHLLIHESGFDQEVSVANALVTMYGKC 481

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           G L  +      M  +  AS W + + A   HG 
Sbjct: 482 GSLLDSAKLFSEMAEKDLAS-WNSAIAAHSYHGR 514


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 347/561 (61%), Gaps = 10/561 (1%)

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  +H +++  GL+    V + ++  YA  G +  ++ VF+ +   D  ++  ++ +  +
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI--GDYFTFPFVLKSSVE 146

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                        + + G+Q DL    SL  +  +  +  ++  V   +  R     DV 
Sbjct: 147 LLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR-----DVS 201

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEEC 326
             NA++  Y K G I++A A+FE +P ++++SW T+I+GY+Q+GLA +A+ +F +M++E 
Sbjct: 202 SWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 261

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           + + PN  T +S+LPA + +  L +G +IH    +  L  +  V   L  MY KCG + D
Sbjct: 262 SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVD 321

Query: 387 AMSLFYQVPRSSS--VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           A + F ++ R+    + WN +I+ +  +G G +A++ FR+M+  G++PD ITF  LL+ C
Sbjct: 322 ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGC 381

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           SHSGLV  G +YF+ M   + I P ++HY C+ DL GRAG L  A   +  MP+    SI
Sbjct: 382 SHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSI 441

Query: 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564
           WG+LL ACR H N+E+   A+ +LF ++ EN G YVL+SN+YA  G+W+ VD++R++ + 
Sbjct: 442 WGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKS 501

Query: 565 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 624
           +G KK+PG S IE+N K  +F  G+ +HP+ ++IY  L  L  KMK+ GY PD S+VL D
Sbjct: 502 QGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHD 561

Query: 625 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 684
           + E+EKE  L +HSE+LA+AFGI+++P ++ +++ KNLR+CGDCH    FIS+I  RE+I
Sbjct: 562 ISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVI 621

Query: 685 VRDSNRFHHFKDGICSCGDYW 705
           VRD NRFHHFK G CSCGDYW
Sbjct: 622 VRDINRFHHFKGGCCSCGDYW 642



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 138/276 (50%), Gaps = 45/276 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ Y   G +  +V  F           D++TFP VLK+   L+    GK +H  +L++
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIG-------DYFTFPFVLKSSVELLSVWMGKCVHGLILRI 163

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA------------------ 99
           G ++D++VA SL+ +Y + G  N A K+FD+M +RD  SWNA                  
Sbjct: 164 GLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIF 223

Query: 100 -------------MISGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSDN 144
                        MISGY QSG A +AL + DEM  E  GV  + +T+ S+LP CA+   
Sbjct: 224 ERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLST 283

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSII 202
           +  G  IH    + GL  N  V   L  MYAK G +  A   FD++   E+++++WN++I
Sbjct: 284 LERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 343

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            AY      + A   F  M QAGIQPD +T   L S
Sbjct: 344 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 379



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 167/364 (45%), Gaps = 45/364 (12%)

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           M++ Y  SG+   ++ + + +       D  T   +L       ++  G  +H  I++ G
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIG------DYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 164

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF- 218
           L+F+L+V+ +LI +Y K G +  A +VFD M  RDV SWN+++A Y +S     A   F 
Sbjct: 165 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFE 224

Query: 219 ----------TTM----------QQA------------GIQPDLLTLVSLTSIVAQLNDC 246
                     TTM          QQA            G++P+ +T++S+    AQL+  
Sbjct: 225 RMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTL 284

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL--PVKDVISWNTLI 304
              R +H    R G    +  +  A+  MYAK G +  A   F+ L    K++I+WNT+I
Sbjct: 285 ERGRQIHELACRMG-LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 343

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-C 363
           T YA  G   +A+  F+ M +   I P+  T+  +L   SH G +  G+K    +     
Sbjct: 344 TAYASYGHGLQAVSTFREMIQAG-IQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYS 402

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFF 422
           +   V    C+ D+ G+ GR+ +A  L  ++P  +    W ++++    H   + A    
Sbjct: 403 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAA 462

Query: 423 RQML 426
           R++ 
Sbjct: 463 RKLF 466


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 352/586 (60%), Gaps = 7/586 (1%)

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           +D ++  G+  D  T + ++  C     +  G LI  ++  +G +  +F+ N LINMY K
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVK 60

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           F ++  A ++FDQM +R+V+SW ++I+AY +      A      M + G++P++ T    
Sbjct: 61  FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTY--- 117

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
           +S++   N   + R +H  I++ G    DV + +A++D++AKLG    A +VF+ +   D
Sbjct: 118 SSVLRACNGMSDVRMLHCGIIKEG-LESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGD 176

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            I WN++I G+AQN  +  A+E+F+ M+    I   Q T  S+L A + +  L  G++ H
Sbjct: 177 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAH 235

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             ++K     D+ +   LVDMY KCG ++DA  +F Q+     + W+ +IS    +G   
Sbjct: 236 VHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQ 293

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  F  M   G +P++IT V +L ACSH+GL+ +G  YF  M++ +GI P  +HYGCM
Sbjct: 294 EALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCM 353

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           +DL G+AG L  A   +  M   PDA  W  LLGACR+  NM L   A+ ++  +D E+ 
Sbjct: 354 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 413

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G Y ++SNIYAN  KW+ V+E+R   RD G+KK PG S IEVN ++  F  G+ +HP+  
Sbjct: 414 GTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIV 473

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           ++  +L  L  ++  +GYVP+ +FVLQD+E ++ E  L  HSE+LA+AFG+++ P +  I
Sbjct: 474 EVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVI 533

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +I KNLR+CGDCH + K  S++  R I++RD  R+HHF+DG CSCG
Sbjct: 534 RIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 209/389 (53%), Gaps = 14/389 (3%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           + GL  D  T+  ++K C   R + +G  I   +   G +  +F+   L++MY +F L N
Sbjct: 6   SHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLN 65

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            A +LFD MP R+  SW  MIS Y +     +AL++L  M  +GV  +  T +S+L  C 
Sbjct: 66  DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACN 125

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
              ++    ++H  I+K GLE +++V + LI+++AK G    AL VFD+M+  D + WNS
Sbjct: 126 GMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 182

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           II  + Q++    A   F  M++AG   +  TL S+      L         H  I++  
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK-- 240

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            + +D+I+ NA+VDMY K G +  A  VF  +  +DVI+W+T+I+G AQNG + EA+++F
Sbjct: 241 -YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 299

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMY 378
           ++M+      PN  T V +L A SH G L  G   + R +K     +       C++D+ 
Sbjct: 300 ELMKSSG-TKPNYITIVGVLFACSHAGLLEDGW-YYFRSMKKLYGINPGREHYGCMIDLL 357

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
           GK G++DDA+ L  ++     +V W  ++
Sbjct: 358 GKAGKLDDAVKLLNEMECEPDAVTWRTLL 386



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 168/316 (53%), Gaps = 26/316 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y +C    +A++      L  G+RP+ YT+  VL+AC  + D + +HC ++K G E
Sbjct: 85  MISAYSKCKIHQKALELLV-LMLRDGVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLE 143

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV+V ++L+ ++ + G    A  +FD+M   D+  WN++I G+ Q+  +  AL++   M
Sbjct: 144 SDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 203

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           +  G   +  T+ S+L  C     +  G+  H++IVK+  + +L ++N L++MY K G +
Sbjct: 204 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSL 261

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A RVF+QM ERDV++W+++I+   Q+     A   F  M+ +G +P+ +T      IV
Sbjct: 262 EDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYIT------IV 315

Query: 241 AQLNDCRNSRSVHGFIMRRGWF----MEDVIIGN-------AVVDMYAKLGIINSACAVF 289
             L  C      H  ++  GW+    M+ +   N        ++D+  K G ++ A  + 
Sbjct: 316 GVLFACS-----HAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLL 370

Query: 290 EGLPVK-DVISWNTLI 304
             +  + D ++W TL+
Sbjct: 371 NEMECEPDAVTWRTLL 386


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 359/647 (55%), Gaps = 37/647 (5%)

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           V +   +   +   CQ     EA+++L        +      ++++  C R   +  G  
Sbjct: 52  VSEDNKFEEAVDVLCQQKRVKEAVELLHRTDHRPSAR---VYSTLIAACVRHRALELGRR 108

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAK-------------------------------FGM 179
           +H +         +F+SN L++MYAK                                G 
Sbjct: 109 VHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGR 168

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTS 238
           +  A ++FD+M +RD  SWN+ I+ Y   N P  A   F  MQ+      +  TL S  +
Sbjct: 169 LEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALA 228

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A +   R  + +HG+++R    +++V+  +A++D+Y K G ++ A  +F+ +  +DV+
Sbjct: 229 ASAAIPCLRLGKEIHGYLIRTELNLDEVVW-SALLDLYGKCGSLDEARGIFDQMKDRDVV 287

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW T+I    ++G   E   +F+ + +   + PN+ T+  +L A +   A   G ++H  
Sbjct: 288 SWTTMIHRCFEDGRREEGFLLFRDLMQSG-VRPNEYTFAGVLNACADHAAEHLGKEVHGY 346

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           ++        F  + LV MY KCG    A  +F ++ +   V W ++I  +  +GQ D+A
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L+FF  +L  G +PD +T+V +L+AC+H+GLV +G  YFH ++E+ G+     HY C++D
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L  R+G    A N I NMPV+PD  +W +LLG CRIHGN+EL   A+  L+E++ EN   
Sbjct: 467 LLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPAT 526

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           Y+ ++NIYAN G W  V  VR    + G+ K PG S IE+  +V +F  G+ +HPK   I
Sbjct: 527 YITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDI 586

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           ++ L  L+ K+K  GYVPD +FVL DVEE++KE  L  HSE+LA+ FGIIS+PP +PI++
Sbjct: 587 HEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKV 646

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FKNLR C DCH   K+IS+I +R+I VRDSNRFH F+DG CSC DYW
Sbjct: 647 FKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 236/491 (48%), Gaps = 50/491 (10%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLG 58
           + V  +  R+ EAV+  ++    +  RP    +  ++ AC   R L  G+++H       
Sbjct: 62  VDVLCQQKRVKEAVELLHR----TDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASN 117

Query: 59  FEWDVFVAASLLHMYCR-------------------------------FGLANVARKLFD 87
           F   VF++  LL MY +                                G    ARKLFD
Sbjct: 118 FVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFD 177

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNIL 146
           +MP RD+ SWNA ISGY       EAL++   M R E  S +  T++S L   A    + 
Sbjct: 178 EMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLR 237

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  IH Y+++  L  +  V + L+++Y K G +  A  +FDQM +RDVVSW ++I  + 
Sbjct: 238 LGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMI--HR 295

Query: 207 QSNDPITAHGF--FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
              D     GF  F  + Q+G++P+  T   + +  A        + VHG++M  G+   
Sbjct: 296 CFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG 355

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
              I +A+V MY+K G    A  VF  +   D++SW +LI GYAQNG   EA+  F+++ 
Sbjct: 356 SFAI-SALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLL 414

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +     P+Q TYV +L A +H G + +G++  H+   K+ L        C++D+  + GR
Sbjct: 415 QSG-TKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGR 473

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLL 441
             +A ++   +P +     W +++    IHG  + A    + + +  + P++  T+++L 
Sbjct: 474 FKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYE--IEPENPATYITLA 531

Query: 442 TACSHSGLVSE 452
              +++GL SE
Sbjct: 532 NIYANAGLWSE 542



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 44/267 (16%)

Query: 292 LPVKDVIS----WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           L  KD++S    +   +    Q     EA+E+    +      P+   Y +++ A     
Sbjct: 46  LNPKDLVSEDNKFEEAVDVLCQQKRVKEAVELLHRTDH----RPSARVYSTLIAACVRHR 101

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-------------------------- 381
           AL  G ++HA    +     VF++  L+DMY KC                          
Sbjct: 102 ALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIV 161

Query: 382 -----GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHI 435
                GR++ A  LF ++P+  +  WNA IS +  H Q  +AL  FR M   E    +  
Sbjct: 162 GYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKF 221

Query: 436 TFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           T  S L A +    +  G+  + ++++ E  +   +  +  ++DL+G+ G L  A     
Sbjct: 222 TLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV--WSALLDLYGKCGSLDEARGIFD 279

Query: 495 NMPVRPDASIWGALLGACRIHGNMELG 521
            M  R D   W  ++  C   G  E G
Sbjct: 280 QMKDR-DVVSWTTMIHRCFEDGRREEG 305


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/696 (32%), Positives = 402/696 (57%), Gaps = 20/696 (2%)

Query: 26  GLRPDFYTFPPVLKAC--RNL-VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G R +   + P+L+ C  RNL  + + IH  ++K GF  D+FV   L+++Y + G+   A
Sbjct: 53  GTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 112

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            K+FD++P R+  +W  +++GY Q+ + + AL +  +M   G      T+  +L  C+  
Sbjct: 113 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 172

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I  G  +H Y++K+ ++F+  + N+L + Y+KF  +  A++ F  + E+DV+SW S+I
Sbjct: 173 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 232

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           ++   +     +  FF  M   G++P+  TL S+ S    +        +H   ++ G +
Sbjct: 233 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG-Y 291

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----------NG 311
              ++I N+++ +Y K G +  A  +FEG+   ++++WN +I G+A+           + 
Sbjct: 292 GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHK 351

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
             S A+ +FQ +     + P+  T+ S+L   S++ AL QG +IH ++IK+ +  DV V 
Sbjct: 352 SGSTALAMFQKLYRSG-MKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVG 410

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T LV MY KCG ID A   F ++P  + + W ++I+    HG   +AL  F  M   G++
Sbjct: 411 TALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIK 470

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TFV +L+ACSH+GL  E   YF +MQ+++ IKP + H+ C++D++ R G +  A +
Sbjct: 471 PNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFD 530

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            +  M   P+ +IW  L+  CR HG  +LG  A+++L ++  ++V  YV + N++ + G+
Sbjct: 531 VVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGR 590

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W+ V +VR L ++  + K   WS I +  KV  F   +++H +  ++Y  L  +  ++K+
Sbjct: 591 WKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKA 650

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTS---HSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           LGY P +  V    +E+ +E +L+S   HSE+LAIAFG+++ P  +PI++ K++ +C DC
Sbjct: 651 LGYEPIED-VEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDC 709

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           HN+ +FIS +  REI++RDS + H F +G CSCG Y
Sbjct: 710 HNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 745



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 247/482 (51%), Gaps = 26/482 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+      A+  F +  L +G  P  YT   VL AC +L     GK++H  ++K 
Sbjct: 130 LLTGYVQNSHPLLALQLFIKM-LEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKY 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             ++D  +  SL   Y +F     A K F  +  +D  SW ++IS  C +G A  +L   
Sbjct: 189 HIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFF 248

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  +G+  +  T+ S+L  C     +  G  IH   +K G   ++ + N+++ +Y K 
Sbjct: 249 MDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKC 308

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQ----SNDPITAH-------GFFTTMQQAGI 226
           G +  A ++F+ M   ++V+WN++IA + +    + D + AH         F  + ++G+
Sbjct: 309 GWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGM 368

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PDL T  S+ S+ + L        +HG I++ G  + DV++G A+V MY K G I+ A 
Sbjct: 369 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSG-VLADVVVGTALVSMYNKCGSIDKAS 427

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F  +P + +ISW ++ITG+A++GL+ +A+++F+ M     I PNQ T+V +L A SH 
Sbjct: 428 KAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG-IKPNQVTFVGVLSACSHA 486

Query: 347 GALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPW 402
           G   + +     + K        D F   CL+DMY + GR+++A  + +++    +   W
Sbjct: 487 GLADEALYYFELMQKQYNIKPVMDHF--ACLIDMYLRLGRVEEAFDVVHKMNFEPNETIW 544

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 461
           + +I+    HG+ D       Q+L   ++P  + T+VSLL     +G   +  +   +M+
Sbjct: 545 SMLIAGCRSHGKSDLGFYAAEQLLK--LKPKDVETYVSLLNMHISAGRWKDVSKVRKLMK 602

Query: 462 EE 463
           EE
Sbjct: 603 EE 604


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/696 (32%), Positives = 402/696 (57%), Gaps = 20/696 (2%)

Query: 26  GLRPDFYTFPPVLKAC--RNL-VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G R +   + P+L+ C  RNL  + + IH  ++K GF  D+FV   L+++Y + G+   A
Sbjct: 59  GTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 118

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            K+FD++P R+  +W  +++GY Q+ + + AL +  +M   G      T+  +L  C+  
Sbjct: 119 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 178

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I  G  +H Y++K+ ++F+  + N+L + Y+KF  +  A++ F  + E+DV+SW S+I
Sbjct: 179 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 238

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           ++   +     +  FF  M   G++P+  TL S+ S    +        +H   ++ G +
Sbjct: 239 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG-Y 297

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-----------NG 311
              ++I N+++ +Y K G +  A  +FEG+   ++++WN +I G+A+           + 
Sbjct: 298 GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHK 357

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
             S A+ +FQ +     + P+  T+ S+L   S++ AL QG +IH ++IK+ +  DV V 
Sbjct: 358 SGSTALAMFQKLYRSG-MKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVG 416

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T LV MY KCG ID A   F ++P  + + W ++I+    HG   +AL  F  M   G++
Sbjct: 417 TALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIK 476

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TFV +L+ACSH+GL  E   YF +MQ+++ IKP + H+ C++D++ R G +  A +
Sbjct: 477 PNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFD 536

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            +  M   P+ +IW  L+  CR HG  +LG  A+++L ++  ++V  YV + N++ + G+
Sbjct: 537 VVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGR 596

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W+ V +VR L ++  + K   WS I +  KV  F   +++H +  ++Y  L  +  ++K+
Sbjct: 597 WKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKA 656

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTS---HSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           LGY P +  V    +E+ +E +L+S   HSE+LAIAFG+++ P  +PI++ K++ +C DC
Sbjct: 657 LGYEPIED-VEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDC 715

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           HN+ +FIS +  REI++RDS + H F +G CSCG Y
Sbjct: 716 HNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 751



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 247/482 (51%), Gaps = 26/482 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+      A+  F +  L +G  P  YT   VL AC +L     GK++H  ++K 
Sbjct: 136 LLTGYVQNSHPLLALQLFIKM-LEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKY 194

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             ++D  +  SL   Y +F     A K F  +  +D  SW ++IS  C +G A  +L   
Sbjct: 195 HIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFF 254

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M  +G+  +  T+ S+L  C     +  G  IH   +K G   ++ + N+++ +Y K 
Sbjct: 255 MDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKC 314

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQ----SNDPITAH-------GFFTTMQQAGI 226
           G +  A ++F+ M   ++V+WN++IA + +    + D + AH         F  + ++G+
Sbjct: 315 GWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGM 374

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PDL T  S+ S+ + L        +HG I++ G  + DV++G A+V MY K G I+ A 
Sbjct: 375 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSG-VLADVVVGTALVSMYNKCGSIDKAS 433

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             F  +P + +ISW ++ITG+A++GL+ +A+++F+ M     I PNQ T+V +L A SH 
Sbjct: 434 KAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG-IKPNQVTFVGVLSACSHA 492

Query: 347 GALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPW 402
           G   + +     + K        D F   CL+DMY + GR+++A  + +++    +   W
Sbjct: 493 GLADEALYYFELMQKQYNIKPVMDHF--ACLIDMYLRLGRVEEAFDVVHKMNFEPNETIW 550

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 461
           + +I+    HG+ D       Q+L   ++P  + T+VSLL     +G   +  +   +M+
Sbjct: 551 SMLIAGCRSHGKSDLGFYAAEQLLK--LKPKDVETYVSLLNMHISAGRWKDVSKVRKLMK 608

Query: 462 EE 463
           EE
Sbjct: 609 EE 610


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/638 (38%), Positives = 365/638 (57%), Gaps = 19/638 (2%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y +  + + ARK FD MP R+  SW AM+ GY Q G   EA  +  +M  + V   
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSW 143

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  ++ V  R  +   GL   +  VK     ++    N+I+ Y + G +  A  +FD
Sbjct: 144 TVMLGGLIQV--RRIDEARGLF-DIMPVK-----DVVARTNMISGYCQEGRLAEARELFD 195

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M  R+V+SW ++I+ Y Q+     A   F  M +          VS T+++  +   + 
Sbjct: 196 EMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK-------NEVSWTAML--MGYTQG 246

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R      +     ++ V+  NA++  + + G +  A  VF+ +  KD  +W+ +I  Y 
Sbjct: 247 GRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYE 306

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + G   EA+ +F +M+    +  N  + +S+L   + + +L  G ++HA ++K+    DV
Sbjct: 307 RKGFEVEALNLFALMQR-EGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDV 365

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           FVA+ L+ MY KCG +  A  +F +      V WN+II+ +  HG  ++AL  F +M   
Sbjct: 366 FVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSS 425

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+  D +TFV +L+ACS++G V EG   F  M+ ++ ++P  +HY CMVDL GRAG +  
Sbjct: 426 GMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVND 485

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A + IQ MPV  DA IWGALLGACR H NM L  VA+ +L +++ +N G Y+L+SNIYA+
Sbjct: 486 AMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYAS 545

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT-HPKYEKIYDELRNLTA 607
            G+W  V E+R   R + + K+PG S IEV  +V +F  G  T HP+   I   L  L  
Sbjct: 546 KGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDG 605

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            ++  GY PD SFVL DV+E+EK   L  HSERLA+AFG++  P   PI++ KNLRVCGD
Sbjct: 606 MLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGD 665

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K I++IT REII+RD+NRFHHFKDG CSC DYW
Sbjct: 666 CHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 185/355 (52%), Gaps = 16/355 (4%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV    +++  YC+ G    AR+LFD+MP R+  SW  MISGY Q+G    A  + + M 
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM- 228

Query: 122 LEGVSMDPITVASILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
                 + ++  ++L    +   I  +  L     VK      +   N +I  + + G +
Sbjct: 229 ---PEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKA-----VVACNAMILGFGQNGEV 280

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A +VFDQ+ E+D  +W+++I  YE+    + A   F  MQ+ G+Q +  +L+S+ S+ 
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A L    + R VH  ++ +  F  DV + + ++ MY K G +  A  +F+    KD++ W
Sbjct: 341 ASLASLDHGRQVHAELV-KSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMW 399

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARV 359
           N++ITGYAQ+GL  EA++VF  M  C+      G T+V +L A S+ G +++G++I   +
Sbjct: 400 NSIITGYAQHGLVEEALQVFHEM--CSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESM 457

Query: 360 IKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
               L         C+VD+ G+ G ++DAM L  ++P  + ++ W A++     H
Sbjct: 458 KSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTH 512



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 200/456 (43%), Gaps = 67/456 (14%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           S +  Y R G    AR++FD+MP +   SWN+M++GY Q+    EA  + D+M       
Sbjct: 21  SQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP------ 74

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
                                            E N    N LI+ Y K  M+  A + F
Sbjct: 75  ---------------------------------ERNTVSWNGLISGYVKNRMVSEARKAF 101

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M ER+VVSW +++  Y Q      A   F  M +  +       VS T ++  L   R
Sbjct: 102 DTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV-------VSWTVMLGGLIQVR 154

Query: 248 NSRSVHGF--IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
                 G   IM     ++DV+    ++  Y + G +  A  +F+ +P ++VISW T+I+
Sbjct: 155 RIDEARGLFDIMP----VKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMIS 210

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCL 364
           GY QNG    A ++F++M E NE+     ++ ++L  Y+  G + +  ++  A  +K   
Sbjct: 211 GYVQNGQVDVARKLFEVMPEKNEV-----SWTAMLMGYTQGGRIEEASELFDAMPVKA-- 263

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
              V     ++  +G+ G +  A  +F Q+       W+A+I  +   G   +ALN F  
Sbjct: 264 ---VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFAL 320

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           M  EGV+ +  + +S+L+ C+    +  G Q +  +++ +F     +     ++ ++ + 
Sbjct: 321 MQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVA--SVLITMYVKC 378

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           G L  A         + D  +W +++     HG +E
Sbjct: 379 GDLVKARQIFDRFSPK-DIVMWNSIITGYAQHGLVE 413



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 67/346 (19%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N+ I  YA+ G +  A RVFD+M ++ +VSWNS++A Y Q+N P  A   F  M +    
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE---- 75

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                              RN+ S         W        N ++  Y K  +++ A  
Sbjct: 76  -------------------RNTVS---------W--------NGLISGYVKNRMVSEARK 99

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F+ +P ++V+SW  ++ GY Q GL SEA  +F  M E N           ++     +G
Sbjct: 100 AFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN-----------VVSWTVMLG 148

Query: 348 ALRQGIKI-HARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            L Q  +I  AR + + +   DV   T ++  Y + GR+ +A  LF ++PR + + W  +
Sbjct: 149 GLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTM 208

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           IS +  +GQ D A   F  M ++    + +++ ++L   +  G + E    F  M     
Sbjct: 209 ISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAM----- 259

Query: 466 IKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
             P      C  M+  FG+ G +  A      +  + D + W A++
Sbjct: 260 --PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGT-WSAMI 302



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 50/384 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK-KIHCSVLKLGF 59
           MIS Y + GRL+EA + F +       R +  ++  ++     + +G+  +   + ++  
Sbjct: 177 MISGYCQEGRLAEARELFDEMP-----RRNVISWTTMISG--YVQNGQVDVARKLFEVMP 229

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPV---------------------------- 91
           E +     ++L  Y + G    A +LFD MPV                            
Sbjct: 230 EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQ 289

Query: 92  ---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
              +D G+W+AMI  Y + G  VEAL++   M+ EGV  +  ++ S+L VCA   ++  G
Sbjct: 290 IREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHG 349

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             +H  +VK   + ++FV++ LI MY K G +  A ++FD+   +D+V WNSII  Y Q 
Sbjct: 350 RQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQH 409

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A   F  M  +G+  D +T V + S  +     +    +    M+  + +E    
Sbjct: 410 GLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFES-MKSKYLVEPKTE 468

Query: 269 GNA-VVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMM 323
             A +VD+  + G++N A  + + +PV+ D I W  L+     +    LA  A +    +
Sbjct: 469 HYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQL 528

Query: 324 EECNEINPNQGTYVSILPAYSHVG 347
           E       N G Y+ +   Y+  G
Sbjct: 529 EP-----KNAGPYILLSNIYASKG 547


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/683 (35%), Positives = 377/683 (55%), Gaps = 21/683 (3%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  G ++H ++ KLGF  D  +  +L+ MY + G  ++A ++F  M  R+  SW A++ 
Sbjct: 232 SLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMV 291

Query: 103 GYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           G+ Q G+A   L +L EMR     + +  T+++ L  C  ++++ +G+ IH   V+ G E
Sbjct: 292 GFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYE 351

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
            +  V+++L+ +Y+K G +  A RVFD   + R + +WN++I+ Y  +     A   F  
Sbjct: 352 EHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFRE 411

Query: 221 MQQAGI------QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVV 273
           M++         QPD  T  SL      L   R    VH  +   G+    + I+  A+V
Sbjct: 412 MRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALV 471

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMY K G +  A  VFE L  K+ I W T++ G+AQ G   EA+E+F+          + 
Sbjct: 472 DMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSG-ARADA 530

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
               SI+   +    + QG ++H   +K+    DV     +VDMY KCG  D+A  +F +
Sbjct: 531 HVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFRE 590

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +P  + V W  +I+  G HG G +A+  F +M   GV PD +T+++LL+ACSH+GLV E 
Sbjct: 591 IPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDEC 650

Query: 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 513
           +RYF  ++ +  ++P  +HY CMVDL GRAG L  A + I+ MP+ P   +W  LL ACR
Sbjct: 651 RRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACR 710

Query: 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 573
           +H ++ +G  A D L  +D +N   YV +SN++A  G W    +VR   R RGLKK  G 
Sbjct: 711 VHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGC 770

Query: 574 SSIEVNNKVDIFYTG--NRTHPKYEKIYDELRNLTAKMK-SLGYVPDK-SFVLQDVEEDE 629
           S +E+  +V  FY G     HP+   I   LR++  +++  LGY  D   F L DV+E+ 
Sbjct: 771 SWVEIGKEVHFFYGGGDEEAHPQAGDIRRVLRDVETRVREQLGYCADDVQFALHDVDEES 830

Query: 630 KEHILTSHSERLAIAFGIISS-------PPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
           +   L +HSERLA+   ++ +         + PI+++KNLRVCGDCH + K +S +  R 
Sbjct: 831 RAESLRAHSERLAVGLWLLRNGVDGGGGGHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRA 890

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           ++VRD+NRFH F+ G CSC DYW
Sbjct: 891 LVVRDANRFHRFEHGTCSCKDYW 913



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 203/424 (47%), Gaps = 16/424 (3%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L   A+  ++  G+ +H  + K G   +  + NNLI+MYAK G +  A  VF  M 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R+VVSW +++  + Q  D          M+ A    P+  TL +         D     
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE--GLPVKDVISWNTLITGYA 308
            +HG  +R G + E  ++ +++V +Y+K G I  A  VF+  GL  + + +WN +I+GYA
Sbjct: 340 GIHGLCVRTG-YEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLG-RGLATWNAMISGYA 397

Query: 309 QNGLASEAIEVFQMMEEC-----NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN- 362
             G   +A+ VF+ M        ++  P++ T+ S+L A   +GA R+G ++HA +  + 
Sbjct: 398 HAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASG 457

Query: 363 -CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
                +  +A  LVDMY KCGR+  AM +F ++ R +++ W  ++  H   GQ  +AL  
Sbjct: 458 FSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALEL 517

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           FR+    G R D     S++   +   LV +G R  H    +      +     +VD++ 
Sbjct: 518 FRRFWRSGARADAHVLSSIVGVLADFALVEQG-RQVHCYGVKSPAGTDVSAGNSIVDMYL 576

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG-NMELGAVASD-RLFEVDSENVGYY 539
           + G    A    + +P R   S W  ++     HG   E  A+  + R   V+ + V Y 
Sbjct: 577 KCGLPDEAERMFREIPARNVVS-WTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYL 635

Query: 540 VLMS 543
            L+S
Sbjct: 636 ALLS 639



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 169/370 (45%), Gaps = 19/370 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGL-----RPDFYTFPPVLKACRNL---VDGKKIHC 52
           MIS Y   G   +A+  F +            +PD +TF  +LKAC  L    +G ++H 
Sbjct: 392 MISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHA 451

Query: 53  SVLKLGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           ++   GF    +  +A +L+ MY + G   VA ++F+ +  +++  W  ++ G+ Q G  
Sbjct: 452 AMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQV 511

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           +EAL++       G   D   ++SI+ V A    +  G  +H Y VK     ++   N++
Sbjct: 512 MEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSI 571

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MY K G+   A R+F ++  R+VVSW ++I    +      A   F  M+  G++PD 
Sbjct: 572 VDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDE 631

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T ++L S  +        R     I R             +VD+  + G +  A  +  
Sbjct: 632 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIR 691

Query: 291 GLPVKDVIS-WNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            +P++  +  W TL++    +    +  EA +V   ++  N +N     YV++   ++  
Sbjct: 692 TMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVN-----YVTLSNVFAEA 746

Query: 347 GALRQGIKIH 356
           GA R+  K+ 
Sbjct: 747 GAWRECHKVR 756


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 347/625 (55%), Gaps = 81/625 (12%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A +LFD++P  D+ S+N M+S Y ++ N  +A    D M        P   A+       
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRM--------PFKDAASW----- 158

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
                                     N +I  YA+ G M  A  +F  MME++ VSWN++
Sbjct: 159 --------------------------NTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+ Y +  D   A  FF      G                                    
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRG------------------------------------ 216

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVF 320
               V+   A++  Y K   +  A A+F+ + V K++++WN +I+GY +N    + +++F
Sbjct: 217 ----VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLF 272

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380
           + M E   I PN     S L   S + AL+ G +IH  V K+ LC DV   T L+ MY K
Sbjct: 273 RAMLE-EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCK 331

Query: 381 CGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           CG + DA  LF  + +   V WNA+IS +  HG  DKAL  FR+M+D  +RPD ITFV++
Sbjct: 332 CGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAV 391

Query: 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           L AC+H+GLV+ G  YF  M  ++ ++P   HY CMVDL GRAG L  A   I++MP RP
Sbjct: 392 LLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRP 451

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 560
            A+++G LLGACR+H N+EL   A+++L +++S+N   YV ++NIYA+  +WE V  VR 
Sbjct: 452 HAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRK 511

Query: 561 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF 620
             ++  + K PG+S IE+ NKV  F + +R HP+ + I+ +L+ L  KMK  GY P+  F
Sbjct: 512 RMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEF 571

Query: 621 VLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITE 680
            L +VEE++KE +L  HSE+LA+AFG I  P  S IQ+FKNLR+CGDCH   KFIS+I +
Sbjct: 572 ALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEK 631

Query: 681 REIIVRDSNRFHHFKDGICSCGDYW 705
           REIIVRD+ RFHHFKDG CSCGDYW
Sbjct: 632 REIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 174/342 (50%), Gaps = 20/342 (5%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E D F    +L  Y R      A+  FD MP +D+ SWN MI+GY + G   +A ++   
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHL-YIVKHGLEFNLFVSNNLINMYAKFG 178
           M    +  + ++  +++     S  I  G L    +  K      +     +I  Y K  
Sbjct: 181 M----MEKNEVSWNAMI-----SGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAK 231

Query: 179 MMRHALRVF-DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            +  A  +F D  + +++V+WN++I+ Y +++ P      F  M + GI+P+   L S  
Sbjct: 232 KVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSAL 291

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              ++L+  +  R +H  I+ +     DV    +++ MY K G +  A  +FE +  KDV
Sbjct: 292 LGCSELSALQLGRQIHQ-IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN +I+GYAQ+G A +A+ +F+ M + N+I P+  T+V++L A +H G +  G+    
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMID-NKIRPDWITFVAVLLACNHAGLVNIGMAYFE 409

Query: 358 RVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP 395
            ++++   + V       TC+VD+ G+ G++++A+ L   +P
Sbjct: 410 SMVRD---YKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMP 448



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y R G + +A + FY     S +  +  ++  ++       D +K      K+   
Sbjct: 161 MITGYARRGEMEKARELFY-----SMMEKNEVSWNAMISGYIECGDLEKA-SHFFKVAPV 214

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAMISGYCQSGNAVEALDILDE 119
             V    +++  Y +     +A  +F DM V ++  +WNAMISGY ++    + L +   
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M  EG+  +   ++S L  C+    +  G  IH  + K  L  ++    +LI+MY K G 
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           +  A ++F+ M ++DVV+WN++I+ Y Q  +   A   F  M    I+PD +T V++
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAV 391



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 5/194 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS YV   R  + +  F +  L  G+RP+       L  C  L     G++IH  V K 
Sbjct: 255 MISGYVENSRPEDGLKLF-RAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS 313

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DV    SL+ MYC+ G    A KLF+ M  +D  +WNAMISGY Q GNA +AL + 
Sbjct: 314 TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLF 373

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
            EM    +  D IT  ++L  C  +  +  G+     +V+ + +E        ++++  +
Sbjct: 374 REMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGR 433

Query: 177 FGMMRHALRVFDQM 190
            G +  AL++   M
Sbjct: 434 AGKLEEALKLIRSM 447



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 65/309 (21%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N ++    + G I+ A  VF G+  K+ I+WN+L+ G +++   S  +E  Q+ +E  E 
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKD--PSRMMEAHQLFDEIPE- 121

Query: 330 NPNQGTYVSILPAYSH--------------------------VGALRQGIKIHARVI--- 360
            P+  +Y  +L  Y                             G  R+G    AR +   
Sbjct: 122 -PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180

Query: 361 ---KNCLCFDVFVA--------------------------TCLVDMYGKCGRIDDAMSLF 391
              KN + ++  ++                          T ++  Y K  +++ A ++F
Sbjct: 181 MMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMF 240

Query: 392 YQVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
             +  + + V WNA+IS +  + + +  L  FR ML+EG+RP+     S L  CS    +
Sbjct: 241 KDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSAL 300

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             G R  H +  +  +   +     ++ ++ + G LG A    + M  + D   W A++ 
Sbjct: 301 QLG-RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMIS 358

Query: 511 ACRIHGNME 519
               HGN +
Sbjct: 359 GYAQHGNAD 367



 Score = 39.3 bits (90), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS Y + G   +A+ C ++  + + +RPD+ TF  VL AC         H  ++ +G  
Sbjct: 356 MISGYAQHGNADKAL-CLFREMIDNKIRPDWITFVAVLLACN--------HAGLVNIGMA 406

Query: 61  W------DVFVAASLLHMYC------RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +      D  V     H  C      R G    A KL   MP R   +    + G C+  
Sbjct: 407 YFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVH 466

Query: 109 NAVEALDILDEMRLE 123
             VE  +   E  L+
Sbjct: 467 KNVELAEFAAEKLLQ 481


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 369/645 (57%), Gaps = 38/645 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D F   ++L +Y + GL    R +FD+MP RDS S+N +ISG+  +G    AL +   M+
Sbjct: 88  DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            EG+     T  S+L  C +  ++  G  IH  I+   L  N+FV N L ++YA+ G + 
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID 207

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A R+FD+M+ R+VV+WN +I+ Y ++  P      F  MQ + ++PD +T         
Sbjct: 208 QARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVT--------- 258

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
                                       ++V+  Y + G I+ A  VF  +  KD + W 
Sbjct: 259 ---------------------------ASSVLGAYIQAGYIDEARKVFGEIREKDEVCWT 291

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            +I G AQNG   +A+ +F  M   N   P+  T  S++ + + + +L  G  +H +   
Sbjct: 292 IMIVGCAQNGKEEDALLLFSEMLLENA-RPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
             +  D+ V++ LVDMY KCG   DA ++F  +   + V WN++I  + ++GQ  +AL+ 
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSL 410

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           +  ML+E ++PD +TFV +L+AC H+GLV EG+ YF  M ++ G++P   HY CMV+LFG
Sbjct: 411 YENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFG 470

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           R+GH+  A + I +M   P++ IW  +L  C + G+++ G +A+  L E++  N   Y++
Sbjct: 471 RSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIM 530

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN+YA  G+W+ V  +RSL + + +KK   +S IE++N+V  F   +RTHP  + I+ +
Sbjct: 531 LSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQ 590

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK-SPIQIFK 660
           L  L  K++  G+ P+ + VL D  EDEK   +  HSE+LA+A+G+I  P   +PI+I K
Sbjct: 591 LNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIK 650

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           N+R C DCH + KF+S IT R +I+RDSNRFHHF +G CSC DYW
Sbjct: 651 NIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 202/412 (49%), Gaps = 43/412 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS +   GR   A+  F +     GL+P  YT   VL AC  L+D   GK+IH  ++  
Sbjct: 126 VISGFAGNGRGGPALGVFLRMQ-KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIIC 184

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               +VFV  +L  +Y R G  + AR+LFD M +R+  +WN MISGY ++    + +D+ 
Sbjct: 185 NLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLF 244

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM++  +  D +T +S+L                                     Y + 
Sbjct: 245 HEMQVSNLKPDQVTASSVL-----------------------------------GAYIQA 269

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A +VF ++ E+D V W  +I    Q+     A   F+ M     +PD  T+ S+ 
Sbjct: 270 GYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVV 329

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A+L    + + VHG     G   +D+++ +A+VDMY K G+   A  +F  +  ++V
Sbjct: 330 SSCAKLASLYHGQVVHGKAFLMG-VNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNV 388

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++I GYA NG   EA+ +++ M E N + P+  T+V +L A  H G + +G +   
Sbjct: 389 VSWNSMIGGYALNGQDLEALSLYENMLEEN-LKPDSVTFVGVLSACVHAGLVEEGKEYFC 447

Query: 358 RVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIIS 407
            +  ++ L        C+V+++G+ G +D A+ L   + +  +S+ W  ++S
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/675 (37%), Positives = 374/675 (55%), Gaps = 48/675 (7%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRD 93
           +L  C++L   K+IH +VLKLG E D F+A  LLH +C   L++    A +LF   P  D
Sbjct: 11  LLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLH-HCAISLSDSLDYACRLFRYTPNPD 69

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIH 152
               N +I G  +S    ++L    EMR    S  D  + A I+   A   ++  G+ +H
Sbjct: 70  VFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLH 129

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              + HGL+ +LFV   LI+MY + G +  A +VFD+M E + ++WN+++ A  +  D  
Sbjct: 130 CQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMK 189

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                F          DL+ + +L S                      W        N +
Sbjct: 190 GGRELF----------DLMPVRNLMS----------------------W--------NVM 209

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +  Y K G +  A  +F  +P+KD +SW+T+I G+A NG   EA   F+ ++    + PN
Sbjct: 210 LAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQR-KGMRPN 268

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + +   +L A +  GAL  G  +H  + K+ L + V V   L+D Y KCG +  A  +F 
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328

Query: 393 QVPRSSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
           ++    + V W ++++   +HG G++A+  F +M + G+RPD I F+SLL ACSH+GLV 
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G  YF  M+  + I+P ++HYGCMVDL+GRAG L  A+ F+  MP+   A IW  LLGA
Sbjct: 389 QGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGA 448

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C +HG+++L     +RL E+D  N   +VL+SN YA  GKW+    VR    ++ + KTP
Sbjct: 449 CSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTP 508

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEK 630
           GWS IEV+  +  F  G + +   E+ Y +L+ +  +++   GYVP+   VL D+EE+EK
Sbjct: 509 GWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEK 568

Query: 631 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           E  ++ HSE+LA+AFGI        I+I KNLR+C DCH   K ISQI + EI+VRD +R
Sbjct: 569 EGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSR 628

Query: 691 FHHFKDGICSCGDYW 705
           FH FKDG CSC DYW
Sbjct: 629 FHSFKDGYCSCRDYW 643



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 199/418 (47%), Gaps = 55/418 (13%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD ++F  ++KA  NL     G ++HC  L  G +  +FV  +L+ MY   G    ARK+
Sbjct: 104 PDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKV 163

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+MP  ++ +WNAM++  C+ G+     ++ D                ++PV       
Sbjct: 164 FDEMPEPNAIAWNAMVTACCRGGDMKGGRELFD----------------LMPV------- 200

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
                            NL   N ++  Y K G +  A  +F +M  +D VSW+++I  +
Sbjct: 201 ----------------RNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGF 244

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFM 263
             +     A  FF  +Q+ G++P+  +L  + S  AQ       + +HGFI + G  W  
Sbjct: 245 AHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWI- 303

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEG-LPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             V + NA++D Y+K G +  A  VFE  +  ++++SW +++   A +G   EAI +F  
Sbjct: 304 --VSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHK 361

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGK 380
           MEE   I P++  ++S+L A SH G + QG +   + +K     +  +    C+VD+YG+
Sbjct: 362 MEESG-IRPDEIAFISLLYACSHAGLVEQGCEYFDK-MKGMYNIEPSIEHYGCMVDLYGR 419

Query: 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHI 435
            G++  A     Q+P   +++ W  ++    +HG    A     ++  LD     DH+
Sbjct: 420 AGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHV 477



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 182/368 (49%), Gaps = 32/368 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKI-HCSVLK 56
           +IS+Y  CG +  A   F +        P+   +  ++ AC    ++  G+++     ++
Sbjct: 147 LISMYGECGFVGFARKVFDEMP-----EPNAIAWNAMVTACCRGGDMKGGRELFDLMPVR 201

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W+V +A      Y + G   +AR++F +MP++D  SW+ MI G+  +G   EA   
Sbjct: 202 NLMSWNVMLAG-----YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSF 256

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             E++ +G+  +  ++  +L  CA++  +  G ++H +I K GL + + V+N L++ Y+K
Sbjct: 257 FRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSK 316

Query: 177 FGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            G +  A  VF+++M ER++VSW S++AA         A G F  M+++GI+PD +  +S
Sbjct: 317 CGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFIS 376

Query: 236 LTSIVAQLNDCRNSRSVHG----FIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVF 289
           L      L  C ++  V      F   +G +  +  I +   +VD+Y + G +  A    
Sbjct: 377 L------LYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFV 430

Query: 290 EGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVG 347
             +P+    I W TL+   + +G    A    Q+ E  +E++PN  + +V +  AY+  G
Sbjct: 431 CQMPIPCTAIIWRTLLGACSMHGDVKLAE---QVKERLSELDPNNSSDHVLLSNAYAVAG 487

Query: 348 ALRQGIKI 355
             +    +
Sbjct: 488 KWKDAASV 495


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/534 (41%), Positives = 330/534 (61%), Gaps = 57/534 (10%)

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++PD+++LV++    A +    + ++VHG  +R G F ED+ +GNA+VDMYAK G+++ A
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSF-EDLFVGNALVDMYAKCGMVDEA 67

Query: 286 CAVFEGLPVKDVISWNTLITGY-----------------------------------AQN 310
             VF+ +  KDV+SWN ++ GY                                   AQ 
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 311 GLASEAIEVFQMME--ECNE--------------INPNQGTYVSILPAYSHVGALRQGIK 354
           GL  E ++VF+ M+  E N+              + PN  T    L A + + ALR G +
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 355 IHARVIKNCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           IHA +++N   FD   ++VA CL+DMY K G ID A  +F  + + + V W ++++ +G+
Sbjct: 188 IHAYILRNH--FDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGM 245

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG+G +AL  F +M   G++PD +T + +L ACSHSG++ +G  +F+ M +EFG+ P  +
Sbjct: 246 HGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQE 305

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CMVDL GRAG L  A   I+ M + P + +W ALL  CRIH N+ELG  A+ +L E+
Sbjct: 306 HYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLEL 365

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           +SEN G Y L+SNIYAN  +W+ V  VRSL ++ G++K PG S ++       FY  ++T
Sbjct: 366 NSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKT 425

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP+ ++IY+ LR+LT ++K LGYVP+ SF L DV+++EK  +L  HSE+LA+A+GI+ S 
Sbjct: 426 HPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISA 485

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P +PI+I KNLRVCGDCHN   +IS I + EII+RDS+RFHHFK G CSC  YW
Sbjct: 486 PGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 177/386 (45%), Gaps = 79/386 (20%)

Query: 27  LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           +RPD  +   VL AC ++   + GK +H   ++ G   D+FV  +L+ MY + G+ + A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI------------- 130
           K+FD +  +D  SWNAM++GY Q G   +AL + ++MR E + ++ +             
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 131 ---------------------------------------TVASILPVCARSDNILSGLLI 151
                                                  T++  L  CAR   +  G  I
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 152 HLYIVKHGLEFN-LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           H YI+++  +   L+V+N LI+MYAK G +  A  VFD + +++ VSW S++  Y     
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 211 PITAHGFFTTMQQAGIQPDLLTLV------SLTSIVAQLNDCRNSRSVH-GFIMRRGWFM 263
              A   F  M++ G+QPD +TL+      S + ++ Q  +  NS S   G I  +  + 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEV 319
                   +VD+  + G +N A  + EG+ ++   I W  L++G   +A   L   A + 
Sbjct: 309 -------CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAK- 360

Query: 320 FQMMEECNEINPNQGTYVSILPAYSH 345
            Q++E  +E   N G+Y  +   Y++
Sbjct: 361 -QLLELNSE---NDGSYTLLSNIYAN 382



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 13/206 (6%)

Query: 9   GRLSEAVDCF-YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWD-V 63
           G  ++A++ F + F     ++P+ +T    L AC  L     G++IH  +L+  F+   +
Sbjct: 143 GEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFL 202

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           +VA  L+ MY + G  +VAR +FD++  ++  SW ++++GY   G   EAL++ DEMR  
Sbjct: 203 YVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRV 262

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN----LINMYAKFGM 179
           G+  D +T+  +L  C+ S  I  G+     + K   EF +         ++++  + G 
Sbjct: 263 GLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK---EFGVIPGQEHYACMVDLLGRAGR 319

Query: 180 MRHALRVFDQM-MERDVVSWNSIIAA 204
           +  A+ + + M ME   + W ++++ 
Sbjct: 320 LNEAMELIEGMQMEPSSIVWVALLSG 345



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 75/134 (55%)

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
           ++ P+  + V++LPA + +GA   G  +H   +++    D+FV   LVDMY KCG +D+A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F ++     V WNA+++ +   G+ + AL  F +M +E +  + +++ +++ A +  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 448 GLVSEGQRYFHMMQ 461
           GL  E    F  MQ
Sbjct: 128 GLGCETLDVFREMQ 141


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 325/543 (59%), Gaps = 2/543 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N L   Y K G +  A ++FD+M ER+V +WN+++A          + GFF  M+
Sbjct: 106 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 165

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G+ PD   L S+    A L D    R VH +++R G    D+ +G+++  MY + G +
Sbjct: 166 REGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCL 224

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
               AV   LP   ++S NT+I G  QNG +  A+E F MM     +  +  T+VS + +
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISS 283

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S + AL QG +IH +V+K  +   V V TCLV MY +CG + D+  +F+    S +   
Sbjct: 284 CSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLL 343

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +A+IS +G HG G KA+  F+QM++ G  P  +TF++LL ACSHSGL  EG   F +M +
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            +G++P +KHY C+VDL GR+G L  A   I +MP+ PD  IW  LL AC+   N ++  
Sbjct: 404 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 463

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             + R+ E+D  +   YVL+SNI A   +W  V EVR   RD  ++K PG S +E+   +
Sbjct: 464 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 523

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F TG+ +HP+ ++I + L  + AK++  GY PD S VL D+E++EKE  L+ HSE+LA
Sbjct: 524 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 583

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAF  +S P   PI++ KNLRVC DCH   K +SQ+T REI+VRD +RFHHFKDG CSC 
Sbjct: 584 IAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCR 643

Query: 703 DYW 705
           DYW
Sbjct: 644 DYW 646



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 208/418 (49%), Gaps = 17/418 (4%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG-FEWDVFVAASLLHMY 73
            + F  TSG   D +T   ++ A  +L D    +++   + +     W++         Y
Sbjct: 63  LHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGG-----Y 117

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
            + G    ARKLFD+MP R+  +WNAM++G    G   E+L    +MR EG+  D   + 
Sbjct: 118 IKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLG 177

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+   CA   ++++G  +H Y+V+ GL+ ++ V ++L +MY + G ++    V   +   
Sbjct: 178 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 237

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
            +VS N+IIA   Q+ D   A  +F  M+  G+  D++T VS  S  + L      + +H
Sbjct: 238 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 297

Query: 254 GFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           G +M+ G  ++ V+ +   +V MY++ G +  +  VF G    D    + +I+ Y  +G 
Sbjct: 298 GQVMKAG--VDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 355

Query: 313 ASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFV 370
             +AIE+F QMM    E  P+  T++++L A SH G   +G+     + K   +   V  
Sbjct: 356 GQKAIELFKQMMNGGAE--PSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 413

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            TC+VD+ G+ G +D+A +L   +P +   V W  ++S        D A    +++++
Sbjct: 414 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE 471



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           ALR   ++HA    +    D F A  L+  Y   G +  A  LF ++PR + + WN +  
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 115

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
             G    GD  L   R++ DE    +  T+ +++   ++ G   E   +F  M+ E G+ 
Sbjct: 116 --GYIKNGD--LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-GMH 170

Query: 468 P 468
           P
Sbjct: 171 P 171


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/507 (43%), Positives = 317/507 (62%), Gaps = 2/507 (0%)

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           NS+I  Y  SN  + +   +T M + GI PD  T  ++   VAQL      +++H  I++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G F  +V +  A+V+MY     ++ A  VF+ +P ++++SWN LITGY  N +  + I+
Sbjct: 171 MG-FESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
           VF+ M+      P + T V +L A +H+GAL QG  I   +  N L  +VFV T L+DMY
Sbjct: 230 VFREMQIAGA-KPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMY 288

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG +D+A  +F  +   +   WN +IS + ++G+G+ AL  F +M+ E  +PD +TF+
Sbjct: 289 AKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFL 348

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L AC H GLV+EG+ YF  M+EEFG++P ++HYGCMVDL GRAG L  A   IQ M +
Sbjct: 349 GVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM 408

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +PD  IW  LLGACRIHGN++LG  A  +L E++  N   YVL++N+YA   +W+ V EV
Sbjct: 409 QPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R +   R ++K PG SSIE++N V  F   N   P +E++Y  L ++  K+K  GYV D 
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADT 528

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
                D+EE+EKEH L  HSE+LA+AFG++ SP    ++I KNLR+C DCH + K +S++
Sbjct: 529 GMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKV 588

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
             R+I VRD NRFHHF  G CSC DYW
Sbjct: 589 YRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           DS   N+MI  Y  S   + ++ I  +M   G+  D  T  ++L   A+      G  IH
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             I++ G E N++VS  L+NMY     +  A +VFD++ +R++VSWN++I  Y  +    
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                F  MQ AG +P  +T+V +    A L      R +  +I      + +V +G A+
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRL-NVFVGTAL 284

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DMYAK G+++ A  +F+ + VK+V +WN LI+GYA NG    A++ F  M    +  P+
Sbjct: 285 IDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRM-IMEKFKPD 343

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSL 390
           + T++ +L A  H G + +G + +   +K        +    C+VD+ G+ G +D+A  L
Sbjct: 344 EVTFLGVLCACCHQGLVNEG-RTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQL 402

Query: 391 FYQVP-RSSSVPWNAIISCHGIHG 413
              +  +   + W  ++    IHG
Sbjct: 403 IQAMSMQPDPIIWRELLGACRIHG 426



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 177/366 (48%), Gaps = 23/366 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA----CRNLVDGKKIHCSVLK 56
           MI  Y    +   +V  + Q    +G+ PD  TFP VLK+    CR  + GK IHC +++
Sbjct: 113 MIRCYTDSNKHLHSVFIYTQM-WKNGIFPDSSTFPTVLKSVAQLCRQEL-GKAIHCCIIQ 170

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +GFE +V+V+ +L++MY      + AR++FD++P R+  SWNA+I+GY  +    + +D+
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             EM++ G     +T+  +L  CA    +  G  I  YI  + L  N+FV   LI+MYAK
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G++  A ++F  M  ++V +WN +I+ Y  +    +A   F+ M     +PD +T + +
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGV 350

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
                        R+    +         +     +VD+  + G ++ A  + + + ++ 
Sbjct: 351 LCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQP 410

Query: 296 DVISWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQG-TYVSILPAYSH------ 345
           D I W  L+     +G   L   AI+         E+ PN G  YV +   Y+       
Sbjct: 411 DPIIWRELLGACRIHGNIQLGEFAIKKLL------ELEPNNGENYVLLANLYARDQRWDK 464

Query: 346 VGALRQ 351
           VG +R+
Sbjct: 465 VGEVRE 470


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 325/543 (59%), Gaps = 2/543 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N L   Y K G +  A ++FD+M ER+V +WN+++A          + GFF  M+
Sbjct: 168 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 227

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G+ PD   L S+    A L D    R VH +++R G    D+ +G+++  MY + G +
Sbjct: 228 REGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCL 286

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
               AV   LP   ++S NT+I G  QNG +  A+E F MM     +  +  T+VS + +
Sbjct: 287 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISS 345

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S + AL QG +IH +V+K  +   V V TCLV MY +CG + D+  +F+    S +   
Sbjct: 346 CSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLL 405

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +A+IS +G HG G KA+  F+QM++ G  P  +TF++LL ACSHSGL  EG   F +M +
Sbjct: 406 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 465

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            +G++P +KHY C+VDL GR+G L  A   I +MP+ PD  IW  LL AC+   N ++  
Sbjct: 466 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 525

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             + R+ E+D  +   YVL+SNI A   +W  V EVR   RD  ++K PG S +E+   +
Sbjct: 526 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 585

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F TG+ +HP+ ++I + L  + AK++  GY PD S VL D+E++EKE  L+ HSE+LA
Sbjct: 586 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 645

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAF  +S P   PI++ KNLRVC DCH   K +SQ+T REI+VRD +RFHHFKDG CSC 
Sbjct: 646 IAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCR 705

Query: 703 DYW 705
           DYW
Sbjct: 706 DYW 708



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 208/418 (49%), Gaps = 17/418 (4%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG-FEWDVFVAASLLHMY 73
            + F  TSG   D +T   ++ A  +L D    +++   + +     W++         Y
Sbjct: 125 LHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGG-----Y 179

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
            + G    ARKLFD+MP R+  +WNAM++G    G   E+L    +MR EG+  D   + 
Sbjct: 180 IKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLG 239

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+   CA   ++++G  +H Y+V+ GL+ ++ V ++L +MY + G ++    V   +   
Sbjct: 240 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 299

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
            +VS N+IIA   Q+ D   A  +F  M+  G+  D++T VS  S  + L      + +H
Sbjct: 300 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 359

Query: 254 GFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           G +M+ G  ++ V+ +   +V MY++ G +  +  VF G    D    + +I+ Y  +G 
Sbjct: 360 GQVMKAG--VDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGH 417

Query: 313 ASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFV 370
             +AIE+F QMM    E  P+  T++++L A SH G   +G+     + K   +   V  
Sbjct: 418 GQKAIELFKQMMNGGAE--PSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 475

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            TC+VD+ G+ G +D+A +L   +P +   V W  ++S        D A    +++++
Sbjct: 476 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE 533



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           ALR   ++HA    +    D F A  L+  Y   G +  A  LF ++PR + + WN +  
Sbjct: 118 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 177

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
             G    GD  L   R++ DE    +  T+ +++   ++ G   E   +F  M+ E G+ 
Sbjct: 178 --GYIKNGD--LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-GMH 232

Query: 468 P 468
           P
Sbjct: 233 P 233


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/367 (56%), Positives = 265/367 (72%)

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           IL A + V AL QG ++HA +IK     DV V+  LVDMYGKCGRI+DA  +F ++    
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
              WNA+IS    HG G +A+  F QML  GV+P+ ITFV +L+ CSH+GLV EG+ YF 
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M  + GI P  +HY CMVDLFGRAG L  A NFI  MPV P+AS+WG+LLGACR+HGN+
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           EL   A ++L E+  EN G YVL+SNIYA  G+W+   +VR + +DR +KK PG S IEV
Sbjct: 184 ELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEV 243

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            NKV  F  G+ +HP+ E+IY+ L  LT +MK+ GY+P+ +FVL DVEE++KE IL  HS
Sbjct: 244 QNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHS 303

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LAIAFGIIS+PP + I++ KNLRVCGDCH  TKFIS+I  REI++RD++RFHHFKDG 
Sbjct: 304 EKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQ 363

Query: 699 CSCGDYW 705
           CSCGDYW
Sbjct: 364 CSCGDYW 370



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A +      + VH  I++ G F  DV + N +VDMY K G I  A  VF  L   DV SW
Sbjct: 9   ASVAALEQGKQVHADIIKIG-FELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASW 67

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +I+G AQ+G   EA+ +F+ M +   + PNQ T+V +L   SH G + +G      + 
Sbjct: 68  NAMISGLAQHGCGKEAVLLFEQMLQTG-VKPNQITFVVVLSGCSHAGLVDEGRNYFDSMT 126

Query: 361 KN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
           ++  +       +C+VD++G+ G +D+A++   Q+P   ++  W +++    +HG  + A
Sbjct: 127 RDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELA 186

Query: 419 LNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQE 462
                Q+++  + P++  T+V L    + +G   +  +   MM++
Sbjct: 187 ERAVEQLIE--LTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKD 229



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A IL  CA    +  G  +H  I+K G E ++ VSN L++MY K G +  A  VF +++
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           E DV SWN++I+   Q      A   F  M Q G++P+ +T V + S  +        R+
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQN 310
               + R           + +VD++ + G ++ A      +PV+   S W +L+     +
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 311 G---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           G   LA  A+E  Q++E   E   N GTYV +   Y+  G
Sbjct: 181 GNIELAERAVE--QLIELTPE---NPGTYVLLSNIYAAAG 215



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 37  VLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC +   L  GK++H  ++K+GFE DV V+  L+ MY + G    A+++F  +   D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             SWNAMISG  Q G   EA+ + ++M   GV  + IT   +L  C+ +  +  G     
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 154 YIVK-HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            + + HG+       + +++++ + G +  AL   +QM +E +   W S++ A
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGA 176


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/645 (37%), Positives = 367/645 (56%), Gaps = 50/645 (7%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC-QSGNAVEALDILDEM 120
           +V  +  ++  + R G  N A ++F+ M V+ + +WN+M++GY  + G    A  + D +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
               +    I +A  L     +D   + L      VK    +N  +S      +++ GMM
Sbjct: 64  PEPDIFSYNIMLACYL---HNADVESARLFFDQMPVKDTASWNTMISG-----FSQNGMM 115

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +F  M  R+ VSWN++I+ Y +S D   A   F              +  + S+V
Sbjct: 116 DQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFE-------------VAPVRSVV 162

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A                   W         A++  + K G I  A   FE +P+K++++W
Sbjct: 163 A-------------------W--------TAMITGFMKFGKIELAEKYFEEMPMKNLVTW 195

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +I GY +N  A   +++F+ M E     PN  +  S+L   S++ AL+ G ++H  + 
Sbjct: 196 NAMIAGYIENCQAENGLKLFKRMVESG-FRPNPSSLSSVLLGCSNLSALKLGKQVHQLIC 254

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K+ + +++   T L+ MY KCG ++DA  LF  +P+   V WNA+IS +  HG G+KAL 
Sbjct: 255 KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALY 314

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M DEG++PD ITFV++L+AC+H+G V  G  YF+ M  ++G++    HY C+VDL 
Sbjct: 315 LFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLL 374

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GR G L  A + I+ MP +P ++I+G LLGACRIH N+EL   A+  L  +D E+   YV
Sbjct: 375 GRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYV 434

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            ++N+YA + +W+ V  VR   +D  + KTPG+S IEV + V  F +G+R HP+   I++
Sbjct: 435 QLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHE 494

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           +L  L  KM+  GYVPD  + L DV E++K+ IL  HSE+LAIA+G+I  P  +PI++FK
Sbjct: 495 KLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFK 554

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCH+ TK+IS I  R IIVRD+ RFHHF+ G CSCGDYW
Sbjct: 555 NLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 201/402 (50%), Gaps = 28/402 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +I+ ++R G L+ A+  F   T+ + +     T+  +L    N     K+   +     E
Sbjct: 11  VITNHIRSGDLNSALRVFESMTVKTTV-----TWNSMLAGYSNRRGKIKVARQLFDRIPE 65

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            D+F    +L  Y        AR  FD MPV+D+ SWN MISG+ Q+G   +A ++   M
Sbjct: 66  PDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125

Query: 121 RLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
            +   VS +    A I       D  L+  L  +  V+  + +   ++      + KFG 
Sbjct: 126 PVRNSVSWN----AMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITG-----FMKFGK 176

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A + F++M  +++V+WN++IA Y ++         F  M ++G +P+  +L S+   
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 240 VAQLNDCRNSRSVHGFIMRR--GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            + L+  +  + VH  I +    W   ++  G +++ MY K G +  A  +F  +P KDV
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSW---NITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDV 293

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN +I+GYAQ+G   +A+ +F  M +   + P+  T+V++L A +H G +  GI+   
Sbjct: 294 VTWNAMISGYAQHGAGEKALYLFDKMRD-EGMKPDWITFVAVLSACNHAGFVDLGIEYFN 352

Query: 358 RVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP 395
            ++++   + V       TC+VD+ G+ G++ +A+ L  ++P
Sbjct: 353 SMVRD---YGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMP 391


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/613 (37%), Positives = 362/613 (59%), Gaps = 27/613 (4%)

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           L +M L G +M      +IL  C        G  +H +++K     ++F+   LI +Y K
Sbjct: 231 LLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTK 290

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF---TTMQQAGI------- 226
              +  A  VFD+M ER+VVSW ++I+AY Q      A   F     +   G+       
Sbjct: 291 CDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLK 350

Query: 227 -----QPDLLTLVSLTSIVAQLNDCRNS------RSVHGFIMRRGWFMED-VIIGNAVVD 274
                +P + T  +  +    L  C +S      R +H  I++  +  ED V +G++++D
Sbjct: 351 LSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNY--EDHVFVGSSLLD 408

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           MYAK G I+ A  VFE LP +DV+S   +I+GYAQ GL  EA+E+F+ ++    +  N  
Sbjct: 409 MYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQG-EGMKSNYV 467

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           TY  +L A S + AL  G ++H  V+++ +   V +   L+DMY KCG +  +  +F  +
Sbjct: 468 TYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM 527

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEG 453
              + + WNA++  +  HG+G + L  F  M +E  V+PD +T +++L+ CSH GL  +G
Sbjct: 528 YERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKG 587

Query: 454 QRYFHMMQE-EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
              F+ M   +  ++P ++HYGC+VDL GR+G +  A  FI+ MP  P A+IWG+LLGAC
Sbjct: 588 LNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGAC 647

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
           R+H N+++G  A  +L E++  N G YV++SN+YA+ G+WE V  +R L   + + K PG
Sbjct: 648 RVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPG 707

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEH 632
            SSIE++  +  F+  +R+HP+ E+I  +++ L+   K +GYVPD S VL DV+E++KE 
Sbjct: 708 RSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEK 767

Query: 633 ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFH 692
           IL  HSE+LA++FG+I+SP   PI++ KNLR+C DCHN+ K+IS++  RE+ +RD NRFH
Sbjct: 768 ILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFH 827

Query: 693 HFKDGICSCGDYW 705
               G CSC DYW
Sbjct: 828 RIVGGKCSCEDYW 840



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 217/429 (50%), Gaps = 28/429 (6%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G    F  +  +L  C   R   +G+++H  ++K  +   VF+   L+ +Y +      A
Sbjct: 238 GFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDA 297

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI--------------LDEMRLEG---- 124
             +FD+MP R+  SW AMIS Y Q G A +AL++              +D+++L      
Sbjct: 298 HNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRP 357

Query: 125 -VSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            V  +P   T A++L  C  S   + G  IH  I+K   E ++FV ++L++MYAK G + 
Sbjct: 358 WVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIH 417

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  VF+ + ERDVVS  +II+ Y Q      A   F  +Q  G++ + +T   + + ++
Sbjct: 418 EARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS 477

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L      + VH  ++ R      V++ N+++DMY+K G +  +  +F+ +  + VISWN
Sbjct: 478 GLAALDLGKQVHNHVL-RSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWN 536

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
            ++ GY+++G   E +++F +M E  ++ P+  T +++L   SH G   +G+ I   +  
Sbjct: 537 AMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSS 596

Query: 362 NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
             +  +  +    C+VD+ G+ GR+++A     ++P   ++  W +++    +H   D  
Sbjct: 597 GKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIG 656

Query: 419 LNFFRQMLD 427
               +Q+L+
Sbjct: 657 EFAGQQLLE 665



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 188/386 (48%), Gaps = 54/386 (13%)

Query: 1   MISVYVRCGRLSEAVDCFY--------------QFTLTSGLRP------DFYTFPPVLKA 40
           MIS Y + G  S+A++ F+              +  L++  RP      + +TF  VL +
Sbjct: 315 MISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTS 374

Query: 41  CRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           C +    + G++IH  ++KL +E  VFV +SLL MY + G  + AR +F+ +P RD  S 
Sbjct: 375 CTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSC 434

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
            A+ISGY Q G   EAL++   ++ EG+  + +T   +L   +    +  G  +H ++++
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLR 494

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
             +   + + N+LI+MY+K G + ++ R+FD M ER V+SWN+++  Y +  +       
Sbjct: 495 SEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKL 554

Query: 218 FTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGN----- 270
           FT M ++  ++PD +T      I+A L+ C      HG +  +G     D+  G      
Sbjct: 555 FTLMREETKVKPDSVT------ILAVLSGCS-----HGGLEDKGLNIFNDMSSGKIEVEP 603

Query: 271 ------AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMM 323
                  VVD+  + G +  A    + +P +   + W +L+     +      +++ +  
Sbjct: 604 KMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHS----NVDIGEFA 659

Query: 324 -EECNEINP-NQGTYVSILPAYSHVG 347
            ++  EI P N G YV +   Y+  G
Sbjct: 660 GQQLLEIEPGNAGNYVILSNLYASAG 685


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 356/608 (58%), Gaps = 14/608 (2%)

Query: 108 GNAVEALDILDEMRLEGVSMDPIT-------VASILPVCARSDNILSGLLIHLYIVKHGL 160
           G  +  L ++ E + E   ++ +        +  +L +CA++ + + G   H  I++ GL
Sbjct: 15  GIHIRKLTVISEAKPESSKVENVVHIDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGL 74

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E ++  SN LINMY+K  ++  A + F++M  + +VSWN++I A  Q+ +   A      
Sbjct: 75  EMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQ 134

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           MQ+ G   +  T+ S+    A          +H F ++      +  +G A++ +YAK  
Sbjct: 135 MQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAA-IDSNCFVGTALLHVYAKCS 193

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV--S 338
            I  A  +FE +P K+ ++W++++ GY QNG   EA+ +F+       +  +Q  ++  S
Sbjct: 194 SIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFR---NAQLMGFDQDPFMISS 250

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
            + A + +  L +G ++HA   K+    +++V++ L+DMY KCG I +A  +F  V    
Sbjct: 251 AVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVR 310

Query: 399 S-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           S V WNA+IS    H +  +A+  F +M   G  PD +T+V +L ACSH GL  EGQ+YF
Sbjct: 311 SIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYF 370

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +M  +  + P + HY CM+D+ GRAG +  A++ I+ MP    +S+WG+LL +C+I+GN
Sbjct: 371 DLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGN 430

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           +E   +A+  LFE++  N G ++L++NIYA   KW+ V   R L R+  ++K  G S IE
Sbjct: 431 IEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIE 490

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
           + NK+  F  G R HP+ + IY +L NL  ++K L Y  D S  L DVEE+ K+ +L  H
Sbjct: 491 IKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHH 550

Query: 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           SE+LAI FG++  P   PI+I KNLR+CGDCH + K +S+ T REIIVRD+NRFHHFKDG
Sbjct: 551 SEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDG 610

Query: 698 ICSCGDYW 705
            CSCG++W
Sbjct: 611 FCSCGEFW 618



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 208/375 (55%), Gaps = 5/375 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+ + G+  H  ++++G E D+  +  L++MY +  L + ARK F++MPV+   SWN +I
Sbjct: 57  RSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVI 116

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
               Q+    EAL +L +M+ EG   +  T++S+L  CA    IL  + +H + +K  ++
Sbjct: 117 GALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAID 176

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N FV   L+++YAK   ++ A ++F+ M E++ V+W+S++A Y Q+     A   F   
Sbjct: 177 SNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNA 236

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           Q  G   D   + S  S  A L      + VH    + G F  ++ + ++++DMYAK G 
Sbjct: 237 QLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSG-FGSNIYVSSSLIDMYAKCGC 295

Query: 282 INSACAVFEG-LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
           I  A  VF+G L V+ ++ WN +I+G+A++  A EA+ +F+ M++     P+  TYV +L
Sbjct: 296 IREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQ-RGFFPDDVTYVCVL 354

Query: 341 PAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSS 398
            A SH+G   +G K    +++ + L   V   +C++D+ G+ G +  A  L  ++P  ++
Sbjct: 355 NACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNAT 414

Query: 399 SVPWNAIISCHGIHG 413
           S  W ++++   I+G
Sbjct: 415 SSMWGSLLASCKIYG 429


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/563 (40%), Positives = 341/563 (60%), Gaps = 12/563 (2%)

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKF--GMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           HL+  + G   N  +S  L+N  A    G + +A  VF ++      +WNS+I  + QS 
Sbjct: 419 HLWKQRFG-PHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSP 477

Query: 210 DPITAHG--FFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            P+      F+  M  A   +PD  T   L     +  +    R VHGFI+R G + +DV
Sbjct: 478 SPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFG-YDQDV 536

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           ++   ++  YA  G+I +A  VFE +P +D++SWN++I+ Y Q GL  EA++++  M   
Sbjct: 537 VLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRIS 596

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           N +  +  T VS+L + +HVGAL  G+++H    +  L  ++FV   L+DMY KCG +  
Sbjct: 597 N-VGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLAS 655

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A+S+F  +P+     WN++I  +G+HG+GD+A+ FF  ML  GVRP+ ITF+ LL  CSH
Sbjct: 656 ALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 715

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            GLV EG +YFHMM  EF +KP +KHYGCMVDLFGRAG L  A   I++ P + D  +W 
Sbjct: 716 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 775

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
            LLG+C+IH N+E+G +A   L ++ S   G  VL+S IYA     +GV  +R L + RG
Sbjct: 776 TLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRG 835

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           +K TPGWS IEV ++V  F   +++HP   +IY +L  +  +   +GY  ++S ++   E
Sbjct: 836 IKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPE 895

Query: 627 EDEKEHILTS----HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682
            + +E+   +    HSE+LAIA+G+  +P  + + I KNLRVC DCHN+TKF+S+  +RE
Sbjct: 896 SNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDRE 955

Query: 683 IIVRDSNRFHHFKDGICSCGDYW 705
           IIVRD  RFHHF+ G CSC ++W
Sbjct: 956 IIVRDRVRFHHFRGGHCSCKEFW 978



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 9/294 (3%)

Query: 18  FYQFTLT-SGLRPDFYTFPPVLKACRNLVDGKK---IHCSVLKLGFEWDVFVAASLLHMY 73
           FY   L+ S  RPD YTF  +LKAC    +  K   +H  +++ G++ DV +  +L+  Y
Sbjct: 487 FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSY 546

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
              GL   A K+F++MP RD  SWN+MIS YCQ+G   EAL + D+MR+  V  D  T+ 
Sbjct: 547 AGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLV 606

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S+L  CA    +  G+ +H +  +  L  N+FV N LI+MYAK G +  AL +F+ M +R
Sbjct: 607 SLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 666

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DV +WNS+I  Y        A  FF +M  AG++P+ +T + L    +     +    V 
Sbjct: 667 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKE--GVQ 724

Query: 254 GFIMRRGWFMEDVIIGN--AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLI 304
            F M    F     I +   +VD++ + G +  A  V    P + D + W TL+
Sbjct: 725 YFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 778


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/599 (38%), Positives = 353/599 (58%), Gaps = 13/599 (2%)

Query: 117 LDEMRLEGVSMDPITVA------SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           L ++  E    +P T A      SIL +  +  ++     I  Y +K   + N  V   L
Sbjct: 14  LTKLNTEAPRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKTH-QNNPTVLTKL 72

Query: 171 INMYAK---FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           IN          M HA R+FD++ + D+V +N++   Y + +DP+ A    + +  +G+ 
Sbjct: 73  INFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLL 132

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  T  SL    A+L      + +H   ++ G   +++ +   +++MY     +++A  
Sbjct: 133 PDDYTFSSLLKACARLKALEEGKQLHCLAVKLG-VGDNMYVCPTLINMYTACNDVDAARR 191

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF+ +    V+++N +IT  A+N   +EA+ +F+ ++E + + P   T +  L + + +G
Sbjct: 192 VFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQE-SGLKPTDVTMLVALSSCALLG 250

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G  IH  V KN     V V T L+DMY KCG +DDA+S+F  +PR  +  W+A+I 
Sbjct: 251 ALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIV 310

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G +A++  R+M    V+PD ITF+ +L ACSH+GLV EG  YFH M  E+GI 
Sbjct: 311 AYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIV 370

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P +KHYGCM+DL GRAG L  A  FI  +P++P   +W  LL +C  HGN+E+  +   R
Sbjct: 371 PSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQR 430

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           +FE+D  + G YV++SN+ A  G+W+ V+ +R +  D+G  K PG SSIEVNN V  F++
Sbjct: 431 IFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFS 490

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVL-QDVEEDEKEHILTSHSERLAIAFG 646
           G+  H     ++  L  L  ++K  GYVPD S V   D+E++EKE +L  HSE+LAI +G
Sbjct: 491 GDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYG 550

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++++PP + I++ KNLRVC DCHN  KFIS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 551 LLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 234/452 (51%), Gaps = 15/452 (3%)

Query: 24  TSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR----FGLA 79
           T+ L P   +   ++  C +L + K+I    +K   + +  V   L++ +C         
Sbjct: 28  TAALEPPSSSILSLIPKCTSLRELKQIQAYTIK-THQNNPTVLTKLIN-FCTSNPTIASM 85

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + A ++FD +P  D   +N M  GY +  + + A+ +  ++   G+  D  T +S+L  C
Sbjct: 86  DHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKAC 145

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           AR   +  G  +H   VK G+  N++V   LINMY     +  A RVFD++ E  VV++N
Sbjct: 146 ARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYN 205

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +II +  +++ P  A   F  +Q++G++P  +T++   S  A L      R +H ++ + 
Sbjct: 206 AIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN 265

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G F + V +  A++DMYAK G ++ A +VF+ +P +D  +W+ +I  YA +G  S+AI +
Sbjct: 266 G-FDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISM 324

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMY 378
            + M++  ++ P++ T++ IL A SH G + +G +  H+   +  +   +    C++D+ 
Sbjct: 325 LREMKKA-KVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLL 383

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM--LDEGVRPDHI 435
           G+ GR+++A     ++P + + + W  ++S    HG  + A    +++  LD+    D++
Sbjct: 384 GRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYV 443

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              +L   C+ +G   +      MM ++  +K
Sbjct: 444 ILSNL---CARNGRWDDVNHLRKMMVDKGALK 472



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 6/319 (1%)

Query: 23  LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L SGL PD YTF  +LKAC   + L +GK++HC  +KLG   +++V  +L++MY      
Sbjct: 127 LCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDV 186

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + AR++FD +      ++NA+I+   ++    EAL +  E++  G+    +T+   L  C
Sbjct: 187 DAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A    +  G  IH Y+ K+G +  + V+  LI+MYAK G +  A+ VF  M  RD  +W+
Sbjct: 247 ALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWS 306

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           ++I AY        A      M++A +QPD +T + +    +              +   
Sbjct: 307 AMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHE 366

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISWNTLITGYAQNGLASEAIE 318
              +  +     ++D+  + G +  AC   + LP+K   I W TL++  + +G    A  
Sbjct: 367 YGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKL 426

Query: 319 VFQMMEECNEINPNQGTYV 337
           V Q + E ++   + G YV
Sbjct: 427 VIQRIFELDD--SHGGDYV 443


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 404/736 (54%), Gaps = 40/736 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y+  G   E +  F +      + P   T+  V+ AC +  +   G  +H  ++K 
Sbjct: 195 IIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKA 254

Query: 58  GFE----WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
           G E    W+     SL+  Y + G    A +LF+ +  +D  SWNAMI+   Q G    A
Sbjct: 255 GLEATNLWN-----SLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENA 309

Query: 114 LDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
           L +   M      + P  +T  S+L   +    +  G  IH +I +  LE +  ++N+LI
Sbjct: 310 LGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLI 369

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
             Y+K   +  A  +F++++ RD++SWNS++A YEQ+         F  M  +GI+PD  
Sbjct: 370 TFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSH 429

Query: 232 TLVSLTSIVAQ----LNDCRNSRSVHGFIMRR---GWFMEDVIIGNAVVDMYAKLGIINS 284
           +L  + +  ++    L   R  + +HG+I+RR   G     + + NA++ MYAK   I  
Sbjct: 430 SLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGV--SLSVSNAILKMYAKFNRIAD 487

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL-PAY 343
           A  +F+G+  +D  SWN ++ GY++N    + + +F  ++   +  P     +SIL  + 
Sbjct: 488 AEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIF--LDILKQGFPLDHVSLSILLTSC 545

Query: 344 SHVGALRQGIKIHARVIK-----NCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPR 396
             + +L+ G + HA V K     +C   D  ++    L+ MY KCG I DA  +F ++ R
Sbjct: 546 GRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMER 605

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
                W A+I+    HG   +AL  F +M  +G++P+ +TF++LL AC+H GLV EG  Y
Sbjct: 606 KDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYY 665

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN-----MPVRPD-ASIWGALLG 510
           F  M  ++G+ P ++HY CM+DLFGR+G    A + ++       P   D  ++W  LLG
Sbjct: 666 FDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLG 725

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           AC     ++LG  A+ ++ E++ E+   Y+L++N+YA+ G WE   +VR   RD+GL+K 
Sbjct: 726 ACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKE 785

Query: 571 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK 630
            G S I+  N+  +F  G+  HP+ ++IY++L  L    + +GYVP    VL DV+E EK
Sbjct: 786 VGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEK 845

Query: 631 EHILTSHSERLAIAFGIIS-SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           E IL  HSE+LA++FG+++       I++ KNLRVC DCH+W KF S + +REI++RDS 
Sbjct: 846 EAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQ 905

Query: 690 RFHHFKDGICSCGDYW 705
           RFH F+DG CSCGDYW
Sbjct: 906 RFHLFRDGSCSCGDYW 921



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 279/551 (50%), Gaps = 31/551 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK-ACRNLVDG--KKIHCSVLKL 57
           +I+ Y RCG  ++A   F Q  +  GL+P+ ++   +LK +C     G  +++H   ++ 
Sbjct: 92  LIAAYSRCGNFAQAFGLF-QKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRT 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALD 115
           GF  D  + A+ + MY R G+   A+++FD+  +   D   WN++I+ Y   G  VE L 
Sbjct: 151 GFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLR 210

Query: 116 ILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFVSNNLINM 173
           +  +M   G V+   +T AS++  C  S     G ++H  I+K GLE  NL+  N+L+  
Sbjct: 211 LFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLW--NSLVTF 268

Query: 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLL 231
           Y K G ++HA ++F+++  +DVVSWN++IAA EQ  +   A G F  M +    +QP+ +
Sbjct: 269 YGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRV 328

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T +SL S V+ L+  R  R +H  I R      D  I N+++  Y+K   +  A  +FE 
Sbjct: 329 TFLSLLSAVSGLSALRCGREIHAHIFRLS-LEVDTSITNSLITFYSKCREVGKAREIFER 387

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA--- 348
           L ++D+ISWN+++ GY QN       ++F+ M   + I P+  +   I  A S   +   
Sbjct: 388 LLLRDIISWNSMLAGYEQNEQQGRCFDIFKRM-MLSGIEPDSHSLTIIFNAASRDSSGLI 446

Query: 349 -LRQGIKIHARVIKNCL--CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
             R+G +IH  +++        + V+  ++ MY K  RI DA  +F  +    S  WNA+
Sbjct: 447 YFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAM 506

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           +  +  + + +  L  F  +L +G   DH++   LLT+C     +  G+++  ++ + F 
Sbjct: 507 MDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFN 566

Query: 466 IK--PH----LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
            +  PH    L     ++ ++ + G +  A      M  R D   W A++  C  HG   
Sbjct: 567 GQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKME-RKDVFSWTAMITGCAHHGL-- 623

Query: 520 LGAVASDRLFE 530
             AV + +LFE
Sbjct: 624 --AVEALQLFE 632



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 216/440 (49%), Gaps = 18/440 (4%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A++LFD+ P RD  SW+A+I+ Y + GN  +A  +  +M  EG+  +  ++AS+L V   
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ--MMERDVVSWN 199
           +  I     +H + ++ G   +  +    I MY++ G++  A RVFD+  ++  D++ WN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           SIIAAY      +     F  M   G + P  LT  S+ +      + +    VHG I++
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIK 253

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G  +E   + N++V  Y K G +  A  +FE +  KDV+SWN +I    Q G    A+ 
Sbjct: 254 AG--LEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALG 311

Query: 319 VFQMMEECN-EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F+ M +    + PN+ T++S+L A S + ALR G +IHA + +  L  D  +   L+  
Sbjct: 312 LFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITF 371

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KC  +  A  +F ++     + WN++++ +  + Q  +  + F++M+  G+ PD  + 
Sbjct: 372 YSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSL 431

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFG-----IKP---HLKHYGCMVDLFGRAGHLGMA 489
             +  A S     S G  YF   +E  G     I P    L     ++ ++ +   +  A
Sbjct: 432 TIIFNAASRD---SSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADA 488

Query: 490 HNFIQNMPVRPDASIWGALL 509
               + M  R D+  W A++
Sbjct: 489 EKIFKGMKNR-DSYSWNAMM 507



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 200/439 (45%), Gaps = 26/439 (5%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           ++ A ++FD    RDV+SW+++IAAY +  +   A G F  M   G+QP+  +L SL  +
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE--GLPVKDV 297
                +    R +HG+ +R G F  D  I  A + MY++ G++  A  VF+   L   D+
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTG-FGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN++I  Y  +G   E + +F  M     + P + TY S++ A    G  + G  +H 
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHG 249

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+IK  L     +   LV  YGKCG +  A  LF ++ R   V WNA+I+ +   G+G+ 
Sbjct: 250 RIIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGEN 308

Query: 418 ALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
           AL  FR+ML  +  V+P+ +TF+SLL+A S    +  G R  H       ++        
Sbjct: 309 ALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCG-REIHAHIFRLSLEVDTSITNS 367

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL---------GAC-RIHGNMELGAVAS 525
           ++  + +   +G A    + + +R D   W ++L         G C  I   M L  +  
Sbjct: 368 LITFYSKCREVGKAREIFERLLLR-DIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEP 426

Query: 526 DRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 585
           D        N         IY   GK     E+      R    TPG  S+ V+N +   
Sbjct: 427 DSHSLTIIFNAASRDSSGLIYFRRGK-----EIHGYILRR---ITPGGVSLSVSNAILKM 478

Query: 586 YTGNRTHPKYEKIYDELRN 604
           Y         EKI+  ++N
Sbjct: 479 YAKFNRIADAEKIFKGMKN 497



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL- 441
           R+  A  LF   P    + W+A+I+ +   G   +A   F++M+ EG++P+  +  SLL 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN-FIQNMPVRP 500
            +CS   +    Q +   ++  FG+   ++     + ++ R G L  A   F +   +  
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIR--AAWITMYSRCGVLEDAQRVFDETSLLAL 187

Query: 501 DASIWGALLGACRIHG 516
           D  +W +++ A   HG
Sbjct: 188 DILLWNSIIAAYIFHG 203


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 338/576 (58%), Gaps = 5/576 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A+IL  C  S  +  G  +H  ++  GL  +  ++  L+++YA  G++  A R+FD+M  
Sbjct: 67  ATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPN 126

Query: 193 R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSR 250
           + +V  WN +I AY +      A   +  M   G ++PD  T   +    A L D    R
Sbjct: 127 QGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGR 186

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VH  +MR  W   DV +   ++DMYAK G ++ A AVF+   V+D + WN++I    QN
Sbjct: 187 EVHDRVMRTSW-AADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQN 245

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G  +EA+ + + M     I P   T VS + A +  GAL +G ++H    +        +
Sbjct: 246 GRPAEALALCRNMA-AEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKL 304

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG- 429
            T L+DMY K G +  A  LF Q+     + WNA+I   G+HG  D A   FR+M +E  
Sbjct: 305 KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQ 364

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V PDHITFV +L+AC+H G+V E +  F +M   + IKP ++HY C+VD+ G +G    A
Sbjct: 365 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEA 424

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
            + I+ M V+PD+ IWGALL  C+IH N+EL  +A  +L E++ E+ G YVL+SNIYA  
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQS 484

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           GKWE    VR L  +RGLKK    S IE+  K   F  G+ +HP+ ++IY+EL  L   +
Sbjct: 485 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLI 544

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
              GYVPD + V  +VE+DEK +++  HSERLAIAFG+IS+PP + + + KNLRVC DCH
Sbjct: 545 SQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCH 604

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              K ISQI +REII+RD NR+HHF +G CSC D+W
Sbjct: 605 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 227/455 (49%), Gaps = 38/455 (8%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L++C   R +  G+++H  +L  G   D  +A  L+ +Y   GL +VAR+LFD+MP
Sbjct: 66  YATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMP 125

Query: 91  VRDSGS---WNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNI 145
             + G+   WN +I  Y + G    A+++  EM   G SM+P   T   +L  CA   ++
Sbjct: 126 --NQGNVFLWNVLIRAYARDGPREAAIELYREMLACG-SMEPDNFTYPPVLKACAALLDL 182

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
            +G  +H  +++     ++FV   LI+MYAK G +  A  VFD    RD V WNS+IAA 
Sbjct: 183 GAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAAC 242

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+  P  A      M   GI P ++TLVS  S  A        R +HG+  RRG+  +D
Sbjct: 243 GQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQD 302

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  +++DMYAK G +  A  +F+ L  +++ISWN +I G+  +G A  A E+F+ M  
Sbjct: 303 K-LKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRN 361

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-----------TCL 374
             ++ P+  T+V +L A +H G +++  ++          FD+ V            TCL
Sbjct: 362 EAQVMPDHITFVGVLSACNHGGMVQEAKEV----------FDLMVTVYSIKPMVQHYTCL 411

Query: 375 VDMYGKCGRIDDAMSLFY-QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP- 432
           VD+ G  GR  +A  +    + +  S  W A+++   IH   + A     ++++  + P 
Sbjct: 412 VDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIE--LEPE 469

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           D   +V L    + SG   E  R   +M    G+K
Sbjct: 470 DAGNYVLLSNIYAQSGKWEEAARVRKLMTNR-GLK 503



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 185/387 (47%), Gaps = 13/387 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y R G    A++ + +      + PD +T+PPVLKAC  L+D   G+++H  V++ 
Sbjct: 136 LIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRT 195

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVFV A L+ MY + G  + A  +FD   VRD+  WN+MI+   Q+G   EAL + 
Sbjct: 196 SWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALC 255

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG++   +T+ S +   A +  +  G  +H Y  + G      +  +L++MYAK 
Sbjct: 256 RNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKS 315

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G +  A  +FDQ+  R+++SWN++I  +        A   F  M+ +A + PD +T V +
Sbjct: 316 GWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGV 375

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S        + ++ V   ++        V     +VD+    G    A  V +G+ VK 
Sbjct: 376 LSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKP 435

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVGALRQGI 353
           D   W  L+ G   +    + +E+ ++ + +  E+ P + G YV +   Y+  G   +  
Sbjct: 436 DSGIWGALLNGCKIH----KNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAA 491

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGK 380
           ++   +    L     +A   +++ GK
Sbjct: 492 RVRKLMTNRGL--KKIIACSWIELKGK 516



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 6/188 (3%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N   Y +IL +     A+R G ++HAR++ + L  D  +AT LVD+Y  CG +  A  LF
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 392 YQVPRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGL 449
            ++P   +V  WN +I  +   G  + A+  +R+ML  G + PD+ T+  +L AC+    
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           +  G+  +  +M+  +     +     ++D++ + G +  A     +  VR DA +W ++
Sbjct: 182 LGAGREVHDRVMRTSWAADVFV--CAGLIDMYAKCGCVDEAWAVFDSTTVR-DAVVWNSM 238

Query: 509 LGACRIHG 516
           + AC  +G
Sbjct: 239 IAACGQNG 246


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/627 (38%), Positives = 361/627 (57%), Gaps = 8/627 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ Y +CGR + +++ F Q   T+ + PD Y    VL AC     L  GK+IH  VL+ 
Sbjct: 201 IIAGYTKCGRSAVSLELFAQMRETN-VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 259

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DV V   L+  Y +       RKLFD M V++  SW  MISGY Q+    EA+ + 
Sbjct: 260 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 319

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   G   D     S+L  C   + +  G  +H Y +K  LE + FV N LI+MYAK 
Sbjct: 320 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKS 379

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
            ++  A +VFD M E++V+S+N++I  Y        A   F  M+     P LLT VSL 
Sbjct: 380 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 439

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            + A L     S+ +HG I++ G  + D+  G+A++D+Y+K   +  A  VFE +  KD+
Sbjct: 440 GVSASLFALELSKQIHGLIIKFGVSL-DLFAGSALIDVYSKCSYVKDARHVFEEMNEKDI 498

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + WN +  GY Q+    EA++++  ++   +  PN+ T+ +++ A S++ +LR G + H 
Sbjct: 499 VVWNAMFFGYTQHLENEEALKLYSTLQFSRQ-KPNEFTFAALITAASNLASLRHGQQFHN 557

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L F  FV   LVDMY KCG I++A  +F        V WN++IS H  HG+ ++
Sbjct: 558 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 617

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  FR+M+ EG++P+++TFV++L+ACSH+G V +G  +F+ M   FGIKP  +HY C+V
Sbjct: 618 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVV 676

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            L GR+G L  A  FI+ MP+ P A +W +LL ACRI GN+ELG  A++     D ++ G
Sbjct: 677 SLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 736

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y+L+SNI+A+ G W  V +VR       + K PG S IEVNNKV++F   + TH + + 
Sbjct: 737 SYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD- 795

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQD 624
           I   L  L   +K  GYVPD + +L +
Sbjct: 796 IGSVLDILIQHIKGAGYVPDATALLMN 822



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/524 (28%), Positives = 267/524 (50%), Gaps = 11/524 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           M+S+Y + G   EA+  F      SG  P+ +    V++AC  L     G ++H  V++ 
Sbjct: 99  MVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRS 158

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V  SL+  Y + G    AR +FD +  + + +W  +I+GY + G +  +L++ 
Sbjct: 159 GFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELF 218

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR   V  D   V+S+L  C+  + +  G  IH Y+++ G E ++ V N LI+ Y K 
Sbjct: 219 AQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC 278

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             ++   ++FDQM+ ++++SW ++I+ Y Q++    A   F  M + G +PD     S+ 
Sbjct: 279 NRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVL 338

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +           R VH + ++      D  + N ++DMYAK  ++  A  VF+ +  ++V
Sbjct: 339 TSCGSREALEQGRQVHAYTIKAN-LESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 397

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           IS+N +I GY+     SEA+E+F  M       P+  T+VS+L   + + AL    +IH 
Sbjct: 398 ISYNAMIEGYSSQEKLSEALELFHEM-RVRLFPPSLLTFVSLLGVSASLFALELSKQIHG 456

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK  +  D+F  + L+D+Y KC  + DA  +F ++     V WNA+   +  H + ++
Sbjct: 457 LIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEE 516

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--PHLKHYGC 475
           AL  +  +     +P+  TF +L+TA S+   +  GQ+ FH    + G+   P + +   
Sbjct: 517 ALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTN--A 573

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           +VD++ + G +  A     N  +  D   W +++     HG  E
Sbjct: 574 LVDMYAKCGSIEEARKMF-NSSIWRDVVCWNSMISTHAQHGEAE 616



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 249/487 (51%), Gaps = 8/487 (1%)

Query: 27  LRPDFYTFPPVLK--ACRN-LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           LRP    F  +L+    RN ++  K IH  ++  G + D F+A  L+++  +    + AR
Sbjct: 23  LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNAR 82

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARS 142
            +FD MP ++  +W++M+S Y Q G + EAL + +D  R  G   +   +AS++  C + 
Sbjct: 83  VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 142

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H ++V+ G + +++V  +LI+ Y+K G +  A  VFDQ+ E+  V+W +II
Sbjct: 143 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTII 202

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y +      +   F  M++  + PD   + S+ S  + L      + +H +++RRG  
Sbjct: 203 AGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTE 262

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           M DV + N ++D Y K   + +   +F+ + VK++ISW T+I+GY QN    EA+++F  
Sbjct: 263 M-DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 321

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M       P+     S+L +     AL QG ++HA  IK  L  D FV   L+DMY K  
Sbjct: 322 MNRLG-WKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSN 380

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            + DA  +F  +   + + +NA+I  +    +  +AL  F +M      P  +TFVSLL 
Sbjct: 381 LLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL- 439

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
             S S    E  +  H +  +FG+   L     ++D++ +  ++  A +  + M  + D 
Sbjct: 440 GVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DI 498

Query: 503 SIWGALL 509
            +W A+ 
Sbjct: 499 VVWNAMF 505



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 142/279 (50%), Gaps = 2/279 (0%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           +Q   ++P      +L  +    N   + + +HG I+  G    D  + N ++++ +K  
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSG-LQSDTFLANILINVCSKSD 76

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +++A  VF+ +P K++I+W+++++ Y+Q G + EA+ VF  ++  +  +PN+    S++
Sbjct: 77  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 136

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A + +G + +G ++H  V+++    DV+V T L+D Y K G I++A  +F Q+   ++V
Sbjct: 137 RACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV 196

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W  II+ +   G+   +L  F QM +  V PD     S+L+ACS    + EG +  H  
Sbjct: 197 TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL-EGGKQIHAY 255

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
               G +  +     ++D + +   +         M V+
Sbjct: 256 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK 294


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 349/590 (59%), Gaps = 11/590 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M L G S       + +  C     +  G  +H  ++       +F+   L+ MY + G 
Sbjct: 33  MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 92

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  V D+M ER VVSW ++I+ Y Q+   + A   F  M +AG  P+  TL ++ + 
Sbjct: 93  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            +        + VH  +++   F   + +G++++DMYAK   I  A  VF+ LP +DV+S
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTN-FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVS 211

Query: 300 WNTLITGYAQNGLASEAIEVFQMM----EECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              +I+GYAQ GL  EA+++F+ +     +CN +     T+ +++ A S + +L  G ++
Sbjct: 212 CTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHV-----TFTTLVTALSGLASLDYGKQV 266

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA +++  L F V +   L+DMY KCG++  +  +F  +   S V WNA++  +G HG G
Sbjct: 267 HALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLG 326

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            + ++ F+ +  E V+PD +T +++L+ CSH GLV EG   F  + +E     H  HYGC
Sbjct: 327 HEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGC 385

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL GR+G L  A N I+NMP     SIWG+LLGACR+H N+ +G + + +L E++ EN
Sbjct: 386 IIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN 445

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YV++SNIYA  G W+ V +VR L  ++ + K PG S I ++  +  F++  R HP  
Sbjct: 446 AGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSK 505

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           + I  +++ +   +K+ G+VPD S VL DV++++KE +L  HSE+LAI FG++++PP   
Sbjct: 506 KDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLT 565

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLR+C DCHN+ KF+S++ EREI +RD NRFH    G C+CGDYW
Sbjct: 566 IRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 212/395 (53%), Gaps = 12/395 (3%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G    F+ +   + AC   R L +G+++H  ++   +   VF+   L+ MY R G  + A
Sbjct: 37  GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDA 96

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R + D MP R   SW  MISGY Q+   VEALD+  +M   G   +  T+A++L  C+  
Sbjct: 97  RNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGP 156

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I  G  +H  +VK   E ++FV ++L++MYAK   ++ A RVFD + ERDVVS  +II
Sbjct: 157 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 216

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR--G 260
           + Y Q      A   F  +   G+Q + +T  +L + ++ L      + VH  I+R+   
Sbjct: 217 SGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELP 276

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           +F   V + N+++DMY+K G +  +  VF+ +  + V+SWN ++ GY ++GL  E I +F
Sbjct: 277 FF---VALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 333

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYG 379
           + + +  E+ P+  T +++L   SH G + +G+ I   V+K            C++D+ G
Sbjct: 334 KDLHK--EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 391

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           + GR++ A++L   +P  S+   W +++    +H 
Sbjct: 392 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHA 426


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 325/543 (59%), Gaps = 2/543 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N LI  Y K G +  A ++FD+M  R+V +WN+++A    S     + GFF  M+
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G+QPD   L SL    A L D  + R VH +++R G    D+ +G+++  MY + G +
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGFL 225

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
               A    LP  +++S NT I+G  QNG A  A+E F +M     +  N  T+VS + +
Sbjct: 226 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG-VEANAVTFVSAVTS 284

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S + AL QG +IHA  IK  +   V V T LV MY +CG + D+  +  +   +  V  
Sbjct: 285 CSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLC 344

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +A+IS +G HG G KA+  F+QM+  G  P+ +TF++LL ACSHSGL  EG   F +M +
Sbjct: 345 SAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTK 404

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            +G++P +KHY C+VDL GR+G L  A + I +MPV+PD  IW  LL AC+     ++  
Sbjct: 405 TYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAE 464

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             ++R+ E+D  +   YVL+SNI A   +WE V +VR   R++ ++K PG S +E+  ++
Sbjct: 465 RIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQI 524

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F TG+ +H +  +I + L  +  +++  GY PD S V  D+E++EKE  L  HSE+LA
Sbjct: 525 HQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLA 584

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAF  +S P   PI++ KNLRVC DCH   K +S++  REI+VRD +RFHHFKDG CSCG
Sbjct: 585 IAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCG 644

Query: 703 DYW 705
           DYW
Sbjct: 645 DYW 647



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 188/371 (50%), Gaps = 13/371 (3%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W++ +       Y + G    ARKLFD+MP R+  +WNAM++G   SG   E+L     M
Sbjct: 111 WNILIGG-----YVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAM 165

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R EG+  D   + S+   CA   +++SG  +H Y+V+ GL+ ++ V ++L +MY + G +
Sbjct: 166 RREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFL 225

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R        +   ++VS N+ I+   Q+ D   A  FF  M+ AG++ + +T VS  +  
Sbjct: 226 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 285

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           + L      + +H   ++ G  ++ V+ +  ++V MY++ G +  +  V       D++ 
Sbjct: 286 SDLAALAQGQQIHALAIKTG--VDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 343

Query: 300 WNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            + +I+ Y  +G   +A+ +F QMM    E  PN+ T++++L A SH G   +G+     
Sbjct: 344 CSAMISAYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHSGLKDEGMNCFEL 401

Query: 359 VIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           + K   L   V   TC+VD+ G+ G +++A  L   +P +   V W  ++S      + D
Sbjct: 402 MTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFD 461

Query: 417 KALNFFRQMLD 427
            A     ++++
Sbjct: 462 MAERIAERVIE 472


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/538 (41%), Positives = 324/538 (60%), Gaps = 10/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N +++ Y +   M  A   F+ M  +D  SWN++I  + Q+     A   F  M    + 
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV- 100

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                 V+  ++++   +C +  S      +  +  + V+   A++  Y KLG I  A  
Sbjct: 101 ------VTWNAMISGYVECGDLDSALKLFEKAPF--KSVVAWTAMITGYMKLGRIGLAER 152

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +FE +P K++++WN +I GY +N  A + +++F+ M     I PN  T  S L   S + 
Sbjct: 153 LFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFG-IQPNSSTLSSALLGCSELS 211

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL+ G ++H  V K+ LC D    T L+ MY KCG ++D   LF QVPR   V WNA+IS
Sbjct: 212 ALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMIS 271

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG+G KAL  F +M+++G++PD ITFV++L AC+H+G    G +YFH M +++G+ 
Sbjct: 272 GYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLV 331

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
               HY CMVDL GRAG L  A + I+ MP +P A+++G LLGACRIH N E+   AS +
Sbjct: 332 AKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQK 391

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L  +D  +   YV ++N+YA   +W+ V  VR   +   + KTPG+S IEV +    F +
Sbjct: 392 LLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRS 451

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G++ HP+   I+ +L+ L  KMK  GYVPD  F L DV E++KE +L  HSE+LAIA+G+
Sbjct: 452 GDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGL 511

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I  PP +PI++FKNLRVCGDCH   K+ISQI  REIIVRD+ RFHHFKDG CSC DYW
Sbjct: 512 IKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 172/337 (51%), Gaps = 11/337 (3%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E D     ++L  Y R      A+  F+DMP++D+ SWN MI+G+ Q+    +A D+   
Sbjct: 35  EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLI 94

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M  + V      ++  +  C   D+ L        + +     ++     +I  Y K G 
Sbjct: 95  MPTKNVVTWNAMISGYVE-CGDLDSALK-------LFEKAPFKSVVAWTAMITGYMKLGR 146

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A R+F++M E+++V+WN++IA Y +++        F TM   GIQP+  TL S    
Sbjct: 147 IGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLG 206

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            ++L+  +  R VH  + +     +D   G +++ MY K G++     +F  +P +DV++
Sbjct: 207 CSELSALQLGRQVHQLVCKSP-LCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVT 265

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHAR 358
           WN +I+GYAQ+G   +A+ +F  M E   + P+  T+V++L A +H G    G+K  H+ 
Sbjct: 266 WNAMISGYAQHGEGKKALGLFDEMIE-KGMKPDWITFVAVLMACNHAGFTDLGVKYFHSM 324

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
                L       TC+VD+ G+ G++ +A+ L  ++P
Sbjct: 325 AKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMP 361



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 17/311 (5%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D +  N ++  Y +   +  A A FE +P+KD  SWNT+ITG+AQN    +A ++F +M 
Sbjct: 37  DAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMP 96

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGR 383
             N +     T+ +++  Y   G L   +K+  +       F   VA T ++  Y K GR
Sbjct: 97  TKNVV-----TWNAMISGYVECGDLDSALKLFEKAP-----FKSVVAWTAMITGYMKLGR 146

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           I  A  LF ++P  + V WNA+I+ +  + + +  +  FR M+  G++P+  T  S L  
Sbjct: 147 IGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLG 206

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS    +  G R  H +  +  +         ++ ++ + G L         +P R D  
Sbjct: 207 CSELSALQLG-RQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVP-RRDVV 264

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYY-VLMSNIYANVGKWEGVDEVRS 560
            W A++     HG  +      D + E  +  + + +  VLM+  +A      GV    S
Sbjct: 265 TWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDL-GVKYFHS 323

Query: 561 LARDRGLKKTP 571
           +A+D GL   P
Sbjct: 324 MAKDYGLVAKP 334



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y+   R  + V  F +  +  G++P+  T    L  C  L     G+++H  V K 
Sbjct: 168 MIAGYIENHRAEDGVKLF-RTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               D     SL+ MYC+ G+     KLF  +P RD  +WNAMISGY Q G   +AL + 
Sbjct: 227 PLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLF 286

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           DEM  +G+  D IT  ++L  C
Sbjct: 287 DEMIEKGMKPDWITFVAVLMAC 308



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 89/193 (46%), Gaps = 18/193 (9%)

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L  M  K G++ +A  LF ++P   +V +N ++SC+  +   ++A  FF  M  +   
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIK--- 67

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            D  ++ +++T  + +  + + +  F +M  +     ++  +  M+  +   G L  A  
Sbjct: 68  -DTPSWNTMITGFAQNQQMDKARDLFLIMPTK-----NVVTWNAMISGYVECGDLDSALK 121

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVA-SDRLFEVDSEN--VGYYVLMSNIYAN 548
             +  P +   + W A+     I G M+LG +  ++RLFE   E   V +  +++    N
Sbjct: 122 LFEKAPFKSVVA-WTAM-----ITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIEN 175

Query: 549 VGKWEGVDEVRSL 561
               +GV   R++
Sbjct: 176 HRAEDGVKLFRTM 188


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 351/591 (59%), Gaps = 14/591 (2%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G S +  T    +  CA     ++G  +H ++ K G     FV  +LI+MY K  +
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 180 MRHALRVFDQ--MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           + +A ++FD+     +  V +NS+++ Y  ++        F  M++ G++ + +T++ L 
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                  +      VHGF ++ G  M D  +GN ++ MY K G I+    +F+ +P K +
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDM-DSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I+WN +I GYAQNGLA+  +E+++ ME      P+  T V +L + +H+GAL  G ++  
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMES-KGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           ++       + F+   LV+MY +CG +  A  +F  +P  S V W AII  +G+HGQG+ 
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEV 298

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M+  G++PD   FVS+L+ACSH+GL ++G  YF +M+ ++G++P  +HY CMV
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   I++M VR D ++WGALLGAC+IH N+EL  +A +++ E++  N G
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YYVL+SN+Y   G  EG+  VR L R R LKK PG S +E   +V +F+ G+R HP+  +
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNE 478

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTS---HSERLAIAFGIISSPPKS 654
           IY +L  L   +K L             + + +E  L S   HSE+LA+AF ++++  ++
Sbjct: 479 IYKKLNELENLVKDLDGCKKN-------DHERREEYLNSMGVHSEKLAVAFALLNTRKET 531

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I I KNLR+CGDCH + K +S+I +R+ +VRD+ RFHHFK+G CSC +YW
Sbjct: 532 EIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 236/468 (50%), Gaps = 15/468 (3%)

Query: 23  LTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L SG  P+ +TFP  +K+C  L   + GK++HC V K G   + FV  SL+ MY +  L 
Sbjct: 2   LRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLI 61

Query: 80  NVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
           + ARKLFD+ P   + +  +N+++SGY  +    + + +  EMR  GV ++ +T+  ++ 
Sbjct: 62  DNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQ 121

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            C    N+  G+ +H + VK GL+ +  V N L+ MY K G +    ++FD+M  + +++
Sbjct: 122 PCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLIT 181

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++I  Y Q+         +  M+  G  PD LTLV + S  A L      + V   + 
Sbjct: 182 WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKME 241

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
             G F  +  + NA+V+MYA+ G +  A  +F+G+PVK V+SW  +I GY  +G    A+
Sbjct: 242 GFG-FSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAV 300

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVD 376
            +F  M     I P+   +VS+L A SH G   +G+     +  K  L       +C+VD
Sbjct: 301 GLFDEMIR-GGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVD 359

Query: 377 MYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           + G+ GR+++A  L   +  R+    W A++    IH   + A   F Q+++  + P + 
Sbjct: 360 LLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIE--LEPTNT 417

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR 482
            +  LL+         EG     M+  +  +K   K  GC  V+  GR
Sbjct: 418 GYYVLLSNVYTEAGNLEGILRVRMLMRKRKLK---KDPGCSYVEFKGR 462


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/744 (33%), Positives = 397/744 (53%), Gaps = 41/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +  R +EA+  F++  + SG+ P+ Y+F  +L AC   ++   G ++H   +KL
Sbjct: 174 LISSFSKLNRETEAIQLFFRMRI-SGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKL 232

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+   VFVA +L+ +Y + G  + A  LFD+MP RD  SWN MIS   +  +  +AL++ 
Sbjct: 233 GYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELF 292

Query: 118 DEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             + + +G   D  T++++L  CAR    + G  IH Y ++ GLE NL VSN +I  Y +
Sbjct: 293 RVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTR 352

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQ----------------------------- 207
            G + H   +F++M  RD+++W  +I AY +                             
Sbjct: 353 CGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGF 412

Query: 208 --SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +N+ + A   F  M Q G +    TL  + +    L     SR +HGFI++ G F  +
Sbjct: 413 CKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFG-FRSN 471

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITGYAQNGLASEAIEVFQMM 323
             I  A++DM +K G ++ A  +F+ L     + I   ++I GYA+NGL  EAI +F   
Sbjct: 472 ACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRC 531

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    +  ++  + SIL     +G    G +IH + +K     ++ V   ++ MY KC  
Sbjct: 532 QSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYN 591

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           IDDA+  F  +P    V WN +I+   +H QGD+AL  +  M   G++PD ITFV +++A
Sbjct: 592 IDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSA 651

Query: 444 --CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
              + S L+ E +  F  M+    ++P  +HY  +V + G  G L  A   I  MP  P+
Sbjct: 652 YKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPE 711

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
            S+W ALL  CR+H N  +G   +  +  ++  +   YVL+SN+YA  G+W   + VR  
Sbjct: 712 VSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVREN 771

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            RDRGL+K P  S + +  ++  FY  +++HP+   IY  L  L  K    GY PD SFV
Sbjct: 772 MRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCLKAGYEPDMSFV 831

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           LQ+VEE +K+  L  HS +LA  +G++ + P  PI++ KN+ +C DCH + K+ + +T+R
Sbjct: 832 LQEVEEQQKKDFLFYHSAKLAATYGLLKTRPGEPIRVVKNILLCRDCHTFLKYATVVTQR 891

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EII RD++ FH F +G CSC  YW
Sbjct: 892 EIIFRDASGFHCFSNGQCSCKGYW 915



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 254/551 (46%), Gaps = 43/551 (7%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            + +H S+LKLG   D  +  +++  Y + GL   A ++F  M   D  S++A+IS + +
Sbjct: 123 ARALHASILKLG--EDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSK 180

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
                EA+ +   MR+ G+  +  +  +IL  C RS  +  GL +H   +K G    +FV
Sbjct: 181 LNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFV 240

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAG 225
           +N LI +Y K G + HA+ +FD+M +RD+ SWN++I++  +      A   F  + Q  G
Sbjct: 241 ANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKG 300

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
            + D  TL +L +  A+ +     R +H + +R G    ++ + NA++  Y + G +N  
Sbjct: 301 FKADQFTLSTLLTACARCHARIQGREIHAYAIRIG-LENNLSVSNAIIGFYTRCGSLNHV 359

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN----------PNQG- 334
            A+FE +PV+D+I+W  +IT Y + GL   A+++F  M E N ++           N+G 
Sbjct: 360 AALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGL 419

Query: 335 -------------------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
                              T   ++ A   +  L    +IH  +IK     +  +   L+
Sbjct: 420 KALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALI 479

Query: 376 DMYGKCGRIDDAMSLFYQVPR--SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP- 432
           DM  KCGR+DDA  +F  +     +S+   ++I  +  +G  ++A+  F +   EG    
Sbjct: 480 DMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVL 539

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D + F S+L  C   G    G++  H    + G    L     ++ ++ +  ++  A   
Sbjct: 540 DEVAFTSILGVCGTLGFHEVGKQ-IHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKA 598

Query: 493 IQNMPVRPDASIWGALLGACRIH--GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
              MP   D   W  L+    +H  G+  L   +S     +  + + + +++S       
Sbjct: 599 FNTMPGH-DVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSS 657

Query: 551 KWEGVDEVRSL 561
               +DE RSL
Sbjct: 658 NL--LDECRSL 666



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 12/321 (3%)

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           DL  L+ L+    +  D   +R++H  I++ G   ED  +GNAV+  Y KLG++  A  V
Sbjct: 106 DLFNLLRLS---VKYTDIDLARALHASILKLG---EDTHLGNAVIAAYIKLGLVVDAYEV 159

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F G+   DV+S++ LI+ +++    +EAI++F  M   + I PN+ ++V+IL A      
Sbjct: 160 FMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMR-ISGIEPNEYSFVAILTACIRSLE 218

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L  G+++HA  IK      VFVA  L+ +YGKCG +D A+ LF ++P+     WN +IS 
Sbjct: 219 LEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISS 278

Query: 409 HGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
                  +KAL  FR +  ++G + D  T  +LLTAC+      +G R  H      G++
Sbjct: 279 LVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQG-REIHAYAIRIGLE 337

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
            +L     ++  + R G L       + MPVR D   W  ++ A    G ++L     ++
Sbjct: 338 NNLSVSNAIIGFYTRCGSLNHVAALFERMPVR-DIITWTEMITAYMEFGLVDLAVDMFNK 396

Query: 528 LFEVDSENVGYYVLMSNIYAN 548
           + E +S  V Y  L++    N
Sbjct: 397 MPEKNS--VSYNALLTGFCKN 415


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/772 (32%), Positives = 403/772 (52%), Gaps = 78/772 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQF---TLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSV 54
           MIS Y + G  S + + F      T   G   D ++F  V+KAC +L D +   ++H  V
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD-------------------------- 88
            KLGF  +  +  S++ MY + G  ++A  +F D                          
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKAL 232

Query: 89  -----MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
                MP RD  SWN +IS + Q G  V+ L +  EM  +G S + +T  S+L  CA + 
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTS 292

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
           ++  G  +H  I++     +L   N LI+MYAK G +  A RVF  + E D +SWNS+I 
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLIT 352

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                     A   F  M+++ +  D   L ++  + +  +       +HG+ ++ G   
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSG-MG 411

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG----------------- 306
               +GNA++ MYAK G  + A  VF  +P+++ ISW  +IT                  
Sbjct: 412 SSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMM 471

Query: 307 --------------YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
                         Y QNG + E ++++  M   N + P+  T+ + + A + +  ++ G
Sbjct: 472 PERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRS-NGVQPDWITFTTSIRACADLAIVKLG 530

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
           +++     K  L  +V VA  +V MY +CG I +A + F  +     + WNA+++    +
Sbjct: 531 MQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQN 590

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G K ++ F  ML    +P+HI++VS+L+ CSH GLV+EG+ YF  M   FGI P  +H
Sbjct: 591 GLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEH 650

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           + CMVDL GRAG L  A + I+ MP +P+A++W ALLG+CR+H ++ L   A+ +L E+D
Sbjct: 651 FSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELD 710

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            E    YVL+SN+Y+  G+ + V ++R L + +G++ + G S IEV+N+V +F     +H
Sbjct: 711 VEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSH 770

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           P+ +++Y +L  +   ++  G    K   ++      K++    HSE+LA AFG+++ P 
Sbjct: 771 PQIKEVYLKLEEMMKMIEDTG----KYITVESSVHRSKKY----HSEKLAFAFGLLNLPS 822

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
             PI + KNLRVC DCH   K +S +T RE+I+RD  RFHHFKDGICSC DY
Sbjct: 823 WMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 151/572 (26%), Positives = 244/572 (42%), Gaps = 119/572 (20%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA-------------NV------------ 81
            +K+H  ++  G +  +F+  +LLHMY   GL              N+            
Sbjct: 27  ARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVS 86

Query: 82  ------ARKLFDDMPVR--DSGSWNAMISGYCQSGNAVEALDILDEMRLE----GVSMDP 129
                 A KLFD+MPVR  DS SW  MISGY Q+G    + +    M  +    G + DP
Sbjct: 87  SSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDP 146

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR-------- 181
            +  S++  C    +    + +H  + K G      + N+++ MY K G +         
Sbjct: 147 FSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFD 206

Query: 182 -----------------------HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF 218
                                   AL++F++M ERD VSWN++I+ + Q    +     F
Sbjct: 207 IERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMF 266

Query: 219 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME---DVIIGNAVVDM 275
             M   G  P+ +T  S+ S  A  +D +    +H  I+R    ME   D++ GN ++DM
Sbjct: 267 VEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR----MEHSLDLVFGNGLIDM 322

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YAK G ++ A  VF+ L   D ISWN+LITG    GL  +A+ +F  M   + +  ++  
Sbjct: 323 YAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRR-SSVVLDEFI 381

Query: 336 YVSIL-----PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA--- 387
             +IL     P Y+  G L     +H   IK+ +     V   ++ MY KCG  D A   
Sbjct: 382 LPTILGVCSGPDYASTGEL-----LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLV 436

Query: 388 ---MSL-------------------------FYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
              M L                         F  +P  + V WN+++S +  +G  ++ L
Sbjct: 437 FRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGL 496

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             +  M   GV+PD ITF + + AC+   +V  G +       +FG+  ++     +V +
Sbjct: 497 KLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVV-THATKFGLSLNVSVANSIVTM 555

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           + R G +  A N   ++  + D   W A+L A
Sbjct: 556 YSRCGLIKEAKNTFDSIDDK-DLISWNAMLAA 586



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 173/394 (43%), Gaps = 43/394 (10%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMER--DVVSWNSIIAAYEQSNDPITAHGFFTT 220
           N+F  N +I        M  A ++FD+M  R  D VSW ++I+ Y Q+     +   F+ 
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 221 M----QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
           M       G   D  +  S+      L D R +  +H  + + G+ ME   I N+VV MY
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGME-TCIQNSVVGMY 191

Query: 277 AKLGIIN-------------------------------SACAVFEGLPVKDVISWNTLIT 305
            K G ++                                A  +F  +P +D +SWNTLI+
Sbjct: 192 VKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLIS 251

Query: 306 GYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            ++Q+G   + + +F  +E CN+  +PN  TY S+L A +    L+ G  +HAR+++   
Sbjct: 252 IFSQHGFGVQCLAMF--VEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEH 309

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             D+     L+DMY KCG +D A  +F  +     + WN++I+     G G+ AL  F Q
Sbjct: 310 SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQ 369

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M    V  D     ++L  CS     S G+   H    + G+         ++ ++ + G
Sbjct: 370 MRRSSVVLDEFILPTILGVCSGPDYASTGE-LLHGYTIKSGMGSSAPVGNAIITMYAKCG 428

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
               A    + MP+R   S W A++ A    G++
Sbjct: 429 DTDKADLVFRLMPLRNTIS-WTAMITAFSRSGDI 461


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/538 (40%), Positives = 323/538 (60%), Gaps = 2/538 (0%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N LI  Y K G +  A ++FD+M  R+V +WN+++A    S     + GFF  M++ G+Q
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD   L SL    A L D  + R VH +++R G    D+ +G+++  MY + G +    A
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
               LP  +++S NT I+G  QNG A  A+E F +M     +  N  T+VS + + S + 
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG-VEANAVTFVSAVTSCSDLA 181

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL QG +IHA  IK  +   V V T LV MY +CG + D+  +  +   +  V  +A+IS
Sbjct: 182 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 241

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +G HG G KA+  F+QM+  G  P+ +TF++LL ACSHSGL  EG   F +M + +G++
Sbjct: 242 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 301

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P +KHY C+VDL GR+G L  A + I +MPV+PD  IW  LL AC+     ++    ++R
Sbjct: 302 PSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAER 361

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           + E+D  +   YVL+SNI A   +WE V +VR   R++ ++K PG S +E+  ++  F T
Sbjct: 362 VIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCT 421

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
           G+ +H +  +I + L  +  +++  GY PD S V  D+E++EKE  L  HSE+LAIAF  
Sbjct: 422 GDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAF 481

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +S P   PI++ KNLRVC DCH   K +S++  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 482 LSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 188/371 (50%), Gaps = 13/371 (3%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W++ +       Y + G    ARKLFD+MP R+  +WNAM++G   SG   E+L     M
Sbjct: 3   WNILIGG-----YVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAM 57

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R EG+  D   + S+   CA   +++SG  +H Y+V+ GL+ ++ V ++L +MY + G +
Sbjct: 58  RREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFL 117

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
           R        +   ++VS N+ I+   Q+ D   A  FF  M+ AG++ + +T VS  +  
Sbjct: 118 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 177

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
           + L      + +H   ++ G  ++ V+ +  ++V MY++ G +  +  V       D++ 
Sbjct: 178 SDLAALAQGQQIHALAIKTG--VDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 235

Query: 300 WNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
            + +I+ Y  +G   +A+ +F QMM    E  PN+ T++++L A SH G   +G+     
Sbjct: 236 CSAMISAYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHSGLKDEGMNCFEL 293

Query: 359 VIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           + K   L   V   TC+VD+ G+ G +++A  L   +P +   V W  ++S      + D
Sbjct: 294 MTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFD 353

Query: 417 KALNFFRQMLD 427
            A     ++++
Sbjct: 354 MAERIAERVIE 364



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 4/300 (1%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAA 67
           L+E    F+      G++PD Y    + + C   R++V G+++H  V++ G + D+ V +
Sbjct: 46  LNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGS 105

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           SL HMY R G           +P  +  S N  ISG  Q+G+A  AL+    MR  GV  
Sbjct: 106 SLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEA 165

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           + +T  S +  C+    +  G  IH   +K G++  + V  +L++MY++ G +  + RV 
Sbjct: 166 NAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVC 225

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
            +    D+V  +++I+AY        A G F  M  AG +P+ +T ++L    +      
Sbjct: 226 LEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKD 285

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG 306
              +    + +       V     +VD+  + G +N A  +   +PV+ D + W TL++ 
Sbjct: 286 EGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA 345


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/691 (35%), Positives = 398/691 (57%), Gaps = 21/691 (3%)

Query: 22  TLTSGLRPDFYTFPP----VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           TL+  L+P     PP     L+ C    +  ++H   +K        V++ LL +Y    
Sbjct: 5   TLSHSLQP---FLPPNLHFPLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPR 61

Query: 78  LANV--ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           + N+  A  LFD +      SWN +I  Y ++  + +A+ +  ++  + V  D  T+  +
Sbjct: 62  INNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP-DSFTLPCV 120

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  CAR   +  G  IH  ++K G   + FV ++L++MY+K G +    +VFD+M ++DV
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDV 180

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSWNS+I  Y +  +   A   F  M +     D  +   L   +++      +R V   
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDR 236

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +  R     + +  NA+++ Y K G  N+A  +F+ +P + +++WN++ITGY +N   ++
Sbjct: 237 MPIR-----NSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+++F++M    +I+PN  T +  + A S + +L  G  +H+ ++K+    D  + T L+
Sbjct: 292 ALKLFEVMLR-EDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLI 350

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           +MY KCG +  A+ +F  +P+     W ++I   G+HG  ++ L  F +M   G++P  I
Sbjct: 351 EMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAI 410

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           TF+ +L ACSH+G   +  RYF MM  ++GIKP ++HYGC++D+  RAGHL  A + I+ 
Sbjct: 411 TFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIER 470

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MP++ +  IW +LL   R HGN+ +G  A+  L ++  +  G YV++SN+YA  G WE V
Sbjct: 471 MPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKV 530

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
            +VR + + +G+KK PG SSIE    +  F  G+++HP+ E+IY +L  +  K+   G++
Sbjct: 531 RQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHI 590

Query: 616 PDKSFVLQDVEED-EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
           PD + VL  +EED EKE  L +HSERLAIAFG+++    SPI+I KNLR+C DCH  TK 
Sbjct: 591 PDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKL 650

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +S I  REII+RD +RFHHFK G CSC D+W
Sbjct: 651 LSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 149/316 (47%), Gaps = 15/316 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQF----TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLK 56
           +I  Y RCG +  A++ F +     + +  +  D  +    L+A R++ D   I  SV  
Sbjct: 186 LIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSV-- 243

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W+     ++++ Y + G +N A++LFD MP R   +WN+MI+GY ++    +AL +
Sbjct: 244 ---SWN-----AMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKL 295

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            + M  E +S +  T+   +   +   ++ +G  +H YIVK G + +  +   LI MY+K
Sbjct: 296 FEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSK 355

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G ++ ALRVF  + ++ +  W S+I               F  M + G++P  +T + +
Sbjct: 356 CGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGV 415

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            +  +      ++      +         +     ++D+  + G +  A    E +P+K 
Sbjct: 416 LNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKA 475

Query: 296 DVISWNTLITGYAQNG 311
           + + W +L++G  ++G
Sbjct: 476 NKVIWTSLLSGSRKHG 491


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/723 (33%), Positives = 408/723 (56%), Gaps = 25/723 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI+  VR GR  +A++ + +     G+  D +    ++ AC   + L +G+++H  ++  
Sbjct: 1   MIAACVREGRPLQALELWGEME-ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIIT 59

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+ +  +LL MY + G  + A+++F+ M ++D  +W+++I+ Y ++G    A+ + 
Sbjct: 60  GFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLY 119

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EGV  + +T A  L  CA    +  G  IH  I+   +  +  + ++L+NMY K 
Sbjct: 120 RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLVSL 236
             M  A +VF+ M  R+V S+ ++I+AY Q+ +   A   F+ M +   I+P+  T  ++
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              V  L +    R VH  +  RG F  +V++ NA+V MY K G    A  VF+ +  ++
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRG-FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARN 298

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           VISW ++I  YAQ+G   EA+ +F+ M+    + P+  ++ S L A + +GAL +G +IH
Sbjct: 299 VISWTSMIAAYAQHGNPQEALNLFKRMD----VEPSGVSFSSALNACALLGALDEGREIH 354

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
            RV++  L     + T L+ MY +CG +DDA  +F ++    +   NA+I+    HG+  
Sbjct: 355 HRVVEANLA-SPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKK 413

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +AL  +R+M  EG+  D ITFVS+L ACSH+ LV++ + +   +  + G+ P ++HY CM
Sbjct: 414 QALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCM 473

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VD+ GR+G LG A   ++ MP + DA  W  LL  C+ HG+++ G  A+ ++FE+     
Sbjct: 474 VDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAET 533

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK-- 594
             YV +SN+YA   +++    VR    +RG+ +    S IE++N++ +F +G R   +  
Sbjct: 534 LPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEG 593

Query: 595 -----YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE----EDEKEHILTSHSERLAIAF 645
                 E++   L  L   MK  GYVPD   V  + +    E+EK+  L  HSERLAIA+
Sbjct: 594 HDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAY 653

Query: 646 GIISS--PPKS-PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           G+I++  P  S P+++  + RVC  CH+  K +S ITE+ I VRD +RFHHF+ G CSCG
Sbjct: 654 GLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCG 713

Query: 703 DYW 705
           D+W
Sbjct: 714 DHW 716


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/519 (40%), Positives = 322/519 (62%), Gaps = 5/519 (0%)

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA--GIQPDLLTLVSLTSIVAQLNDCR 247
           M ERD+V+WNS+I+ Y             + M ++  G +P+ +T +S+ S      +  
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
               +HG +M+ G  +E+V + NA++++Y K G + S+C +FE L VK+++SWNT+I  +
Sbjct: 61  EGVCIHGLVMKSG-VLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIH 119

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            QNGLA E +  F M      + P+Q T++++L     +G +R    IH  ++      +
Sbjct: 120 LQNGLAEEGLAYFNMSRWVG-LKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNAN 178

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             + T L+D+Y K GR++D+ ++F ++    S+ W A+++ +  HG G  A+  F  M+ 
Sbjct: 179 TCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVH 238

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
            G+ PDH+TF  LL ACSHSGLV EG+ YF  M + + I+P L HY CMVDL GR+G L 
Sbjct: 239 YGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQ 298

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547
            A+  I+ MP+ P + +WGALLGACR++ + +LG  A+ RLFE++  +   Y+++SNIY+
Sbjct: 299 DAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYS 358

Query: 548 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTA 607
             G W+    +R+L + +GL +  G+S IE  NK+  F  G+ +HP+ EKI  +L+ +  
Sbjct: 359 ASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRK 418

Query: 608 KMKS-LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
           KMKS LG+     FVL DV+ED KE ++  HSE++A+AFG++   P  PI I KNLR+CG
Sbjct: 419 KMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICG 478

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K IS I +R II+RDS RFHHF +G CSC DYW
Sbjct: 479 DCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 190/381 (49%), Gaps = 11/381 (2%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNIL 146
           MP RD  +WN++ISGY   G   +  ++L  M    V   P  +T  S++  C    N  
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G+ IH  ++K G+   + V N L+N+Y K G +  + ++F+ +  +++VSWN++I  + 
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           Q+        +F   +  G++PD  T +++  +   +   R S+ +HG IM  G F  + 
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCG-FNANT 179

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            I  A++D+YAKLG +  +  VF  +   D ++W  ++  YA +G   +AI+ F++M   
Sbjct: 180 CITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHY 239

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC---FDVFVATCLVDMYGKCGR 383
             ++P+  T+  +L A SH G + +G      + K        D +  +C+VD+ G+ G 
Sbjct: 240 G-LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHY--SCMVDLMGRSGL 296

Query: 384 IDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
           + DA  L  ++P   SS  W A++    ++          +++ +   R D   ++ L  
Sbjct: 297 LQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPR-DGRNYIMLSN 355

Query: 443 ACSHSGLVSEGQRYFHMMQEE 463
             S SGL  +  R  ++M+++
Sbjct: 356 IYSASGLWKDASRIRNLMKQK 376



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 161/364 (44%), Gaps = 15/364 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLK 56
           +IS Y   G L +  +   +   +  G RP+  TF  ++ AC    N  +G  IH  V+K
Sbjct: 12  LISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMK 71

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            G   +V V  +L+++Y + G    + KLF+D+ V++  SWN MI  + Q+G A E L  
Sbjct: 72  SGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAY 131

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +  R  G+  D  T  ++L VC     +     IH  I+  G   N  ++  L+++YAK
Sbjct: 132 FNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAK 191

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  +  VF ++   D ++W +++AAY        A   F  M   G+ PD +T   L
Sbjct: 192 LGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHL 251

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +  +        R     + +R      +   + +VD+  + G++  A  + + +P++ 
Sbjct: 252 LNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEP 311

Query: 297 VIS-WNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQ 351
               W  L+     Y    L ++A       +   E+ P  G  Y+ +   YS  G  + 
Sbjct: 312 SSGVWGALLGACRVYKDTQLGTKA------AKRLFELEPRDGRNYIMLSNIYSASGLWKD 365

Query: 352 GIKI 355
             +I
Sbjct: 366 ASRI 369


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 367/625 (58%), Gaps = 18/625 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M++ YV+ G    A   F +   T    P+  TF  VL  C + +    G ++H  V+  
Sbjct: 219 MLNGYVKNGDWDNATGVFMEMRRTE-TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS 277

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D  VA +LL MY + G    AR+LFD MP  D  +WN MISGY Q+G   EA  + 
Sbjct: 278 GLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLF 337

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM    +  D IT +S LP+ +    +  G  IH YI+++G+  ++F+ + LI++Y K 
Sbjct: 338 HEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKC 397

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++FDQ    D+V   ++I+ Y  +     A   F  + Q  ++ + +TL S+ 
Sbjct: 398 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL 457

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      + +HG I++ G       +G+A++DMYAK G ++ A   F G+  KD 
Sbjct: 458 PACAGLAALTLGKELHGHILKNG-HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDA 516

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMME------ECNEINPNQGTYVSILPAYSHVGALRQ 351
           + WN++IT  +QNG   EAI++F+ M       +C  I+       + L A +++ AL  
Sbjct: 517 VCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS-------AALSACANLPALHY 569

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IHA +++     D+F  + L+DMY KCG +D A  +F  +   + V WN+II+ +G 
Sbjct: 570 GKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGN 629

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG+   +LN F  ML +G++PDH+TF+++++AC H+G V EG  YF  M EE GI   ++
Sbjct: 630 HGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARME 689

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY CMVDLFGRAG L  A   I +MP  PDA +WG LLGACR+HGN+EL  VAS  LF++
Sbjct: 690 HYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDL 749

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           D +N GYYVL+SN++AN G+WE V ++RSL ++RG++K PG S I+VNN   +F   +R+
Sbjct: 750 DPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRS 809

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVP 616
           HP+  +IY  L+NL  +++  GYVP
Sbjct: 810 HPQSSQIYLLLKNLFLELRKEGYVP 834



 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 278/522 (53%), Gaps = 8/522 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  +   G+   A+  FY   L  G  PD YTFP V+KAC  L     G+ +H  +  +
Sbjct: 118 MIRGFTMMGQFDFAL-LFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFM 176

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DVFV +SL+  Y   G  + AR LFD MP +D   WN M++GY ++G+   A  + 
Sbjct: 177 GFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVF 236

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EMR    + + +T A +L VCA    I  G  +H  +V  GLE +  V+N L+ MYAK 
Sbjct: 237 MEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKC 296

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A R+FD M + D+V+WN +I+ Y Q+     A   F  M  A ++PD +T  S  
Sbjct: 297 GHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            ++++    R  + +H +I+R G  + DV + +A++D+Y K   +  A  +F+     D+
Sbjct: 357 PLLSEGATLRQGKEIHCYIIRNGVSL-DVFLKSALIDIYFKCRDVEMARKIFDQRTPVDI 415

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +    +I+GY  NG+ + A+E+F+ + +   +  N  T  S+LPA + + AL  G ++H 
Sbjct: 416 VVCTAMISGYVLNGMNNNALEIFRWLLQ-ERMRANSVTLASVLPACAGLAALTLGKELHG 474

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            ++KN      +V + ++DMY KCGR+D A   F  +    +V WN++I+    +G+ ++
Sbjct: 475 HILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEE 534

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ FRQM   G + D ++  + L+AC++   +  G+   H        +  L     ++
Sbjct: 535 AIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKE-IHAFMMRGAFRSDLFAESALI 593

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           D++ + G+L +A      M  + + S W +++ A   HG ++
Sbjct: 594 DMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNHGRLK 634



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 245/487 (50%), Gaps = 9/487 (1%)

Query: 37  VLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+ C +   L  G++ H  +L  G  ++  +   LL MY   G    A+ +F  + +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S  WN MI G+   G    AL    +M   G   D  T   ++  C   +++  G ++H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            I   G E ++FV ++LI  Y++ G +  A  +FD+M  +D V WN ++  Y ++ D   
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A G F  M++    P+ +T   + S+ A          +HG ++  G  M D  + N ++
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEM-DSPVANTLL 290

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MYAK G +  A  +F+ +P  D+++WN +I+GY QNG   EA  +F  M     + P+ 
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA-RMKPDS 349

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T+ S LP  S    LRQG +IH  +I+N +  DVF+ + L+D+Y KC  ++ A  +F Q
Sbjct: 350 ITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQ 409

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
                 V   A+IS + ++G  + AL  FR +L E +R + +T  S+L AC+    ++ G
Sbjct: 410 RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLG 469

Query: 454 QR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           +  + H+++   G   ++     ++D++ + G L +AH     +  + DA  W +++ +C
Sbjct: 470 KELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSC 526

Query: 513 RIHGNME 519
             +G  E
Sbjct: 527 SQNGKPE 533



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 172/369 (46%), Gaps = 6/369 (1%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           + SIL  C     +  G   H  ++ +G+ +N  +   L+ MY   G    A  +F Q+ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
                 WN +I  +        A  F+  M   G  PD  T   +      LN     R 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH  I   G F  DV +G++++  Y++ G I+ A  +F+ +P KD + WN ++ GY +NG
Sbjct: 169 VHDKIQFMG-FELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               A  VF  M    E NPN  T+  +L   +    +  G ++H  V+ + L  D  VA
Sbjct: 228 DWDNATGVFMEMRR-TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA 286

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             L+ MY KCG + DA  LF  +P++  V WN +IS +  +G  D+A   F +M+   ++
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMK 346

Query: 432 PDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           PD ITF S L   S    + +G+  + ++++    +   LK    ++D++ +   + MA 
Sbjct: 347 PDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK--SALIDIYFKCRDVEMAR 404

Query: 491 N-FIQNMPV 498
             F Q  PV
Sbjct: 405 KIFDQRTPV 413



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR 396
           VSIL   +    L QG + HA+++ N + ++  + T L+ MY  CG   DA ++FYQ+  
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
             S PWN +I    + GQ D AL F+ +ML  G  PD  TF  ++ AC     V+ G R 
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG-RV 168

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            H   +  G +  +     ++  +   G +  A      MP + D  +W  +L     +G
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVMLNGYVKNG 227

Query: 517 NME--LGAVASDRLFEVDSENVGYYVLMS 543
           + +   G     R  E +  +V +  ++S
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLS 256


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/675 (36%), Positives = 371/675 (54%), Gaps = 15/675 (2%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  G ++H +++KLGF  D  +  +L+ MY + G  ++A ++FD MP R+  SW A++ 
Sbjct: 19  SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 78

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           G+   G A E L +  EMR  G S +  T+++ L  C       +G+ IH   V+ G E 
Sbjct: 79  GFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEG 136

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +  V+N+L+ MY+K      A RVFD +  R++ +WNS+I+ Y  +     +   F  MQ
Sbjct: 137 HDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQ 196

Query: 223 QA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF-MEDVIIGNAVVDMYAKLG 280
           +    QPD  T  SL    + L   R    VH  +  RG     + I+  A++D+Y K  
Sbjct: 197 RRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCH 256

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +  A  VF+GL  ++ I W T+I G+AQ G   EA+ +F+       +  +     S++
Sbjct: 257 RLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVV 315

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
             ++    + QG ++H    K     DV VA  LVDMY KCG   +A   F ++P  + V
Sbjct: 316 AVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVV 375

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W A+I+  G HG G +A++ F +M +EGV  D + +++LL+ACSHSGLV E +RYF  +
Sbjct: 376 SWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRI 435

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
            ++  ++P  +HY CMVDL GRAG L  A   I +MP+ P   +W  LL ACR+H ++ +
Sbjct: 436 CQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAV 495

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G    D L  VD +N   YV++SNI A  G+W     +R   R +GL+K  G S  EV+ 
Sbjct: 496 GREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDK 555

Query: 581 KVDIFY-TGNRTHPKYEKIYDELRNLTAKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHS 638
           +V  FY  G+  HP+   I   LR + A+M+  LGY  D    L DV+E+ +   L  HS
Sbjct: 556 EVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDEESRVESLREHS 615

Query: 639 ERLAIAFGIISSPPKSP--------IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           ERLA+   ++               ++++KNLRVCGDCH + K +S +  R ++VRD+NR
Sbjct: 616 ERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANR 675

Query: 691 FHHFKDGICSCGDYW 705
           FH F++G CSC DYW
Sbjct: 676 FHRFQNGACSCRDYW 690



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 220/421 (52%), Gaps = 19/421 (4%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L   AR  ++  G+ +H  ++K G   +  ++NNLI+MYAK G +  A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER+VVSW +++  +    +       F  M+ +G  P+  TL +  ++ A     R    
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSA--TLKACGGGTRAGVQ 124

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG  +R G+   DV + N++V MY+K      A  VF+ +P +++ +WN++I+GYA  G
Sbjct: 125 IHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVF 369
              +++ VF+ M+  ++  P++ T+ S+L A S +GA R+G ++HA +    +    +  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +A  L+D+Y KC R+  AM +F  + R +++ W  +I  H   GQ  +A+  FR+    G
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 430 VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           VR D     S++   +   LV +G Q + +  +   G+   + +   +VD++ + G  G 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGE 361

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE------VDSENVGYYVLM 542
           A    + MP R   S W A++     HG+   G  A D LFE      V+++ V Y  L+
Sbjct: 362 AGRRFREMPARNVVS-WTAMINGVGKHGH---GREAID-LFEEMQEEGVEADEVAYLALL 416

Query: 543 S 543
           S
Sbjct: 417 S 417



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 20/367 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS Y   G+  +++  F +       +PD +TF  +LKAC  L    +G ++H ++   
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR 234

Query: 58  GFE--WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G     +  +A +LL +Y +     VA ++FD +  R++  W  +I G+ Q G   EA+ 
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMC 294

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +       GV  D   ++S++ V A    +  G  +H Y  K     ++ V+N+L++MY 
Sbjct: 295 LFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYL 354

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD---LLT 232
           K G+   A R F +M  R+VVSW ++I    +      A   F  MQ+ G++ D    L 
Sbjct: 355 KCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLA 414

Query: 233 LVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           L+S  S    +++CR   SR      MR             +VD+  + G +  A  +  
Sbjct: 415 LLSACSHSGLVDECRRYFSRICQDRRMR-----PKAEHYACMVDLLGRAGELREAKELIL 469

Query: 291 GLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
            +P++  +  W TL++    +   +   EV  ++   +  NP    YV +    +  G  
Sbjct: 470 SMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPV--NYVMLSNILAEAGEW 527

Query: 350 R--QGIK 354
           R  QGI+
Sbjct: 528 RECQGIR 534


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 349/590 (59%), Gaps = 11/590 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M L G S       + +  C     +  G  +H  ++       +F+   L+ MY + G 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A  V D+M ER VVSW ++I+ Y Q+   + A   F  M +AG  P+  TL ++ + 
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            +        + VH  +++   F   + +G++++DMYAK   I  A  VF+ LP +DV+S
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTN-FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVS 179

Query: 300 WNTLITGYAQNGLASEAIEVFQMME----ECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              +I+GYAQ GL  EA+++F+ +     +CN +     T+ +++ A S + +L  G ++
Sbjct: 180 CTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHV-----TFTTLVTALSGLASLDYGKQV 234

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           HA +++  L F V +   L+DMY KCG++  +  +F  +   S V WNA++  +G HG G
Sbjct: 235 HALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLG 294

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
            + ++ F+ +  E V+PD +T +++L+ CSH GLV EG   F  + +E     H  HYGC
Sbjct: 295 HEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGC 353

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           ++DL GR+G L  A N I+NMP     SIWG+LLGACR+H N+ +G + + +L E++ EN
Sbjct: 354 IIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN 413

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKY 595
            G YV++SNIYA  G W+ V +VR L  ++ + K PG S I ++  +  F++  R HP  
Sbjct: 414 AGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSK 473

Query: 596 EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           + I  +++ +   +K+ G+VPD S VL DV++++KE +L  HSE+LAI FG++++PP   
Sbjct: 474 KDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLT 533

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLR+C DCHN+ KF+S++ EREI +RD NRFH    G C+CGDYW
Sbjct: 534 IRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 212/395 (53%), Gaps = 12/395 (3%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G    F+ +   + AC   R L +G+++H  ++   +   VF+   L+ MY R G  + A
Sbjct: 5   GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDA 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R + D MP R   SW  MISGY Q+   VEALD+  +M   G   +  T+A++L  C+  
Sbjct: 65  RNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGP 124

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I  G  +H  +VK   E ++FV ++L++MYAK   ++ A RVFD + ERDVVS  +II
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAII 184

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG-- 260
           + Y Q      A   F  +   G+Q + +T  +L + ++ L      + VH  I+R+   
Sbjct: 185 SGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELP 244

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           +F   V + N+++DMY+K G +  +  VF+ +  + V+SWN ++ GY ++GL  E I +F
Sbjct: 245 FF---VALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 301

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYG 379
           + + +  E+ P+  T +++L   SH G + +G+ I   V+K            C++D+ G
Sbjct: 302 KDLHK--EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           + GR++ A++L   +P  S+   W +++    +H 
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHA 394


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/638 (37%), Positives = 367/638 (57%), Gaps = 19/638 (2%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y   G+ N AR++FD MP R+  SW AM+ GY + G   EA  +  +M  + V   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSW 225

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  +L    R D           +     E ++    N+I  Y + G +  A  +FD
Sbjct: 226 TVMLGGLLQE-GRIDEACR-------LFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFD 277

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M  R+VVSW ++I  Y Q+     A   F  M +          VS T+++    +C  
Sbjct: 278 EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK-------NEVSWTAMLKGYTNC-- 328

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R      +     ++ V+  NA++  + + G +  A  VF+ +  KD  +W+ +I  Y 
Sbjct: 329 GRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + GL  +A+E+F+MM+    I PN  + +S+L   + +  L  G +IHA+++++    DV
Sbjct: 389 RKGLELDALELFRMMQR-EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +VA+ L+ MY KCG +  A  +F +      V WN+II+ +  HG G +AL  F  M   
Sbjct: 448 YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFS 507

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+ PD +TFV +L+ACS++G V +G   F+ M+ ++ ++  ++HY CMVDL GRAG L  
Sbjct: 508 GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNE 567

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A + I+ MP+  DA IWGALLGACR H  ++L  VA+ +L  ++ +N G ++L+SNIYA+
Sbjct: 568 AMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT-HPKYEKIYDELRNLTA 607
            G+W+ V E+R   RDR + K PG S I V  KV  F  G+ + HP++ +I   L  L+ 
Sbjct: 628 QGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSG 687

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            ++  GY PD+SFVL DV+E+EK   L  HSE+LA+A+G++  P   PI++ KNLRVCGD
Sbjct: 688 LLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGD 747

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH   K I+++T REII+RD+NRFHHFKDG CSC DYW
Sbjct: 748 CHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 218/421 (51%), Gaps = 20/421 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK-KIHCSVLKLGF 59
           M+  YV+ G +SEA   F+Q        P+       +     L +G+    C +  +  
Sbjct: 197 MVRGYVKEGMISEAETLFWQM-------PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP 249

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E DV    +++  YC+ G    AR LFD+MP R+  SW  MI+GY Q+   V+    L E
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN-QQVDIARKLFE 308

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           +  E   +    +      C R D   +  L +   +K     ++   N +I  + + G 
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDE--ASELFNAMPIK-----SVVACNAMILCFGQNGE 361

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VFDQM E+D  +W+++I  YE+    + A   F  MQ+ GI+P+  +L+S+ S+
Sbjct: 362 VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A L +  + R +H  ++ R  F  DV + + ++ MY K G +  A  VF+   VKDV+ 
Sbjct: 422 CAGLANLDHGREIHAQLV-RSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HAR 358
           WN++ITGYAQ+GL  EA+ VF  M   + I P+  T+V +L A S+ G +++G++I ++ 
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDM-HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
             K  +   +    C+VD+ G+ G++++AM L  ++P  + ++ W A++     H + D 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 418 A 418
           A
Sbjct: 600 A 600



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 207/452 (45%), Gaps = 65/452 (14%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           SL+  Y R G    AR +FD+M  ++  SWN++++GY Q+    EA ++ D+M       
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS------ 156

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
                                            E N    N L++ Y   GM+  A  VF
Sbjct: 157 ---------------------------------ERNTISWNGLVSGYINNGMINEAREVF 183

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ-LNDC 246
           D+M ER+VVSW +++  Y +      A   F  M +  +       VS T ++   L + 
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV-------VSWTVMLGGLLQEG 236

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           R   +   F M      +DV+    ++  Y ++G +  A  +F+ +P ++V+SW T+ITG
Sbjct: 237 RIDEACRLFDMMPE---KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITG 293

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLC 365
           Y QN     A ++F++M E NE+     ++ ++L  Y++ G L +  ++ +A  IK+   
Sbjct: 294 YVQNQQVDIARKLFEVMPEKNEV-----SWTAMLKGYTNCGRLDEASELFNAMPIKS--- 345

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             V     ++  +G+ G +  A  +F Q+       W+A+I  +   G    AL  FR M
Sbjct: 346 --VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
             EG+RP+  + +S+L+ C+    +  G+  +  +++ +F +  ++     ++ ++ + G
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCG 461

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +L  A        V+ D  +W +++     HG
Sbjct: 462 NLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 163/360 (45%), Gaps = 57/360 (15%)

Query: 144 NILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           ++ SGL+    ++      N  +S N+LI  Y++ G +  A  VFD+M +++++SWNSI+
Sbjct: 77  SMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIV 136

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y Q+  P  A   F  M +     + ++   L S          +R V   +  R   
Sbjct: 137 AGYFQNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEAREVFDRMPER--- 189

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +V+   A+V  Y K G+I+ A  +F  +P K+V+SW  ++ G  Q G   EA  +F M
Sbjct: 190 --NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI------KNCLCFDVFVA----- 371
           M E + +     T  +++  Y  VG L     + AR++      +N + +   +      
Sbjct: 248 MPEKDVV-----TRTNMIGGYCQVGRL-----VEARMLFDEMPRRNVVSWTTMITGYVQN 297

Query: 372 ---------------------TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
                                T ++  Y  CGR+D+A  LF  +P  S V  NA+I C G
Sbjct: 298 QQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFG 357

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            +G+  KA    RQ+ D+    D  T+ +++      GL  +    F MMQ E GI+P+ 
Sbjct: 358 QNGEVPKA----RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE-GIRPNF 412



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 19/244 (7%)

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +I  N+++  Y++LG I  A  VF+ +  K++ISWN+++ GY QN    EA  +F  M E
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            N I+ N      ++  Y + G + +  ++  R+ +     +V   T +V  Y K G I 
Sbjct: 158 RNTISWN-----GLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRGYVKEGMIS 208

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A +LF+Q+P  + V W  ++      G+ D+A   F  M ++    D +T  +++    
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYC 264

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
             G + E +  F  M      + ++  +  M+  + +   + +A    + MP + + S W
Sbjct: 265 QVGRLVEARMLFDEMP-----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-W 318

Query: 506 GALL 509
            A+L
Sbjct: 319 TAML 322


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/638 (37%), Positives = 367/638 (57%), Gaps = 19/638 (2%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y   G+ N AR++FD MP R+  SW AM+ GY + G   EA  +  +M  + V   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSW 225

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  +L    R D           +     E ++    N+I  Y + G +  A  +FD
Sbjct: 226 TVMLGGLLQE-GRIDEACR-------LFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFD 277

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M  R+VVSW ++I  Y Q+     A   F  M +          VS T+++    +C  
Sbjct: 278 EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK-------NEVSWTAMLKGYTNC-- 328

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R      +     ++ V+  NA++  + + G +  A  VF+ +  KD  +W+ +I  Y 
Sbjct: 329 GRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + GL  +A+E+F+MM+    I PN  + +S+L   + +  L  G +IHA+++++    DV
Sbjct: 389 RKGLELDALELFRMMQR-EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +VA+ L+ MY KCG +  A  +F +      V WN+II+ +  HG G +AL  F  M   
Sbjct: 448 YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFS 507

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           G+ PD +TFV +L+ACS++G V +G   F+ M+ ++ ++  ++HY CMVDL GRAG L  
Sbjct: 508 GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNE 567

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A + I+ MP+  DA IWGALLGACR H  ++L  VA+ +L  ++ +N G ++L+SNIYA+
Sbjct: 568 AMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT-HPKYEKIYDELRNLTA 607
            G+W+ V E+R   RDR + K PG S I V  KV  F  G+ + HP++ +I   L  L+ 
Sbjct: 628 QGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSG 687

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            ++  GY PD+SFVL DV+E+EK   L  HSE+LA+A+G++  P   PI++ KNLRVCGD
Sbjct: 688 LLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGD 747

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH   K I+++T REII+RD+NRFHHFKDG CSC DYW
Sbjct: 748 CHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 218/421 (51%), Gaps = 20/421 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK-KIHCSVLKLGF 59
           M+  YV+ G +SEA   F+Q        P+       +     L +G+    C +  +  
Sbjct: 197 MVRGYVKEGMISEAETLFWQM-------PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP 249

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E DV    +++  YC+ G    AR LFD+MP R+  SW  MI+GY Q+   V+    L E
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN-QQVDIARKLFE 308

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           +  E   +    +      C R D   +  L +   +K     ++   N +I  + + G 
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDE--ASELFNAMPIK-----SVVACNAMILCFGQNGE 361

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A +VFDQM E+D  +W+++I  YE+    + A   F  MQ+ GI+P+  +L+S+ S+
Sbjct: 362 VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A L +  + R +H  ++ R  F  DV + + ++ MY K G +  A  VF+   VKDV+ 
Sbjct: 422 CAGLANLDHGREIHAQLV-RSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HAR 358
           WN++ITGYAQ+GL  EA+ VF  M   + I P+  T+V +L A S+ G +++G++I ++ 
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDM-HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
             K  +   +    C+VD+ G+ G++++AM L  ++P  + ++ W A++     H + D 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 418 A 418
           A
Sbjct: 600 A 600



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 207/452 (45%), Gaps = 65/452 (14%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           SL+  Y R G    AR +FD+M  ++  SWN++++GY Q+    EA ++ D+M       
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS------ 156

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
                                            E N    N L++ Y   GM+  A  VF
Sbjct: 157 ---------------------------------ERNTISWNGLVSGYINNGMINEAREVF 183

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ-LNDC 246
           D+M ER+VVSW +++  Y +      A   F  M +  +       VS T ++   L + 
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV-------VSWTVMLGGLLQEG 236

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           R   +   F M      +DV+    ++  Y ++G +  A  +F+ +P ++V+SW T+ITG
Sbjct: 237 RIDEACRLFDMMPE---KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITG 293

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLC 365
           Y QN     A ++F++M E NE+     ++ ++L  Y++ G L +  ++ +A  IK+   
Sbjct: 294 YVQNQQVDIARKLFEVMPEKNEV-----SWTAMLKGYTNCGRLDEASELFNAMPIKS--- 345

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
             V     ++  +G+ G +  A  +F Q+       W+A+I  +   G    AL  FR M
Sbjct: 346 --VVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
             EG+RP+  + +S+L+ C+    +  G+  +  +++ +F +  ++     ++ ++ + G
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCG 461

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +L  A        V+ D  +W +++     HG
Sbjct: 462 NLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 163/360 (45%), Gaps = 57/360 (15%)

Query: 144 NILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           ++ SGL+    ++      N  +S N+LI  Y++ G +  A  VFD+M +++++SWNSI+
Sbjct: 77  SMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIV 136

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y Q+  P  A   F  M +     + ++   L S          +R V   +  R   
Sbjct: 137 AGYFQNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEAREVFDRMPER--- 189

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             +V+   A+V  Y K G+I+ A  +F  +P K+V+SW  ++ G  Q G   EA  +F M
Sbjct: 190 --NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI------KNCLCFDVFVA----- 371
           M E + +     T  +++  Y  VG L     + AR++      +N + +   +      
Sbjct: 248 MPEKDVV-----TRTNMIGGYCQVGRL-----VEARMLFDEMPRRNVVSWTTMITGYVQN 297

Query: 372 ---------------------TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
                                T ++  Y  CGR+D+A  LF  +P  S V  NA+I C G
Sbjct: 298 QQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFG 357

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            +G+  KA    RQ+ D+    D  T+ +++      GL  +    F MMQ E GI+P+ 
Sbjct: 358 QNGEVPKA----RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE-GIRPNF 412



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 19/244 (7%)

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           +I  N+++  Y++LG I  A  VF+ +  K++ISWN+++ GY QN    EA  +F  M E
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            N I+ N      ++  Y + G + +  ++  R+ +     +V   T +V  Y K G I 
Sbjct: 158 RNTISWN-----GLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRGYVKEGMIS 208

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           +A +LF+Q+P  + V W  ++      G+ D+A   F  M ++    D +T  +++    
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYC 264

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
             G + E +  F  M      + ++  +  M+  + +   + +A    + MP + + S W
Sbjct: 265 QVGRLVEARMLFDEMP-----RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-W 318

Query: 506 GALL 509
            A+L
Sbjct: 319 TAML 322


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/662 (38%), Positives = 372/662 (56%), Gaps = 62/662 (9%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRD 93
           +L  C++  + K+IH  ++K G     F  + L+  +C    FG  + A  LF+ +   +
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPN 96

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
              WN MI G   S + V A+D    M L GV  +  T   +L  CA+      G  IH 
Sbjct: 97  QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHA------------------------------ 183
           +++K GLE + FV  +LINMYA+ G + +A                              
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD 216

Query: 184 -LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
             R+F+++  RD VSWN++IA Y QS     A  FF  M++A + P+  T+V++ S  AQ
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                    V  +I   G    ++ + NA++DMY+K G ++ A  +FEG+  KD+ISWN 
Sbjct: 277 SGSLELGNWVRSWIEDHG-LGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I GY+      EA+ +F+ M++ N + PN  T+VSILPA +++GAL  G  IHA + K 
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK 394

Query: 363 CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
            L   +  + T L+DMY KCG I+ A  +F  +   S   WNA+IS   +HG  + AL  
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           FRQM DEG  PD ITFV +L+ACSH+GLV  G++ F  M E++ I P L+HYGCM+DL G
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG    A   ++NM ++PD +IWG+LLGACR+HGN+ELG  A+  LFE++ EN G YVL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SNIYA  G+W+ V  +R+   D+G+KK             DI+           K+ DE
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKXQ-----------DIY-----------KMLDE 612

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           +     +    G VPD S VL D++E+ KE  L+ HSE+LAIAFG+IS+ P++ I+I KN
Sbjct: 613 IDQSFGERP--GXVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKN 670

Query: 662 LR 663
           LR
Sbjct: 671 LR 672



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 236/439 (53%), Gaps = 44/439 (10%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLL 70
           A+D FY   L  G+ P+ YTFP +LK+C  +    +GK+IH  VLKLG E D FV  SL+
Sbjct: 116 AID-FYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLI 174

Query: 71  HMYCR---FGLANV----------------------------ARKLFDDMPVRDSGSWNA 99
           +MY +    G A +                            AR+LF+++PVRD+ SWNA
Sbjct: 175 NMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNA 234

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           MI+GY QSG   EAL    EM+   V+ +  T+ ++L  CA+S ++  G  +  +I  HG
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG 294

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           L  NL + N LI+MY+K G +  A  +F+ + E+D++SWN +I  Y   N    A   F 
Sbjct: 295 LGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFR 354

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            MQQ+ ++P+ +T VS+    A L      + +H +I ++   + +  +  +++DMYAK 
Sbjct: 355 KMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKC 414

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I +A  VF G+  K + SWN +I+G A +G A+ A+E+F+ M +     P+  T+V +
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRD-EGFEPDDITFVGV 473

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDMYGKCGRIDDAMSLFYQVP 395
           L A SH G +  G +  + ++++   +D+        C++D+ G+ G  D+A +L   + 
Sbjct: 474 LSACSHAGLVELGRQCFSSMVED---YDISPKLQHYGCMIDLLGRAGLFDEAEALMKNME 530

Query: 396 -RSSSVPWNAIISCHGIHG 413
            +     W +++    +HG
Sbjct: 531 MKPDGAIWGSLLGACRVHG 549


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 344/603 (57%), Gaps = 34/603 (5%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L +CAR  +  +   +H  I+K G + +  +SN L+++Y K G++  AL++FD+M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VSW SI+ A+ ++  P        TM    G+QPD      +    + L   R  + VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
             M   +F +D ++ ++++DMY K G  + A AVF+ +  K+ +SW ++I+GYA++G   
Sbjct: 130 RFML-SFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 315 EAIEVFQMMEECNE----------INPNQGTYV---------------------SILPAY 343
           EA+++F      N           I    G Y                      S++   
Sbjct: 189 EAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           +++  L  G +IH  VI       +F++  LVDMY KC  I  A  +FY++PR   + W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +II     HG+ ++AL  + +M+   ++P+ +TFV LL ACSH+GLVS G+  F  M  +
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           + I P L+HY C++DL  R+GHL  A N +  +P +PD   W +LL AC  H N+E+G  
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
            +DR+ ++  E+   Y+L+SN+YA    W  V +VR L     ++K PG+SSI+      
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQ 488

Query: 584 IFYTGNRT-HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
           +F+ G    HP   +I + L++L A+M+  GYVP+ SFVL D+E+ EKE  L  HSERLA
Sbjct: 489 VFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLA 548

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +A+G++ + P + I+I KNLR+CGDCHN  KFIS I +REI+VRD+ R+HHFK+G CSC 
Sbjct: 549 VAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCN 608

Query: 703 DYW 705
           D+W
Sbjct: 609 DFW 611



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 209/429 (48%), Gaps = 39/429 (9%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           ++H  ++K GF+    ++ +LL +Y + GL   A +LFD+MP RD  SW ++++ + ++ 
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 109 NAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
                L +L+ M   +G+  D    A I+  C+    +  G  +H   +      +  V 
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE--------------------- 206
           ++LI+MY K G    A  VFD ++ ++ VSW S+I+ Y                      
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 207 ----------QSNDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
                     QS   I +   F  M++ GI   D L L S+    A L      + +HG 
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           ++  G F   + I NA+VDMYAK   I +A  +F  +P KDVISW ++I G AQ+G A E
Sbjct: 264 VIALG-FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEE 322

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCL 374
           A+ ++  M   + I PN+ T+V +L A SH G + +G ++   +  +  +   +   TCL
Sbjct: 323 ALTLYDEM-VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCL 381

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           +D+  + G +D+A +L  ++P     P W +++S    H   +  +    ++LD  ++P+
Sbjct: 382 LDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD--LKPE 439

Query: 434 HITFVSLLT 442
             +   LL+
Sbjct: 440 DPSTYILLS 448



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 38/355 (10%)

Query: 26  GLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL+PD + F  +++AC +L     GK++H   +   F  D  V +SL+ MY + G  + A
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDA 159

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL------------------------- 117
           R +FD +  ++S SW +MISGY +SG   EA+D+                          
Sbjct: 160 RAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGI 219

Query: 118 ------DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
                 +EMR EG+ + DP+ ++S++  CA    +  G  IH  ++  G E  LF+SN L
Sbjct: 220 YSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNAL 279

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MYAK   +  A  +F +M  +DV+SW SII    Q      A   +  M  + I+P+ 
Sbjct: 280 VDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNE 339

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T V L    +        R +   +         +     ++D+ ++ G ++ A  + +
Sbjct: 340 VTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLD 399

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
            +P K D  +W +L++   ++      + +   + +    +P+  TY+ +   Y+
Sbjct: 400 KIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPS--TYILLSNVYA 452



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 41/333 (12%)

Query: 234 VSLTSIVAQLNDCRNSRS------VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           ++++  + QL  C   +S      +H  I++ G F +  ++ N ++D+Y K G+I  A  
Sbjct: 1   MNISHFLHQLQLCARRQSASAAGELHSQIIKAG-FDKSSLLSNTLLDVYGKCGLIPQALQ 59

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ +P +D +SW +++T + +  +    + +   M   + + P+   +  I+ A S +G
Sbjct: 60  LFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLG 119

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD--------------------- 386
            LR G ++HAR + +  C D  V + L+DMY KCG+ DD                     
Sbjct: 120 YLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMIS 179

Query: 387 ----------AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PDHI 435
                     AM LF Q P  +   W A+IS     G G  + + F +M  EG+   D +
Sbjct: 180 GYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPL 239

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
              S++  C++  L+  G++  H +    G +  L     +VD++ +   +  A +    
Sbjct: 240 VLSSVVGGCANLALLELGKQ-IHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYR 298

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
           MP R D   W +++     HG  E      D +
Sbjct: 299 MP-RKDVISWTSIIVGTAQHGKAEEALTLYDEM 330



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 36/246 (14%)

Query: 1   MISVYVRCGRLSEAVDCF-------------------------YQFTLTSGLRP------ 29
           MIS Y R GR  EA+D F                         Y F+L + +R       
Sbjct: 177 MISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIV 236

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D      V+  C NL     GK+IH  V+ LGFE  +F++ +L+ MY +      A+ +F
Sbjct: 237 DPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIF 296

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             MP +D  SW ++I G  Q G A EAL + DEM L  +  + +T   +L  C+ +  + 
Sbjct: 297 YRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVS 356

Query: 147 SGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G  L       + +  +L     L+++ ++ G +  A  + D++  + D  +W S+++A
Sbjct: 357 RGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416

Query: 205 YEQSND 210
             + N+
Sbjct: 417 CMRHNN 422


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 293/436 (67%), Gaps = 1/436 (0%)

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            A++  YAK G+I+ A  +F+GL  +D I WN +I GYAQ+GL +E + +F+ M    ++
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNA-KV 68

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN+ T +++L A    GAL  G  +H+ +  N +  +V V T L+DMY KCG ++DA  
Sbjct: 69  RPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F ++     V WN+++  + +HG    AL  F++M   G +P  ITF+ +L ACSH+GL
Sbjct: 129 VFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGL 188

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           VSEG ++F+ M++E+GI+P ++HYGCMV+L GRAG+L  A+  ++NM +  D  +WG LL
Sbjct: 189 VSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLL 248

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
           GACR+HGN+ LG   ++ L   +  N G YVL+SNIYA  G WEGV  VR+L ++ G +K
Sbjct: 249 GACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEK 308

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG SSIEVNNKV  F  G+  HPK  +IY+ L  +   +K+ GY P    VL D+E+ +
Sbjct: 309 EPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQ 368

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE  L  HSE+LA+AFG+I++ P + I+I KNLRVC DCH  TK IS+IT R++++RD N
Sbjct: 369 KERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRN 428

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF +G+CSCGDYW
Sbjct: 429 RFHHFVNGLCSCGDYW 444



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 25/293 (8%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
            +++  Y ++G+ + AR LFD +  RD+  WN MI GY Q G   E L +  +M    V 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
            + +TV ++L  C ++  + +G  +H YI  +G+  N+ V  +LI+MY+K G +  A  V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F+++  +DVV+WNS++  Y        A   F  M   G QP  +T + +      LN C
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV------LNAC 183

Query: 247 RNSRSVHGFIMRRGW----FMED-------VIIGNAVVDMYAKLGIINSACAVFEGLPV- 294
                 H  ++  GW     M+D       V     +V++  + G +  A  + + + + 
Sbjct: 184 S-----HAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEID 238

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +D + W TL+     +G  +   ++ + +   N    N GTYV +   Y+  G
Sbjct: 239 QDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNL--ANSGTYVLLSNIYAAAG 289



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y + G  +E +  F Q  L + +RP+  T   VL AC     L  G+ +H  +   
Sbjct: 43  MIDGYAQHGLPNEGLLLFRQM-LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN 101

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   +V V  SL+ MY + G    AR +F+ +  +D  +WN+M+ GY   G + +AL + 
Sbjct: 102 GIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLF 161

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
            EM + G     IT   +L  C+ +  +  G     Y +K  +G+E  +     ++N+  
Sbjct: 162 KEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKF-FYSMKDEYGIEPKVEHYGCMVNLLG 220

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A  +   M +++D V W +++ A
Sbjct: 221 RAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/659 (35%), Positives = 372/659 (56%), Gaps = 4/659 (0%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K+IH S++      D F+   LL     F     +  LF      +   +N++I+G+  +
Sbjct: 30  KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               E LD+   +R  G+ +   T   +L  C R+ +   G+ +H  +VK G   ++   
Sbjct: 90  HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAM 149

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +L+++Y+  G +  A ++FD++ +R VV+W ++ + Y  S     A   F  M + G++
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD   +V + S    + D  +   +  + M      ++  +   +V++YAK G +  A +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKY-MEEMEMQKNSFVRTTLVNLYAKCGKMEKARS 268

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHV 346
           VF+ +  KD+++W+T+I GYA N    E IE+F QM++E   + P+Q + V  L + + +
Sbjct: 269 VFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQE--NLKPDQFSIVGFLSSCASL 326

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL  G    + + ++    ++F+A  L+DMY KCG +     +F ++     V  NA I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S    +G    +   F Q    G+ PD  TF+ LL  C H+GL+ +G R+F+ +   + +
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           K  ++HYGCMVDL+GRAG L  A+  I +MP+RP+A +WGALL  CR+  + +L      
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L  ++  N G YV +SNIY+  G+W+   EVR +   +G+KK PG+S IE+  KV  F 
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFL 566

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
             +++HP  +KIY +L +L  +M+ +G+VP   FV  DVEE+EKE +L  HSE+LA+A G
Sbjct: 567 ADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALG 626

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS+     I++ KNLRVCGDCH   K IS+IT REI+VRD+NRFH F +G CSC DYW
Sbjct: 627 LISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 209/412 (50%), Gaps = 8/412 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ +V      E +D F       GL    +TFP VLKAC        G  +H  V+K 
Sbjct: 82  LINGFVNNHLFHETLDLFLSIR-KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKC 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DV    SLL +Y   G  N A KLFD++P R   +W A+ SGY  SG   EA+D+ 
Sbjct: 141 GFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLF 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV  D   +  +L  C    ++ SG  I  Y+ +  ++ N FV   L+N+YAK 
Sbjct: 201 KKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VFD M+E+D+V+W+++I  Y  ++ P      F  M Q  ++PD  ++V   
Sbjct: 261 GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFL 320

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L            I R   F+ ++ + NA++DMYAK G +     VF+ +  KD+
Sbjct: 321 SSCASLGALDLGEWGISLIDRHE-FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDI 379

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IH 356
           +  N  I+G A+NG    +  VF   E+   I+P+  T++ +L    H G ++ G++  +
Sbjct: 380 VIMNAAISGLAKNGHVKLSFAVFGQTEKLG-ISPDGSTFLGLLCGCVHAGLIQDGLRFFN 438

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           A      L   V    C+VD++G+ G +DDA  L   +P R +++ W A++S
Sbjct: 439 AISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/675 (36%), Positives = 370/675 (54%), Gaps = 15/675 (2%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  G ++H +++KLGF  D  +  +L+ MY + G  ++A ++FD MP R+  SW A++ 
Sbjct: 19  SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 78

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           G+   G A E L +  EMR  G S +  T+++ L  C       +G+ IH   V+ G E 
Sbjct: 79  GFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEG 136

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +  V+N+L+ MY+K      A RVFD +  R++ +WNS+I+ Y  +     +   F  MQ
Sbjct: 137 HDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQ 196

Query: 223 QA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF-MEDVIIGNAVVDMYAKLG 280
           +    QPD  T  SL    + L   R    VH  +  RG     + I+  A++D+Y K  
Sbjct: 197 RRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCH 256

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +  A  VF+GL  ++ I W T+I G+AQ G   EA+ +F+       +  +     S++
Sbjct: 257 RLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVV 315

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
             ++    + QG ++H    K     DV VA  LVDMY KCG   +A   F ++P  + V
Sbjct: 316 AVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVV 375

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W A+I+  G HG G +A++ F +M  EGV  D + +++LL+ACSHSGLV E +RYF  +
Sbjct: 376 SWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRI 435

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
            ++  ++P  +HY CMVDL GRAG L  A   I +MP+ P   +W  LL ACR+H ++ +
Sbjct: 436 CQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAV 495

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G    D L  VD +N   YV++SNI A  G+W     +R   R +GL+K  G S  EV+ 
Sbjct: 496 GREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDK 555

Query: 581 KVDIFY-TGNRTHPKYEKIYDELRNLTAKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHS 638
           +V  FY  G+  HP+   I   LR + A+M+  LGY  D    L DV+E+ +   L  HS
Sbjct: 556 EVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDEESRVESLREHS 615

Query: 639 ERLAIAFGIISSPPKSP--------IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           ERLA+   ++               ++++KNLRVCGDCH + K +S +  R ++VRD+NR
Sbjct: 616 ERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANR 675

Query: 691 FHHFKDGICSCGDYW 705
           FH F++G CSC DYW
Sbjct: 676 FHRFQNGACSCRDYW 690



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 220/421 (52%), Gaps = 19/421 (4%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L   AR  ++  G+ +H  ++K G   +  ++NNLI+MYAK G +  A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ER+VVSW +++  +    +       F  M+ +G  P+  TL +  ++ A     R    
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSA--TLKACGGGTRAGVQ 124

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG  +R G+   DV + N++V MY+K      A  VF+ +P +++ +WN++I+GYA  G
Sbjct: 125 IHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVF 369
              +++ VF+ M+  ++  P++ T+ S+L A S +GA R+G ++HA +    +    +  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           +A  L+D+Y KC R+  AM +F  + R +++ W  +I  H   GQ  +A+  FR+    G
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 430 VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           VR D     S++   +   LV +G Q + +  +   G+   + +   +VD++ + G  G 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGE 361

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE------VDSENVGYYVLM 542
           A    + MP R   S W A++     HG+   G  A D LFE      V+++ V Y  L+
Sbjct: 362 AGRRFREMPARNVVS-WTAMINGVGKHGH---GREAID-LFEEMQAEGVEADEVAYLALL 416

Query: 543 S 543
           S
Sbjct: 417 S 417



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 20/367 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS Y   G+  +++  F +       +PD +TF  +LKAC  L    +G ++H ++   
Sbjct: 175 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR 234

Query: 58  GFE--WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G     +  +A +LL +Y +     VA ++FD +  R++  W  +I G+ Q G   EA+ 
Sbjct: 235 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMC 294

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +       GV  D   ++S++ V A    +  G  +H Y  K     ++ V+N+L++MY 
Sbjct: 295 LFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYL 354

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD---LLT 232
           K G+   A R F +M  R+VVSW ++I    +      A   F  MQ  G++ D    L 
Sbjct: 355 KCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLA 414

Query: 233 LVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           L+S  S    +++CR   SR      MR             +VD+  + G +  A  +  
Sbjct: 415 LLSACSHSGLVDECRRYFSRICQDRRMR-----PKAEHYACMVDLLGRAGELREAKELIL 469

Query: 291 GLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
            +P++  +  W TL++    +   +   EV  ++   +  NP    YV +    +  G  
Sbjct: 470 SMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPV--NYVMLSNILAEAGEW 527

Query: 350 R--QGIK 354
           R  QGI+
Sbjct: 528 RECQGIR 534


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/570 (37%), Positives = 345/570 (60%), Gaps = 3/570 (0%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           +  C     +  G  +H ++VK      ++++  LI +Y + G +  A  V D M ER+V
Sbjct: 48  ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VSW ++I+ Y QS     A   F  M +AG + +  TL ++ +        +    VH  
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSL 167

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +++   F   + +G++++DMY K G I  A  VF+ LP +D +S   +I+GYAQ GL  E
Sbjct: 168 VVKTN-FESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDE 226

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+++F+ +     +  N  T+ ++L + S + +L  G ++H  +++  L F + +   L+
Sbjct: 227 ALDLFRQLYSSG-MQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLI 285

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           DMY KCG++  +  +F  +P+ S++ WNA++  +G HG G + +  FR M +E V+PD +
Sbjct: 286 DMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSV 344

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T +++L+ CSH GLV EG   F ++ +E     H+ HYGC++DL GR+G L  A + I++
Sbjct: 345 TLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEH 404

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MP  P  +IWG+LLGACR+H N+ +G V + +L +++  N G YV++SNIYA  G W+ V
Sbjct: 405 MPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDV 464

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
             VR L  +  + K P  S I ++  +  F++  R HP+ + I  +++ +   +K+ G+V
Sbjct: 465 FRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFV 524

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           PD S VL DV++++KE +L  HSE+LAI FG++++PP   IQ+ KNLR+C DCHN+ KF+
Sbjct: 525 PDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFV 584

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S++  REI +RD NRFH  KDG C+CGDYW
Sbjct: 585 SKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 214/394 (54%), Gaps = 12/394 (3%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G    F+ +   + AC   + L +G+++H  ++K  +   V++A  L+ +Y R G  + A
Sbjct: 36  GADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDA 95

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           R + D MP R+  SW AMISGY QSG   EAL++   M   G   +  T+A++L  C   
Sbjct: 96  RNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVH 155

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +I     +H  +VK   E ++FV ++L++MY K G ++ A +VFD + ERD VS  +II
Sbjct: 156 QSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAII 215

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR--G 260
           + Y Q      A   F  +  +G+Q + +T  +L + ++ L      + VHG I+R+   
Sbjct: 216 SGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELP 275

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           +F   +++ N+++DMY+K G +  +  VF+ +P +  ISWN ++ GY ++G+  E +++F
Sbjct: 276 FF---IVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLF 332

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYG 379
           + M E  E+ P+  T +++L   SH G + +G+ I   ++K       +    C++D+ G
Sbjct: 333 RTMTE--EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLG 390

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
           + G++  A+ L   +P   +   W +++    +H
Sbjct: 391 RSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 379/621 (61%), Gaps = 8/621 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC--RNLVD-GKKIHCSVLKL 57
           M++ YV+ G  + A+  F Q    S ++P+  +F  +L  C  R +V  G ++H  V++ 
Sbjct: 249 MLNGYVKNGDFNSALGTF-QEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRS 307

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D  VA +++ MY + G    ARK+FD MP  D+ +WN +I+GY Q+G   EA+ + 
Sbjct: 308 GFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALF 367

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   GV +D IT AS LP   +S ++     +H YIV+HG+ F++++ + L+++Y K 
Sbjct: 368 KAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKG 427

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A + F Q    DV    ++I+ Y  +   + A   F  + Q G+ P+ LT+ S+ 
Sbjct: 428 GDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVL 487

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              A L   +  + +H  I+++G  +E+V  +G+++  MYAK G ++ A   F  +PVKD
Sbjct: 488 PACAALASLKLGKELHCDILKKG--LENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKD 545

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            + WN +I  ++QNG    AI++F+ M   +    +  +  + L A ++  AL  G ++H
Sbjct: 546 SVCWNLMIVSFSQNGKPELAIDLFRQMGT-SGTKFDSVSLSATLSACANYPALYYGKELH 604

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             V++N    D FVA+ L+DMY KCG++  A S+F  +   + V WN+II+ +G HG+  
Sbjct: 605 CFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPR 664

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           + L+ F +M++ G++PDH+TF+ +++AC H+GLV EG  YF  M EE+GI   ++H+ CM
Sbjct: 665 ECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACM 724

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL+GRAG L  A + I++MP  PDA  WG+LLGACR+HGN+EL  +AS  L E+D  N 
Sbjct: 725 VDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNS 784

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL+SN++A  G+WE V +VRSL +++G++K PG+S I+VN    +F   +  HP+  
Sbjct: 785 GYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSV 844

Query: 597 KIYDELRNLTAKMKSLGYVPD 617
           +IY  L+NL  +++  GYVP 
Sbjct: 845 EIYLILKNLLLELRKHGYVPQ 865



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 301/606 (49%), Gaps = 26/606 (4%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F+   L S + PD YTFP V+KAC    N+   K +H     +GF  D+F+ +SL+ +Y 
Sbjct: 164 FFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYT 223

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  + A+ LFD++PVRD   WN M++GY ++G+   AL    EMR   V  + ++   
Sbjct: 224 DNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVC 283

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L VCA    + +G+ +H  +++ G E +  V+N +I MY+K G +  A ++FD M + D
Sbjct: 284 LLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTD 343

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            V+WN +IA Y Q+     A   F  M  +G++ D +T  S    V +    +  + VH 
Sbjct: 344 TVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHS 403

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           +I+R G    DV + +A+VD+Y K G +  AC  F+   + DV     +I+GY  NGL  
Sbjct: 404 YIVRHG-VPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNV 462

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+ +F+ + +   + PN  T  S+LPA + + +L+ G ++H  ++K  L     V + +
Sbjct: 463 EALNLFRWLIQEGMV-PNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSI 521

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
             MY K GR+D A   F ++P   SV WN +I     +G+ + A++ FRQM   G + D 
Sbjct: 522 TYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDS 581

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           ++  + L+AC++   +  G+   H                 ++D++ + G L +A +   
Sbjct: 582 VSLSATLSACANYPALYYGKE-LHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFD 640

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKW 552
            M  + + S W +++ A   HG           + E  +  ++V + V+MS         
Sbjct: 641 MMDWKNEVS-WNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVD 699

Query: 553 EGVDEVRSLARDRGL-KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           EG+   R +  + G+  +   ++ +     VD++    R H  ++ I           KS
Sbjct: 700 EGIYYFRCMTEEYGICARMEHFACM-----VDLYGRAGRLHEAFDTI-----------KS 743

Query: 612 LGYVPD 617
           + + PD
Sbjct: 744 MPFTPD 749



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 256/508 (50%), Gaps = 13/508 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDG--KKIHCSVLKLGFEWDVFVAASLLHMY-- 73
            ++ +L + L   F  FP    +  +LV    ++IH  VL  G    + + + +L MY  
Sbjct: 67  LFEESLAAQLESMFRAFP---NSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVL 123

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
           CR    +V   LF  + +  S  WN +I G+   G    AL     M    V+ D  T  
Sbjct: 124 CR-SFKDVG-NLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFP 181

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
            ++  C   +N+    ++H      G   +LF+ ++LI +Y   G +  A  +FD++  R
Sbjct: 182 YVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVR 241

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           D + WN ++  Y ++ D  +A G F  M+ + ++P+ ++ V L S+ A     R    +H
Sbjct: 242 DCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLH 301

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G ++R G F  D  + N ++ MY+K G +  A  +F+ +P  D ++WN LI GY QNG  
Sbjct: 302 GLVIRSG-FESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFT 360

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA+ +F+ M   + +  +  T+ S LP+    G+L+   ++H+ ++++ + FDV++ + 
Sbjct: 361 DEAVALFKAMVT-SGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSA 419

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           LVD+Y K G ++ A   F Q          A+IS + ++G   +ALN FR ++ EG+ P+
Sbjct: 420 LVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPN 479

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +T  S+L AC+    +  G+   H    + G++   +    +  ++ ++G L +A+ F 
Sbjct: 480 CLTMASVLPACAALASLKLGKE-LHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFF 538

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELG 521
           + MPV+ D+  W  ++ +   +G  EL 
Sbjct: 539 RRMPVK-DSVCWNLMIVSFSQNGKPELA 565


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/698 (34%), Positives = 394/698 (56%), Gaps = 24/698 (3%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+  D +    ++ AC   + L +G+++H  ++  GF  D+ +  +LL MY + G  + A
Sbjct: 5   GIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDA 64

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
           +++F+ M ++D  +W+++IS Y ++G    A+ +   M  EGV  + +T A  L  CA  
Sbjct: 65  KRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASV 124

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH  I+   +  +  + ++L+NMY K   M  A +VF+ M  R+V S+ ++I
Sbjct: 125 AGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMI 184

Query: 203 AAYEQSNDPITAHGFFTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +AY Q+ +   A   F+ M +   I+P+  T  ++   V  L +    R VH  +  RG 
Sbjct: 185 SAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRG- 243

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F  +V++ NA+V MY K G    A  VF+ +  ++VISW ++I  YAQ+G   EA+ +F+
Sbjct: 244 FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFK 303

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+    + P+  ++ S L A + +GAL +G +IH RV++  L     + T L+ MY +C
Sbjct: 304 RMD----VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLA-SPQMETSLLSMYARC 358

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G +DDA  +F ++    +   NA+I+    HG+  +AL  +R+M  EG+  D ITFVS+L
Sbjct: 359 GSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVL 418

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSH+ LV++ + +F  +  + G+ P ++HY CMVD+ GR+G LG A   ++ MP + D
Sbjct: 419 VACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTD 478

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           A  W  LL  C+ HG++  G  A+ ++FE+       YV +SN+YA   +++    VR  
Sbjct: 479 AVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKE 538

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK-------YEKIYDELRNLTAKMKSLGY 614
             +RG+      S IE++N++ +F +G R   +        E++   L  L   MK  GY
Sbjct: 539 MEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGY 598

Query: 615 VPDKSFVLQDVE----EDEKEHILTSHSERLAIAFGIISS--PPKS-PIQIFKNLRVCGD 667
           VPD   V  + +    E+EK+  L  HSERLAIA+G+I++  P  S P+++  + RVC D
Sbjct: 599 VPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSD 658

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K +S I E+ I VRD NRFHHF+ G CSCGD+W
Sbjct: 659 CHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSCGDHW 696



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 199/398 (50%), Gaps = 7/398 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M   G+  D   V S++  C +   +  G  +H +++  G   ++ +   L+ MYAK G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVF+ M  +D+ +W+SII+AY ++     A   +  M   G++P+++T       
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A +    + R++H  I+      +DV + +++++MY K   +  A  VFEG+  ++V S
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           +  +I+ Y Q G  +EA+E+F  M +   I PN  T+ +IL A   +G L +G K+H  +
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 239

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
                  +V V   LV MYGKCG   +A  +F  +   + + W ++I+ +  HG   +AL
Sbjct: 240 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 299

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           N F++M    V P  ++F S L AC+  G + EG+   H + E     P ++    ++ +
Sbjct: 300 NLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSM 354

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
           + R G L  A      M  R DA    A++ A   HG 
Sbjct: 355 YARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGR 391



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 170/323 (52%), Gaps = 24/323 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MIS YV+ G  +EA++ F + +    + P+ YTF  +L A     NL  G+K+H  +   
Sbjct: 183 MISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASR 242

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V V  +L+ MY + G    ARK+FD M  R+  SW +MI+ Y Q GN  EAL++ 
Sbjct: 243 GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLF 302

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M +E      ++ +S L  CA    +  G  IH  +V+  L  +  +  +L++MYA+ 
Sbjct: 303 KRMDVEPSG---VSFSSALNACALLGALDEGREIHHRVVEAHLA-SPQMETSLLSMYARC 358

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL- 236
           G +  A RVF++M  RD  S N++IAA+ Q      A   +  M+Q GI  D +T VS+ 
Sbjct: 359 GSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVL 418

Query: 237 -----TSIVAQLNDCRNSRSVHGFIMRRGW--FMEDVIIGNAVVDMYAKLGIINSACAVF 289
                TS+VA   DCR+       +M  G    +E  +    +VD+  + G +  A  + 
Sbjct: 419 VACSHTSLVA---DCRD--FFQSLVMDHGVVPLVEHYL---CMVDVLGRSGRLGDAEELV 470

Query: 290 EGLPVK-DVISWNTLITGYAQNG 311
           E +P + D ++W TL++G  ++G
Sbjct: 471 ETMPYQTDAVAWMTLLSGCKRHG 493


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 341/594 (57%), Gaps = 42/594 (7%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H  +++ GL+ + ++ N ++     FG   ++ R+F Q  E ++  +N++I     ++ 
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              +   + +M++ G+ PD  T   L    A+L D +    +HG +++ G    D  +  
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC-ESDAFVNT 147

Query: 271 AVVDMYAKLGIINSA--------------------------------------CAVFEGL 292
           ++V +Y K G I++A                                      C+VF+G+
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGM 207

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
             KD++SW+++I GYA NGL  EA+++F +M+ E     P+    V +L A + +GAL  
Sbjct: 208 LEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNE--GFRPDCYAMVGVLCACARLGALEL 265

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G      + +N    +  + T L+DMY KCGR+D A  +F  + +   V WNA IS   +
Sbjct: 266 GNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAM 325

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
            G    A   F QM   G+ PD  TFV LL AC+H+GLV EG++YF+ M+  F + P ++
Sbjct: 326 SGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIE 385

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGCMVDL GRAG L  AH  +++MP+  +A +WGALLG CR+H + +L      +L  +
Sbjct: 386 HYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIAL 445

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           +  N G YVL+SNIY+   KWE   ++RS+  +RG+KK PG+S IEV+  V  F  G+ +
Sbjct: 446 EPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTS 505

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           HP  EKIY +L  L   +K+ GYVP   +VL D+EE+EKEH +  HSE+LAIAFG+IS+ 
Sbjct: 506 HPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTA 565

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P   I++ KNLRVCGDCH   K IS+ T REIIVRD+NRFH F DG CSC DYW
Sbjct: 566 PNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 198/421 (47%), Gaps = 46/421 (10%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K +H ++L+LG + D ++   +L     FG  N + ++F      +   +N MI G   +
Sbjct: 27  KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
            +  E+++I   MR EG+S D  T   +L  CAR  +   G+ +H  +VK G E + FV+
Sbjct: 87  DSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVN 146

Query: 168 NNLINMYAKFG--------------------------------------MMRHALRVFDQ 189
            +L+++Y K G                                      M R A  VFD 
Sbjct: 147 TSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDG 206

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M+E+D+VSW+S+I  Y  +  P  A   F  M   G +PD   +V +    A+L      
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG 266

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
                 +M R  F+ + ++G A++DMYAK G ++SA  VF G+  KD++ WN  I+G A 
Sbjct: 267 NWASN-LMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAM 325

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL---RQGIKIHARVIKNCLCF 366
           +G    A  +F  ME+   I P+  T+V +L A +H G +   RQ      RV    L  
Sbjct: 326 SGHVKAAFGLFGQMEKSG-IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFT--LTP 382

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
           ++    C+VD+ G+ G +D+A  L   +P  ++++ W A++    +H          +Q+
Sbjct: 383 EIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQL 442

Query: 426 L 426
           +
Sbjct: 443 I 443



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 174/400 (43%), Gaps = 47/400 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK---KIHCSVLKL 57
           MI   V      E+++ ++      GL PD +TFP +LKAC  L+D K   K+H  V+K 
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMR-KEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKA 137

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD--------SG-------------- 95
           G E D FV  SL+ +Y + G  + A K+FDD+P ++        SG              
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMF 197

Query: 96  ----------------SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
                           SW++MI GY  +G   EALD+  +M  EG   D   +  +L  C
Sbjct: 198 RRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCAC 257

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           AR   +  G      + ++    N  +   LI+MYAK G M  A  VF  M ++D+V WN
Sbjct: 258 ARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           + I+    S     A G F  M+++GI+PD  T V L             R     + R 
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIE 318
                ++     +VD+  + G ++ A  + + +P++ + I W  L+ G     L  +   
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCR---LHRDTQL 434

Query: 319 VFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHA 357
           V  ++++   + P N G YV +   YS         KI +
Sbjct: 435 VEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRS 474



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 140/316 (44%), Gaps = 44/316 (13%)

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
            N  ++ + VH  ++R G   ED  + N V+      G  N +  +F      ++  +NT
Sbjct: 20  FNSLKHLKHVHAALLRLG-LDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
           +I G   N    E+IE++  M +   ++P+  T+  +L A + +   + GIK+H  V+K 
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRK-EGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKA 137

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS--------------- 407
               D FV T LV +YGKCG ID+A  +F  +P  +   W AIIS               
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMF 197

Query: 408 ---CHGIHGQGDK--------------------ALNFFRQMLDEGVRPDHITFVSLLTAC 444
              C    G  +K                    AL+ F +ML+EG RPD    V +L AC
Sbjct: 198 RRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCAC 257

Query: 445 SHSGLVSEGQRYFHMM-QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           +  G +  G    ++M + EF   P L     ++D++ + G +  A    + M  + D  
Sbjct: 258 ARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSAWEVFRGMR-KKDIV 314

Query: 504 IWGALLGACRIHGNME 519
           +W A +    + G+++
Sbjct: 315 VWNAAISGLAMSGHVK 330



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 126/332 (37%), Gaps = 48/332 (14%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLG-- 58
           MI  Y   G   EA+D F++  L  G RPD Y    VL AC  L          L+LG  
Sbjct: 218 MIQGYASNGLPKEALDLFFKM-LNEGFRPDCYAMVGVLCACARL--------GALELGNW 268

Query: 59  ---------FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
                    F  +  +  +L+ MY + G  + A ++F  M  +D   WNA ISG   SG+
Sbjct: 269 ASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGH 328

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS-- 167
              A  +  +M   G+  D  T   +L  C  +  +  G     Y       F L     
Sbjct: 329 VKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEG---RQYFNSMERVFTLTPEIE 385

Query: 168 --NNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
               ++++  + G +  A ++   M ME + + W +++       D     G     Q  
Sbjct: 386 HYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLK--QLI 443

Query: 225 GIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--------WFMEDVIIGNAVV-- 273
            ++P +    V L++I +  +   ++  +   +  RG        W   D ++   +V  
Sbjct: 444 ALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGD 503

Query: 274 -------DMYAKLGIINSACAVFEGLPVKDVI 298
                   +YAKLG +         +P  D +
Sbjct: 504 TSHPLSEKIYAKLGELVKDLKASGYVPTTDYV 535


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 350/607 (57%), Gaps = 43/607 (7%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L +C +    L+   IH  IVK GL     + N L++ Y K  +++ A  +FD+M +RD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 196 VSWNSIIAAYEQSNDPITA----HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           VSW SI+ AY Q+  P       H  FTT +   +QPD     +L    A L   R  + 
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDR---LQPDHFVYATLLKACASLCSLRLGKQ 125

Query: 252 VHG-FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           VH  F++    F++D ++ +++VDMYAK G+ + A +VF+ + VK  +SW  +++GYA++
Sbjct: 126 VHARFVLSP--FVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS 183

Query: 311 GLASEAIEVF--------------------------------QMMEECNEINPNQGTYVS 338
           GL  EA+E+F                                +M  E  +I  +     S
Sbjct: 184 GLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDI-VDPLVLSS 242

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           ++ A +++  L  G +IH  VI +     +F++  LVDMY KC  I  A ++F ++    
Sbjct: 243 VVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRD 302

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V W +II     HG+  +AL+ + QM+   ++P+ +TFV L+ ACSH+GLVS+G++ F 
Sbjct: 303 VVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFK 362

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M E++ I P L+ + C +DL  R+GHL  A + I+ MP +PD   W ALL AC+ HGN 
Sbjct: 363 AMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNT 422

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           E+G   +DRL  ++      YVL+SN+YA  GKWE +  VR L  D  +K+ PG+SSI++
Sbjct: 423 EMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDL 482

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
             +  +F+ G   HP  ++I+  L+ L A+M+  GY+PD S+VL D+EE EKE  L  HS
Sbjct: 483 GKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHS 542

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           ER A+A+G++ + P + I+I KNLR+CGDCH + K  S I  +EIIVRD+ R+HHFKDG 
Sbjct: 543 ERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGR 602

Query: 699 CSCGDYW 705
           CSC D+W
Sbjct: 603 CSCNDFW 609



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 217/460 (47%), Gaps = 39/460 (8%)

Query: 45  VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           ++ KKIH  ++K G      +  +LL  Y +  L   A  LFD+MP RD  SW ++++ Y
Sbjct: 19  LNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAY 78

Query: 105 CQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
            Q+    + L I   M   + +  D    A++L  CA   ++  G  +H   V      +
Sbjct: 79  NQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDD 138

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN-------------- 209
             V ++L++MYAK G+   A  VFD ++ +  VSW ++++ Y +S               
Sbjct: 139 DVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPV 198

Query: 210 ----------DPITAHGF-------FTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRS 251
                       +   G+       F  M++ G+   D L L S+    A L      + 
Sbjct: 199 RNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ 258

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG ++  G +   + I NA+VDMYAK   I +A  VF  +  +DV+SW ++I G AQ+G
Sbjct: 259 IHGLVIGSG-YESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHG 317

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFV 370
            A EA++++  M    EI PN+ T+V ++ A SH G + +G K+   +I++  +   + +
Sbjct: 318 RAKEALDLYDQM-VLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQL 376

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEG 429
            TC +D+  + G +++A  L   +P     P W A++S    HG  +  +    ++L   
Sbjct: 377 FTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLN 436

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE-EFGIKP 468
           +  +  T+V L    + +G   +  R   +M + E   KP
Sbjct: 437 MH-EPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKP 475



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 181/391 (46%), Gaps = 38/391 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ Y +    ++ +  F+    T  L+PD + +  +LKAC +L     GK++H   +  
Sbjct: 74  ILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLS 133

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  D  V +SL+ MY + GL ++AR +FD + V+ S SW AM+SGY +SG   EA+++ 
Sbjct: 134 PFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELF 193

Query: 118 -------------------------------DEMRLEGVSM-DPITVASILPVCARSDNI 145
                                           EMR EGV + DP+ ++S++  CA    +
Sbjct: 194 LRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVL 253

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH  ++  G E  LF+SN L++MYAK   +  A  VF++M+ RDVVSW SII   
Sbjct: 254 GLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGA 313

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q      A   +  M  A I+P+ +T V L    +        R +   ++        
Sbjct: 314 AQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPS 373

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMME 324
           + +    +D+ ++ G +N A  + + +P K D  +W  L++    +G     + +   + 
Sbjct: 374 LQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLL 433

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
             N   P+  TYV +   Y+  G   Q  ++
Sbjct: 434 SLNMHEPS--TYVLLSNVYAGAGKWEQMSRV 462


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 343/603 (56%), Gaps = 34/603 (5%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L +CAR  +  +   +H  I+K G + +  +SN L+++Y K G++  AL++FD+M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VSW SI+ A+ ++  P        TM    G+QPD      +    + L   R  + VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
             M    F +D ++ ++++DMY K G  + A AVF+ +  K+ +SW ++I+GYA++G   
Sbjct: 130 RFML-SXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 315 EAIEVFQMMEECNE----------INPNQGTYV---------------------SILPAY 343
           EA+++F      N           I    G Y                      S++   
Sbjct: 189 EAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
           +++  L  G +IH  VI       +F++  LVDMY KC  I  A  +FY++PR   + W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           +II     HG+ ++AL  + +M+   ++P+ +TFV LL ACSH+GLVS G+  F  M  +
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           + I P L+HY C++DL  R+GHL  A N +  +P +PD   W +LL AC  H N+E+G  
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583
            +DR+ ++  E+   Y+L+SN+YA    W  V +VR L     ++K PG+SSI+      
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQ 488

Query: 584 IFYTGNRT-HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
           +F+ G    HP   +I + L++L A+M+  GYVP+ SFVL D+E+ EKE  L  HSERLA
Sbjct: 489 VFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLA 548

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +A+G++ + P + I+I KNLR+CGDCHN  KFIS I +REI+VRD+ R+HHFK+G CSC 
Sbjct: 549 VAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCN 608

Query: 703 DYW 705
           D+W
Sbjct: 609 DFW 611



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 209/429 (48%), Gaps = 39/429 (9%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           ++H  ++K GF+    ++ +LL +Y + GL   A +LFD+MP RD  SW ++++ + ++ 
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 109 NAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
                L +L+ M   +G+  D    A I+  C+    +  G  +H   +      +  V 
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVK 143

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE--------------------- 206
           ++LI+MY K G    A  VFD ++ ++ VSW S+I+ Y                      
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 207 ----------QSNDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
                     QS   I +   F  M++ GI   D L L S+    A L      + +HG 
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           ++  G F   + I NA+VDMYAK   I +A  +F  +P KDVISW ++I G AQ+G A E
Sbjct: 264 VIALG-FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEE 322

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCL 374
           A+ ++  M   + I PN+ T+V +L A SH G + +G ++   +  +  +   +   TCL
Sbjct: 323 ALTLYDEM-VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCL 381

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           +D+  + G +D+A +L  ++P     P W +++S    H   +  +    ++LD  ++P+
Sbjct: 382 LDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD--LKPE 439

Query: 434 HITFVSLLT 442
             +   LL+
Sbjct: 440 DPSTYILLS 448



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 38/355 (10%)

Query: 26  GLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           GL+PD + F  +++AC +L     GK++H   +   F  D  V +SL+ MY + G  + A
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEA 159

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL------------------------- 117
           R +FD +  ++S SW +MISGY +SG   EA+D+                          
Sbjct: 160 RAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGI 219

Query: 118 ------DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
                 +EMR EG+ + DP+ ++S++  CA    +  G  IH  ++  G E  LF+SN L
Sbjct: 220 YSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNAL 279

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MYAK   +  A  +F +M  +DV+SW SII    Q      A   +  M  + I+P+ 
Sbjct: 280 VDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNE 339

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           +T V L    +        R +   +         +     ++D+ ++ G ++ A  + +
Sbjct: 340 VTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLD 399

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
            +P K D  +W +L++   ++      + +   + +    +P+  TY+ +   Y+
Sbjct: 400 KIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPS--TYILLSNVYA 452



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 149/333 (44%), Gaps = 41/333 (12%)

Query: 234 VSLTSIVAQLNDCRNSRS------VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           ++++  + QL  C   +S      +H  I++ G F +  ++ N ++D+Y K G+I  A  
Sbjct: 1   MNISHFLHQLQLCARRQSASAAGELHSQIIKAG-FDKSSLLSNTLLDVYGKCGLIPQALQ 59

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +F+ +P +D +SW +++T + +  +    + +   M   + + P+   +  I+ A S +G
Sbjct: 60  LFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLG 119

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID---------------------- 385
            LR G ++HAR + +  C D  V + L+DMY KCG+ D                      
Sbjct: 120 YLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMIS 179

Query: 386 ---------DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PDHI 435
                    +AM LF Q P  +   W A+IS     G G  + + F +M  EG+   D +
Sbjct: 180 GYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPL 239

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
              S++  C++  L+  G++  H +    G +  L     +VD++ +   +  A +    
Sbjct: 240 VLSSVVGGCANLALLELGKQ-IHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYR 298

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
           MP R D   W +++     HG  E      D +
Sbjct: 299 MP-RKDVISWTSIIVGTAQHGKAEEALTLYDEM 330



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 36/246 (14%)

Query: 1   MISVYVRCGRLSEAVDCF-------------------------YQFTLTSGLRP------ 29
           MIS Y R GR  EA+D F                         Y F+L + +R       
Sbjct: 177 MISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIV 236

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D      V+  C NL     GK+IH  V+ LGFE  +F++ +L+ MY +      A+ +F
Sbjct: 237 DPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIF 296

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             MP +D  SW ++I G  Q G A EAL + DEM L  +  + +T   +L  C+ +  + 
Sbjct: 297 YRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVS 356

Query: 147 SGL-LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G  L       + +  +L     L+++ ++ G +  A  + D++  + D  +W S+++A
Sbjct: 357 RGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416

Query: 205 YEQSND 210
             + N+
Sbjct: 417 CMRHNN 422


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/533 (40%), Positives = 320/533 (60%), Gaps = 3/533 (0%)

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
           MY K G +  A  VFD+M  RDVVSW  +IA Y Q+  P  A G    M +A  +P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
             SL         C     +H   ++  W  EDV +G+A++DMYA+   ++ A  VF+ L
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNW-DEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             K+ +SWN LI G+A+       +  F  M+  N       TY S+  A++ +GAL QG
Sbjct: 120 VSKNEVSWNALIAGFARKADGETTLMKFAEMQR-NGFGATHFTYSSMFSAFARIGALEQG 178

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +HA +IK+      FV   ++ MY K G + DA  +F ++ +   V WN +++    +
Sbjct: 179 RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQY 238

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +A+  F ++   G++ + ITF+S+LTACSH GLV EG+ YF MM++ + ++P + H
Sbjct: 239 GLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDH 297

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y   VDL GRAG L  A  F+  MP+ P A++WGALLGACR+H N ++G  A+D +FE+D
Sbjct: 298 YVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELD 357

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            ++ G  VL+ NIYA+ GKW     VR + +  G+KK P  S +++ N V +F   + TH
Sbjct: 358 PDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTH 417

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 652
           PK   IY     +  ++K  GYVP+ + VL  + E E+E  L  HSE++A+AF +I+ P 
Sbjct: 418 PKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPA 477

Query: 653 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + I+I KN+R+CGDCH+  K++S++ +REI+VRD+NRFHHF +G CSCGDYW
Sbjct: 478 GASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 180/342 (52%), Gaps = 3/342 (0%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MYC+ G  + AR +FD MP RD  SW  +I+GY Q+    EA+ +L +M       +  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
             S+L           G  +H   VK+  + +++V + L++MYA+   M  A+ VFD+++
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
            ++ VSWN++IA + +  D  T    F  MQ+ G      T  S+ S  A++      R 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH  +++ G  +    +GN ++ MYAK G +  A  VF+ +  +D+++WNT++T  AQ G
Sbjct: 181 VHAHLIKSGQKLT-AFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYG 239

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           L  EA+  F+ + +C  I  NQ T++S+L A SH G +++G      +    +  ++   
Sbjct: 240 LGKEAVAHFEEIRKCG-IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHY 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
              VD+ G+ G + +A+   +++P   ++  W A++    +H
Sbjct: 299 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 340



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 148/287 (51%), Gaps = 7/287 (2%)

Query: 23  LTSGLRPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L +  RP+ +TF  +LKA   C     G+++H   +K  ++ DV+V ++LL MY R    
Sbjct: 50  LRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQM 109

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           ++A  +FD +  ++  SWNA+I+G+ +  +    L    EM+  G      T +S+    
Sbjct: 110 DMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAF 169

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           AR   +  G  +H +++K G +   FV N ++ MYAK G M  A +VFD+M +RD+V+WN
Sbjct: 170 ARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWN 229

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           +++ A  Q      A   F  +++ GIQ + +T +S+ +  +     +  +  H F M +
Sbjct: 230 TMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGK--HYFDMMK 287

Query: 260 GWFMEDVIIGN-AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLI 304
            + ++  I    + VD+  + G++  A      +P++   + W  L+
Sbjct: 288 DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALL 334


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/690 (34%), Positives = 386/690 (55%), Gaps = 67/690 (9%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP---V 138
           A  LFD MP        A+ +      +      +   MR  GV  D  T   +      
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSS 115

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNL-FVSNNLINMYAKFGMMRHALRVFD--------- 188
            +R  ++L   ++H   ++  L     FVSN+LI+MY + G+   A R FD         
Sbjct: 116 SSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVA 175

Query: 189 ----------------------QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
                                 Q   RDV+SW S+IAAY ++N    A G F TM   GI
Sbjct: 176 WTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGI 235

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIG---------------- 269
            PD +T++++ S  A+L D    RS+H  +  +G    E++++                 
Sbjct: 236 APDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 270 --------------NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
                         NA++D Y K G ++ A ++F+ + V+D+I++N+++TGY  +G   E
Sbjct: 296 VFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+ +F  M   +++  +  T V++L A + +GAL+QG  +HA + +  +  D+++ T L+
Sbjct: 356 ALLLFMSMRR-HDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALL 414

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           DMY KCGR+D+A  +F ++ +     W A+I+    +G G  AL  F QM  +G +P+ +
Sbjct: 415 DMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSV 474

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           +++++LTACSHS L++EG+ YF  M+  + I P ++HYGCM+DL GR+G L  A + ++ 
Sbjct: 475 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 534

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MP++P+A IW ++L ACR+H +++L   A++ L +++ +  G YV + NIY +  +WE  
Sbjct: 535 MPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENA 594

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
            ++R L  +R +KKT G+SSI V  +V  F   +++HP+  +I   L  ++ ++KSLGY 
Sbjct: 595 SKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYS 654

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           P  S +  DV+E+EKE  L +HSE+LAIAFG+I+  P  P+ I KNLRVC DCH+  K I
Sbjct: 655 PLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLI 714

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S++  REIIVRD +RFHHF++G CSC D+W
Sbjct: 715 SRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 178/394 (45%), Gaps = 69/394 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y R  R  EAV CF +  L+ G+ PD  T   VL AC  L D   G+ +H  V + 
Sbjct: 210 LIAAYSRANRAREAVGCF-KTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEK 268

Query: 58  GFEWDVFVAASLLHM--------------------------------YCRFGLANVARKL 85
           G      +  +L+ M                                YC+ G  +VAR L
Sbjct: 269 GMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSL 328

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+M VRD  ++N+M++GY  SG   EAL +   MR   + +D  TV ++L  CA    +
Sbjct: 329 FDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGAL 388

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  I +  +E ++++   L++MY K G +  A  VF +M +RDV +W ++IA  
Sbjct: 389 QQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGL 448

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFM 263
             +     A   F  M+  G QP+ +      S +A L  C      H  ++  G  +F 
Sbjct: 449 AFNGMGKAALEHFYQMRCDGFQPNSV------SYIAVLTACS-----HSCLLNEGRLYFD 497

Query: 264 EDVIIGN---------AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQN 310
           E  I+ N          ++D+  + G+++ A  + + +P++ + + W ++++    +   
Sbjct: 498 EMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHI 557

Query: 311 GLASEAIEVFQMMEECNEINPNQ-GTYVSILPAY 343
            LA  A E    +E      P++ G YV +   Y
Sbjct: 558 DLAQCAAEHLLKLE------PDEDGVYVQLYNIY 585



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 187/452 (41%), Gaps = 84/452 (18%)

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGM-MRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           LL+H    +H L       N+L+N      + +R+AL +FD+M     +   ++ A    
Sbjct: 28  LLLHPPSARHLL-------NSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACSRA 80

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLT---LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
            +DP      F  M++AG++PD  T   L   +S  ++ +       +H   +R      
Sbjct: 81  GSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSA 140

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGL-------------------------------P 293
              + N+++ MY +LG+   A   F+ +                               P
Sbjct: 141 APFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAP 200

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
           V+DVISW +LI  Y++   A EA+  F+ M   + I P++ T +++L A + +  L  G 
Sbjct: 201 VRDVISWTSLIAAYSRANRAREAVGCFKTMLS-HGIAPDEVTVIAVLSACAKLKDLELGR 259

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV---PRSSSVPWNAIISCHG 410
            +H  V +  +     +   L+DMY KCG    A  +F  +   PR  S  WNAII  + 
Sbjct: 260 SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS--WNAIIDGYC 317

Query: 411 IHGQGD-------------------------------KALNFFRQMLDEGVRPDHITFVS 439
            HG  D                               +AL  F  M    +R D+ T V+
Sbjct: 318 KHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVN 377

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           LLTAC+  G + +G R  H   E+  ++  +     ++D++ + G +  A    Q M  R
Sbjct: 378 LLTACASLGALQQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKR 436

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEV 531
            D   W A++     +G   +G  A +  +++
Sbjct: 437 -DVHTWTAMIAGLAFNG---MGKAALEHFYQM 464


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/604 (38%), Positives = 348/604 (57%), Gaps = 50/604 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           IH   +K G+  N  + N +++     +FG M +A ++FD + E  V SWN +   Y + 
Sbjct: 33  IHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRI 92

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSL-----TSIVAQL-------------------- 243
             P      +  M +  ++PD  T   L      S+  QL                    
Sbjct: 93  ACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAH 152

Query: 244 NDCRNSRSVHGFI-MRRGWF---------------------MEDVIIGNAVVDMYAKLGI 281
           N   N  S+ G I M RG F                      +DVI   A+V  +   G 
Sbjct: 153 NALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQ 212

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +++A   F  +P +D +SW  +I GY +     EA+ +F+ M+  ++I P++ T VS+L 
Sbjct: 213 VDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT-SKIKPDEFTMVSVLT 271

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           A + +GAL  G  I   + KN +  D FV   L+DMY KCG ++ A+S+F  +P+     
Sbjct: 272 ACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFT 331

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W A++    I+G G++ALN F QML   V PD +T+V +L+AC+H+G+V EG+++F  M 
Sbjct: 332 WTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMT 391

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
              GI+P++ HYGCMVDL G+AGHL  AH  I+NMP++P++ +WGALLGACRIH + E+ 
Sbjct: 392 ARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMA 451

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
             A +++ E++  N   YVL  NIYA   KW+ + E+R +  DRG+KKTPG S IE+N  
Sbjct: 452 ERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGI 511

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+++HP+ ++IY +L  +T+ +K  GY P+ S V  D+ E++KE+ +  HSE+L
Sbjct: 512 VHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKL 571

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           AIAFG+I+S P   I+I KNLR+C DCH+  K +S++ +RE+IVRD  RFHHF+ G CSC
Sbjct: 572 AIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSC 631

Query: 702 GDYW 705
            DYW
Sbjct: 632 KDYW 635



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 205/447 (45%), Gaps = 56/447 (12%)

Query: 35  PPV--LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMP 90
           PP+   + C+++   K+IH   +K G   +  +   +L   C   FG    AR+LFD +P
Sbjct: 16  PPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIP 75

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
                SWN M  GY +       + +  EM    V  D  T   +     RS  +  G  
Sbjct: 76  EPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRE 135

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H ++VK+GL+ N+F  N LINMY+  G++  A  +FD   + DVV+WN++I+ Y +   
Sbjct: 136 LHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKK 195

Query: 211 PITA-----HGF-------------------------------------------FTTMQ 222
            + +      GF                                           F  MQ
Sbjct: 196 DVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ 255

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
            + I+PD  T+VS+ +  AQL        +  +I  +     D  +GNA++DMY K G +
Sbjct: 256 TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYI-DKNKVKNDTFVGNALIDMYFKCGNV 314

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             A ++F  LP +D  +W  ++ G A NG   EA+ +F  M + + + P++ TYV +L A
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS-VTPDEVTYVGVLSA 373

Query: 343 YSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            +H G + +G K  A +  ++ +  ++    C+VD+ GK G + +A  +   +P + +S+
Sbjct: 374 CTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSI 433

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLD 427
            W A++    IH   + A     Q+L+
Sbjct: 434 VWGALLGACRIHKDAEMAERAIEQILE 460



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 55/369 (14%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L   ++PD YT+P + K     V    G+++HC V+K G + +VF   +L++MY 
Sbjct: 101 LYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYS 160

Query: 75  RFGLANVARKLFD----------------------------------------------- 87
             GL ++AR +FD                                               
Sbjct: 161 LCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYF 220

Query: 88  -DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
             MP RD  SW AMI GY +     EAL +  EM+   +  D  T+ S+L  CA+   + 
Sbjct: 221 HKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALE 280

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G  I  YI K+ ++ + FV N LI+MY K G +  AL +F+ + +RD  +W +++    
Sbjct: 281 LGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLA 340

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
            +     A   F+ M +A + PD +T V + S           +     +  R     ++
Sbjct: 341 INGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNI 400

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEE 325
                +VD+  K G +  A  + + +P+K + I W  L+ G  +    +E  E  + +E+
Sbjct: 401 AHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALL-GACRIHKDAEMAE--RAIEQ 457

Query: 326 CNEINPNQG 334
             E+ PN G
Sbjct: 458 ILELEPNNG 466



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 21/376 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y+R     EA+  F +   TS ++PD +T   VL AC  L     G+ I   + K 
Sbjct: 234 MIDGYLRLNCYKEALMLFREMQ-TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKN 292

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + D FV  +L+ MY + G   +A  +F+ +P RD  +W AM+ G   +G   EAL++ 
Sbjct: 293 KVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMF 352

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M    V+ D +T   +L  C  +  +  G         +HG+E N+     ++++  K
Sbjct: 353 SQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGK 412

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            G ++ A  +   M M+ + + W +++ A     D   A      + +  ++P+   +  
Sbjct: 413 AGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILE--LEPNNGAVYV 470

Query: 236 LT-SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           L  +I A  N     R +   +M RG        G ++++M    GI++   A  +  P 
Sbjct: 471 LQCNIYAACNKWDKLRELRQVMMDRGI---KKTPGCSLIEMN---GIVHEFVAGDQSHPQ 524

Query: 295 KDVI--SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
              I    N + +     G +    EVF  + E ++ N        +  A+   G +  G
Sbjct: 525 TKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAF---GLINSG 581

Query: 353 IKIHARVIKNC-LCFD 367
             +  R++KN  +C D
Sbjct: 582 PGVTIRIVKNLRMCID 597


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 361/616 (58%), Gaps = 10/616 (1%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S  WN  +    +    ++AL +  +M   G   +  T    L  CA     + G   H 
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 73

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERDVVSWNSIIAAYEQSNDP 211
            I K G  F  FV   LI+MY K  ++ +A +VF++     +  V +N++++ Y  ++  
Sbjct: 74  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 133

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F  M + G+  + +TL+ L        +     S+H   ++ G F  DV + N 
Sbjct: 134 SEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG-FDSDVSVVNC 192

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            + MY K G +N A  +F+ +PVK +ISWN +++GYAQNGLA+  +E+++ M+  N ++P
Sbjct: 193 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD-MNGVHP 251

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T V +L + +++GA   G ++  ++  +    + F+   L++MY +CG +  A ++F
Sbjct: 252 DPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVF 311

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P  + V W AII  +G+HG G+ A+  F++M+  G+ PD   FV +L+ACSH+GL  
Sbjct: 312 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 371

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G  YF MM+  + ++P  +HY CMVDL GRAG L  A   I++MP++PD ++WGALLGA
Sbjct: 372 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+EL  +A +R+ E++ EN+GYYVL+SNIY+N    +GV  +R + +++ LKK P
Sbjct: 432 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 491

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S +E+  +V  F  G+R H + ++IY  L  L A +      P+K     + EE  K+
Sbjct: 492 GCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK----DNREESNKD 547

Query: 632 HI--LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
               +  HSE+LA+AFG++++   + + I KNLR+C DCH + K +S+I  R++ VRD+ 
Sbjct: 548 GFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDAT 607

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF++G CSC DYW
Sbjct: 608 RFHHFRNGSCSCKDYW 623



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 248/473 (52%), Gaps = 15/473 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  G RP+ +TFP  LK+C  L   + G + H  + K+G  ++ FV   L+ MYC
Sbjct: 36  LYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYC 95

Query: 75  RFGLANVARKLFDD--MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           +  L + ARK+F++     + +  +NA++SGY  +    EA+ +  +M  EGV ++ +T+
Sbjct: 96  KGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTL 155

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
             ++P C    N+  G  +H   +K+G + ++ V N  I MY K G + +A ++FD+M  
Sbjct: 156 LGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPV 215

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           + ++SWN++++ Y Q+         +  M   G+ PD +TLV + S  A L        V
Sbjct: 216 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 275

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
             F ++   F  +  + NA+++MYA+ G +  A AVF+G+P + ++SW  +I GY  +G 
Sbjct: 276 E-FKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 334

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVA 371
              A+++F+ M   + I P+   +V +L A SH G   QG++    + +N  L       
Sbjct: 335 GEIAVQLFKEMIR-SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 393

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           +C+VD+ G+ GR+ +A +L   +P +     W A++    IH   + A   F ++++  +
Sbjct: 394 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--L 451

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR 482
            P++I +  LL+    +   S+G     +M +E  +K   K  GC  V+L GR
Sbjct: 452 EPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK---KDPGCSYVELKGR 501



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 23/375 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           ++S YV   + SEAV  F Q     G+  +  T   ++ AC    NL  G  +HCS LK 
Sbjct: 123 LVSGYVSNSKCSEAVLLFRQMN-EEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 181

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV V    + MY + G  N A+KLFD+MPV+   SWNAM+SGY Q+G A   L++ 
Sbjct: 182 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 241

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M + GV  DP+T+  +L  CA       G  +   I   G   N F++N LINMYA+ 
Sbjct: 242 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARC 301

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD M ER +VSW +II  Y        A   F  M ++GI+PD    V + 
Sbjct: 302 GNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 361

Query: 238 SIV--AQLNDCRNSRSVHGF-IMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLP 293
           S    A L D    + +  F +M+R + +E      + +VD+  + G +  A  + E +P
Sbjct: 362 SACSHAGLTD----QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 417

Query: 294 VK-DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHV---- 346
           +K D   W  L+          + +E+ ++  E   E+ P N G YV +   YS+     
Sbjct: 418 IKPDGAVWGALLGACK----IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSK 473

Query: 347 GALRQGIKIHARVIK 361
           G LR  I +  + +K
Sbjct: 474 GVLRIRIMMKEKKLK 488


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 368/639 (57%), Gaps = 37/639 (5%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           N   +  C  G+  EA     E  L  +  +P   +++L  C    ++  G  +H  I  
Sbjct: 42  NEQFATLCSKGHIREAF----ESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFT 97

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            G   + F+SN+L+N+Y+KFG ++ A+ +FD+M  R+++S N +I AY    +  +A   
Sbjct: 98  SGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNL 157

Query: 218 F-------------------------------TTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           F                               + M +    PD  +L S+    A L   
Sbjct: 158 FDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGAL 217

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              + VH ++M+ G F  ++++G ++  MY K G ++    V   +P   +++WNTL++G
Sbjct: 218 LAGQQVHAYVMKCG-FECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSG 276

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
            AQ G     ++ + MM+      P++ T+VS++ + S +  L QG +IHA  +K     
Sbjct: 277 KAQKGYFEGVLDQYCMMKMAG-FRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASS 335

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +V V + LV MY +CG + D++  F +      V W+++I+ +G HGQG++A+  F +M 
Sbjct: 336 EVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEME 395

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
            E +  + ITF+SLL ACSH GL  +G   F MM +++G+K  L+HY C+VDL GR+G L
Sbjct: 396 QENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCL 455

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A   I++MPV+ DA IW  LL AC+IH N E+    +D +  +D ++   YVL++NIY
Sbjct: 456 EEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIY 515

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           ++  +W+ V EVR   +D+ +KK PG S +EV N+V  F+ G+  HPK+ +I   L  LT
Sbjct: 516 SSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELT 575

Query: 607 AKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCG 666
           +++K  GYVPD S VL D++ +EKE IL  HSE+LAIAF ++++P   PI++ KNLRVC 
Sbjct: 576 SEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCS 635

Query: 667 DCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           DCH   K+IS+I + EIIVRDS+RFHHFK+G CSCGDYW
Sbjct: 636 DCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 249/513 (48%), Gaps = 61/513 (11%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTF-----------PPVLKAC---RNLVDGKKIHCSV 54
           GR S+  + F        +R  F +F             +L+AC   +++  GK++H  +
Sbjct: 36  GRFSDGNEQFATLCSKGHIREAFESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLI 95

Query: 55  LKLGFEWDVFVAASLLHMYCRFG-----------------------------LANV--AR 83
              G   D F++  LL++Y +FG                             + N+  A+
Sbjct: 96  FTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAK 155

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            LFD+MP R+  +WNAM++G  +     EAL +   M       D  ++ S+L  CA   
Sbjct: 156 NLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLG 215

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +L+G  +H Y++K G E NL V  +L +MY K G M    RV + M +  +V+WN++++
Sbjct: 216 ALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMS 275

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
              Q          +  M+ AG +PD +T VS+ S  ++L      + +H   ++ G   
Sbjct: 276 GKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAG-AS 334

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            +V + +++V MY++ G +  +   F     +DV+ W+++I  Y  +G   EAI++F  M
Sbjct: 335 SEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEM 394

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCG 382
           E+ N +  N+ T++S+L A SH G   +G+ +   ++K   L   +   TCLVD+ G+ G
Sbjct: 395 EQEN-LPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSG 453

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD------HI 435
            +++A ++   +P ++ ++ W  ++S   IH   + A    R++ DE +R D      ++
Sbjct: 454 CLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIA----RRVADEVLRIDPQDSASYV 509

Query: 436 TFVSLLTACSHSGLVSEGQRYF--HMMQEEFGI 466
              ++ ++ +    VSE +R     M+++E GI
Sbjct: 510 LLANIYSSANRWQNVSEVRRAMKDKMVKKEPGI 542


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 334/554 (60%), Gaps = 36/554 (6%)

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQ 242
           ++ DQ  +  + + NS+I AY +S  P  +  F+  + Q+   + PD  T   L    AQ
Sbjct: 64  QILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ 123

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS------------------ 284
            + C    +VHG +++ G F  D  + + ++ MYA++  ++S                  
Sbjct: 124 -SACEAGPAVHGALIKHG-FEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTT 181

Query: 285 ---ACA----------VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
              ACA          +F+ +P +D +SWN +I GYAQ G + EA+ +F++M+  + +  
Sbjct: 182 MVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQ-MDGVKV 240

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N+ + +S++ A +H+GAL QG   HA + KN +   V + T LVDMY KCG +D A+ +F
Sbjct: 241 NEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVF 300

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
           +++   +   W+  I    ++G G K L  F  M  EG+ P+ ITF+S+L  CS  G V 
Sbjct: 301 WEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVD 360

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           EG+ +F  M+ + GI+P L+HYGCMVDL+GRAG L  A NFI  MP++P A  WGALL A
Sbjct: 361 EGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNA 420

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           CR++ NMELG  AS +L EV+ +N G YV +SNIYA+ G W+ V  VR   +  G+ K P
Sbjct: 421 CRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLP 480

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S +EVN +V  F++G+++HP Y+ I      ++ ++K  GYV   + VL D+EE+EKE
Sbjct: 481 GCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKE 540

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
             L  HSE++AIAFG+ S     PI+I KNLR+C DCH+ +K IS+I EREIIVRD NRF
Sbjct: 541 DALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRF 600

Query: 692 HHFKDGICSCGDYW 705
           HHFKDG CSC D+W
Sbjct: 601 HHFKDGECSCKDFW 614



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 211/477 (44%), Gaps = 57/477 (11%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYI 155
           N+MI  Y +S    ++    +++      M P   T   ++  CA+S    +G  +H  +
Sbjct: 78  NSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSA-CEAGPAVHGAL 136

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRV----------------------------- 186
           +KHG E++  V + LI MYA+   +    RV                             
Sbjct: 137 IKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFAR 196

Query: 187 --FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
             FD M +RD VSWN++IA Y Q      A   F  MQ  G++ + ++++S+ +    L 
Sbjct: 197 NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLG 256

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                +  H +I +    M  V +G A+VDMY K G ++ A  VF  +  K+V +W+T I
Sbjct: 257 ALDQGKWAHAYIEKNKIQM-TVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAI 315

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            G A NG   + +E+F  M+    I PN+ T++S+L   S VG + +G + H   +K   
Sbjct: 316 GGLAMNGYGQKCLELFSFMKH-EGIAPNEITFISVLKGCSVVGFVDEG-RSHFDSMKRDH 373

Query: 365 CFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNF 421
             +  +    C+VD+YG+ GR+++A++    +P +  +  W A+++   ++   +    F
Sbjct: 374 GIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELG-EF 432

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
             + L E    +H  +VSL    + +G           M+ E GI    K  GC V    
Sbjct: 433 ASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAE-GIS---KLPGCSVMEVN 488

Query: 482 RAGHLGMAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
                G  H F       P      ++WG +    ++ G +   A  +  LF+++ E
Sbjct: 489 -----GEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYV---ASTNSVLFDIEEE 537



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 169/373 (45%), Gaps = 52/373 (13%)

Query: 18  FYQFTLTSG--LRPDFYTFPPVLKACRNLV--DGKKIHCSVLKLGFEWDVFVAASLLHMY 73
           FY   L S   + PD YTF  +++ C       G  +H +++K GFE+D  V + L+ MY
Sbjct: 96  FYNKILQSNDVMSPDNYTFNFLVRTCAQSACEAGPAVHGALIKHGFEYDPHVESGLIFMY 155

Query: 74  CRF-------------------------------GLANVARKLFDDMPVRDSGSWNAMIS 102
                                             G    AR LFD MP RD  SWNAMI+
Sbjct: 156 AEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIA 215

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           GY Q G + EAL++   M+++GV ++ +++ S++  C     +  G   H YI K+ ++ 
Sbjct: 216 GYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQM 275

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
            + +   L++MY K G +  AL+VF +M E++V +W++ I     +         F+ M+
Sbjct: 276 TVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMK 335

Query: 223 QAGIQPDLLTLVSL---TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAK 278
             GI P+ +T +S+    S+V  +++ R+    H   M+R   +E  +     +VD+Y +
Sbjct: 336 HEGIAPNEITFISVLKGCSVVGFVDEGRS----HFDSMKRDHGIEPRLEHYGCMVDLYGR 391

Query: 279 LGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQG 334
            G +  A      +P+K    +W  L+     Y    L   A      +E       N G
Sbjct: 392 AGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVE-----GKNHG 446

Query: 335 TYVSILPAYSHVG 347
            YVS+   Y+  G
Sbjct: 447 AYVSLSNIYADTG 459



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y + G+  EA++ F +     G++ +  +   V+ AC +L     GK  H  + K 
Sbjct: 213 MIAGYAQRGQSREALNLF-KLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKN 271

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  V +  +L+ MY + G  + A K+F +M  ++  +W+  I G   +G   + L++ 
Sbjct: 272 KIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELF 331

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYA 175
             M+ EG++ + IT  S+L  C+    +  G   H   +K  HG+E  L     ++++Y 
Sbjct: 332 SFMKHEGIAPNEITFISVLKGCSVVGFVDEG-RSHFDSMKRDHGIEPRLEHYGCMVDLYG 390

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  AL   + M ++    +W +++ A
Sbjct: 391 RAGRLEEALNFINTMPLKPHAGAWGALLNA 420


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/526 (41%), Positives = 324/526 (61%), Gaps = 5/526 (0%)

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM--QQAGIQPD-LLTLVSLTSI 239
           A  +FD+M  RD  SW++I++A+ +   P  A   +  M  +  G   D   T  S  + 
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAA 171

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
                  R  R +H  ++RRG    D ++ +A+ DMYAK G ++ A +VF+ +PV+DV+S
Sbjct: 172 ATAARCARAGRELHCHVVRRG-IDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVS 230

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
           W  ++  Y   G   E   +F  M     I PN+ TY  +L A +   + + G ++H R+
Sbjct: 231 WTAMLDRYFDAGRDGEGFRLFVRMMRSG-ILPNEFTYAGVLRACAEFTSEKLGKQVHGRM 289

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
            K+      F  + LV MY K G +  AM +F  +P+   V W A+IS +  +GQ D+AL
Sbjct: 290 AKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEAL 349

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
           + F  +L  G RPDH+TFV +L+AC+H+GLV +G   FH +++++GI+    HY C++DL
Sbjct: 350 HCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDL 409

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
             R+G    A + I  MPV+P+  +W +LLG CRIH N+ L   A++ LFE++ EN   Y
Sbjct: 410 LSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATY 469

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           V ++NIYA+VG ++ V+ +R     RG+ K P  S IEV  +V +F  G+++HP+ E+IY
Sbjct: 470 VTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIY 529

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
             L+ L  KM+  GYV D  FVL DVE+++K+  +  HSERLA+AFGII++P  SPI++F
Sbjct: 530 ALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVF 589

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLR+CGDCH   K IS+I +REIIVRDSNRFHHFK+G CSC DYW
Sbjct: 590 KNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 192/391 (49%), Gaps = 11/391 (2%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE--GVSMD-PITVA 133
           GLA+ AR LFD MP RD  SW+A++S + + G    AL I   M  E  G   D   T +
Sbjct: 108 GLAS-ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTAS 166

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S L     +    +G  +H ++V+ G++ +  V + L +MYAKFG +  A  VFD+M  R
Sbjct: 167 SALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVR 226

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DVVSW +++  Y  +         F  M ++GI P+  T   +    A+    +  + VH
Sbjct: 227 DVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVH 286

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G  M +    +    G+A+V MY+K G + +A  VF G+P  D++SW  +I+GYAQNG  
Sbjct: 287 GR-MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQP 345

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLCFDVFVAT 372
            EA+  F M+       P+  T+V +L A +H G + +G+ I H+   K  +        
Sbjct: 346 DEALHCFDMLLSSG-FRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYA 404

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           C++D+  + G  + A  +   +P + +   W +++    IH     A      + +  + 
Sbjct: 405 CVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFE--IE 462

Query: 432 PDH-ITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           P++  T+V+L    +  GL  E +     M+
Sbjct: 463 PENPATYVTLANIYASVGLFDEVENMRRTME 493



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 11/306 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G+++HC V++ G + D  V ++L  MY +FG  + AR +FD MPVRD  SW AM+  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +G   E   +   M   G+  +  T A +L  CA   +   G  +H  + K     + F 
Sbjct: 241 AGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFA 300

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            + L++MY+K+G M  A+RVF  M + D+VSW ++I+ Y Q+  P  A   F  +  +G 
Sbjct: 301 GSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGF 360

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD +T V + S  A          +   I  +            V+D+ ++ G+   A 
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 287 AVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILP 341
            +   +PVK +   W +L+ G   +    LA  A E         EI P N  TYV++  
Sbjct: 421 DMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEAL------FEIEPENPATYVTLAN 474

Query: 342 AYSHVG 347
            Y+ VG
Sbjct: 475 IYASVG 480



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 6/207 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y   GR  E    F +  + SG+ P+ +T+  VL+AC        GK++H  + K 
Sbjct: 234 MLDRYFDAGRDGEGFRLFVRM-MRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKS 292

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                 F  ++L+HMY ++G    A ++F  MP  D  SW AMISGY Q+G   EAL   
Sbjct: 293 RTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCF 352

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
           D +   G   D +T   +L  CA +  +  GL + H    K+G+E        +I++ ++
Sbjct: 353 DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSR 412

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSII 202
            G+   A  + + M ++ +   W S++
Sbjct: 413 SGLFERAEDMINTMPVKPNKFLWASLL 439



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVD-GKKIHCSVL-K 56
           MIS Y + G+  EA+ CF    L+SG RPD  TF  VL AC +  LVD G  I  S+  K
Sbjct: 335 MISGYAQNGQPDEALHCF-DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDK 393

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            G E      A ++ +  R GL   A  + + MPV+ +    A + G C+
Sbjct: 394 YGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCR 443


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/497 (41%), Positives = 315/497 (63%), Gaps = 2/497 (0%)

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
           ND   A   F+ + ++G + D +TL +       L      + +H   ++ G F  D+ +
Sbjct: 9   NDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG-FDSDLHV 67

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            + ++DMY K G + +A  VF  +   D ++W ++I+G   NG   +A+ ++  M + + 
Sbjct: 68  NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ-SR 126

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P++ T+ +++ A S V AL QG ++HA VIK     D FV T LVDMY KCG I+DA 
Sbjct: 127 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 186

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF ++   +   WNA++     HG  ++A+N F+ M   G+ PD ++F+ +L+ACSH+G
Sbjct: 187 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 246

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           L SE   Y H M  ++GI+P ++HY C+VD  GRAG +  A   I+ MP +  ASI  AL
Sbjct: 247 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 306

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LGACRI G++E G   + RLF ++  +   YVL+SNIYA   +W+ V + R + + + +K
Sbjct: 307 LGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVK 366

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG+S I+V N + +F   +R+HP+ + IYD++  +   ++  GYVPD  FVL DVE++
Sbjct: 367 KDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDE 426

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE  L  HSE+LAIA+G+IS+P  + I++ KNLRVCGDCHN  K+IS++ EREI++RD+
Sbjct: 427 EKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDA 486

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHF+DG+CSCGDYW
Sbjct: 487 NRFHHFRDGVCSCGDYW 503



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 157/305 (51%), Gaps = 3/305 (0%)

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           M+ GY    +  +AL++   +   G   D IT+A+    C     +  G  IH + +K G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
            + +L V++ +++MY K G M +A  VF+ +   D V+W S+I+    + +   A   + 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            M+Q+ + PD  T  +L    + +      R +H  +++    + D  +G ++VDMYAK 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC-VSDPFVGTSLVDMYAKC 179

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G I  A  +F+ + V+++  WN ++ G AQ+G A EA+ +F+ M+  + I P++ +++ I
Sbjct: 180 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS-HGIEPDRVSFIGI 238

Query: 340 LPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           L A SH G   +  + +H+      +  ++   +CLVD  G+ G + +A  +   +P  +
Sbjct: 239 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 298

Query: 399 SVPWN 403
           S   N
Sbjct: 299 SASIN 303



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            +     SG + D  T     KAC  LV    GK+IH   +K GF+ D+ V + +L MY 
Sbjct: 17  LFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYI 76

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    A  +F+ +   D  +W +MISG   +GN  +AL I   MR   V  D  T A+
Sbjct: 77  KCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFAT 136

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++   +    +  G  +H  ++K     + FV  +L++MYAK G +  A R+F +M  R+
Sbjct: 137 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 196

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS-RSVH 253
           +  WN+++    Q  +   A   F +M+  GI+PD ++ + + S  +       +   +H
Sbjct: 197 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 256

Query: 254 GFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              M   + +E  I   + +VD   + G++  A  V E +P K   S N  + G
Sbjct: 257 S--MPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 308


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 344/559 (61%), Gaps = 8/559 (1%)

Query: 151 IHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           IH  +++ G  E N  ++  L N+    G M +A +VFD+M +  +  WN++   Y ++ 
Sbjct: 30  IHAIVLRTGFSEKNSLLTQLLENLVV-IGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
            P  +   +  M+  G++PD  T   +   ++QL D     ++H  +++ G F    I+ 
Sbjct: 89  LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYG-FGCLGIVA 147

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC-NE 328
             +V MY K G ++SA  +FE + VKD+++WN  +    Q G ++ A+E F  M  C + 
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM--CADA 205

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           +  +  T VS+L A   +G+L  G +I+ R  K  +  ++ V    +DM+ KCG  + A 
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF ++ + + V W+ +I  + ++G   +AL  F  M +EG+RP+++TF+ +L+ACSH+G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 449 LVSEGQRYFHMMQE--EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           LV+EG+RYF +M +  +  ++P  +HY CMVDL GR+G L  A+ FI+ MPV PD  IWG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALLGAC +H +M LG   +D L E   +   Y+VL+SNIYA  GKW+ VD+VRS  R  G
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
            KK   +SS+E   K+  F  G+++HP+ + IY++L  +  K++ +GYVPD   V  DVE
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
            +EKE  L+ HSE+LAIAFG+I   P  PI++ KNLR C DCH ++KF+S +T  EII+R
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHF++G+CSC ++W
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 187/371 (50%), Gaps = 10/371 (2%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           KKIH  VL+ GF     +   LL      G    AR++FD+M       WN +  GY ++
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               E+L +  +MR  GV  D  T   ++   ++  +   G  +H ++VK+G      V+
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
             L+ MY KFG +  A  +F+ M  +D+V+WN+ +A   Q+ +   A  +F  M    +Q
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            D  T+VS+ S   QL        ++    R+     ++I+ NA +DM+ K G   +A  
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYD-RARKEEIDCNIIVENARLDMHLKCGNTEAARV 266

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHV 346
           +FE +  ++V+SW+T+I GYA NG + EA+ +F  M+  NE + PN  T++ +L A SH 
Sbjct: 267 LFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ--NEGLRPNYVTFLGVLSACSHA 324

Query: 347 GALRQGIKIHARVI----KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           G + +G +  + ++    KN        A C+VD+ G+ G +++A     ++P    +  
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYA-CMVDLLGRSGLLEEAYEFIKKMPVEPDTGI 383

Query: 402 WNAIISCHGIH 412
           W A++    +H
Sbjct: 384 WGALLGACAVH 394



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 149/289 (51%), Gaps = 6/289 (2%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G+RPD +T+P V+KA   L D   G  +H  V+K GF     VA  L+ MY +FG  + A
Sbjct: 104 GVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSA 163

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             LF+ M V+D  +WNA ++   Q+GN+  AL+  ++M  + V  D  TV S+L  C + 
Sbjct: 164 EFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQL 223

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G  I+    K  ++ N+ V N  ++M+ K G    A  +F++M +R+VVSW+++I
Sbjct: 224 GSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMI 283

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG-W 261
             Y  + D   A   FTTMQ  G++P+ +T + + S  +        +     +++    
Sbjct: 284 VGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDK 343

Query: 262 FMEDVIIGNA-VVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYA 308
            +E      A +VD+  + G++  A    + +PV+ D   W  L+   A
Sbjct: 344 NLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACA 392


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/746 (33%), Positives = 401/746 (53%), Gaps = 44/746 (5%)

Query: 1   MISVYVRCGRLSEAVDCF---------------YQFTLTSGLRPDFYTFPPVLKACRNLV 45
           ++S+Y RCGR+ +A   F                   L+   R     F   L A   +V
Sbjct: 109 LVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMAALSGDPRRGLELFRDCLVAVGGMV 168

Query: 46  D-------------------GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D                   G+ +H    K G++    V  +L+ MY + G    A + F
Sbjct: 169 DEATLVTVLPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAF 228

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE---GVSMDPITVASILPVCARSD 143
            + P     SWN M+  Y ++  A  A  +L +M+++    V  D ITV S+LP C+   
Sbjct: 229 PEAP--SVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPT 286

Query: 144 NILSGLLIHLYIVKHGLEF-NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            +     +H + V+ GL+  +  V N L+  Y + G + HA RVF  +  + V SWN++I
Sbjct: 287 ELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLI 346

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           +A+ Q N       F       G++PD  ++ SL    A      + ++ HGFI+R G  
Sbjct: 347 SAHAQQNTAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNG-L 405

Query: 263 MEDVIIGNAVVDMYAKLGIINS-ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
             D +I  +++  Y +       A  +F+ +  K  + W  +I+GY+QNGL  E++++F+
Sbjct: 406 ERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFR 465

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M+       +  +  S L A S + ++R G ++H   +K  LC D F+++ L+DMY KC
Sbjct: 466 EMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKC 525

Query: 382 GRIDDAMSLFYQV-PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440
           G ++DA + F ++  R + V W A+I+ + ++G G +A+  + +M  EG+ PD  T++ L
Sbjct: 526 GFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGL 585

Query: 441 LTACSHSGLVSEGQRYF-HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
           L AC H+G++ EG R+F  M      I+  L+HY C++ +  RAG    A   +  MP  
Sbjct: 586 LMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQE 645

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559
           PDA I  ++L AC IHG  ELG+  ++RL E++ +   +YVL SN+YA   +W+ + +VR
Sbjct: 646 PDAKILSSVLSACHIHGEAELGSDVAERLLELEPDKAEHYVLASNMYAGSRRWDDMRKVR 705

Query: 560 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 619
            + RD G+ K PG S I+V  KV  F  G   HP+ E++    R+L  +++ +GYVPD +
Sbjct: 706 KMLRDAGIAKEPGCSWIDVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVPDTT 765

Query: 620 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 679
            VL ++EE+EK   L  HSE+ A+ FG++ +   + +++FKN+R+C DCHN  + IS++T
Sbjct: 766 VVLHELEEEEKVEALWWHSEKQAVTFGLLRTATPATVRVFKNIRMCKDCHNAARLISKVT 825

Query: 680 EREIIVRDSNRFHHFKDGICSCGDYW 705
            R+I+VRD  RFHHF+ GICSCGDYW
Sbjct: 826 GRDIVVRDKKRFHHFRGGICSCGDYW 851



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 237/507 (46%), Gaps = 21/507 (4%)

Query: 24  TSGLRPDFYTFPPVLKACRNL-----VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           + G+ PD +T PP  ++C  L       G+++H    KLG   D FV  SL+ MY R G 
Sbjct: 59  SEGIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGR 118

Query: 79  ANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDIL-DEMRLEGVSMDPITVASI 135
              A K+F  +P   R+  SWNA+++    SG+    L++  D +   G  +D  T+ ++
Sbjct: 119 VEDAEKVFGGIPDAARNIVSWNALMAAL--SGDPRRGLELFRDCLVAVGGMVDEATLVTV 176

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           LP+CA      +G  +H    K G +    V N L++MYAK G +  A R F +     V
Sbjct: 177 LPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEAP--SV 234

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQ---QAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           VSWN ++ AY ++ +   A G    MQ      +  D +T++S+    +   +    R +
Sbjct: 235 VSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLREL 294

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H F +RRG       + NA+V  Y + G +  A  VF  +  K V SWNTLI+ +AQ   
Sbjct: 295 HAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQNT 354

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           A+ AIE+F  M     + P+  +  S+L A +    L      H  +++N L  D  +  
Sbjct: 355 AA-AIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRA 413

Query: 373 CLVDMYGKCGRIDD-AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-EGV 430
            L+  Y +C R +  A  LF  +     V W A+IS +  +G   ++L  FR+M   EG 
Sbjct: 414 SLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGH 473

Query: 431 RPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
               I+  S L ACS    V  G+  +   ++ +    P L     ++D++ + G +  A
Sbjct: 474 CSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLS--SSLIDMYSKCGFVEDA 531

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHG 516
             F   +  R     W A++    ++G
Sbjct: 532 RTFFDRLKARDAKVSWTAMITGYAVNG 558



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 20/233 (8%)

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPA-----YSHVGALRQGI 353
           WN L+  +++ G  ++A+ +   +   +E I P++ T   + PA     +  VGA   G 
Sbjct: 32  WNALLADHSRAGRHADALALLPPLLAASEGIAPDRFT---LPPAARSCGFLRVGAAAAGR 88

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGI 411
           ++HA   K  L  D FV   LV MYG+CGR++DA  +F  +P ++   V WNA+++   +
Sbjct: 89  QVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMA--AL 146

Query: 412 HGQGDKALNFFRQ-MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            G   + L  FR  ++  G   D  T V++L  C+  G  SE  R  H +  + G     
Sbjct: 147 SGDPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGW-SETGRAVHGLAAKSGWDAPA 205

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           +    +VD++ + G L  A    +  P  P    W  +LGA     N E GA 
Sbjct: 206 RVGNALVDMYAKCGELADAE---RAFPEAPSVVSWNVMLGA--YTRNREAGAA 253


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/678 (35%), Positives = 373/678 (55%), Gaps = 16/678 (2%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  G ++H ++ K+GF  D  +  +L+ MY + G  ++A ++F  M  R+  SW A++ 
Sbjct: 19  SLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMV 78

Query: 103 GYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           G+ + G+A   L +L EMR     + +  T+++ L  C    +  +G+ IH   V+ G +
Sbjct: 79  GFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQ 138

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
            +  V+++L+ +Y+K G +  A RVFD   +   + +WN++++ Y  +     A   F  
Sbjct: 139 EHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFRE 198

Query: 221 MQ--QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYA 277
           M+  +   QPD  T  SL    + L   R    VH  +   G+    + I+  A+VDMY 
Sbjct: 199 MRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYV 258

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K   +  A  VFE L  K+VI W  ++ G+AQ G  +EA+E+F+         P+     
Sbjct: 259 KCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSG-ARPDSHVLS 317

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S++   +    + QG ++H   IK+    DV     +VDMY KCG  D+A  +F ++   
Sbjct: 318 SVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAP 377

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           + V W  +++  G HG G +A+  F +M   GV PD +T+++LL+ACSH+GLV E +RYF
Sbjct: 378 NVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYF 437

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             ++ +  ++P  +HY CMVDL GRAG L  A + I+ MP+ P   +W  LL ACR+H +
Sbjct: 438 SCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKD 497

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           + +G  A D L  +D +N   YV +SN+ A  G+W    +VR   R RGLKK  G S +E
Sbjct: 498 VAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 557

Query: 578 VNNKVDIFYTGN---RTHPKYEKIYDELRNLTAKMK-SLGY-VPDKSFVLQDVEEDEKEH 632
           V  +V  FY G     THP+   I   LR++  +M+  LGY   D  F L DV+E+ +  
Sbjct: 558 VGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAE 617

Query: 633 ILTSHSERLAIAF-----GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            L +HSERLA+       G+       PI+++KNLRVCGDCH + K +S +  R ++VRD
Sbjct: 618 SLRAHSERLAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRD 677

Query: 688 SNRFHHFKDGICSCGDYW 705
           +NRFH F+ G CSC DYW
Sbjct: 678 ANRFHRFEHGSCSCKDYW 695



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 207/427 (48%), Gaps = 26/427 (6%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +A +L   ARS ++  G+ +H  I K G   +  + NNLI+MY K G +  A  VF  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSR 250
           +R+VVSW +++  + +  D          M+ A    P+  TL +       + D     
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITGYAQ 309
            +HG  +R G+   DV + +++V +Y+K G I  A  VF+G  +   + +WN +++GYA 
Sbjct: 127 GIHGLCVRAGYQEHDV-VASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAH 185

Query: 310 NGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCF 366
            G   +A+ VF +M     +  P++ T+ S+L A S +GA R+G ++HA +  +      
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +  +A  LVDMY KC R+  AM +F ++ R + + W A++  H   GQ  +AL  FR+  
Sbjct: 246 NAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFW 305

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK----PHLKHYGCMVDLFGR 482
             G RPD     S++   +   LV +G R  H     +GIK      +     +VD++ +
Sbjct: 306 RSGARPDSHVLSSVVGVLADFALVEQG-RQVHC----YGIKDPTGTDVSAGNSIVDMYLK 360

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE------VDSENV 536
            G    A    + M   P+   W  ++     HG +   AVA   LFE      V+ + V
Sbjct: 361 CGLPDEAERMFREMRA-PNVVSWTTMVNGLGKHG-LGREAVA---LFEEMRAGGVEPDEV 415

Query: 537 GYYVLMS 543
            Y  L+S
Sbjct: 416 TYLALLS 422



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 165/365 (45%), Gaps = 15/365 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGL-RPDFYTFPPVLKACRNL---VDGKKIHCSVLK 56
           M+S Y   G   +A+  F +     G  +PD +TF  +LKAC  L    +G ++H ++  
Sbjct: 179 MVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTA 238

Query: 57  LGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
            GF    +  +A +L+ MY +     VA ++F+ +  ++   W A++ G+ Q G   EAL
Sbjct: 239 SGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEAL 298

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           ++       G   D   ++S++ V A    +  G  +H Y +K     ++   N++++MY
Sbjct: 299 ELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMY 358

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G+   A R+F +M   +VVSW +++    +      A   F  M+  G++PD +T +
Sbjct: 359 LKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYL 418

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           +L S  +        R     I R             +VD+  + G +  A  +   +P+
Sbjct: 419 ALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM 478

Query: 295 KDVIS-WNTLITG---YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +  +  W TL++    +    +  EA +V   M+  N +N     YV++    +  G  R
Sbjct: 479 EPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVN-----YVTLSNVLAEAGEWR 533

Query: 351 QGIKI 355
           +  K+
Sbjct: 534 ECHKV 538



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 2/179 (1%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
            Q     +L A +   +LR G+++H  + K     D  +   L+DMY KCG +D A  +F
Sbjct: 3   RQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVF 62

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLV 450
             +   + V W A++     HG     L    +M       P+  T  + L AC   G  
Sbjct: 63  GGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDT 122

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + G    H +    G + H      +V ++ + G +G A        +    + W A++
Sbjct: 123 AAGV-GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 338/545 (62%), Gaps = 3/545 (0%)

Query: 163 NLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           N F ++NL+   A   +G M +A  +F Q+ +     +N++I  Y    +   A   +  
Sbjct: 16  NSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYE 75

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M + G++ D  T  +L    A L        +HG+I +RG    D+ + N++++MY K G
Sbjct: 76  MLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRG-LEGDLFVQNSLINMYGKCG 134

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            I  +C+VFE +  +DV SW+ +I  +A  G+ SE + VF  M       P +   VS+L
Sbjct: 135 KIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVL 194

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A +H+GAL  G   H  +++N    +V V T L+DMY KCG I+  +SLF ++ + + +
Sbjct: 195 SACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQL 254

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            ++ +I+   +HG+G +AL  F  ML+EG++PD + ++ +L+AC+H+GLV EG + F+ M
Sbjct: 255 SYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRM 314

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
           + E GI+P ++HYGC+V L GRAG L  A   I++MP++P+  +W  LL AC+ H N+E+
Sbjct: 315 KLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEI 374

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G +A+  L E++S N G YV++SN+YA   +WE V ++R+    +G  +TPG+S ++V  
Sbjct: 375 GEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVER 434

Query: 581 KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
           K+  F + + +HP+ + +Y+ +  +  ++K  GY PD S VL DV+E+EK   L +HS++
Sbjct: 435 KIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQK 494

Query: 641 LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700
           LA+AF +I +   +PI+I +NLR+C DCH +TK IS I +REI VRD NRFHHFKDG CS
Sbjct: 495 LAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCS 554

Query: 701 CGDYW 705
           C DYW
Sbjct: 555 CRDYW 559



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 188/372 (50%), Gaps = 14/372 (3%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCR---FGLANVARKLFDDMPVRDSGSWNAMISGY 104
           K++H  VLK    W+    AS L   C    +G  + A  +F  +    +  +N MI GY
Sbjct: 5   KQVHAQVLK----WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGY 60

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
               N   AL +  EM   GV  D  T  ++   CA   +I  G+ IH YI K GLE +L
Sbjct: 61  VNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDL 120

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV N+LINMY K G +  +  VF+ M  RDV SW++IIAA+            F  M + 
Sbjct: 121 FVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSRE 180

Query: 225 G-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           G  +P+   LVS+ S    L      R  H  ++R    M +VI+  +++DMY K G I 
Sbjct: 181 GSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREM-NVIVQTSLIDMYVKCGCIE 239

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPA 342
              ++F+ +  K+ +S++ +ITG A +G   EA++VF  M+EE   + P+   Y+ +L A
Sbjct: 240 KGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEE--GLKPDDVVYLGVLSA 297

Query: 343 YSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            +H G + +G++   R+ +++ +   +    C+V + G+ G ++ A+     +P + + V
Sbjct: 298 CNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEV 357

Query: 401 PWNAIISCHGIH 412
            W  ++S    H
Sbjct: 358 VWRGLLSACKFH 369



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 176/377 (46%), Gaps = 28/377 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  YV    +  A+  +Y+  L  G+  D +T+P + KAC   R++ +G +IH  + K 
Sbjct: 56  MIRGYVNVMNMENALFLYYEM-LERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKR 114

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D+FV  SL++MY + G   ++  +F+ M  RD  SW+A+I+ +   G   E L + 
Sbjct: 115 GLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVF 174

Query: 118 DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM  EG    +   + S+L  C     +  G   H+ ++++  E N+ V  +LI+MY K
Sbjct: 175 GEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVK 234

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD------L 230
            G +   L +F +M++++ +S++ +I         + A   F+ M + G++PD      +
Sbjct: 235 CGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGV 294

Query: 231 LTLVSLTSIVAQLNDCRNSRSV-HGFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAV 288
           L+  +   +V +   C N   + HG        +E  I     +V +  + G++N A   
Sbjct: 295 LSACNHAGLVDEGLQCFNRMKLEHG--------IEPTIQHYGCIVHLMGRAGMLNKALEH 346

Query: 289 FEGLPVK-DVISWNTLITG--YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
              +P+K + + W  L++   +  N    E     + + E N  NP  G YV +   Y+ 
Sbjct: 347 IRSMPIKPNEVVWRGLLSACKFHHNLEIGEI--AAKSLGELNSSNP--GDYVVLSNMYAR 402

Query: 346 VGALRQGIKIHARVIKN 362
                   KI   + + 
Sbjct: 403 AKRWEDVAKIRTEMARK 419


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/695 (34%), Positives = 383/695 (55%), Gaps = 26/695 (3%)

Query: 25  SGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +G+  D +++   L AC    +L  G+ +H   +  G    VFV+ SL+ MY + G    
Sbjct: 103 AGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGE 162

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA- 140
           AR++FD    RD  SWN+++SGY ++G   E + +   MR  G+ ++   + S++  C+ 
Sbjct: 163 ARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSG 222

Query: 141 RSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           R D  +     +H  ++K GL+ ++F+ + +I+MYAK G +  A  +F  + E +VV +N
Sbjct: 223 RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFN 282

Query: 200 SIIAAYEQSNDPI------TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           ++IA + ++   I       A   ++ +Q  G+QP   T  S+             + +H
Sbjct: 283 TMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIH 342

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G +++   F ED  IG+A++D+Y   G +      F   P  D+++W  +++G  QN L 
Sbjct: 343 GQVIKY-TFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELH 401

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF--VA 371
            +A+ +F        + P+  T  S++ A + +   R G +I     K+   FD F  + 
Sbjct: 402 EKALSLFHESLGAG-LKPDLFTISSVMNACASLAVARAGEQIQCFATKSG--FDRFTVMG 458

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
              V MY + G +D A   F ++     V W+A+ISCH  HG    AL+FF +M+D  V 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ ITF+ +LTACSH GLV EG RY+  M +++G+ P +KH  C+VDL GRAG L  A  
Sbjct: 519 PNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEA 578

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI N     D  IW +LL +CRIH ++E G + ++R+ E++  +   YV++ N+Y + G+
Sbjct: 579 FISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGE 638

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
                + R L + RG+KK PG S IE+   V  F  G+++HP+   IY +L  + ++++ 
Sbjct: 639 LSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK 698

Query: 612 LGYVPDKSFVLQDVEEDEKEH-ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
           L           D E  ++E  ++  HSE+LA+A G+I  P  +PI++ KNLRVC DCH+
Sbjct: 699 LATT--------DTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHS 750

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             K IS+   REII+RD  RFHHF+DG CSC DYW
Sbjct: 751 TMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 20/492 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+AC +L     +H  + +      +F+  +LL  YCR G    AR+L D+MP R++ S
Sbjct: 17  LLRACTSLRHAAAVHAHIARAHPAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVS 76

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +N +I  Y + G A  +L+ L   R  GV +D  + A+ L  C+R+ ++ +G  +H   +
Sbjct: 77  FNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAI 136

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             GL   +FVSN+L++MY+K G M  A RVFD   ERD VSWNS+++ Y ++        
Sbjct: 137 LDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVR 196

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAVVD 274
            F  M++ G+  +   L S+    +   D     + +VHG +++ G    DV + +A++D
Sbjct: 197 VFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAG-LDSDVFLVSAMID 255

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN------GLASEAIEVFQMMEECNE 328
           MYAK G +  A A+F  +   +V+ +NT+I G+ +        +ASEA+ ++  ++    
Sbjct: 256 MYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQS-RG 314

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P + T+ S+L A +  G L  G +IH +VIK     D F+ + L+D+Y   G ++D  
Sbjct: 315 MQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGF 374

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             F   P+   V W A++S    +   +KAL+ F + L  G++PD  T  S++ AC+   
Sbjct: 375 RCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLA 434

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +   G++      + F  K     +  M    V ++ R+G +  A    Q M    D   
Sbjct: 435 VARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH-DVVS 488

Query: 505 WGALLGACRIHG 516
           W A++     HG
Sbjct: 489 WSAVISCHAQHG 500



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKLGFEWDVFVAA 67
           SEA+   Y    + G++P  +TF  VL+AC NL      GK+IH  V+K  F+ D F+ +
Sbjct: 301 SEALT-LYSEVQSRGMQPTEFTFSSVLRAC-NLAGYLEFGKQIHGQVIKYTFQEDDFIGS 358

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +L+ +Y   G      + F   P  D  +W AM+SG  Q+    +AL +  E    G+  
Sbjct: 359 ALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKP 418

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T++S++  CA      +G  I  +  K G +    + N+ ++MYA+ G +  A R F
Sbjct: 419 DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +M   DVVSW+++I+ + Q      A  FF  M  A + P+ +T + + +
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLT 529



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 5/199 (2%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAA 67
           L E     +  +L +GL+PD +T   V+ AC +L     G++I C   K GF+    +  
Sbjct: 400 LHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGN 459

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           S +HMY R G  + A + F +M   D  SW+A+IS + Q G A +AL   DEM    V  
Sbjct: 460 SCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVP 519

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAKFGMMRHALR- 185
           + IT   +L  C+    +  GL  +  + K +GL   +     ++++  + G +  A   
Sbjct: 520 NEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAF 579

Query: 186 VFDQMMERDVVSWNSIIAA 204
           + + +   D V W S++A+
Sbjct: 580 ISNSIFHADPVIWRSLLAS 598


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/675 (36%), Positives = 370/675 (54%), Gaps = 15/675 (2%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  G ++H +++KLGF  D  +  +L+ MY + G  ++A ++FD MP R+  SW A++ 
Sbjct: 215 SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 274

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           G+   G A E L +  EMR  G S +  T+++ L  C       +G+ IH   V+ G E 
Sbjct: 275 GFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEG 332

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +  V+N+L+ MY+K      A RVFD +  R++ +WNS+I+ Y  +     +   F  MQ
Sbjct: 333 HDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQ 392

Query: 223 QA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF-MEDVIIGNAVVDMYAKLG 280
           +    QPD  T  SL    + L   R    VH  +  RG     + I+  A++D+Y K  
Sbjct: 393 RRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCH 452

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +  A  VF+GL  ++ I W T+I G+AQ G   EA+ +F+       +  +     S++
Sbjct: 453 RLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVV 511

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
             ++    + QG ++H    K     DV VA  LVDMY KCG   +A   F ++P  + V
Sbjct: 512 AVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVV 571

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W A+I+  G HG G +A++ F +M  EGV  D + +++LL+ACSHSGLV E +RYF  +
Sbjct: 572 SWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRI 631

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520
            ++  ++P  +HY CMVDL GRAG L  A   I +MP+ P   +W  LL ACR+H ++ +
Sbjct: 632 CQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAV 691

Query: 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
           G    D L  VD +N   YV++SNI A  G+W     +R   R +GL+K  G S  EV+ 
Sbjct: 692 GREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDK 751

Query: 581 KVDIFY-TGNRTHPKYEKIYDELRNLTAKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHS 638
           +V  FY  G+  HP+   I   LR + A+M+  LGY  D    L DV+E+ +   L  HS
Sbjct: 752 EVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDVDEESRVESLREHS 811

Query: 639 ERLAIAFGIISSPPKSP--------IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 690
           ERLA+   ++               ++++KNLRVCGDCH + K +S +  R ++VRD+NR
Sbjct: 812 ERLAVGLWLLRDGTGDDGGGGGGEVVRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANR 871

Query: 691 FHHFKDGICSCGDYW 705
           FH F++G CSC DYW
Sbjct: 872 FHRFQNGACSCRDYW 886



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 230/442 (52%), Gaps = 23/442 (5%)

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           + A+D+L  + +E   M    +A +L   AR  ++  G+ +H  ++K G   +  ++NNL
Sbjct: 186 LRAIDLLGFLPMERRRM----IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNL 241

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+MYAK G +  A  VFD M ER+VVSW +++  +    +       F  M+ +G  P+ 
Sbjct: 242 IDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNE 301

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL +  ++ A     R    +HG  +R G+   DV + N++V MY+K      A  VF+
Sbjct: 302 FTLSA--TLKACGGGTRAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFD 358

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P +++ +WN++I+GYA  G   +++ VF+ M+  ++  P++ T+ S+L A S +GA R
Sbjct: 359 VIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAR 418

Query: 351 QGIKIHARVIKNCL--CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           +G ++HA +    +    +  +A  L+D+Y KC R+  AM +F  + R +++ W  +I  
Sbjct: 419 EGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVG 478

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIK 467
           H   GQ  +A+  FR+    GVR D     S++   +   LV +G Q + +  +   G+ 
Sbjct: 479 HAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLD 538

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
             + +   +VD++ + G  G A    + MP R   S W A++     HG+   G  A D 
Sbjct: 539 VSVAN--SLVDMYLKCGLTGEAGRRFREMPARNVVS-WTAMINGVGKHGH---GREAID- 591

Query: 528 LFE------VDSENVGYYVLMS 543
           LFE      V+++ V Y  L+S
Sbjct: 592 LFEEMQAEGVEADEVAYLALLS 613



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 20/367 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS Y   G+  +++  F +       +PD +TF  +LKAC  L    +G ++H ++   
Sbjct: 371 MISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR 430

Query: 58  GFE--WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G     +  +A +LL +Y +     VA ++FD +  R++  W  +I G+ Q G   EA+ 
Sbjct: 431 GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMC 490

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +       GV  D   ++S++ V A    +  G  +H Y  K     ++ V+N+L++MY 
Sbjct: 491 LFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYL 550

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD---LLT 232
           K G+   A R F +M  R+VVSW ++I    +      A   F  MQ  G++ D    L 
Sbjct: 551 KCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLA 610

Query: 233 LVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
           L+S  S    +++CR   SR      MR             +VD+  + G +  A  +  
Sbjct: 611 LLSACSHSGLVDECRRYFSRICQDRRMR-----PKAEHYACMVDLLGRAGELREAKELIL 665

Query: 291 GLPVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
            +P++  +  W TL++    +   +   EV  ++   +  NP    YV +    +  G  
Sbjct: 666 SMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPV--NYVMLSNILAEAGEW 723

Query: 350 R--QGIK 354
           R  QGI+
Sbjct: 724 RECQGIR 730


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/620 (38%), Positives = 374/620 (60%), Gaps = 7/620 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVD-GKKIHCSVLKL 57
           M++ Y +CG L   +  F    +   + P+  TF  VL  C +  L+D G ++H  V+  
Sbjct: 210 MLNGYAKCGALDSVIKGFSVMRMDQ-ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVS 268

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G +++  +  SLL MY + G  + A KLF  M   D+ +WN MISGY QSG   E+L   
Sbjct: 269 GVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFF 328

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM   GV  D IT +S+LP  ++ +N+     IH YI++H +  ++F+++ LI+ Y K 
Sbjct: 329 YEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKC 388

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A  +F Q    DVV + ++I+ Y  +   I +   F  + +  I P+ +TLVS+ 
Sbjct: 389 RGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            ++  L   +  R +HGFI+++G F     IG AV+DMYAK G +N A  +FE L  +D+
Sbjct: 449 PVIGILLALKLGRELHGFIIKKG-FDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDI 507

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++IT  AQ+   S AI++F+ M   + I  +  +  + L A +++ +   G  IH 
Sbjct: 508 VSWNSMITRCAQSDNPSAAIDIFRQMG-VSGICYDCVSISAALSACANLPSESFGKAIHG 566

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK+ L  DV+  + L+DMY KCG +  AM++F  +   + V WN+II+  G HG+   
Sbjct: 567 FMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKD 626

Query: 418 ALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +L  F +M+++ G+RPD ITF+ ++++C H G V EG R+F  M E++GI+P  +HY C+
Sbjct: 627 SLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACV 686

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDLFGRAG L  A+  +++MP  PDA +WG LLGACR+H N+EL  VAS +L ++D  N 
Sbjct: 687 VDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNS 746

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVL+SN +AN  +WE V +VRSL ++R ++K PG+S IE+N +  +F +G+  HP+  
Sbjct: 747 GYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESS 806

Query: 597 KIYDELRNLTAKMKSLGYVP 616
            IY  L +L  +++  GY+P
Sbjct: 807 HIYSLLNSLLGELRLEGYIP 826



 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 180/625 (28%), Positives = 319/625 (51%), Gaps = 30/625 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHC---SVLKL 57
           +IS +VR G L++A+  FY   L  G+ PD  TFP ++KAC  L + K I     +V  L
Sbjct: 109 IISSFVRNGLLNQAL-AFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSL 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + + FVA+SL+  Y  +G  +V  KLFD +  +D   WN M++GY + G     +   
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR++ +S + +T   +L VCA    I  G+ +H  +V  G++F   + N+L++MY+K 
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G    A ++F  M   D V+WN +I+ Y QS     +  FF  M  +G+ PD +T  SL 
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             V++  +    + +H +IMR    + D+ + +A++D Y K   ++ A  +F      DV
Sbjct: 348 PSVSKFENLEYCKQIHCYIMRHSISL-DIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           + +  +I+GY  NGL  +++E+F+ + +  +I+PN+ T VSILP    + AL+ G ++H 
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKV-KISPNEITLVSILPVIGILLALKLGRELHG 465

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK        +   ++DMY KCGR++ A  +F ++ +   V WN++I+          
Sbjct: 466 FIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSA 525

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ FRQM   G+  D ++  + L+AC++    S G +  H    +  +   +     ++
Sbjct: 526 AIDIFRQMGVSGICYDCVSISAALSACANLPSESFG-KAIHGFMIKHSLASDVYSESTLI 584

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE---VDSE 534
           D++ + G+L  A N  + M  +   S W +++ AC  HG ++        + E   +  +
Sbjct: 585 DMYAKCGNLKAAMNVFKTMKEKNIVS-WNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPD 643

Query: 535 NVGYYVLMSNIYANVGKW-EGVDEVRSLARDRGLK-KTPGWSSIEVNNKVDIFYTGNRTH 592
            + +  ++S+   +VG   EGV   RS+  D G++ +   ++ +     VD+F    R  
Sbjct: 644 QITFLEIISSC-CHVGDVDEGVRFFRSMTEDYGIQPQQEHYACV-----VDLFGRAGRLT 697

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPD 617
             YE +           KS+ + PD
Sbjct: 698 EAYETV-----------KSMPFPPD 711



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 240/489 (49%), Gaps = 15/489 (3%)

Query: 37  VLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93
           +L+AC N   L  GK++H  ++      D +    +L MY   G  +   K+F  + +R 
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 94  SG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
           S    WN++IS + ++G   +AL    +M   GVS D  T   ++  C    N      +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query: 152 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDP 211
              +   G++ N FV+++LI  Y ++G +    ++FD+++++D V WN ++  Y +    
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
            +    F+ M+   I P+ +T   + S+ A          +HG ++  G   E   I N+
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS-IKNS 279

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           ++ MY+K G  + A  +F  +   D ++WN +I+GY Q+GL  E++  F  M   + + P
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMIS-SGVLP 338

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T+ S+LP+ S    L    +IH  ++++ +  D+F+ + L+D Y KC  +  A ++F
Sbjct: 339 DAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIF 398

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
            Q      V + A+IS +  +G    +L  FR ++   + P+ IT VS+L        + 
Sbjct: 399 SQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALK 458

Query: 452 EGQRYFH--MMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            G R  H  ++++ F  + ++   GC ++D++ + G + +A+   + +  R D   W ++
Sbjct: 459 LG-RELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNLAYEIFERLSKR-DIVSWNSM 513

Query: 509 LGACRIHGN 517
           +  C    N
Sbjct: 514 ITRCAQSDN 522


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 361/616 (58%), Gaps = 10/616 (1%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           S  WN  +    +    ++AL +  +M   G   +  T    L  CA     + G   H 
Sbjct: 5   STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 64

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--ERDVVSWNSIIAAYEQSNDP 211
            I K G  F  FV   LI+MY K  ++ +A +VF++     +  V +N++++ Y  ++  
Sbjct: 65  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 124

Query: 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA 271
             A   F  M + G+  + +TL+ L        +     S+H   ++ G F  DV + N 
Sbjct: 125 SDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG-FDSDVSVVNC 183

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
            + MY K G +N A  +F+ +PVK +ISWN +++GYAQNGLA+  +E+++ M+  N ++P
Sbjct: 184 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD-MNGVHP 242

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           +  T V +L + +++GA   G ++  ++  +    + F+   L++MY +CG +  A ++F
Sbjct: 243 DPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF 302

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
             +P  + V W AII  +G+HG G+ A+  F++M+  G+ PD   FV +L+ACSH+GL  
Sbjct: 303 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 362

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           +G  YF MM+  + ++P  +HY CMVDL GRAG L  A   I++MP++PD ++WGALLGA
Sbjct: 363 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422

Query: 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 571
           C+IH N+EL  +A +R+ E++ EN+GYYVL+SNIY+N    +GV  +R + +++ LKK P
Sbjct: 423 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 482

Query: 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           G S +E+  +V  F  G+R H + ++IY  L  L A +      P+K     + EE  K+
Sbjct: 483 GCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK----DNREESNKD 538

Query: 632 HI--LTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
               +  HSE+LA+AFG++++   + + I KNLR+C DCH + K +S+I  R++ VRD+ 
Sbjct: 539 GFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDAT 598

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHF++G CSC DYW
Sbjct: 599 RFHHFRNGSCSCKDYW 614



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 248/473 (52%), Gaps = 15/473 (3%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            Y   L  G RP+ +TFP  LK+C  L   + G + H  + K+G  ++ FV   L+ MYC
Sbjct: 27  LYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYC 86

Query: 75  RFGLANVARKLFDD--MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           +  L + ARK+F++     + +  +NA++SGY  +    +A+ +  +M  EGV ++ +T+
Sbjct: 87  KGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTL 146

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
             ++P C    N+  G  +H   +K+G + ++ V N  I MY K G + +A ++FD+M  
Sbjct: 147 LGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPV 206

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           + ++SWN++++ Y Q+         +  M   G+ PD +TLV + S  A L        V
Sbjct: 207 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 266

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
             F M+   F  +  + NA+++MYA+ G +  A AVF+G+P + ++SW  +I GY  +G 
Sbjct: 267 E-FKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 325

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVA 371
              A+++F+ M   + I P+   +V +L A SH G   QG++    + +N  L       
Sbjct: 326 GEIAVQLFKEMIR-SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 384

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           +C+VD+ G+ GR+ +A +L   +P +     W A++    IH   + A   F ++++  +
Sbjct: 385 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--L 442

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR 482
            P++I +  LL+    +   S+G     +M +E  +K   K  GC  V+L GR
Sbjct: 443 EPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK---KDPGCSYVELKGR 492



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 185/375 (49%), Gaps = 23/375 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           ++S YV   + S+AV  F Q     G+  +  T   ++ AC    NL  G  +HCS LK 
Sbjct: 114 LVSGYVSNSKCSDAVLLFRQMN-EEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 172

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV V    + MY + G  N A+KLFD+MPV+   SWNAM+SGY Q+G A   L++ 
Sbjct: 173 GFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY 232

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M + GV  DP+T+  +L  CA       G  +   +   G   N F++N LINMYA+ 
Sbjct: 233 RNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARC 292

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFD M ER +VSW +II  Y        A   F  M ++GI+PD    V + 
Sbjct: 293 GNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 352

Query: 238 SIV--AQLNDCRNSRSVHGF-IMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLP 293
           S    A L D    + +  F +M+R + +E      + +VD+  + G +  A  + E +P
Sbjct: 353 SACSHAGLTD----QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMP 408

Query: 294 VK-DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHV---- 346
           +K D   W  L+          + +E+ ++  E   E+ P N G YV +   YS+     
Sbjct: 409 IKPDGAVWGALLGACK----IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSK 464

Query: 347 GALRQGIKIHARVIK 361
           G LR  I +  + +K
Sbjct: 465 GVLRIRIMMKEKKLK 479


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/674 (36%), Positives = 371/674 (55%), Gaps = 47/674 (6%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRD 93
           +   C++L   K+I   + K        V+  LL ++C   L +    AR+LF D+   D
Sbjct: 11  LFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLL-LHCAVTLPDSLHYARRLFLDIRNPD 69

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIH 152
              +N +I G   S     AL +  EMR + V++ D  + A +L   A    + +GL +H
Sbjct: 70  VFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLH 129

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              V +GL+ +LFV   LI+MYA+   +  A +VFD+M+E ++V+WN+I+AA  +     
Sbjct: 130 CLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVK 189

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  M           + +LTS                      W        N +
Sbjct: 190 DAEQVFRCM----------PIRNLTS----------------------W--------NIM 209

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +  Y K G +  A  VF  +P+KD +SW+T+I G+A NG  ++A   F+ +     + PN
Sbjct: 210 LAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRR-EGMRPN 268

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + +   +L A +  GA   G  +H  V K+     + V   L+D Y KCG +D A  +F 
Sbjct: 269 EVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFD 328

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            + R S+V W A+I+   +HG G++A+  F +M +  ++PD ITF+S+L ACSH+GLV  
Sbjct: 329 NMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDL 388

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G  YF  M   +GI+P ++HYGCMVDL+GRAG L  A++F+  MP+ P+  +W  LLGAC
Sbjct: 389 GCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGAC 448

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
            IHGN+ L      +L E+D EN G +VL+SNIYA  GKW+ V  +R     + LKKTPG
Sbjct: 449 SIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPG 508

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKE 631
           WS IEVN  +  F  G + +    + + +LR + ++++   GYVP+   VL D+E +EKE
Sbjct: 509 WSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKE 568

Query: 632 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 691
             ++ HSE+LA+AFG+   P    I++ KNLR+C DCH   K IS++ E EI+VRD +RF
Sbjct: 569 DSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRF 628

Query: 692 HHFKDGICSCGDYW 705
           H F  G CSC DYW
Sbjct: 629 HSFTHGSCSCRDYW 642



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 178/377 (47%), Gaps = 32/377 (8%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKI-HCSVLK 56
           +IS+Y  C  L  A   F +      + P+   +  ++ AC     + D +++  C  ++
Sbjct: 147 LISMYAECACLVFARKVFDEM-----IEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIR 201

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
               W++ +A      Y + G   +AR++F  MP++D  SW+ MI G+  +GN  +A   
Sbjct: 202 NLTSWNIMLAG-----YTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAF 256

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             E+R EG+  + +++  +L  CA++     G ++H ++ K G    + V+N LI+ Y+K
Sbjct: 257 FREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSK 316

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A  VFD M+ R  VSW ++IA          A   F  M+++ I+PD +T +S+
Sbjct: 317 CGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISI 376

Query: 237 TSIVAQLNDCRNSRSV-----HGFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFE 290
                 L  C ++  V     +   M   + +E VI     +VD+Y + G +  A     
Sbjct: 377 ------LYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVC 430

Query: 291 GLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA----YSH 345
            +P+  + I W TL+   + +G    A +V + + E +  N      +S + A    +  
Sbjct: 431 QMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKD 490

Query: 346 VGALRQGIKIHARVIKN 362
           V ALR+ +  H R+ K 
Sbjct: 491 VAALRRSMT-HQRLKKT 506


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/720 (33%), Positives = 392/720 (54%), Gaps = 43/720 (5%)

Query: 28  RPDFY-----TFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           RP F      T    L  C++L   K++H  +L+      +      L         + A
Sbjct: 7   RPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYA 66

Query: 83  RKLFDDM-PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
             LF  + P+ +S  +N+++    +SG     +     +R  G   D I+   IL   ++
Sbjct: 67  LNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK 126

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
              +  G+ +H +  K     + FV   L++MYA  G + +A  VFD+M +RDVV+WN++
Sbjct: 127 VSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR--- 258
           I  Y +      A   F  M+ + + PD + L ++ S   +  + R +R+++ F++    
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDV 246

Query: 259 ---------------------------RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
                                      R   + ++ +  A+V  Y+K G ++ A  +F+ 
Sbjct: 247 RMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQ 306

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
             +KD++ W T+I+ YA++    EA+ VF+ M  C+ I P+  T +S++ A  ++G L +
Sbjct: 307 TEMKDLVCWTTMISAYAESDHPQEALRVFEEMC-CSGIKPDVVTMLSVISACVNLGTLDK 365

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
              +H     N L   + +   L++MY KCG +D A  +F ++P  + V W+++I+   +
Sbjct: 366 AKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAM 425

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           HG+   +L+ F QM  E V P+ +TFV +L  CSHSGLV EG++ F  M +E+ I P ++
Sbjct: 426 HGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIE 485

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HYGCMVDLFGRA  L  A   I++MP+ P+  IWG+L+ ACR+HG +ELG +A+ R+ ++
Sbjct: 486 HYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKL 545

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           + ++ G  VLMSNIYA   +W+ V  +R +   + + K  G S I++N K   F  G++ 
Sbjct: 546 EPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKR 605

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           H +  +IY +L  + +K+K  GYVPD   VL DVEE+EK+ ++  HSE+LA+ FG+++  
Sbjct: 606 HKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKE 665

Query: 652 PKSP------IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            +        I+I KNLRVC DCH + K +S++ E EIIVRD  RFH +KDG+CSC DYW
Sbjct: 666 KEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 241/454 (53%), Gaps = 42/454 (9%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FYQ     G R D  +FPP+LKA      L +G ++H    K+    D FV   L+ MY 
Sbjct: 101 FYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYA 160

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  N AR +FD+M  RD  +WN MI  YC+ G   EA  + +EM+   V  D + + +
Sbjct: 161 ACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCN 220

Query: 135 ILPVCARSDNILSGLLIHLYIVKH------------------------GLEF-------N 163
           I+  C R+ N+     I+ +++++                         +EF       N
Sbjct: 221 IVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRN 280

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           LFVS  +++ Y+K G +  A  +FDQ   +D+V W ++I+AY +S+ P  A   F  M  
Sbjct: 281 LFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCC 340

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMYAKLGII 282
           +GI+PD++T++S+ S    L     ++ VH +    G  +E V+ I NA+++MYAK G +
Sbjct: 341 SGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNG--LESVLPIDNALINMYAKCGGL 398

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           ++A  VFE +P ++V+SW+++I  +A +G AS+++ +F  M++ N + PN+ T+V +L  
Sbjct: 399 DAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQEN-VEPNEVTFVGVLYG 457

Query: 343 YSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
            SH G + +G KI A +     +   +    C+VD++G+   + +A+ +   +P + +V 
Sbjct: 458 CSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVV 517

Query: 402 -WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
            W +++S   +HG+ +      +++L   + PDH
Sbjct: 518 IWGSLMSACRVHGELELGELAAKRILK--LEPDH 549


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/669 (35%), Positives = 375/669 (56%), Gaps = 7/669 (1%)

Query: 27  LRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           ++PD  T   ++  C +   +  G  IH   +  G    V +  +L++MY   G  + A 
Sbjct: 242 VKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAE 301

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVCARS 142
            LF +M  RD  SWN MIS Y QS + VEAL+ L ++ + +    + +T +S L  C+  
Sbjct: 302 SLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSP 361

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           + +++G  IH  I++  L+  L + N+L+ MY+K   M    RVF+ M   DVVS N + 
Sbjct: 362 EALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLT 421

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN-SRSVHGFIMRRGW 261
             Y    D   A   F+ M+  GI+P+ +T+++L      L D  +    +H ++ + G 
Sbjct: 422 GGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTG- 480

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + D  I N+++ MYA  G + S+  +F  +  K VISWN +I    ++G   EAI++F 
Sbjct: 481 LLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFM 540

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
             +       ++      L + +++ +L +G+++H   +KN L  D  V    +DMYGKC
Sbjct: 541 DSQHAGN-KLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKC 599

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G++D  +          +  WN +IS +  +G   +A + F+ M+  G +PD++TFV+LL
Sbjct: 600 GKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALL 659

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +ACSH+GL+ +G  Y++ M   FG+ P +KH  C+VDL GR G    A  FI  MPV P+
Sbjct: 660 SACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPN 719

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             IW +LL + R H N+++G  A+  L E+D  +   YVL+SN+YA   +W  VD++RS 
Sbjct: 720 DLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSH 779

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +   L K P  S +++ N+V  F  G+R+H   EKIY +L  +  K++ +GYV D S  
Sbjct: 780 MKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSA 839

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L D +E++KEH L +HSE+LA+A+G++  P  S I+IFKNLRVC DCH   K +S +  R
Sbjct: 840 LHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHR 899

Query: 682 EIIVRDSNR 690
           EI++RD  R
Sbjct: 900 EIVLRDPYR 908



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/549 (27%), Positives = 264/549 (48%), Gaps = 28/549 (5%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRP-----DFYTFPPVLKACRN------LVDGKKI 50
           +S   RCG  S A      FTL   +R        +    ++ AC +         G  I
Sbjct: 13  VSGCARCGLESTA------FTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAI 66

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           H    + G   +V++  +LLH+Y   GL   A++LF +MP R+  SW A++     +G  
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCM 126

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EAL     MR EGV  +   +A+++ +C   ++ ++GL +  ++V  GL  ++ V+N+L
Sbjct: 127 EEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSL 186

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF--FTTMQQAGIQP 228
           I M+     ++ A R+FD+M ERD +SWN++I+ Y  S++ + +  F   + M+   ++P
Sbjct: 187 ITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY--SHEEVYSKCFIVLSDMRHGEVKP 244

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D+ TL SL S+ A  +       +H   +  G      +I NA+V+MY+  G ++ A ++
Sbjct: 245 DVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLI-NALVNMYSTAGKLDEAESL 303

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F  +  +DVISWNT+I+ Y Q+    EA+E    + + +E  PN  T+ S L A S   A
Sbjct: 304 FRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEA 363

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L  G  IHA +++  L   + +   L+ MY KC  ++D   +F  +P    V  N +   
Sbjct: 364 LMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGG 423

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
           +        A+  F  M   G++P++IT ++L   C   G +       H    + G+  
Sbjct: 424 YAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLS 483

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
                  ++ ++   G L  +      +  +   S W A++ A   HG  E     + +L
Sbjct: 484 DEYITNSLITMYATCGDLESSTGIFSRINNKSVIS-WNAIIAANVRHGRGE----EAIKL 538

Query: 529 FEVDSENVG 537
           F +DS++ G
Sbjct: 539 F-MDSQHAG 546



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/496 (28%), Positives = 233/496 (46%), Gaps = 9/496 (1%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+     G+  +      V+  C  L D   G ++   V+  G    V VA SL+ M+  
Sbjct: 133 YRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGN 192

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
                 A +LFD M  RD  SWNAMIS Y       +   +L +MR   V  D  T+ S+
Sbjct: 193 LRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSL 252

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           + VCA SD +  G  IH   V  GL  ++ + N L+NMY+  G +  A  +F  M  RDV
Sbjct: 253 VSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDV 312

Query: 196 VSWNSIIAAYEQSNDPITA-HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +SWN++I++Y QSN  + A       +Q     P+ +T  S     +      N R++H 
Sbjct: 313 ISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHA 372

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            I++R      ++IGN+++ MY+K   +     VFE +P  DV+S N L  GYA     +
Sbjct: 373 MILQRS-LQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVA 431

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ-GIKIHARVIKNCLCFDVFVATC 373
            A+ VF  M     I PN  T +++      +G L   G+ +HA V +  L  D ++   
Sbjct: 432 NAMRVFSWMRGTG-IKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNS 490

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+ MY  CG ++ +  +F ++   S + WNAII+ +  HG+G++A+  F      G + D
Sbjct: 491 LITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLD 550

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
                  L++ ++   + EG +  H +  + G+          +D++G+ G +      +
Sbjct: 551 RFCLAECLSSSANLASLEEGMQ-LHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 494 QNMPVRPDASIWGALL 509
            +   RP    W  L+
Sbjct: 610 PDPAHRP-TQCWNTLI 624



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 207/441 (46%), Gaps = 24/441 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS YV+     EA++   Q   T    P+  TF   L AC +   L++G+ IH  +L+ 
Sbjct: 318 MISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQR 377

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  + +  SLL MY +        ++F+ MP  D  S N +  GY    +   A+ + 
Sbjct: 378 SLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVF 437

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             MR  G+  + IT+ ++   C    ++ S G+ +H Y+ + GL  + +++N+LI MYA 
Sbjct: 438 SWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYAT 497

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  +  +F ++  + V+SWN+IIAA  +      A   F   Q AG + D   L   
Sbjct: 498 CGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAEC 557

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L        +HG  ++ G   +  ++ NA +DMY K G ++           + 
Sbjct: 558 LSSSANLASLEEGMQLHGLSVKNGLDCDSHVV-NATMDMYGKCGKMDCMLKTLPDPAHRP 616

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
              WNTLI+GYA+ G   EA + F+ M    +  P+  T+V++L A SH G + +G+  +
Sbjct: 617 TQCWNTLISGYARYGYFKEAEDTFKHMVSVGQ-KPDYVTFVALLSACSHAGLIDKGMDYY 675

Query: 357 ARV---------IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
             +         IK+C+        C+VD+ G+ G+  +A     ++P   + + W +++
Sbjct: 676 NSMAPTFGVSPGIKHCV--------CIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLL 727

Query: 407 SCHGIHGQGDKALNFFRQMLD 427
           S    H   D      + +L+
Sbjct: 728 SSSRTHKNLDIGRKAAKNLLE 748



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 193/414 (46%), Gaps = 9/414 (2%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR---SDNI 145
           MP R S SW   +SG  + G    A  +L  MR   V +    +AS++  C      +  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH    + GL  N+++   L+++Y   G++ +A R+F +M +R+VVSW +I+ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +     A   +  M++ G+  +   L ++ S+   L D      V   ++  G  +  
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSG-LLTH 179

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V + N+++ M+  L  +  A  +F+ +  +D ISWN +I+ Y+   + S+   V   M  
Sbjct: 180 VSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRH 239

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
             E+ P+  T  S++   +    +  G  IH+  + + L   V +   LV+MY   G++D
Sbjct: 240 -GEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLD 298

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTA 443
           +A SLF  + R   + WN +IS +       +AL    Q+L  DEG  P+ +TF S L A
Sbjct: 299 EAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEG-PPNSMTFSSALGA 357

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           CS    +  G R  H M  +  ++  L     ++ ++ +   +       ++MP
Sbjct: 358 CSSPEALMNG-RTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMP 410


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 371/659 (56%), Gaps = 4/659 (0%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K++H S++      D F+   LL     F   + +  LF      +   +N +I+G+  +
Sbjct: 30  KQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNN 89

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               E LD+   +R  G+++   T   +L  C R+ N   G+ +H  +VK G   ++   
Sbjct: 90  HLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAM 149

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
            +L+++Y+  G +  A +VF+++ ER VV+W ++ + Y  +     A   F  M + G++
Sbjct: 150 TSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVR 209

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD   +V + S    + D  +   +    M      ++  +   +V++YAK G +  A +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKH-MEEMEMQKNSFVRTTLVNLYAKCGKMEKARS 268

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHV 346
           VF+ +  KD+++W+T+I GYA N    E IE F QM++E   + P+Q + V  L + + +
Sbjct: 269 VFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQE--NLKPDQFSIVGFLSSCASL 326

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           GAL  G    + + ++    ++F+A  L+DMY KCG +     +F ++     V  NA I
Sbjct: 327 GALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S    +G    +   F Q    G+ PD  TF+ LL  C H+GL+ +G R+F+ +   + +
Sbjct: 387 SGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYAL 446

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           K  ++HYGCMVDL+GRAG L  A+  I +MP+RP+A +WGALL  CR+  + +L      
Sbjct: 447 KRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLK 506

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
            L  ++  N G YV +SNIY+  G+W+   EVR +   +G+KK PG+S IE+   V  F 
Sbjct: 507 ELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFL 566

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
             +++HP  +KIY +L +L  +M+ +G+VP   FV  DVE++EKE +L  HSE+LA+AFG
Sbjct: 567 ADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFG 626

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +IS+     I++ KNLRVCGDCH   K IS+IT REI+VRD+NRFH F +G CSC DYW
Sbjct: 627 LISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 208/416 (50%), Gaps = 16/416 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+ +V      E +D F       GL    +TFP VLKAC    N   G  +H  V+K 
Sbjct: 82  LINGFVNNHLFHETLDLFLSIR-KHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKC 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  DV    SLL +Y   G  N A K+F+++P R   +W A+ SGY  +G   EA+D+ 
Sbjct: 141 GFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLF 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   GV  D   +  +L  C    ++ SG  I  ++ +  ++ N FV   L+N+YAK 
Sbjct: 201 KKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKC 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VFD M E+D+V+W+++I  Y  ++ P     FF  M Q  ++PD  ++V   
Sbjct: 261 GKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFL 320

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           S  A L            I R   F+ ++ + NA++DMYAK G +     VF+ +  KD+
Sbjct: 321 SSCASLGALDLGEWGISLIDRHE-FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDI 379

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +  N  I+G A+NG    +  VF   E+   I+P+  T++ +L    H G ++ G+    
Sbjct: 380 VIMNAAISGLAKNGHVKLSFAVFGQTEKLG-ISPDGSTFLGLLCGCVHAGLIQDGL---- 434

Query: 358 RVIKNCLCFDVFVAT-----CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           R      C      T     C+VD++G+ G +DDA  L   +P R +++ W A++S
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/695 (34%), Positives = 383/695 (55%), Gaps = 26/695 (3%)

Query: 25  SGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           +G+  D +++   L AC    +L  G+ +H   +  G    VFV+ SL+ MY + G    
Sbjct: 103 AGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGE 162

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA- 140
           AR++FD    RD  SWN+++SGY ++G   E + +   MR  G+ ++   + S++  C+ 
Sbjct: 163 ARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSG 222

Query: 141 RSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           R D  +     +H  ++K GL+ ++F+ + +I+MYAK G +  A  +F  + E +VV +N
Sbjct: 223 RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFN 282

Query: 200 SIIAAYEQSNDPI------TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           ++IA + ++   I       A   ++ +Q  G+QP   T  S+             + +H
Sbjct: 283 TMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIH 342

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G +++   F ED  IG+A++D+Y   G +      F   P  D+++W  +++G  QN L 
Sbjct: 343 GQVIKY-TFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELH 401

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF--VA 371
            +A+ +F        + P+  T  S++ A + +   R G +I     K+   FD F  + 
Sbjct: 402 EKALSLFHESLGAG-LKPDLFTISSVMNACASLAVARAGEQIQCFATKSG--FDRFTVMG 458

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
              V MY + G +D A   F ++     V W+A+ISCH  HG    AL+FF +M+D  V 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ ITF+ +LTACSH GLV EG RY+  M +++G+ P +KH  C+VDL GRAG L  A  
Sbjct: 519 PNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEA 578

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI N     D  IW +LL +CRIH ++E G + ++R+ E++  +   YV++ N+Y + G+
Sbjct: 579 FISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGE 638

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
                + R L + RG+KK PG S IE+   V  F  G+++HP+   IY +L  + ++++ 
Sbjct: 639 LSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEK 698

Query: 612 LGYVPDKSFVLQDVEEDEKEH-ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
           L           D E  ++E  ++  HSE+LA+A G+I  P  +PI++ KNLRVC DCH+
Sbjct: 699 LATT--------DTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHS 750

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             K IS+   REII+RD  RFHHF+DG CSC DYW
Sbjct: 751 TMKLISKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 20/492 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           +L+AC +L     +H  + +      +F+  +LL  YCR G    AR+L D+MP R++ S
Sbjct: 17  LLRACTSLRHAAAVHAHIARAHPAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVS 76

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +N +I  Y + G A  +L+ L   R  GV +D  + A+ L  C+R+ ++ +G  +H   +
Sbjct: 77  FNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAI 136

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
             GL   +FVSN+L++MY+K G M  A RVFD   ERD VSWNS+++ Y ++        
Sbjct: 137 LDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVR 196

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN--SRSVHGFIMRRGWFMEDVIIGNAVVD 274
            F  M++ G+  +   L S+    +   D     + +VHG +++ G    DV + +A++D
Sbjct: 197 VFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAG-LDSDVFLVSAMID 255

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN------GLASEAIEVFQMMEECNE 328
           MYAK G +  A A+F  +   +V+ +NT+I G+ +        +ASEA+ ++  ++    
Sbjct: 256 MYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQS-RG 314

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P + T+ S+L A +  G L  G +IH +VIK     D F+ + L+D+Y   G ++D  
Sbjct: 315 MQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGF 374

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
             F   P+   V W A++S    +   +KAL+ F + L  G++PD  T  S++ AC+   
Sbjct: 375 RCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLA 434

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +   G++      + F  K     +  M    V ++ R+G +  A    Q M    D   
Sbjct: 435 VARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH-DVVS 488

Query: 505 WGALLGACRIHG 516
           W A++     HG
Sbjct: 489 WSAVISCHAQHG 500



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 12  SEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKLGFEWDVFVAA 67
           SEA+   Y    + G++P  +TF  VL+AC NL      GK+IH  V+K  F+ D F+ +
Sbjct: 301 SEALT-LYSEVQSRGMQPTEFTFSSVLRAC-NLAGYLEFGKQIHGQVIKYTFQEDDFIGS 358

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +L+ +Y   G      + F   P  D  +W AM+SG  Q+    +AL +  E    G+  
Sbjct: 359 ALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKP 418

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T++S++  CA      +G  I  +  K G +    + N+ ++MYA+ G +  A R F
Sbjct: 419 DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
            +M   DVVSW+++I+ + Q      A  FF  M  A + P+ +T + + +  +      
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVD 538

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA-VFEGLPVKDVISWNTLIT 305
                +  + +       +     VVD+  + G +  A A +  G+   D + W +L+ 
Sbjct: 539 EGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLA 597



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 5/199 (2%)

Query: 11  LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAA 67
           L E     +  +L +GL+PD +T   V+ AC +L     G++I C   K GF+    +  
Sbjct: 400 LHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGN 459

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           S +HMY R G  + A + F +M   D  SW+A+IS + Q G A +AL   DEM    V  
Sbjct: 460 SCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVP 519

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAKFGMMRHALR- 185
           + IT   +L  C+    +  GL  +  + K +GL   +     ++++  + G +  A   
Sbjct: 520 NEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAF 579

Query: 186 VFDQMMERDVVSWNSIIAA 204
           + + +   D V W S++A+
Sbjct: 580 ISNGIFHADPVIWRSLLAS 598


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/529 (39%), Positives = 339/529 (64%), Gaps = 5/529 (0%)

Query: 180 MRHALRVFDQMMER-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLT 237
           M +A +VF ++ +  +V  WN++I  Y +  + ++A   +  M+ +G ++PD  T   L 
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             V ++ D R   ++H  ++R G F   + + N+++ +YA  G + SA  VF+ +P KD+
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSG-FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++WN++I G+A+NG   EA+ ++  M+    I P+  T VS+L A + +GAL  G + H 
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMD-LKGIKPDGFTIVSLLSACAKIGALTLGKRFHV 246

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK  L  ++  +  L+D+Y +CGR+++A +LF ++   +SV W ++I    ++G G +
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKE 306

Query: 418 ALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           A+  F+ M   EG+ P  ITFV +L ACSH G+V EG  YF  M EE+ I+P ++H+GCM
Sbjct: 307 AIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCM 366

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL  RAG +  A+ +I  MP++P+  IW  LLGAC +HG+ +L  +A  ++ +++  + 
Sbjct: 367 VDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHS 426

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YVL+SN+YA+  +W  V ++R      G++K PG S +EV N+V  F  G+++HP+ +
Sbjct: 427 GDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQND 486

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
            IY +L+ +T +++  GYVP  S V  DVEE+EKE+ L  HSE++AIAF +IS+P + PI
Sbjct: 487 MIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPI 546

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           ++ KNL+VC DCH   K +S++  REI+VRD +RFHHFK+G CSC DYW
Sbjct: 547 RVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 178/325 (54%), Gaps = 4/325 (1%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYI 155
           WN +I GY + GN+V A+ +  EMR  G V  D  T   +L    +  ++  G  IH  +
Sbjct: 88  WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           ++ G    ++V N+L+++YA  G +  A +VFD+M E+D+V+WNS+I  + ++  P  A 
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             +T M   GI+PD  T+VSL S  A++      +  H ++++ G    ++   N ++D+
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVG-LTRNLHSSNVLLDL 266

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           YA+ G +  A  +F+ +  K+ +SW +LI G A NGL  EAIE+F+ ME    + P + T
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEIT 326

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           +V IL A SH G +++G +   R+ +   +   +    C+VD+  + G++  A     ++
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKM 386

Query: 395 P-RSSSVPWNAIISCHGIHGQGDKA 418
           P + + V W  ++    +HG  D A
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLA 411



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 15/353 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y   G    AV  + +   +  + PD +T+P +LKA   + D   G+ IH  V++ 
Sbjct: 91  LIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRS 150

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF   ++V  SLLH+Y   G    A K+FD MP +D  +WN++I+G+ ++G   EAL + 
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM L+G+  D  T+ S+L  CA+   +  G   H+Y++K GL  NL  SN L+++YA+ 
Sbjct: 211 TEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARC 270

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G +  A  +FD+M++++ VSW S+I     +     A   F  M+ + G+ P  +T V  
Sbjct: 271 GRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV-- 328

Query: 237 TSIVAQLNDCRNSRSVHGFI--MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLP 293
             I+   + C   +    +   M   + +E  I     +VD+ A+ G +  A      +P
Sbjct: 329 -GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMP 387

Query: 294 VK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYS 344
           ++ +V+ W TL+     +G  S+  E+ +M  +  ++ PN  G YV +   Y+
Sbjct: 388 MQPNVVIWRTLLGACTVHG-DSDLAELARM--KILQLEPNHSGDYVLLSNMYA 437



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 142/272 (52%), Gaps = 8/272 (2%)

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI---INSACAVFEGL--PVKDVISWNTLI 304
           R +H F +R G  + D  +G  ++     L     ++ A  VF  +  P+ +V  WNTLI
Sbjct: 34  RQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI-NVFIWNTLI 92

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            GYA+ G +  A+ +++ M     + P+  TY  +L A   +  +R G  IH+ VI++  
Sbjct: 93  RGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGF 152

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
              ++V   L+ +Y  CG +  A  +F ++P    V WN++I+    +G+ ++AL  + +
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTE 212

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M  +G++PD  T VSLL+AC+  G ++ G+R FH+   + G+  +L     ++DL+ R G
Sbjct: 213 MDLKGIKPDGFTIVSLLSACAKIGALTLGKR-FHVYMIKVGLTRNLHSSNVLLDLYARCG 271

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +  A      M V  ++  W +L+    ++G
Sbjct: 272 RVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 302


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 340/559 (60%), Gaps = 35/559 (6%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT-TMQQAG-IQPDLLTLVSLT 237
           + ++ +V D      + ++NS+I A+ +S+ P  +  F++  +  AG + PD  T   L 
Sbjct: 59  LHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLV 118

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN-------------- 283
              AQL       SVHG  ++ G F  D  + + ++ MYA+LG ++              
Sbjct: 119 RTSAQLLAHGTGSSVHGAAVKYG-FEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDL 177

Query: 284 -------SACA----------VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                  SACA          +F+ +  KD I+WN +I+GY Q G + EA+ +F +M+  
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQR- 236

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  N+ + VS+L A SH+GAL QG   HA + +N L   + + T L+DMY KCG ++ 
Sbjct: 237 EGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNK 296

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           AM +F+ +   +   W++ I    ++G G+K L  F  M  + V+P+ ITFVS+L  CS 
Sbjct: 297 AMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSV 356

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            GLV EG+++F  M + +GI+P L+HYGCMVDL+GRAGHL  A NFI +MPVRP    WG
Sbjct: 357 VGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWG 416

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALL AC+I+ NME+G +AS ++ E++++N G YVL+SNIYA+   W+ V  VR     +G
Sbjct: 417 ALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKG 476

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           ++K PG S IEV  +V  F+ G+++HP+Y +I   L  ++ ++K  GYV + + V  D+E
Sbjct: 477 VRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIE 536

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  L  HSE++AIAFG+IS  P  PI+I KNLRVC DCH+ TK IS+   REI+VR
Sbjct: 537 EEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVR 596

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHF+DG CSC  YW
Sbjct: 597 DRNRFHHFRDGECSCKGYW 615



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 156/330 (47%), Gaps = 45/330 (13%)

Query: 18  FYQFTLTSG--LRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHM 72
           FY   L S   L PD YTF  +++    L+    G  +H + +K GFE+D  V + L++M
Sbjct: 96  FYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYM 155

Query: 73  YC-------------------------------RFGLANVARKLFDDMPVRDSGSWNAMI 101
           Y                                + G    ARKLFD M  +D  +WNAMI
Sbjct: 156 YAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMI 215

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SGY Q G + EAL + + M+ EGV ++ +++ S+L  C+    +  G   H YI ++ L 
Sbjct: 216 SGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLR 275

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             L +   LI+MYAK G M  A+ VF  M E++V +W+S I     +         F+ M
Sbjct: 276 MTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLM 335

Query: 222 QQAGIQPDLLTLVSL---TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYA 277
           +Q  +QP+ +T VS+    S+V  + + R     H   M + + +E  +     +VD+Y 
Sbjct: 336 KQDSVQPNEITFVSVLRGCSVVGLVEEGRK----HFESMSKVYGIEPRLEHYGCMVDLYG 391

Query: 278 KLGIINSACAVFEGLPVK-DVISWNTLITG 306
           + G ++ A      +PV+  V +W  L+  
Sbjct: 392 RAGHLDEALNFINSMPVRPHVGAWGALLNA 421



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MIS YV+CG+  EA+  F       G++ +  +   VL AC +L     G+  H  + + 
Sbjct: 214 MISGYVQCGQSREALSLF-NLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERN 272

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                + +  +L+ MY + G  N A ++F  M  ++  +W++ I G   +G   + L++ 
Sbjct: 273 KLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELF 332

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
             M+ + V  + IT  S+L  C+    +  G      + K +G+E  L     ++++Y +
Sbjct: 333 SLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGR 392

Query: 177 FGMMRHALRVFDQMMER-DVVSWNSIIAA 204
            G +  AL   + M  R  V +W +++ A
Sbjct: 393 AGHLDEALNFINSMPVRPHVGAWGALLNA 421


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/507 (42%), Positives = 311/507 (61%), Gaps = 2/507 (0%)

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           NS+I  Y   N  + +   F  M +  I PD  T  ++    AQL D    + +HG +++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G F+ DV    A+V +Y     I+ A  +F+ +P ++ ++WN LITGY  N    +AI+
Sbjct: 118 MG-FICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            F+ M   +   P++ T V +L A SH+GA  QG  IH  +  N L  +VFV T L+DMY
Sbjct: 177 AFRGML-ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG + +   +F ++   +   WN +IS + ++GQGD AL  F +ML E  +PD +TF+
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L AC H GLV+EG+  F  M+++FG++P ++HYGCMVDL GRAG L  A   IQ+M +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            PD  IW ALL ACR+HGN +LG     RL E++  N   YVL+SNIY+   +W  V ++
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R +   RG++K PG SSIE+NN V  F   N   P++E IY +L NL  K+K  GYV   
Sbjct: 416 RGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
              L D+E++EKEH +  HSE+LA+AFG+++SP    ++I KNLR+C DCH + K +S +
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            +R I+VRD NRFHHF +G CSC DYW
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 173/363 (47%), Gaps = 19/363 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS--GLRPDFYTFPPVLKACRNLVD---GKKIHCSVL 55
           MI  Y+    L++ ++  Y F L     + PD  TFP VLKA   L D   GK IH  V+
Sbjct: 60  MIRTYLD---LNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           ++GF  DV+ + +L+H+YC     + A +LFD+MP R++ +WNA+I+GY  +   V+A+D
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
               M  +G      TV  +L  C+       G  IH +I  + L  N+FV   LI+MYA
Sbjct: 177 AFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +    +VF+++ E++V +WN +I+ Y  +     A   F+ M     +PD +T + 
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +             R     + ++      +     +VD+  + G++  A  + + + ++
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE 356

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYS------HVG 347
            D I W  L+     +G       + + +    E+ PN G  YV +   YS       VG
Sbjct: 357 PDPIIWRALLCACRVHGNTKLGEYIIKRL---IELEPNNGENYVLLSNIYSRERRWAEVG 413

Query: 348 ALR 350
            LR
Sbjct: 414 KLR 416



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 6/342 (1%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G  ++AR         +S   N+MI  Y      + +L I   M    +  D  T  +
Sbjct: 35  RNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPA 94

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   A+  +   G +IH  +++ G   +++ S  L+++Y     +  A ++FD+M ER+
Sbjct: 95  VLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERN 154

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            V+WN++I  Y  +   + A   F  M   G QP   T+V + S  + L      + +H 
Sbjct: 155 AVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHE 214

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           FI      + +V +G A++DMYAK G +     VFE +  K+V +WN LI+GYA NG   
Sbjct: 215 FIYHNRLRL-NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGD 273

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--T 372
            A++ F  M   N   P++ T++ +L A  H G + +G +     +K        +    
Sbjct: 274 AALQAFSRMLMEN-FKPDEVTFLGVLCACCHQGLVTEG-RWQFMSMKQQFGLQPRIEHYG 331

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           C+VD+ G+ G +++A+ L   +      + W A++    +HG
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHG 373


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/507 (42%), Positives = 311/507 (61%), Gaps = 2/507 (0%)

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
           NS+I  Y   N  + +   F  M +  I PD  T  ++    AQL D    + +HG +++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
            G F+ DV    A+V +Y     I+ A  +F+ +P ++ ++WN LITGY  N    +AI+
Sbjct: 118 MG-FICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            F+ M   +   P++ T V +L A SH+GA  QG  IH  +  N L  +VFV T L+DMY
Sbjct: 177 AFRGML-ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG + +   +F ++   +   WN +IS + ++GQGD AL  F +ML E  +PD +TF+
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
            +L AC H GLV+EG+  F  M+++FG++P ++HYGCMVDL GRAG L  A   IQ+M +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
            PD  IW ALL ACR+HGN +LG     RL E++  N   YVL+SNIY+   +W  V ++
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R +   RG++K PG SSIE+NN V  F   N   P++E IY +L NL  K+K  GYV   
Sbjct: 416 RGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
              L D+E++EKEH +  HSE+LA+AFG+++SP    ++I KNLR+C DCH + K +S +
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            +R I+VRD NRFHHF +G CSC DYW
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 173/363 (47%), Gaps = 19/363 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS--GLRPDFYTFPPVLKACRNLVD---GKKIHCSVL 55
           MI  Y+    L++ ++  Y F L     + PD  TFP VLKA   L D   GK IH  V+
Sbjct: 60  MIRTYLD---LNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           ++GF  DV+ + +L+H+YC     + A +LFD+MP R++ +WNA+I+GY  +   V+A+D
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
               M  +G      TV  +L  C+       G  IH +I  + L  N+FV   LI+MYA
Sbjct: 177 AFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +    +VF+++ E++V +WN +I+ Y  +     A   F+ M     +PD +T + 
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           +             R     + ++      +     +VD+  + G++  A  + + + ++
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE 356

Query: 296 -DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYS------HVG 347
            D I W  L+     +G       + + +    E+ PN G  YV +   YS       VG
Sbjct: 357 PDPIIWRALLCACRVHGNTKLGEYIIKRL---IELEPNNGENYVLLSNIYSRERRWAEVG 413

Query: 348 ALR 350
            LR
Sbjct: 414 KLR 416



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 6/342 (1%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G  ++AR         +S   N+MI  Y      + +L I   M    +  D  T  +
Sbjct: 35  RNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPA 94

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   A+  +   G +IH  +++ G   +++ S  L+++Y     +  A ++FD+M ER+
Sbjct: 95  VLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERN 154

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            V+WN++I  Y  +   + A   F  M   G QP   T+V + S  + L      + +H 
Sbjct: 155 AVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHE 214

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           FI      + +V +G A++DMYAK G +     VFE +  K+V +WN LI+GYA NG   
Sbjct: 215 FIYHNRLRL-NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGD 273

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--T 372
            A++ F  M   N   P++ T++ +L A  H G + +G +     +K        +    
Sbjct: 274 AALQAFSRMLMEN-FKPDEVTFLGVLCACCHQGLVTEG-RWQFMSMKQQFGLQPRIEHYG 331

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           C+VD+ G+ G +++A+ L   +      + W A++    +HG
Sbjct: 332 CMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHG 373


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 347/574 (60%), Gaps = 3/574 (0%)

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +  +L   AR+ + + GL +H Y+VK GL     V+NNLIN Y+K  +   + R F+   
Sbjct: 18  ICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++   +W+SII+ + Q+  P  +  F   M    ++PD   L S T   A L+ C   RS
Sbjct: 78  QKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRS 137

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH   M+ G +  DV +G+++VDMYAK G I  A  +F+ +P ++V++W+ ++ GYAQ G
Sbjct: 138 VHCLSMKTG-YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMG 196

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              EA+ +F+     N +  N  ++ S++   ++   L  G +IH   IK+      FV 
Sbjct: 197 ENEEALWLFKEALFEN-LAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVG 255

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + LV +Y KCG  + A  +F +VP  +   WNA++  +  H    K +  F++M   G++
Sbjct: 256 SSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMK 315

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ ITF+++L ACSH+GLV EG+ YF  M+E   I+P  KHY  +VD+ GRAG L  A  
Sbjct: 316 PNFITFLNVLNACSHAGLVDEGRYYFDQMKES-RIEPTDKHYASLVDMLGRAGRLQEALE 374

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I NMP+ P  S+WGALL +C +H N EL A A+D++FE+   + G ++ +SN YA  G+
Sbjct: 375 VITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGR 434

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           +E   + R L RDRG KK  G S +E  NKV  F  G R H K ++IY++L  L  +M+ 
Sbjct: 435 FEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEK 494

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY+ D S+VL++V+ DEK   +  HSERLAIAFG+I+ P   PI++ KNLRVCGDCHN 
Sbjct: 495 AGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNA 554

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KF+S  T R IIVRD+NRFH F+DG CSC DYW
Sbjct: 555 IKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 179/356 (50%), Gaps = 37/356 (10%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           F +  +   LRPD +  P   K+C  L     G+ +HC  +K G++ DVFV +SL+ MY 
Sbjct: 103 FLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYA 162

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + G    ARK+FD+MP R+  +W+ M+ GY Q G   EAL +  E   E ++++  + +S
Sbjct: 163 KCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSS 222

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++ VCA S  +  G  IH   +K   + + FV ++L+++Y+K G+   A +VF+++  ++
Sbjct: 223 VISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKN 282

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +  WN+++ AY Q +        F  M+ +G++P+ +T +++      LN C      H 
Sbjct: 283 LGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNV------LNACS-----HA 331

Query: 255 FIMRRGWFMEDVIIGN----------AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTL 303
            ++  G +  D +  +          ++VDM  + G +  A  V   +P+    S W  L
Sbjct: 332 GLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGAL 391

Query: 304 ITG---YAQNGLAS-EAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIK 354
           +T    +    LA+  A +VF       E+ P + G ++S+  AY+  G      K
Sbjct: 392 LTSCTVHKNTELAAFAADKVF-------ELGPVSSGMHISLSNAYAADGRFEDAAK 440



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+ + G ++H  V+K G      VA +L++ Y +  L   +R+ F+D P + S +W+++I
Sbjct: 29  RSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSII 88

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           S + Q+     +L+ L +M    +  D   + S    CA       G  +H   +K G +
Sbjct: 89  SCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYD 148

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            ++FV ++L++MYAK G + +A ++FD+M +R+VV+W+ ++  Y Q  +   A   F   
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
               +  +  +  S+ S+ A        R +HG +  +  F     +G+++V +Y+K G+
Sbjct: 209 LFENLAVNDYSFSSVISVCANSTLLELGRQIHG-LSIKSSFDSSSFVGSSLVSLYSKCGV 267

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
              A  VF  +PVK++  WN ++  YAQ+    + IE+F+ M + + + PN  T++++L 
Sbjct: 268 PEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRM-KLSGMKPNFITFLNVLN 326

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
           A SH G + +G     ++ ++ +         LVDM G+ GR+ +A+ +   +P   +  
Sbjct: 327 ACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTES 386

Query: 401 PWNAIISCHGIHGQGDKA 418
            W A+++   +H   + A
Sbjct: 387 VWGALLTSCTVHKNTELA 404


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/538 (41%), Positives = 320/538 (59%), Gaps = 8/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++ +   G    A R+F  M  RDVVSWN++++   +S     A   F  M      
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----- 187

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
             +   VS  ++V+    C    S      R      D ++  A+V  Y  +G +  A  
Sbjct: 188 --VRNSVSWNAMVSGFA-CSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 244

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            FE +PV++++SWN ++ GY +N  A +A+ +F+ M     + PN  T  S+L   S++ 
Sbjct: 245 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 304

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G +IH   +K  L  ++ V T LV MY KCG +  A  LF ++     V WNA+IS
Sbjct: 305 ALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 364

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G +A+N F +M DEGV P+ ITFV++LTAC H+GL   G R F  MQE +GI+
Sbjct: 365 GYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE 424

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY CMVDL  RAG L  A + I++MP  P  S +G LL ACR++ N+E   +A+ +
Sbjct: 425 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 484

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E D ++ G YV ++NIYA   +W+ V  VR   +D  + KTPG+S IE+   +  F +
Sbjct: 485 LIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRS 544

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            +R HP+   I+++L  L  +MK++GYVPD  FVL DV+E  K  +L  HSE+LAI+FG+
Sbjct: 545 NDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGL 604

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P   ++IFKNLRVCGDCHN  K IS+I +REII+RD+ RFHHF+ G CSCGDYW
Sbjct: 605 ISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 176/340 (51%), Gaps = 31/340 (9%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +LL  +   G A+ AR+LF  MPVRD  SWN M+SG  +SG   EA  +   M +     
Sbjct: 134 TLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR---- 189

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           + ++  +++   A S ++ +         + G   +  +   +++ Y   G +  A+  F
Sbjct: 190 NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYF 246

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDC 246
           + M  R++VSWN+++A Y +++    A   F TM ++A +QP+  TL S+    + L+  
Sbjct: 247 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 306

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              + +H + M+      ++ +G ++V MY K G ++SAC +F  +  +DV++WN +I+G
Sbjct: 307 GFGKQIHQWCMKLP-LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 365

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YAQ+G   EAI +F+ M++   + PN  T+V++L A  H G    GI+          CF
Sbjct: 366 YAQHGDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGLCDFGIR----------CF 414

Query: 367 D-----------VFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           +           V   +C+VD+  + G+++ A+ L   +P
Sbjct: 415 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 1/186 (0%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM- 120
           D  +  +++  Y   G    A + F+ MPVR+  SWNA+++GY ++ +A +AL +   M 
Sbjct: 222 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 281

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R   V  +  T++S+L  C+    +  G  IH + +K  L  NL V  +L++MY K G +
Sbjct: 282 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 341

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A ++F +M  RDVV+WN++I+ Y Q  D   A   F  M+  G++P+ +T V++ +  
Sbjct: 342 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 401

Query: 241 AQLNDC 246
                C
Sbjct: 402 IHTGLC 407



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 3/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+     +A+  F      + ++P+  T   VL  C NL     GK+IH   +KL
Sbjct: 260 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 319

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               ++ V  SL+ MYC+ G  + A KLF +M  RD  +WNAMISGY Q G+  EA+++ 
Sbjct: 320 PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLF 379

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           + M+ EGV  + IT  ++L  C
Sbjct: 380 ERMKDEGVEPNWITFVAVLTAC 401



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 11/254 (4%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D +  N ++  +   G  + A  +F  +PV+DV+SWNT+++G +++G   EA  VF  M 
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             N ++ N    VS       + A  +  +            D  + T +V  Y   G +
Sbjct: 188 VRNSVSWN--AMVSGFACSRDMSAAEEWFRNAPEK------GDAVLWTAMVSGYMDIGNV 239

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTA 443
             A+  F  +P  + V WNA+++ +  +   D AL  FR M+ E  V+P+  T  S+L  
Sbjct: 240 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 299

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS+   +  G++  H    +  +  +L     +V ++ + G L  A      M  R D  
Sbjct: 300 CSNLSALGFGKQ-IHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVV 357

Query: 504 IWGALLGACRIHGN 517
            W A++     HG+
Sbjct: 358 AWNAMISGYAQHGD 371



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)

Query: 373 CLVDMYGKC-GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           CL+  Y +  GR+ DA  LF ++P   +V +N ++SCH   G  D A   F  M    VR
Sbjct: 102 CLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASM---PVR 158

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            D +++ ++++  S SG V E +  F  M     +      +  MV  F  +  +  A  
Sbjct: 159 -DVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVS-----WNAMVSGFACSRDMSAAEE 212

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           + +N P + DA +W A+     + G M++G V
Sbjct: 213 WFRNAPEKGDAVLWTAM-----VSGYMDIGNV 239


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/609 (38%), Positives = 352/609 (57%), Gaps = 45/609 (7%)

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L +CAR+  + +   +H +IVK G+     ++N L+N+Y K G   HAL+VFD+M  RD 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 196 VSWNSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH- 253
           ++W S++ A  Q+N    T   F +    +G++PD     +L    A L    + R VH 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
            FI+    +  D ++ +++VDMYAK G++NSA AVF+ + VK+ ISW  +++GYA++G  
Sbjct: 130 HFIVSE--YANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRK 187

Query: 314 SEAIEVFQMM---------------------------------EECNEINPNQGTYVSIL 340
            EA+E+F+++                                 E  + ++P      SI+
Sbjct: 188 EEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPL--VLSSIV 245

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
            A +++ A   G ++H  VI   L FD  VF++  L+DMY KC  +  A  +F ++    
Sbjct: 246 GACANLAASIAGRQVHGLVI--ALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 303

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V W ++I     HGQ +KAL  +  M+  GV+P+ +TFV L+ ACSH G V +G+  F 
Sbjct: 304 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ 363

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M +++GI+P L+HY C++DL GR+G L  A N I  MP  PD   W ALL AC+  G  
Sbjct: 364 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRG 423

Query: 519 ELGAVASDRLF-EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           ++G   +D L      ++   Y+L+SNIYA+   W  V E R    +  ++K PG SS+E
Sbjct: 424 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 483

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK-SLGYVPDKSFVLQDVEEDEKEHILTS 636
           V  + ++FY G  +HP  E I+  L+ L  +M+   GYVPD S++L D++E EKE +L  
Sbjct: 484 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 543

Query: 637 HSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKD 696
           HSER A+A+G++ + P +PI+I KNLRVCGDCH   K IS+ITEREIIVRD+ R+HHFK 
Sbjct: 544 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 603

Query: 697 GICSCGDYW 705
           G CSC D+W
Sbjct: 604 GKCSCNDFW 612



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 226/460 (49%), Gaps = 44/460 (9%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R L   K +H  ++KLG      +A +L+++Y + G A+ A ++FD+MP RD  +W +++
Sbjct: 17  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 76

Query: 102 SGYCQSGNAVEAL-DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           +   Q+  + + L          G+  D    ++++  CA   +I  G  +H + +    
Sbjct: 77  TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 136

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE-------------- 206
             +  V ++L++MYAK G++  A  VFD +  ++ +SW ++++ Y               
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196

Query: 207 -----------------QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV---AQLNDC 246
                            QS   + A   FT M++  +  D+L  + L+SIV   A L   
Sbjct: 197 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERV--DILDPLVLSSIVGACANLAAS 254

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              R VHG ++  G F   V I NA++DMYAK   + +A  +F  +  +DV+SW +LI G
Sbjct: 255 IAGRQVHGLVIALG-FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVG 313

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLC 365
            AQ+G A +A+ ++  M   + + PN+ T+V ++ A SHVG + +G ++   + K+  + 
Sbjct: 314 MAQHGQAEKALALYDDMVS-HGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIR 372

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQ 424
             +   TCL+D+ G+ G +D+A +L + +P     P W A++S     G+G   +     
Sbjct: 373 PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADH 432

Query: 425 MLDEGVRPDHITFV---SLLTACSHSGLVSEGQRYFHMMQ 461
           ++      D  T++   ++  + S  G VSE +R    M+
Sbjct: 433 LVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEME 472



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 36/329 (10%)

Query: 27  LRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           LRPD + F  ++KAC NL  +D G+++HC  +   +  D  V +SL+ MY + GL N A+
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160

Query: 84  KLFDDMPVRDSGSWNAMISGYC-------------------------------QSGNAVE 112
            +FD + V+++ SW AM+SGY                                QSG  +E
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 220

Query: 113 ALDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171
           A  +  EMR E V  +DP+ ++SI+  CA     ++G  +H  ++  G +  +F+SN LI
Sbjct: 221 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280

Query: 172 NMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 231
           +MYAK   +  A  +F +M  RDVVSW S+I    Q      A   +  M   G++P+ +
Sbjct: 281 DMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEV 340

Query: 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           T V L    + +      R +   + +       +     ++D+  + G+++ A  +   
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400

Query: 292 LPV-KDVISWNTLITGYAQNGLASEAIEV 319
           +P   D  +W  L++   + G     I +
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRI 429



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           +IS +V+ G+  EA   F +         D      ++ AC NL   + G+++H  V+ L
Sbjct: 208 LISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIAL 267

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+  VF++ +L+ MY +      A+ +F  M  RD  SW ++I G  Q G A +AL + 
Sbjct: 268 GFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALY 327

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           D+M   GV  + +T   ++  C+    +  G  +   + K +G+  +L     L+++  +
Sbjct: 328 DDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGR 387

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  A  +   M    D  +W ++++A
Sbjct: 388 SGLLDEAENLIHTMPFPPDEPTWAALLSA 416


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/538 (41%), Positives = 320/538 (59%), Gaps = 8/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++ +   G    A R+F  M  RDVVSWN++++   +S     A   F  M      
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----- 138

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
             +   VS  ++V+    C    S      R      D ++  A+V  Y  +G +  A  
Sbjct: 139 --VRNSVSWNAMVSGFA-CSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 195

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            FE +PV++++SWN ++ GY +N  A +A+ +F+ M     + PN  T  S+L   S++ 
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 255

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G +IH   +K  L  ++ V T LV MY KCG +  A  LF ++     V WNA+IS
Sbjct: 256 ALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 315

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G +A+N F +M DEGV P+ ITFV++LTAC H+GL   G R F  MQE +GI+
Sbjct: 316 GYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE 375

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY CMVDL  RAG L  A + I++MP  P  S +G LL ACR++ N+E   +A+ +
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 435

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E D ++ G YV ++NIYA   +W+ V  VR   +D  + KTPG+S IE+   +  F +
Sbjct: 436 LIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRS 495

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            +R HP+   I+++L  L  +MK++GYVPD  FVL DV+E  K  +L  HSE+LAI+FG+
Sbjct: 496 NDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGL 555

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P   ++IFKNLRVCGDCHN  K IS+I +REII+RD+ RFHHF+ G CSCGDYW
Sbjct: 556 ISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 176/340 (51%), Gaps = 31/340 (9%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           +LL  +   G A+ AR+LF  MPVRD  SWN M+SG  +SG   EA  +   M +     
Sbjct: 85  TLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR---- 140

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           + ++  +++   A S ++ +         + G   +  +   +++ Y   G +  A+  F
Sbjct: 141 NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYF 197

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDC 246
           + M  R++VSWN+++A Y +++    A   F TM ++A +QP+  TL S+    + L+  
Sbjct: 198 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 257

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              + +H + M+      ++ +G ++V MY K G ++SAC +F  +  +DV++WN +I+G
Sbjct: 258 GFGKQIHQWCMKLP-LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 316

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YAQ+G   EAI +F+ M++   + PN  T+V++L A  H G    GI+          CF
Sbjct: 317 YAQHGDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGLCDFGIR----------CF 365

Query: 367 D-----------VFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           +           V   +C+VD+  + G+++ A+ L   +P
Sbjct: 366 EGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 1/186 (0%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM- 120
           D  +  +++  Y   G    A + F+ MPVR+  SWNA+++GY ++ +A +AL +   M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R   V  +  T++S+L  C+    +  G  IH + +K  L  NL V  +L++MY K G +
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 292

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A ++F +M  RDVV+WN++I+ Y Q  D   A   F  M+  G++P+ +T V++ +  
Sbjct: 293 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352

Query: 241 AQLNDC 246
                C
Sbjct: 353 IHTGLC 358



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 3/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+     +A+  F      + ++P+  T   VL  C NL     GK+IH   +KL
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 270

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               ++ V  SL+ MYC+ G  + A KLF +M  RD  +WNAMISGY Q G+  EA+++ 
Sbjct: 271 PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLF 330

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           + M+ EGV  + IT  ++L  C
Sbjct: 331 ERMKDEGVEPNWITFVAVLTAC 352



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 11/254 (4%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D +  N ++  +   G  + A  +F  +PV+DV+SWNT+++G +++G   EA  VF  M 
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             N ++ N    VS       + A  +  +            D  + T +V  Y   G +
Sbjct: 139 VRNSVSWN--AMVSGFACSRDMSAAEEWFRNAPEK------GDAVLWTAMVSGYMDIGNV 190

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTA 443
             A+  F  +P  + V WNA+++ +  +   D AL  FR M+ E  V+P+  T  S+L  
Sbjct: 191 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 250

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS+   +  G++  H    +  +  +L     +V ++ + G L  A      M  R D  
Sbjct: 251 CSNLSALGFGKQ-IHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVV 308

Query: 504 IWGALLGACRIHGN 517
            W A++     HG+
Sbjct: 309 AWNAMISGYAQHGD 322



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)

Query: 373 CLVDMYGKC-GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           CL+  Y +  GR+ DA  LF ++P   +V +N ++SCH   G  D A   F  M    VR
Sbjct: 53  CLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASM---PVR 109

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            D +++ ++++  S SG V E +  F  M     +      +  MV  F  +  +  A  
Sbjct: 110 -DVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVS-----WNAMVSGFACSRDMSAAEE 163

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           + +N P + DA +W A+     + G M++G V
Sbjct: 164 WFRNAPEKGDAVLWTAM-----VSGYMDIGNV 190


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/543 (41%), Positives = 324/543 (59%), Gaps = 2/543 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N+   N LI    K G +  A  +FD+M  R+V +WN+++A          +  FF  M+
Sbjct: 107 NVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMR 166

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + G+ PD   L S+    A L D  + R VH +++R G    D+ +GN++  MY + G +
Sbjct: 167 REGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSG-MDSDMCVGNSLAHMYMRCGCL 225

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
               AV   LP   ++S+NT I G  QNG +  A+E F MM    E+ P+  T+VS +  
Sbjct: 226 AEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGV-EVAPDVVTFVSAISC 284

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S + AL QG ++HA+VIK  +   V V T LV MY +CG + D+  ++           
Sbjct: 285 CSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLL 344

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           +A+IS  G HGQG KA+  F+QM++ G  P+ +TF++LL ACSHSGL  EG  +F +M +
Sbjct: 345 SAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTK 404

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
            +G +P +KHY C+VDL GR+G L  A   I +MPVR D  IW  LL AC+   N ++  
Sbjct: 405 TYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAE 464

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             ++R+ E D  +   YVL+SNI A   +W  V EVR + R++ ++K PG S +E   +V
Sbjct: 465 RIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQV 524

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
             F TG+++HP+  +I + L+ +  K++  GY PD + V  D+E++EKE  LT HSE+LA
Sbjct: 525 HQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLA 584

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           IAF  ++ P   PI++ KNLRVC DCH   K ISQ+T REI+VRD +RFHHF+DG CSCG
Sbjct: 585 IAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCG 644

Query: 703 DYW 705
           DYW
Sbjct: 645 DYW 647



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 216/459 (47%), Gaps = 45/459 (9%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 68
           GRL +A+   ++  L S    D   F  + +ACR +   +++H      G   D F   +
Sbjct: 27  GRLKDALHHPFRGVLWS----DASLFSHIFRACRAIPLLRQLHAFAATSGAAADRFTTNN 82

Query: 69  LLHMYCRFG-------------LANV------------------ARKLFDDMPVRDSGSW 97
           LL  Y   G               NV                  AR+LFD MP R+  +W
Sbjct: 83  LLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATW 142

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           NAM++G    G   ++L     MR EG+  D   + S+   CA   +++SG  +H Y+V+
Sbjct: 143 NAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVR 202

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
            G++ ++ V N+L +MY + G +     V   +    +VS+N+ IA   Q+ D   A  +
Sbjct: 203 SGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEY 262

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMY 276
           F+ M+   + PD++T VS  S  + L      + VH  +++ G  ++ V+ +  ++V MY
Sbjct: 263 FSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAG--VDKVVPVITSLVHMY 320

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGT 335
           ++ G +  +  V++G    D+   + +I+    +G   +A+E+F QMM    E  PN+ T
Sbjct: 321 SRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE--PNEVT 378

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQ 393
           ++++L A SH G   +G++    + K    F   V    C+VD+ G+ G +D+A +L   
Sbjct: 379 FLALLYACSHSGLKDEGLEFFELMTKT-YGFQPSVKHYNCIVDLLGRSGCLDEAEALILS 437

Query: 394 VP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           +P R+  V W  ++S        D A     ++++   R
Sbjct: 438 MPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPR 476


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/708 (34%), Positives = 381/708 (53%), Gaps = 72/708 (10%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           + F     LH+  R+ L      LFD MP        A+ + +  S      L +   MR
Sbjct: 43  NCFTPTDPLHL--RYALC-----LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMR 95

Query: 122 LEGVSMDPITVASILPVCARSD-NILSGLLIHLYIVKHGLEFNL-FVSNNLINMYAKFGM 179
             GV  D  T   +   CAR   ++L   ++H    +  L   +  VSN +I+MY + G+
Sbjct: 96  RTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGL 155

Query: 180 MRHALRVFDQMM-------------------------------ERDVVSWNSIIAAYEQS 208
              A R FD +                                 R+V+SW  +I+ Y ++
Sbjct: 156 AGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRA 215

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                A   F +M   GI+PD +T++ L S  AQL D    RS+H  +  +G  M   ++
Sbjct: 216 GRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLV 275

Query: 269 -------------------------------GNAVVDMYAKLGIINSACAVFEGLPVKDV 297
                                           NA++D Y KLG ++ A  +F+ +  +D+
Sbjct: 276 VALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDL 335

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +++N+LITGY   G   EA+ +F  M   +++  +  T VS+L A + +GAL QG  +HA
Sbjct: 336 VTFNSLITGYIHGGRLREALLLFMQMRR-HDLRADNFTMVSLLTACASLGALPQGRALHA 394

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            + +  +  D+++ T L+DMY KCGR+++A  +F  +       W+A+I+    +G G  
Sbjct: 395 CIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKA 454

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL +F  M  +G +P+ +T++++LTACSHS L+ EG+ YF  M+    I+P ++HYGCM+
Sbjct: 455 ALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMI 514

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G L  A + ++ MP++P+A IW ++L ACR+H +  L   A++ L +++ +   
Sbjct: 515 DLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDA 574

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YV + NIY +  +WE   ++R L  +RG+KK  G+SSI V  +V  F   +RTHP+  +
Sbjct: 575 VYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIME 634

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           I   +  +T ++KS+GY P  S +  DV+E+EKEH L +HSE++AIAFG+IS  P  P+ 
Sbjct: 635 ITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLH 694

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCH+  K IS+I  REIIVRD +RFHHF+DG CSC D+W
Sbjct: 695 IIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 243/523 (46%), Gaps = 80/523 (15%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR----NLVDGKKIHCSVLKLGFEWDV-FVAASLLHM 72
            Y+    +G+  D +TF  + K C     +++  + +H +  +      V  V+  ++HM
Sbjct: 90  LYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHM 149

Query: 73  YCRFGLANVARKLFDDMPVRD--------SG-----------------------SWNAMI 101
           Y   GLA  AR+ FDD+PV+D        SG                       SW  +I
Sbjct: 150 YVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLI 209

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SGY ++G A EA+D  + M  +G+  D +TV  +L  CA+  +++ G  +H  + + G+ 
Sbjct: 210 SGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGML 269

Query: 162 FNLFVSNNLINMYAKFGMMRHALRV--------------------------------FDQ 189
            +  +   LI+MYAK G +  A  V                                FDQ
Sbjct: 270 MSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQ 329

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M +RD+V++NS+I  Y        A   F  M++  ++ D  T+VSL +  A L      
Sbjct: 330 MEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQG 389

Query: 250 RSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
           R++H  I +R   +E D+ +G A++DMY K G +  A  VF+ + V+DV +W+ +I G A
Sbjct: 390 RALHACIEQR--LVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLA 447

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI--HARVIKNCLCF 366
            NG+   A+E F  M + +   PN  TY++IL A SH   L +G       R++ N    
Sbjct: 448 FNGMGKAALEYFFWM-KVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPL 506

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            +    C++D+ G+ G +D+AM L   +P + ++V W +I+S   +H   + A N    +
Sbjct: 507 -IEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHL 565

Query: 426 LDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
           L   + PD    +V L      S    +  +   +M EE G+K
Sbjct: 566 LK--LEPDEDAVYVQLYNIYIDSRQWEDASQIRRLM-EERGVK 605



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 175/374 (46%), Gaps = 62/374 (16%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLK- 56
           +IS Y R GR +EAVDCF    L+ G+ PD  T   +L AC   ++LV G+ +H  V + 
Sbjct: 208 LISGYSRAGRAAEAVDCFNSM-LSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEK 266

Query: 57  ---------------------LGFEWDVFVAA----------SLLHMYCRFGLANVARKL 85
                                +G  W+VF A           +++  YC+ G  +VAR L
Sbjct: 267 GMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYL 326

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD M  RD  ++N++I+GY   G   EAL +  +MR   +  D  T+ S+L  CA    +
Sbjct: 327 FDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGAL 386

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  +H  I +  +E ++++   L++MY K G +  A  VF  M  RDV +W+++IA  
Sbjct: 387 PQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGL 446

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFM 263
             +     A  +F  M+  G QP+ +T +++ +  +           H  ++  G  +F 
Sbjct: 447 AFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACS-----------HSCLLDEGRLYFE 495

Query: 264 EDVIIGN---------AVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQN 310
           E  ++ N          ++D+  + G+++ A  +   +P++ + + W ++++    +   
Sbjct: 496 EMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDA 555

Query: 311 GLASEAIEVFQMME 324
            LA  A E    +E
Sbjct: 556 NLARNAAEHLLKLE 569



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 187/451 (41%), Gaps = 79/451 (17%)

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG--MMRHALRVFDQMMERDVVSWNSII 202
           + SG L+H     H L       N+L+N +       +R+AL +FD+M     +   ++ 
Sbjct: 23  VASGRLLHPPSASHLL-------NSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALR 75

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ-LNDCRNSRSVHGFIMRRGW 261
           A +  S+ P +    +  M++ G+  D  T   L    A+        + +H    R   
Sbjct: 76  ACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTML 135

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD------------------------- 296
                ++ N ++ MY +LG+   A   F+ +PVKD                         
Sbjct: 136 PSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLR 195

Query: 297 ------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
                 VISW  LI+GY++ G A+EA++ F  M   + I P++ T + +L A + +  L 
Sbjct: 196 HSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLS-DGIEPDEVTVIGLLSACAQLKDLV 254

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI-------------------------- 384
            G  +H  V +  +     +   L+DMY KCG I                          
Sbjct: 255 FGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGY 314

Query: 385 ------DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
                 D A  LF Q+     V +N++I+ +   G+  +AL  F QM    +R D+ T V
Sbjct: 315 CKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMV 374

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           SLLTAC+  G + +G R  H   E+  ++  +     ++D++ + G +  A    Q M V
Sbjct: 375 SLLTACASLGALPQG-RALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSV 433

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLF 529
           R D   W A++     +G   +G  A +  F
Sbjct: 434 R-DVHTWSAMIAGLAFNG---MGKAALEYFF 460


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/646 (36%), Positives = 347/646 (53%), Gaps = 77/646 (11%)

Query: 135 ILPVCARSDNILS-GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM-- 191
           +LP   +S   L     +H      GL  + FV+++L++ Y + G   +A  +FD M   
Sbjct: 22  LLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRP 81

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNS- 249
           +R VV W++++AA+    D   A      M++  G++P+++T   L S + +    R++ 
Sbjct: 82  QRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAV 141

Query: 250 -----------------------------------RSVHGFIMRRGWFMEDVIIGNAVVD 274
                                              + +HG+ ++ G    D  +  A++D
Sbjct: 142 VALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAG-CRADACVVTALID 200

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYA-------------------------- 308
           MY K G       VF+     DV S N LI G +                          
Sbjct: 201 MYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVS 260

Query: 309 ---------QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
                    QNG   EA+E F+ M+      PN  T   +LPA+++V AL  G   H   
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQ-AQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFA 319

Query: 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419
           ++     DV+V++ LVDMY KCGR+ DA  +F  +   + V WNA+I  + ++G+   A+
Sbjct: 320 LRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAV 379

Query: 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479
             F  ML    +PD +TF  LL AC+ +GL  EG+ YF  M  E+G+ P ++HY CMV L
Sbjct: 380 WMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTL 439

Query: 480 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539
            GRAG L  A++ I +MP  PDA IWG+LLG+CR+HGN++L  VA+++LF ++ EN G Y
Sbjct: 440 LGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNY 499

Query: 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIY 599
           VL+SNIYA+   W+ V+ VR + +D GLKK  G S IE+ NKV +   G+ +HP    I 
Sbjct: 500 VLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAII 559

Query: 600 DELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIF 659
           +++  L  +M+ LG+VP   FVL DVEE EK+ IL  HSE+LA+A G+IS+ P + +++ 
Sbjct: 560 EKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVI 619

Query: 660 KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           KNLR+CGDCH   KFIS    REI VRD+NRFHHF  G CSCGD+W
Sbjct: 620 KNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 205/478 (42%), Gaps = 80/478 (16%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
            + F       PD +  P   K+C  L   + +H      G   D FVA+SLLH Y R G
Sbjct: 7   LHHFLRHVSFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLG 66

Query: 78  LANVARKLFDDMPV--------------------------------RDSG------SWNA 99
               AR LFD MP                                 RD G      +WN 
Sbjct: 67  TTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNG 126

Query: 100 MISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKH 158
           ++SG  +SG A +A+  L  M  EG+   D   V+  L        +  G  +H Y VK 
Sbjct: 127 LVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKA 186

Query: 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQM---------------------------- 190
           G   +  V   LI+MY K G     +RVFD+                             
Sbjct: 187 GCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLF 246

Query: 191 -------MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
                  +E +VVSW SI+A   Q+   + A  FF  MQ  G +P+ +T+  +    A +
Sbjct: 247 KEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANV 306

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
               + RS H F +R+G F+ DV + +A+VDMYAK G +  A  +F+ +  ++V+SWN +
Sbjct: 307 AALMHGRSAHCFALRKG-FLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAM 365

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I GYA  G A  A+ +F  M +C +  P+  T+  +L A +  G   +G + + + + N 
Sbjct: 366 IGGYAMYGEAVNAVWMFHSMLKCKQ-KPDMVTFTCLLAACTQAGLTEEG-RHYFKEMHNE 423

Query: 364 LCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
                 +    C+V + G+ G++D+A  L   +P    +  W +++    +HG  D A
Sbjct: 424 YGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 164/387 (42%), Gaps = 49/387 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVD-GKKIHCSVLKL 57
           ++S   R GR  +AV           LRPD       L A  +  LV  G+++H   +K 
Sbjct: 127 LVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKA 186

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC------------ 105
           G   D  V  +L+ MY + G A    ++FD+    D  S NA+I+G              
Sbjct: 187 GCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLF 246

Query: 106 -----------------------QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
                                  Q+G  +EA++   EM+ +G   + +T+  +LP  A  
Sbjct: 247 KEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANV 306

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             ++ G   H + ++ G   +++VS+ L++MYAK G ++ A  +FD M+ R+VVSWN++I
Sbjct: 307 AALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMI 366

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             Y    + + A   F +M +   +PD++T   L +   Q       R     +      
Sbjct: 367 GGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGV 426

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNG---LASEAIE 318
              +     +V +  + G ++ A  +   +P + D   W +L+     +G   LA  A E
Sbjct: 427 SPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAE 486

Query: 319 -VFQMMEECNEINPNQGTYVSILPAYS 344
            +F +  E      N G YV +   Y+
Sbjct: 487 KLFHLEPE------NAGNYVLLSNIYA 507


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 364/613 (59%), Gaps = 3/613 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI  Y R G    A    Y      G++P   T   +L     LV  + +H  V++ GF 
Sbjct: 120 MIGCYTRAGEHDVAFS-MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFG 178

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV +A S+L++YC+ G    A+ LF+ M  RD  SWN+++SGY Q GN  E L +L  M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + +G+  D  T  S++   A    +  G ++H +I++ GLE +  +  +LI MY K G +
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A R+F+ MM +DV+SW ++I+   Q++    A   F  M ++ + P   T+ S+ +  
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A+L       SVHG+I+R+   + D+   N++V MYAK G +  +C+VF+ +  +D++SW
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKL-DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSW 417

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +++G+AQNG   +A+ +F  M +  +  P+  T VS+L A + +GAL QG  IH  V 
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K+CL   + + T LVDMY KCG +  A   F ++P+   V W++II+ +G HG+G+ AL 
Sbjct: 477 KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALR 536

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            +   L  G++P+H+ ++S+L+ACSH+GLV +G  +FH M ++FGI+P L+H  C+VDL 
Sbjct: 537 MYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLL 596

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            RAG +  A++F + M  +P   + G LL ACR  GN+ELG + +  +  +   N G YV
Sbjct: 597 SRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYV 656

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            +++ YA++ +W+GV EV +  +   LKK PGWS IE++  +  F+T + +HP++E+I  
Sbjct: 657 QLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIML 716

Query: 601 ELRNLTAKMKSLG 613
            L+ L ++M+ +G
Sbjct: 717 VLKILGSEMRKVG 729



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/562 (31%), Positives = 288/562 (51%), Gaps = 26/562 (4%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y   L++   PD +TFP ++KAC +L     G   H  V+  G+  D ++A SL++ Y +
Sbjct: 36  YSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSK 95

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           FG    ARK+FD M  R+   W  MI  Y ++G    A  + + MR +G+    +T+   
Sbjct: 96  FGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTML-- 153

Query: 136 LPVCARSDNILSGLL-------IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
                    +LSG+L       +H  ++++G   ++ ++N+++N+Y K G +  A  +F+
Sbjct: 154 --------GLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFE 205

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  RDV+SWNS+++ Y Q  +          M+  GI+PD  T  SL S  A  +    
Sbjct: 206 LMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGV 265

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + VHG I+R G   +D  I  +++ MY K G +NSA  +FEG+  KDVISW  +I+G  
Sbjct: 266 GKMVHGHILRAG-LEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           QN  A  A+ VF+ M + + + P+  T  S+L A + +G+   G  +H  +++  +  D+
Sbjct: 325 QNDCADMAVTVFRRMLK-SRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDI 383

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
                LV MY KCG ++ + S+F ++ R   V WNAI+S H  +G   KAL  F +M   
Sbjct: 384 PSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKA 443

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
             RPD IT VSLL AC+  G + +G ++ H    +  + P +     +VD++ + G LG 
Sbjct: 444 RQRPDSITVVSLLQACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGS 502

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELG-AVASDRLFE-VDSENVGYYVLMSNIY 546
           A      MP + D   W +++     HG  E    + SD L   +   +V Y  ++S   
Sbjct: 503 AQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561

Query: 547 ANVGKWEGVDEVRSLARDRGLK 568
            N    +G+    S+ +D G++
Sbjct: 562 HNGLVDQGLSFFHSMTKDFGIE 583



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 218/424 (51%), Gaps = 9/424 (2%)

Query: 96  SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           S+NA+I+    +G   + L     M       D  T  S++  C   D    GL  H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           +  G   + +++ +LIN Y+KFG  + A +VFD M +R+VV W ++I  Y ++ +   A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             +  M++ GIQP  +T++ L S V +L    + + +H  +++ G F  DV + N+++++
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLEL---VHLQCLHACVIQYG-FGSDVALANSMLNV 190

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K G +  A A+FE +  +DVISWN+L++GYAQ G   E +++   M+  + I P+Q T
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKT-DGIEPDQQT 249

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           + S++ A +    L  G  +H  +++  L  D  + T L+ MY KCG ++ A  +F  + 
Sbjct: 250 FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
               + W A+IS    +   D A+  FR+ML   V P   T  S+L AC+  G    G  
Sbjct: 310 HKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS 369

Query: 456 -YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            + +++++   IK  +     +V ++ + GHL  + +    M  R D   W A++     
Sbjct: 370 VHGYILRQR--IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQ 426

Query: 515 HGNM 518
           +G++
Sbjct: 427 NGHL 430


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/594 (39%), Positives = 346/594 (58%), Gaps = 25/594 (4%)

Query: 117 LDEMRLEGVSMDPIT-VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           L +   E  S+ P+  + S++P C     +     I  Y +K   + N  V    IN   
Sbjct: 13  LTKPNTETTSLLPLPHLISLIPKCTTLKELKQ---IQAYTIKTNYQNNTNVITKFINFCT 69

Query: 176 K---FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
                  M HA ++FDQ+ + ++V +N++   Y + NDP+     F            L 
Sbjct: 70  SNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRR---------CLR 120

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           LVS    +A+       + +H F ++ G   +++ +   +++MY   G I+++  VF+ +
Sbjct: 121 LVSKVKALAE------GKQLHCFAVKLG-VSDNMYVVPTLINMYTACGDIDASRRVFDKI 173

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
               V+++N +I   A+N  A+EA+ +F+ ++E   + P   T + +L + + +G+L  G
Sbjct: 174 DEPCVVAYNAIIMSLARNNRANEALALFRELQEIG-LKPTDVTMLVVLSSCALLGSLDLG 232

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
             +H  V K      V V T L+DMY KCG +DDA+++F  +P+  +  W+AII  +  H
Sbjct: 233 RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATH 292

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           G G +A++   +M  E V+PD ITF+ +L ACSH+GLV EG  YFH M  E+GI P +KH
Sbjct: 293 GDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKH 352

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           YGCMVDL GRAG L  A+ FI  +P++P   +W  LL AC  HGN+E+G    +R+FE+D
Sbjct: 353 YGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELD 412

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
             + G YV+ SN+ A  GKW+ V+ +R    D+G  K PG SSIEVNN V  F+ G   H
Sbjct: 413 DSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVH 472

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVL-QDVEEDEKEHILTSHSERLAIAFGIISSP 651
                ++  L  L  ++KS GYVPD S V   D+E++EKE IL  HSE+LAI FG++++P
Sbjct: 473 STSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTP 532

Query: 652 PKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           P + I++ KNLRVCGDCHN  KFIS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 533 PGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 153/307 (49%), Gaps = 13/307 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS 96
           ++   + L +GK++HC  +KLG   +++V  +L++MY   G  + +R++FD +      +
Sbjct: 121 LVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVA 180

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           +NA+I    ++  A EAL +  E++  G+    +T+  +L  CA   ++  G  +H Y+ 
Sbjct: 181 YNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVK 240

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K+G +  + V+  LI+MYAK G +  A+ VF  M +RD  +W++II AY    D   A  
Sbjct: 241 KYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAIS 300

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----A 271
               M++  +QPD +T + +    +      N     GF    G   E  I+ +      
Sbjct: 301 MLNEMKKEKVQPDEITFLGILYACSH-----NGLVEEGFEYFHGMTNEYGIVPSIKHYGC 355

Query: 272 VVDMYAKLGIINSACAVFEGLPVKDV-ISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           +VD+  + G ++ A    + LP+K   I W TL++  + +G       V + + E ++  
Sbjct: 356 MVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDD-- 413

Query: 331 PNQGTYV 337
            + G YV
Sbjct: 414 SHGGDYV 420


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 349/624 (55%), Gaps = 10/624 (1%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           A KLFD M VRD  SWN+MI G    GN   A  + DEM  + V      V   L    R
Sbjct: 62  ALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKF-GR 120

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
            +     L   L++  H  +   +  N +++ Y + G +   +R+F++M  RDV+SW S+
Sbjct: 121 VE-----LAQRLFLDMHVKDVAAW--NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSM 173

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I   + +     A   F  M ++G++P   T   + S  A   +      VHG +++ G 
Sbjct: 174 IGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGC 233

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F  +  I  +++  YA    I  A  +F     K+V+ W  L+T Y  N    +A+ VF 
Sbjct: 234 FFHE-FISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFG 292

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M +   + PNQ T+   L A   + AL +G +IH   IK  L  DVFV   LV MY +C
Sbjct: 293 DMTKMGAL-PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTEC 351

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G ++ A+++F  +     V WN+II     HG G  AL FF QM+  GV P+ ITF  LL
Sbjct: 352 GNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLL 411

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +ACS SG++ +G+ +F  +          +HY CMVD+ GR G L  A   ++ MPV+ +
Sbjct: 412 SACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKAN 471

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           + IW ALL ACR+H N+E+   A+  + +++      YVL+SNIYA+ G+W  V  +R  
Sbjct: 472 SMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVK 531

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            +  GL K PG S + +  K   F + +R+HP  E+IY++L  L  K+K  GYVPD+ F 
Sbjct: 532 MKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFA 591

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DVE+++KE +L+ HSERLAIAFG++S+   S I + KNLRVCGDCH+  K +S+I  R
Sbjct: 592 LHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGR 651

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           +I+VRDS RFHHFK+GICSC DYW
Sbjct: 652 KIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 8/370 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV    +++H Y   G      +LF++MPVRD  SW +MI G   +G + EAL +  +M 
Sbjct: 135 DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKML 194

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
             GV     T A +L  CA +     G+ +H ++VK G  F+ F+S +LI  YA    + 
Sbjct: 195 RSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIE 254

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
           HA ++F++ + ++VV W +++ AY  +N    A   F  M + G  P+  T         
Sbjct: 255 HAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACC 314

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L      + +H   ++ G    DV +GN++V MY + G +NSA AVF  +  KD++SWN
Sbjct: 315 GLEALDKGKEIHTMAIKLG-LETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWN 373

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG---IKIHAR 358
           ++I G AQ+G    A+  F  M     ++PN+ T+  +L A S  G L +G    +  +R
Sbjct: 374 SIIVGSAQHGFGLWALIFFNQMIR-RGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISR 432

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDK 417
              N L    +   C+VD+ G+CG++D+A  L   +P +++S+ W A++S   +H   + 
Sbjct: 433 YKSNVLRPQHY--ACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEV 490

Query: 418 ALNFFRQMLD 427
           A    + +LD
Sbjct: 491 AERAAKHILD 500



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 164/355 (46%), Gaps = 14/355 (3%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           NL +   +I  Y +   +  AL++FD+M  RDVVSWNS+I       +   A   F  M 
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP 101

Query: 223 QAGIQPDLLTLVSLTSIV-AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           +  +       +S T++V   L   R   +   F+      ++DV   NA+V  Y + G 
Sbjct: 102 EKNV-------ISWTTMVNGYLKFGRVELAQRLFL---DMHVKDVAAWNAMVHGYFENGR 151

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +     +FE +PV+DVISW ++I G   NG + EA+ VF+ M     + P   T+  +L 
Sbjct: 152 VEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSG-VEPTWSTFACVLS 210

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           A ++      G+++H  V+K    F  F++  L+  Y  C +I+ A  +F +    + V 
Sbjct: 211 ACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVK 270

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           W A+++ +  + +   AL  F  M   G  P+  TF   L AC     + +G+   H M 
Sbjct: 271 WTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKE-IHTMA 329

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            + G++  +     +V ++   G++  A    +N+    D   W +++     HG
Sbjct: 330 IKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHG 383



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 11/305 (3%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFV 65
           G+  EA+  F +  L SG+ P + TF  VL AC N V+   G ++H  V+KLG  +  F+
Sbjct: 181 GKSEEALFVFKKM-LRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFI 239

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           + SL+  Y        A K+F++   ++   W A+++ Y  +    +AL +  +M   G 
Sbjct: 240 SVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA 299

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             +  T +  L  C   + +  G  IH   +K GLE ++FV N+L+ MY + G +  A+ 
Sbjct: 300 LPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVA 359

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           VF  + E+D+VSWNSII    Q    + A  FF  M + G+ P+ +T   L S  ++   
Sbjct: 360 VFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGM 419

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGN---AVVDMYAKLGIINSACAVFEGLPVK-DVISWN 301
               R    +I R   +  +V+       +VD+  + G ++ A  +   +PVK + + W 
Sbjct: 420 LLKGRCFFEYISR---YKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWL 476

Query: 302 TLITG 306
            L++ 
Sbjct: 477 ALLSA 481



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 127/288 (44%), Gaps = 45/288 (15%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME---------------EC 326
           ++ A  +F+ +P  ++  +  +I GY +N    +A+++F  M                +C
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 327 NEI-----------NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
             +             N  ++ +++  Y   G     +++  R+  +    DV     +V
Sbjct: 88  GNLGMATRLFDEMPEKNVISWTTMVNGYLKFGR----VELAQRLFLDMHVKDVAAWNAMV 143

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
             Y + GR+++ + LF ++P    + W ++I    ++G+ ++AL  F++ML  GV P   
Sbjct: 144 HGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWS 203

Query: 436 TFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           TF  +L+AC+++   + G Q + H+++   G   H      ++  +     +  AH  I 
Sbjct: 204 TFACVLSACANAVEFNLGVQVHGHVVK--LGCFFHEFISVSLITFYANCMKIEHAHK-IF 260

Query: 495 NMPVRPDASIWGALLG----------ACRIHGNM-ELGAVASDRLFEV 531
           N  +  +   W ALL           A R+ G+M ++GA+ +   F +
Sbjct: 261 NETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSI 308


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 339/560 (60%), Gaps = 9/560 (1%)

Query: 151 IHLYIVKHGLEFNLFVS---NNLINMYA-KFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           +H ++   G +F L +S   + L+ +YA   G +  A+  F Q+       WN+II  + 
Sbjct: 23  LHAHLFTTG-QFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFI 81

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           QS +P  A  ++ +M     + D LT   +    A++     S  +H  I+R+G F+ D 
Sbjct: 82  QSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKG-FIADA 140

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           ++G  ++D+YAK+G I+SA  VF+ +  +D+ SWN LI+G+AQ    +EA+ +F+ ME  
Sbjct: 141 LLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRME-I 199

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
           +   PN+ + +  L A + +G  ++G KIH  +       +  V   ++DMY KCG +D 
Sbjct: 200 DGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDK 259

Query: 387 AMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           A  +F  +  R   V WN +I    +HG+G KAL  F +M   GV PD ++++++L AC+
Sbjct: 260 AYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACN 319

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H GLV EG R F+ M E  G+KP++KHYG +VDL GRAG L  A++ + +MP  PD  +W
Sbjct: 320 HGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLW 378

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             LLGA R H N+E+    S +L E+ S + G +VL+SN+YA   +W  V  VR   ++R
Sbjct: 379 QTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNR 438

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
            +KK PG S IE N  +  FY  +++H  + +IY +L  +  ++K  GYV + SFVL D+
Sbjct: 439 DVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDI 498

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            E++KE++L  HSE+LA+AFG+IS+   +PIQ+ KNLR+CGDCH   K IS+I +REIIV
Sbjct: 499 GEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIV 558

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD  RFH FK+G CSC DYW
Sbjct: 559 RDRVRFHRFKEGFCSCRDYW 578



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 206/388 (53%), Gaps = 9/388 (2%)

Query: 48  KKIHCSVLKLG-FEWDVFVAAS-LLHMYC-RFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           K++H  +   G F   +  A S LL +Y    G  + A   F  +    +  WNA+I G+
Sbjct: 21  KQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGF 80

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            QS N   A      M  +   +D +T + +L  CAR    L  + IH +IV+ G   + 
Sbjct: 81  IQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADA 140

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            +   L+++YAK G +  A +VFD+M++RD+ SWN++I+ + Q + P  A   F  M+  
Sbjct: 141 LLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEID 200

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G +P+ ++++   S  AQL D +    +HG+I    + M +  + N V+DMYAK G ++ 
Sbjct: 201 GFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDM-NAQVCNVVIDMYAKCGFVDK 259

Query: 285 ACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           A  VFE +   KD+++WNT+I  +A +G   +A+E+F+ M++   ++P+  +Y+++L A 
Sbjct: 260 AYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSG-VSPDDVSYLAVLCAC 318

Query: 344 SHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS-VP 401
           +H G + +G ++    ++NC +  +V     +VD+ G+ GR+ +A  +   +P     V 
Sbjct: 319 NHGGLVEEGFRLF-NSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVL 377

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEG 429
           W  ++     H   + A    R++++ G
Sbjct: 378 WQTLLGASRTHRNVEIAETVSRKLVEMG 405



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS + +  + +EA+  F +  +  G +P+  +    L AC  L D   G+KIH  +   
Sbjct: 177 LISGFAQGSKPTEALSLFKRMEI-DGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVE 235

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
            F+ +  V   ++ MY + G  + A  +F+ M  R D  +WN MI  +   G   +AL++
Sbjct: 236 RFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALEL 295

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            ++M   GVS D ++  ++L  C     +  G  +   +   G++ N+    +++++  +
Sbjct: 296 FEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGR 355

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  + + M    D+V W +++ A
Sbjct: 356 AGRLHEAYDIVNSMPTVPDIVLWQTLLGA 384


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 354/606 (58%), Gaps = 52/606 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGM----MRHALRVFDQMMERDVVSWNSIIAAYE 206
           IH   +K G   +   +  ++   A   +    + +A ++F+QM +R+  SWN+II  + 
Sbjct: 42  IHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFS 101

Query: 207 QSNDP---ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW-- 261
           +S++    I    F+  M    ++P+  T  S+    A+    +  + +HG  ++ G+  
Sbjct: 102 ESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGG 161

Query: 262 ----------------FMED--------------------------VIIGNAVVDMYAKL 279
                           FM+D                          +++ N ++D Y +L
Sbjct: 162 DEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRL 221

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G   +A  +F+ +  + V+SWNT+I+GY+ NG   +A+EVF+ M++  +I PN  T VS+
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK-GDIRPNYVTLVSV 280

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           LPA S +G+L  G  +H     + +  D  + + L+DMY KCG I+ A+ +F ++PR + 
Sbjct: 281 LPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENV 340

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           + W+A+I+   IHGQ   A++ F +M   GVRP  + +++LLTACSH GLV EG+RYF  
Sbjct: 341 ITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQ 400

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           M    G++P ++HYGCMVDL GR+G L  A  FI NMP++PD  IW ALLGACR+ GN+E
Sbjct: 401 MVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVE 460

Query: 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 579
           +G   ++ L ++   + G YV +SN+YA+ G W  V E+R   +++ ++K PG S I+++
Sbjct: 461 MGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDID 520

Query: 580 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 639
             +  F   + +HPK ++I   L  ++ K++  GY P  + VL ++EE++KE++L  HSE
Sbjct: 521 GVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSE 580

Query: 640 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 699
           ++A AFG+IS+ P  PI+I KNLR+C DCH+  K IS++ +R+I VRD  RFHHF+DG C
Sbjct: 581 KIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSC 640

Query: 700 SCGDYW 705
           SC DYW
Sbjct: 641 SCMDYW 646



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 157/566 (27%), Positives = 257/566 (45%), Gaps = 78/566 (13%)

Query: 36  PVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL----ANVARKLFDDMPV 91
           P +  CR + D  +IH   +K G   D   AA +L       L     + A K+F+ MP 
Sbjct: 28  PQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 87

Query: 92  RDSGSWNAMISGYCQSG--NAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSG 148
           R+  SWN +I G+ +S    A+ A+ +  EM   E V  +  T  S+L  CA++  I  G
Sbjct: 88  RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEG 147

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA------------------------- 183
             IH   +K+G   + FV +NL+ MY   G M+ A                         
Sbjct: 148 KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207

Query: 184 -----------LR---------VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
                      +R         +FD+M +R VVSWN++I+ Y  +     A   F  M++
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
             I+P+ +TLVS+   +++L        +H +    G  ++DV +G+A++DMY+K GII 
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGIIE 326

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
            A  VFE LP ++VI+W+ +I G+A +G A +AI+ F  M +   + P+   Y+++L A 
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTAC 385

Query: 344 SHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           SH G + +G +  ++++  + L   +    C+VD+ G+ G +D+A      +P +   V 
Sbjct: 386 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 445

Query: 402 WNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           W A++    + G    G +  N    M    V  D   +V+L    +  G  SE      
Sbjct: 446 WKALLGACRMQGNVEMGKRVANILMDM----VPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 459 MMQEEFGIKPHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL----GACR 513
            M+E    K   K  GC ++D+       G+ H F+      P A    ++L       R
Sbjct: 502 RMKE----KDIRKDPGCSLIDID------GVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

Query: 514 IHGNMELGAVASDRLFEVDSENVGYY 539
           + G   +       L E D ENV +Y
Sbjct: 552 LAGYRPITTQVLLNLEEEDKENVLHY 577



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 57/386 (14%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLL 70
           A+  FY+      + P+ +TFP VLKAC     + +GK+IH   LK GF  D FV ++L+
Sbjct: 111 AITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLV 170

Query: 71  HMYC---------------------------------------------RFGLANVARKL 85
            MY                                              R G    AR L
Sbjct: 171 RMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARML 230

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD M  R   SWN MISGY  +G   +A+++  EM+   +  + +T+ S+LP  +R  ++
Sbjct: 231 FDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSL 290

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII--- 202
             G  +HLY    G+  +  + + LI+MY+K G++  A+ VF+++   +V++W+++I   
Sbjct: 291 ELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGF 350

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A + Q+ D I     F  M+QAG++P  +  ++L +  +        R     ++     
Sbjct: 351 AIHGQAGDAIDC---FCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGL 407

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQ 321
              +     +VD+  + G+++ A      +P+K D + W  L+      G       V  
Sbjct: 408 EPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVAN 467

Query: 322 MMEECNEINPNQGTYVSILPAYSHVG 347
           ++   + +  + G YV++   Y+  G
Sbjct: 468 IL--MDMVPHDSGAYVALSNMYASQG 491



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 57/333 (17%)

Query: 239 IVAQLNDCRNSR---SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI----INSACAVFEG 291
           +  Q+N+CR  R    +H   ++ G  M D +    ++   A   +    ++ A  +F  
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSGQ-MRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQ 84

Query: 292 LPVKDVISWNTLITGYAQNG--LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
           +P ++  SWNT+I G++++    A  AI +F  M     + PN+ T+ S+L A +  G +
Sbjct: 85  MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY----------------- 392
           ++G +IH   +K     D FV + LV MY  CG + DA  LFY                 
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204

Query: 393 ----------------------------QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
                                       ++ + S V WN +IS + ++G    A+  FR+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M    +RP+++T VS+L A S  G +  G+ + H+  E+ GI+        ++D++ + G
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGE-WLHLYAEDSGIRIDDVLGSALIDMYSKCG 323

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
            +  A +  + +P R +   W A++    IHG 
Sbjct: 324 IIEKAIHVFERLP-RENVITWSAMINGFAIHGQ 355


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 340/569 (59%), Gaps = 3/569 (0%)

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           LD +    ++  P    + +  CA+S N+     IH ++       + F+ N+LI++Y K
Sbjct: 39  LDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCK 98

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +  A +VFD+M  +D+VSW S+IA Y Q++ P  A G    M +   +P+  T  SL
Sbjct: 99  CGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASL 158

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
              V    D      +H   ++  W  EDV +G+A++DMYA+ G ++ A AVF+ L  K+
Sbjct: 159 LKAVGAYADSGIGGQIHALAVKCDWH-EDVYVGSALLDMYARCGKMDMATAVFDKLDSKN 217

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +SWN LI+G+A+ G    A+ VF  M+  N       TY SI  A + +GAL QG  +H
Sbjct: 218 GVSWNALISGFARKGDGETALMVFAEMQR-NGFEATHFTYSSIFSALAGIGALEQGKWVH 276

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
           A +IK+      FV   ++DMY K G + DA  +F +V     V WN++++    +G G 
Sbjct: 277 AHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGK 336

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           +A++ F +M   G+  + I+F+ +LTACSH GLV EG+ YF M++E + ++P ++HY  +
Sbjct: 337 EAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTV 395

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GRAG L  A  FI  MP+ P A++WGALL ACR+H N ++G  A+D +F++D ++ 
Sbjct: 396 VDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDS 455

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G  VL+ NIYA+ G W+    VR + +  G+KK P  S +E+ N V +F   + THP+ E
Sbjct: 456 GPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAE 515

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPI 656
           +IY     ++ K++  GYVPD  +VL  V+E E+E  L  HSE++A+AF +I  P  + I
Sbjct: 516 EIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATI 575

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +I KN+R+CGDCH+  K+IS++ EREI++
Sbjct: 576 RIMKNIRICGDCHSAFKYISKVFEREIVI 604



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 212/396 (53%), Gaps = 9/396 (2%)

Query: 23  LTSG-LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78
           L SG L P    +   + AC   +NL D +KIH  +    F  D F+  SL+H+YC+ G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGS 101

Query: 79  ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL-P 137
              A K+FD M  +D  SW ++I+GY Q+    EA+ +L  M       +  T AS+L  
Sbjct: 102 VVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
           V A +D+ + G  IH   VK     +++V + L++MYA+ G M  A  VFD++  ++ VS
Sbjct: 162 VGAYADSGIGG-QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++I+ + +  D  TA   F  MQ+ G +    T  S+ S +A +      + VH  ++
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMI 280

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           +    +    +GN ++DMYAK G +  A  VFE +  KD+++WN+++T +AQ GL  EA+
Sbjct: 281 KSRQKLT-AFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAV 339

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
             F+ M +   I  NQ +++ IL A SH G +++G      + +  L  ++     +VD+
Sbjct: 340 SHFEEMRKSG-IYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDL 398

Query: 378 YGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
            G+ G ++ A+   +++P   ++  W A+++   +H
Sbjct: 399 LGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 366/634 (57%), Gaps = 20/634 (3%)

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G+   ARK+FD MP R+  SW +M+ GY Q G   EA  +  EM    V    + +
Sbjct: 93  YVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMI 152

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
             +L      D      +I         E ++ V  N+I  Y + G +  A  +FD+M  
Sbjct: 153 GGLLKESRIDDAKKLFDMIP--------EKDVVVVTNMIGGYCQVGRLDEARELFDEMKV 204

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R+V +W ++++ Y ++     A   F  M +          VS T+++  +   ++ R  
Sbjct: 205 RNVFTWTTMVSGYAKNGRVDVARKLFEVMPER-------NEVSWTAML--MGYTQSGRMK 255

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
             F +     ++ ++  N ++  +   G ++ A  +FEG+  +D  +WN +I  + + GL
Sbjct: 256 EAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGL 315

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
             EA+ +F  M+    +  N  + +S+L   + + +L  G ++HAR++++    D++VA+
Sbjct: 316 DLEALGLFARMQR-EGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVAS 374

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            L+ MY KCG +  A  +F +      V WN++I+ +  HG G++ALN F  M   GV+P
Sbjct: 375 VLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQP 434

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
           D +TF+ +L+ACS+SG V EG   F  M+  + ++P ++HY CMVDL GRAG +  A   
Sbjct: 435 DEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMEL 494

Query: 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552
           ++ MP+ PDA +WGALLGACR H  ++L  VA ++L +++ +N G YVL+S++YA  G+W
Sbjct: 495 VEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRW 554

Query: 553 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN-RTHPKYEKIYDELRNLTAKMKS 611
             V+ +R    +R + K PG S IEV  KV +F  G+ ++HP+   I   L  L+  ++ 
Sbjct: 555 RDVEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLRE 613

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY PD SFVL DV+E+EK H L  HSERLA+A+G++  P   PI++ KNLRVCGDCH+ 
Sbjct: 614 AGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSA 673

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K I+++T REII+RD+NRFHHFKDG CSC D+W
Sbjct: 674 IKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 217/423 (51%), Gaps = 24/423 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  YV+ G + EA   F++    + +         +LK  R + D KK+      +  E
Sbjct: 120 MVRGYVQEGMVEEAEKLFWEMPRRNVVSWTV-MIGGLLKESR-IDDAKKL----FDMIPE 173

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV V  +++  YC+ G  + AR+LFD+M VR+  +W  M+SGY ++G    A  + + M
Sbjct: 174 KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM 233

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAKFGM 179
                  + ++  ++L    +     SG +   + +   +     V+ N +I  +   G 
Sbjct: 234 ----PERNEVSWTAMLMGYTQ-----SGRMKEAFELFEAMPVKWIVACNEMILQFGLAGE 284

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           M  A  +F+ M ERD  +WN++I  +E+    + A G F  MQ+ G+  +  +++S+ S+
Sbjct: 285 MHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSV 344

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A L    + R VH  ++R   F +D+ + + ++ MY K G +  A  +F     KDV+ 
Sbjct: 345 CASLASLDHGRQVHARLVRSE-FDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVM 403

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WN++ITGY+Q+GL  EA+ VF  M  C+  + P++ T++ +L A S+ G +++G +I   
Sbjct: 404 WNSMITGYSQHGLGEEALNVFHDM--CSSGVQPDEVTFIGVLSACSYSGKVKEGFEIF-E 460

Query: 359 VIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQG 415
            +K     +  +    C+VD+ G+ GR+D+AM L  ++P    ++ W A++     H + 
Sbjct: 461 AMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKL 520

Query: 416 DKA 418
           D A
Sbjct: 521 DLA 523



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 206/459 (44%), Gaps = 75/459 (16%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
            S +  Y R G  + ARK+FD+ P+  R   SWNAM+S Y +S    +AL + D+M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP--- 79

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
                                               + N    N +I+ Y K GM+  A 
Sbjct: 80  ------------------------------------QRNTVSFNGMISGYVKNGMVADAR 103

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL- 243
           +VFD M ER+VVSW S++  Y Q      A   F  M +  +       VS T ++  L 
Sbjct: 104 KVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV-------VSWTVMIGGLL 156

Query: 244 --NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
             +   +++ +   I  +     DV++   ++  Y ++G ++ A  +F+ + V++V +W 
Sbjct: 157 KESRIDDAKKLFDMIPEK-----DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWT 211

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVI 360
           T+++GYA+NG    A ++F++M E NE+     ++ ++L  Y+  G +++  ++  A  +
Sbjct: 212 TMVSGYAKNGRVDVARKLFEVMPERNEV-----SWTAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 361 KNCLCFDVFVATC--LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           K       ++  C  ++  +G  G +  A  +F  +       WNA+I      G   +A
Sbjct: 267 K-------WIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEA 319

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMV 477
           L  F +M  EGV  +  + +S+L+ C+    +  G Q +  +++ EF     L     ++
Sbjct: 320 LGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEF--DQDLYVASVLI 377

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++ + G L  A   I N  +  D  +W +++     HG
Sbjct: 378 TMYVKCGDLVRAKG-IFNRFLFKDVVMWNSMITGYSQHG 415



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 139/326 (42%), Gaps = 50/326 (15%)

Query: 214 AHGFFTTMQQAGIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            +G+  T++   +Q   L +  S  S   ++ D  N+R V             +   NA+
Sbjct: 2   GYGYAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFD---NTPLPQRTIASWNAM 58

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V  Y +      A  +F+ +P ++ +S+N +I+GY +NG+ ++A +VF +M E N +   
Sbjct: 59  VSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV--- 115

Query: 333 QGTYVSILPAYSHVGALRQGIKI---------------------HARVIKNCLCF----- 366
             ++ S++  Y   G + +  K+                      +R+      F     
Sbjct: 116 --SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPE 173

Query: 367 -DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 425
            DV V T ++  Y + GR+D+A  LF ++   +   W  ++S +  +G+ D A   F  M
Sbjct: 174 KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM 233

Query: 426 LDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC--MVDLFGRA 483
            +     + +++ ++L   + SG + E    F  M  ++ +        C  M+  FG A
Sbjct: 234 PER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV-------ACNEMILQFGLA 282

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALL 509
           G +  A    + M  R D   W A++
Sbjct: 283 GEMHRARMMFEGMKER-DEGTWNAMI 307


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 335/557 (60%), Gaps = 3/557 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H +I+K GL ++ F  +NL+   A  ++G M +A  +F Q+ E     +N++I     S
Sbjct: 50  VHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNS 109

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            D   A   +  M + GI+PD  T   +    + L   +    +H  +   G  + DV +
Sbjct: 110 MDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEV-DVFV 168

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N ++ MY K G I  A  VFE +  K V SW+++I  +A   +  E + +   M     
Sbjct: 169 QNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGR 228

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
               +   VS L A +H+G+   G  IH  +++N    +V V T L+DMY KCG ++  +
Sbjct: 229 HRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGL 288

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  +   +   +  +I+   IHG+G +AL  F  ML+EG+ PD + +V +L+ACSH+G
Sbjct: 289 CVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAG 348

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG + F+ MQ E  IKP ++HYGCMVDL GRAG L  A++ I++MP++P+  +W +L
Sbjct: 349 LVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSL 408

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC++H N+E+G +A+D +F+++  N G Y++++N+YA   KW  V  +R+   ++ L 
Sbjct: 409 LSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLV 468

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           +TPG+S +E N  V  F + +++ P+ E IYD ++ +  ++K  GY PD S VL DV+ED
Sbjct: 469 QTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDED 528

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK   L  HS++LAIAF +I +   SP++I +NLR+C DCH +TKFIS I EREI VRDS
Sbjct: 529 EKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDS 588

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 589 NRFHHFKDGTCSCKDYW 605



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 194/382 (50%), Gaps = 9/382 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH--MYCRFGLANVARKLFDDMPVRDS 94
           +LK C+++ + KK+H  +LKLG  +D F  ++L+      R+G    A  +F  +    S
Sbjct: 37  LLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGS 96

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N MI G   S +  EAL +  EM   G+  D  T   +L  C+    +  G+ IH +
Sbjct: 97  FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAH 156

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           +   GLE ++FV N LI+MY K G + HA  VF+QM E+ V SW+SII A+         
Sbjct: 157 VFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 215 HGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
                 M + G  + +   LVS  S    L      R +HG ++R    + +V++  +++
Sbjct: 217 LMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISEL-NVVVKTSLI 275

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPN 332
           DMY K G +     VF+ +  K+  S+  +I G A +G   EA+ VF  M+EE   + P+
Sbjct: 276 DMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEE--GLTPD 333

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
              YV +L A SH G +++G +   R+  ++ +   +    C+VD+ G+ G + +A  L 
Sbjct: 334 DVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLI 393

Query: 392 YQVP-RSSSVPWNAIISCHGIH 412
             +P + + V W +++S   +H
Sbjct: 394 KSMPIKPNDVVWRSLLSACKVH 415



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI   V    L EA+   Y   L  G+ PD +T+P VLKAC  LV   +G +IH  V   
Sbjct: 102 MIRGNVNSMDLEEAL-LLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNA 160

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV   L+ MY + G    A  +F+ M  +   SW+++I  +       E L +L
Sbjct: 161 GLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLL 220

Query: 118 DEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M  EG    +   + S L  C    +   G  IH  ++++  E N+ V  +LI+MY K
Sbjct: 221 GDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVK 280

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +   L VF  M  ++  S+  +IA          A   F+ M + G+ PD +  V +
Sbjct: 281 CGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGV 340

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S  +     +        +         +     +VD+  + G++  A  + + +P+K 
Sbjct: 341 LSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKP 400

Query: 296 -DVISWNTLITG 306
            DV+ W +L++ 
Sbjct: 401 NDVV-WRSLLSA 411


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 402/717 (56%), Gaps = 25/717 (3%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC--RNLV-DGKKIHCSVLKLGFEWD 62
            RC    EA+    +     G + +   + P+L+ C  + LV D +KIH  ++K G   D
Sbjct: 49  ARCLDFREALSFIRE-----GTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKD 103

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
            F+   L+++Y + G    ARK+FD++P R+  SW  +++GY        A+ +  EM  
Sbjct: 104 AFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLE 163

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
            G      T+ + L   +   +   G  IH Y +K+ +EF+  + N+L ++Y+K G +  
Sbjct: 164 AGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLEC 223

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A++ F ++ +++V+SW ++I+A+  + +  T   FF  M    ++P+  TL S  S+   
Sbjct: 224 AVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCV 283

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
           +        +H   ++ G F  ++ I N+++ +Y K G I+ A  +F+ +    +++WN 
Sbjct: 284 MQSLDIGTQIHSLTIKLG-FESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNA 342

Query: 303 LITG------YAQNGLA-----SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           +I G      +A++ LA     +EA+ +F  +     + P+  T+ S+L   S + AL Q
Sbjct: 343 MIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSG-MKPDLFTFSSVLSVCSSLVALEQ 401

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G ++HA+ IK     DV V T LV+MY KCG I+ A   F ++   + + W ++I+ +  
Sbjct: 402 GEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQ 461

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +GQ  +AL  F  M   GVRP+ ITFV +L+ACSH+G+V E   YF MM+ E+ I P + 
Sbjct: 462 NGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMD 521

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           HY C++D+F R G L  A +FI+ M + P+  IW  L+  CR  G +ELG  A+++L  +
Sbjct: 522 HYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNL 581

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
             ++   Y L+ N+Y + GKW+ V  VR + ++  L +   WS I + +K+  F    R+
Sbjct: 582 KPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARS 641

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSF-VLQDVEEDEKEHILTS---HSERLAIAFGI 647
           H +  ++Y+ L NL  K KS GY  ++S  V  + E+ ++E  LTS   HSE+LAIAFG+
Sbjct: 642 HAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGL 701

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
           +++    PI++ K++ +C DCHN+ + IS ++ REII+RDS R H F +G CSCGD+
Sbjct: 702 LNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDF 758


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 346/567 (61%), Gaps = 16/567 (2%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE--QS 208
           +H +++  GL F+ +  + ++ + +   +  HAL +F+ +    +  +N++I++    + 
Sbjct: 28  VHAHMITTGLIFHTYPLSRILLISSTI-VFTHALSIFNHIPNPTIFLYNTLISSLANIKP 86

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME---D 265
           +  I    +   +    ++P+  T  SL          R+ R++H  +++   F+E   D
Sbjct: 87  HTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLK---FLEPTCD 143

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA-----SEAIEVF 320
             +  A+++ YAK G + +   +F  +   D+ SWN++++ Y  N  A     S ++EV 
Sbjct: 144 PFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVL 203

Query: 321 QMMEECNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378
            +  E  +  I  N+ T V+++ A + +GAL QG   H  V+K+ L  + FV T L+DMY
Sbjct: 204 TLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMY 263

Query: 379 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
            KCG +D A  LF Q+P   ++ +NA+I    IHG G +AL+ F++M  EG+ PD +T V
Sbjct: 264 SKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLV 323

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
             + +CSH GLV EG   F  M+E +G++P L+HYGC+VDL GRAG L  A   + NMP+
Sbjct: 324 VTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPM 383

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +P+A IW +LLGA R+HGN+E+G V    L +++ E  G YVL+SN+YA++ +W+ V  V
Sbjct: 384 KPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRV 443

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           R L +D G+ K PG S +EV   +  F  G++THP+ ++IY +L  ++ ++   G+ P  
Sbjct: 444 RKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRT 503

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
             VL D+EE+EKE  L+ HSERLAIAF +I+S   +PI+I KNLRVCGDCH  +K IS+I
Sbjct: 504 LEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKI 563

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
            EREIIVRD NRFHHFK+G CSC DYW
Sbjct: 564 YEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 18  FYQFTLT-SGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK-LGFEWDVFVAASLLHM 72
            Y   LT + L+P+ +TFP + KAC +   L  G+ +H  VLK L    D FV A+LL+ 
Sbjct: 94  LYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNY 153

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV--------EALDILDEMRLEG 124
           Y + G     R LF+ +   D  SWN+++S Y  +  A+        E L +  EM+   
Sbjct: 154 YAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSL 213

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           +  + +T+ +++  CA    +  G   H+Y++KH L+ N FV   LI+MY+K G +  A 
Sbjct: 214 IKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLAC 273

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV------SLTS 238
           ++FDQ+  RD + +N++I  +        A   F  M   G+ PD +TLV      S   
Sbjct: 274 QLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVG 333

Query: 239 IVAQLNDCRNS-RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-D 296
           +V +  D   S + V+G   +   +         +VD+  + G +  A      +P+K +
Sbjct: 334 LVEEGCDVFESMKEVYGVEPKLEHY-------GCLVDLLGRAGRLREAEERVLNMPMKPN 386

Query: 297 VISWNTLITGYAQNG 311
            + W +L+     +G
Sbjct: 387 AVIWRSLLGAARVHG 401


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/694 (34%), Positives = 391/694 (56%), Gaps = 36/694 (5%)

Query: 30  DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D +T+   L AC   +D   GK +H  V+  G    +F++ S+  MY R G    AR++F
Sbjct: 101 DRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVF 160

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS---- 142
           D    RD  SWNA++SGY ++G   E L++   M   G+  +   + SI+  CA S    
Sbjct: 161 DAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYA 220

Query: 143 --DNILSGLL---IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
              ++  G +   +H  +VK GL+ +LF+++ +I+MYAK G + +A+ +F  + + +V+ 
Sbjct: 221 AAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIV 280

Query: 198 WNSIIAAY---EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            N++IA +   E ++    A G ++ +Q  G+QP   +  S+        +    + +HG
Sbjct: 281 LNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHG 340

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            +++   F  DV IG+A++D+Y+  G +      F  LP +DV+ W ++I+G  QN L  
Sbjct: 341 QVLKHS-FQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFE 399

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--T 372
           EA+ +FQ    C  + P+     S++ A + +   R G +I    +K+   F+ F A   
Sbjct: 400 EALRLFQESVRCG-LRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSG--FNRFTAMGN 456

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
             + M  + G +D A   F ++     V W+A+IS H  HG    AL  F +MLD  V P
Sbjct: 457 SFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAP 516

Query: 433 -DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            + ITF+S+LTACSH GLV EG RY+ +M +E+G+ P +KH  C+VDL GRAG L  A  
Sbjct: 517 PNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEA 576

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI++     DA +W +LL +CRIHG+ME G + +D++ +++  +   YV++ N+Y + G+
Sbjct: 577 FIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGE 636

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
                + R L ++RG+KK PG S IE+++ V  F  G+++HP+ + IY ++  + +K+  
Sbjct: 637 LSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESKAIYRKVAEMVSKVAG 696

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
           +                 ++ +   HSE+LA+AFG+I  P  +PI++ KNLRVC DCH+ 
Sbjct: 697 I--------------SSREQDLAGCHSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHST 742

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + IS+   REII+RD+ RFH F+DG CSCG YW
Sbjct: 743 MELISKSERREIILRDAIRFHRFRDGSCSCGGYW 776



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 244/497 (49%), Gaps = 24/497 (4%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           +L++C  L     +H  + +      +F+   LL  YCR G+     A +L D+MP R++
Sbjct: 8   LLRSCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDEMPRRNA 67

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
            S+N +I  Y ++G    +L      R     +D  T A+ L  C+R+ ++ +G  +H  
Sbjct: 68  VSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKAVHAM 127

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           +V  GL   LF+SN++ +MYA+ G M  A RVFD   ERD VSWN++++ Y ++      
Sbjct: 128 VVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREET 187

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIV---------AQLNDCRNSRSVHGFIMRRGWFMED 265
              F+ M + G+  +   L S+               +   R + +VHG +++ G    D
Sbjct: 188 LEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAG-LDAD 246

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           + + +A++DMYAK G + +A A+F+ +P  +VI  N +I G+ +   A  A E   +  E
Sbjct: 247 LFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSE 306

Query: 326 CNE--INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
                + P++ ++ SIL A +  G    G +IH +V+K+    DV++ + L+D+Y   G 
Sbjct: 307 LQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGC 366

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++D    F  +P+   V W ++IS    +   ++AL  F++ +  G+RPD     S++ A
Sbjct: 367 MEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNA 426

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF----GRAGHLGMAHNFIQNMPVR 499
           C+   +   G++      +   +K     +  M + F     R+G +  A    Q M  R
Sbjct: 427 CASLAVARTGEQI-----QCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESR 481

Query: 500 PDASIWGALLGACRIHG 516
            D   W A++ +   HG
Sbjct: 482 -DVVSWSAVISSHAHHG 497



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            +Q ++  GLRPD +    V+ AC +L     G++I C  +K GF     +  S +HM  
Sbjct: 404 LFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCA 463

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITV 132
           R G  + A + F +M  RD  SW+A+IS +   G A +AL + +EM L+     P  IT 
Sbjct: 464 RSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEM-LDAKVAPPNEITF 522

Query: 133 ASILPVCARSDNILSGLLIH-LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR-VFDQM 190
            SIL  C+    +  GL  + +   ++GL   +     ++++  + G +  A   + D  
Sbjct: 523 LSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSA 582

Query: 191 MERDVVSWNSIIAA 204
              D V W S++A+
Sbjct: 583 FHDDAVVWRSLLAS 596


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 371/620 (59%), Gaps = 8/620 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           M+  Y++ G +  AV  F    + SG  P+F T    L  C    +L+ G ++H   +K 
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMRV-SGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKC 271

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +V VA +LL MY +    + A +LF+ +P  D  +WN MISG  Q+G   EAL + 
Sbjct: 272 GLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLF 331

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G   D +T+ S+LP     + +  G  +H YI+++ +  + F+ + L+++Y K 
Sbjct: 332 CDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKC 391

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R A  ++D     DVV  +++I+ Y  +     A   F  + +  I+P+ +T+ S+ 
Sbjct: 392 RDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVL 451

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A ++     + +HG+++R   +     + +A++DMYAK G ++ +  +F  + +KD 
Sbjct: 452 PACASISALPLGQEIHGYVLRNA-YEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE 510

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++WN++I+ ++QNG   EA+++F+ M  C E I  N  T  S L A + + A+  G +IH
Sbjct: 511 VTWNSMISSFSQNGEPQEALDLFRQM--CMEGIKYNNVTISSALSACASLPAIYYGKEIH 568

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +IK  +  D+F  + L+DMY KCG ++ A+ +F  +P  + V WN+IIS +G HG   
Sbjct: 569 GVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVK 628

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           ++++F  +M +EG +PDH+TF++L++AC+H+GLV EG + F  M +E+ I P ++H+ CM
Sbjct: 629 ESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACM 688

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL+ R+G L  A  FI +MP +PDA IWGALL ACR+H N+EL  +AS  LF++D  N 
Sbjct: 689 VDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNS 748

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVLMSNI A  G+W+GV +VR L +D  + K PG+S ++VNN   +F   +++HP+ E
Sbjct: 749 GYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESE 808

Query: 597 KIYDELRNLTAKMKSLGYVP 616
            IY  L+ L  +++  GYVP
Sbjct: 809 DIYTSLKALLQELREEGYVP 828



 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 292/522 (55%), Gaps = 12/522 (2%)

Query: 1   MISVYVRCGRLSEAVDCFY--QFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVL 55
           +I  +   G  S AV  FY   +T  +   PD +T P V+K+C  L     G+ +H +  
Sbjct: 110 LIRGFTAAGHHSLAV-LFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTAR 168

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
             G   DV+V ++L+ MY   GL   AR  FD MP RD   WN M+ GY ++G+   A+ 
Sbjct: 169 ATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVR 228

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   MR+ G   +  T+A  L VCA   ++LSG+ +H   VK GLE  + V+N L++MYA
Sbjct: 229 LFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYA 288

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K   +  A R+F+ +   D+V+WN +I+   Q+     A G F  M ++G +PD +TLVS
Sbjct: 289 KCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVS 348

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           L   +  LN  +  + VHG+I+R    M D  + +A+VD+Y K   + +A  +++     
Sbjct: 349 LLPALTDLNGLKQGKEVHGYIIRNCVHM-DAFLVSALVDIYFKCRDVRTARNLYDAARAI 407

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           DV+  +T+I+GY  NG++ +A+++F+ ++E+C  I PN  T  S+LPA + + AL  G +
Sbjct: 408 DVVIGSTVISGYVLNGMSEKALQMFRYLLEQC--IKPNAVTVASVLPACASISALPLGQE 465

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  V++N      +V + L+DMY KCGR+D +  +F ++     V WN++IS    +G+
Sbjct: 466 IHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGE 525

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             +AL+ FRQM  EG++ +++T  S L+AC+    +  G+   H +  +  IK  +    
Sbjct: 526 PQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKE-IHGVIIKGPIKADIFAES 584

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            ++D++ + G++ +A    + MP + + S W +++ A   HG
Sbjct: 585 ALIDMYAKCGNMELALRVFEFMPDKNEVS-WNSIISAYGAHG 625



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 349 LRQGIKIHAR-VIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPW 402
           L  G++IHAR V+   L     +A  T L+ MY    R  DA+++F  +PR+   SS+PW
Sbjct: 48  LPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPW 107

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           N +I      G    A+ F+ +M        PD  T   ++ +C+  G VS G R  H  
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLG-RLVHRT 166

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL----------G 510
               G+   +     ++ ++  AG L  A +    MP R D  +W  ++          G
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR-DCVLWNVMMDGYIKAGDVGG 225

Query: 511 ACRIHGNMEL 520
           A R+  NM +
Sbjct: 226 AVRLFRNMRV 235


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 337/560 (60%), Gaps = 4/560 (0%)

Query: 148 GLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           G  IH   ++ G L  + FVS   ++MY K G ++ A  +F +M  R+VV+WN+++    
Sbjct: 30  GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 89

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
               P+     +  +++AG  P++++  +  +  A           HGF+++ G+ M DV
Sbjct: 90  LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEM-DV 148

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            + N++VD Y K      A AVF+G+ V++ +SW +++  YAQNG   EA   +      
Sbjct: 149 SVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRS 208

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
            E  P      S L   + +  L  G  +HA  +++C+  ++FVA+ LVDMYGKCG ++D
Sbjct: 209 GE-EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVED 267

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACS 445
           A  +FY+ P+ + V WNA+I  +   G    AL  F  M+  G   P++IT V+++T+CS
Sbjct: 268 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCS 327

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
             GL  +G   F  M+E FGI+P  +HY C+VDL GRAG    A+  IQ MP+RP  S+W
Sbjct: 328 RGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVW 387

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
           GALLGAC++HG  ELG +A+++LFE+D ++ G +VL+SN++A+ G+W    ++R   ++ 
Sbjct: 388 GALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNV 447

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           G+KK PG S +   N V +F   +  H  Y +I   L  L  +M++ GY+PD  + L D+
Sbjct: 448 GIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDL 507

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           EE+EKE  +  HSE+LA+AFG+I  PP  PI+I KNLR+C DCH   KFIS I  REIIV
Sbjct: 508 EEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIV 567

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD+NRFHHFK   CSCGDYW
Sbjct: 568 RDNNRFHHFKQYQCSCGDYW 587



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 199/404 (49%), Gaps = 14/404 (3%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFG 77
           L  GLRP+ +TFP   KA  +       G +IH   ++ G+   D FV+ + L MY + G
Sbjct: 2   LRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTG 61

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
              +AR LF +MP R+  +WNA+++     G  +E ++    +R  G   + ++  +   
Sbjct: 62  RLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFN 121

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
            CA +  +  G   H ++VK G E ++ V N++++ Y K      A  VFD M  R+ VS
Sbjct: 122 ACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVS 181

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           W S++AAY Q+     A   +   +++G +P    + S  +  A L      R++H  + 
Sbjct: 182 WCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHA-VA 240

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
            R     ++ + +A+VDMY K G +  A  +F   P +++++WN +I GYA  G A  A+
Sbjct: 241 VRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNAL 300

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----C 373
            VF  M    E  PN  T V+++ + S  G  + G ++   + +    F +   T    C
Sbjct: 301 LVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRER---FGIEPRTEHYAC 357

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGD 416
           +VD+ G+ G  + A  +   +P   S+  W A++    +HG+ +
Sbjct: 358 VVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTE 401



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 6/308 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFV 65
           GR  E ++ ++      GL P+  +      AC     L  G++ H  V+K GFE DV V
Sbjct: 92  GRPLETIEAYFGLREAGGL-PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 150

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
             S++  Y +   A  AR +FD M VR+S SW +M++ Y Q+G   EA       R  G 
Sbjct: 151 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 210

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
                 V+S L  CA    +  G  +H   V+  ++ N+FV++ L++MY K G +  A +
Sbjct: 211 EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQ 270

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLN 244
           +F +  +R++V+WN++I  Y    D   A   F  M ++G   P+ +TLV++ +  ++  
Sbjct: 271 IFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGG 330

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTL 303
             ++   +   +  R            VVD+  + G+   A  V +G+P++  IS W  L
Sbjct: 331 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 390

Query: 304 ITGYAQNG 311
           +     +G
Sbjct: 391 LGACKMHG 398


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/687 (35%), Positives = 381/687 (55%), Gaps = 23/687 (3%)

Query: 29  PDFYTFPPVL--KACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           P  +T  P+L  +  R +      H S+L L     VF    L  + C    A++A    
Sbjct: 157 PRRFTVTPLLAFRRLRPMSTSASPHTSILHLPHRPFVFRRPRLSRLRC---FASLAPASS 213

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
              P  D    + +I   C  G   +A  +L  +     +    T  S+L   AR+ +  
Sbjct: 214 GASPAND----DHLIQMLCAHGRLAQATALLQGL----PAPTQRTYESLLLAAARARDTA 265

Query: 147 SGLLIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
               +H  +    +   + F+S  LI  YA    +  A +VFD+   +++  WN+++ A 
Sbjct: 266 LAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKAL 325

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVS-----LTSIVAQLNDCRNSRSVHGFIMRRG 260
             ++    A      M + G+  D  +        + +  + L      R +H   +RRG
Sbjct: 326 ALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRG 385

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
           + +    +   ++D YAKLGI++ A  VF  +P ++++SW+ +I  YA+N    +AI++F
Sbjct: 386 YGLH-THVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIF 444

Query: 321 Q-MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           Q MM    ++ PN  T VS+L A + V AL QG  +HA +++      V V   L+ MY 
Sbjct: 445 QEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYM 504

Query: 380 KCGRIDDAMSLFYQVPRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438
           KCG ++    +F  + R  +V  WN++IS +G+HG G ++L  F +M++EG+ P+ ITFV
Sbjct: 505 KCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFV 564

Query: 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498
           S+L ACSH GLV +G++ F  M E + + P  +HY CMVDL GRAG L  A   IQ+M +
Sbjct: 565 SVLGACSHVGLVEQGKKLFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRI 623

Query: 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558
           +P   +WG+LLGACRIHG++E   +A   LF+++  N G YVL+++IYA       VD +
Sbjct: 624 QPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVL 683

Query: 559 RSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDK 618
           + L  +  L+K PG S IEV  K+  F + +  +P+ E++   +     +MK+ GYVPD 
Sbjct: 684 KELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDT 743

Query: 619 SFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQI 678
             VL D+EE+EKE IL  HSE+LA+AFG+I +     I+I KNLR+C DCH+ TKFIS+ 
Sbjct: 744 RSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKF 803

Query: 679 TEREIIVRDSNRFHHFKDGICSCGDYW 705
           T+REI+VRD NRFHHF++G+CSC DYW
Sbjct: 804 TDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 340/572 (59%), Gaps = 47/572 (8%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTS 238
           + +A ++F  M   +  S+N++I A  +SNDP  A   F  M +   ++P+  T  S+  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 239 IVAQLNDCRNSRSVHGFIMRRGW------------------FMED--------------- 265
              +    R  R VHG  ++ G                    MED               
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 266 ------------VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
                       V++ N ++D Y ++G +  A  +F+ +P + V+SWN +I GYAQ+G  
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
            EA+EVF+ M+   E+ PN  T VS+LPA S +GAL  G  +H   ++N +  D  + + 
Sbjct: 241 KEAVEVFREMQMA-EVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSA 299

Query: 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           L+DMY KCG I+ A+ +F  +P+ + V W+ II+   +HG+    L+ F  M   GV P 
Sbjct: 300 LIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPS 359

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +T++ LL+ACSH+GLV+EG+ +F  M    G++P ++HYGCMVDL GRAG L  +   I
Sbjct: 360 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 494 QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553
            NMP++PD  IW ALLGAC++HGN+E+G   ++ L E+   + G YV +SNIYA++G WE
Sbjct: 420 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 479

Query: 554 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
           GV +VR + ++  ++K PG S IE++  +  F   + +HPK +KI+  L+ ++  +  +G
Sbjct: 480 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVG 539

Query: 614 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTK 673
           Y P+ + VL +++E++KE  L  HSE++AIAFG+IS+ P++P++I KNLR+C DCH+  K
Sbjct: 540 YRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIK 599

Query: 674 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            IS+I +R+IIVRD  RFHHF +G CSC DYW
Sbjct: 600 LISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 217/449 (48%), Gaps = 68/449 (15%)

Query: 21  FTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA- 79
           FT T+ L P    FP     C+ + D K++H  ++K     D   AA LL    RF    
Sbjct: 6   FTSTTSLWPPSSFFP-----CKTMQDLKQLHAQMIKTAQIRDPLAAAELL----RFSAVS 56

Query: 80  -----NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITV 132
                + ARK+F  M   +  S+N +I    +S +  +AL +  EM +E  S++P   T 
Sbjct: 57  DHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEM-VEDCSVEPNCFTF 115

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------- 185
            S+   C R++ +  G  +H   VK GL+ + FV +N++ MY   G+M  A R       
Sbjct: 116 PSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 175

Query: 186 ---------------------------------------VFDQMMERDVVSWNSIIAAYE 206
                                                  +FD+M +R VVSWN +IA Y 
Sbjct: 176 VDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYA 235

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           QS     A   F  MQ A + P+ +TLVS+   +++L      + VH + +R    ++DV
Sbjct: 236 QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV 295

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            +G+A++DMYAK G I  A  VFEGLP ++V++W+T+I G A +G A + ++ F+ ME  
Sbjct: 296 -LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERA 354

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRID 385
             + P+  TY+ +L A SH G + +G      +++ + L   +    C+VD+ G+ G ++
Sbjct: 355 G-VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLE 413

Query: 386 DAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           ++  L   +P +   V W A++    +HG
Sbjct: 414 ESEELILNMPIKPDDVIWKALLGACKMHG 442



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 54/386 (13%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASL 69
           +A+  F +      + P+ +TFP V KAC     L +G+++H   +K G + D FV +++
Sbjct: 94  DALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNV 153

Query: 70  LHMY----------------------------------------------CRFGLANVAR 83
           + MY                                               R G   VAR
Sbjct: 154 VRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVAR 213

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            LFD+MP R   SWN MI+GY QSG+  EA+++  EM++  V  + +T+ S+LP  +R  
Sbjct: 214 NLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLG 273

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G  +HLY V++ +  +  + + LI+MYAK G +  AL+VF+ + +R+VV+W++IIA
Sbjct: 274 ALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIA 333

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                         F  M++AG+ P  +T + L S  +        R     ++R     
Sbjct: 334 GLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLE 393

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQM 322
             +     +VD+  + G++  +  +   +P+K D + W  L+     +G       V   
Sbjct: 394 PRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRV--- 450

Query: 323 MEECNEINP-NQGTYVSILPAYSHVG 347
            E   E+ P + G+YV++   Y+ +G
Sbjct: 451 AEHLMELAPHDSGSYVALSNIYASLG 476


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/676 (36%), Positives = 371/676 (54%), Gaps = 42/676 (6%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +++ C   +++ D  KI    LK GF   +     L+  Y + G    ARK+FD++P
Sbjct: 81  YSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVP 138

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
            R   +WN+MI+ Y ++G + EA+DI   M  +G+  D  T +S+    +    +  G  
Sbjct: 139 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 198

Query: 151 IHLYIVKHGLEF-NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            H   V  G+   N+FV + L++MYAKFG MR A  V DQ++ +DVV + ++I  Y    
Sbjct: 199 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 258

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +   +   F  M + GI+ +  TL S+      L D  + R +HG I++ G         
Sbjct: 259 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAG--------- 309

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
                                   ++  ++W ++I G  QNG    A+  F+ M   + I
Sbjct: 310 ------------------------LESAVTWTSVIVGLVQNGREEIALLKFRQMLR-SSI 344

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN  T  S+L A S +  L QG +IHA V+K  L  D +V   L+D YGKCG  + A S
Sbjct: 345 TPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARS 404

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F  +     V  N++I  +  +G G +AL  F  M D G+ P+++T++ +L+AC+++GL
Sbjct: 405 VFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGL 464

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           + EG   F   +    I+    HY CMVDL GRAG L  A   I  + +  D  IW  LL
Sbjct: 465 LEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLL 523

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            ACRIHG++E+     +R+ ++  E+ G +VL+SN+YA+ G W  V E++S  R+  LKK
Sbjct: 524 SACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKK 583

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            P  S ++V  ++  F  G+ +HP +  I ++L  L  K+K LGYVPD  FVLQD++E++
Sbjct: 584 NPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEK 643

Query: 630 KEHILTSHSERLAIAFGIISSPPK-SPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           K   L  HSE+LA+AF +  S  K + I+I KNLRVCGDCH W KF+S+I  R+II RD 
Sbjct: 644 KIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDV 703

Query: 689 NRFHHFKDGICSCGDY 704
            RFHHF++G+CSCGDY
Sbjct: 704 KRFHHFRNGLCSCGDY 719



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/434 (31%), Positives = 212/434 (48%), Gaps = 44/434 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y+R GR  EA+D  YQ  +  G+ PD +TF  V KA  +L    +G++ H   + L
Sbjct: 148 MIASYIRNGRSKEAID-IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVL 206

Query: 58  GFE-WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           G    +VFV ++L+ MY +FG    AR + D +  +D   + A+I GY   G   E+L +
Sbjct: 207 GVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQV 266

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
              M  +G+  +  T++S+L  C   +++ SG LIH  IVK GLE               
Sbjct: 267 FRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLE--------------- 311

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
                              V+W S+I    Q+     A   F  M ++ I P+  TL S+
Sbjct: 312 -----------------SAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSV 354

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               + L      + +H  +M+ G  + D  +G A++D Y K G    A +VF GL   D
Sbjct: 355 LRACSSLAMLEQGKQIHAIVMKFGLDI-DKYVGAALIDFYGKCGSTEIARSVFNGLLEVD 413

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI- 355
           V+S N++I  YAQNG   EA+++F  M++   + PN  T++ +L A ++ G L +G  I 
Sbjct: 414 VVSVNSMIYSYAQNGFGHEALQLFSGMKDTG-LEPNNVTWLGVLSACNNAGLLEEGCHIF 472

Query: 356 -HARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
             AR   N  L  D +   C+VD+ G+ GR+ +A  L  QV  S  V W  ++S   IHG
Sbjct: 473 SSARNSGNIELTKDHY--ACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHG 530

Query: 414 QGDKALNFFRQMLD 427
             + A     +++D
Sbjct: 531 DVEMAKRVMNRVID 544


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 345/590 (58%), Gaps = 10/590 (1%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF-- 177
           ++++ V+ +P     ++  C     ++    I  Y +K   E ++  +  LIN   +   
Sbjct: 22  LKIDTVNPNPPNPILLISKCNSERELMQ---IQAYAIKSHQE-DVSFNTKLINFCTESPT 77

Query: 178 -GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              M +A  +FD M E D+V +NSI   Y +S +P+     F  + +  + PD  T  SL
Sbjct: 78  ESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSL 137

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               A        R +H   M+ G   ++V +   +++MY +   +++A  VF+ +    
Sbjct: 138 LKACAVAKALEEGRQLHCLSMKLG-VDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPC 196

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+ +N +ITGYA+    +EA+ +F+ M+  N + PN+ T +S+L + + +G+L  G  IH
Sbjct: 197 VVCYNAMITGYARRNRPNEALSLFREMQGKN-LKPNEITLLSVLSSCALLGSLDLGKWIH 255

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
               K+  C  V V T L+DM+ KCG +DDA+S+F  +    +  W+A+I  +  HGQ +
Sbjct: 256 EYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAE 315

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            ++  F +M  E V+PD ITF+ LL ACSH+GLV EG+ YF  M  EFGI P +KHYG M
Sbjct: 316 NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSM 375

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL GRAGHL  A+ FI  +P+ P   +W  LL AC  H N+EL    S+R+ E+D  + 
Sbjct: 376 VDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHG 435

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G YV++SN+YA   KWE VD +R + +DR   K PG SSIEVNN V  F++G+       
Sbjct: 436 GDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATT 495

Query: 597 KIYDELRNLTAKMKSLGYVPDKSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSP 655
           K++  L  +  ++K  GYVPD S V+  D+ + EKE  L  HSE+LAIAFG++++PP + 
Sbjct: 496 KLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTT 555

Query: 656 IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ KNLRVC DCH+  K IS I  R++++RD  RFHHF+DG CSC D+W
Sbjct: 556 IRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 185/351 (52%), Gaps = 10/351 (2%)

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR LFD M   D   +N++  GY +S N +E  ++  E+  + +  D  T  S+L  CA 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
           +  +  G  +H   +K G++ N++V   LINMY +   +  A  VFD+++E  VV +N++
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  Y + N P  A   F  MQ   ++P+ +TL+S+ S  A L      + +H +  + G 
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHG- 262

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F + V +  A++DM+AK G ++ A ++FE +  KD  +W+ +I  YA +G A  ++ +F+
Sbjct: 263 FCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFE 322

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT----CLVDM 377
            M   N + P++ T++ +L A SH G + +G +  + ++     F +  +      +VD+
Sbjct: 323 RMRSEN-VQPDEITFLGLLNACSHTGLVEEGREYFSWMVHE---FGIVPSIKHYGSMVDL 378

Query: 378 YGKCGRIDDAMSLFYQVPRS-SSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            G+ G ++DA     ++P S + + W  +++    H   + A     ++L+
Sbjct: 379 LGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILE 429



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 175/360 (48%), Gaps = 13/360 (3%)

Query: 5   YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEW 61
           Y R     E  + F +  L   L PD YTFP +LKAC   + L +G+++HC  +KLG + 
Sbjct: 106 YSRSTNPLEVFNLFVEI-LEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDD 164

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           +V+V  +L++MY      + AR +FD +       +NAMI+GY +     EAL +  EM+
Sbjct: 165 NVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 224

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            + +  + IT+ S+L  CA   ++  G  IH Y  KHG    + V+  LI+M+AK G + 
Sbjct: 225 GKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLD 284

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A+ +F+ M  +D  +W+++I AY        +   F  M+   +QPD +T + L +  +
Sbjct: 285 DAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACS 344

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISW 300
                   R    +++     +  +    ++VD+  + G +  A    + LP+    + W
Sbjct: 345 HTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLW 404

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH------VGALRQGIK 354
             L+   + +     A +V + + E ++   + G YV +   Y+       V +LR+ +K
Sbjct: 405 RILLAACSSHNNLELAEKVSERILELDD--SHGGDYVILSNLYARNKKWEAVDSLRKVMK 462


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/744 (33%), Positives = 398/744 (53%), Gaps = 42/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS + +  R  +A++ F++   +SG+  + ++F  +L  C  L+D   G ++H  V+K+
Sbjct: 142 MISGFAKSNRERQAMEIFFRMR-SSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKM 200

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF    FV+ +L+ +Y + G  +   +LFD+MP RD  SWN +IS   +      A ++ 
Sbjct: 201 GFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELF 260

Query: 118 DEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +MR ++G  +D  T+++IL V AR    + G  IH +++K G E N+ V N LI  Y K
Sbjct: 261 RDMRRIDGFRIDHFTLSTIL-VAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTK 319

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYE------------------------------ 206
            G ++H + +F++M  RDV++W  +I AY                               
Sbjct: 320 CGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGF 379

Query: 207 -QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+ +   A  FF  M + G++    TL  + +    L + + S+ +HGFI++ G F  +
Sbjct: 380 CQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFG-FGSN 438

Query: 266 VIIGNAVVDMYAKLGIINSA--CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
             I  A++DM  + G +  A              I W ++I GYA+N    EAI +F   
Sbjct: 439 ACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQS 498

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    +  ++    ++L     +     G +IH   +K+    D+ V   ++ MY KC  
Sbjct: 499 QLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSN 558

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +DDA+ +F  +P    V WN +I+ H +H QGD+AL+ + +M   G++PD +TFV +++A
Sbjct: 559 MDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISA 618

Query: 444 CSH--SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             H  S LV   +R F  M+  + I P ++HY  +V + G  G L  A   I  MP+ P+
Sbjct: 619 YRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPE 678

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           AS+W ALL ACRIH N  +G  A+  L  +   +   Y+L+SN+Y+  G+W   D VR  
Sbjct: 679 ASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREE 738

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            R +G +K PG S I   NKV  FY  +++HP+ + I+  L  L  +    GYVPD SFV
Sbjct: 739 MRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFV 798

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L +VEE +K+  L  HS ++A  +G++ + P  PI+I KN+ +CGDCH + K++S +T R
Sbjct: 799 LHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSIVTGR 858

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI +RD++  H F +G CSC DYW
Sbjct: 859 EIFLRDASGHHCFLNGQCSCKDYW 882



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 231/502 (46%), Gaps = 40/502 (7%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K +H S+ KL    D+ +A +L+  Y + G+   A K+F  +   +  S+ AMISG+ +S
Sbjct: 92  KAVHASIFKLA--EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKS 149

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               +A++I   MR  G+ ++  +  +IL VC R  ++  G  +H  ++K G     FVS
Sbjct: 150 NRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVS 209

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GI 226
           N L+ +Y K G +   L++FD+M  RD+ SWN++I++  +      A   F  M++  G 
Sbjct: 210 NALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGF 269

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           + D  TL ++  + A+       R +H  +++ G F  ++ + NA++  Y K G I    
Sbjct: 270 RIDHFTLSTIL-VAARGLASMVGREIHAHVIKIG-FESNISVINALIRFYTKCGSIKHVV 327

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN----------QG-- 334
           A+FE + V+DVI+W  +IT Y + GL   A+EVF  M   N I+ N          +G  
Sbjct: 328 ALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSK 387

Query: 335 ------------------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
                             T   +L A   +   +   +IH  ++K     +  +   L+D
Sbjct: 388 ALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLD 447

Query: 377 MYGKCGRIDDA--MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD 433
           M  +CGR+ DA  M       +S S+ W ++I  +  + Q ++A++ F Q   EG    D
Sbjct: 448 MCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVD 507

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +   ++L  C        G++  H    + G    L     ++ ++ +  ++  A    
Sbjct: 508 KVASTAVLGVCGTLAFHEMGKQ-IHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVF 566

Query: 494 QNMPVRPDASIWGALLGACRIH 515
             MP   D   W  L+    +H
Sbjct: 567 NVMPAH-DIVSWNGLIAGHLLH 587


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/645 (37%), Positives = 364/645 (56%), Gaps = 40/645 (6%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV+   +LL  Y + G+      +FD MP RDS S+N +I+ +  +G++ +AL +L  M+
Sbjct: 88  DVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQ 147

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            +G      +  + L  C++  ++  G  IH  IV   L  N FV N + +MYAK G + 
Sbjct: 148 EDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDID 207

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A  +FD M++++VVSWN +I+ Y +  +P      F  MQ +G++PDL+T+ +      
Sbjct: 208 KARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSN------ 261

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
                                         V++ Y + G ++ A  +F  LP KD I W 
Sbjct: 262 ------------------------------VLNAYFRCGRVDDARNLFIKLPKKDEICWT 291

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           T+I GYAQNG   +A  +F  M   N + P+  T  S++ + + + +L  G  +H +V+ 
Sbjct: 292 TMIVGYAQNGREEDAWMLFGDMLRRN-VKPDSYTISSMVSSCAKLASLYHGQVVHGKVVV 350

Query: 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421
             +   + V++ LVDMY KCG   DA  +F  +P  + + WNA+I  +  +GQ  +AL  
Sbjct: 351 MGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTL 410

Query: 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           + +M  E  +PD+ITFV +L+AC ++ +V EGQ+YF  + E  GI P L HY CM+ L G
Sbjct: 411 YERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEH-GIAPTLDHYACMITLLG 469

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           R+G +  A + IQ MP  P+  IW  LL  C   G+++   +A+  LFE+D  N G Y++
Sbjct: 470 RSGSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIM 528

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN+YA  G+W+ V  VRSL +++  KK   +S +EV NKV  F + +  HP+  KIY E
Sbjct: 529 LSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGE 588

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPK-SPIQIFK 660
           L  L + ++ +GY PD + VL +V E+EK   ++ HSE+LA+AF +I  P   +PI+I K
Sbjct: 589 LNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIK 648

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           N+RVC DCH + KF S    R II+RDSNRFHHF  G CSC D W
Sbjct: 649 NIRVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 40/349 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MIS YV+ G  +E +  F +  L SGL+PD  T   VL A                    
Sbjct: 227 MISGYVKMGNPNECIHLFNEMQL-SGLKPDLVTVSNVLNA-------------------- 265

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
                       Y R G  + AR LF  +P +D   W  MI GY Q+G   +A  +  +M
Sbjct: 266 ------------YFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDM 313

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
               V  D  T++S++  CA+  ++  G ++H  +V  G++ ++ VS+ L++MY K G+ 
Sbjct: 314 LRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVT 373

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  +F+ M  R+V++WN++I  Y Q+   + A   +  MQQ   +PD +T V + S  
Sbjct: 374 LDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSAC 433

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVIS 299
              +  +  +     I   G     +     ++ +  + G ++ A  + +G+P + +   
Sbjct: 434 INADMVKEGQKYFDSISEHG-IAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRI 492

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVG 347
           W+TL++  A+  L +  +    +     E++P N G Y+ +   Y+  G
Sbjct: 493 WSTLLSVCAKGDLKNAELAASHLF----ELDPRNAGPYIMLSNLYAACG 537


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 361/599 (60%), Gaps = 5/599 (0%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           +Y    T  ++    +F   L AC     +  GK++HC  +K+GFE D +V  SLL MY 
Sbjct: 228 YYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYG 287

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           +  +   A K+F+++P ++   WNA+IS Y  +G A +AL I  +M+L  V  D  T+ +
Sbjct: 288 KCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILN 347

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L   + +     G LIH  IVK  L+ ++ + + L+ MY+KFG   +A  +F  M ERD
Sbjct: 348 VLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERD 407

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VV+W S+I+ + Q+     A  FF  M+   ++PD   + S+ S    L       ++HG
Sbjct: 408 VVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHG 467

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           F+++ G  + DV + ++++DMY+K G    A  +F  +P+K++++WN++I+ Y +N L  
Sbjct: 468 FVIKSGLQL-DVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPD 526

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
            +I +F  +   N++ P+  ++ S+L A S V AL +G  +H  +++  + FD+ V   L
Sbjct: 527 LSINLFSQVLR-NDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTL 585

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +DMY KCG +  A  +F ++   + V WN++I  +G HG+  KA+  F +M   G++PD 
Sbjct: 586 IDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDD 645

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TF+SLL++C+HSGL+ EG   F MM+ +FGI+P ++HY  +VDL+GRAG LG A++F++
Sbjct: 646 VTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVK 705

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
           NMPV PD SIW +LL +C+IH N+ELG + +++L  ++      YV + N+Y     W+ 
Sbjct: 706 NMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDR 765

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 613
              +R+  +++GLKKTPG S IEV NKVD+FY+G+ + P   +IYD L +L   M   G
Sbjct: 766 TANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLSSLKRNMIKKG 824



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 272/537 (50%), Gaps = 27/537 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQF----------TLTSGLRPDFYTFPPVLKA--------CR 42
           +I++YV+CG  ++AV  F Q           T+ + +   ++ F  + +           
Sbjct: 94  LINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS 153

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS-GSWNAMI 101
              +GK+IH  +++    +D F+  +L+  Y + G    AR LF  +  R +  +WN MI
Sbjct: 154 GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
            G+ ++G    +L+     + E V +   +    L  C + + +  G  +H   +K G E
Sbjct: 214 GGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFE 273

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            + +V  +L+ MY K  M+  A +VF+++ ++++  WN++I+AY  +     A   +  M
Sbjct: 274 DDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQM 333

Query: 222 QQAGIQPDLLTLVSL--TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           +   +  D  T++++  +S +A L D    R +H  I++R      + I +A++ MY+K 
Sbjct: 334 KLCTVLSDSFTILNVLTSSSMAGLYDL--GRLIHTEIVKRP-LQSSITIQSALLTMYSKF 390

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G  N A ++F  +  +DV++W ++I+G+ QN    EA++ F+ M E + + P+     SI
Sbjct: 391 GDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAM-EADLVKPDSDIMASI 449

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A + +  +  G  IH  VIK+ L  DVFVA+ L+DMY K G  + A ++F  +P  + 
Sbjct: 450 ISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNL 509

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V WN+IISC+  +   D ++N F Q+L   + PD ++F S+L A S    + +G+   H 
Sbjct: 510 VAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKS-VHG 568

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                 I   L+    ++D++ + G L  A +  + +  + +   W +++G    HG
Sbjct: 569 YLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEK-NLVAWNSMIGGYGSHG 624



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 237/496 (47%), Gaps = 34/496 (6%)

Query: 32  YTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDD 88
           +T+P +LKAC    NL  GK IH S++  G   D ++ +SL+++Y + G    A K+FD 
Sbjct: 54  FTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQ 113

Query: 89  MP-----VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           +P     V D   WN++I GY + G   E +     M+  G                   
Sbjct: 114 LPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYK----------------- 156

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSII 202
               G  IH YIV++ L F+ F+   LI+ Y K G    A  +F ++ +R ++V+WN +I
Sbjct: 157 ---EGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
             + ++     +  ++   +   ++    +     S   Q       + VH   ++ G F
Sbjct: 214 GGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVG-F 272

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
            +D  +  +++ MY K  +I SA  VF  +P K++  WN LI+ Y  NG A +A+ +++ 
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQ 332

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M+ C  ++ +  T +++L + S  G    G  IH  ++K  L   + + + L+ MY K G
Sbjct: 333 MKLCTVLS-DSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFG 391

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
             + A S+F  +     V W ++IS    + +  +AL+FFR M  + V+PD     S+++
Sbjct: 392 DSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIIS 451

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502
           AC+    V  G    H    + G++  +     ++D++ + G    A N   +MP++ + 
Sbjct: 452 ACTGLEKVDLGCT-IHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLK-NL 509

Query: 503 SIWGALLGACRIHGNM 518
             W +++ +C    N+
Sbjct: 510 VAWNSII-SCYCRNNL 524



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 190/420 (45%), Gaps = 34/420 (8%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           I    Q    +EAL +  +     V     T  S+L  CA   N+  G  IH  I+  GL
Sbjct: 28  IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-----DVVSWNSIIAAYEQSNDPITAH 215
             + +++++LIN+Y K G    A++VFDQ+ +      DV  WNSII  Y +        
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  MQ +G                     +  + +H +I+R      D  +  A++D 
Sbjct: 145 VQFGRMQSSGY--------------------KEGKQIHSYIVRN-MLNFDPFLETALIDT 183

Query: 276 YAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           Y K G    A  +F+ L  + ++++WN +I G+ +NGL   ++E + ++ +   +     
Sbjct: 184 YFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYY-LLAKTENVKVVSS 242

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           ++   L A      +  G ++H   IK     D +V T L+ MYGKC  I+ A  +F +V
Sbjct: 243 SFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEV 302

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
           P      WNA+IS +  +G    AL  ++QM    V  D  T +++LT+ S +GL   G 
Sbjct: 303 PDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG- 361

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACR 513
           R  H    +  ++  +     ++ ++ + G    A++    M  R D   WG+++ G C+
Sbjct: 362 RLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKER-DVVAWGSVISGFCQ 420


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/744 (33%), Positives = 400/744 (53%), Gaps = 42/744 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS + +  R  +A++ F++   +SG+  + ++F  +L  C  L+D   G ++H  V+K+
Sbjct: 160 MISGFAKSNRERQAMEIFFRMR-SSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKM 218

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF    FV+ +L+ +Y + G  +   +LFD+MP RD  SWN +IS   +      A ++ 
Sbjct: 219 GFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELF 278

Query: 118 DEMR-LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +MR ++G  +D  T+++IL V AR    + G  IH +++K G E N+ V N LI  Y K
Sbjct: 279 RDMRRIDGFRIDHFTLSTIL-VAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTK 337

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYE------------------------------ 206
            G ++H + +F++M  RDV++W  +I AY                               
Sbjct: 338 CGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGF 397

Query: 207 -QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+ +   A  FF  M + G++    TL  + +    L + + S+ +HGFI++ G F  +
Sbjct: 398 CQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFG-FGSN 456

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDV--ISWNTLITGYAQNGLASEAIEVFQMM 323
             I  A++DM  + G +  A  +F          I W ++I GYA+N    EAI +F   
Sbjct: 457 ACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQS 516

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
           +    +  ++    ++L     +     G +IH   +K+    D+ V   ++ MY KC  
Sbjct: 517 QLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSN 576

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +DDA+ +F  +P    V WN +I+ H +H QGD+AL+ + +M   G++PD +TFV +++A
Sbjct: 577 MDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISA 636

Query: 444 CSH--SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
             H  S LV   +R F  M+  + I P ++HY  +V + G  G L  A   I  MP+ P+
Sbjct: 637 YRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPE 696

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
           AS+W ALL ACRIH N  +G  A+  L  +   +   Y+L+SN+Y+  G+W   D VR  
Sbjct: 697 ASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREE 756

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
            R +G +K PG S I   NKV  FY  +++HP+ + I+  L  L  +    GYVPD SFV
Sbjct: 757 MRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFV 816

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L +VEE +K+  L  HS ++A  +G++ + P  PI+I KN+ +CGDCH + K++S +T R
Sbjct: 817 LHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSIVTGR 876

Query: 682 EIIVRDSNRFHHFKDGICSCGDYW 705
           EI +RD++  H F +G CSC DYW
Sbjct: 877 EIFLRDASGHHCFLNGQCSCKDYW 900



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 231/502 (46%), Gaps = 40/502 (7%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQS 107
           K +H S+ KL    D+ +A +L+  Y + G+   A K+F  +   +  S+ AMISG+ +S
Sbjct: 110 KAVHASIFKLA--EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKS 167

Query: 108 GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS 167
               +A++I   MR  G+ ++  +  +IL VC R  ++  G  +H  ++K G     FVS
Sbjct: 168 NRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVS 227

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA-GI 226
           N L+ +Y K G +   L++FD+M  RD+ SWN++I++  +      A   F  M++  G 
Sbjct: 228 NALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGF 287

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           + D  TL ++  + A+       R +H  +++ G F  ++ + NA++  Y K G I    
Sbjct: 288 RIDHFTLSTIL-VAARGLASMVGREIHAHVIKIG-FESNISVINALIRFYTKCGSIKHVV 345

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN----------QG-- 334
           A+FE + V+DVI+W  +IT Y + GL   A+EVF  M   N I+ N          +G  
Sbjct: 346 ALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSK 405

Query: 335 ------------------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
                             T   +L A   +   +   +IH  ++K     +  +   L+D
Sbjct: 406 ALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLD 465

Query: 377 MYGKCGRIDDA--MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD 433
           M  +CGR+ DA  M       +S S+ W ++I  +  + Q ++A++ F Q   EG    D
Sbjct: 466 MCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVD 525

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            +   ++L  C        G++  H    + G    L     ++ ++ +  ++  A    
Sbjct: 526 KVASTAVLGVCGTLAFHEMGKQ-IHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVF 584

Query: 494 QNMPVRPDASIWGALLGACRIH 515
             MP   D   W  L+    +H
Sbjct: 585 NVMPAH-DIVSWNGLIAGHLLH 605


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 312/515 (60%), Gaps = 31/515 (6%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW----FMEDVIIG------- 269
           M+   + PD  T   +     +L+D  N +++HG   + G+    F++++I+        
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 270 -------------------NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
                              N V+   AK G I+ A   F  +P K+V SW ++I+G+ Q 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G  +EAI++F  +E+   + PN+ T VS+L A + +G L  G  +H    K+    +V V
Sbjct: 121 GKPNEAIDLFMKLED-EAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHV 179

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMY KCG +++A  +FY++   + V W+A+I+   +HGQ ++AL  F +M+  GV
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV 239

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +P+ +TF+ LL ACSH GL+ EG+R+F  M  ++G+ P ++HYGC+VDLF RAG L  AH
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAH 299

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            FI +MP++P+  +WGALLG C++H N++L   A   L E+D  N GYYV++SNIYA   
Sbjct: 300 EFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAE 359

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           +WE    VR L +DRG+KKT GWSSI VN  V  F  G++THP+ E I      L  KMK
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMK 419

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             GY P  S VL D+EE EKE  L  HSE+LA+ FG++++P  +PI+I KNLRVC DCH 
Sbjct: 420 RRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHA 479

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             K IS I  REIIVRD NRFH F+DG CSC D+W
Sbjct: 480 ALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 168/356 (47%), Gaps = 45/356 (12%)

Query: 29  PDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T   VLKAC  L   V+GK IH    KLGF  ++F+   +L++Y   G    A  L
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 86  FDDMPVRDSGSWN-------------------------------AMISGYCQSGNAVEAL 114
           F+ MP RD+ +WN                               +MISG+ Q G   EA+
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           D+  ++  E V  + +TV S+L  CA   ++  G ++H Y  K G + N+ V N LI+MY
Sbjct: 128 DLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY 187

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
            K G + +A RVF +M ER VVSW+++IA          A   F+ M + G++P+ +T +
Sbjct: 188 VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFI 247

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
            L    + +      R     +      +  +     VVD++++ G++  A      +P+
Sbjct: 248 GLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPI 307

Query: 295 K-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSH 345
           K + + W  L+ G   +    LA EAI      +  +E++P N G YV I   Y+ 
Sbjct: 308 KPNGVVWGALLGGCKVHKNIDLAEEAI------KHLSELDPLNDGYYVVISNIYAE 357



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 163/332 (49%), Gaps = 35/332 (10%)

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           MRL  V  D  T + +L  C +  ++++G  IH    K G   NLF+ N ++N+Y   G 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM------------------ 221
           M  A+ +F++M +RD V+WN +IA   +  D   A+GFF  M                  
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 222 -------------QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                        +   ++P+ +T+VS+ +  A L D    R VH +  + G F  +V +
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSG-FKRNVHV 179

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N ++DMY K G + +A  VF  +  + V+SW+ +I G A +G A EA+ +F  M +   
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG- 238

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDA 387
           + PN  T++ +L A SH+G + +G +  A +  +  +   +    C+VD++ + G +++A
Sbjct: 239 VKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEA 298

Query: 388 MSLFYQVP-RSSSVPWNAIISCHGIHGQGDKA 418
                 +P + + V W A++    +H   D A
Sbjct: 299 HEFILSMPIKPNGVVWGALLGGCKVHKNIDLA 330



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS +V+CG+ +EA+D F +      +RP+  T   VL AC +L D   G+ +H    K 
Sbjct: 113 MISGFVQCGKPNEAIDLFMKLE-DEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS 171

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V V  +L+ MY + G    AR++F +M  R   SW+AMI+G    G A EAL + 
Sbjct: 172 GFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLF 231

Query: 118 DEMRLEGVSMDPITVASILPVCA 140
            EM   GV  + +T   +L  C+
Sbjct: 232 SEMIKLGVKPNGVTFIGLLHACS 254


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/516 (40%), Positives = 319/516 (61%), Gaps = 3/516 (0%)

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M  RD+ SW S+IA Y Q++ P  A G    M +   +P+  T  SL             
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
             +H   ++  W  +DV +G+A++DMYA+ G ++ A AVF+ L  K+ +SWN LI G+A+
Sbjct: 61  EQIHALTVKYDWH-DDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
            G     + +F  M+  N       TY S+  A + +GAL QG  +HA +IK+      F
Sbjct: 120 KGDGETTLLMFAEMQR-NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 178

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   ++DMY K G + DA  +F  V +   V WN++++    +G G +A+  F +M   G
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 238

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V  + ITF+S+LTACSH GLV EG++YF MM+E   ++P + HY  +VDL GRAG L  A
Sbjct: 239 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEH-NLEPEIDHYVTVVDLLGRAGLLNDA 297

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
             FI  MP++P A++WGALLG+CR+H N ++G  A+D +FE+D ++ G  VL+ NIYA+ 
Sbjct: 298 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYAST 357

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           G+W+    VR + +  G+KK P  S +E+ N V +F   + THP+ E+IY +   ++ ++
Sbjct: 358 GQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQI 417

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
           +  GYVP+  +VL  V+E E++  L  HSE++A+AF +I+ P  + I+I KN+R+CGDCH
Sbjct: 418 RKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCH 477

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  ++IS++ EREI+VRD+NRFHHF  G CSCGDYW
Sbjct: 478 SAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 180/325 (55%), Gaps = 3/325 (0%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           M  RD  SW ++I+GY Q+    EAL +L  M       +  T AS+L     S +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
             IH   VK+    +++V + L++MYA+ G M  A+ VFDQ+  ++ VSWN++IA + + 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            D  T    F  MQ+ G +    T  S+ S +A +      + VH  +++ G  +    +
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS-AFV 179

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
           GN ++DMYAK G +  A  VF+ +  KD+++WN+++T +AQ GL  EA+  F+ M +C  
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG- 238

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           ++ NQ T++SIL A SH G +++G +    + ++ L  ++     +VD+ G+ G ++DA+
Sbjct: 239 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDAL 298

Query: 389 SLFYQVP-RSSSVPWNAIISCHGIH 412
              +++P + ++  W A++    +H
Sbjct: 299 VFIFKMPMKPTAAVWGALLGSCRMH 323



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
            +P+ +TF  +LKA         G++IH   +K  +  DV+V ++LL MY R G  ++A 
Sbjct: 37  FKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAI 96

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +FD +  ++  SWNA+I+G+ + G+    L +  EM+  G      T +S+    A   
Sbjct: 97  AVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIG 156

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G  +H +++K G   + FV N +++MYAK G M  A +VFD + ++D+V+WNS++ 
Sbjct: 157 ALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLT 216

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
           A+ Q      A   F  M++ G+  + +T +S+ +  +     +  +    F M +   +
Sbjct: 217 AFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY--FDMMKEHNL 274

Query: 264 EDVIIGN-AVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLI 304
           E  I     VVD+  + G++N A      +P+K   + W  L+
Sbjct: 275 EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 349/596 (58%), Gaps = 41/596 (6%)

Query: 150 LIHLYIVKHGLEFNLFVSNNLINM---------YAKFGMMRHALRVFDQMMERDVVSWNS 200
           +IH ++++  L  ++FV++ L+ +         +    ++ +A  +F Q+   ++  +N 
Sbjct: 30  IIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNV 89

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           +I  +    +P  A GF+T M ++ I PD +T   L     ++         H  I+R G
Sbjct: 90  LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFG 149

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
            F  DV + N++V MYA  G+I +A  +F  +P +DV+SW +++ GY + G+  +A E+F
Sbjct: 150 -FQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMF 208

Query: 321 QMM-----------------EECNE-------------INPNQGTYVSILPAYSHVGALR 350
             M                   C E             +  N+   VS++ + +H+GAL 
Sbjct: 209 DEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALE 268

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G + H  V+K+ +  ++ + T LVDMY +CG I+ A+ +F ++P   S+ W++II    
Sbjct: 269 FGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLA 328

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           +HG   KA+++F QM+  G  P  IT  ++L+ACSH GLV +G   +  M+ ++GI+P L
Sbjct: 329 VHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRL 388

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HYGC+VD+ GRAG L  A NFI  MPV+P+A I GALLGAC+I+ N E+     + L E
Sbjct: 389 EHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIE 448

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG-N 589
           V  E+ GYYVL+SNIYA  G+WE ++ +R + +++ +KK PGWS IE++ K++ F  G +
Sbjct: 449 VKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDD 508

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
           + HP+  KI      +  K++ +GY  +      DV+E+EKE  +  HSE+LAIA+G++ 
Sbjct: 509 QKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMK 568

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +   + I+I KNLRVC DCH  TK IS++  RE IVRD NRFHHF++G+CSC DYW
Sbjct: 569 TKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/544 (25%), Positives = 248/544 (45%), Gaps = 60/544 (11%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM---------YCRFGLANVARKLFD 87
           +L++C +  D K IH  +L+     DVFVA+ LL +         +    L   A  +F 
Sbjct: 18  LLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFS 77

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            +   +   +N +I  +       +A     +M    +  D IT   ++      + ++ 
Sbjct: 78  QIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVV 137

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY-- 205
           G   H  IV+ G + +++V N+L++MYA  G++  A R+F QM  RDVVSW S++A Y  
Sbjct: 138 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCK 197

Query: 206 ----EQSND-------------PITAHGF------------FTTMQQAGIQPDLLTLVSL 236
               E + +              I  +G+            F  M++ G+  +   +VS+
Sbjct: 198 CGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSV 257

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L         H ++++    + ++I+G A+VDMY + G I  A  VFE LP KD
Sbjct: 258 ISSCAHLGALEFGERAHEYVVKSHMTV-NLILGTALVDMYWRCGEIEKAIRVFEELPDKD 316

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
            +SW+++I G A +G A +AI  F  M      +P   T  ++L A SH G + +G++I+
Sbjct: 317 SLSWSSIIKGLAVHGHAHKAIHYFSQMVRLG-FSPRDITLTAVLSACSHGGLVDKGLEIY 375

Query: 357 ARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQ 414
             + ++  +   +    C+VDM G+ G++ +A +   ++P   + P   A++    I+  
Sbjct: 376 ENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKN 435

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLT---ACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
            + A      +++  V+P+H  +  LL+   AC+      E  R   +M+E+   KP   
Sbjct: 436 TEVAERVGNMLIE--VKPEHSGYYVLLSNIYACAGQWEKLESLR--DIMKEKLVKKP--- 488

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
               ++++ G+     M  +  Q  P +     +W  +LG  R+ G         D  F+
Sbjct: 489 PGWSLIEIDGKINKFSMGDD--QKHPEMGKIKRLWEEILGKIRLIG---YKGNTGDAFFD 543

Query: 531 VDSE 534
           VD E
Sbjct: 544 VDEE 547



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 39/333 (11%)

Query: 1   MISVYVRC---GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSV 54
           + +V +RC   G        FY   L S + PD  TFP ++KA   +   V G++ H  +
Sbjct: 86  VFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQI 145

Query: 55  LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           ++ GF+ DV+V  SL+HMY   GL   A ++F  MP RD  SW +M++GYC+ G   +A 
Sbjct: 146 VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAR 205

Query: 115 DILDE-------------------------------MRLEGVSMDPITVASILPVCARSD 143
           ++ DE                               M+ EGV  +   + S++  CA   
Sbjct: 206 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLG 265

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            +  G   H Y+VK  +  NL +   L++MY + G +  A+RVF+++ ++D +SW+SII 
Sbjct: 266 ALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIK 325

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
                     A  +F+ M + G  P  +TL ++ S  +          ++   M+R + +
Sbjct: 326 GLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYEN-MKRDYGI 384

Query: 264 EDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK 295
           E  +     +VDM  + G +  A      +PVK
Sbjct: 385 EPRLEHYGCIVDMLGRAGKLAEAENFILKMPVK 417


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/574 (37%), Positives = 343/574 (59%), Gaps = 6/574 (1%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMM 191
           S+L  C+  +        H  I+K GL  + F ++NL+   A   +G M +A  +F QM 
Sbjct: 36  SLLKKCSNMEEFKQS---HARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMD 92

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           E     +N+++  + +  +   A   +  M + G++PD  T  +L    A+L        
Sbjct: 93  ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQ 152

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           VH  I++ G    DV + N+++ MY K G I   CAVFE +  + V SW+ LIT +A  G
Sbjct: 153 VHAHILKLG-LENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 211

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           + S+ + +   M         +   VS+L A +H+GAL  G  +H  +++N    +V V 
Sbjct: 212 MWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE 271

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           T L++MY KCG +   M LF ++ + + + ++ +IS   +HG G + L  F +ML++G+ 
Sbjct: 272 TSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLE 331

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PD I +V +L ACSH+GLV EG + F+ M+ E GI+P ++HYGCMVDL GRAG +  A  
Sbjct: 332 PDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALE 391

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I++MP+ P+  +W +LL A ++H N++ G +A+ +LF++DS+    YV++SN+YA   +
Sbjct: 392 LIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQR 451

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           WE V + R+    +GL + PG+S +EV  K+  F + +  HP+ E +Y+ L  +  ++K 
Sbjct: 452 WEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKF 511

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY PD + VL DV+E+EK+  L+ HS++LAIA+ +I +   SPI+I +NLR+C DCH +
Sbjct: 512 EGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTY 571

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           TK IS I +REI VRD +RFHHFKDG CSC DYW
Sbjct: 572 TKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 201/381 (52%), Gaps = 7/381 (1%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDS 94
           +LK C N+ + K+ H  +LKLG   D F A++L+       +G  + A  +F  M    S
Sbjct: 37  LLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGS 96

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N M+ G+ +  N  EAL    EM   GV  D  T  ++L  CAR   +  G+ +H +
Sbjct: 97  FQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAH 156

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           I+K GLE ++FV N+LI+MY K G +     VF+QM ER V SW+++I A+         
Sbjct: 157 ILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDC 216

Query: 215 HGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
                 M   G  + +   LVS+ S    L      RSVHGF++R    + +VI+  +++
Sbjct: 217 LRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGL-NVIVETSLI 275

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           +MY K G +     +F+ +  K+ +S++ +I+G A +G   E + +F  M E   + P+ 
Sbjct: 276 EMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLE-QGLEPDD 334

Query: 334 GTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
             YV +L A SH G +++G++   R+ +++ +   +    C+VD+ G+ G+ID+A+ L  
Sbjct: 335 IVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIK 394

Query: 393 QVP-RSSSVPWNAIISCHGIH 412
            +P   + V W +++S   +H
Sbjct: 395 SMPMEPNDVLWRSLLSASKVH 415



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 157/319 (49%), Gaps = 20/319 (6%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+     G++PD +T+P +LKAC  L    +G ++H  +LKLG E DVFV  SL+ MY +
Sbjct: 119 YKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGK 178

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVAS 134
            G   V   +F+ M  R   SW+A+I+ +   G   + L +L +M  EG    +   + S
Sbjct: 179 CGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVS 238

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C     +  G  +H +++++    N+ V  +LI MY K G +   + +F +M +++
Sbjct: 239 VLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKN 298

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            +S++ +I+              FT M + G++PD +  V +      LN C ++  V  
Sbjct: 299 KLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV------LNACSHAGLVQE 352

Query: 255 FI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITG 306
            +     M+    +E  I     +VD+  + G I+ A  + + +P++  DV+ W +L++ 
Sbjct: 353 GLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVL-WRSLLSA 411

Query: 307 -YAQNGLASEAIEVFQMME 324
               N L +  I   Q+ +
Sbjct: 412 SKVHNNLQAGEIAAKQLFK 430


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/715 (34%), Positives = 381/715 (53%), Gaps = 16/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +IS YV+   L + +  F +     GL+ D YT    L AC    NL  GK IH  +L  
Sbjct: 131 LISGYVQMSNLDKVMILFDK-ARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVY 189

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    V +  SL+ MY + G  + AR LFD     D  SWN++I+GY Q+G   E L IL
Sbjct: 190 GLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTIL 249

Query: 118 DEMRLEGVSMDPITVASILPVCARSDN--ILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +M   G++ +  T+ S L  C+ + N   + G ++H + +K GL  ++ V   L++MYA
Sbjct: 250 QKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYA 309

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-----PITAHGFFTTMQQAGIQPDL 230
           K G +  A+++FDQM++++VV +N+++A   Q           A   F  M+  GI+P +
Sbjct: 310 KTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSM 369

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  SL      + D + ++ VH  + + G  + D  IG+ ++D+Y+ LG +  A   F 
Sbjct: 370 FTYSSLLKACIIVEDFKFAKQVHALMCKNG-LLSDEYIGSILIDLYSVLGSMMDALLCFN 428

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +    ++    +I GY QNG    A+ +F  +    E  P++    +I+ + +++G LR
Sbjct: 429 SIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEE-KPDEFIXSTIMSSCANMGMLR 487

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G +I     K  +          + MY K G +  A   F Q+     V W+ +I  + 
Sbjct: 488 SGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNA 547

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG   +AL FF  M   G+ P+H  F+ +L ACSH GLV EG RYF  M++++ +K H+
Sbjct: 548 QHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHV 607

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KH  C+VDL GRAG L  A + I  +    +  +W ALL ACRIH +       + ++ E
Sbjct: 608 KHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIE 667

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++      YVL+ NIY + G      +VR+L  +R +KK PG S I++ +KV  F +G+R
Sbjct: 668 LEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDR 727

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +H    +IY +L  + A  K L    D   +L    E E    +  HSE+LA+AFG++  
Sbjct: 728 SHKNSGQIYAKLDEMLATTKRLDSAKD---ILGYKIEHEHLTNVNYHSEKLAVAFGVLYL 784

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              +P+++ KNLR+C DCH   K  S + +RE+IVRDS RFHHFKDG CSCGDYW
Sbjct: 785 SESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 839



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 260/492 (52%), Gaps = 15/492 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +H  ++K  F   +F+  +LL+MYC+ G    A KLFD M   +  ++N++ISGY Q
Sbjct: 78  GKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQ 137

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
             N  + + + D+ R  G+ +D  T A  L  C++S N+ +G +IH  I+ +GL   + +
Sbjct: 138 MSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVL 197

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
           +N+LI+MY+K G + +A  +FD   + D VSWNS+IA Y Q+            M Q G+
Sbjct: 198 TNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGL 257

Query: 227 QPDLLTLVS-LTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
             +  TL S L +  +  N C+     +H   ++ G  + DV++G A++DMYAK G ++ 
Sbjct: 258 AFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHL-DVVVGTALLDMYAKTGSLDD 316

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQ-----NGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           A  +F+ +  K+V+ +N ++ G  Q     +  A +A+ +F  M+ C  I P+  TY S+
Sbjct: 317 AIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCG-IKPSMFTYSSL 375

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           L A   V   +   ++HA + KN L  D ++ + L+D+Y   G + DA+  F  +   + 
Sbjct: 376 LKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTI 435

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           VP  A+I  +  +G+ + AL+ F ++L    +PD     +++++C++ G++  G++    
Sbjct: 436 VPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSGEQ-IQG 494

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
              + GI          + ++ ++G L  A+   Q M   PD   W  ++ +   HG+  
Sbjct: 495 HATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQME-NPDIVSWSTMICSNAQHGH-- 551

Query: 520 LGAVASDRLFEV 531
             A+ + R FE+
Sbjct: 552 --AMEALRFFEL 561



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 172/327 (52%), Gaps = 13/327 (3%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           ++ +    ++    ++  +  G L+H +++K      LF+ NNL+NMY K G  R A ++
Sbjct: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKL 116

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FD+M + ++V++NS+I+ Y Q ++       F   ++ G++ D  T     +  +Q  + 
Sbjct: 117 FDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNL 176

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              + +HG I+  G     V++ N+++DMY+K G ++ A  +F+     D +SWN+LI G
Sbjct: 177 SAGKMIHGLILVYG-LGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAG 235

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH--VGALRQGIKIHARVIKNCL 364
           Y QNG   E + + Q M + N +  N  T  S L A S    G    G  +H   IK  L
Sbjct: 236 YVQNGKYEELLTILQKMHQ-NGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGL 294

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ-------GDK 417
             DV V T L+DMY K G +DDA+ +F Q+   + V +NA+++  G+  Q         K
Sbjct: 295 HLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMA--GLLQQETIEDKCAYK 352

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTAC 444
           ALN F +M   G++P   T+ SLL AC
Sbjct: 353 ALNLFFEMKSCGIKPSMFTYSSLLKAC 379


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 347/600 (57%), Gaps = 48/600 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H + +K  +  + FVS+ L+ +Y+  K   + +A  +FD++  R ++ WN+II  Y ++
Sbjct: 35  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 94

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
                    F  +    + PD  TL  +    A+L   +  + +HG  ++ G F  DV +
Sbjct: 95  QFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIG-FGSDVFV 152

Query: 269 GNAVVDMYAKLGIINSACAVFEGL------------------------------------ 292
             ++V+MY+K G I+ A  VF+G+                                    
Sbjct: 153 QGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSAL 212

Query: 293 ------PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
                 P+ D+++WN +I GY  NG   +A+++F MM +     P+  T VS+L A S +
Sbjct: 213 ELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS-RPSHATLVSVLSAVSGL 271

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             L +G  IH+ + KN    D  + T L++MY KCG I+ A+++F  + +     W AII
Sbjct: 272 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 331

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
              GIHG  + AL  F +M   G++P+ I F+ +L AC+H+GLV +G++YF MM  E+ I
Sbjct: 332 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 391

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           +P L+HYGC+VD+  RAGHL  A N I+NMP+ P+  IW +LLG  R HG +++G  A+ 
Sbjct: 392 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 451

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           R+ EV  E +G Y+L+SN+YA  G WE V  VR +   RG +K PG SS+E    +  F 
Sbjct: 452 RVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFI 511

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE-EDEKEHILTSHSERLAIAF 645
            G+ +HP+ ++IY ++  +  K+K +G+VPD + VL  +E E EKE  L +HSERLAIAF
Sbjct: 512 VGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAF 571

Query: 646 GIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           G+I+  P  PI+I KNLRVC DCH+ TK +S+I  REIIVRD+ RFHHFK+G CSC DYW
Sbjct: 572 GLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 228/505 (45%), Gaps = 63/505 (12%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV--ARKLFDDMPVRDS 94
           + + C    + +++H   LK       FV++ LL +Y    + ++  AR +FD +  R  
Sbjct: 22  LFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSL 81

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             WN +I  Y ++  + + + +  E+  E +  D  T+  ++  CAR   +  G  IH  
Sbjct: 82  IHWNTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGL 140

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII------------ 202
            +K G   ++FV  +L+NMY+K G +  A +VFD M+++DVV WNS+I            
Sbjct: 141 ALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMIN 200

Query: 203 ------------------------------AAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
                                         A YE +   + A   F  M + G +P   T
Sbjct: 201 GYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHAT 260

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
           LVS+ S V+ L      R +H ++ + G F  D I+G ++++MYAK G I SA  VF  +
Sbjct: 261 LVSVLSAVSGLAVLGKGRWIHSYMEKNG-FELDGILGTSLIEMYAKCGCIESALTVFRAI 319

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQ 351
             K V  W  +I G   +G+A+ A+ +F  +E C   + PN   ++ +L A +H G +  
Sbjct: 320 QKKKVGHWTAIIVGLGIHGMANHALALF--LEMCKTGLKPNAIIFIGVLNACNHAGLVDD 377

Query: 352 GIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVPRS-SSVPWNAIISC 408
           G + +  ++ N    +  +    CLVD+  + G +++A +    +P S + V W +++  
Sbjct: 378 G-RQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 436

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
              HG+ D      +++++  V P+ I    LL+    +  + E   +   M  + G + 
Sbjct: 437 SRNHGKIDIGEYAAQRVIE--VAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFR- 493

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFI 493
             K  GC         H G  H FI
Sbjct: 494 --KDPGC-----SSVEHKGTLHEFI 511



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 145/329 (44%), Gaps = 46/329 (13%)

Query: 29  PDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T P V+K C  L    +GK+IH   LK+GF  DVFV  SL++MY + G  + ARK+
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 172

Query: 86  FDDMPVRDS-----------GSWNAMISGYCQSGNAVEALDILDEM-------------- 120
           FD M  +D             SWNAMI+GY +SG+   AL++  +M              
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232

Query: 121 -RLEGVSMDPI----------------TVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
             L G  MD +                T+ S+L   +    +  G  IH Y+ K+G E +
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 292

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
             +  +LI MYAK G +  AL VF  + ++ V  W +II           A   F  M +
Sbjct: 293 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCK 352

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G++P+ +  + + +         + R     +M        +     +VD+  + G + 
Sbjct: 353 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLE 412

Query: 284 SACAVFEGLPVK-DVISWNTLITGYAQNG 311
            A    E +P+  + + W +L+ G   +G
Sbjct: 413 EAKNTIENMPISPNKVIWMSLLGGSRNHG 441


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/577 (39%), Positives = 340/577 (58%), Gaps = 8/577 (1%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF--GMMRHALRVFDQMM 191
           +IL V    +N+     I  +++ +GL+ +  +SN+++N  A    G + +A  +F  ++
Sbjct: 11  AILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHIL 70

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSR 250
                +WNSII  + QS  P+ A  ++  M    +  PD  T         ++   +   
Sbjct: 71  NPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCE 130

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VHG I+R G +  DV++   +V  Y + G +  A  VF+ +P +D+++WN +I+ Y+Q 
Sbjct: 131 EVHGSIIRTG-YERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQA 189

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EA+ V+  M   N +  +  T V +L + SHVGAL  G+K+H    +  L  +VFV
Sbjct: 190 GYHQEALRVYDYMRNEN-VGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFV 248

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
              L+DMY KCG +D A+ +F  +PR +   WN++I   G+HG GD+A+ FF QML+ GV
Sbjct: 249 GNALIDMYAKCGSLDGALEVFNGMPRDA-FTWNSMIVGFGVHGFGDEAIYFFNQMLEAGV 307

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           RP+ I F+ LL  CSH GLV EG  +FH M  +F +KP +KHYGC+VD++GRAG L  A 
Sbjct: 308 RPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKAL 367

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
             I + P + D  +W  LL + +IH N+ +G +A   L ++ + N G  VL++ IYA   
Sbjct: 368 EIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGAN 427

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
             +GV  +R L + +G+K TPGWS IEV+++V  F   +++HP  E IY +L  +T K  
Sbjct: 428 DEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKAT 487

Query: 611 SLGYVPDKS-FVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
             GYV DKS F+      E+  E   T HSE+LAIAFG+  +P  + ++I KNLRVC DC
Sbjct: 488 MAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDC 547

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H +TKF+S+   R+IIVRD  RFHHFK G+CSC DYW
Sbjct: 548 HEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 193/382 (50%), Gaps = 10/382 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN---VARKLFDDMPVRD 93
           VL+ C NL   KKI   V+  G +    ++ S+L+ +C   ++     A+ LF  +    
Sbjct: 15  VLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILN-FCAVSISGSLPYAQHLFRHILNPQ 73

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIH 152
           + +WN++I G+ QS + V+A+   + M  + VS  D  T +  L  C R   +     +H
Sbjct: 74  TQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVH 133

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
             I++ G E ++ V   L+  Y + G +  A  VFD M ERD+V+WN++I+ Y Q+    
Sbjct: 134 GSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQ 193

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   +  M+   +  D  TLV L S  + +        +H     +G  + +V +GNA+
Sbjct: 194 EALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKG-LLRNVFVGNAL 252

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DMYAK G ++ A  VF G+P +D  +WN++I G+  +G   EAI  F  M E   + PN
Sbjct: 253 IDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAG-VRPN 310

Query: 333 QGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
              ++ +L   SH G + +G++  H    K  +   +    C+VDMYG+ G+++ A+ + 
Sbjct: 311 SIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEII 370

Query: 392 YQVP-RSSSVPWNAIISCHGIH 412
              P +   V W  ++S   IH
Sbjct: 371 GDSPWQDDPVLWRILLSSSKIH 392



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 141/281 (50%), Gaps = 5/281 (1%)

Query: 29  PDFYTFPPVLKACRNLVDGKK---IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +TF   LKAC  +   KK   +H S+++ G+E DV V   L+  Y R G   +AR +
Sbjct: 108 PDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMV 167

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD+MP RD  +WNAMIS Y Q+G   EAL + D MR E V +D  T+  +L  C+    +
Sbjct: 168 FDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGAL 227

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G+ +H    + GL  N+FV N LI+MYAK G +  AL VF+  M RD  +WNS+I  +
Sbjct: 228 NMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNG-MPRDAFTWNSMIVGF 286

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
                   A  FF  M +AG++P+ +  + L    +              +  +      
Sbjct: 287 GVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPG 346

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLIT 305
           +     +VDMY + G +  A  +    P + D + W  L++
Sbjct: 347 IKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLS 387


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 336/556 (60%), Gaps = 3/556 (0%)

Query: 152 HLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           H  I+K GL  + F ++NL+   A   +G M +A  +F QM E     +N+++  + +  
Sbjct: 8   HARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDM 67

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +   A   +  M + G++PD  T  +L    A+L        VH  I++ G    DV + 
Sbjct: 68  NTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLG-LENDVFVQ 126

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
           N+++ MY K G I   CAVFE +  + V SW+ LIT +A  G+ S+ + +   M      
Sbjct: 127 NSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYW 186

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
              +   VS+L A +H+GAL  G  +H  +++N    +V V T L++MY KCG +   M 
Sbjct: 187 RAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMC 246

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           LF ++ + + + ++ +IS   +HG G + L  F +ML++G+ PD I +V +L ACSH+GL
Sbjct: 247 LFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGL 306

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V EG + F+ M+ E GI+P ++HYGCMVDL GRAG +  A   I++MP+ P+  +W +LL
Sbjct: 307 VQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLL 366

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
            A ++H N++ G +A+ +LF++DS+    YV++SN+YA   +WE V   R+    +GL +
Sbjct: 367 SASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQ 426

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            PG+S +EV  K+  F + +  HP+ E +Y+ L  +  ++K  GY PD + VL DV+E+E
Sbjct: 427 RPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEE 486

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K+  L+ HS++LAIA+ +I +   SP++I +NLR+C DCH +TK IS I +REI VRD +
Sbjct: 487 KKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRH 546

Query: 690 RFHHFKDGICSCGDYW 705
           RFHHFKDG CSC DYW
Sbjct: 547 RFHHFKDGACSCRDYW 562



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 193/370 (52%), Gaps = 7/370 (1%)

Query: 48  KKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           K+ H  +LK G   D F A++L+       +G  + A  +F  M    S  +N M+ G+ 
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           +  N  EAL    EM   GV  D  T  ++L  CAR   +  G+ +H +I+K GLE ++F
Sbjct: 65  KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 124

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V N+LI+MY K G +     VF+QM ER V SW+++I A+               M   G
Sbjct: 125 VQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEG 184

Query: 226 I-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
             + +   LVS+ S    L      RSVHGF++R    + +VI+  ++++MY K G +  
Sbjct: 185 YWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGL-NVIVETSLIEMYLKCGXLYK 243

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
              +F+ +  K+ +S++ +I+G A +G   E + +F  M E   + P+   YV +L A S
Sbjct: 244 GMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLE-QGLEPDDIVYVGVLNACS 302

Query: 345 HVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPW 402
           H G +++G++   R+ +++ +   +    C+VD+ G+ G+ID+A+ L   +P   + V W
Sbjct: 303 HAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLW 362

Query: 403 NAIISCHGIH 412
            +++S   +H
Sbjct: 363 RSLLSASKVH 372



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 157/319 (49%), Gaps = 20/319 (6%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+     G++PD +T+P +LKAC  L    +G ++H  +LKLG E DVFV  SL+ MY +
Sbjct: 76  YKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGK 135

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVAS 134
            G   V   +F+ M  R   SW+A+I+ +   G   + L +L +M  EG    +   + S
Sbjct: 136 CGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVS 195

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L  C     +  G  +H +++++    N+ V  +LI MY K G +   + +F +M +++
Sbjct: 196 VLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKN 255

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            +S++ +I+              FT M + G++PD +  V +      LN C ++  V  
Sbjct: 256 KLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV------LNACSHAGLVQE 309

Query: 255 FI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITG 306
            +     M+    +E  I     +VD+  + G I+ A  + + +P++  DV+ W +L++ 
Sbjct: 310 GLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVL-WRSLLSA 368

Query: 307 -YAQNGLASEAIEVFQMME 324
               N L +  I   Q+ +
Sbjct: 369 SKVHNNLQAGEIAAKQLFK 387


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/617 (37%), Positives = 353/617 (57%), Gaps = 38/617 (6%)

Query: 85  LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARS 142
           + D  P R +  +N ++ G   +    +AL +   MR +G +  P   T    L  CA +
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
           D ++ G  IH    + GL+ N+FV+++ I+MYA+ G    A ++F++M  RDVVSWN++I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 203 AAYEQSNDPITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           + +  +     A   F  +      +PD  T+ S+                         
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS---------------------- 233

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
                 +G A V+  A L        VF+ +  K +ISWN ++  Y  N +  EA+E+F 
Sbjct: 234 ------MGKARVEDIALLK------GVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFM 281

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M++ + I P+  T  ++LP+   V AL  G +IH  + +  +C  + +   L+DMY  C
Sbjct: 282 RMQK-DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC 340

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G + +A  +F  +     V W +IIS +G HG G +A++ F +M  +G+ PD I FV++L
Sbjct: 341 GCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAIL 400

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
            ACSH+GL+  G+ YF+ M  EF I P L+HY CMVDL GRAG +  A++FI  MP++P+
Sbjct: 401 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 460

Query: 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561
             +WGALLGACRIH NM++G +A+D L  +  +  GYYVL+SNIYA  G+W  V  VRS+
Sbjct: 461 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSV 520

Query: 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV 621
              +G+KK PG S+ E+ ++V  F+ G+ +HP+ + IY +L  L  +++ +GY P+    
Sbjct: 521 MESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEAT 580

Query: 622 LQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITER 681
           L DVEE++KE  L+ HSE+LAIAF +I++ P +PI+I  NLR C DCH+  K IS I  R
Sbjct: 581 LHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGR 640

Query: 682 EIIVRDSNRFHHFKDGI 698
           EII++D NR H+ K  I
Sbjct: 641 EIILKDVNRIHYMKCNI 657



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 51/402 (12%)

Query: 29  PDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD YT+P  LK+C     LV G++IH S  +LG + +VFVA S + MY R G  + A ++
Sbjct: 120 PDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 179

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM-RLEGVSMDPITVASILPVC--ARS 142
           F++M  RD  SWNAMISG+  +G    A+D+  E+  L+    D  T+ASILP    AR 
Sbjct: 180 FEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARV 239

Query: 143 DNI--LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           ++I  L G                                     VFD+M  + ++SWN+
Sbjct: 240 EDIALLKG-------------------------------------VFDEMRFKGLISWNA 262

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260
           ++A Y  +   + A   F  MQ+ GI+PD +TL ++     +++     + +H  I RR 
Sbjct: 263 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 322

Query: 261 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320
                +++ NA++DMYA  G +  A  VF+ +  +DV+SW ++I+ Y ++G   EAI++F
Sbjct: 323 -MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLF 381

Query: 321 QMMEECNE-INPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCLVDMY 378
           + M  C + + P+   +V+IL A SH G L  G    ++   +  +   +    C+VD+ 
Sbjct: 382 EKM--CGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 439

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKAL 419
           G+ G I +A      +P + +   W A++    IH   D  L
Sbjct: 440 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 481



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 21/248 (8%)

Query: 2   ISVYVRCGRLSEAVDCFYQF---------TLTSGLRPDFYTFPPVLKACRNLVDGKKIHC 52
           IS+Y RCGR  +A   F +           + SG       F   +   R LV    + C
Sbjct: 164 ISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGF-AHAGLFGRAMDVFRELV---ALQC 219

Query: 53  SVLKLGFEWDVFVAASLLHMYCRFGLANVA--RKLFDDMPVRDSGSWNAMISGYCQSGNA 110
                  + D    AS+L    +  + ++A  + +FD+M  +   SWNAM++ Y  +   
Sbjct: 220 P------KPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMH 273

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           VEA+++   M+ +G+  D +T+A++LP C     +  G  IH  I +  +  ++ + N L
Sbjct: 274 VEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENAL 333

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MYA  G ++ A  VFD M  RDVVSW SII+AY +      A   F  M   G++PD 
Sbjct: 334 MDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDS 393

Query: 231 LTLVSLTS 238
           +  V++ +
Sbjct: 394 IAFVAILA 401



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 18/356 (5%)

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
           LL LV      A L   R + +   F++R         +   ++  YA    + +A AV 
Sbjct: 18  LLRLVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVL 77

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGA 348
           +  P +  + +N L+ G     L  +A+ +F  M  + +   P+  TY   L + +    
Sbjct: 78  DASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDG 137

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           L  G +IH+   +  L  +VFVA   + MY +CGR DDA  +F ++     V WNA+IS 
Sbjct: 138 LVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISG 197

Query: 409 HGIHGQGDKALNFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
               G   +A++ FR+++  +  +PD  T  S+L +   + +  E       + +E   K
Sbjct: 198 FAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARV--EDIALLKGVFDEMRFK 255

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNF--IQNMPVRPDASIWGALLGACRIHGNMELGAVAS 525
             +     +        H+     F  +Q   + PDA     +L +C     + LG    
Sbjct: 256 GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG---- 311

Query: 526 DRLFEV-DSENVGYYVLMSN----IYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            R+ EV     +   +L+ N    +YAN G    + E R +    G +    W+SI
Sbjct: 312 KRIHEVIKRRRMCSSMLLENALMDMYANCG---CLKEARDVFDSMGTRDVVSWTSI 364


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 322/527 (61%), Gaps = 7/527 (1%)

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ----AGIQPDLLTLVSLTS 238
           A  +FD+M  RD  SW++I++A+ +   P  A   +  M +    AG+  +     +L +
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAA 171

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A        R +H  ++RRG    D ++ +A+ DMYAK G ++ A +VF+ +PV+DV+
Sbjct: 172 ATAARCAR-AGRELHCHVVRRG-IDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVV 229

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SW  ++  Y       E   +F  M     I PN+ TY  +L A +   + + G ++H R
Sbjct: 230 SWTAMVERYFDARRDGEGFRLFVRMLRSG-IQPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
           + K+      F  + LV MY K G +  A+ +F  +P+   V W A+IS +  +GQ D+A
Sbjct: 289 MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEA 348

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L +F  +L  G RPDH+TFV +L+AC+H+GLV +G   FH +++E+GI+    HY C++D
Sbjct: 349 LRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVID 408

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           L  R+G    A   I  M V+P+  +W +LLG CRIH N+ L   A++ LFE++ EN   
Sbjct: 409 LLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPAT 468

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YV ++NIYA+VG ++ V+  R +   +G+ K P  S IEV  ++ +F  G++ HP+ E++
Sbjct: 469 YVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQV 528

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y  L+ L  KM+  GYV D  FVL DVE+++K+  +  HSERLA+AFGII++P  +PI++
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKV 588

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           FKNLR+CGDCH   K IS+I +REIIVRDSNRFHHFK+G CSC DYW
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 191/390 (48%), Gaps = 9/390 (2%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM---DPITVA 133
           GLA+ AR LFD MP RD  SW+A++S + + G    AL I   M  E  S    +  T +
Sbjct: 108 GLAS-ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTAS 166

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
           S L     +    +G  +H ++V+ G++ +  V + L +MYAK G +  A  VFD+M  R
Sbjct: 167 SALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVR 226

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253
           DVVSW +++  Y  +         F  M ++GIQP+  T   +    A+    +  + VH
Sbjct: 227 DVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVH 286

Query: 254 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           G  M +    +     +A+V MY+K G + +A  VF G+P  D++SW  +I+GYAQNG  
Sbjct: 287 GR-MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQP 345

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLCFDVFVAT 372
            EA+  F M+       P+  T+V +L A +H G + +G+ I H+   +  +        
Sbjct: 346 DEALRYFDMLLRSG-CRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYA 404

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           C++D+  + G  + A  +   +  + +   W +++    IH +  +   +  + L E   
Sbjct: 405 CVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIH-KNVRLARWAAEALFEIEP 463

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
            +  T+V+L    +  GL  E +    +M+
Sbjct: 464 ENPATYVTLANIYASVGLFDEVENTRRIME 493



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 145/306 (47%), Gaps = 11/306 (3%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           G+++HC V++ G + D  V ++L  MY + G  + AR +FD MPVRD  SW AM+  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           +    E   +   M   G+  +  T A +L  CA   +   G  +H  + K     + F 
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFA 300

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            + L++MY+K+G M  A+RVF  M + D+VSW ++I+ Y Q+  P  A  +F  + ++G 
Sbjct: 301 ESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGC 360

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           +PD +T V + S  A         S+   I               V+D+ ++ G+   A 
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 287 AVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILP 341
            +   + VK +   W +L+ G   +    LA  A E         EI P N  TYV++  
Sbjct: 421 EMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEAL------FEIEPENPATYVTLAN 474

Query: 342 AYSHVG 347
            Y+ VG
Sbjct: 475 IYASVG 480


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/660 (35%), Positives = 359/660 (54%), Gaps = 73/660 (11%)

Query: 29  PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           P+   F  +L +C   R+    + +H  +L   F  ++F+   L+ +Y +    + ARKL
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 86  FDDMPVR-------------------------------DSGSWNAMISGYCQSGNAVEAL 114
           FD MP R                               D  SWN+M+SG+ Q     E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174
           +   +M  E   ++  +  S L  CA   ++  G  +H  + K     ++++ + LI+MY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 175 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234
           +K G +  A  VF  M+ER++V+WNS+I  YEQ+     A   F  M  +G++PD +TL 
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           S+ S  A L   +    +H  +++   F +D+++GNA+VDMYAK   +N A  VF+ + +
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 295 KDVIS-------------------------------WNTLITGYAQNGLASEAIEVFQMM 323
           ++V+S                               WN LI GY QNG   EA+ +F+++
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF------DVFVATCLVDM 377
           +    I P   T+ ++L A +++  L  G + H  V+K    F      D+FV   L+DM
Sbjct: 373 KR-ESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDM 431

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG I+D   +F ++     V WNAII  +  +G G +AL  FR+ML  G +PDH+T 
Sbjct: 432 YMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTM 491

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           + +L ACSH+GLV EG+ YF  M EE G+ P   HY CMVDL GRAG L  A N I+ MP
Sbjct: 492 IGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 550

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           V PDA +WG+LL AC++HGN+E+G  A+++L E+D  N G YVL+SN+YA +G+W  V  
Sbjct: 551 VNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVR 610

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           VR L R +G+ K PG S IEV ++V +F   +++HP  ++IY  L+ LT +MK +GY+PD
Sbjct: 611 VRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPD 670



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 234/458 (51%), Gaps = 51/458 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDF----YTFPPVLKACRNLVD---GKKIHCS 53
           M+S + +  R  E+++ F +       R DF    Y+F   L AC  L+D   G ++H  
Sbjct: 118 MVSGFAQHDRFEESLEYFVKMH-----REDFLLNEYSFGSALSACAGLMDLNMGTQVHAL 172

Query: 54  VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 113
           V K  +  DV++ ++L+ MY + G    A ++F  M  R+  +WN++I+ Y Q+G A EA
Sbjct: 173 VSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEA 232

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLIN 172
           L++   M   G+  D +T+AS++  CA    +  GL IH  +VK +    +L + N L++
Sbjct: 233 LEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVD 292

Query: 173 MYAKFGMMRHALRVFD-------------------------------QMMERDVVSWNSI 201
           MYAK   +  A RVFD                               +M +R+VVSWN++
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNAL 352

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           IA Y Q+ +   A   F  +++  I P   T  +L S  A L D    R  H  ++++G+
Sbjct: 353 IAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGF 412

Query: 262 FME-----DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
             +     D+ +GN+++DMY K G I     VFE +  +D +SWN +I GYAQNG  +EA
Sbjct: 413 EFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEA 472

Query: 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376
           +++F+ M  C E  P+  T + +L A SH G + +G      + ++ L       TC+VD
Sbjct: 473 LQIFRKMLVCGE-KPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVD 531

Query: 377 MYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           + G+ G +++A +L   +P    +V W ++++   +HG
Sbjct: 532 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/613 (37%), Positives = 347/613 (56%), Gaps = 45/613 (7%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
           ++ S L   AR   +L+  L H  I+K GL  +  + N L+N Y K G+++ AL++FD +
Sbjct: 6   SLQSQLCSAARQSPLLAKKL-HAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL 64

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN--DCRN 248
             RD V+W S++ A   SN P  A     ++   G  PD     SL    A L     + 
Sbjct: 65  PRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQ 124

Query: 249 SRSVHG-FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            + VH  F +    F +D ++ ++++DMYAK G+ +   AVF+ +   + ISW T+I+GY
Sbjct: 125 GKQVHARFFLSP--FSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGY 182

Query: 308 AQNGLASEAIEVFQ----------------MMEECNEINP--------NQGTYV------ 337
           A++G   EA  +F+                +++  N ++         ++G  V      
Sbjct: 183 ARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVL 242

Query: 338 -SILPAYSHVGALRQGIKIHARVI----KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            S++ A +++     G ++H  VI    ++CL    F++  L+DMY KC  +  A  +F 
Sbjct: 243 SSVVGACANLALWELGKQMHGVVITLGYESCL----FISNALIDMYAKCSDLVAAKYIFC 298

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
           ++ R   V W +II     HGQ ++AL  + +M+  GV+P+ +TFV L+ ACSH+GLVS+
Sbjct: 299 EMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSK 358

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G+  F  M E+ GI P L+HY C++DLF R+GHL  A N I+ MPV PD   W ALL +C
Sbjct: 359 GRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSC 418

Query: 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPG 572
           + HGN ++    +D L  +  E+   Y+L+SNIYA  G WE V +VR L      KK PG
Sbjct: 419 KRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPG 478

Query: 573 WSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEH 632
           +S I++     +FY G  +HP  ++I   +R L  +M+  GY PD S VL D+++ EKE 
Sbjct: 479 YSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKER 538

Query: 633 ILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFH 692
            L  HSERLA+A+G++ + P + I+I KNLRVCGDCH   K IS IT REI VRD+ R+H
Sbjct: 539 QLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYH 598

Query: 693 HFKDGICSCGDYW 705
           HFKDG CSC D+W
Sbjct: 599 HFKDGNCSCNDFW 611



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 203/432 (46%), Gaps = 40/432 (9%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            KK+H  ++K G      +  +LL+ Y + GL   A +LFD +P RD  +W ++++    
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD--NILSGLLIHLYIVKHGLEFNL 164
           S     AL I   +   G   D    AS++  CA     ++  G  +H          + 
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE------------------ 206
            V ++LI+MYAKFG+  +   VFD +   + +SW ++I+ Y                   
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 207 -------------QSNDPITAHGFFTTMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSV 252
                        QS + + A   F  M+  GI   D L L S+    A L      + +
Sbjct: 202 NLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQM 261

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           HG ++  G +   + I NA++DMYAK   + +A  +F  +  KDV+SW ++I G AQ+G 
Sbjct: 262 HGVVITLG-YESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQ 320

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVA 371
           A EA+ ++  M     + PN+ T+V ++ A SH G + +G  +   ++++  +   +   
Sbjct: 321 AEEALALYDEMVLAG-VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHY 379

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           TCL+D++ + G +D+A +L   +P +   P W A++S    HG    A+     +L+  +
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLN--L 437

Query: 431 RPDHITFVSLLT 442
           +P+  +   LL+
Sbjct: 438 KPEDPSSYILLS 449



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 40/363 (11%)

Query: 23  LTSGLRPDFYTFPPVLKACRNL-----VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           L++G  PD + F  ++KAC NL       GK++H       F  D  V +SL+ MY +FG
Sbjct: 96  LSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFG 155

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYC-------------------------------Q 106
           L +  R +FD +   +S SW  MISGY                                Q
Sbjct: 156 LPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQ 215

Query: 107 SGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           SGN V+A  +  EMR EG+S+ DP+ ++S++  CA       G  +H  ++  G E  LF
Sbjct: 216 SGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLF 275

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           +SN LI+MYAK   +  A  +F +M  +DVVSW SII    Q      A   +  M  AG
Sbjct: 276 ISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAG 335

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+ +T V L    +        R++   ++        +     ++D++++ G ++ A
Sbjct: 336 VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEA 395

Query: 286 CAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
             +   +PV  D  +W  L++   ++G    A+ +   +      +P+  +Y+ +   Y+
Sbjct: 396 ENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPS--SYILLSNIYA 453

Query: 345 HVG 347
             G
Sbjct: 454 GAG 456



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS  V+ G   +A   F +         D      V+ AC NL     GK++H  V+ L
Sbjct: 209 LISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITL 268

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E  +F++ +L+ MY +      A+ +F +M  +D  SW ++I G  Q G A EAL + 
Sbjct: 269 GYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALY 328

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           DEM L GV  + +T   ++  C+ +  +  G  L    +  HG+  +L     L++++++
Sbjct: 329 DEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSR 388

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  +   M +  D  +W +++++
Sbjct: 389 SGHLDEAENLIRTMPVNPDEPTWAALLSS 417


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 360/610 (59%), Gaps = 3/610 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI  Y R G    A    Y      G++P   T   +L     LV  + +H  V++ GF 
Sbjct: 120 MIGCYTRAGEHDVAFS-MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFG 178

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV +A S+L++YC+ G    A+ LF+ M  RD  SWN+++SGY Q GN  E L +L  M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + +G+  D  T  S++   A    +  G ++H +I++ GLE +  +  +LI MY K G +
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A R+F+ MM +DV+SW ++I+   Q++    A   F  M ++ + P   T+ S+ +  
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A+L       SVHG+I+R+   + D+   N++V MYAK G +  +C+VF+ +  +D++SW
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKL-DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSW 417

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +++G+AQNG   +A+ +F  M +  +  P+  T VS+L A + +GAL QG  IH  V 
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K+CL   + + T LVDMY KCG +  A   F ++P+   V W++II+ +G HG+G+ AL 
Sbjct: 477 KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALR 536

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            +   L  G++P+H+ ++S+L+ACSH+GLV +G  +FH M ++FGI+P L+H  C+VDL 
Sbjct: 537 MYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLL 596

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            RAG +  A++F + M  +P   + G LL ACR  GN+ELG + +  +  +   N G YV
Sbjct: 597 SRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYV 656

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            +++ YA++ +W+GV EV +  +   LKK PGWS IE++  +  F+T + +HP++E+I D
Sbjct: 657 QLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIID 716

Query: 601 ELRNLTAKMK 610
            +  L  + +
Sbjct: 717 RVLLLNKRRR 726



 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/562 (31%), Positives = 288/562 (51%), Gaps = 26/562 (4%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y   L++   PD +TFP ++KAC +L     G   H  V+  G+  D ++A SL++ Y +
Sbjct: 36  YSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSK 95

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
           FG    ARK+FD M  R+   W  MI  Y ++G    A  + + MR +G+    +T+   
Sbjct: 96  FGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTML-- 153

Query: 136 LPVCARSDNILSGLL-------IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
                    +LSG+L       +H  ++++G   ++ ++N+++N+Y K G +  A  +F+
Sbjct: 154 --------GLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFE 205

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  RDV+SWNS+++ Y Q  +          M+  GI+PD  T  SL S  A  +    
Sbjct: 206 LMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGV 265

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + VHG I+R G   +D  I  +++ MY K G +NSA  +FEG+  KDVISW  +I+G  
Sbjct: 266 GKMVHGHILRAG-LEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           QN  A  A+ VF+ M + + + P+  T  S+L A + +G+   G  +H  +++  +  D+
Sbjct: 325 QNDCADMAVTVFRRMLK-SRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDI 383

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
                LV MY KCG ++ + S+F ++ R   V WNAI+S H  +G   KAL  F +M   
Sbjct: 384 PSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKA 443

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
             RPD IT VSLL AC+  G + +G ++ H    +  + P +     +VD++ + G LG 
Sbjct: 444 RQRPDSITVVSLLQACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGS 502

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELG-AVASDRLFE-VDSENVGYYVLMSNIY 546
           A      MP + D   W +++     HG  E    + SD L   +   +V Y  ++S   
Sbjct: 503 AQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561

Query: 547 ANVGKWEGVDEVRSLARDRGLK 568
            N    +G+    S+ +D G++
Sbjct: 562 HNGLVDQGLSFFHSMTKDFGIE 583



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 219/426 (51%), Gaps = 9/426 (2%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
           + S+NA+I+    +G   + L     M       D  T  S++  C   D    GL  H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            ++  G   + +++ +LIN Y+KFG  + A +VFD M +R+VV W ++I  Y ++ +   
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDV 132

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   +  M++ GIQP  +T++ L S V +L    + + +H  +++ G F  DV + N+++
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLEL---VHLQCLHACVIQYG-FGSDVALANSML 188

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           ++Y K G +  A A+FE +  +DVISWN+L++GYAQ G   E +++   M+  + I P+Q
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKT-DGIEPDQ 247

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393
            T+ S++ A +    L  G  +H  +++  L  D  + T L+ MY KCG ++ A  +F  
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG 307

Query: 394 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453
           +     + W A+IS    +   D A+  FR+ML   V P   T  S+L AC+  G    G
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367

Query: 454 QR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
              + +++++   IK  +     +V ++ + GHL  + +    M  R D   W A++   
Sbjct: 368 TSVHGYILRQR--IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGH 424

Query: 513 RIHGNM 518
             +G++
Sbjct: 425 AQNGHL 430


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/596 (36%), Positives = 364/596 (61%), Gaps = 5/596 (0%)

Query: 112 EALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           +AL++ +   LE G  +   T  +++  C    +I     +  Y+V +G E + ++ N +
Sbjct: 114 DALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRV 173

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           + M+ K GMM  A R+FD+M  R+ VSW +II+ Y  S + + A   F  M++       
Sbjct: 174 LLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGP 233

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  ++    A L      R +H   ++ G   +D+ +  A++DMY+K G +  A  VF+
Sbjct: 234 RTFATMIRASAGLEIIFPGRQLHSCAIKAG-LGQDIFVSCALIDMYSKCGSLEDAHCVFD 292

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P K ++ WN++I GYA +G + EA++++  M +   +  +  T+  I+   S + ++ 
Sbjct: 293 EMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSG-VKMDHFTFSIIIRICSRLASVA 351

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +  ++HA +++N    DV   T LVD Y K G++DDA  +F ++   + + WNA+I+ +G
Sbjct: 352 RAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYG 411

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG G++A++ F +ML EG+ P+H+TF+++L+ACS SGL   G   F  M  +  +KP  
Sbjct: 412 NHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRA 471

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            H+ CM++L GR G L  A+  I+  P +P A++W ALL ACR+HGN+ELG  A+++L+ 
Sbjct: 472 MHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYG 531

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++ E +  Y+++ NIY + GK +   +V    + +GL+  P  S IEVNN+   F +G++
Sbjct: 532 MEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDK 591

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPD-KSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
            H + EK+  ++  L   +  LGYVP+ ++F+L DV+E+E E I   HSE+LAIA+G+++
Sbjct: 592 HHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENE-EKIRMYHSEKLAIAYGLLN 650

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  K+P+QI ++ R+C DCH+  K I+ IT+REI++RD++RFHHF+DG CSCGDYW
Sbjct: 651 TLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 246/468 (52%), Gaps = 10/468 (2%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VDGKKIHCS-VLKLG 58
           I   V C +  +A++ F  F L  G    + T+  ++ AC  L  + G K  C+ ++  G
Sbjct: 103 IEKLVLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNG 162

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
           FE D ++   +L M+ + G+   A +LFD+MP R++ SW  +ISGY  SGN VEA  +  
Sbjct: 163 FEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFI 222

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            MR E     P T A+++   A  + I  G  +H   +K GL  ++FVS  LI+MY+K G
Sbjct: 223 LMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCG 282

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A  VFD+M ++ +V WNSIIA Y        A   +  M+ +G++ D  T   +  
Sbjct: 283 SLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIR 342

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
           I ++L     ++ VH  ++R G F  DV+   A+VD Y+K G ++ A  VF+ +  +++I
Sbjct: 343 ICSRLASVARAKQVHASLVRNG-FGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNII 401

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SWN LI GY  +G   EAI++F+ M     + PN  T++++L A S  G   +G +I   
Sbjct: 402 SWNALIAGYGNHGHGEEAIDMFEKMLR-EGMMPNHVTFLAVLSACSISGLFERGWEIFQS 460

Query: 359 VIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           + ++  +        C++++ G+ G +D+A +L  + P + ++  W A++    +HG  +
Sbjct: 461 MTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLE 520

Query: 417 KALNFFRQMLDEGVRPDHIT-FVSLLTACSHSGLVSEGQRYFHMMQEE 463
             L  F      G+ P+ ++ ++ LL   + SG + E    F  ++ +
Sbjct: 521 --LGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRK 566



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 181/379 (47%), Gaps = 47/379 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFY-----TFPPVLKACRNL---VDGKKIHC 52
           +IS YV  G   EA      F L   +R +FY     TF  +++A   L     G+++H 
Sbjct: 204 IISGYVDSGNYVEA------FRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHS 257

Query: 53  SVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE 112
             +K G   D+FV+ +L+ MY + G    A  +FD+MP +    WN++I+GY   G + E
Sbjct: 258 CAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEE 317

Query: 113 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172
           ALD+  EMR  GV MD  T + I+ +C+R  ++     +H  +V++G   ++  +  L++
Sbjct: 318 ALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVD 377

Query: 173 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232
            Y+K+G +  A  VFD+M  R+++SWN++IA Y        A   F  M + G+ P+ +T
Sbjct: 378 FYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVT 437

Query: 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYAKLGI 281
            +++ S            S+ G +  RGW +   +  +            ++++  + G+
Sbjct: 438 FLAVLSAC----------SISG-LFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGL 486

Query: 282 INSACAVFEGLPVKDVIS-WNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQ-GTY 336
           ++ A A+    P +   + W  L+     +G   L   A E    ME      P +   Y
Sbjct: 487 LDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGME------PEKLSNY 540

Query: 337 VSILPAYSHVGALRQGIKI 355
           + +L  Y+  G L++   +
Sbjct: 541 IVLLNIYNSSGKLKEAADV 559


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/602 (38%), Positives = 342/602 (56%), Gaps = 5/602 (0%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYC 74
            +Q        P+ +TF  V  A   LVD   G+  H   +K+    DVFV +SL++MYC
Sbjct: 95  LFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYC 154

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + GL   ARK+FD MP R+S SW  MISGY     A EAL +   MR E    +     S
Sbjct: 155 KAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTS 214

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           +L      + + +G  IH   VK+GL   + V N L+ MYAK G +  AL+ F+   +++
Sbjct: 215 VLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKN 274

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
            ++W+++I  Y QS D   A   F++M  +GI+P   T V + +  + L      + VH 
Sbjct: 275 SITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHD 334

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           ++++ G F   + +  A+VDMYAK   I  A   F+ L   D++ W ++I GY QNG   
Sbjct: 335 YLLKLG-FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENE 393

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +A+ ++  ME    I PN+ T  S+L A S + AL QG +IHAR +K     +V + + L
Sbjct: 394 DALSLYGRME-MEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSAL 452

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
             MY KCG + D   +F ++P    + WNA+IS    +G G +AL  F +M  EG +PD+
Sbjct: 453 STMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDY 512

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TFV++L+ACSH GLV  G  YF MM +EFG+ P ++HY CMVD+  RAG L  A  F +
Sbjct: 513 VTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
           +  +     +W  +LGACR + N ELGA A ++L E+ S+    YVL+S+IY+ +G+WE 
Sbjct: 573 SATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWED 632

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
           V+ VR + + RG+ K PG S IE+ + V +F   ++ HP+   I+ ELR L+ +MK  GY
Sbjct: 633 VERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGY 692

Query: 615 VP 616
            P
Sbjct: 693 EP 694



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 243/477 (50%), Gaps = 7/477 (1%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101
           R+L  GK +H  ++K      V++A SL+++Y +      A+ +F+ +  +D  SWN +I
Sbjct: 20  RSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCII 78

Query: 102 SGYCQSG--NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +GY Q G   +   +++   MR E  + +  T A +    +   +   G L H   +K  
Sbjct: 79  NGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMD 138

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
              ++FV ++L+NMY K G+   A +VFD M ER+ VSW ++I+ Y        A G F 
Sbjct: 139 SCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFR 198

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
            M++     +     S+ S +       N + +H   ++ G  +  V +GNA+V MYAK 
Sbjct: 199 LMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG-LLSIVSVGNALVTMYAKC 257

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
           G ++ A   FE    K+ I+W+ +ITGYAQ+G + +A+++F  M   + I P++ T+V +
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSM-HLSGIRPSEFTFVGV 316

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 399
           + A S +GA  +G ++H  ++K      ++V T LVDMY KC  I DA   F  +     
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376

Query: 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459
           V W ++I  +  +G+ + AL+ + +M  EG+ P+ +T  S+L ACS    + +G++  H 
Sbjct: 377 VLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQ-IHA 435

Query: 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
              ++G    +     +  ++ + G L       + MP R D   W A++     +G
Sbjct: 436 RTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQNG 491



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 139/264 (52%), Gaps = 15/264 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI+ Y + G   +A+  F    L SG+RP  +TF  V+ AC +L    +GK++H  +LKL
Sbjct: 281 MITGYAQSGDSDKALKLFSSMHL-SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKL 339

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE  ++V  +L+ MY +      ARK FD +   D   W +MI GY Q+G   +AL + 
Sbjct: 340 GFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLY 399

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M +EG+  + +T+AS+L  C+    +  G  IH   VK+G    + + + L  MYAK 
Sbjct: 400 GRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKC 459

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G ++    VF +M  RDV+SWN++I+   Q+     A   F  MQ  G +PD +T V++ 
Sbjct: 460 GCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNIL 519

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGW 261
           S  + +            ++ RGW
Sbjct: 520 SACSHMG-----------LVERGW 532



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 10/221 (4%)

Query: 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390
           P+  ++ + L  Y+H  +L++G  +HA++IK+     V++A  LV++Y KC R+ +A  +
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFV 62

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKA--LNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           F ++     V WN II+ +  HG    +  +  F++M  E   P+  TF  + TA S + 
Sbjct: 63  FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS-TL 121

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           + + G R  H +  +      +     +++++ +AG    A      MP R   S W  +
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVS-WATM 180

Query: 509 LGACRIHGNMELGAVASD--RLFEVDSENVGYYVLMSNIYA 547
           +     + + +L A A    RL   + E    +V  S + A
Sbjct: 181 ISG---YASQKLAAEALGLFRLMRREEEGENEFVFTSVLSA 218


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/638 (35%), Positives = 369/638 (57%), Gaps = 19/638 (2%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  + + G+ + AR++FD MP R+  SW +M+ GY ++G+  EA  +   M  + V   
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSW 151

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  +L    R D+          +     E ++    N+I  Y + G +  A  +FD
Sbjct: 152 TVMLGGLLQE-GRVDDARK-------LFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           +M +R+VV+W ++++ Y ++     A   F  M +          VS T+++  L    +
Sbjct: 204 EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER-------NEVSWTAML--LGYTHS 254

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R      +     ++ V++ N ++  +   G ++ A  VF+G+  +D  +W+ +I  Y 
Sbjct: 255 GRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYE 314

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           + G   EA+ +F+ M+    +  N  + +S+L     + +L  G ++HA+++++    D+
Sbjct: 315 RKGYELEALGLFRRMQR-EGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDL 373

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +VA+ L+ MY KCG +  A  +F + P    V WN++I+ +  HG G++ALN F  M   
Sbjct: 374 YVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSS 433

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           GV PD +TF+ +L+ACS+SG V EG   F  M+ ++ ++P ++HY C+VDL GRA  +  
Sbjct: 434 GVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNE 493

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A   ++ MP+ PDA +WGALLGACR H  ++L  VA ++L +++ +N G YVL+SN+YA 
Sbjct: 494 AMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAY 553

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN-RTHPKYEKIYDELRNLTA 607
            G+W  V+ +R   + R + K PG S IEV  KV +F  G+ + HP+   I   L  L  
Sbjct: 554 KGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGG 613

Query: 608 KMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGD 667
            ++  GY PD SFVL DV+E+EK H L  HSE+LA+A+G++  P   PI++ KNLRVCGD
Sbjct: 614 LLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGD 673

Query: 668 CHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           CH+  K I+++T REII+RD+NRFHHFKDG CSC DYW
Sbjct: 674 CHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 214/422 (50%), Gaps = 22/422 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+  YVR G ++EA   F+     + +         +L+  R + D +K+      +  E
Sbjct: 123 MVRGYVRNGDVAEAERLFWHMPHKNVVSWTV-MLGGLLQEGR-VDDARKL----FDMMPE 176

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DV    +++  YC  G  + AR LFD+MP R+  +W AM+SGY ++G    A  + + M
Sbjct: 177 KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM 236

Query: 121 RLEGVSMDPITVASILPVCARSDNIL-SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
                  + ++  ++L     S  +  +  L     VK      + V N +I  +   G 
Sbjct: 237 ----PERNEVSWTAMLLGYTHSGRMREASSLFDAMPVK-----PVVVCNEMIMGFGLNGE 287

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239
           +  A RVF  M ERD  +W+++I  YE+    + A G F  MQ+ G+  +  +L+S+ S+
Sbjct: 288 VDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSV 347

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
              L    + + VH  ++R   F +D+ + + ++ MY K G +  A  VF   P+KDV+ 
Sbjct: 348 CVSLASLDHGKQVHAQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVM 406

Query: 300 WNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           WN++ITGY+Q+GL  EA+ VF  M  C+  + P+  T++ +L A S+ G +++G+++   
Sbjct: 407 WNSMITGYSQHGLGEEALNVFHDM--CSSGVPPDDVTFIGVLSACSYSGKVKEGLELFET 464

Query: 359 V-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
           +  K  +   +    CLVD+ G+  ++++AM L  ++P    ++ W A++     H + D
Sbjct: 465 MKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLD 524

Query: 417 KA 418
            A
Sbjct: 525 LA 526



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 206/448 (45%), Gaps = 65/448 (14%)

Query: 73  YCRFGLANVARKLFDDMPV--RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI 130
           Y R G  + ARK+FD+ P+  R   SWNAM++ Y ++    EAL + ++M          
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMP--------- 82

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
                                         + N    N LI+ + K GM+  A RVFD M
Sbjct: 83  ------------------------------QRNTVSWNGLISGHIKNGMLSEARRVFDTM 112

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +R+VVSW S++  Y ++ D   A   F  M    +    ++   +   + Q     ++R
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDAR 168

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +   +  +     DV+    ++  Y + G ++ A A+F+ +P ++V++W  +++GYA+N
Sbjct: 169 KLFDMMPEK-----DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARN 223

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI-HARVIKNCLCFDVF 369
           G    A ++F++M E NE+     ++ ++L  Y+H G +R+   +  A  +K      V 
Sbjct: 224 GKVDVARKLFEVMPERNEV-----SWTAMLLGYTHSGRMREASSLFDAMPVK-----PVV 273

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   ++  +G  G +D A  +F  +    +  W+A+I  +   G   +AL  FR+M  EG
Sbjct: 274 VCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREG 333

Query: 430 VRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           +  +  + +S+L+ C     +  G Q +  +++ EF    ++     ++ ++ + G+L  
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVA--SVLITMYVKCGNLVR 391

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHG 516
           A       P++ D  +W +++     HG
Sbjct: 392 AKQVFNRFPLK-DVVMWNSMITGYSQHG 418



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 174/382 (45%), Gaps = 68/382 (17%)

Query: 167 SNNLINMYAKFGMMRHALRVFDQ--MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           S+  I  YA+ G + HA +VFD+  +  R V SWN+++AAY ++  P  A   F  M Q 
Sbjct: 25  SSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQ- 83

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
                                 RN+ S         W        N ++  + K G+++ 
Sbjct: 84  ----------------------RNTVS---------W--------NGLISGHIKNGMLSE 104

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VF+ +P ++V+SW +++ GY +NG  +EA  +F  M   N +     ++  +L    
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV-----SWTVMLG--- 156

Query: 345 HVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403
             G L++G    AR + + +   DV   T ++  Y + GR+D+A +LF ++P+ + V W 
Sbjct: 157 --GLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWT 214

Query: 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463
           A++S +  +G+ D A   F  M +     + +++ ++L   +HSG + E    F  M   
Sbjct: 215 AMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREASSLFDAMP-- 268

Query: 464 FGIKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
             +KP +    C  M+  FG  G +  A    + M  R D   W A++      G  EL 
Sbjct: 269 --VKPVVV---CNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSAMIKVYERKG-YELE 321

Query: 522 AVASDRLFEVDSENVGYYVLMS 543
           A+   R  + +   + +  L+S
Sbjct: 322 ALGLFRRMQREGLALNFPSLIS 343



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 37/308 (12%)

Query: 276 YAKLGIINSACAVFE--GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           YA+ G ++ A  VF+   LP + V SWN ++  Y +     EA+ +F+ M + N ++ N 
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWN- 90

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFY 392
              +S        G ++ G+   AR + + +   +V   T +V  Y + G + +A  LF+
Sbjct: 91  -GLIS--------GHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFW 141

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +P  + V W  ++      G+ D A   F  M ++    D +   +++      G + E
Sbjct: 142 HMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDE 197

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
            +  F  M      K ++  +  MV  + R G + +A    + MP R + S W A+L   
Sbjct: 198 ARALFDEMP-----KRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVS-WTAML--- 248

Query: 513 RIHGNMELGAVASDRLFEV----DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
                  LG   S R+ E     D+  V   V+ + +    G    VD+ R + +    +
Sbjct: 249 -------LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKER 301

Query: 569 KTPGWSSI 576
               WS++
Sbjct: 302 DNGTWSAM 309


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/666 (37%), Positives = 392/666 (58%), Gaps = 13/666 (1%)

Query: 47   GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
            G+++H  V++ G  +  V +   L++MY + G    A  +F+ M  +DS SWN++ISG  
Sbjct: 405  GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 464

Query: 106  QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            Q+  + +A +    MR  G      T+ S L  CA    I+ G  IH   +K GL+ ++ 
Sbjct: 465  QNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 524

Query: 166  VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQA 224
            VSN L+ +YA+ G     L+VF  M E D VSWNS+I A   S   ++ A  +F  M + 
Sbjct: 525  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 584

Query: 225  GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
            G     +T +++ S V+ L+    S  +H  +++     +D  IGNA++  Y K G +N 
Sbjct: 585  GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYC-LSDDTAIGNALLSCYGKCGEMNE 643

Query: 285  ACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINPNQGTYVSILPA 342
               +F  +   +D +SWN++I+GY  N L  +A++ V+ MM++   ++    T+ +IL A
Sbjct: 644  CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD--SFTFATILSA 701

Query: 343  YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
             + V  L +G+++HA  I+ CL  DV V + LVDMY KCGRID A   F  +P  +   W
Sbjct: 702  CASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSW 761

Query: 403  NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
            N++IS +  HG G+KAL  F +M+ +G  PDH+TFV +L+ACSH G V EG  +F  M E
Sbjct: 762  NSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSE 821

Query: 463  EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHG-NMEL 520
             + + P ++H+ CMVDL GRAG L    +FI +MP++P+  IW  +LGA CR +G N EL
Sbjct: 822  VYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTEL 881

Query: 521  GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
            G  A++ L E++ +N   YVL++N+YA+  KWE V + R+  ++  +KK  G S + + +
Sbjct: 882  GRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKD 941

Query: 581  KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSER 640
             V +F  G++ HP+ + IYD+LR L  KM+  GY+P   + L D+E + KE +L+ HSE+
Sbjct: 942  GVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEK 1001

Query: 641  LAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT--EREIIVRDSNRFHHFKDGI 698
            +A+AF +++     PI+I KNLRVCGDCH+   +IS+I     ++ ++ SN     +   
Sbjct: 1002 IAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIIFFFLKMAMKPSNNI-WIRRQQ 1059

Query: 699  CSCGDY 704
            C CGD+
Sbjct: 1060 CPCGDW 1065



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 157/531 (29%), Positives = 257/531 (48%), Gaps = 27/531 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-----GKKIHCSVL 55
           +IS Y + G+  EA   F    + +G  P+ Y F   L+AC+         G +IH  + 
Sbjct: 143 LISGYTQNGKPDEACARFRDM-VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLIS 201

Query: 56  KLGFEWDVFVAASLLHMYCR-FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114
           K  +  DV V   L+ MY      AN AR +FD + +R+S SWN++IS Y + G+AV A 
Sbjct: 202 KTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAY 261

Query: 115 DILDEMRLEGV--SMDP--ITVASILPVCARSDN----ILSGLLIHLYIVKHGLEFNLFV 166
           D+   M+ EG+  S  P   T  S++     S +    +L  +L    + K G   +L+V
Sbjct: 262 DLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLAR--VEKSGFLQDLYV 319

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AG 225
           S+ L++ +A+FG+   A  +F+QM  R+VVS N ++    +      A   F  M+   G
Sbjct: 320 SSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVG 379

Query: 226 IQPD----LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI 281
           I  D    LL+  S  S++ +    R  R VH  ++R G     V IGN +V+MYAK G 
Sbjct: 380 INSDSYVVLLSAFSEFSVLEEGR--RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGA 437

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           I  AC+VFE +  KD +SWN+LI+G  QN  + +A E F  M     + P+  T +S L 
Sbjct: 438 IADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSM-PSNFTLISTLS 496

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
           + + +G +  G +IH   +K  L  DV V+  L+ +Y + G   + + +F  +P    V 
Sbjct: 497 SCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVS 556

Query: 402 WNAII-SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
           WN++I +         +A+ +F QM+  G     +TF+++L+A S   L  E     H +
Sbjct: 557 WNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL-HEVSHQIHAL 615

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
             ++ +         ++  +G+ G +         M    D   W +++  
Sbjct: 616 VLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 666



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 238/481 (49%), Gaps = 21/481 (4%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           + +++H   +K GF  ++F++ +L+++Y R G    A+KLFD+M  R+  +W  +ISGY 
Sbjct: 89  EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 148

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS--DNILSGLLIHLYIVKHGLEFN 163
           Q+G   EA     +M   G   +     S L  C  S       G+ IH  I K     +
Sbjct: 149 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 208

Query: 164 LFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           + V N LI+MY         A  VFD +  R+ +SWNSII+ Y +  D ++A+  F++MQ
Sbjct: 209 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 268

Query: 223 QAGI----QPDLLTLVSLTSIVAQLND---CRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
           + G+    +P+  T  SL +      D   C   + +    + +  F++D+ + +A+V  
Sbjct: 269 KEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLAR--VEKSGFLQDLYVSSALVSG 326

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           +A+ G+ + A  +FE + V++V+S N L+ G  +      A +VF  M++   IN +  +
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--S 384

Query: 336 YVSILPAYSHVGAL----RQGIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSL 390
           YV +L A+S    L    R+G ++HA VI+  L  + V +   LV+MY K G I DA S+
Sbjct: 385 YVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSV 444

Query: 391 FYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450
           F  +    SV WN++IS    +   + A   F +M   G  P + T +S L++C+  G +
Sbjct: 445 FELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWI 504

Query: 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLG 510
             G++  H    + G+   +     ++ L+   G           MP   D   W +++G
Sbjct: 505 MLGEQ-IHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIG 562

Query: 511 A 511
           A
Sbjct: 563 A 563



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 28/232 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS Y+    L +A+D  + F +  G R D +TF  +L AC +   L  G ++H   ++ 
Sbjct: 663 MISGYIHNELLHKAMDLVW-FMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRA 721

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E DV V ++L+ MY + G  + A + F+ MP+R+  SWN+MISGY + G+  +AL + 
Sbjct: 722 CLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLF 781

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVS---------- 167
             M L+G   D +T   +L  C+           H+  V+ G E    +S          
Sbjct: 782 TRMMLDGQPPDHVTFVGVLSACS-----------HVGFVEEGFEHFKSMSEVYRLSPRVE 830

Query: 168 --NNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHG 216
             + ++++  + G +       + M M+ +V+ W +++ A  ++N   T  G
Sbjct: 831 HFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELG 882



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%)

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T+ S++  Y       +  ++H + IK     ++F++  L+++Y + G +  A  LF ++
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
              + V W  +IS +  +G+ D+A   FR M+  G  P+H  F S L AC  SG
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 349/595 (58%), Gaps = 4/595 (0%)

Query: 112 EALDILDEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           EAL++ + + L G   MD  T  +++  C    +I     +  Y++  GL+ + ++ N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           + M+ K GMM  A R+FD+M E++++SWN+II     + D   A   F  M Q       
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
              V++    A L      R +H   ++ G    DV +  A++DMY+K G I  A  VF+
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTG-VGGDVFVACALIDMYSKCGSIEDAQCVFD 291

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P K  + WN++I GYA +G + EA+ ++  M +   +  +  T+  I+   + + +L 
Sbjct: 292 QMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSG-VKIDNFTFSIIIRICARLASLE 350

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
              + HA ++++    D+   T LVD+Y K GRI+DA  +F  +P  + + WNA+I+ +G
Sbjct: 351 HAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYG 410

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG+G +A+  F +ML EG+ P+H+TF+++L+ACS+SGL   G   F  M  +  IKP  
Sbjct: 411 NHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRA 470

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            HY CM++L GR G L  A   I++ P +P  ++W ALL ACR+H N ELG  A+++L+ 
Sbjct: 471 MHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYG 530

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E +  YV++ NIY   G+ E    V    + RGL+  P  S IE+  +   F +G++
Sbjct: 531 MGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDK 590

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
            H + ++IY +L  L  ++   GYVP   F+L DV+E E E +L  HSE+LAIAFG+I++
Sbjct: 591 CHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQE-ERVLLYHSEKLAIAFGLINT 649

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              +P+QI ++ R+CGDCH+  K I+ +T REI+VRD++RFHHFKDG CSCGDYW
Sbjct: 650 SDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 228/450 (50%), Gaps = 10/450 (2%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVA 66
           R  EA++ F    L      D  T+  ++ AC   +++   KK+   ++  G + D ++ 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
             +L M+ + G+   AR+LFD+MP ++  SWN +I G   +G+  EA  +   M      
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSD 229

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
                  +++   A    I +G  +H   +K G+  ++FV+  LI+MY+K G +  A  V
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FDQM E+  V WNSIIA Y        A   +  M+ +G++ D  T   +  I A+L   
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASL 349

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            +++  H  ++R G F  D++   A+VD+Y+K G I  A  VF+ +P K+VISWN LI G
Sbjct: 350 EHAKQAHAGLVRHG-FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLC 365
           Y  +G   EA+E+F+ M     + PN  T++++L A S+ G   +G +I   + ++  + 
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV-PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIK 467

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQ 424
                  C++++ G+ G +D+A +L    P   +V  W A+++   +H   +  L  F  
Sbjct: 468 PRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFE--LGKFAA 525

Query: 425 MLDEGVRPDHIT-FVSLLTACSHSGLVSEG 453
               G+ P+ ++ +V LL   + SG + E 
Sbjct: 526 EKLYGMGPEKLSNYVVLLNIYNXSGRLEEA 555



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 127/269 (47%), Gaps = 9/269 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ Y   G   EA+  +Y+    SG++ D +TF  +++ C  L      K+ H  +++ 
Sbjct: 304 IIAGYALHGYSEEALSMYYEMR-DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRH 362

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+    +L+ +Y ++G    A+ +FD MP ++  SWNA+I+GY   G  VEA+++ 
Sbjct: 363 GFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMF 422

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           + M  EG+  + +T  ++L  C+ S     G  I   + + H ++        +I +  +
Sbjct: 423 ERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGR 482

Query: 177 FGMMRHALRVF-DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT-LV 234
            G++  A  +  D   +  V  W +++ A     +     G F   +  G+ P+ L+  V
Sbjct: 483 EGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKN--FELGKFAAEKLYGMGPEKLSNYV 540

Query: 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            L +I         + +V   + RRG  M
Sbjct: 541 VLLNIYNXSGRLEEAAAVIQTLKRRGLRM 569


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 314/538 (58%), Gaps = 8/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++ +   G +  A RVF  M  +DV SWN++++   ++     A   F  M      
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP----- 135

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
             +   VS  ++VA L  C         + R      D I+  A+V  Y   G +  A  
Sbjct: 136 --VRNAVSWNAMVAALA-CSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAME 192

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F  +PV++++SWN ++ GY +N  A +A+ VF+ M E + + PN  T  S+L   S++ 
Sbjct: 193 FFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLS 252

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G ++H   +K  L  +V V T L+ MY KCG ++DA  +F ++     V WNA+IS
Sbjct: 253 ALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMIS 312

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G +A+  F +M DEGV PD IT +++LTAC H+GL   G + F  MQE + I+
Sbjct: 313 GYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIE 372

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY CMVDL  RAG L  A N I +MP  P  S +G LL ACR++ N+E    A+ +
Sbjct: 373 PQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARK 432

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E D +N G YV ++NIYA   KW  V  VR   +D  + KTPG+S +E+      F +
Sbjct: 433 LIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRS 492

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            +R HP+   I+D+L  L   MK++GYVPD  F L DVE+  K  +L  HSE+LAIAFG+
Sbjct: 493 NDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGL 552

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P   ++IFKNLR+CGDCHN  K IS+I +REII+RD+ RFHHF+ G CSCGDYW
Sbjct: 553 ISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 33/338 (9%)

Query: 72  MYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + C F   ++  AR++F  MPV+D  SWN M+SG  ++G + EA  +   M +       
Sbjct: 84  LSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWN 143

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
             VA++   C+        L  +       + +   VS      Y   G ++ A+  F  
Sbjct: 144 AMVAAL--ACSGDMGAAEDLFRNAPEKTDAILWTAMVSG-----YMDTGNVQKAMEFFGA 196

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRN 248
           M  R++VSWN+++A Y +++    A   F TM +  I QP+  TL S+    + L+    
Sbjct: 197 MPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGF 256

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            R VH + M+      +V +G +++ MY K G +N AC VF+ +  KD+++WN +I+GYA
Sbjct: 257 GRQVHQWCMKLP-LSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
           Q+G   +AI++F+ M++   + P+  T +++L A  H G    GI+          CF+ 
Sbjct: 316 QHGGGMQAIKLFEKMKD-EGVVPDWITLLAVLTACIHTGLCDFGIQ----------CFET 364

Query: 369 FVA-----------TCLVDMYGKCGRIDDAMSLFYQVP 395
                         +C+VD+  + G ++ A+++ + +P
Sbjct: 365 MQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMP 402



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 10/288 (3%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D  +  +++  Y   G    A + F  MPVR+  SWNA+++GY ++  A +AL +   M 
Sbjct: 170 DAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMV 229

Query: 122 LEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            +  V  +  T++S+L  C+    +  G  +H + +K  L  N+ V  +L++MY K G +
Sbjct: 230 EDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDL 289

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A +VFD+M  +D+V+WN++I+ Y Q    + A   F  M+  G+ PD +TL+++ +  
Sbjct: 290 NDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC 349

Query: 241 AQLNDCRNSRSVHGF-IMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                C     +  F  M+  + +E  I   + +VD+  + G++  A  +   +P +   
Sbjct: 350 IHTGLC--DFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHP 407

Query: 299 S-WNTLITG-YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           S + TL+T       L        +++E+  +   N G YV +   Y+
Sbjct: 408 SAYGTLLTACRVYKNLEFAEFAARKLIEQDPQ---NAGAYVQLANIYA 452



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 3/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+  R  +A+  F      S ++P+  T   VL  C NL     G+++H   +KL
Sbjct: 208 VVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKL 267

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               +V V  SLL MYC+ G  N A K+FD+M  +D  +WNAMISGY Q G  ++A+ + 
Sbjct: 268 PLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLF 327

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           ++M+ EGV  D IT+ ++L  C
Sbjct: 328 EKMKDEGVVPDWITLLAVLTAC 349



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 15/267 (5%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D +  N ++  +   G I+ A  VF  +PVKDV SWNT+++G ++NG + EA  +F++M 
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             N ++ N    V+ L     +GA     +            D  + T +V  Y   G +
Sbjct: 136 VRNAVSWN--AMVAALACSGDMGAAEDLFRNAPEKT------DAILWTAMVSGYMDTGNV 187

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTA 443
             AM  F  +P  + V WNA+++ +  + + D AL  F+ M+++  V+P+  T  S+L  
Sbjct: 188 QKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLG 247

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS+   +  G R  H    +  +  ++     ++ ++ + G L  A      M  + D  
Sbjct: 248 CSNLSALGFG-RQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIV 305

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE 530
            W A++     HG    G + + +LFE
Sbjct: 306 AWNAMISGYAQHG----GGMQAIKLFE 328


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 349/595 (58%), Gaps = 4/595 (0%)

Query: 112 EALDILDEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
           EAL++ + + L G   MD  T  +++  C    +I     +  Y++  GL+ + ++ N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           + M+ K GMM  A R+FD+M E++++SWN+II     + D   A   F  M Q       
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
              V++    A L      R +H   ++ G    DV +  A++DMY+K G I  A  VF+
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTG-VGGDVFVACALIDMYSKCGSIEDAQCVFD 291

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P K  + WN++I GYA +G + EA+ ++  M +   +  +  T+  I+   + + +L 
Sbjct: 292 QMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSG-VKIDNFTFSIIIRICARLASLE 350

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
              + HA ++++    D+   T LVD+Y K GRI+DA  +F  +P  + + WNA+I+ +G
Sbjct: 351 HAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYG 410

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG+G +A+  F +ML EG+ P+H+TF+++L+ACS+SGL   G   F  M  +  IKP  
Sbjct: 411 NHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRA 470

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
            HY CM++L GR G L  A   I++ P +P  ++W ALL ACR+H N ELG  A+++L+ 
Sbjct: 471 MHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYG 530

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           +  E +  YV++ NIY   G+ E    V    + RGL+  P  S IE+  +   F +G++
Sbjct: 531 MGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDK 590

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
            H + ++IY +L  L  ++   GYVP   F+L DV+E E E +L  HSE+LAIAFG+I++
Sbjct: 591 CHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQE-ERVLLYHSEKLAIAFGLINT 649

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              +P+QI ++ R+CGDCH+  K I+ +T REI+VRD++RFHHFKDG CSCGDYW
Sbjct: 650 SDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 229/450 (50%), Gaps = 10/450 (2%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVA 66
           R  EA++ F    L      D  T+  ++ AC   +++   KK+   ++  G + D ++ 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS 126
             +L M+ + G+   AR+LFD+MP ++  SWN +I G   +G+  EA  +   M  +   
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSD 229

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
                  +++   A    I +G  +H   +K G+  ++FV+  LI+MY+K G +  A  V
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289

Query: 187 FDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246
           FDQM E+  V WNSIIA Y        A   +  M+ +G++ D  T   +  I A+L   
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASL 349

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
            +++  H  ++R G F  D++   A+VD+Y+K G I  A  VF+ +P K+VISWN LI G
Sbjct: 350 EHAKQAHAGLVRHG-FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLC 365
           Y  +G   EA+E+F+ M     + PN  T++++L A S+ G   +G +I   + ++  + 
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV-PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIK 467

Query: 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHGQGDKALNFFRQ 424
                  C++++ G+ G +D+A +L    P   +V  W A+++   +H   +  L  F  
Sbjct: 468 PRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFE--LGKFAA 525

Query: 425 MLDEGVRPDHIT-FVSLLTACSHSGLVSEG 453
               G+ P+ ++ +V LL   + SG + E 
Sbjct: 526 EKLYGMGPEKLSNYVVLLNIYNRSGRLEEA 555



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 21/361 (5%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDF-----YTFPPVLKACRNL---VDGKKIHCSVLKLGFE 60
           G L +A D F  F L   +  DF       F  +++A   L     G+++H   LK G  
Sbjct: 205 GGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVG 264

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
            DVFVA +L+ MY + G    A+ +FD MP + +  WN++I+GY   G + EAL +  EM
Sbjct: 265 GDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEM 324

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R  GV +D  T + I+ +CAR  ++      H  +V+HG   ++  +  L+++Y+K+G +
Sbjct: 325 RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRI 384

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A  VFD M  ++V+SWN++IA Y      + A   F  M   G+ P+ +T +++ S  
Sbjct: 385 EDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSAC 444

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS- 299
           +          +   + R        +    ++++  + G+++ A A+ +  P K  ++ 
Sbjct: 445 SYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNM 504

Query: 300 WNTLITGYAQNGLASEAIEVFQM----MEECNEINPNQ-GTYVSILPAYSHVGALRQGIK 354
           W  L+T       A    + F++     E+   + P +   YV +L  Y+  G L +   
Sbjct: 505 WAALLT-------ACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAA 557

Query: 355 I 355
           +
Sbjct: 558 V 558


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 346/583 (59%), Gaps = 7/583 (1%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHA 183
           +D +   + + + ++ +++   + I  Y +K  +E   FV+  LIN   +      M +A
Sbjct: 24  IDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYA 82

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             +F+ M E D+V +NS+   Y +  +P+     F  + + GI PD  T  SL    A  
Sbjct: 83  RHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVA 142

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R +H   M+ G   ++V +   +++MY +   ++SA  VF+ +    V+ +N +
Sbjct: 143 KALEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           ITGYA+    +EA+ +F+ M+    + PN+ T +S+L + + +G+L  G  IH    K+ 
Sbjct: 202 ITGYARRNRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
            C  V V T L+DM+ KCG +DDA+S+F ++    +  W+A+I  +  HG+ +K++  F 
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M  E V+PD ITF+ LL ACSH+G V EG++YF  M  +FGI P +KHYG MVDL  RA
Sbjct: 321 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRA 380

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G+L  A+ FI  +P+ P   +W  LL AC  H N++L    S+R+FE+D  + G YV++S
Sbjct: 381 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 440

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           N+YA   KWE VD +R + +DR   K PG SSIEVNN V  F++G+       K++  L 
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500

Query: 604 NLTAKMKSLGYVPDKSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
            +  ++K  GYVPD S V+  ++ + EKE  L  HSE+LAI FG++++PP + I++ KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           RVC DCHN  K IS I  R++++RD  RFHHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 201/388 (51%), Gaps = 10/388 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA----NVARKLFDDMPVR 92
           ++  C +L +  +I    +K   E DV   A L++ +C         + AR LF+ M   
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEP 92

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D   +N+M  GY +  N +E   +  E+  +G+  D  T  S+L  CA +  +  G  +H
Sbjct: 93  DIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH 152

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K GL+ N++V   LINMY +   +  A  VFD+++E  VV +N++I  Y + N P 
Sbjct: 153 CLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPN 212

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  MQ   ++P+ +TL+S+ S  A L      + +H +  ++  F + V +  A+
Sbjct: 213 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY-AKKHSFCKYVKVNTAL 271

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DM+AK G ++ A ++FE +  KD  +W+ +I  YA +G A +++ +F+ M   N + P+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN-VQPD 330

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T++ +L A SH G + +G K  ++++ K  +   +     +VD+  + G ++DA    
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI 390

Query: 392 YQVPRS-SSVPWNAIISCHGIHGQGDKA 418
            ++P S + + W  +++    H   D A
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLA 418



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 178/358 (49%), Gaps = 14/358 (3%)

Query: 9   GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
            R +  ++ F  F   L  G+ PD YTFP +LKAC   + L +G+++HC  +KLG + +V
Sbjct: 105 SRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNV 164

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           +V  +L++MY      + AR +FD +       +NAMI+GY +     EAL +  EM+ +
Sbjct: 165 YVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK 224

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            +  + IT+ S+L  CA   ++  G  IH Y  KH     + V+  LI+M+AK G +  A
Sbjct: 225 YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           + +F++M  +D  +W+++I AY        +   F  M+   +QPD +T + L +  +  
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISWNT 302
                 R     ++ +   +  +    ++VD+ ++ G +  A    + LP+    + W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS------HVGALRQGIK 354
           L+   + +     A +V + + E ++   + G YV +   Y+      +V +LR+ +K
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDD--SHGGDYVILSNLYARNKKWEYVDSLRKVMK 460


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/576 (40%), Positives = 331/576 (57%), Gaps = 5/576 (0%)

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A+IL  C  S  +  G  +H  ++  G   +  ++  L+++YA  G +  A RVFD+M  
Sbjct: 72  ATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPN 131

Query: 193 R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSR 250
           + +V  WN +I AY +      A   +  M   G ++PD  T   +    A L D    R
Sbjct: 132 QGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGR 191

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VH  +MR  W   DV +   ++DMYAK G ++ A AVF    ++D   WN++I    QN
Sbjct: 192 EVHDRVMRTNW-ATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQN 250

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G  +EA+ + + M     I P   T VS + A +   AL +G ++H    +        +
Sbjct: 251 GRPAEALTLCRNMA-AEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKL 309

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG- 429
            T L+DMY K G +  A  LF Q+     + WNA+I   G+HG  D A   F +M  E  
Sbjct: 310 KTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQ 369

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           V PDHITFV +L+AC+H G+V E +  F +M   + IKP ++HY C+VD+ G +G    A
Sbjct: 370 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEA 429

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549
            + I+ M V+PD+ IWGALL  C+IH N+EL  +A  +L E++ E+ G YVL+SNIYA  
Sbjct: 430 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAES 489

Query: 550 GKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKM 609
           GKWE    VR L  +RGLKK    S IE+  K   F  G+ +HP+ + IY+EL  L   +
Sbjct: 490 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLI 549

Query: 610 KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCH 669
              GYVPD + V  +VE+DEK +++  HSERLAIAFG+IS+PP++ + + KNLRVC DCH
Sbjct: 550 SQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCH 609

Query: 670 NWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              K ISQI +REII+RD NR+HHF +G CSC D+W
Sbjct: 610 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 219/454 (48%), Gaps = 36/454 (7%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90
           +  +L++C   R +  G+++H  +L  G   D  +A  L+ +Y   G  ++AR++FD+MP
Sbjct: 71  YATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP 130

Query: 91  VRDSGS---WNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNI 145
             + G+   WN +I  Y + G    A+++   M   G SM P   T   +L  CA   ++
Sbjct: 131 --NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYG-SMKPDNFTYPPVLKACAALLDL 187

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
            +G  +H  +++     ++FV   LI+MYAK G M  A  VF+    RD   WNS+IAA 
Sbjct: 188 SAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAAC 247

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+  P  A      M   GI P + TLVS  S  A  +     R +HG+  RRG+  +D
Sbjct: 248 GQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQD 307

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +  +++DMYAK G +  A  +FE L  +++ISWN +I G+  +G A  A E+F  M  
Sbjct: 308 K-LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRS 366

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-----------TCL 374
             ++ P+  T+V +L A +H G +++  ++          FD+ V            TCL
Sbjct: 367 EAQVMPDHITFVGVLSACNHGGMVQEAKEV----------FDLMVTVYSIKPTVQHYTCL 416

Query: 375 VDMYGKCGRIDDAMSLFY-QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           VD+ G  GR  +A  +    + +  S  W A+++   IH   + A     Q L E    D
Sbjct: 417 VDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELA-ELALQKLIELEPED 475

Query: 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
              +V L    + SG   E  R   +M    G+K
Sbjct: 476 AGNYVLLSNIYAESGKWEEAARVRKLMTNR-GLK 508



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 187/387 (48%), Gaps = 13/387 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y R G    A++ +        ++PD +T+PPVLKAC  L+D   G+++H  V++ 
Sbjct: 141 LIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRT 200

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            +  DVFV   L+ MY + G  + A  +F+D  +RD+  WN+MI+   Q+G   EAL + 
Sbjct: 201 NWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLC 260

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG++    T+ S +   A +  +  G  +H Y  + G      +  +L++MYAK 
Sbjct: 261 RNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKS 320

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ-QAGIQPDLLTLVSL 236
           G +  A  +F+Q++ R+++SWN++I  +        A   F+ M+ +A + PD +T V +
Sbjct: 321 GWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGV 380

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S        + ++ V   ++        V     +VD+    G    A  V +G+ VK 
Sbjct: 381 LSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKP 440

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQM-MEECNEINP-NQGTYVSILPAYSHVGALRQGI 353
           D   W  L+ G   +    + +E+ ++ +++  E+ P + G YV +   Y+  G   +  
Sbjct: 441 DSGIWGALLNGCKIH----KNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAA 496

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGK 380
           ++   +    L     +A   +++ GK
Sbjct: 497 RVRKLMTNRGL--KKIIACSWIELKGK 521



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 10/190 (5%)

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           N   Y +IL +     A+R G ++HAR++ +    D  +AT LVD+Y  CG +  A  +F
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 392 YQVPRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGL 449
            ++P   +V  WN +I  +   G  + A+  +R ML  G ++PD+ T+  +L AC+    
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 450 VSEGQR-YFHMMQEEFGIKPHLKHYGC--MVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +S G+  +  +M+  +        + C  ++D++ + G +  A     +  +R DA++W 
Sbjct: 187 LSAGREVHDRVMRTNWATDV----FVCTGLIDMYAKCGCMDEAWAVFNDTTIR-DAAVWN 241

Query: 507 ALLGACRIHG 516
           +++ AC  +G
Sbjct: 242 SMIAACGQNG 251


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 381/715 (53%), Gaps = 16/715 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           +IS YV+   L + +  F +     GL+ D Y     L AC    NL  GK IH  +L  
Sbjct: 38  LISGYVQMSNLDKVMILFDK-ARRLGLKLDKYNCAGALTACSQSGNLSAGKMIHGLILVY 96

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    V +  SL+ MY + G  + AR LFD     D  SWN++I+GY Q+G   E L IL
Sbjct: 97  GLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTIL 156

Query: 118 DEMRLEGVSMDPITVASILPVCARSDN--ILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            +M   G++ +  T+ S L  C+ + N   + G ++H + +K GL  ++ V   L++MYA
Sbjct: 157 QKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYA 216

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-----PITAHGFFTTMQQAGIQPDL 230
           K G +  A+++FDQM++++VV +N+++A   Q           A   F  M+  GI+P +
Sbjct: 217 KTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSM 276

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T  SL      + D + ++ VH  + + G  + D  IG+ ++D+Y+ LG +  A   F 
Sbjct: 277 FTYSSLLKACIIVEDFKFAKQVHALMCKNG-LLSDEYIGSILIDLYSVLGSMMDALLCFN 335

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +    ++    +I GY QNG    A+ +F  +    E  P++  + +I+ + +++G LR
Sbjct: 336 SIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEE-KPDEFIFSTIMSSCANMGMLR 394

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G +I     K  +          + MY K G +  A   F Q+     V W+ +I  + 
Sbjct: 395 SGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNA 454

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            HG   +AL FF  M   G+ P+H  F+ +L ACSH GLV EG RYF  M++++ +K H+
Sbjct: 455 QHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHV 514

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           KH  C+VDL GRAG L  A + I  +    +  +W ALL ACRIH +       + ++ E
Sbjct: 515 KHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIE 574

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++      YVL+ NIY + G      +VR+L  +R +KK PG S I++ +KV  F +G+R
Sbjct: 575 LEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDR 634

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
           +H    +IY +L  + A  K L    D   +L    E E    +  HSE+LA+AFG++  
Sbjct: 635 SHKNSGQIYAKLDEMLATTKRLDSAKD---ILGYKIEHEHLTNVNYHSEKLAVAFGVLYL 691

Query: 651 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
              +P+++ KNLR+C DCH   K  S + +RE+IVRDS RFHHFKDG CSCGDYW
Sbjct: 692 SESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHHFKDGSCSCGDYW 746



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 243/465 (52%), Gaps = 15/465 (3%)

Query: 74  CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVA 133
           C+ G    A KLFD M   +  ++N++ISGY Q  N  + + + D+ R  G+ +D    A
Sbjct: 12  CKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCA 71

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193
             L  C++S N+ +G +IH  I+ +GL   + ++N+LI+MY+K G + +A  +FD   + 
Sbjct: 72  GALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKL 131

Query: 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRN-SRS 251
           D VSWNS+IA Y Q+            M Q G+  +  TL S L +  +  N C+     
Sbjct: 132 DGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTM 191

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-- 309
           +H   ++ G  + DV++G A++DMYAK G ++ A  +F+ +  K+V+ +N ++ G  Q  
Sbjct: 192 LHDHAIKLGLHL-DVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQE 250

Query: 310 ---NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
              +  A +A+ +F  M+ C  I P+  TY S+L A   V   +   ++HA + KN L  
Sbjct: 251 TIEDKCAYKALNLFFEMKSCG-IKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLS 309

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           D ++ + L+D+Y   G + DA+  F  +   + VP  A+I  +  +G+ + AL+ F ++L
Sbjct: 310 DEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELL 369

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
               +PD   F +++++C++ G++  G++       + GI          + ++ ++G L
Sbjct: 370 TYEEKPDEFIFSTIMSSCANMGMLRSGEQ-IQGHATKVGISRFTIFQNSQIWMYAKSGDL 428

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
             A+   Q M   PD   W  ++ +   HG+    A+ + R FE+
Sbjct: 429 YAANLTFQQME-NPDIVSWSTMICSNAQHGH----AMEALRFFEL 468


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 352/647 (54%), Gaps = 14/647 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV++   ++  Y R    + A +LF +MPV+D  SWN+MI G     +   A  + DEM 
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP 100

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              V      +   L        +  GL   +         ++   N++I  Y   G + 
Sbjct: 101 ERSVVSWTTMINGFLQF--GKIEVAEGLFYKMPFR------DIAAWNSMIYGYCCNGRVE 152

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ--PDLLTLVSLTSI 239
             LR+F +M  R+V+SW S+I   +Q      A G F  M   G++  P   T   + + 
Sbjct: 153 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 212

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A  +       +H  + + G+   D  I  A++  YA    +  +  VF G    +V+ 
Sbjct: 213 CANASALYQGVQIHAHVFKLGYSF-DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVI 271

Query: 300 WNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           W  L+TGY  N    +A++VF +MM E   + PNQ ++ S L +   + AL  G +IH  
Sbjct: 272 WTALVTGYGLNCKHEDALKVFGEMMRE--GVLPNQSSFTSALNSCCGLEALDWGREIHTA 329

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  L  DVFV   L+ MY +CG ++D + +F ++ + + V WN++I     HG G  A
Sbjct: 330 AVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWA 389

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L FF QM+   V PD ITF  LL+ACSHSG+  +G+  F    E    +  L HY CMVD
Sbjct: 390 LAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVD 449

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           + GR+G L  A   I+NMPV+ ++ +W  LL AC +H  +E+   A+  + +++      
Sbjct: 450 ILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSA 509

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SN+YA+  +W  V  +R   + RG+ K PG S I +    + F +G+R+HP  ++I
Sbjct: 510 YVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRI 569

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y +L  L  K+K LGYVPD+ F L DVE+++KE +L+ HSERLAI FG+IS+   S I +
Sbjct: 570 YQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITV 629

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLRVCGDCH+  K I++I  R+IIVRDS RFHHF DG CSCGDYW
Sbjct: 630 MKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 216/467 (46%), Gaps = 53/467 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y R  R   A+  FY+  +      D  ++  ++K C +  D    +K+   +   
Sbjct: 48  MITGYARNYRFDHALQLFYEMPV-----KDVVSWNSMIKGCFDCADLTMARKLFDEMP-- 100

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC------------ 105
             E  V    ++++ + +FG   VA  LF  MP RD  +WN+MI GYC            
Sbjct: 101 --ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLF 158

Query: 106 -------------------QSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDN 144
                              Q G + EAL +  +M   GV + P   T   ++  CA +  
Sbjct: 159 QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASA 218

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +  G+ IH ++ K G  F+ ++S  LI  YA    M  +LRVF   +  +VV W +++  
Sbjct: 219 LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTG 278

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y  +     A   F  M + G+ P+  +  S  +    L      R +H   ++ G    
Sbjct: 279 YGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG-LET 337

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV +GN+++ MY + G +N    +F+ +  K+++SWN++I G AQ+G    A+  F  M 
Sbjct: 338 DVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMV 397

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKC 381
             + + P++ T+  +L A SH G  ++G  +     +N    +  D +   C+VD+ G+ 
Sbjct: 398 R-SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY--ACMVDILGRS 454

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           G++++A  L   +P +++S+ W  ++S   +H + + A    + ++D
Sbjct: 455 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIID 501


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 312/538 (57%), Gaps = 8/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L++ +   G +  A RVF  M  RDV SWN++++   ++     A   F  M      
Sbjct: 76  NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNA- 134

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
                 VS  ++VA      +  +    + R      D I+  A+V  Y   G +  A  
Sbjct: 135 ------VSWNAMVAARASSGDMGAAEN-LFRNAPEKTDAILWTAMVSGYMDTGNVQKAME 187

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            F  +PV++++SWN ++ GY +N  A +A+ VF+ M E   + PN  T  S+L   S++ 
Sbjct: 188 YFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLS 247

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G ++H   +K  L   + V T L+ MY KCG +DDA  LF ++     V WNA+IS
Sbjct: 248 ALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMIS 307

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G KA+  F +M DEGV PD IT +++LTAC H+GL   G + F  MQE + I+
Sbjct: 308 GYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIE 367

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY CMVDL  RAG L  A N I +MP  P  S +G LL ACR++ N+E    A+ +
Sbjct: 368 PQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARK 427

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E D +N G YV ++NIYA   +W+ V  VR   +D  + KTPG+S +E+      F +
Sbjct: 428 LIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRS 487

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            +R HP+ + I+D+L  L   MK++GY PD  F L DVEE  K  +L  HSE+LAIAFG+
Sbjct: 488 NDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGL 547

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+ P   ++IFKNLR+CGDCHN  K IS+I +REII+RD+ RFHHF+ G CSCGDYW
Sbjct: 548 ISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 173/340 (50%), Gaps = 37/340 (10%)

Query: 72  MYCRFGLANV--ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMD 128
           + C F   ++  A ++F  MPVRD  SWN M+SG  ++G   EA  +   M     VS +
Sbjct: 79  LSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWN 138

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAKFGMMRHALRVF 187
            +       V AR+ +   G   +L+  ++  E  +  +   +++ Y   G ++ A+  F
Sbjct: 139 AM-------VAARASSGDMGAAENLF--RNAPEKTDAILWTAMVSGYMDTGNVQKAMEYF 189

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDC 246
             M  R++VSWN+++A Y +++    A   F TM + A +QP+  TL S+    + L+  
Sbjct: 190 RAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSAL 249

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
              R VH + M+       + +G +++ MY K G ++ AC +F+ +  KD+++WN +I+G
Sbjct: 250 GFGRQVHQWCMKLP-LGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISG 308

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YAQ+G   +AI++F+ M++   + P+  T +++L A  H G    GI+          CF
Sbjct: 309 YAQHGGGRKAIKLFEKMKD-EGVVPDWITLLAVLTACIHTGLCDFGIQ----------CF 357

Query: 367 DVFVA-----------TCLVDMYGKCGRIDDAMSLFYQVP 395
           +               +C+VD+  + G ++ A+++ + +P
Sbjct: 358 ETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMP 397



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 142/288 (49%), Gaps = 10/288 (3%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           D  +  +++  Y   G    A + F  MPVR+  SWNA+++GY ++  A +AL +   M 
Sbjct: 165 DAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMV 224

Query: 122 LEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
            +  V  +P T++S+L  C+    +  G  +H + +K  L  ++ V  +L++MY K G +
Sbjct: 225 EDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDL 284

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A ++FD+M  +D+V+WN++I+ Y Q      A   F  M+  G+ PD +TL+++ +  
Sbjct: 285 DDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC 344

Query: 241 AQLNDCRNSRSVHGF-IMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVKDVI 298
                C     +  F  M+  + +E  +   + +VD+  + G++  A  +   +P +   
Sbjct: 345 IHTGLC--DFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHP 402

Query: 299 S-WNTLITG-YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           S + TL+T       L        +++E+  +   N G YV +   Y+
Sbjct: 403 SAYGTLLTACRVYKNLEFAEFAARKLIEQDPQ---NAGAYVQLANIYA 447



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 3/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+  R  +A+  F      + ++P+  T   VL  C NL     G+++H   +KL
Sbjct: 203 VVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKL 262

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                + V  SLL MYC+ G  + A KLFD+M  +D  +WNAMISGY Q G   +A+ + 
Sbjct: 263 PLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLF 322

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           ++M+ EGV  D IT+ ++L  C
Sbjct: 323 EKMKDEGVVPDWITLLAVLTAC 344



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 15/267 (5%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D +  N ++  +   G I+ A  VF  +PV+DV SWNT+++G ++NG   EA  +F+ M 
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             N ++ N     +++ A +  G +     +     +     D  + T +V  Y   G +
Sbjct: 131 ARNAVSWN-----AMVAARASSGDMGAAENLFRNAPEKT---DAILWTAMVSGYMDTGNV 182

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTA 443
             AM  F  +P  + V WNA+++ +  + +   AL  F+ M+++  V+P+  T  S+L  
Sbjct: 183 QKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLG 242

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS+   +  G R  H    +  +   +     ++ ++ + G L  A      M  + D  
Sbjct: 243 CSNLSALGFG-RQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK-DIV 300

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE 530
            W A++     HG    G   + +LFE
Sbjct: 301 AWNAMISGYAQHG----GGRKAIKLFE 323



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 373 CLVDMYGKC---GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           CL+  Y K    GR+ DA  LF  +P   +V +N ++SCH   G  D A   F  M    
Sbjct: 43  CLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTM---P 99

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           VR D  ++ ++++  S +G + E +  F  M     +      +  MV     +G +G A
Sbjct: 100 VR-DVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVS-----WNAMVAARASSGDMGAA 153

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHGNME 519
            N  +N P + DA +W A++      GN++
Sbjct: 154 ENLFRNAPEKTDAILWTAMVSGYMDTGNVQ 183


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 316/560 (56%), Gaps = 3/560 (0%)

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH  +   G        N L++MYAK G +  A  +F+ ++ER VVSW+++I AY  
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 208 SNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-D 265
                 A   F  M+  G ++P+ +T   + +    + D    R +H   M  G     +
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
            I+ NA+++MY + G +  A  VF+ +   D  SW ++IT   +N    EA+E+F  M  
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN- 182

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
              I P   T  S+L A +  GAL+ G +IH+R+  +     V   T L+DMY KCG ++
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            +  +F  +   +SV W A+I+    HGQGD+AL  F++M  EG+  D  TF+ +L ACS
Sbjct: 243 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 302

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
           H+GL+ E   +FH M E++ I P   HY   +D  GRAG L  A   I +MP  P+   W
Sbjct: 303 HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTW 362

Query: 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565
             LL ACRIH   E     ++ L ++  E+   Y L+ N+YA  G++     VR    DR
Sbjct: 363 KTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDR 422

Query: 566 GLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           GLKK PG S IEV NKV  F  G+R HP  ++I  EL  L  +M+  GYVP+   VL  V
Sbjct: 423 GLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAV 482

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
            E+EKE ++  HSE+LAIAFG+I++PP +P+ I KNLRVC DCH  TK I++I  R I+V
Sbjct: 483 NEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVV 542

Query: 686 RDSNRFHHFKDGICSCGDYW 705
           RD++RFHHF+DG CSC DYW
Sbjct: 543 RDTHRFHHFEDGQCSCKDYW 562



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 182/378 (48%), Gaps = 7/378 (1%)

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           +G++IH  +   GF         L+ MY + G  + AR +F+ +  R   SW+AMI  Y 
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 106 QSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHG--LEF 162
             G   EAL +   MR +G V  + +T   +   C   +++  G  IH   +  G     
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N  + N L+NMY + G +  A +VFD M   D  SW S+I A  ++ + + A   F  M 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             GI P  +TL S+ +  A     +  + +H  +   G F   V+   A++DMYAK G +
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASG-FHSSVLAQTALLDMYAKCGSL 241

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             +  VF  +  ++ +SW  +I   AQ+G   EA+E+F+ M     +  +  T++ +L A
Sbjct: 242 ECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEM-NLEGMVADATTFICVLRA 300

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATC-LVDMYGKCGRIDDAMSLFYQVP-RSSSV 400
            SH G +++ ++    ++++          C  +D  G+ GR+ DA  L + +P    ++
Sbjct: 301 CSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 401 PWNAIISCHGIHGQGDKA 418
            W  +++   IH Q ++A
Sbjct: 361 TWKTLLNACRIHSQAERA 378



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 18/337 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  Y   GR  EA+  F++      + P+  TF  V  AC    +L  G++IH   +  
Sbjct: 57  MIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMAS 116

Query: 58  G--FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           G     +  +  +LL+MY R G    ARK+FD M   D+ SW +MI+   ++   +EAL+
Sbjct: 117 GELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALE 176

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +   M LEG+    +T+AS+L  CA S  +  G  IH  +   G   ++     L++MYA
Sbjct: 177 LFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYA 236

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G +  + +VF  M  R+ VSW ++IAA  Q      A   F  M   G+  D  T + 
Sbjct: 237 KCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFIC 296

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA------VVDMYAKLGIINSACAVF 289
           +      L  C ++  +   +      +ED  I          +D   + G +  A  + 
Sbjct: 297 V------LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELI 350

Query: 290 EGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             +P   + ++W TL+     +  A  A +V +++ +
Sbjct: 351 HSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSK 387


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/547 (40%), Positives = 325/547 (59%), Gaps = 19/547 (3%)

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E +LF  N ++  Y +   ++ A  +F++M ERD+VSWN++++ Y Q+     A   F  
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 221 MQ-QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           M  + GI  + L       + A + + R   +   F  +  W    ++  N ++      
Sbjct: 83  MPLKNGISWNGL-------LAAYVQNGRIEDAKRLFESKMDW---TLVSWNCLMG----- 127

Query: 280 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVS 338
           G +     +F+ +P +D ISW+ +I GY+QNG + EA+  F +M  +C  +N  + ++  
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLN--RSSFTC 185

Query: 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
            L   S++ AL  G ++H R++K       +V   L+ MY KCG ID+A   F ++    
Sbjct: 186 ALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKD 245

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V WN +I  +  HG G++AL  F  M   G+RPD  T VS+L ACSH+GLV +G  YF+
Sbjct: 246 VVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFY 305

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            M  ++GI   L HY CMVDL GRAG L  A N ++NMP  PDA+ WGALLGA RIHGN 
Sbjct: 306 SMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNT 365

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           ELG  A+  +FE++  N G Y+L+S +YA  G+W    ++R   R++G+KK PG+S +EV
Sbjct: 366 ELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEV 425

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHS 638
            NK+  F  G+ +HP  +KIY  L  +  K+K  GY+   + V  DVEE+EK H+L  HS
Sbjct: 426 QNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHS 485

Query: 639 ERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGI 698
           E+LA+A+GI+  P   PI++ KNLRVC DCHN  K+IS+I  R II+RD++RFH+F+ G 
Sbjct: 486 EKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGS 545

Query: 699 CSCGDYW 705
           CSC D+W
Sbjct: 546 CSCRDFW 552



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 191/372 (51%), Gaps = 22/372 (5%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E D+F    +L  Y R      AR LF+ MP RD  SWNAM+SGY Q+G   EA +I  +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 120 MRLE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           M L+ G+S + +  A +     R ++          + +  +++ L   N L+      G
Sbjct: 83  MPLKNGISWNGLLAAYVQN--GRIEDAKR-------LFESKMDWTLVSWNCLMG-----G 128

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +R    +FD M +RD +SW+++IA Y Q+     A  FF  MQ+   + +  +     S
Sbjct: 129 FVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALS 188

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             + +      R +H  +++ G +     +GNA++ MY K G I+ A   F+ +  KDV+
Sbjct: 189 TCSNIAALELGRQLHCRLVKAG-YQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVV 247

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           SWNT+I GYA++G   EA+ VF++M+    I P+  T VS+L A SH G + QG +    
Sbjct: 248 SWNTMIHGYARHGFGEEALTVFELMKTTG-IRPDDATMVSVLAACSHAGLVDQGSEYFYS 306

Query: 359 VIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ-- 414
           + ++  +   +   TC+VD+ G+ G++++A +L   +P    +  W A++    IHG   
Sbjct: 307 MNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366

Query: 415 -GDKALNFFRQM 425
            G+KA     +M
Sbjct: 367 LGEKAAQIIFEM 378



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 166/352 (47%), Gaps = 22/352 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           M+S Y + G + EA + FY+  L +G+  +      V      + D K++  S +    +
Sbjct: 63  MLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNG--RIEDAKRLFESKM----D 116

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W +     L+      G     R LFD+MP RDS SW+AMI+GY Q+G + EAL    EM
Sbjct: 117 WTLVSWNCLMG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEM 171

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           + +   ++  +    L  C+    +  G  +H  +VK G +   +V N L+ MY K G +
Sbjct: 172 QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSI 231

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
             A   F +++E+DVVSWN++I  Y +      A   F  M+  GI+PD  T+VS+ +  
Sbjct: 232 DEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAAC 291

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK-DVI 298
           +      +  S + + M R + +   ++    +VD+  + G +  A  + + +P + D  
Sbjct: 292 SHAG-LVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAA 350

Query: 299 SWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           +W  L+     +G   L  +A ++   ME       N G Y+ +   Y+  G
Sbjct: 351 TWGALLGASRIHGNTELGEKAAQIIFEMEP-----HNSGMYILLSKLYAASG 397


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/537 (40%), Positives = 327/537 (60%), Gaps = 44/537 (8%)

Query: 173 MYAKF---GMMRHALRVFDQMMERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQP 228
           MYAK    G +  + +VF+QM E +V+SW +II AY QS +    A   F  M  A +  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV-- 58

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
                           +C                     +GN+++ MYA+ G +  A   
Sbjct: 59  ----------------NC---------------------VGNSLISMYARSGRMEDARKA 81

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F+ L  K+++S+N ++ GYA+N  + EA  +F  + +   I  +  T+ S+L   + +GA
Sbjct: 82  FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG-IGISAFTFASLLSGAASIGA 140

Query: 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408
           + +G +IH R++K     +  +   L+ MY +CG I+ A  +F ++   + + W ++I+ 
Sbjct: 141 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 200

Query: 409 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468
              HG   +AL  F +ML+ G +P+ IT+V++L+ACSH G++SEGQ++F+ M +E GI P
Sbjct: 201 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 260

Query: 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528
            ++HY CMVDL GR+G L  A  FI +MP+  DA +W  LLGACR+HGN ELG  A++ +
Sbjct: 261 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 320

Query: 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 588
            E + ++   Y+L+SN++A+ G+W+ V ++R   ++R L K  G S IEV N+V  F+ G
Sbjct: 321 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 380

Query: 589 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 648
             +HP+  +IY EL  L +K+K +GY+PD  FVL D+EE++KE  L  HSE++A+AFG+I
Sbjct: 381 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 440

Query: 649 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+    PI+IFKNLRVCGDCH   K+IS  T REI+VRDSNRFHH K+G+CSC DYW
Sbjct: 441 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 45/369 (12%)

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA-VEALDILDEMRLEGVSMDPITVASI 135
           G  + +RK+F+ MP  +  SW A+I+ Y QSG    EA+++  +M    V+         
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC-------- 60

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
                                         V N+LI+MYA+ G M  A + FD + E+++
Sbjct: 61  ------------------------------VGNSLISMYARSGRMEDARKAFDILFEKNL 90

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           VS+N+I+  Y ++     A   F  +   GI     T  SL S  A +        +HG 
Sbjct: 91  VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 150

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           +++ G +  +  I NA++ MY++ G I +A  VF  +  ++VISW ++ITG+A++G A+ 
Sbjct: 151 LLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 209

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK-IHARVIKNCLCFDVFVATCL 374
           A+E+F  M E     PN+ TYV++L A SHVG + +G K  ++   ++ +   +    C+
Sbjct: 210 ALEMFHKMLETG-TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 268

Query: 375 VDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433
           VD+ G+ G + +AM     +P  + ++ W  ++    +HG  +   +    +L++   PD
Sbjct: 269 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPD 326

Query: 434 HITFVSLLT 442
                 LL+
Sbjct: 327 DPAAYILLS 335



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 17/299 (5%)

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           V  SL+ MY R G    ARK FD +  ++  S+NA++ GY ++  + EA  + +E+   G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 184
           + +   T AS+L   A    +  G  IH  ++K G + N  + N LI+MY++ G +  A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           +VF++M +R+V+SW S+I  + +      A   F  M + G +P+ +T V++ S  + + 
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 245 DCRNSR-------SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-KD 296
                +         HG + R   +         +VD+  + G++  A      +P+  D
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYA-------CMVDLLGRSGLLVEAMEFINSMPLMAD 293

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
            + W TL+     +G         +M+ E    +P    Y+ +   ++  G  +  +KI
Sbjct: 294 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP--AAYILLSNLHASAGQWKDVVKI 350



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 118/271 (43%), Gaps = 36/271 (13%)

Query: 1   MISVYVRCGRLSEA---VDCFYQFTLTS---------------------------GLRPD 30
           +IS+Y R GR+ +A    D  ++  L S                           G+   
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 31  FYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
            +TF  +L    +   +  G++IH  +LK G++ +  +  +L+ MY R G    A ++F+
Sbjct: 125 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 184

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
           +M  R+  SW +MI+G+ + G A  AL++  +M   G   + IT  ++L  C+    I  
Sbjct: 185 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 244

Query: 148 GLLIHLYIVK-HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAY 205
           G      + K HG+   +     ++++  + G++  A+   + M +  D + W +++ A 
Sbjct: 245 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304

Query: 206 E-QSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
               N  +  H     ++Q    P    L+S
Sbjct: 305 RVHGNTELGRHAAEMILEQEPDDPAAYILLS 335


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 352/647 (54%), Gaps = 14/647 (2%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV++   ++  Y R    + A +LF +MPV+D  SWN+MI G     +   A  + DEM 
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP 84

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
              V      +   L        +  GL   +         ++   N++I  Y   G + 
Sbjct: 85  ERSVVSWTTMINGFLQF--GKIEVAEGLFYKMPFR------DIAAWNSMIYGYCCNGRVE 136

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ--PDLLTLVSLTSI 239
             LR+F +M  R+V+SW S+I   +Q      A G F  M   G++  P   T   + + 
Sbjct: 137 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 196

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS 299
            A  +       +H  + + G+   D  I  A++  YA    +  +  VF G    +V+ 
Sbjct: 197 CANASALYQGVQIHAHVFKLGYSF-DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVI 255

Query: 300 WNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           W  L+TGY  N    +A++VF +MM E   + PNQ ++ S L +   + AL  G +IH  
Sbjct: 256 WTALVTGYGLNCKHEDALKVFGEMMRE--GVLPNQSSFTSALNSCCGLEALDWGREIHTA 313

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  L  DVFV   L+ MY +CG ++D + +F ++ + + V WN++I     HG G  A
Sbjct: 314 AVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWA 373

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           L FF QM+   V PD ITF  LL+ACSHSG+  +G+  F    E    +  L HY CMVD
Sbjct: 374 LAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVD 433

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           + GR+G L  A   I+NMPV+ ++ +W  LL AC +H  +E+   A+  + +++      
Sbjct: 434 ILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSA 493

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SN+YA+  +W  V  +R   + RG+ K PG S I +    + F +G+R+HP  ++I
Sbjct: 494 YVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRI 553

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQI 658
           Y +L  L  K+K LGYVPD+ F L DVE+++KE +L+ HSERLAI FG+IS+   S I +
Sbjct: 554 YQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITV 613

Query: 659 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            KNLRVCGDCH+  K I++I  R+IIVRDS RFHHF DG CSCGDYW
Sbjct: 614 MKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 216/467 (46%), Gaps = 53/467 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ Y R  R   A+  FY+  +      D  ++  ++K C +  D    +K+   +   
Sbjct: 32  MITGYARNYRFDHALQLFYEMPV-----KDVVSWNSMIKGCFDCADLTMARKLFDEMP-- 84

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC------------ 105
             E  V    ++++ + +FG   VA  LF  MP RD  +WN+MI GYC            
Sbjct: 85  --ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLF 142

Query: 106 -------------------QSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDN 144
                              Q G + EAL +  +M   GV + P   T   ++  CA +  
Sbjct: 143 QEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASA 202

Query: 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
           +  G+ IH ++ K G  F+ ++S  LI  YA    M  +LRVF   +  +VV W +++  
Sbjct: 203 LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTG 262

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y  +     A   F  M + G+ P+  +  S  +    L      R +H   ++ G    
Sbjct: 263 YGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG-LET 321

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV +GN+++ MY + G +N    +F+ +  K+++SWN++I G AQ+G    A+  F  M 
Sbjct: 322 DVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMV 381

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC---LCFDVFVATCLVDMYGKC 381
             + + P++ T+  +L A SH G  ++G  +     +N    +  D +   C+VD+ G+ 
Sbjct: 382 R-SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY--ACMVDILGRS 438

Query: 382 GRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           G++++A  L   +P +++S+ W  ++S   +H + + A    + ++D
Sbjct: 439 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIID 485



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 30/199 (15%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME---------------EC 326
           I+ A  VF+ +   DV  +  +ITGYA+N     A+++F  M                +C
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDC 70

Query: 327 NEINPNQGTYVSILPAYSHV-------GALRQG-IKIHARVIKNCLCFDVFVATCLVDMY 378
            ++   +  +   +P  S V       G L+ G I++   +       D+     ++  Y
Sbjct: 71  ADLTMARKLFDE-MPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI--Y 127

Query: 379 GKC--GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPDH 434
           G C  GR++D + LF ++P  + + W ++I     HG+ ++AL  FRQM+  G  V+P  
Sbjct: 128 GYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTS 187

Query: 435 ITFVSLLTACSHSGLVSEG 453
            T+  ++TAC+++  + +G
Sbjct: 188 STYCCVITACANASALYQG 206


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/670 (35%), Positives = 372/670 (55%), Gaps = 40/670 (5%)

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
           W+  VA    ++  R      ARKLFD+MP R+  SWN ++SGY ++G   EA  + D M
Sbjct: 51  WNSMVAGYFANLMPRD-----ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLM 105

Query: 121 RLEGVSM-----------DPITVASILPVCARSDNILSGLLIHLYIVKHGL--------- 160
               V               + VA  L       N +S  ++ +  ++ G          
Sbjct: 106 PERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYE 165

Query: 161 ---EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
              + +     ++I+   K G +  A  +FD+M ER V++W +++  Y Q+N    A   
Sbjct: 166 MIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKI 225

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           F  M +        T VS TS++  +   +N R      +     ++ VI  NA++    
Sbjct: 226 FDVMPEK-------TEVSWTSML--MGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLG 276

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           + G I  A  VF+ +  ++  SW T+I  + +NG   EA+++F +M++   + P   T +
Sbjct: 277 QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQK-QGVRPTFPTLI 335

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           SIL   + + +L  G ++HA++++     DV+VA+ L+ MY KCG +  +  +F + P  
Sbjct: 336 SILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK 395

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456
             + WN+IIS +  HG G++AL  F +M L    +P+ +TFV+ L+ACS++G+V EG + 
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKI 455

Query: 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           +  M+  FG+KP   HY CMVD+ GRAG    A   I +M V PDA++WG+LLGACR H 
Sbjct: 456 YESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHS 515

Query: 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSI 576
            +++    + +L E++ EN G Y+L+SN+YA+ G+W  V E+R L + R ++K+PG S  
Sbjct: 516 QLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWT 575

Query: 577 EVNNKVDIFYTGN-RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILT 635
           EV NKV  F  G   +HP+ E I   L  L   ++  GY PD S+ L DV+E+EK + L 
Sbjct: 576 EVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLK 635

Query: 636 SHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 695
            HSERLA+A+ ++      PI++ KNLRVC DCH   K IS++ EREII+RD+NRFHHF+
Sbjct: 636 YHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFR 695

Query: 696 DGICSCGDYW 705
           +G CSC DYW
Sbjct: 696 NGECSCKDYW 705



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 188/371 (50%), Gaps = 15/371 (4%)

Query: 52  CSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
           C + ++  + D     S++H  C+ G  + AR++FD+M  R   +W  M++GY Q+    
Sbjct: 161 CKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVD 220

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFNLFVSNNL 170
           +A  I D M         ++  S+L    ++  I     L  +  VK      +   N +
Sbjct: 221 DARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVK-----PVIACNAM 271

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+   + G +  A RVFD M ER+  SW ++I  +E++   + A   F  MQ+ G++P  
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL+S+ S+ A L    + + VH  ++ R  F  DV + + ++ MY K G +  +  +F+
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLV-RCQFDVDVYVASVLMTMYIKCGELVKSKLIFD 390

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
             P KD+I WN++I+GYA +GL  EA++VF  M       PN+ T+V+ L A S+ G + 
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 351 QGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIIS 407
           +G+KI+   +++        A   C+VDM G+ GR ++AM +   +     +  W +++ 
Sbjct: 451 EGLKIYES-MESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLG 509

Query: 408 CHGIHGQGDKA 418
               H Q D A
Sbjct: 510 ACRTHSQLDVA 520



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 184/443 (41%), Gaps = 61/443 (13%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G  + ARKLFD    +   SWN+M++GY  +    +A  + DEM              
Sbjct: 29  RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP------------- 75

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
                                     + N+   N L++ Y K G +  A +VFD M ER+
Sbjct: 76  --------------------------DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERN 109

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VVSW +++  Y  +     A   F  M      P+   +     ++  L D R   +   
Sbjct: 110 VVSWTALVKGYVHNGKVDVAESLFWKM------PEKNKVSWTVMLIGFLQDGRIDDACKL 163

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           + M      +D I   +++    K G ++ A  +F+ +  + VI+W T++TGY QN    
Sbjct: 164 YEMIPD---KDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVD 220

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           +A ++F +M E  E+     ++ S+L  Y   G +         + +      V     +
Sbjct: 221 DARKIFDVMPEKTEV-----SWTSMLMGYVQNGRIEDA----EELFEVMPVKPVIACNAM 271

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +   G+ G I  A  +F  +   +   W  +I  H  +G   +AL+ F  M  +GVRP  
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331

Query: 435 ITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493
            T +S+L+ C+    +  G Q +  +++ +F +  ++     ++ ++ + G L  +    
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA--SVLMTMYIKCGELVKSKLIF 389

Query: 494 QNMPVRPDASIWGALLGACRIHG 516
              P + D  +W +++     HG
Sbjct: 390 DRFPSK-DIIMWNSIISGYASHG 411



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 145/350 (41%), Gaps = 62/350 (17%)

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
            +N  I   ++ G +  A ++FD    + + SWNS++A Y  +  P  A   F  M    
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM---- 74

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
             PD                                   ++I  N +V  Y K G I+ A
Sbjct: 75  --PD----------------------------------RNIISWNGLVSGYMKNGEIDEA 98

Query: 286 CAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345
             VF+ +P ++V+SW  L+ GY  NG    A  +F  M E N++     ++  +L  +  
Sbjct: 99  RKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV-----SWTVMLIGFLQ 153

Query: 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 405
            G +    K++  +       D    T ++    K GR+D+A  +F ++   S + W  +
Sbjct: 154 DGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTM 209

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ++ +G + + D A   F  M ++      +++ S+L     +G + + +  F +M     
Sbjct: 210 VTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELFEVMP---- 261

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515
           +KP +     M+   G+ G +  A     +M  R DAS W  ++   +IH
Sbjct: 262 VKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVI---KIH 306



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I ++ R G   EA+D F       G+RP F T   +L  C +L     GK++H  +++ 
Sbjct: 302 VIKIHERNGFELEALDLFI-LMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRC 360

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ DV+VA+ L+ MY + G    ++ +FD  P +D   WN++ISGY   G   EAL + 
Sbjct: 361 QFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVF 420

Query: 118 DEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYA 175
            EM L G +  + +T  + L  C+ +  +  GL I+  +    G++        +++M  
Sbjct: 421 CEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLG 480

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G    A+ + D M +E D   W S++ A
Sbjct: 481 RAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 23/263 (8%)

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N  +   +++G I+ A  +F+    K + SWN+++ GY  N +  +A ++F  M + N 
Sbjct: 20  ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI 79

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           I+ N      ++  Y   G + +  K+   + +     +V   T LV  Y   G++D A 
Sbjct: 80  ISWN-----GLVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVAE 130

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           SLF+++P  + V W  ++      G+ D A   +  + D+    D+I   S++      G
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEG 186

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            V E +  F  M E   I      +  MV  +G+   +  A      MP + + S W ++
Sbjct: 187 RVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSM 240

Query: 509 LGACRIHGNMELGAVASDRLFEV 531
           L     +G +E     ++ LFEV
Sbjct: 241 LMGYVQNGRIE----DAEELFEV 259


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/651 (35%), Positives = 384/651 (58%), Gaps = 9/651 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y   G+  E ++ F +  +T G  P+ YT    L AC        GK+IH SVLK 
Sbjct: 218 ILSSYSTSGKSLETLELFREMHMT-GPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKS 276

Query: 58  G-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
                +++V  +L+ MY R G    A ++   M   D  +WN++I GY Q+    EAL+ 
Sbjct: 277 STHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEF 336

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             +M   G   D +++ SI+    R  N+L+G+ +H Y++KHG + NL V N LI+MY+K
Sbjct: 337 FSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 396

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
             +  +  R F +M ++D++SW ++IA Y Q++  + A   F  + +  ++ D + L S+
Sbjct: 397 CNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSI 456

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
               + L      + +H  I+R+G    D +I N +VD+Y K   +  A  VFE +  KD
Sbjct: 457 LRASSVLKSMLIVKEIHCHILRKGLL--DTVIQNELVDVYGKCRNMGYATRVFESIKGKD 514

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           V+SW ++I+  A NG  SEA+E+F+ M E   ++ +    + IL A + + AL +G +IH
Sbjct: 515 VVSWTSMISSSALNGNESEAVELFRRMVETG-LSADSVALLCILSAAASLSALNKGREIH 573

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +++   C +  +A  +VDMY  CG +  A ++F ++ R   + + ++I+ +G+HG G 
Sbjct: 574 CYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGK 633

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
            A+  F +M  E V PDHI+F++LL ACSH+GL+ EG+ +  +M+ E+ ++P  +HY C+
Sbjct: 634 AAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCL 693

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VD+ GRA  +  A  F++ M   P A +W ALL ACR H   E+G +A+ RL E++ +N 
Sbjct: 694 VDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNP 753

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           G  VL+SN++A  G+W  V++VR+  +  G++K PG S IE++ KV  F   +++HP+ +
Sbjct: 754 GNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESK 813

Query: 597 KIYDELRNLTAKM-KSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
           +IY++L  +T K+ + +GYV D  FVL +V+E EK  +L  HSER+AIA+G
Sbjct: 814 EIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYG 864



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 153/542 (28%), Positives = 279/542 (51%), Gaps = 16/542 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  YV  G  + A+  ++   +  G+     +FP +LKAC  L D   G ++H  ++KL
Sbjct: 116 MIGAYVSNGEPASALALYWNMRV-EGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKL 174

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 116
           G+    F+  +L+ MY +    + AR+LFD    + D+  WN+++S Y  SG ++E L++
Sbjct: 175 GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLEL 234

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN-LFVSNNLINMYA 175
             EM + G + +  T+ S L  C        G  IH  ++K     + L+V N LI MY 
Sbjct: 235 FREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYT 294

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           + G M  A R+  QM   DVV+WNS+I  Y Q+     A  FF+ M  AG + D +++ S
Sbjct: 295 RCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTS 354

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + +   +L++      +H ++++ GW   ++ +GN ++DMY+K  +       F  +  K
Sbjct: 355 IIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 413

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D+ISW T+I GYAQN    EA+E+F+ + +   +  ++    SIL A S + ++    +I
Sbjct: 414 DLISWTTVIAGYAQNDCHVEALELFRDVAK-KRMEIDEMILGSILRASSVLKSMLIVKEI 472

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
           H  +++  L  D  +   LVD+YGKC  +  A  +F  +     V W ++IS   ++G  
Sbjct: 473 HCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNE 531

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYG 474
            +A+  FR+M++ G+  D +  + +L+A +    +++G+  + +++++ F ++  +    
Sbjct: 532 SEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA--V 589

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
            +VD++   G L  A      +  R     + +++ A  +HG    G  A +   ++  E
Sbjct: 590 AVVDMYACCGDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHG---CGKAAVELFDKMRHE 645

Query: 535 NV 536
           NV
Sbjct: 646 NV 647



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 221/437 (50%), Gaps = 9/437 (2%)

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
           K+FD+MP R + +WN MI  Y  +G    AL +   MR+EGV +   +  ++L  CA+  
Sbjct: 100 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLR 159

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSII 202
           +I SG  +H  +VK G     F+ N L++MYAK   +  A R+FD   E+ D V WNSI+
Sbjct: 160 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 219

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           ++Y  S   +     F  M   G  P+  T+VS  +     +  +  + +H  +++    
Sbjct: 220 SSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH 279

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
             ++ + NA++ MY + G +  A  +   +   DV++WN+LI GY QN +  EA+E F  
Sbjct: 280 SSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSD 339

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M        ++ +  SI+ A   +  L  G+++HA VIK+    ++ V   L+DMY KC 
Sbjct: 340 MIAAGH-KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 398

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
                   F ++     + W  +I+ +  +    +AL  FR +  + +  D +   S+L 
Sbjct: 399 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 458

Query: 443 ACS--HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           A S   S L+ + + + H++++   +   +++   +VD++G+  ++G A    +++  + 
Sbjct: 459 ASSVLKSMLIVK-EIHCHILRKGL-LDTVIQNE--LVDVYGKCRNMGYATRVFESIKGK- 513

Query: 501 DASIWGALLGACRIHGN 517
           D   W +++ +  ++GN
Sbjct: 514 DVVSWTSMISSSALNGN 530


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/659 (37%), Positives = 373/659 (56%), Gaps = 81/659 (12%)

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARSDNILSGLLIH 152
           S SWN+++S Y       +A+ +  EM +  G+  D + V +ILPV        SG L  
Sbjct: 23  SVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPV--------SGFL-- 72

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
                       FV N L++MYAK G M  A +VF++M  +DVV+WN+++  Y Q+    
Sbjct: 73  ----------GFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122

Query: 213 TAHGFFTTMQQAGIQ-----------------------------------PDLLTLVSLT 237
            A   F  M++  I+                                   P+++TL+SL 
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLL 182

Query: 238 SIVAQLNDCRNSRSVHGFIMR---RGWF---MEDVIIGNAVVDMYAKLGIINSACAVFEG 291
           S  A +    + +  H + ++   +G      +D+ + NA++DMYAK   +  A A+F+ 
Sbjct: 183 SACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDE 242

Query: 292 LPVKD--VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGA 348
           +  KD  V++W  +I GYAQ+G A+ A+++F +M +  N I PN  T   +L A + + A
Sbjct: 243 ICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAA 302

Query: 349 LRQGIKIHARVIKNC-LCFDV-FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           L+ G +IHA V++   +  DV FVA CL+DMY K G +D A  +F  + + ++V W +++
Sbjct: 303 LKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLL 362

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           + +G+HG                +  D ITF+ +L ACSHSG+V  G   F+ M ++F +
Sbjct: 363 TGYGMHGAA--------------LVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVV 408

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
            P ++HY CM DLFGRAG L  A   I +M + P   +W ALL ACR H N EL   A+ 
Sbjct: 409 DPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAK 468

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           +L E+ ++N G Y L+SNIYAN  +W+ V  +R L +  G+KK PGWS ++    ++ FY
Sbjct: 469 KLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFY 528

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            G+RTH + +KIY+ L +L  ++K++GYVP  +F L DV+++EK   L  HSE+LA+A+ 
Sbjct: 529 VGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYA 588

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++ PP +PI+I KNLR+CGD H+   +IS I E EII+RDS+RFH FK+G CSC  YW
Sbjct: 589 ILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 221/477 (46%), Gaps = 83/477 (17%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           ++SVY  C   ++AV  F + T+  G+ PD      +L      V G         LGF 
Sbjct: 29  IVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILP-----VSGF--------LGF- 74

Query: 61  WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM 120
              FV  +L+ MY + G    A K+F+ M  +D  +WNAM++GY Q+G   +AL +  +M
Sbjct: 75  ---FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKM 131

Query: 121 RLEGVSMD-----------------------------------PITVASILPVCARSDNI 145
           R E + +D                                    +T+ S+L  CA    +
Sbjct: 132 REEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGAL 191

Query: 146 LSGLLIHLYIVKHGLEF-------NLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVV 196
           L G   H Y VK  L+        +L V N LI+MYAK   +  A  +FD++   +RDVV
Sbjct: 192 LHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVV 251

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           +W  +I  Y Q  D   A   F+ M +    I P+  T+  +    A+L   +  + +H 
Sbjct: 252 TWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHA 311

Query: 255 FIMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313
           +++RR     DV+ + N ++DMY+K G +++A  VF+ +  ++ +SW +L+TGY  +G A
Sbjct: 312 YVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGAA 371

Query: 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-- 371
                          +  +  T++ +L A SH G + +GI +  R+ K+    D  V   
Sbjct: 372 ---------------LVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKD-FVVDPGVEHY 415

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
            C+ D++G+ GR+ +A  L   +    + V W A++S    H   + A    +++L+
Sbjct: 416 ACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLE 472


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/663 (35%), Positives = 371/663 (55%), Gaps = 6/663 (0%)

Query: 43  NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMIS 102
           +L  GK +H  ++     +DV +  +L+  Y + G   +AR +FD MP R++ S N ++S
Sbjct: 26  DLSKGKALHARLITAA-HFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMS 84

Query: 103 GYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           GY  SG   E+L +L   R+    M+   +++ +   A   +   G   H Y VK G   
Sbjct: 85  GYASSGRHKESLQLL---RVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAE 141

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
             +V N ++ MY +   M  A +VF+ +   D  ++NS+I  Y        + G    M 
Sbjct: 142 QRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMT 201

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
               + D ++ V++    A + D      VH   +++   + +V +G+A+VDMY K   +
Sbjct: 202 GEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLEL-NVYVGSALVDMYGKCDHV 260

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
           + A   FE LP K+V+SW  ++T Y QN L  +A+++F  ME    + PN+ TY   L +
Sbjct: 261 HDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDME-MEGVQPNEFTYAVALNS 319

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + + ALR G  + A V+K      + V+  L++MY K G I+DA  +F  +P    V W
Sbjct: 320 CAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSW 379

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           N II+ +  HG   + +  F  ML   V P ++TFV +L+AC+  GLV E   Y + M +
Sbjct: 380 NLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMK 439

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           E GI P  +HY CMV L  R G L  A  FI N  +  D   W +LL +C+++ N  LG 
Sbjct: 440 EVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGH 499

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             ++++ +++  +VG YVL+SN+YA   +W+GV +VR   R+R ++K+PG S I V + V
Sbjct: 500 RVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDV 559

Query: 583 DIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLA 642
            +F +  + HP+ ++I  +L  L  ++K++GYVP+ + VL D++++ KE  L  HSE+LA
Sbjct: 560 HVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLA 619

Query: 643 IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCG 702
           +AFG+I +P  + I I KNLR+C DCH   K IS +T R+I+VRD+ RFH  + GICSC 
Sbjct: 620 LAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCN 679

Query: 703 DYW 705
           DYW
Sbjct: 680 DYW 682


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/559 (42%), Positives = 339/559 (60%), Gaps = 49/559 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H  +VK GL+    V N LI  YA  G++  A RVFD M  RD VS+NS+I A+  S D
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
            ++A   F  +          T V+ TS+VA L  CR                       
Sbjct: 91  VVSARRLFERVPSP-------TPVTWTSMVAGL--CRA---------------------- 119

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEI 329
                    G + +A  +FE +PV+D++SWN +++G A N    EA+ +F+ MM E    
Sbjct: 120 ---------GDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAE--GF 168

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVFVATCLVDMYGKCGRIDDA 387
            PN+GT +S L A +  GAL  G  IHA V +  L   +D F+ T L+DMY KCG ++ A
Sbjct: 169 APNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELA 228

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSH 446
           + +F ++   ++  WNA+I+   ++G   KAL+ FR+M LD  V PD +TFV +L ACSH
Sbjct: 229 LDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSH 288

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            G V  G+ +FHM+++++GI+  L+HY CMVDL  R+GHL  AH  I  MP++PDA +W 
Sbjct: 289 GGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWR 348

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALLG CR+H ++++   A   + E+++   G +VL+SN+YA VG+W GV++VR   R +G
Sbjct: 349 ALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKG 405

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           ++K PG SSIE+N+ +  F +G+++HP Y  I+ +L  ++A+M+  GYV + + V  DVE
Sbjct: 406 IEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYDVE 465

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  L  HSE+LAIAFG+I  PP   I+I KNLR C DCH + K +SQI   EI+VR
Sbjct: 466 EEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIVVR 525

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D  RFHHF +G CSC D+W
Sbjct: 526 DRARFHHFTEGACSCNDFW 544



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 191/410 (46%), Gaps = 45/410 (10%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
           +H  ++KLG +    V  +L+  Y   GL + AR++FD M  RD+ S+N+MI  +  SG+
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
            V A  + + +     S  P+T  S++    R+ ++ +                      
Sbjct: 91  VVSARRLFERV----PSPTPVTWTSMVAGLCRAGDVAA---------------------- 124

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
                        A R+F++M  RD+VSWN++++    +  P+ A   F  M   G  P+
Sbjct: 125 -------------ARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPN 171

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME-DVIIGNAVVDMYAKLGIINSACAV 288
             T++S  +  A        + +H F+ R+  F   D  +G A++DMYAK G +  A  V
Sbjct: 172 RGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDV 231

Query: 289 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348
           F  L  ++  +WN +I G A NG +++A+++F+ ME    + P++ T+V +L A SH G 
Sbjct: 232 FTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGF 291

Query: 349 LRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAI 405
           +  G + H  +I+      + +    C+VD+  + G + +A  +   +P +  +V W A+
Sbjct: 292 VDVG-REHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRAL 350

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
           +    +H     A     +M +     DH+   +L  A      V + +R
Sbjct: 351 LGGCRLHKDVKMAETAISEM-EATCSGDHVLLSNLYAAVGRWSGVEDVRR 399



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 47  GKKIHCSV--LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           GK IH  V   +L   WD F+  +LL MY + G   +A  +F  +  R++ +WNAMI+G 
Sbjct: 191 GKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGL 250

Query: 105 CQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDNILSGLL-IHLYIVKHGLEF 162
             +G + +ALD+  +M L+  V  D +T   +L  C+    +  G    H+   K+G+  
Sbjct: 251 AMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRL 310

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            L     ++++ A+ G ++ A ++   M M+ D V W +++       D   A    + M
Sbjct: 311 ILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETAISEM 370

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +A    D + L +L + V + +   + R
Sbjct: 371 -EATCSGDHVLLSNLYAAVGRWSGVEDVR 398


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 334/558 (59%), Gaps = 26/558 (4%)

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E N    N L++ Y + GM+  A +VFD+M ER+VVSW ++I  Y Q      A   F  
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWR 81

Query: 221 MQQAGIQPDLLTLVSLTSIVAQL-NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 279
           M +  +       VS T ++  L  D R   +   F M     ++DV+    ++D     
Sbjct: 82  MPERNV-------VSWTVMLGGLIEDGRVDEARQLFDMMP---VKDVVASTNMIDGLCSE 131

Query: 280 GIINSACAVFEGLPVKDVISWNTLITG-------------YAQNGLASEAIEVFQMMEEC 326
           G +  A  +F+ +P ++V++W ++I+G             Y + G   EA+ +F +M+  
Sbjct: 132 GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQR- 190

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             + P+  + +S+L     + +L  G ++H++++++    D++V++ L+ MY KCG +  
Sbjct: 191 EGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVT 250

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F +      V WN+II+ +  HG G+KAL  F  M    + PD ITF+ +L+ACS+
Sbjct: 251 AKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSY 310

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +G V EG   F  M+ ++ + P  +HY CMVDL GRAG L  A N I+NMPV  DA +WG
Sbjct: 311 TGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 370

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALLGACR H N++L  +A+ +L +++  N G Y+L+SN+Y++  +W+ V E+R   R + 
Sbjct: 371 ALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKN 430

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRT-HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDV 625
           L+K+PG S IEV+ KV IF  G  T HP++E I  +L  L A ++  GY PD SFV+ DV
Sbjct: 431 LRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDV 490

Query: 626 EEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV 685
           +E+EK H L  HSE+LA+A+G++  P   PI++ KNLRVCGD H+  K I+Q+T REII+
Sbjct: 491 DEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIIL 550

Query: 686 RDSNRFHHFKDGICSCGD 703
           RD+NRFHHFKDG+CSC D
Sbjct: 551 RDTNRFHHFKDGLCSCSD 568



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 193/374 (51%), Gaps = 27/374 (7%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L+  Y + G+ + ARK+FD MP R+  SW AMI GY Q G   EA  +   M    V   
Sbjct: 31  LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSW 90

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
            + +  ++    R D   +  L  +  VK     ++  S N+I+     G +  A  +FD
Sbjct: 91  TVMLGGLIE-DGRVDE--ARQLFDMMPVK-----DVVASTNMIDGLCSEGRLIEAREIFD 142

Query: 189 QMMERDVVSWNSIIAA-------------YEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           +M +R+VV+W S+I+              YE+    + A   F+ MQ+ G++P   +++S
Sbjct: 143 EMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVIS 202

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S+   L    + R VH  ++ R  F  D+ + + ++ MY K G + +A  VF+    K
Sbjct: 203 VLSVCGSLASLDHGRQVHSQLV-RSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK 261

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           D++ WN++I GYAQ+G   +A+EVF  M   + I P++ T++ +L A S+ G +++G++I
Sbjct: 262 DIVMWNSIIAGYAQHGFGEKALEVFHDM-FSSSIAPDEITFIGVLSACSYTGKVKEGLEI 320

Query: 356 HARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
               +K+    D       C+VD+ G+ G++++AM+L   +P  + ++ W A++     H
Sbjct: 321 FES-MKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTH 379

Query: 413 GQGDKALNFFRQML 426
              D A    +++L
Sbjct: 380 KNLDLAEIAAKKLL 393



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVR-------------DSGSWNAMISGYCQSG 108
           DV  + +++   C  G    AR++FD+MP R             D G+W+ MI  Y + G
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
             +EAL +   M+ EGV     +V S+L VC    ++  G  +H  +V+   + +++VS+
Sbjct: 177 FELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSS 236

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            LI MY K G +  A RVFD+   +D+V WNSIIA Y Q      A   F  M  + I P
Sbjct: 237 VLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAP 296

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D +T + + S  +     +    +   +  +            +VD+  + G +N A  +
Sbjct: 297 DEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNL 356

Query: 289 FEGLPVK-DVISWNTLI 304
            E +PV+ D I W  L+
Sbjct: 357 IENMPVEADAIVWGALL 373



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI +Y R G   EA+   +      G+RP F +   VL  C +L     G+++H  +++ 
Sbjct: 168 MIKIYERKGFELEAL-ALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRS 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ D++V++ L+ MY + G    A+++FD    +D   WN++I+GY Q G   +AL++ 
Sbjct: 227 QFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVF 286

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI-VKHGLEFNLFVSNNLINMYAK 176
            +M    ++ D IT   +L  C+ +  +  GL I   +  K+ ++        ++++  +
Sbjct: 287 HDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGR 346

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A+ + + M +E D + W +++ A
Sbjct: 347 AGKLNEAMNLIENMPVEADAIVWGALLGA 375



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 49/273 (17%)

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  +F+ +P  + ISWN L++GY QNG+ SEA +VF  M E N +     ++ +++  Y 
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVV-----SWTAMIRGYV 67

Query: 345 HVGALRQ---------------------GIKIHARVIKNCLCF------DVFVATCLVDM 377
             G + +                     G+    RV +    F      DV  +T ++D 
Sbjct: 68  QEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDG 127

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD-------------KALNFFRQ 424
               GR+ +A  +F ++P+ + V W ++IS     G                +AL  F  
Sbjct: 128 LCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSL 187

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           M  EGVRP   + +S+L+ C     +  G Q +  +++ +F I  ++     ++ ++ + 
Sbjct: 188 MQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS--SVLITMYIKC 245

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           G L  A         + D  +W +++     HG
Sbjct: 246 GDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQHG 277


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/709 (34%), Positives = 383/709 (54%), Gaps = 20/709 (2%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVL--KLGFEWDV 63
           G L EA+  FY  T    L    +T+  + +AC    +L +G+ +H  +       ++++
Sbjct: 41  GHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFNL 100

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           F+   +++MY + G  + A ++FD+MP ++  SW A++SGY Q G + E   +   M + 
Sbjct: 101 FLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIW 160

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK-FGMMRH 182
               +    AS++  C   DN   G  +H   +K   +  ++V N LI MY K  G    
Sbjct: 161 HQPTE-FAFASVISACGGDDN--CGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADE 217

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A  V++ M  R++VSWNS+IA ++       A   F+ M   GI+ D  TLVS+ S +  
Sbjct: 218 AWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCG 277

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC-AVFEGLPVK-DVISW 300
           + D          +  +  F+  + +  A+V  Y+ LG   S C  +F  L  + DV+SW
Sbjct: 278 MGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSW 337

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
             +I  +A+       +   Q + EC  + P++  +  +L A + +   R  + + + V+
Sbjct: 338 TGIIAAFAERDPKKALVIFRQFLREC--LAPDRHMFSIVLKACAGLATERHALTVQSHVL 395

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           K     D+ +A  L+    +CG +  +  +F ++    +V WN+++  + +HGQG +AL 
Sbjct: 396 KVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALL 455

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F QM     +PD  TFV+LL+ACSH+G+  EG + F  M    GI P L HY CMVD+ 
Sbjct: 456 LFSQM---DAQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDIL 512

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG +  A   I  MP+ PD+ +W ALLG+CR HG  +L  +A+ +L E+D  N   YV
Sbjct: 513 GRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYV 572

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           LMSNI+   G++     +R     + ++K PG S IEV N+V  F +G + HP+ E I  
Sbjct: 573 LMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICA 632

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS----SPPKSPI 656
            L  L  ++K LGYVP  S  L D+E++ KE  L  HSE+LA+AF +++        + I
Sbjct: 633 RLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNVGSICCSGNTI 692

Query: 657 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I KN+R+C DCHN+ K  S++ + EI+VRDSNRFHHFK  +CSC DYW
Sbjct: 693 KIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW 741


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 334/557 (59%), Gaps = 3/557 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H +I+K GL ++ F  +NL+   A  ++G M +A  +F Q+ E     +N++I     S
Sbjct: 50  VHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNS 109

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            D   A   +  M + GI+PD  T   +    + L   +    +H  + + G  + DV +
Sbjct: 110 MDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEV-DVFV 168

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N ++ MY K G I  A  VFE +  K V SW+++I  +A   +  E + +   M     
Sbjct: 169 QNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGR 228

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
               +   VS L A +H+G+   G  IH  +++N    +V V T L+DMY KCG ++  +
Sbjct: 229 HRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGL 288

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  +   +   +  +I+   IHG+G +A+  F  ML+EG+ PD + +V +L+ACSH+G
Sbjct: 289 CVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAG 348

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV+EG + F+ MQ E  IKP ++HYGCMVDL GRAG L  A++ I++MP++P+  +W +L
Sbjct: 349 LVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSL 408

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC++H N+E+G +A++ +F ++  N G Y++++N+YA   KW  V  +R+   ++ L 
Sbjct: 409 LSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLV 468

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           +TPG+S +E N  V  F + +++ P  E IYD ++ +  ++K  GY PD S VL DV+ED
Sbjct: 469 QTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDED 528

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK   L  HS++LAIAF +I +   SPI+I +NLR+C DCH +TKFIS I EREI VRD 
Sbjct: 529 EKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDR 588

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 589 NRFHHFKDGTCSCKDYW 605



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 199/397 (50%), Gaps = 13/397 (3%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLH--MYCRFGLANVARKLFDDMPVRDS 94
           +LK C+++ + K++H  +LKLG  +D F  ++L+      R+G    A  +F  +    S
Sbjct: 37  LLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGS 96

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N MI G   S +  EAL +  EM   G+  D  T   +L  C+    +  G+ IH +
Sbjct: 97  FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAH 156

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           + K GLE ++FV N LI+MY K G + HA  VF+QM E+ V SW+SII A+         
Sbjct: 157 VFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216

Query: 215 HGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
                 M   G  + +   LVS  S    L      R +HG ++R    + +V++  +++
Sbjct: 217 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISEL-NVVVKTSLI 275

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPN 332
           DMY K G +     VF+ +  K+  S+  +I G A +G   EA+ VF  M+EE   + P+
Sbjct: 276 DMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEE--GLTPD 333

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
              YV +L A SH G + +G++   R+  ++ +   +    C+VD+ G+ G + +A  L 
Sbjct: 334 DVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLI 393

Query: 392 YQVP-RSSSVPWNAIISCHGIHGQGD----KALNFFR 423
             +P + + V W +++S   +H   +     A N FR
Sbjct: 394 KSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFR 430



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI   V    L EA+   Y   L  G+ PD +T+P VLKAC  LV   +G +IH  V K 
Sbjct: 102 MIRGNVNSMDLEEAL-LLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKA 160

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV   L+ MY + G    A  +F+ M  +   SW+++I  +       E L +L
Sbjct: 161 GLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLL 220

Query: 118 DEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M  EG    +   + S L  C    +   G  IH  ++++  E N+ V  +LI+MY K
Sbjct: 221 GDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVK 280

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +   L VF  M  ++  S+  +IA          A   F+ M + G+ PD +  V +
Sbjct: 281 CGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGV 340

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S  +              +         +     +VD+  + G++  A  + + +P+K 
Sbjct: 341 LSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKP 400

Query: 296 -DVISWNTLITG 306
            DV+ W +L++ 
Sbjct: 401 NDVV-WRSLLSA 411


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/630 (36%), Positives = 357/630 (56%), Gaps = 45/630 (7%)

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
           + A  +F    +++S  +NA+I G  ++     ++     M    +S D +T   +L   
Sbjct: 91  DYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSA 150

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER----DV 195
           A   N   G  +H  I+K GLEF+ FV  +L++MY K   +  AL+VFD+  E      V
Sbjct: 151 AALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSV 210

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           + WN +I  Y +  D + A   F +M +                                
Sbjct: 211 LIWNVLIHGYCRMGDLVKATELFDSMPK-------------------------------- 238

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
                   +D    N++++ + K+G +  A  +F  +P K+V+SW T++ G++QNG   +
Sbjct: 239 --------KDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEK 290

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+E F  M E     PN  T VS L A + +GAL  G++IH  +  N    ++ + T LV
Sbjct: 291 ALETFFCMLE-EGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALV 349

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           DMY KCG I+ A  +F++      + W+ +I    IHG   KAL +F  M   G +PD +
Sbjct: 350 DMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSV 409

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
            F+++L ACSHSG V+EG ++F  M+  + I+P +KHY  +VD+ GRAG L  A  FI+ 
Sbjct: 410 VFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRA 469

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MP+ PD  +WGAL  ACR H N+E+  +AS +L +++ ++ G YV +SN YA+VG+W+  
Sbjct: 470 MPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDA 529

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
           + VR   RD G  K PGWS IEV++K+  F  G+ TH +  +IY +L  ++A  +  GY 
Sbjct: 530 ERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYT 589

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
            +   VL ++EE+EKE  L  HSE+LA+AFGI+S+ P + ++I KNLRVC DCH++ K+ 
Sbjct: 590 KEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYA 649

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S++++REII+RD  RFHHF DG+CSCGDYW
Sbjct: 650 SKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 177/411 (43%), Gaps = 84/411 (20%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG---KKIHCSVLKLGFEWDVFVAASL 69
           E+   F+   L   + PD  TFP VLK+   L +G   + +HC +LK G E+D FV  SL
Sbjct: 122 ESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSL 181

Query: 70  -----------------------------------LHMYCRFGLANVARKLFDDMPVRDS 94
                                              +H YCR G    A +LFD MP +D+
Sbjct: 182 VDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDT 241

Query: 95  GSWNA-------------------------------MISGYCQSGNAVEALDILDEMRLE 123
           GSWN+                               M++G+ Q+G+  +AL+    M  E
Sbjct: 242 GSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEE 301

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           G   +  T+ S L  CA+   + +GL IH Y+  +G + NL +   L++MYAK G + HA
Sbjct: 302 GARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHA 361

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            +VF +  E+ ++ W+ +I  +        A  +F  M+  G +PD +        +A L
Sbjct: 362 EKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVF------LAVL 415

Query: 244 NDCRNSRSVHGFI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK-D 296
           N C +S  V+  +     MRRG+ +E  +     VVDM  + G ++ A      +P+  D
Sbjct: 416 NACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPD 475

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            + W  L      +     A    + + +    +P  G+YV +  AY+ VG
Sbjct: 476 FVVWGALFCACRTHKNVEMAELASKKLLQLEPKHP--GSYVFLSNAYASVG 524



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 147/337 (43%), Gaps = 29/337 (8%)

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
           N     R +HG + R   F    ++    +   + L  ++ A ++F+   +K+   +N L
Sbjct: 53  NSTHKLRQIHGQLYRCNVFSSSRVV-TQFISSCSSLNSVDYAISIFQRFELKNSYLFNAL 111

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           I G A+N     +I  F +M +  +I+P++ T+  +L + + +     G  +H  ++K  
Sbjct: 112 IRGLAENSRFESSISFFVLMLKW-KISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFG 170

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS----SSVPWNAIISCHGIHGQGD--K 417
           L FD FV   LVDMY K   +  A+ +F + P S    S + WN +I  HG    GD  K
Sbjct: 171 LEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLI--HGYCRMGDLVK 228

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A   F  M     + D  ++ SL+      G +   +  F  M E+     ++  +  MV
Sbjct: 229 ATELFDSM----PKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEK-----NVVSWTTMV 279

Query: 478 DLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRL----FE 530
           + F + G    A      M     RP+     + L AC   G ++ G    + L    F+
Sbjct: 280 NGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFK 339

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           +   N+     + ++YA  G  E  ++V    +++GL
Sbjct: 340 L---NLVIGTALVDMYAKCGNIEHAEKVFHETKEKGL 373



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           M++ + + G   +A++ F+   L  G RP+ YT    L AC     L  G +IH  +   
Sbjct: 278 MVNGFSQNGDPEKALETFFCM-LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN 336

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++ +  +L+ MY + G    A K+F +   +    W+ MI G+   G+  +AL   
Sbjct: 337 GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYF 396

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLIN 172
           + M+  G   D +   ++L  C+ S  +  GL     +   Y+++  ++    V    ++
Sbjct: 397 EWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLV----VD 452

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           M  + G +  AL+    M +  D V W ++  A
Sbjct: 453 MLGRAGRLDEALKFIRAMPITPDFVVWGALFCA 485


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/634 (38%), Positives = 369/634 (58%), Gaps = 16/634 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK----ACRNLVDGKKIHCSVLK 56
           MIS YV  G L  A +  Y+   + GL PD YTF  +LK    ACR L  G+++H  ++K
Sbjct: 73  MISGYVNSGSLGSAWE-LYKSMKSFGLMPDAYTFGSILKGVACACR-LDVGQQVHSLIVK 130

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
           +G+E  V+  ++LL MY +      A  +F  +P R+S SWNA+I+G+   G+   A  +
Sbjct: 131 MGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWL 190

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           L  M  EGV +D  T + +L +          + +H  I+KHG++F+  V N  I  Y++
Sbjct: 191 LRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQ 250

Query: 177 FGMMRHALRVFDQMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
            G +  A RVFD  +  RD+V+WNS++AA+   +   TA   F  MQQ G +PD+ T   
Sbjct: 251 CGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTY-- 308

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI-IGNAVVDMY--AKLGIINSACAVFEGL 292
            T+I++  +   N +S+HG +++RG  +E ++ I NAV+ MY  +    +  A  VF  +
Sbjct: 309 -TTIISACSHKDNGKSLHGLVIKRG--LEQLVPICNAVIAMYLESSSNSMEDALNVFHSM 365

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
             KD +SWN+++TG++Q G +  A+++F  M     ++ +   + ++L + S +  L+ G
Sbjct: 366 ESKDRVSWNSILTGFSQTGHSENALKLFVHMRFA-VVDIDHYAFSAVLRSCSDLATLQLG 424

Query: 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412
            +IH   +K+    + FVA+ L+ MY KCG I+DA   F +  + SS+ WN+I+  +  H
Sbjct: 425 QQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQH 484

Query: 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472
           GQGD AL  F QM D+ V+ DHITFV+ LTACSH GLV +G+     M  ++GI P ++H
Sbjct: 485 GQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEH 544

Query: 473 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532
           Y C VDLFGRAG+L  A   I++MP  PDA +W  LLGACR  G++EL A  +  L E++
Sbjct: 545 YACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELE 604

Query: 533 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592
            E    YV++SN+Y ++ +W+    +  L R+R +KK PGWS IEV N+V  F   +R H
Sbjct: 605 PEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDRCH 664

Query: 593 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
             +E+IY  L  L   +K L  V     +L DV+
Sbjct: 665 SHFEEIYQILEQLMEDIKWLDSVAGSDSLLDDVD 698



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 256/528 (48%), Gaps = 22/528 (4%)

Query: 51  HCSVLKLGFEWDVFVAASLLHMY--CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           HC  +KLG   D++   ++L  Y  C  G    A  LFD+M  RD+ +WN MISGY  SG
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
           +   A ++   M+  G+  D  T  SIL   A +  +  G  +H  IVK G E +++  +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 169 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 228
            L++MYAK   +R A  VF  +  R+ VSWN++IA +    D  TA      M++ G++ 
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 229 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288
           D  T   L +++ +    + +  +H  I++ G    D  + NA +  Y++ G +  A  V
Sbjct: 202 DDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHG-VQFDNTVCNATITSYSQCGSLEDAERV 260

Query: 289 FEG-LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           F+G +  +D+++WN+++  +  +     A ++F  M++     P+  TY +I+ A SH  
Sbjct: 261 FDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFG-FEPDIYTYTTIISACSHKD 319

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMY--GKCGRIDDAMSLFYQVPRSSSVPWNAI 405
               G  +H  VIK  L   V +   ++ MY       ++DA+++F+ +     V WN+I
Sbjct: 320 ---NGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSI 376

Query: 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465
           ++     G  + AL  F  M    V  DH  F ++L +CS    +  GQ+  H++  + G
Sbjct: 377 LTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQ-IHVLTVKSG 435

Query: 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI-WGALLGACRIHGNMELGAVA 524
            + +      ++ ++ + G +  A    +      D+SI W +++ A   HG    G VA
Sbjct: 436 FESNDFVASSLIFMYSKCGMIEDARKSFEKTA--KDSSITWNSIMFAYAQHGQ---GDVA 490

Query: 525 SDRLFEVDSENVGY----YVLMSNIYANVGKWE-GVDEVRSLARDRGL 567
               F++  + V      +V      +++G  E G   ++S+A D G+
Sbjct: 491 LGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGI 538


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 322/544 (59%), Gaps = 3/544 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N   SN LIN Y + G +  A +VFD+M +R + +WN++IA   Q          F  M 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             G  PD  TL S+ S  A L      + +HG+ ++ G  + D+++ +++  MY + G +
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLEL-DLVVNSSLAHMYMRNGKL 142

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                V   +PV+++++WNTLI G AQNG     + +++MM+  +   PN+ T+V++L +
Sbjct: 143 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMK-ISGCRPNKITFVTVLSS 201

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S +    QG +IHA  IK      V V + L+ MY KCG + DA   F +      V W
Sbjct: 202 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 261

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +++IS +G HGQGD+A+  F  M ++  +  + + F++LL ACSHSGL  +G   F MM 
Sbjct: 262 SSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMV 321

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           E++G KP LKHY C+VDL GRAG L  A   I++MP++PD  IW  LL AC IH N E+ 
Sbjct: 322 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMA 381

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
                 + E+D  +   YVL++N++A+  +W  V EVR   RD+ +KK  G S  E   +
Sbjct: 382 QKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGE 441

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+R+  K ++IY  L+ LT +MK  GY PD + VL D++E+EKE  L  HSE+L
Sbjct: 442 VHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKL 501

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AF ++  P  +PI+I KNLRVC DCH   K+IS I  REI +RD +RFHHF +G CSC
Sbjct: 502 AVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSC 561

Query: 702 GDYW 705
           GDYW
Sbjct: 562 GDYW 565



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 190/371 (51%), Gaps = 23/371 (6%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++ Y R G    ARK+FD+MP R   +WNAMI+G  Q     E L +  EM   G S D
Sbjct: 31  LINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPD 90

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+    A   ++  G  IH Y +K+GLE +L V+++L +MY + G ++    V  
Sbjct: 91  EYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIR 150

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  R++V+WN++I    Q+  P T    +  M+ +G +P+ +T V++ S  + L     
Sbjct: 151 SMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ 210

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   ++ G     V + ++++ MY+K G +  A   F     +D + W+++I+ Y 
Sbjct: 211 GQQIHAEAIKIG-ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYG 269

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +G   EAI++F  M E  E+  N+  ++++L A SH G   +G+++          FD+
Sbjct: 270 FHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLEL----------FDM 319

Query: 369 FVA-----------TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
            V            TC+VD+ G+ G +D A ++   +P +   V W  ++S   IH   +
Sbjct: 320 MVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAE 379

Query: 417 KALNFFRQMLD 427
            A   F+++L+
Sbjct: 380 MAQKVFKEILE 390



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD YT   V       R++  G++IH   +K G E D+ V +SL HMY R G     
Sbjct: 86  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDG 145

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +   MPVR+  +WN +I G  Q+G     L +   M++ G   + IT  ++L  C+  
Sbjct: 146 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 205

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH   +K G    + V ++LI+MY+K G +  A + F +  + D V W+S+I
Sbjct: 206 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 265

Query: 203 AAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +AY        A   F +M +Q  ++ + +  ++L    +          +   ++ +  
Sbjct: 266 SAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYG 325

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
           F   +     VVD+  + G ++ A A+ + +P+K D + W TL++    +  A  A +VF
Sbjct: 326 FKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVF 385

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +   E  EI+PN      +L A  H  A R
Sbjct: 386 K---EILEIDPNDSA-CYVLLANVHASAKR 411



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 133/305 (43%), Gaps = 32/305 (10%)

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME-------- 324
           + MY+KLG + SA A++E +  K+ +S N LI GY + G    A +VF  M         
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 325 ---------ECNE-------------INPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362
                    E NE              +P++ T  S+    + + ++  G +IH   IK 
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422
            L  D+ V + L  MY + G++ D   +   +P  + V WN +I  +  +G  +  L  +
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
           + M   G RP+ ITFV++L++CS   +  +GQ+  H    + G    +     ++ ++ +
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVVSSLISMYSK 239

Query: 483 AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542
            G LG A           D  +W +++ A   HG  +      + + E     V     +
Sbjct: 240 CGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFL 298

Query: 543 SNIYA 547
           + +YA
Sbjct: 299 NLLYA 303


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 366/617 (59%), Gaps = 8/617 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           M+  YV+ G ++ AV  F +    SG  P+F T    L  C    +L+ G ++H   +K 
Sbjct: 219 MMDGYVKAGDVASAVGLF-RVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKY 277

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +V VA +L+ MY +      A +LF  MP  D  +WN MISG  Q+G   +AL + 
Sbjct: 278 GLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLF 337

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G+  D +T+AS+LP     +    G  IH YIV++    ++F+ + L+++Y K 
Sbjct: 338 CDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKC 397

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R A  VFD     DVV  +++I+ Y  +     A   F  +   GI+P+ + + S  
Sbjct: 398 RDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTL 457

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +   R  + +HG++++   +     + +A++DMY+K G ++ +  +F  +  KD 
Sbjct: 458 PACASMAAMRIGQELHGYVLKNA-YEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDE 516

Query: 298 ISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++WN++I+ +AQNG   EA+++F QM+ E   +  N  T  SIL A + + A+  G +IH
Sbjct: 517 VTWNSMISSFAQNGEPEEALDLFRQMIME--GVKYNNVTISSILSACAGLPAIYYGKEIH 574

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
             +IK  +  D+F  + L+DMYGKCG ++ A+ +F  +P  + V WN+IIS +G HG   
Sbjct: 575 GIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVK 634

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           ++++    M +EG + DH+TF++L++AC+H+G V EG R F  M EE+ I+P ++H  CM
Sbjct: 635 ESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCM 694

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL+ RAG L  A  FI +MP +PDA IWGALL ACR+H N+EL  +AS  LF++D  N 
Sbjct: 695 VDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNC 754

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVLMSNI A  G+W+GV ++R L +D+ ++K PG+S ++VNN   +F   ++ HP  E
Sbjct: 755 GYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSE 814

Query: 597 KIYDELRNLTAKMKSLG 613
           +IY  L++L  ++K  G
Sbjct: 815 EIYMSLKSLIIELKQEG 831



 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 284/495 (57%), Gaps = 7/495 (1%)

Query: 25  SGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANV 81
           S  RPD +T P V+K+C  L     G+ +H +   LG + D++V ++L+ MY   GL + 
Sbjct: 141 SSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDG 200

Query: 82  ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141
           AR++FD M  RD   WN M+ GY ++G+   A+ +   MR  G   +  T+A  L VCA 
Sbjct: 201 AREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAA 260

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             ++LSG+ +H   VK+GLE  + V+N L++MYAK   +  A R+F  M   D+V+WN +
Sbjct: 261 EADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGM 320

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I+   Q+     A   F  MQ++G+QPD +TL SL   + +LN  +  + +HG+I+R   
Sbjct: 321 ISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCA 380

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + DV + +A+VD+Y K   +  A  VF+     DV+  +T+I+GY  N ++  A+++F+
Sbjct: 381 HV-DVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFR 439

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            +     I PN     S LPA + + A+R G ++H  V+KN      +V + L+DMY KC
Sbjct: 440 YLLALG-IKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKC 498

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           GR+D +  +F ++     V WN++IS    +G+ ++AL+ FRQM+ EGV+ +++T  S+L
Sbjct: 499 GRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSIL 558

Query: 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD 501
           +AC+    +  G+   H +  +  I+  L     ++D++G+ G+L +A    ++MP + +
Sbjct: 559 SACAGLPAIYYGKE-IHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNE 617

Query: 502 ASIWGALLGACRIHG 516
            S W +++ A   HG
Sbjct: 618 VS-WNSIISAYGAHG 631



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 349 LRQGIKIHARVIKNCLC-----FDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSV 400
           L  G++IHAR + + L          + T LV MY    R  DA+++F  +PR   ++++
Sbjct: 52  LPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAAL 111

Query: 401 PWNAIISCHGIHGQGDKALNFFRQML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           PWN +I    + G    A+ F+ +M       RPD  T   ++ +C+  G +  G R  H
Sbjct: 112 PWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLG-RLVH 170

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
                 G+   +     ++ ++  AG L  A      M  R D  +W  ++      G +
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDER-DCVLWNVMM-----DGYV 224

Query: 519 ELGAVAS 525
           + G VAS
Sbjct: 225 KAGDVAS 231


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 345/570 (60%), Gaps = 7/570 (1%)

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C     +  G  +H  +V  G    L+++  L+ MYA+ G +  A  V D M ER+VVSW
Sbjct: 45  CVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSW 104

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIV-AQLNDCRNSRSVHGFI 256
            ++I+ Y Q+  P  A   F  M +AG +P+  TL S LTS   +Q       + VH F 
Sbjct: 105 TAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFA 164

Query: 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316
           +++  F   + +G++++DMYA+   I  A  VF+ LP +DV+S+ T+++GY + GL  EA
Sbjct: 165 IKKN-FELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEA 223

Query: 317 IEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           + +F+ +   NE +  NQ T+  +L A S + ++  G ++H  +++  L F + +   L+
Sbjct: 224 LNLFRQLY--NEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLI 281

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           DMY KCG++  +  +F  +P  S V WNA++  +G HG   + +  FR M D+ V+PD +
Sbjct: 282 DMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSV 340

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T +++L   SH GLV EG   F  + +E     + +HYGC++DL GR+G L  A   IQ 
Sbjct: 341 TLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQK 400

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MP +P  +IWG+LLGACR+H N+ +G   + +LF+++ EN G YV++SNIYA    W+ V
Sbjct: 401 MPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDV 460

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
             +R L   + + K PG S + ++  +  F++  R HP+ E I  ++  + A +K+ G+V
Sbjct: 461 FRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFV 520

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           PD S VL DV++++KE +L  HSE+LAI FG++S+P    IQ+ KNLR+C DCHN+ KF+
Sbjct: 521 PDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFV 580

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S++  REI +RD NRFH   +G C+CGDYW
Sbjct: 581 SKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 215/392 (54%), Gaps = 14/392 (3%)

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           F+ +   +  C   R L +G+++H  ++  G+   +++A  L+ MY R G    A  + D
Sbjct: 35  FHDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLD 94

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            MP R+  SW AMISGY Q+    EA D+   M   G   +  T+AS+L  C  S  I  
Sbjct: 95  GMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQ 154

Query: 148 GLL--IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             +  +H + +K   E ++FV ++L++MYA+   ++ A RVFD +  RDVVS+ +I++ Y
Sbjct: 155 HQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGY 214

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFM 263
            +      A   F  +   G+Q + +T   L + ++ L+     + VHG I+RR   +FM
Sbjct: 215 TRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFM 274

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
               + N+++DMY+K G +  +  VF+ +P + V+SWN ++ GY ++G+A E +++F+ M
Sbjct: 275 A---LQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM 331

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCG 382
             C+++ P+  T +++L  YSH G + +G+ +   ++K      +     C++D+ G+ G
Sbjct: 332 --CDKVKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSG 389

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG 413
           +++ A+ L  ++P + +   W +++    +H 
Sbjct: 390 QLEKALLLIQKMPFQPTRAIWGSLLGACRVHA 421



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 159/321 (49%), Gaps = 30/321 (9%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR-----NLVDGKKIHCSVL 55
           MIS Y +  R +EA D F    L +G  P+ +T   VL +C      +    K++H   +
Sbjct: 107 MISGYSQNERPAEAWDLFIMM-LRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAI 165

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           K  FE  +FV +SLL MY R      AR++FD +P RD  S+  ++SGY + G   EAL+
Sbjct: 166 KKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALN 225

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
           +  ++  EG+  + +T + +L   +   ++  G  +H  I++  L F + + N+LI+MY+
Sbjct: 226 LFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYS 285

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K G + ++ RVFD M ER VVSWN+++  Y +          F  M    ++PD +TL++
Sbjct: 286 KCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLA 344

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA-----------VVDMYAKLGIINS 284
           +    +           HG ++  G  M D I+              V+D+  + G +  
Sbjct: 345 VLLGYS-----------HGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEK 393

Query: 285 ACAVFEGLPVKDVIS-WNTLI 304
           A  + + +P +   + W +L+
Sbjct: 394 ALLLIQKMPFQPTRAIWGSLL 414


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 347/597 (58%), Gaps = 5/597 (0%)

Query: 33  TFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           TF  V ++C  L     G ++H   LK  F  DV +  + L MY +    + A+KLF+ +
Sbjct: 277 TFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P  +  S+NA+I GY +S   +EAL +   ++  G+ +D ++++     CA     L GL
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGL 396

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
            +H   +K   + N+ V+N +++MY K G +  A  VF++M+ RD VSWN+IIAA+EQ+ 
Sbjct: 397 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 456

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +       F  M Q+G++PD  T  S+    A          +H  I++    + D  +G
Sbjct: 457 NEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGL-DSFVG 515

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            A++DMY+K G++  A  + + L  + V+SWN +I+G++    + EA + F  M E   +
Sbjct: 516 IALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG-V 574

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
           +P+  TY +IL   +++  +  G +IHA++IK  L  D ++++ LVDMY KCG + D   
Sbjct: 575 DPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQL 634

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449
           +F + P    V WNA++  +  HG G++AL  F  M  E V+P+H TF+++L AC H GL
Sbjct: 635 IFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGL 694

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V +G  YFH M   +G+ P L+HY C+VD+ GR+G +  A   I+ MP   DA IW  LL
Sbjct: 695 VEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLL 754

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             C+IHGN+E+   A+  + +++ E+   YVL+SNIYAN G W  V ++R + R  GLKK
Sbjct: 755 SICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKK 814

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
            PG S IE+ ++V  F  G++ HP+ ++IY+ L  LT +MK +GY+PD  F+L D E
Sbjct: 815 EPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILNDDE 871



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/520 (30%), Positives = 271/520 (52%), Gaps = 10/520 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +IS Y+  G   + +D F Q     G   D  TF  VLK+C +L D   G +IH   +K+
Sbjct: 145 LISGYLHNGDHRKVIDVFLQMG-RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKM 203

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV   ++LL MY +    + + + F  MP ++  SW+A+I+G  Q+ +    L++ 
Sbjct: 204 GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELF 263

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+  GV +   T AS+   CA    +  G  +H + +K     ++ +    ++MY K 
Sbjct: 264 KEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKC 323

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++F+ +   ++ S+N+II  Y +S+  I A G F  +Q++G+  D ++L    
Sbjct: 324 NNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAF 383

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +        VHG  M +     ++ + NA++DMY K G +  AC VFE +  +D 
Sbjct: 384 RACAVIKGDLEGLQVHGLSM-KSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 442

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I  + QNG   + + +F  M +   + P++ TY S+L A +   AL  G++IH 
Sbjct: 443 VSWNAIIAAHEQNGNEEKTLSLFVWMLQSG-MEPDEFTYGSVLKACAGWQALNCGMEIHN 501

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+IK+ L  D FV   L+DMY KCG ++ A  L  ++   + V WNAIIS   +  Q ++
Sbjct: 502 RIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE 561

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCM 476
           A   F +ML+ GV PD+ T+ ++L  C++   V  G++ +  ++++E     ++     +
Sbjct: 562 AQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS--STL 619

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
           VD++ + G++       +  P R D   W A++     HG
Sbjct: 620 VDMYSKCGNMQDFQLIFEKAPNR-DFVTWNAMVCGYAQHG 658



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/547 (27%), Positives = 268/547 (48%), Gaps = 42/547 (7%)

Query: 33  TFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR-------------- 75
           TF  + + C   + L  GK+ H  ++   F+  VFV   L+ MY +              
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 76  ------------FGLAN-----VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
                       FG A      VA+KLFD MP RD  SWN++ISGY  +G+  + +D+  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +M   G   D  T A +L  C+  ++   G+ IH   VK G + ++   + L++MYAK  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  +++ F  M E++ VSW++IIA   Q++D       F  MQ+AG+     T  S+  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A L+  R    +HG  ++   F  DV+IG A +DMY K   ++ A  +F  LP  ++ 
Sbjct: 284 SCAGLSALRLGSQLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           S+N +I GYA++    EA+ +F+++++   +  ++ +      A + +    +G+++H  
Sbjct: 343 SYNAIIVGYARSDKGIEALGMFRLLQKSG-LGLDEVSLSGAFRACAVIKGDLEGLQVHGL 401

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K+    ++ VA  ++DMYGKCG + +A  +F ++    +V WNAII+ H  +G  +K 
Sbjct: 402 SMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKT 461

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMV 477
           L+ F  ML  G+ PD  T+ S+L AC+    ++ G   +  +++   G+   +     ++
Sbjct: 462 LSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGI--ALI 519

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSEN 535
           D++ + G +  A      +  +   S W A++    +    E       ++ E  VD +N
Sbjct: 520 DMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 578

Query: 536 VGYYVLM 542
             Y  ++
Sbjct: 579 FTYATIL 585


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/574 (37%), Positives = 343/574 (59%), Gaps = 35/574 (6%)

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTT--MQ 222
           ++   I + +  G +RH++ +F+  +   ++ ++N+++ A+ Q N   T   +F    + 
Sbjct: 60  IAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVL 119

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-- 280
                PD  T  S+    A L      + VH F+ + G    ++ + N++VD+Y K+G  
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYG-CESNLFVRNSLVDLYFKVGCN 178

Query: 281 -----------------------------IINSACAVFEGLPVKDVISWNTLITGYAQNG 311
                                        +++ A  VF+G+  K+++SW+T+I+GYA+N 
Sbjct: 179 CIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNE 238

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
             ++AIE+F+ M+    + PN  T VS+L A +H+GAL  G  IH  + +N +   +F+ 
Sbjct: 239 KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLG 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             L DMY KCG + +A  +F+++     + W+ II    ++G  ++A NFF +M+++G+ 
Sbjct: 299 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 358

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ I+F+ LLTAC+H+GLV +G  YF MM + +GI P ++HYGC+VDL  RAG L  A +
Sbjct: 359 PNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAES 418

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
            I +MP++P+  +WGALLG CRI+ + E G     R+ E+DS + G  V ++N+YA++G+
Sbjct: 419 LINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGR 478

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
            +     R   RD    KTPG S IE+NN V  F+ G+ +HP+  +IY  +R L  KMK 
Sbjct: 479 LDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKV 538

Query: 612 LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNW 671
            GY P    V+ +++E+EKE  L++HSE+LA+AFG+I++   + I+I KNLRVC DCH+ 
Sbjct: 539 AGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDA 598

Query: 672 TKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            K IS+I EREI+VRD +RFHHFKDG CSC DYW
Sbjct: 599 IKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 178/379 (46%), Gaps = 38/379 (10%)

Query: 20  QFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76
           Q  L +   PD YTF  VLKAC  L   ++G+K+HC V K G E ++FV  SL+ +Y + 
Sbjct: 116 QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKV 175

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSG---------------------------- 108
           G   +A+KLFD+M VRD  SWN +ISGYC SG                            
Sbjct: 176 GCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYA 235

Query: 109 ---NAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
                 +A+++  +M+ EG ++ + +T+ S+L  CA    +  G  IH +I ++ +E  L
Sbjct: 236 RNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL 295

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           F+ N L +MYAK G +  A  VF +M ERDV+SW+ II           A  FF  M + 
Sbjct: 296 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 355

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           G++P+ ++ + L +                 + +       +     VVD+ ++ G ++ 
Sbjct: 356 GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQ 415

Query: 285 ACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           A ++   +P++ +VI W  L+ G      A     V   + E +  + + G+ V +   Y
Sbjct: 416 AESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELD--SNHSGSLVYLANVY 473

Query: 344 SHVGALRQGIKIHARVIKN 362
           + +G L        R+  N
Sbjct: 474 ASMGRLDDAASCRLRMRDN 492



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 5/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKL 57
           MIS Y R  + ++A++ F Q     GL P+  T   VL AC +L  +D GK IH  + + 
Sbjct: 230 MISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRN 289

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             E  +F+  +L  MY + G    A+ +F +M  RD  SW+ +I G    G A EA +  
Sbjct: 290 KIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFF 349

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
            EM  +G+  + I+   +L  C  +  +  GL    +    +G+   +     ++++ ++
Sbjct: 350 AEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSR 409

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A  + + M M+ +V+ W +++  
Sbjct: 410 AGRLDQAESLINSMPMQPNVIVWGALLGG 438


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 351/602 (58%), Gaps = 6/602 (0%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASL 69
           EA++ F +      L+PD YT+P VLKAC  L   V GK IH  ++K G   D+ V +SL
Sbjct: 88  EALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSL 147

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           + MY +      A  LF++MP +D   WN +IS Y QSGN  EAL+    MR  G   + 
Sbjct: 148 VGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNS 207

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T+ + +  CAR  ++  G+ IH  ++  G   + F+S+ L++MY K G +  A+ VF+Q
Sbjct: 208 VTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQ 267

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M ++ VV+WNS+I+ Y    D I+    F  M   G++P L TL SL  + ++       
Sbjct: 268 MPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG 327

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + VHG+ +R      DV I ++++D+Y K G +  A  +F+ +P   V+SWN +I+GY  
Sbjct: 328 KFVHGYTIRNR-IQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVA 386

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
            G   EA+ +F  M + + + P+  T+ S+L A S + AL +G +IH  +I+  L  +  
Sbjct: 387 EGKLFEALGLFSEMRK-SYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEV 445

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   L+DMY KCG +D+A S+F  +P+   V W ++I+ +G HGQ   AL  F +ML   
Sbjct: 446 VMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSN 505

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PD +TF+++L+AC H+GLV EG  YF+ M   +GI P ++HY C++DL GRAG L  A
Sbjct: 506 MKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEA 565

Query: 490 HNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           +  +Q  P +R D  +   L  ACR+H N++LGA  +  L + D ++   Y+L+SN+YA+
Sbjct: 566 YEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYAS 625

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
             KW+ V  VRS  ++ GLKK PG S IE+N K+  F+  + +H   E ++  L  L+  
Sbjct: 626 AHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDH 685

Query: 609 MK 610
           M+
Sbjct: 686 ME 687



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 159/489 (32%), Positives = 273/489 (55%), Gaps = 13/489 (2%)

Query: 36  PVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM--P 90
           P+L+AC N   L  GK IH  V+ LG + D+F+  +L+++Y    L + A+ +FD+M  P
Sbjct: 8   PLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENP 67

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDE-MRLEGVSMDPITVASILPVCARSDNILSGL 149
              S  WN +++GY ++   VEAL++ ++ +    +  D  T  S+L  C      + G 
Sbjct: 68  CEIS-LWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGK 126

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
           +IH  +VK GL  ++ V ++L+ MYAK      A+ +F++M E+DV  WN++I+ Y QS 
Sbjct: 127 MIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
           +   A  +F  M++ G +P+ +T+ +  S  A+L D      +H  ++  G F+ D  I 
Sbjct: 187 NFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSG-FLLDSFIS 245

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE- 328
           +A+VDMY K G +  A  VFE +P K V++WN++I+GY   G +   I++F+ M   NE 
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMY--NEG 303

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
           + P   T  S++   S    L +G  +H   I+N +  DVF+ + L+D+Y KCG+++ A 
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
           ++F  +P+S  V WN +IS +   G+  +AL  F +M    V PD ITF S+LTACS   
Sbjct: 364 NIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLA 423

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            + +G+   +++ E+  +  +    G ++D++ + G +  A +  + +P R D   W ++
Sbjct: 424 ALEKGEEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR-DLVSWTSM 481

Query: 509 LGACRIHGN 517
           + A   HG 
Sbjct: 482 ITAYGSHGQ 490



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 232/486 (47%), Gaps = 41/486 (8%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186
           MD   +  +L  C  S ++  G LIH  +V  GL+ ++F+  NLIN+Y    +  HA  V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 187 FDQMMERDVVS-WNSIIAAYEQSNDPITAHGFFTT-MQQAGIQPDLLTLVSLTSIVAQLN 244
           FD M     +S WN ++A Y ++   + A   F   +    ++PD  T  S+      L 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLY 120

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + +H  +++ G  M D+++G+++V MYAK      A  +F  +P KDV  WNT+I
Sbjct: 121 KYVLGKMIHTCLVKTGLMM-DIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           + Y Q+G   EA+E F +M       PN  T  + + + + +  L +G++IH  +I +  
Sbjct: 180 SCYYQSGNFKEALEYFGLMRRFG-FEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             D F+++ LVDMYGKCG ++ A+ +F Q+P+ + V WN++IS +G+ G     +  F++
Sbjct: 239 LLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKR 298

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M +EGV+P   T  SL+  CS S  + EG ++ H       I+  +     ++DL+ + G
Sbjct: 299 MYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQSDVFINSSLMDLYFKCG 357

Query: 485 HLGMAHNFIQNMP----------------------------------VRPDASIWGALLG 510
            + +A N  + +P                                  V PDA  + ++L 
Sbjct: 358 KVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLT 417

Query: 511 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
           AC     +E G    + + E   +N    V+M  +     K   VDE  S+ +    +  
Sbjct: 418 ACSQLAALEKGEEIHNLIIEKKLDNNE--VVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475

Query: 571 PGWSSI 576
             W+S+
Sbjct: 476 VSWTSM 481



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MIS YV  G+L EA+  F +    S + PD  TF  VL AC  L     G++IH  +++ 
Sbjct: 380 MISGYVAEGKLFEALGLFSEMR-KSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK 438

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             + +  V  +LL MY + G  + A  +F  +P RD  SW +MI+ Y   G A  AL++ 
Sbjct: 439 KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELF 498

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
            EM    +  D +T  +IL  C  +  +  G      +V  +G+   +   + LI++  +
Sbjct: 499 AEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGR 558

Query: 177 FGMMRHALRVFDQMME-RDVVSWNSII 202
            G +  A  +  Q  E RD V   S +
Sbjct: 559 AGRLHEAYEILQQNPEIRDDVELLSTL 585


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/661 (34%), Positives = 368/661 (55%), Gaps = 38/661 (5%)

Query: 82  ARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
           A  +F  +P   +S  +N  +    +S      +     +R  G  +D  +   IL   +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS 200
           +   +  G+ +H    K     + FV    ++MYA  G + +A  VFD+M  RDVV+WN+
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI---- 256
           +I  Y +      A   F  M+ + + PD + L ++ S   +  + R +R+++ F+    
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242

Query: 257 ----------------------MRRGWF----MEDVIIGNAVVDMYAKLGIINSACAVFE 290
                                 M R +F    + ++ +  A+V  Y+K G ++ A  +F+
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
               KD++ W T+I+ Y ++    EA+ VF+ M  C+ I P+  +  S++ A +++G L 
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC-CSGIKPDVVSMFSVISACANLGILD 361

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
           +   +H+ +  N L  ++ +   L++MY KCG +D    +F ++PR + V W+++I+   
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           +HG+   AL+ F +M  E V P+ +TFV +L  CSHSGLV EG++ F  M +E+ I P L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           +HYGCMVDLFGRA  L  A   I++MPV  +  IWG+L+ ACRIHG +ELG  A+ R+ E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 531 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 590
           ++ ++ G  VLMSNIYA   +WE V  +R +  ++ + K  G S I+ N K   F  G++
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601

Query: 591 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 650
            H +  +IY +L  + +K+K  GYVPD   VL DVEE+EK+ ++  HSE+LA+ FG+++ 
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNE 661

Query: 651 PPKSP------IQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDY 704
             +        I+I KNLRVC DCH + K +S++ EREIIVRD  RFH +K+G+CSC DY
Sbjct: 662 EKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721

Query: 705 W 705
           W
Sbjct: 722 W 722



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 240/459 (52%), Gaps = 52/459 (11%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FYQ     G R D ++F P+LKA      L +G ++H    K+    D FV    + MY 
Sbjct: 98  FYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYA 157

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
             G  N AR +FD+M  RD  +WN MI  YC+ G   EA  + +EM+   V  D + + +
Sbjct: 158 SCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCN 217

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGL------------------------EF-------N 163
           I+  C R+ N+     I+ +++++ +                        EF       N
Sbjct: 218 IVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRN 277

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           LFVS  +++ Y+K G +  A  +FDQ  ++D+V W ++I+AY +S+ P  A   F  M  
Sbjct: 278 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 337

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
           +GI+PD++++ S+ S  A L     ++ VH  I   G    ++ I NA+++MYAK G ++
Sbjct: 338 SGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNG-LESELSINNALINMYAKCGGLD 396

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343
           +   VFE +P ++V+SW+++I   + +G AS+A+ +F  M++ N + PN+ T+V +L   
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN-VEPNEVTFVGVLYGC 455

Query: 344 SHVGALRQGIKIHARVIKNCLCFDVFVAT-------CLVDMYGKCGRIDDAMSLFYQVPR 396
           SH G + +G KI A +       D +  T       C+VD++G+   + +A+ +   +P 
Sbjct: 456 SHSGLVEEGKKIFASMT------DEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPV 509

Query: 397 SSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           +S+V  W +++S   IHG+ +      +++L+  + PDH
Sbjct: 510 ASNVVIWGSLMSACRIHGELELGKFAAKRILE--LEPDH 546



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 128/261 (49%), Gaps = 12/261 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VDGKK-IHCSVLKL 57
           MIS YV      EA+  F +    SG++PD  +   V+ AC NL  +D  K +H  +   
Sbjct: 315 MISAYVESDYPQEALRVFEEMC-CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E ++ +  +L++MY + G  +  R +F+ MP R+  SW++MI+     G A +AL + 
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLINMYAK 176
             M+ E V  + +T   +L  C+ S  +  G  I   +  ++ +   L     +++++ +
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD----LL 231
             ++R AL V + M +  +VV W S+++A     +     G F   +   ++PD    L+
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGE--LELGKFAAKRILELEPDHDGALV 551

Query: 232 TLVSLTSIVAQLNDCRNSRSV 252
            + ++ +   +  D RN R V
Sbjct: 552 LMSNIYAREQRWEDVRNIRRV 572


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 299/508 (58%), Gaps = 37/508 (7%)

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WNS + A  + + PI A   F  ++Q  + PD  T  S+      L D  N R +HG + 
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 188

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
           + G+                                     SW ++I GY Q G A EAI
Sbjct: 189 KVGFR------------------------------------SWTSMIAGYVQCGKAKEAI 212

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
            +F  MEE   +  N+ T V++L A + +GAL  G++IH    ++    +V ++  L+DM
Sbjct: 213 HLFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDM 271

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG +++A  +F ++   + V W+A+I    +HG+ ++AL  F  M   G+ P+ +TF
Sbjct: 272 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 331

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           + LL ACSH GL+SEG+R+F  M  ++GI P ++HYGCMVDL  RAG L  AH FI NMP
Sbjct: 332 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           ++P+  +WGALLGACR+H N+E+   A   L E+D  N GYYV++SNIYA  G+WE    
Sbjct: 392 MKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTAR 451

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           VR   +DR +KKTPGWSSI V+  V  F  G  +HP  E+I+     L  +M+  GYVP+
Sbjct: 452 VRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPN 511

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
            S VL D+EE EK   ++ HSE+LA+ FG++++P ++PI+I KNLR+C DCH+  K IS 
Sbjct: 512 TSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISA 571

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I  REI+VRD NRFH F D  CSC DYW
Sbjct: 572 IVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 150/327 (45%), Gaps = 49/327 (14%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T   VL+AC NL+D   G+ +H  V K+GF                          
Sbjct: 159 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR------------------------- 193

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
                     SW +MI+GY Q G A EA+ +  +M   GV  + +TV ++L  CA    +
Sbjct: 194 ----------SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 243

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G+ IH Y  +HG + N+ +SN LI+MY K G +  A +VF++M ER VVSW+++I   
Sbjct: 244 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGL 303

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
                   A   F+ M Q GI+P+ +T + L    + +      R     + R    +  
Sbjct: 304 AMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQ 363

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITG---YAQNGLASEAIEVFQ 321
           +     +VD+ ++ G+++ A      +P+K + + W  L+     +    +A EAI+   
Sbjct: 364 IEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLL 423

Query: 322 MMEECNEINP-NQGTYVSILPAYSHVG 347
                 E++P N G YV +   Y+  G
Sbjct: 424 ------ELDPLNDGYYVVLSNIYAEAG 444



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 181/426 (42%), Gaps = 53/426 (12%)

Query: 97  WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156
           WN+ +    +  + ++A+ +   +R   V  D  T +S+L  C    ++ +G ++H  + 
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 188

Query: 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG 216
           K G                                     SW S+IA Y Q      A  
Sbjct: 189 KVGFR-----------------------------------SWTSMIAGYVQCGKAKEAIH 213

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            F  M++AG++ + +T+V++ +  A L        +H +  R G F  +V I N ++DMY
Sbjct: 214 LFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG-FKRNVRISNTLIDMY 272

Query: 277 AKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336
            K G +  AC VFE +  + V+SW+ +I G A +G A EA+ +F  M +   I PN  T+
Sbjct: 273 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG-IEPNGVTF 331

Query: 337 VSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           + +L A SH+G + +G +  A + ++  +   +    C+VD+  + G + +A      +P
Sbjct: 332 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391

Query: 396 -RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            + + V W A++    +H   + A    + +L+     D   +V L    + +G   +  
Sbjct: 392 MKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGY-YVVLSNIYAEAGRWEDTA 450

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI----WGALLG 510
           R    M++   +K         VD        G+ H F+      PD       W  LL 
Sbjct: 451 RVRKFMKDR-QVKKTPGWSSITVD--------GVVHEFVAGEESHPDTEQIFQRWEELLE 501

Query: 511 ACRIHG 516
             R+ G
Sbjct: 502 EMRLKG 507



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL--VD-GKKIHCSVLKL 57
           MI+ YV+CG+  EA+  F +    +G++ +  T   VL AC +L  +D G +IH    + 
Sbjct: 198 MIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH 256

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ +V ++ +L+ MY + G    A K+F++M  R   SW+AMI G    G A EAL + 
Sbjct: 257 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 316

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
            +M   G+  + +T   +L  C+    I  G      + + +G+   +     ++++ ++
Sbjct: 317 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 376

Query: 177 FGMMRHALR-VFDQMMERDVVSWNSIIAA 204
            G++  A   + +  M+ + V W +++ A
Sbjct: 377 AGLLHEAHEFILNMPMKPNGVVWGALLGA 405


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 338/568 (59%), Gaps = 25/568 (4%)

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW 198
           C     +  G  +H  +V  G    L+++  L+ MYA+ G +  A  V D M ER+VVSW
Sbjct: 45  CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSW 104

Query: 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 258
            ++I+ Y Q+  P  A   F  M +AGI                       + VH F ++
Sbjct: 105 TAMISGYSQNERPDQAWELFIMMLRAGIH--------------------QVKQVHAFAVK 144

Query: 259 RGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE 318
              F   + +G++++DMYAK   I  A  VF+ LP +DV+S+  +++GY Q GL  EA++
Sbjct: 145 TN-FELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALD 203

Query: 319 VFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           +F+++   NE +  NQ T+ ++L A S + ++  G ++H  +++  L F + +   L+DM
Sbjct: 204 LFRLLY--NEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDM 261

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y KCG++  +  +F  +P  S V WNA++  +G HG   + +  FR M DE V+PD +T 
Sbjct: 262 YSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTL 320

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           +++L+  SH GLV EG   F  + +E     + +HYGC++DL GR+G L  A N I+ MP
Sbjct: 321 LAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMP 380

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
            +P  +IWG+LLGACR+H N+ +G   + +L +++ EN G YV++SNIYA  G W+ V  
Sbjct: 381 FQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFR 440

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           VR L   + + K PG S + ++  +  F++  R HP+ E I  +++ +   +K+ G+VPD
Sbjct: 441 VRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPD 500

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
            S VL DV++++KE +L  HSE+LAI FG++S+P    IQ+ KNLR+C DCHN+ KF+S+
Sbjct: 501 LSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSK 560

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  REI +RD NRFH   +G C+CGDYW
Sbjct: 561 VYGREISLRDKNRFHLITEGACTCGDYW 588



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 207/389 (53%), Gaps = 32/389 (8%)

Query: 31  FYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 87
           F+ +   +  C   R L +G+++H  ++  G+   +++A  L+ MY R G    AR + D
Sbjct: 35  FHDYDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLD 94

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 147
            MP R+  SW AMISGY Q+    +A ++   M   G+                      
Sbjct: 95  GMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVK------------------ 136

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
              +H + VK   E ++FV ++L++MYAK   ++ A RVFD +  RDVVS+ +I++ Y Q
Sbjct: 137 --QVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQ 194

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG--WFMED 265
                 A   F  +   G+Q + +T  +L + ++ L+     + VHG I+RR   +FM  
Sbjct: 195 LGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMA- 253

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
             + N+++DMY+K G +  +  VF+ +P + V+SWN ++ GY ++GLA E +++F+ M  
Sbjct: 254 --LQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSM-- 309

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRI 384
           C+E+ P+  T +++L  YSH G + +G+ +   ++K      +     C++D+ G+ G++
Sbjct: 310 CDEVKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQL 369

Query: 385 DDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
             A++L  ++P + +   W +++    +H
Sbjct: 370 QKALNLIEKMPFQPTRAIWGSLLGACRVH 398



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 49/394 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQF---------TLTSGL----RPD--FYTFPPVLKACRNLV 45
           ++ +Y RCG L +A +               + SG     RPD  +  F  +L+A  + V
Sbjct: 76  LVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQV 135

Query: 46  DGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
             K++H   +K  FE  +FV +SLL MY +      AR++FD +P RD  S+ A++SGY 
Sbjct: 136 --KQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYT 193

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q G   EALD+   +  EG+  + +T  ++L   +   ++  G  +H  I++  L F + 
Sbjct: 194 QLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMA 253

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           + N+LI+MY+K G + ++ RVFD M ER VVSWN+++  Y +          F +M    
Sbjct: 254 LQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE- 312

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA-----------VVD 274
           ++PD +TL+++ S  +           HG ++  G  M D I+              V+D
Sbjct: 313 VKPDSVTLLAVLSGYS-----------HGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVID 361

Query: 275 MYAKLGIINSACAVFEGLPVKDVIS-WNTLITG--YAQNGLASEAIEVFQMMEECNEINP 331
           +  + G +  A  + E +P +   + W +L+       N    E +      ++  +I P
Sbjct: 362 LLGRSGQLQKALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVA-----QKLLDIEP 416

Query: 332 -NQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            N G YV +   Y+  G  +   ++   ++K  +
Sbjct: 417 ENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTV 450


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 344/583 (59%), Gaps = 7/583 (1%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF---GMMRHA 183
           +D +   + + + ++ +++   + I  Y +K  +E   FV+  LIN   +      M +A
Sbjct: 24  IDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYA 82

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
             +F+ M E D+V +NS+   Y +  +P+     F  + + GI PD  T  SL    A  
Sbjct: 83  RHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVA 142

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303
                 R +H   M+ G   ++V +   +++MY +   ++SA  VF+ +    V+ +N +
Sbjct: 143 KALEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           ITGYA+    +EA+ +F+ M+    + PN+ T +S+L + + +G+L  G  IH    K+ 
Sbjct: 202 ITGYARRNRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
            C  V V T L+DM+ KCG +DDA+S+F ++    +  W+A+I  +  HG+ +K++  F 
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M  E V+PD ITF+ LL ACSH+G V EG++YF  M  +FGI P +KHYG MVDL   A
Sbjct: 321 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXA 380

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G+L  A+ FI  +P+ P   +W  LL AC  H N++L    S+R+FE+D  + G YV++S
Sbjct: 381 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 440

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           N+YA   KWE VD +R + +DR   K PG SSIEVNN V  F++G+       K++  L 
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500

Query: 604 NLTAKMKSLGYVPDKSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNL 662
            +  ++K  GYVPD S V+  ++ + EKE  L  HSE+LAI FG++++PP + I++ KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560

Query: 663 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           RVC DCHN  K IS I  R+++ RD  RFHHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 200/388 (51%), Gaps = 10/388 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA----NVARKLFDDMPVR 92
           ++  C +L +  +I    +K   E DV   A L++ +C         + AR LF+ M   
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEP 92

Query: 93  DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 152
           D   +N+M  GY +  N +E   +  E+  +G+  D  T  S+L  CA +  +  G  +H
Sbjct: 93  DIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH 152

Query: 153 LYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212
              +K GL+ N++V   LINMY +   +  A  VFD+++E  VV +N++I  Y + N P 
Sbjct: 153 CLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPN 212

Query: 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
            A   F  MQ   ++P+ +TL+S+ S  A L      + +H +  ++  F + V +  A+
Sbjct: 213 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY-AKKHSFCKYVKVNTAL 271

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           +DM+AK G ++ A ++FE +  KD  +W+ +I  YA +G A +++ +F+ M   N + P+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN-VQPD 330

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           + T++ +L A SH G + +G K  ++++ K  +   +     +VD+    G ++DA    
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFI 390

Query: 392 YQVPRS-SSVPWNAIISCHGIHGQGDKA 418
            ++P S + + W  +++    H   D A
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLA 418



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 177/358 (49%), Gaps = 14/358 (3%)

Query: 9   GRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDV 63
            R +  ++ F  F   L  G+ PD YTFP +LKAC   + L +G+++HC  +KLG + +V
Sbjct: 105 SRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNV 164

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
           +V  +L++MY      + AR +FD +       +NAMI+GY +     EAL +  EM+ +
Sbjct: 165 YVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK 224

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
            +  + IT+ S+L  CA   ++  G  IH Y  KH     + V+  LI+M+AK G +  A
Sbjct: 225 YLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
           + +F++M  +D  +W+++I AY        +   F  M+   +QPD +T + L +  +  
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-ISWNT 302
                 R     ++ +   +  +    ++VD+ +  G +  A    + LP+    + W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS------HVGALRQGIK 354
           L+   + +     A +V + + E ++   + G YV +   Y+      +V +LR+ +K
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDD--SHGGDYVILSNLYARNKKWEYVDSLRKVMK 460


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/656 (35%), Positives = 359/656 (54%), Gaps = 21/656 (3%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
           +H    KLG + + FV + L+  Y    L + A  +F+ +  +D+  W AM+S Y ++  
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
              A        L  +S            CAR         IH   +K   +    V   
Sbjct: 244 PENAFRCAQSCSLLAIS------------CARQG-------IHGCAIKTLNDTEPHVGGA 284

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
           L++MYAK G ++ A   F+ +   DV+  + +I+ Y QSN    A   F  + ++ + P+
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 344

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             +L S+      +      + +H   ++ G    D+ +GNA++D YAK   ++S+  +F
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
             L   + +SWNT++ G++Q+GL  EA+ VF  M+   ++   Q TY S+L A +   ++
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAA-QMPCTQVTYSSVLRACASTASI 462

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
           R   +IH  + K+    D  +   L+D Y KCG I DA+ +F  +     + WNAIIS +
Sbjct: 463 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 522

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
            +HGQ   AL  F +M    V  + ITFV+LL+ C  +GLV+ G   F  M+ + GIKP 
Sbjct: 523 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPS 582

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HY C+V L GRAG L  A  FI ++P  P A +W ALL +C IH N+ LG  +++++ 
Sbjct: 583 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKIL 642

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
           E++ ++   YVL+SN+YA  G  + V  +R   R+ G++K PG S +E+  ++  F  G+
Sbjct: 643 EIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGS 702

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
             HP    I   L  L  K    GY+PD + VL DV++++K  +L  HSERLA+A+G++ 
Sbjct: 703 VDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVM 762

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +PP  PI+I KNLR C DCH     IS+I +REIIVRD NRFHHF+DG CSCGDYW
Sbjct: 763 TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 253/531 (47%), Gaps = 33/531 (6%)

Query: 47  GKKIHCSVLKLGF--EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
           G+ +H  V++ G     D+F A  LL+MY + G    AR+LFD MP R+  S+  ++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 164
            Q G+   A  +   +R EG  ++   + ++L +    D       +H    K G + N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV + LI+ Y+   ++  A  VF+ ++ +D V W ++++ Y +++ P  A   F   Q  
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA---FRCAQSC 254

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI--IGNAVVDMYAKLGII 282
                     SL +I          + +HG  ++    + D    +G A++DMYAK G I
Sbjct: 255 ----------SLLAISCA------RQGIHGCAIKT---LNDTEPHVGGALLDMYAKCGDI 295

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             A   FE +P  DVI  + +I+ YAQ+    +A E+F  +   + + PN+ +  S+L A
Sbjct: 296 KDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR-SSVLPNEYSLSSVLQA 354

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            +++  L  G +IH   IK     D+FV   L+D Y KC  +D ++ +F  +  ++ V W
Sbjct: 355 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 414

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE-GQRYFHMMQ 461
           N I+      G G++AL+ F +M    +    +T+ S+L AC+ +  +   GQ +  + +
Sbjct: 415 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 474

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
             F     + +   ++D + + G++  A    Q++  R D   W A++    +HG     
Sbjct: 475 STFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHLMER-DIISWNAIISGYALHGQAADA 531

Query: 522 AVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKT 570
               DR+ +  V+S ++ +  L+S   +      G+    S+  D G+K +
Sbjct: 532 LELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPS 582



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 178/361 (49%), Gaps = 19/361 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y +  +  +A + F +   +S L P+ Y+   VL+AC N+V    GK+IH   +K+
Sbjct: 316 MISRYAQSNQNEQAFELFLRLMRSSVL-PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 374

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D+FV  +L+  Y +    + + K+F  +   +  SWN ++ G+ QSG   EAL + 
Sbjct: 375 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 434

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM+   +    +T +S+L  CA + +I     IH  I K     +  + N+LI+ YAK 
Sbjct: 435 CEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKC 494

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +R AL+VF  +MERD++SWN+II+ Y        A   F  M ++ ++ + +T V+L 
Sbjct: 495 GYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALL 554

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----AVVDMYAKLGIINSACAVFEGL 292
           S+      C      HG  +     ++  I  +      +V +  + G +N A      +
Sbjct: 555 SVC-----CSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDI 609

Query: 293 P-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALR 350
           P     + W  L++    +   + A+  F   E+  EI P ++ TYV +   Y+  G+L 
Sbjct: 610 PSAPSAMVWRALLSSCIIH--KNVALGRFS-AEKILEIEPQDETTYVLLSNMYAAAGSLD 666

Query: 351 Q 351
           Q
Sbjct: 667 Q 667



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 37/358 (10%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHAL 184
           +D    A  L  C    +   G  +H ++V+ G     +LF +N L+NMY K G +  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           R+FD+M ER++VS+ +++ A+ Q  D   A   F  ++  G + +   L ++  +   ++
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
               +  VH    + G    +  +G+ ++D Y+   +++ A  VF G+  KD + W  ++
Sbjct: 177 AAGLAGGVHSCAWKLG-HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
           + Y++N     A   F+  + C+ +                +   RQG  IH   IK   
Sbjct: 236 SCYSENDCPENA---FRCAQSCSLLA---------------ISCARQG--IHGCAIKTLN 275

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             +  V   L+DMY KCG I DA   F  +P    +  + +IS +    Q ++A   F +
Sbjct: 276 DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLR 335

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG--IKPHLKHYGCMVDLF 480
           ++   V P+  +  S+L AC+            +M+Q +FG  I  H    G   DLF
Sbjct: 336 LMRSSVLPNEYSLSSVLQACT------------NMVQLDFGKQIHNHAIKIGHESDLF 381


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 344/606 (56%), Gaps = 5/606 (0%)

Query: 14  AVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLL 70
           A+  F +    + + P+ +T   V  A  NL D   GK+ H   +K G   DV+V +SLL
Sbjct: 101 AISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLL 160

Query: 71  HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI 130
           +MYC+ G    ARKLFD MP R++ SW  MISGY  S  A +A+++ + MR E    +  
Sbjct: 161 NMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEF 220

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            + S+L        + +G  +H   +K+GL   + V+N L+ MYAK G +  A+R F+  
Sbjct: 221 ALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFS 280

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            +++ ++W++++  Y Q  D   A   F  M  +G+ P   TLV + +  + L      +
Sbjct: 281 GDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGK 340

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H F  + G+ ++  ++ +AVVDMYAK G +  A   FE +   DV+ W ++ITGY QN
Sbjct: 341 QMHSFAFKLGFGLQLYVL-SAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQN 399

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G     + ++  M+    + PN+ T  S+L A S + AL QG ++HAR+IK     +V +
Sbjct: 400 GDYEGGLNLYGKMQ-MERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPI 458

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            + L  MY KCG +DD   +F+++P    + WNA+IS    +G G+KAL  F +ML EG+
Sbjct: 459 GSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGI 518

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +PD +TFV+LL+ACSH GLV  G  YF MM +EF I P ++HY CMVD+  RAG L  A 
Sbjct: 519 KPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAK 578

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            FI++  V     +W  LLGAC+ H N ELG  A ++L E+ S     YVL+S+IY  +G
Sbjct: 579 EFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALG 638

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
             E V+ VR + + RG+ K PG S IE+   V +F  G+  HP+ ++I  EL  LT  M 
Sbjct: 639 DRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRLELELLTKLMI 698

Query: 611 SLGYVP 616
             GY P
Sbjct: 699 DEGYQP 704



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 214/406 (52%), Gaps = 20/406 (4%)

Query: 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVV 196
           C  + NIL G  +H  I+K G   +++V+N  +N+YAK   + HAL +FD +   ++D V
Sbjct: 21  CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDV 80

Query: 197 SWNSIIAAYEQSNDPIT---AHGFFTTMQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           SWNS+I A+ Q++   +   A   F  M +A  + P+  TL  + S  + L+D    +  
Sbjct: 81  SWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQA 140

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H   ++ G    DV +G+++++MY K G +  A  +F+ +P ++ +SW T+I+GYA + +
Sbjct: 141 HSVAVKTGC-SGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDI 199

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372
           A +A+EVF++M    EI  N+    S+L A +    +  G ++H+  IKN L   V VA 
Sbjct: 200 ADKAVEVFELMRREEEIQ-NEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVAN 258

Query: 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432
            LV MY KCG +DDA+  F      +S+ W+A+++ +   G  DKAL  F +M   GV P
Sbjct: 259 ALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLP 318

Query: 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492
              T V ++ ACS    V EG++  H    + G    L     +VD++ + G L  A   
Sbjct: 319 SEFTLVGVINACSDLCAVVEGKQ-MHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKG 377

Query: 493 IQNMPVRPDASIWGALL----------GACRIHGNMELGAVASDRL 528
            + +  +PD  +W +++          G   ++G M++  V  + L
Sbjct: 378 FECVQ-QPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNEL 422



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 252/490 (51%), Gaps = 18/490 (3%)

Query: 42  RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM--PVRDSGSWNA 99
           +N++ G+ +H  +LK G    ++V  + L++Y +    + A  LFD +    +D  SWN+
Sbjct: 25  KNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNS 84

Query: 100 MISGYCQSGNAVE---ALDILDE-MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155
           +I+ + Q+ ++     A+ +    MR   V  +  T+A +    +   ++++G   H   
Sbjct: 85  LINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVA 144

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215
           VK G   +++V ++L+NMY K G +  A ++FD+M ER+ VSW ++I+ Y  S+    A 
Sbjct: 145 VKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAV 204

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLND---CRNSRSVHGFIMRRGWFMEDVIIGNAV 272
             F  M++   + ++    +LTS+++ L         R VH   ++ G  +  V + NA+
Sbjct: 205 EVFELMRR---EEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNG-LLAIVSVANAL 260

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           V MYAK G ++ A   FE    K+ I+W+ ++TGYAQ G + +A+++F  M     + P+
Sbjct: 261 VTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSG-VLPS 319

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           + T V ++ A S + A+ +G ++H+   K      ++V + +VDMY KCG + DA   F 
Sbjct: 320 EFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFE 379

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            V +   V W +II+ +  +G  +  LN + +M  E V P+ +T  S+L ACS    + +
Sbjct: 380 CVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQ 439

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512
           G++  H    ++G K  +     +  ++ + G L   +     MP R D   W A++   
Sbjct: 440 GKQ-MHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSR-DVISWNAMISGL 497

Query: 513 RI--HGNMEL 520
               HGN  L
Sbjct: 498 SQNGHGNKAL 507


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 338/557 (60%), Gaps = 3/557 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H+ I+K GL  + F S++++   A   +  M +A  +F Q+ E     +N++I  Y  +
Sbjct: 51  VHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNN 110

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            +   A   +  M Q  ++PD  T   +    A+L   +    +HG + + G   +DV +
Sbjct: 111 MNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLG-LEDDVYV 169

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N++++MY K   I  +CA+F  +  K V SW+ +I  +A   +  E + +F+ M     
Sbjct: 170 QNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGC 229

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
               +   V++L A +H+GA   G   H  ++KN    +V V T L+DMY KCG +   +
Sbjct: 230 WRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGL 289

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            LF  + R + + ++ IIS  G+HG G +AL  F +M++EG+ PD +T+VS+L+ACSHSG
Sbjct: 290 CLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSG 349

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV EG   F  M+ E+ I+P ++HYGCMVDL GRAG L  A   +Q+MP++ +  +W +L
Sbjct: 350 LVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSL 409

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC++H N++LG +A++ LF + S N   Y+++SN+YA   +WE   ++R+   +RGL 
Sbjct: 410 LSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLI 469

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           +TPG+S +EV +KV  F + ++++ K   IY  +  +  +++  GY+PD S V+ DV+E+
Sbjct: 470 QTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEE 529

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK   L  HS++LAIAF +I +   S I+I +NLR+C DCH++TK +S I EREI VRD 
Sbjct: 530 EKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDR 589

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 590 NRFHHFKDGNCSCRDYW 606



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 209/413 (50%), Gaps = 23/413 (5%)

Query: 26  GLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVAR 83
            L+     +  ++K C++L + K++H  +LK G   D F ++S+L       +   + A 
Sbjct: 27  NLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYAC 86

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +F  +    +  +N MI GY  + N   A+ + ++M    V  D  T   +L  CAR  
Sbjct: 87  SIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLA 146

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            I  G+ IH ++ K GLE +++V N+LINMY K   +  +  +F +M ++ V SW++IIA
Sbjct: 147 VIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIA 206

Query: 204 AYEQSNDPITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A+            F  M + G  + +   LV++ S    L      R  HG +++    
Sbjct: 207 AHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITE 266

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-Q 321
           + +V +  +++DMY K G +     +F+ +  K+ +S++ +I+G   +G   +A+++F +
Sbjct: 267 L-NVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSE 325

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT------CLV 375
           M+EE   + P+  TYVS+L A SH G + +G+ +  +     + F+  +        C+V
Sbjct: 326 MVEE--GLEPDDVTYVSVLSACSHSGLVDEGLDLFDK-----MKFEYRIEPTMQHYGCMV 378

Query: 376 DMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ---GD-KALNFFR 423
           D+ G+ G +++A  L   +P +++ V W +++S   +H     G+  A N FR
Sbjct: 379 DLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFR 431



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 154/318 (48%), Gaps = 20/318 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  YV       A+   Y   L   + PD +T+P VLKAC  L    +G +IH  V KL
Sbjct: 103 MIRGYVNNMNFENAI-YLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKL 161

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DV+V  SL++MY +     ++  +F  M  +   SW+A+I+ +       E L + 
Sbjct: 162 GLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALF 221

Query: 118 DEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           ++M  EG    +   + ++L  C        G   H  ++K+  E N+ V  +L++MY K
Sbjct: 222 EDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVK 281

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G ++  L +F  M  ++ +S++ II+          A   F+ M + G++PD +T VS+
Sbjct: 282 CGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSV 341

Query: 237 TSIVAQLNDCRNSRSVHGFI-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFE 290
                 L+ C +S  V   +     M+  + +E  +     +VD+  + G++  A  + +
Sbjct: 342 ------LSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQ 395

Query: 291 GLPVK--DVISWNTLITG 306
            +P+K  DV+ W +L++ 
Sbjct: 396 SMPIKANDVL-WRSLLSA 412


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/637 (37%), Positives = 356/637 (55%), Gaps = 7/637 (1%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           +LH Y +      A  LF  +P +D  SWN++I G    G+ V A  + DEM    V   
Sbjct: 92  MLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSW 151

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
              V  +L +    +         L+     ++ ++   N +I+ Y   G +  AL++F 
Sbjct: 152 TTLVDGLLRLGIVQEAET------LFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFC 205

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
           QM  RDV+SW+S+IA  + +     A   F  M  +G+      LV   S  A++   R 
Sbjct: 206 QMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRV 265

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
              +H  + + G +  D  +  ++V  YA    + +AC VF  +  K V+ W  L+TGY 
Sbjct: 266 GIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYG 325

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            N    EA+EVF  M   + + PN+ ++ S L +   +  + +G  IHA  +K  L    
Sbjct: 326 LNDKHREALEVFGEMMRIDVV-PNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGG 384

Query: 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428
           +V   LV MY KCG + DA+ +F  +   + V WN++I     HG G  AL  F QML E
Sbjct: 385 YVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLRE 444

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
           GV PD IT   LL+ACSHSG++ + + +F    ++  +   ++HY  MVD+ GR G L  
Sbjct: 445 GVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEE 504

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A   + +MP++ ++ +W ALL ACR H N++L   A++++FE++ +    YVL+SN+YA+
Sbjct: 505 AEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYAS 564

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
             +W  V  +R   +  G+ K PG S + +  +   F + +R+HP  EKIY +L  L  K
Sbjct: 565 SSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVK 624

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           +K LGYVPD+ F L DVE ++KE +L+ HSERLAIAFG++S+   S I + KNLRVCGDC
Sbjct: 625 LKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDC 684

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           HN  K +++I +REI+VRDS+RFH FK+GICSCGDYW
Sbjct: 685 HNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGDYW 721



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 233/511 (45%), Gaps = 57/511 (11%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC------------------R 42
           M+  Y +  RL EA+D F +         D  ++  ++K C                  R
Sbjct: 92  MLHAYAQNHRLREAIDLFRRIPF-----KDVVSWNSIIKGCLHCGDIVTARKLFDEMPRR 146

Query: 43  NLVDGKKIHCSVLKLG--------------FEWDVFVAASLLHMYCRFGLANVARKLFDD 88
            +V    +   +L+LG               + DV    +++H YC  G  + A +LF  
Sbjct: 147 TVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQ 206

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 148
           MP RD  SW++MI+G   +G + +AL +  +M   GV +    +   L   A+      G
Sbjct: 207 MPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVG 266

Query: 149 LLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           + IH  + K G   F+ FVS +L+  YA    M  A RVF +++ + VV W +++  Y  
Sbjct: 267 IQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGL 326

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
           ++    A   F  M +  + P+  +  S  +    L D    + +H   ++ G       
Sbjct: 327 NDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMG-LESGGY 385

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEEC 326
           +G ++V MY+K G ++ A  VF+G+  K+V+SWN++I G AQ+G    A+ +F QM+ E 
Sbjct: 386 VGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLRE- 444

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVI--KNCLCFDVFVATCLVDMYGKCGRI 384
             ++P+  T   +L A SH G L Q  +   R    K  +   +   T +VD+ G+CG +
Sbjct: 445 -GVDPDGITVTGLLSACSHSGML-QKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGEL 502

Query: 385 DDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           ++A ++   +P +++S+ W A++S    H   D A     Q+ +  + PD      LL  
Sbjct: 503 EEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFE--IEPDCSAAYVLL-- 558

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
              S L +   R+     E   I+  +KH G
Sbjct: 559 ---SNLYASSSRW----AEVALIRRKMKHNG 582



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 158/322 (49%), Gaps = 7/322 (2%)

Query: 47  GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G +IHCSV KLG + +D FV+ASL+  Y        A ++F ++  +    W A+++GY 
Sbjct: 266 GIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYG 325

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
            +    EAL++  EM    V  +  +  S L  C   ++I  G +IH   VK GLE   +
Sbjct: 326 LNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGY 385

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225
           V  +L+ MY+K G +  A+ VF  + E++VVSWNS+I    Q    + A   F  M + G
Sbjct: 386 VGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREG 445

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           + PD +T+  L S  +     + +R    +  ++      +    ++VD+  + G +  A
Sbjct: 446 VDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEA 505

Query: 286 CAVFEGLPVK-DVISWNTLITGYAQNG---LASEAI-EVFQMMEECNEINPNQGTYVSIL 340
            AV   +P+K + + W  L++   ++    LA  A  ++F++  +C+          +  
Sbjct: 506 EAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASS 565

Query: 341 PAYSHVGALRQGIKIHARVIKN 362
             ++ V  +R+ +K H  V+K 
Sbjct: 566 SRWAEVALIRRKMK-HNGVVKK 586



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 24/173 (13%)

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-------- 333
           ++ A A+F+ +P   V  +  ++  YAQN    EAI++F+ +   + ++ N         
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHC 130

Query: 334 GTYVSILPAYSHV-------------GALRQGIKIHARVI---KNCLCFDVFVATCLVDM 377
           G  V+    +  +             G LR GI   A  +      +  DV     ++  
Sbjct: 131 GDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHG 190

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
           Y   GR+DDA+ LF Q+P    + W+++I+    +G+ ++AL  FR M+  GV
Sbjct: 191 YCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGV 243


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/587 (40%), Positives = 350/587 (59%), Gaps = 11/587 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLR-PDFYTFPPVLKACRNLV---DGKKIHCSVLK 56
           MI +Y   G   +A+  F Q  L SG R PD YT+P V+KAC + +    G  IH   + 
Sbjct: 93  MIRMYTNSGLSYDALGLFVQM-LASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVM 151

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            GF+ D FV  SL+ MY   G   VAR++FD M  R   SWN MI+GY ++G   EAL +
Sbjct: 152 SGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMV 211

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            D M  +G+  D  TV S+LPVC+    +  G  +H  +    L  ++ V N+L++MYAK
Sbjct: 212 FDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAK 271

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G M  A  +F +M +RDVVSW +++  Y  + D  +A      MQ   ++P+ +TL S+
Sbjct: 272 CGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASV 331

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L   ++ R +HG+ +R+     +VI+  A++DMYAK   +N +  VF     + 
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQK-LESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQR 390

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              WN +I+G   NGL+ +AIE+F QM+ E   ++PN  T  S+LPAY+ +  L+Q   +
Sbjct: 391 TAPWNAIISGCIHNGLSRKAIELFKQMLMEA--VDPNDATLNSLLPAYAFLTDLQQARNM 448

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHG 413
           H  +I++     + VAT L+D+Y KCG ++ A ++F  +P+     + W+AII+ +G+HG
Sbjct: 449 HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G+ A++ F QM+  GV+P+ ITF S+L ACSH+GLV EG   F  M E+  +     HY
Sbjct: 509 HGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY 568

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            C++DL GRAG L  A+  I+ M  RP+ ++WGALLG+C IH N+ELG VA+  LFE++ 
Sbjct: 569 TCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEP 628

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
            N G YVL++NIY+ VG+W   + VR +  + GL+KTP  S IEV N
Sbjct: 629 GNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 164/507 (32%), Positives = 258/507 (50%), Gaps = 15/507 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGF---EWDVFVAASLLHMYCRFGLANVARKLFD 87
           +  +L+ C   +++ + K+IH   + LG     +   + +SL   Y  FG A  ARKLFD
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFD 80

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNIL 146
           ++      SWNAMI  Y  SG + +AL +  +M   G    D  T   ++  C   D +L
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG--DYLL 138

Query: 147 S--GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
              G LIH   V  G + + FV N+L+ MY   G M  A RVFD M ER +VSWN++I  
Sbjct: 139 PEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMING 198

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y ++     A   F  M   GI+PD  T+VS+  + + L +    R VH  +  +    E
Sbjct: 199 YFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN-LGE 257

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D+ + N+++DMYAK G ++ A  +F  +  +DV+SW T++ GY  NG A  A+ + QMM 
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM- 316

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   + PN  T  S+L A + + +L+ G  +H   I+  L  +V V T L+DMY KC  +
Sbjct: 317 QFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNV 376

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + +  +F +  +  + PWNAIIS    +G   KA+  F+QML E V P+  T  SLL A 
Sbjct: 377 NLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR-PDAS 503
           +    + +  R  H      G    ++    ++D++ + G L  AHN    +P +  D  
Sbjct: 437 AFLTDLQQA-RNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDII 495

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE 530
            W A++    +HG+ E      D++ +
Sbjct: 496 TWSAIIAGYGMHGHGETAISLFDQMVQ 522


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 348/588 (59%), Gaps = 21/588 (3%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           IL    +  N+ +   +H  ++  GL F  +  ++L+N  +KF    +A  +F+ +    
Sbjct: 8   ILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFNHIPNPT 66

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFT----TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           +  +N++I++    +D I  H  F+     +    +QP+  T  SL    A     ++  
Sbjct: 67  LFLYNTLISSLTHHSDQI--HLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGP 124

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            +H  +++      D  + N++++ YAK G +  +  +F+ +   D+ +WNT++  YAQ+
Sbjct: 125 PLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQS 184

Query: 311 G-------------LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
                         ++ EA+ +F  M+  ++I PN+ T V+++ A S++GAL QG   H 
Sbjct: 185 ASHVSYSTSFEDADMSLEALHLFCDMQ-LSQIKPNEVTLVALISACSNLGALSQGAWAHG 243

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++N L  + FV T LVDMY KCG ++ A  LF ++    +  +NA+I    +HG G++
Sbjct: 244 YVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQ 303

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  +R M  E + PD  T V  + ACSH GLV EG   F  M+   G++P L+HYGC++
Sbjct: 304 ALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLI 363

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GRAG L  A   +Q+MP++P+A +W +LLGA ++HGN+E+G  A   L E++ E  G
Sbjct: 364 DLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSG 423

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA++G+W  V  VR L +D G+ K PG+S +E+N  +  F TG++ HP  ++
Sbjct: 424 NYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKE 483

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY ++  +  ++   G+ P  S VL DVEE++KE  L+ HSERLAIAF +I+S    PI+
Sbjct: 484 IYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIR 543

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVCGDCH  TK IS   +R+IIVRD NRFHHFKDG CSC DYW
Sbjct: 544 IIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 208/413 (50%), Gaps = 26/413 (6%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           L+ C NL   K++H  +L  G  +  +  + LL+   +F  +  A  +F+ +P      +
Sbjct: 12  LQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFA-STYAFTIFNHIPNPTLFLY 70

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYI 155
           N +IS      + +     L    L   ++ P   T  S+   CA    +  G  +H ++
Sbjct: 71  NTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHV 130

Query: 156 VKH-GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT- 213
           +K     ++ FV N+L+N YAK+G +  +  +FDQ+ E D+ +WN+++AAY QS   ++ 
Sbjct: 131 LKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSY 190

Query: 214 ------------AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
                       A   F  MQ + I+P+ +TLV+L S  + L         HG+++R   
Sbjct: 191 STSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNL 250

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + +  +G A+VDMY+K G +N AC +F+ L  +D   +N +I G+A +G  ++A+E+++
Sbjct: 251 KL-NRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYR 309

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT--CLVDMYG 379
            M +  ++ P+  T V  + A SH G + +G++I    +K     +  +    CL+D+ G
Sbjct: 310 NM-KLEDLVPDGATIVVTMFACSHGGLVEEGLEIF-ESMKGVHGMEPKLEHYGCLIDLLG 367

Query: 380 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ---GDKALNFFRQMLDE 428
           + GR+ +A      +P + +++ W +++    +HG    G+ AL    ++  E
Sbjct: 368 RAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPE 420



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 171/358 (47%), Gaps = 39/358 (10%)

Query: 18  FYQFTLT-SGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLK-LGFEWDVFVAASLLHM 72
            Y   LT   L+P+ +TFP + KAC +   L  G  +H  VLK L   +D FV  SLL+ 
Sbjct: 90  LYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNF 149

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV-------------EALDILDE 119
           Y ++G   V+R LFD +   D  +WN M++ Y QS + V             EAL +  +
Sbjct: 150 YAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCD 209

Query: 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179
           M+L  +  + +T+ +++  C+    +  G   H Y++++ L+ N FV   L++MY+K G 
Sbjct: 210 MQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGC 269

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV----- 234
           +  A ++FD++ +RD   +N++I  +        A   +  M+   + PD  T+V     
Sbjct: 270 LNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFA 329

Query: 235 -SLTSIVAQ-LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 292
            S   +V + L    + + VHG   +   +         ++D+  + G +  A    + +
Sbjct: 330 CSHGGLVEEGLEIFESMKGVHGMEPKLEHY-------GCLIDLLGRAGRLKEAEERLQDM 382

Query: 293 PVK-DVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINP-NQGTYVSILPAYSHVG 347
           P+K + I W +L+     +G     +E+ +  ++   E+ P   G YV +   Y+ +G
Sbjct: 383 PMKPNAILWRSLLGAAKLHG----NLEMGEAALKHLIELEPETSGNYVLLSNMYASIG 436


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/587 (40%), Positives = 350/587 (59%), Gaps = 11/587 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLR-PDFYTFPPVLKACRNLV---DGKKIHCSVLK 56
           MI +Y   G   +A+  F Q  L SG R PD YT+P V+KAC + +    G  IH   + 
Sbjct: 93  MIRMYTNSGLSYDALGLFVQM-LASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVM 151

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
            GF+ D FV  SL+ MY   G   VAR++FD M  R   SWN MI+GY ++G   EAL +
Sbjct: 152 SGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMV 211

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            D M  +G+  D  TV S+LPVC+    +  G  +H  +    L  ++ V N+L++MYAK
Sbjct: 212 FDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAK 271

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G M  A  +F +M +RDVVSW +++  Y  + D  +A      MQ   ++P+ +TL S+
Sbjct: 272 CGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASV 331

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            S  A L   ++ R +HG+ +R+     +VI+  A++DMYAK   +N +  VF     + 
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQK-LESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQR 390

Query: 297 VISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
              WN +I+G   NGL+ +AIE+F QM+ E   ++PN  T  S+LPAY+ +  L+Q   +
Sbjct: 391 TAPWNAIISGCIHNGLSRKAIELFKQMLMEA--VDPNDATLNSLLPAYAFLTDLQQARNM 448

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHG 413
           H  +I++     + VAT L+D+Y KCG ++ A ++F  +P+     + W+AII+ +G+HG
Sbjct: 449 HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHG 508

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
            G+ A++ F QM+  GV+P+ ITF S+L ACSH+GLV EG   F  M E+  +     HY
Sbjct: 509 HGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY 568

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            C++DL GRAG L  A+  I+ M  RP+ ++WGALLG+C IH N+ELG VA+  LFE++ 
Sbjct: 569 TCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEP 628

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN 580
            N G YVL++NIY+ VG+W   + VR +  + GL+KTP  S IEV N
Sbjct: 629 GNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 163/507 (32%), Positives = 257/507 (50%), Gaps = 15/507 (2%)

Query: 34  FPPVLKAC---RNLVDGKKIHCSVLKLGF---EWDVFVAASLLHMYCRFGLANVARKLFD 87
           +  +L+ C   +++ + K+IH   + LG     +   + +SL   Y   G A  ARKLFD
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFD 80

Query: 88  DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNIL 146
           ++      SWNAMI  Y  SG + +AL +  +M   G    D  T   ++  C   D +L
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG--DYLL 138

Query: 147 S--GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204
              G LIH   V  G + + FV N+L+ MY   G M  A RVFD M ER +VSWN++I  
Sbjct: 139 PEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMING 198

Query: 205 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 264
           Y ++     A   F  M   GI+PD  T+VS+  + + L +    R VH  +  +    E
Sbjct: 199 YFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN-LGE 257

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           D+ + N+++DMYAK G ++ A  +F  +  +DV+SW T++ GY  NG A  A+ + QMM 
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM- 316

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +   + PN  T  S+L A + + +L+ G  +H   I+  L  +V V T L+DMY KC  +
Sbjct: 317 QFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNV 376

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           + +  +F +  +  + PWNAIIS    +G   KA+  F+QML E V P+  T  SLL A 
Sbjct: 377 NLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR-PDAS 503
           +    + +  R  H      G    ++    ++D++ + G L  AHN    +P +  D  
Sbjct: 437 AFLTDLQQA-RNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDII 495

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE 530
            W A++    +HG+ E      D++ +
Sbjct: 496 TWSAIIAGYGMHGHGETAISLFDQMVQ 522


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/657 (36%), Positives = 371/657 (56%), Gaps = 10/657 (1%)

Query: 47   GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            G K+H      GF   V VA +LL MY +    + A ++F  M  +D  SW++MI+G+C 
Sbjct: 418  GIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCF 477

Query: 107  SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
            +  + +AL     M L  V  + +T  + L  CA +  + SG  IH Y+++ G+    +V
Sbjct: 478  NHRSFDALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 167  SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
             N L+++Y K G   +A   F    E+DVVSWN +++ +        A   F  M    +
Sbjct: 537  PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSL 596

Query: 227  QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
                +   S  +  A L        +H     +G F+  V++ NA+++MYAK   I+ A 
Sbjct: 597  --GRMGACSALAACACLGRLDVGIKLHELAQNKG-FIRYVVVANALLEMYAKSKHIDKAI 653

Query: 287  AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
             VF+ +  KDV+SW+++I G+  N  + +A+  F+ M     + PN  T+++ L A +  
Sbjct: 654  EVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM--LGHVKPNSVTFIAALSACAAT 711

Query: 347  GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
            GALR G +IHA V++  +  + +V   L+D+Y KCG+   A + F        V WN ++
Sbjct: 712  GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 771

Query: 407  SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
            S    HG GD AL+ F QM++ G  PD +TFV L+ ACS +G+V +G   FH   E+F I
Sbjct: 772  SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKFSI 830

Query: 467  KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
             P+LKHY CMVDL  R G L  A+N I  MP++PDA++WGALL  CRIH ++ELG +A+ 
Sbjct: 831  VPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 890

Query: 527  RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
             + E++  +V Y+VL+ ++Y + GKW  V  VR   R++GL++  G S +EV      F 
Sbjct: 891  VILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFL 950

Query: 587  TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
            T + +HP+ ++I   L  +  +MK+ G+ P +S   ++V ED+   IL  HSERLA+AFG
Sbjct: 951  TDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDD---ILCGHSERLAVAFG 1007

Query: 647  IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703
            +I++ P + I + KN   C  CH   K IS+I  REI VRD+ + H FKDG CSCGD
Sbjct: 1008 LINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 1064



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 232/429 (54%), Gaps = 7/429 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+  Y + G L EA+D +Y+  L +G+RPD YTFP VL+ C  + D   G+++H  VL+ 
Sbjct: 168 MVGGYGKVGFLEEALDLYYRM-LWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRF 226

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +V V  +L+ MY + G    ARK+FD M + D  SWNAMI+G+ ++      L++ 
Sbjct: 227 GFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELF 286

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M    V  + +T+ S+         +     +H + VK G   ++   N+LI MY   
Sbjct: 287 LTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSL 346

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A ++F +M  +D +SW ++I+ YE++  P  A   +  M+   + PD +T+ S  
Sbjct: 347 GRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASAL 406

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  A L        +H     +G F+  V++ NA+++MYAK   I+ A  VF+ +  KDV
Sbjct: 407 AACACLGRLDVGIKLHELAQNKG-FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDV 465

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SW+++I G+  N  + +A+  F+ M     + PN  T+++ L A +  GALR G +IHA
Sbjct: 466 VSWSSMIAGFCFNHRSFDALYYFRYM--LGHVKPNSVTFIAALSACAATGALRSGKEIHA 523

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V++  +  + +V   L+D+Y KCG+   A + F        V WN ++S    HG GD 
Sbjct: 524 YVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDI 583

Query: 418 ALNFFRQML 426
           AL+ F QM+
Sbjct: 584 ALSLFNQMM 592



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 235/457 (51%), Gaps = 8/457 (1%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           ++L M  RFG    A ++F  MP RD  SWN M+ GY + G   EALD+   M   G+  
Sbjct: 136 AMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRP 195

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
           D  T   +L  C    +   G  +H ++++ G    + V N L+ MYAK G +  A +VF
Sbjct: 196 DVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVF 255

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           D M   D +SWN++IA + ++++       F TM +  +QP+L+T+ S+T     L++  
Sbjct: 256 DGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVG 315

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 307
            ++ +HGF ++RG F  DV   N+++ MY  LG +  A  +F  +  KD +SW  +I+GY
Sbjct: 316 FAKEMHGFAVKRG-FAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 308 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 367
            +NG   +A+EV+ +ME  N +NP+  T  S L A + +G L  GIK+H           
Sbjct: 375 EKNGFPDKALEVYALMELHN-VNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRY 433

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
           V VA  L++MY K   ID A+ +F  +     V W+++I+    + +   AL +FR ML 
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLG 493

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487
             V+P+ +TF++ L+AC+ +G +  G+   H      GI         ++DL+ + G   
Sbjct: 494 H-VKPNSVTFIAALSACAATGALRSGKE-IHAYVLRCGIGSEGYVPNALLDLYVKCGQTS 551

Query: 488 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
            A     ++    D   W  +L     HG   LG +A
Sbjct: 552 YAWAQF-SVHSEKDVVSWNIMLSGFVAHG---LGDIA 584



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 155/513 (30%), Positives = 249/513 (48%), Gaps = 30/513 (5%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L + ++P+  T   V  A   L +    K++H   +K GF  DV    SL+ MY   G  
Sbjct: 290 LENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRM 349

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             A K+F  M  +D+ SW AMISGY ++G   +AL++   M L  V+ D +T+AS L  C
Sbjct: 350 GDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAAC 409

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
           A    +  G+ +H      G    + V+N L+ MYAK   +  A+ VF  M E+DVVSW+
Sbjct: 410 ACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWS 469

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
           S+IA +  ++    A  +F  M    ++P+ +T ++  S  A     R+ + +H +++R 
Sbjct: 470 SMIAGFCFNHRSFDALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRC 528

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G   E   + NA++D+Y K G  + A A F     KDV+SWN +++G+  +GL   A+ +
Sbjct: 529 GIGSEG-YVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSL 587

Query: 320 FQMMEECNEINPNQGTYVSI--------LPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           F           NQ  Y S+        L A + +G L  GIK+H           V VA
Sbjct: 588 F-----------NQMMYTSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVA 636

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             L++MY K   ID A+ +F  +     V W+++I+    + +   AL +FR ML   V+
Sbjct: 637 NALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VK 695

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           P+ +TF++ L+AC+ +G +  G+   H      GI         ++DL+ + G    A  
Sbjct: 696 PNSVTFIAALSACAATGALRSGKE-IHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWA 754

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVA 524
              ++    D   W  +L     HG   LG +A
Sbjct: 755 QF-SVHSEKDVVSWNIMLSGFVAHG---LGDIA 783



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 200/419 (47%), Gaps = 8/419 (1%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
           +A +   C  G   +AL +L+         D     ++  +C     + +G+        
Sbjct: 68  SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 217
               F L + N +++M  +FG + HA RVF +M ERDV SWN ++  Y +      A   
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277
           +  M  AG++PD+ T   +      + D R  R VH  ++R G F ++V + NA+V MYA
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG-FGDEVDVLNALVTMYA 243

Query: 278 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 337
           K G I +A  VF+G+ + D ISWN +I G+ +N      +E+F  M E NE+ PN  T  
Sbjct: 244 KCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLE-NEVQPNLMTIT 302

Query: 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397
           S+  A   +  +    ++H   +K     DV     L+ MY   GR+ DA  +F ++   
Sbjct: 303 SVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK 362

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457
            ++ W A+IS +  +G  DKAL  +  M    V PD +T  S L AC+  G +  G +  
Sbjct: 363 DAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIK-L 421

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIH 515
           H + +  G   ++     +++++ ++ H+  A    + M  + D   W +++ G C  H
Sbjct: 422 HELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNH 479


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/634 (34%), Positives = 356/634 (56%), Gaps = 6/634 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ YVR  R +E +   Y+  L  G+     TF    ++C  L     G ++H   LK 
Sbjct: 242 VIAGYVRNDRFTEGLK-LYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKT 300

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F +D  V  + L MY +      ARK+F+  P     S NA+I GY +    +EAL+I 
Sbjct: 301 NFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIF 360

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             ++   +  D I+++  L  C+     L G+ +H   VK GL+FN+ V+N +++MYAK 
Sbjct: 361 RSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKC 420

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD M  +D VSWN+IIAA+EQ+         F +M ++ ++PD  T  S+ 
Sbjct: 421 GALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVV 480

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A          VHG +++ G  + D  +G+A++DMY K G++  A  + E L  +  
Sbjct: 481 KACAGKKALNYGMEVHGRVIKSGMGL-DWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT 539

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++I+G++       A+  F  M +   I P+  TY ++L   +++  +  G +IH 
Sbjct: 540 VSWNSIISGFSSEKQGENALSYFSRMLQVGVI-PDNFTYATVLDICANLATVELGKQIHG 598

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L  DV++A+ +VDMY KCG + D+  +F + P+   V W+A+I  +  HG G+ 
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGED 658

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M  + V+P+H  F+S+L AC+H G V +G  YF  M+  +G+ P ++HY CMV
Sbjct: 659 AIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMV 718

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G +  A   I++MP   D  IW  LLG CR+ GN+E+   A++ L ++D ++  
Sbjct: 719 DLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSS 778

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SN+YA  G W  V ++RS  ++  LKK PG S I+V ++V  F  G++ HP+ E+
Sbjct: 779 AYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEE 838

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 631
           IY +   L  +MK  GYVP+    L D E DE++
Sbjct: 839 IYQQTHLLVDEMKWDGYVPEIDGFLLDEEVDEQD 872



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/539 (28%), Positives = 277/539 (51%), Gaps = 11/539 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           M+S Y++ G   ++++ F +  L   ++ D+ TF  VLKAC  + D   G ++HC  +++
Sbjct: 141 MLSCYLQNGFHRKSIEIFTKMRLLE-IQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQM 199

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV    +L+ MY      + A  +F +MP R+S  W+A+I+GY ++    E L + 
Sbjct: 200 GFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLY 259

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  EG+ +   T AS    CA       G  +H Y +K    ++  V    ++MYAK 
Sbjct: 260 KVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKC 319

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M  A +VF+        S N++I  Y + +  + A   F ++Q++ +  D ++L    
Sbjct: 320 DRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGAL 379

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + +        +HG  ++ G    ++ + N ++DMYAK G +  AC +F+ + +KD 
Sbjct: 380 TACSAIKGYLEGIQLHGLAVKCGLDF-NICVANTILDMYAKCGALMEACLIFDDMEIKDA 438

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I  + QN    E + +F  M   + + P+  T+ S++ A +   AL  G+++H 
Sbjct: 439 VSWNAIIAAHEQNEHVEETLALFVSMLR-STMEPDDYTFGSVVKACAGKKALNYGMEVHG 497

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           RVIK+ +  D FV + ++DMY KCG + +A  +  ++   ++V WN+IIS      QG+ 
Sbjct: 498 RVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL++F +ML  GV PD+ T+ ++L  C++   V  G++  H    +  +   +     +V
Sbjct: 558 ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQ-IHGQILKLQLHSDVYIASTIV 616

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           D++ + G++  +    +  P R D   W A++ A   HG   LG  A     E+  +NV
Sbjct: 617 DMYSKCGNMQDSRIMFEKAPKR-DYVTWSAMICAYAYHG---LGEDAIKLFEEMQLQNV 671



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 151/558 (27%), Positives = 259/558 (46%), Gaps = 43/558 (7%)

Query: 33  TFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR-------------- 75
           TF  + + C NL     GK+ H  +   GF   VFV+  LL  YC+              
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 76  ------------FGLANV-----ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
                       FG A V     A+ LFD MP RD  SWN+M+S Y Q+G   ++++I  
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           +MRL  +  D  T A +L  C   ++   GL +H   ++ G + ++     L++MY+   
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            + HA  +F +M ER+ V W+++IA Y +++        +  M   G+     T  S   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A L+       +H + ++   F  D I+G A +DMYAK   +  A  VF   P     
Sbjct: 280 SCAGLSAFELGTQLHAYALKTN-FGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQ 338

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           S N LI GYA+     EA+E+F+ +++ + ++ ++ +    L A S +    +GI++H  
Sbjct: 339 SHNALIVGYARQDQVLEALEIFRSLQK-SYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  L F++ VA  ++DMY KCG + +A  +F  +    +V WNAII+ H  +   ++ 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEET 457

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMV 477
           L  F  ML   + PD  TF S++ AC+    ++ G   +  +++   G+   +     ++
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG--SAII 515

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD--SEN 535
           D++ + G L  A    + +  R   S W +++         E       R+ +V    +N
Sbjct: 516 DMYCKCGMLVEAEKIHERLEERTTVS-WNSIISGFSSEKQGENALSYFSRMLQVGVIPDN 574

Query: 536 VGYYVLMSNIYANVGKWE 553
             Y  ++ +I AN+   E
Sbjct: 575 FTYATVL-DICANLATVE 591



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 191/419 (45%), Gaps = 38/419 (9%)

Query: 127 MDP---ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           M+P   +T + I   C+    I  G   H  I   G    +FVSN L+  Y K   + +A
Sbjct: 33  MNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYA 92

Query: 184 LRVFDQMMERDVVSWNSIIAAYE---------------QSNDPIT---------AHGF-- 217
             VFD+M +RDV+SWN++I  Y                   D ++          +GF  
Sbjct: 93  FNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHR 152

Query: 218 -----FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                FT M+   IQ D  T   +      + D      VH   ++ G F  DV+ G A+
Sbjct: 153 KSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMG-FDSDVVTGTAL 211

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           VDMY+    ++ A  +F  +P ++ + W+ +I GY +N   +E ++++++M +   +  +
Sbjct: 212 VDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLD-EGMGVS 270

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           Q T+ S   + + + A   G ++HA  +K    +D  V T  +DMY KC R+ DA  +F 
Sbjct: 271 QATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFN 330

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
             P  +    NA+I  +    Q  +AL  FR +    +  D I+    LTACS      E
Sbjct: 331 TFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLE 390

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           G +  H +  + G+  ++     ++D++ + G L  A     +M ++ DA  W A++ A
Sbjct: 391 GIQ-LHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAA 447


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/570 (39%), Positives = 342/570 (60%), Gaps = 21/570 (3%)

Query: 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMM 191
           S++  C+ +  +     IH  +++ GL F+ F ++ LI   A   F  + +A +VFDQ+ 
Sbjct: 40  SLIDQCSETKQLKQ---IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
             ++ +WN++I AY  S++P  +   F  M  Q+   PD  T   L    ++L +    +
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           + HG +++      DV I N+++  YAK G +     VF   P +DV+SWN++IT + Q 
Sbjct: 157 AFHGMVIKV-LLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQG 215

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G   EA+E+FQ ME  N + PN  T V +L A +       G  +H+ + +N +   + +
Sbjct: 216 GCPEEALELFQEMETQN-VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTL 274

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG------------IHGQGDKA 418
           +  ++DMY KCG ++DA  LF ++P    V W  ++  +             +HG G  A
Sbjct: 275 SNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDA 334

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478
           +  F +M ++ V+P+ +TF ++L ACSH GLV EG+ +F+ M+  +G+ P +KHY CMVD
Sbjct: 335 IALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVD 394

Query: 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538
           + GRAG L  A   I+ MP+ P AS+WGALLGAC IH N+ L   A  +L E++  N G 
Sbjct: 395 ILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGA 454

Query: 539 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 598
           YVL+SNIYA  GKW+ V  +R L RD GLKK PG SSIEV+  V  F  G+ +HP  +KI
Sbjct: 455 YVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKI 514

Query: 599 YDELRNLTAKMKSLGYVPDKSFVLQDV-EEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           Y +L  + A+++++GYVP+KS +LQ V EED KE  L  HSE+LAIAFG+IS+    PI+
Sbjct: 515 YAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIR 574

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRD 687
           I KNLRVCGDCH+  K +S++ +REI++RD
Sbjct: 575 IVKNLRVCGDCHSVAKLVSKLYDREILLRD 604



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 203/396 (51%), Gaps = 25/396 (6%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDS 94
           ++  C      K+IH  +L+ G  +D F A+ L+       F   + A+++FD +P  + 
Sbjct: 41  LIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNL 100

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHL 153
            +WN +I  Y  S N  ++L I   M  +     D  T   ++   +  + + +G   H 
Sbjct: 101 YTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHG 160

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
            ++K  L  ++F+ N+LI+ YAK G +    RVF     RDVVSWNS+I A+ Q   P  
Sbjct: 161 MVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEE 220

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M+   ++P+ +T+V + S  A+ +D    R VH +I  R    E + + NA++
Sbjct: 221 ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI-ERNRIXESLTLSNAML 279

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ-------NGLA-----SEAIEVFQ 321
           DMY K G +  A  +F+ +P KD++SW T++ GYA+        GLA      +AI +F 
Sbjct: 280 DMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFS 339

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDM 377
            M+E +++ PN  T+ +IL A SHVG + +G     ++    L + V        C+VD+
Sbjct: 340 KMQE-DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME---LVYGVLPGVKHYACMVDI 395

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIH 412
            G+ G +++A+ L  ++P + +   W A++    IH
Sbjct: 396 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 431



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 175/366 (47%), Gaps = 24/366 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I  Y       +++  F +    S   PD +TFP ++KA   L +   GK  H  V+K+
Sbjct: 106 LIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKV 165

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               DVF+  SL+H Y + G   +  ++F + P RD  SWN+MI+ + Q G   EAL++ 
Sbjct: 166 LLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELF 225

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EM  + V  + IT+  +L  CA+  +   G  +H YI ++ +  +L +SN +++MY K 
Sbjct: 226 QEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKC 285

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHG------------FFTTMQQAG 225
           G +  A R+FD+M E+D+VSW +++  Y +  +   A G             F+ MQ+  
Sbjct: 286 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDK 345

Query: 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 285
           ++P+ +T  ++    + +      R+    +      +  V     +VD+  + G++  A
Sbjct: 346 VKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEA 405

Query: 286 CAVFEGLPVKDVIS-WNTLITGYA--QNGLASEAIEVFQMMEECNEINP-NQGTYVSILP 341
             + E +P+    S W  L+      +N + +E     Q   +  E+ P N G YV +  
Sbjct: 406 VELIEKMPMAPAASVWGALLGACTIHENVVLAE-----QACSQLIELEPGNHGAYVLLSN 460

Query: 342 AYSHVG 347
            Y+  G
Sbjct: 461 IYAKAG 466


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 370/624 (59%), Gaps = 11/624 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK--ACRNLVD-GKKIHCSVLKL 57
           MI+ +V  G    A++ F +     G   D Y+F  +LK  AC   V+ G+++H  ++K+
Sbjct: 71  MIAGFVNLGNFETALE-FLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G+E +VF  ++LL MY +      A ++F  + +R+S +WNA+ISGY Q G+   A  +L
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLL 189

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D M LEGV +D  T A +L +    D       +H  IVKHGL  +  V N +I  Y++ 
Sbjct: 190 DCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSEC 249

Query: 178 GMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
           G +  A RVFD  +E RD+V+WNS++AAY  +N    A   F  MQ  G +PD+ T  S+
Sbjct: 250 GSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSV 309

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKL--GIINSACAVFEGLP 293
            S   + +     +S+HG +++RG  F+  V I N+++ MY K     ++ A  +FE L 
Sbjct: 310 ISAAFEGSHQGQGKSLHGLVIKRGLEFL--VPISNSLIAMYLKSHSKSMDEALNIFESLE 367

Query: 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353
            KD +SWN+++TG++Q+GL+ +A++ F+ M     +  +   + ++L + S +  L+ G 
Sbjct: 368 NKDHVSWNSILTGFSQSGLSEDALKFFENMRS-QYVVIDHYAFSAVLRSCSDLATLQLGQ 426

Query: 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413
           ++H  V+K+    + FVA+ L+ MY KCG I+DA   F   P+ SS+ WN++I  +  HG
Sbjct: 427 QVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHG 486

Query: 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473
           +G  AL+ F  M D  V+ DHITFV++LTACSH GLV EG  +   M+ ++GI P ++HY
Sbjct: 487 RGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHY 546

Query: 474 GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533
            CM+DL GRAG L  A   I+ MP  PDA +W  LLGACR  G++EL +  +  L E++ 
Sbjct: 547 ACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEP 606

Query: 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 593
           E    YVL+S+++ ++ +W     ++ L ++RG+KK PGWS IEV N+V  F   +R+HP
Sbjct: 607 EEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHP 666

Query: 594 KYEKIYDELRNLTAKMKSLGYVPD 617
             E+IY  L  L  +++ L YV +
Sbjct: 667 NCEEIYLRLGELMEEIRRLDYVAN 690



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 242/486 (49%), Gaps = 18/486 (3%)

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           HC  +K G    ++ A +++  Y + G   +A K+F +   RD+ SWN MI+G+   GN 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
             AL+ L  M+  G ++D  +  SIL   A    +  G  +H  +VK G E N+F  + L
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           ++MYAK   +  A  VF  +  R+ V+WN++I+ Y Q  D  TA      M+  G++ D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            T   L +++   +  + +  VH  I++ G    D  + NA++  Y++ G I  A  VF+
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 291 G-LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY---SHV 346
           G +  +D+++WN+++  Y  N    EA ++F  M+      P+  TY S++ A    SH 
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLG-FEPDIYTYTSVISAAFEGSHQ 319

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK--CGRIDDAMSLFYQVPRSSSVPWNA 404
           G   QG  +H  VIK  L F V ++  L+ MY K     +D+A+++F  +     V WN+
Sbjct: 320 G---QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNS 376

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
           I++     G  + AL FF  M  + V  DH  F ++L +CS    +  GQ+  H++  + 
Sbjct: 377 ILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQ-VHVLVLKS 435

Query: 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI-WGALLGACRIHGNMELGAV 523
           G +P+      ++ ++ + G +  A       P   D+SI W +L+     HG    G +
Sbjct: 436 GFEPNGFVASSLIFMYSKCGVIEDARKSFDATP--KDSSIAWNSLIFGYAQHGR---GKI 490

Query: 524 ASDRLF 529
           A D  F
Sbjct: 491 ALDLFF 496


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1111

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/484 (41%), Positives = 305/484 (63%), Gaps = 3/484 (0%)

Query: 223  QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
            + G +P+ +T +S+ S      +      +HG +M+ G  +E+V + NA++++Y K G +
Sbjct: 630  EVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSG-VLEEVKVVNALMNLYGKTGDL 688

Query: 283  NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             S+C +FE L VK+++SWNT+I  + QNGLA E +  F M      + P+Q T++++L  
Sbjct: 689  ISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVG-LKPDQATFLAVLRV 747

Query: 343  YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
               +G +R    IH  ++      +  + T L+D+Y K GR++D+ ++F ++    S+ W
Sbjct: 748  CEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAW 807

Query: 403  NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
             A+++ +  HG G  A+  F  M+  G+ PDH+TF  LL ACSHSGLV EG+ YF  M +
Sbjct: 808  TAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSK 867

Query: 463  EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
             + I+P L HY CMVDL GR+G L  A+  I+ MP+ P + +WGALLGACR++ + +LG 
Sbjct: 868  RYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGT 927

Query: 523  VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
             A+ RLFE++  +   Y+++SNIY+  G W+    +R+L + +GL +  G+S IE  NK+
Sbjct: 928  KAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKI 987

Query: 583  DIFYTGNRTHPKYEKIYDELRNLTAKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
              F  G+ +HP+ EKI  +L+ +  KMKS LG+     FVL DV+ED KE ++  HSE++
Sbjct: 988  HKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKI 1047

Query: 642  AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
            A+AFG++   P  PI I KNLR+CGDCH   K IS I +R II+RDS RFHHF +G CSC
Sbjct: 1048 AMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSC 1107

Query: 702  GDYW 705
             DYW
Sbjct: 1108 RDYW 1111



 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 332/551 (60%), Gaps = 35/551 (6%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLT 237
           + +A ++ D+  +  + + NS+I A+ +S  P  +  F++ +  +G  ++PD  T+  L 
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLV 123

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS------------- 284
                L        VHG  +RRG F  D  +   ++ +YA+LG ++S             
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRG-FDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDF 182

Query: 285 --------ACA----------VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                   ACA          +FEG+P KD I+WN +I+GYAQ G + EA+ +F +M+  
Sbjct: 183 VCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQ-L 241

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  N  + +S+L A + +GAL QG   H+ + +N +   V + T LVD+Y KCG +D 
Sbjct: 242 EGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDK 301

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           AM +F+ +   +   W++ ++   ++G G+K L  F  M  +GV P+ +TFVS+L  CS 
Sbjct: 302 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSV 361

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            G V EGQ++F  M+ EFGI+P L HYGC+VDL+ RAG L  A + IQ MP++  A++W 
Sbjct: 362 VGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWS 421

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           +LL A R++ N+ELG +AS ++ E+++ N G YVL+SNIYA+   W+ V  VR   + +G
Sbjct: 422 SLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKG 481

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           ++K PG S +EVN +V  F+ G+++HPKY +I    ++++ +++  GY  D + V+ D++
Sbjct: 482 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDID 541

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  L  HSE+ AIAFGI+S     PI+I KNLRVCGDCH  +  IS+I  REIIVR
Sbjct: 542 EEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 601

Query: 687 DSNRFHHFKDG 697
           D NRFHHFKDG
Sbjct: 602 DRNRFHHFKDG 612



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 192/386 (49%), Gaps = 13/386 (3%)

Query: 84  KLFD-DMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCAR 141
           K+F+ ++ VRD   ++    G    G   E L  +  MR E G   + +T  S++  C  
Sbjct: 592 KIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRM--MRSEVGFRPNEVTFLSMISACVH 649

Query: 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSI 201
             N   G+ IH  ++K G+   + V N L+N+Y K G +  + ++F+ +  +++VSWN++
Sbjct: 650 GGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTM 709

Query: 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           I  + Q+        +F   +  G++PD  T +++  +   +   R S+ +HG IM  G 
Sbjct: 710 IVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCG- 768

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
           F  +  I  A++D+YAKLG +  +  VF  +   D ++W  ++  YA +G   +AI+ F+
Sbjct: 769 FNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFE 828

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQG---IKIHARVIKNCLCFDVFVATCLVDMY 378
           +M     ++P+  T+  +L A SH G + +G    +  ++  +     D +  +C+VD+ 
Sbjct: 829 LMVHYG-LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHY--SCMVDLM 885

Query: 379 GKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           G+ G + DA  L  ++P   SS  W A++    ++          +++ +   R D   +
Sbjct: 886 GRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPR-DGRNY 944

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEE 463
           + L    S SGL  +  R  ++M+++
Sbjct: 945 IMLSNIYSASGLWKDASRIRNLMKQK 970



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 65/390 (16%)

Query: 18  FYQFTLTSG--LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           FY   L+SG  L+PD YT   +++AC  L     G ++H   ++ GF+ D  V   L+ +
Sbjct: 101 FYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISL 160

Query: 73  Y----------------------CRFGLANV---------ARKLFDDMPVRDSGSWNAMI 101
           Y                      CR  +            ARKLF+ MP +D  +WNAMI
Sbjct: 161 YAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMI 220

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SGY Q G + EAL++   M+LEGV ++ +++ S+L  C +   +  G   H YI ++ ++
Sbjct: 221 SGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIK 280

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             + +   L+++YAK G M  A+ VF  M E++V +W+S +     +         F+ M
Sbjct: 281 ITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLM 340

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI---------MRRGWFMEDVIIG-NA 271
           +Q G+ P+ +T VS+      L  C    SV GF+         MR  + +E  +     
Sbjct: 341 KQDGVTPNAVTFVSV------LRGC----SVVGFVDEGQKHFDSMRNEFGIEPQLDHYGC 390

Query: 272 VVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           +VD+YA+ G +  A ++ + +P+K     W++L+  +A     +  + V    +      
Sbjct: 391 LVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLL--HASRMYKNLELGVLASKKMLELET 448

Query: 331 PNQGTYVSILPAYS------HVGALRQGIK 354
            N G YV +   Y+      +V  +RQ +K
Sbjct: 449 SNHGAYVLLSNIYADSDDWDNVSHVRQSMK 478



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 151/338 (44%), Gaps = 14/338 (4%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G RP+  TF  ++ AC    N  +G  IH  V+K G   +V V  +L+++Y + G    +
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            KLF+D+ V++  SWN MI  + Q+G A E L   +  R  G+  D  T  ++L VC   
Sbjct: 692 CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +     IH  I+  G   N  ++  L+++YAK G +  +  VF ++   D ++W +++
Sbjct: 752 GVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAML 811

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           AAY        A   F  M   G+ PD +T   L +  +        R     + +R   
Sbjct: 812 AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRI 871

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVIS-WNTLITG---YAQNGLASEAIE 318
              +   + +VD+  + G++  A  + + +P++     W  L+     Y    L ++A  
Sbjct: 872 EPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKA-- 929

Query: 319 VFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKI 355
                +   E+ P  G  Y+ +   YS  G  +   +I
Sbjct: 930 ----AKRLFELEPRDGRNYIMLSNIYSASGLWKDASRI 963



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 3/207 (1%)

Query: 311 GLASEAIEVF-QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           G   +  EV  +MM       PN+ T++S++ A  H G   +G+ IH  V+K+ +  +V 
Sbjct: 614 GYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVK 673

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG 429
           V   L+++YGK G +  +  LF  +   + V WN +I  H  +G  ++ L +F      G
Sbjct: 674 VVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVG 733

Query: 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489
           ++PD  TF+++L  C   G+V   Q   H +    G   +      ++DL+ + G L  +
Sbjct: 734 LKPDQATFLAVLRVCEDIGVVRLSQG-IHGLIMFCGFNANTCITTALLDLYAKLGRLEDS 792

Query: 490 HNFIQNMPVRPDASIWGALLGACRIHG 516
                 +   PD+  W A+L A   HG
Sbjct: 793 STVFLEI-TSPDSMAWTAMLAAYATHG 818



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MI ++++ G L+E    ++  +   GL+PD  TF  VL+ C ++      + IH  ++  
Sbjct: 709 MIVIHLQNG-LAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFC 767

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  +  +  +LL +Y + G    +  +F ++   DS +W AM++ Y   G   +A+   
Sbjct: 768 GFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHF 827

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMYAK 176
           + M   G+S D +T   +L  C+ S  +  G      + K + +E  L   + ++++  +
Sbjct: 828 ELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGR 887

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G+++ A  +  +M ME     W +++ A
Sbjct: 888 SGLLQDAYGLIKEMPMEPSSGVWGALLGA 916


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/620 (36%), Positives = 366/620 (59%), Gaps = 8/620 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           M+   ++ G +  AV  F      SG  P+F T    L  C    +L+ G ++H   +K 
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMR-ASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKC 271

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E +V VA +LL MY +    + A +LF+ MP  D  +WN MISG  Q+G  VEA  + 
Sbjct: 272 GLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLF 331

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M+  G   D IT+ S+LP     + +  G  +H YIV++ +  ++F+ + L+++Y K 
Sbjct: 332 YDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKC 391

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +R A  ++D     DVV  +++I+ Y  +     A   F  + +  I+P+ +T+ S+ 
Sbjct: 392 RDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVL 451

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A +      + +HG+++R   +     + +A++DMYAK G ++ +  +F  +  KD 
Sbjct: 452 PGCASMAALPLGQQIHGYVLRNA-YERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDE 510

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIH 356
           ++WN++I+ ++QNG   EA+++F+ M  C E I  N  T  + L A + + A+  G +IH
Sbjct: 511 VTWNSMISSFSQNGKPQEALDLFRQM--CMEGIKYNNITISAALSACASLPAIYYGKEIH 568

Query: 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 416
              IK  +  D+F  + L+DMY KCG ++ A+ +F  +P  + V WN+IIS +G HG   
Sbjct: 569 GVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVK 628

Query: 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 476
           ++++    M +EG +PDH+TF++L++AC+H+GLV EG + F  M +++ I P ++H+ CM
Sbjct: 629 ESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACM 688

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           VDL+ R+G L  A  FI +MP +PDA IWGALL ACR+H N+EL  +AS  LF++D  N 
Sbjct: 689 VDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANS 748

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
           GYYVLMSNI A  G+W+GV +VR L +D  + K PG+S ++VNN   +F   +++HP+ E
Sbjct: 749 GYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESE 808

Query: 597 KIYDELRNLTAKMKSLGYVP 616
            IY  L+ L  +++  GYVP
Sbjct: 809 DIYTSLKTLLQELREEGYVP 828



 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/492 (34%), Positives = 280/492 (56%), Gaps = 9/492 (1%)

Query: 29  PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 85
           PD +T P V+K+C  L     G+ +H +   +G   DV+V ++L+ MY   GL   AR  
Sbjct: 139 PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDA 198

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD +P RD   WN M+ G  ++G+   A+ +   MR  G   +  T+A  L VCA   ++
Sbjct: 199 FDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADL 258

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
           LSG  +H   VK GLE  + V+N L+ MYAK   +  A R+F+ M + D+V+WN +I+  
Sbjct: 259 LSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGC 318

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            Q+   + A G F  MQ++G +PD +TLVSL   +  LN  +  + VHG+I+R    M D
Sbjct: 319 VQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM-D 377

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MME 324
           V + +A+VD+Y K   +  A  +++     DV+  +T+I+GY  NG++ EA+++F+ ++E
Sbjct: 378 VFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLE 437

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           +C  I PN  T  S+LP  + + AL  G +IH  V++N      +V + L+DMY KCGR+
Sbjct: 438 QC--IKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRL 495

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
           D +  +F ++ +   V WN++IS    +G+  +AL+ FRQM  EG++ ++IT  + L+AC
Sbjct: 496 DLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +    +  G+   H +  +  IK  +     ++D++ + G+L +A    + MP + + S 
Sbjct: 556 ASLPAIYYGKE-IHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVS- 613

Query: 505 WGALLGACRIHG 516
           W +++ A   HG
Sbjct: 614 WNSIISAYGAHG 625



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 247/493 (50%), Gaps = 17/493 (3%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEWD---VFVAASLLHMYCRFGLANVARKLFDDMP 90
           VL+ C    +L  G +IH   +  G   D   + +   LL MY        A  +F  +P
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 91  VRDSGS---WNAMISGYCQSGNAVEALDILDEM--RLEGVSMDPITVASILPVCARSDNI 145
              + S   WN +I G+  +G    A+    +M       S D  T+  ++  CA    +
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G L+H      GL  +++V + L+ MYA  G++ +A   FD + ERD V WN ++   
Sbjct: 158 SLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGC 217

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
            ++ D   A   F  M+ +G +P+  TL    S+ A   D  +   +H   ++ G    +
Sbjct: 218 IKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCG-LEPE 276

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V + N ++ MYAK   ++ A  +FE +P  D+++WN +I+G  QNGL  EA  +F  M+ 
Sbjct: 277 VAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQR 336

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
                P+  T VS+LPA + +  L+QG ++H  +++NC+  DVF+ + LVD+Y KC  + 
Sbjct: 337 SGA-RPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
            A +L+        V  + +IS + ++G  ++AL  FR +L++ ++P+ +T  S+L  C+
Sbjct: 396 MAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455

Query: 446 HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
               +  GQ+ + ++++  +  K +++    ++D++ + G L ++H     M  + D   
Sbjct: 456 SMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMSQK-DEVT 512

Query: 505 WGALLGACRIHGN 517
           W +++ +   +G 
Sbjct: 513 WNSMISSFSQNGK 525


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 356/614 (57%), Gaps = 6/614 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           ++S Y    R  EA+  F Q    S +RPDFYT+P VLKAC  L   + G++IH  +LK 
Sbjct: 76  LLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKT 135

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G  WDVFV +SL++MY +      A KLFD+ P RD G WNA+IS Y + G A  AL   
Sbjct: 136 GLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTF 195

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           D+M+  G   + +T   ++  C R  N+  G  +H  +++  +  + FV + L++MY K 
Sbjct: 196 DKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKC 255

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VF+++  ++ ++WN++I  Y    D  +       M   G +P L+TL S+ 
Sbjct: 256 GCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSII 315

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              ++    R+ + +HG+I+R    + D+ I  +++D Y K G ++SA  +F  +   +V
Sbjct: 316 YASSRSVQLRHGKFIHGYILRNRIDV-DIFIDVSLIDFYFKCGYVSSAETIFRTISKNEV 374

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I+G+   G   +A+ ++  M+E + + P+  T+ S L A S + AL +G ++H 
Sbjct: 375 VSWNVMISGHVMVGNHIQALHIYDNMKE-HHVKPDALTFSSTLSACSQLAALDKGRELHY 433

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +I + L  +  V   L+DMY KCG +D+A  LF+Q+P+   V W ++I  +G HGQ  +
Sbjct: 434 CIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASE 493

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  F +M    VR D +TF+++L+ACSH+GLV EG  YF+ M  ++ IKP ++HY C++
Sbjct: 494 ALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLI 553

Query: 478 DLFGRAGHLGMAHNFIQ-NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           DL GRAG L  A+  +Q +   R D  +   L  AC +H N  LG      L EVD ++ 
Sbjct: 554 DLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDP 613

Query: 537 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 596
             Y+L+SN+YA+V KW+ V +VR   ++ GLKK+PG S IE+N ++  F+  ++++P  +
Sbjct: 614 STYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNPLAD 673

Query: 597 KIYDELRNLTAKMK 610
            +Y+ L  L   M+
Sbjct: 674 GVYECLNILGCHME 687



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 258/507 (50%), Gaps = 15/507 (2%)

Query: 30  DFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D+ T    L+ C +   L  GK IH  +   GF+ ++ ++ SL+  Y        A  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 87  --DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSD 143
             +D P+ D   WNA++S Y  +   VEAL + D++     V  D  T   +L  C    
Sbjct: 62  QTNDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
            ++ G  IH +++K GL +++FV ++L+NMYAK      A+++FD+  +RDV  WN++I+
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263
            Y +      A   F  M++ G +P+ +T   + S   +L +    + VH  ++ R   +
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323
            D  + +A+VDMY K G +  A  VFE +P K+ I+WN +ITGY+  G +   IE+   M
Sbjct: 241 -DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383
            +     P   T  SI+ A S    LR G  IH  +++N +  D+F+   L+D Y KCG 
Sbjct: 300 ND-EGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGY 358

Query: 384 IDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
           +  A ++F  + ++  V WN +IS H + G   +AL+ +  M +  V+PD +TF S L+A
Sbjct: 359 VSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSA 418

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS    + +G R  H       ++ +    G ++D++ + G +  A      +P R D  
Sbjct: 419 CSQLAALDKG-RELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKR-DLV 476

Query: 504 IWGALLGACRIHGNMELGAVASDRLFE 530
            W +++ A   HG     A  + RLF+
Sbjct: 477 SWTSMIFAYGSHGQ----ASEALRLFD 499


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/439 (46%), Positives = 291/439 (66%), Gaps = 1/439 (0%)

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
           ++ NA+VDMYAK G  + A  VFE +  KDVISW +L+TG   NG   EA+ +F  M   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             I+P+Q    ++L A + +  L  G ++HA  +K+ L   + V   LV MY KCG I+D
Sbjct: 63  G-IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           A  +F  +     + W A+I  +  +G+G ++LNF+  M+  GV+PD ITF+ LL ACSH
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
           +GLV  G+ YF  M+E +GIKP  +HY CM+DL GR+G L  A   +  M V+PDA++W 
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 241

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           ALL ACR+HGN+ELG  A++ LFE++ +N   YVL+SN+Y+  GKWE   + R L + RG
Sbjct: 242 ALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRG 301

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           + K PG S IE+++KV  F + +R+HP+  +IY ++  +   +K  GYVPD +F L D++
Sbjct: 302 VSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMD 361

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+ KE  L  HSE+LA+AFG+++ PP +PI+IFKNLR+CGDCH   K++S +  R +I+R
Sbjct: 362 EEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILR 421

Query: 687 DSNRFHHFKDGICSCGDYW 705
           DSN FHHF++G CSC DYW
Sbjct: 422 DSNCFHHFREGACSCSDYW 440



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 13/303 (4%)

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
            V+N L++MYAK G   +A  VF++M ++DV+SW S++     +     A   F  M+  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284
           GI PD + + ++ S  A+L      + VH   ++ G     + + N++V MYAK G I  
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSG-LGSSLSVDNSLVSMYAKCGCIED 121

Query: 285 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344
           A  VF+ + ++DVI+W  LI GYAQNG   E++  +  M   + + P+  T++ +L A S
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBM-IASGVKPDFITFIGLLFACS 180

Query: 345 HVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVP 401
           H G +  G + + + ++             C++D+ G+ G++ +A  L  Q+  +  +  
Sbjct: 181 HAGLVEHG-RSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 239

Query: 402 WNAIISCHGIHGQ---GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
           W A+++   +HG    G++A N   ++  +   P    +V L    S +G   E  +   
Sbjct: 240 WKALLAACRVHGNVELGERAANNLFELEPKNAVP----YVLLSNLYSAAGKWEEAAKTRR 295

Query: 459 MMQ 461
           +M+
Sbjct: 296 LMK 298



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 103/188 (54%)

Query: 64  FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123
            V  +L+ MY + G  + A  +F+ M  +D  SW ++++G   +G+  EAL +  EMR+ 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           G+  D I +A++L  CA    +  G  +H   +K GL  +L V N+L++MYAK G +  A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243
            +VFD M  +DV++W ++I  Y Q+     +  F+  M  +G++PD +T + L    +  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 244 NDCRNSRS 251
               + RS
Sbjct: 183 GLVEHGRS 190



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 14/213 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++  V  G   EA+  F +  +  G+ PD      VL AC  L     GK++H + LK 
Sbjct: 39  LVTGCVHNGSYEEALRLFCEMRIM-GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS 97

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    + V  SL+ MY + G    A K+FD M ++D  +W A+I GY Q+G   E+L+  
Sbjct: 98  GLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFY 157

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-----LIHLYIVKHGLEFNLFVSNNLIN 172
           ++M   GV  D IT   +L  C+ +  +  G      +  +Y +K G E        +I+
Sbjct: 158 NBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYAC----MID 213

Query: 173 MYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +  + G +  A  + +QM ++ D   W +++AA
Sbjct: 214 LLGRSGKLMEAKELLNQMAVQPDATVWKALLAA 246


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 389/738 (52%), Gaps = 72/738 (9%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWD 62
           +R  R  +A++   +    S    D  T   +L+AC   R L +GK+IH  V++ G   +
Sbjct: 208 LRSERWEDALELSRRMQSASAKATDG-TIVKLLQACGKLRALNEGKQIHGYVIRFGRVSN 266

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
             +  S++ MY R     +AR +FD     +  SWN++IS Y  +G    A D+  EM  
Sbjct: 267 TSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMES 326

Query: 123 EGVSMDPITVASILP---VCARSDNILS-------------------------------- 147
             +  D IT  S+L    +    +N+L+                                
Sbjct: 327 SSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNL 386

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH YI++  LE++++V  +L++MY K   +  A  VF     +++ +WNS+I+ Y  
Sbjct: 387 GKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTY 446

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                 A      M++ GI+ DL+T  SL S               G+ M  G   E + 
Sbjct: 447 KGLFDNAEKLLIQMKEEGIKADLVTWNSLVS---------------GYSMS-GCSEEAL- 489

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
              AV++    LG+              +V+SW  +I+G  QN   ++A++ F  M+E N
Sbjct: 490 ---AVINRIKSLGL------------TPNVVSWTAMISGCCQNENYTDALQFFSQMQEEN 534

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + PN  T  ++L A +    L++G +IH   +K+    D+++AT L+DMY K G++  A
Sbjct: 535 -VKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVA 593

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F  +   +   WN ++  + I+G G++    F  M   G+RPD ITF +LL+ C +S
Sbjct: 594 HEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNS 653

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV +G +YF  M+ ++ I P ++HY CMVDL G+AG L  A +FI  MP + DASIWGA
Sbjct: 654 GLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGA 713

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           +L ACR+H ++++  +A+  LF ++  N   YVLM NIY+   +W  V+ ++      G+
Sbjct: 714 VLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGV 773

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           K    WS I+V   + +F T  ++HP+  +IY +L  L +++K LGYVPD + V Q++++
Sbjct: 774 KIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDD 833

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            EKE +L SH+E+LA+ +G++     +PI++ KN R+C DCH   K+IS    REI +RD
Sbjct: 834 SEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRD 893

Query: 688 SNRFHHFKDGICSCGDYW 705
             RFHHF +G CSC D W
Sbjct: 894 GGRFHHFMNGECSCNDRW 911



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/524 (25%), Positives = 244/524 (46%), Gaps = 43/524 (8%)

Query: 29  PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFD 87
           P F  F   L   R L   +++H  ++K+  + + V +  S++  Y  FG    A K+F 
Sbjct: 29  PKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFF 88

Query: 88  DMPVRDSGSWNAMISGYCQ-SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
               R+   WN+ +  +    G++ E L++  E+  +GV  D   +  +L +C     + 
Sbjct: 89  VGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELW 148

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G+ +H  ++K G + ++ +S  LIN+Y K   +  A +VFD+   ++   WN+I+ A  
Sbjct: 149 LGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANL 208

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S     A      MQ A  +    T+V L     +L      + +HG+++R G  + + 
Sbjct: 209 RSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG-RVSNT 267

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            I N++V MY++   +  A AVF+     ++ SWN++I+ YA NG  + A ++F+ ME  
Sbjct: 268 SICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMES- 326

Query: 327 NEINPN-------------QGTY----------------------VSILPAYSHVGALRQ 351
           + I P+             QG+Y                       S L A   +G    
Sbjct: 327 SSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNL 386

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IH  ++++ L +DV+V T LVDMY K   ++ A  +F+     +   WN++IS +  
Sbjct: 387 GKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTY 446

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
            G  D A     QM +EG++ D +T+ SL++  S SG   E     + ++   G+ P++ 
Sbjct: 447 KGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIK-SLGLTPNVV 505

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGAC 512
            +  M+    +  +   A  F   M    V+P+++    LL AC
Sbjct: 506 SWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 239/532 (44%), Gaps = 73/532 (13%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G++ D      VLK C  L++   G ++H  +LK GF+ DV ++ +L+++Y +    + A
Sbjct: 126 GVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRA 185

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            ++FD+ P+++   WN ++    +S    +AL++   M+         T+  +L  C + 
Sbjct: 186 NQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKL 245

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH Y+++ G   N  + N++++MY++   +  A  VFD   + ++ SWNSII
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSII 305

Query: 203 AAY----------------EQSN---DPITAHGFFT----------------TMQQAGIQ 227
           ++Y                E S+   D IT +   +                ++Q AG +
Sbjct: 306 SSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFK 365

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
           PD  ++ S    V +L      + +HG+IMR      DV +  ++VDMY K   +  A  
Sbjct: 366 PDSCSITSALQAVIELGYFNLGKEIHGYIMRSK-LEYDVYVCTSLVDMYIKNDCLEKAEV 424

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF     K++ +WN+LI+GY   GL   A ++   M+E   I  +  T+ S++  YS  G
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKE-EGIKADLVTWNSLVSGYSMSG 483

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
              + + +  R+    L  +V                               V W A+IS
Sbjct: 484 CSEEALAVINRIKSLGLTPNV-------------------------------VSWTAMIS 512

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
               +     AL FF QM +E V+P+  T  +LL AC+   L+ +G+   H    + G  
Sbjct: 513 GCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEE-IHCFSMKHGFV 571

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +     ++D++ + G L +AH   +N+  +     W  ++    I+G+ E
Sbjct: 572 DDIYIATALIDMYSKGGKLKVAHEVFRNIKEKT-LPCWNCMMMGYAIYGHGE 622



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MIS   +    ++A+  F Q      ++P+  T   +L+AC     L  G++IHC  +K 
Sbjct: 510 MISGCCQNENYTDALQFFSQMQ-EENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKH 568

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF  D+++A +L+ MY + G   VA ++F ++  +    WN M+ GY   G+  E   + 
Sbjct: 569 GFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLF 628

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN--LINMYA 175
           D M   G+  D IT  ++L  C  S  ++ G   +   +K     N  + +   ++++  
Sbjct: 629 DNMCKTGIRPDAITFTALLSGCKNSGLVMDGWK-YFDSMKTDYSINPTIEHYSCMVDLLG 687

Query: 176 KFGMMRHALRVFDQMMER-DVVSWNSIIAA 204
           K G +  AL     M ++ D   W +++AA
Sbjct: 688 KAGFLDEALDFIHAMPQKADASIWGAVLAA 717


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 350/637 (54%), Gaps = 38/637 (5%)

Query: 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160
           I+  C  GN  EA       RL  +  +       +  C    ++ SG  +H  +V  G 
Sbjct: 20  IATLCSKGNLREAFQ---RFRL-NIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGF 75

Query: 161 EFNLFVSNNLINMYAK----------FGMMR---------------------HALRVFDQ 189
             + F+ N+L++MY+K          +G MR                     +A +VFD+
Sbjct: 76  SSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDE 135

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249
           M +R + +WN++IA   Q          F  M   G  PD  TL S+ S  A L      
Sbjct: 136 MPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG 195

Query: 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQ 309
           + +HG+ ++ G  + D+++ +++  MY + G +     V   +PV+++++WNTLI G AQ
Sbjct: 196 QQIHGYTIKYGLEL-DLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQ 254

Query: 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 369
           NG     + +++MM+  +   PN+ T+V++L + S +    QG +IHA  IK      V 
Sbjct: 255 NGCPETVLYLYKMMK-ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVA 313

Query: 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE- 428
           V + L+ MY KCG + DA   F +      V W+++IS +G HGQGD+A+  F  M ++ 
Sbjct: 314 VVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQT 373

Query: 429 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488
            +  + + F++LL ACSHSGL  +G   F MM E++G KP LKHY C+VDL GRAG L  
Sbjct: 374 NMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQ 433

Query: 489 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548
           A   I++MP++ D  IW  LL AC IH N E+       + ++D  +   YVL++N++A+
Sbjct: 434 AEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHAS 493

Query: 549 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 608
             +W  V EVR   RD+ +KK  G S  E   +V  F  G+R+  K ++IY  L+ LT +
Sbjct: 494 AKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLE 553

Query: 609 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 668
           MK  GY PD + VL D++E+EKE  L  HSE+LA+AF ++  P  +PI+I KNLRVC DC
Sbjct: 554 MKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDC 613

Query: 669 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           H   K+IS I  REI +RD +RFHHF +G CSCGDYW
Sbjct: 614 HVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 223/465 (47%), Gaps = 64/465 (13%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G L EA   F +F L   +  +   F P +++C   ++L  GK++HC ++  GF  D F+
Sbjct: 27  GNLREA---FQRFRLN--IFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFI 81

Query: 66  AASLLHMYCRFG--------------------------------LANVARKLFDDMPVRD 93
              L+ MY + G                                L N ARK+FD+MP R 
Sbjct: 82  CNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVN-ARKVFDEMPDRK 140

Query: 94  SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153
             +WNAMI+G  Q     E L +  EM   G S D  T+ S+    A   ++  G  IH 
Sbjct: 141 LTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHG 200

Query: 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
           Y +K+GLE +L V+++L +MY + G ++    V   M  R++V+WN++I    Q+  P T
Sbjct: 201 YTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPET 260

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
               +  M+ +G +P+ +T V++ S  + L      + +H   ++ G     V + ++++
Sbjct: 261 VLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG-ASSVVAVVSSLI 319

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
            MY+K G +  A   F     +D + W+++I+ Y  +G   EAIE+F  M E   +  N+
Sbjct: 320 SMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINE 379

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA-----------TCLVDMYGKCG 382
             ++++L A SH G   +G+++          FD+ V            TC+VD+ G+ G
Sbjct: 380 VAFLNLLYACSHSGLKDKGLEL----------FDMMVEKYGFKPGLKHYTCVVDLLGRAG 429

Query: 383 RIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
            +D A ++   +P ++  V W  ++S   IH   + A   F+++L
Sbjct: 430 CLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEIL 474



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 9/330 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD YT   V       R++  G++IH   +K G E D+ V +SL HMY R G     
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 230

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +   MPVR+  +WN +I G  Q+G     L +   M++ G   + IT  ++L  C+  
Sbjct: 231 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 290

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH   +K G    + V ++LI+MY+K G +  A + F +  + D V W+S+I
Sbjct: 291 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 350

Query: 203 AAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +AY        A   F TM +Q  ++ + +  ++L    +          +   ++ +  
Sbjct: 351 SAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYG 410

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
           F   +     VVD+  + G ++ A A+   +P+K D++ W TL++    +  A  A  VF
Sbjct: 411 FKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVF 470

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +   E  +I+PN      +L A  H  A R
Sbjct: 471 K---EILQIDPNDSA-CYVLLANVHASAKR 496


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 339/591 (57%), Gaps = 37/591 (6%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFG--MMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H +I + GLE   FV   L+    K    M  +   VF Q+   +   W ++I  Y   
Sbjct: 58  VHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQ 117

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
              + +   + +M++ GI P   T  +L    +   D    R VH   +  G F  D+ +
Sbjct: 118 GPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYV 177

Query: 269 GNAVVDMY-------------------------------AKLGIINSACAVFEGLPVKDV 297
           GN ++DMY                               AK+G + +A  +F+GLP+KD+
Sbjct: 178 GNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDM 237

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG--IKI 355
           ++W  ++TGYAQN    EA+EVF+ M+    +  ++ T V ++ A + +GA +    ++ 
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAG-VKTDEVTLVGVISACAQLGAAKYANWVRD 296

Query: 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415
            A         +V V + L+DMY KCG ++DA  +F ++   +   ++++I    +HG  
Sbjct: 297 VAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLA 356

Query: 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
             A+  F +ML   ++P+ +TF+ +LTACSH+G+V +GQ+ F MM+E  G+ P   HY C
Sbjct: 357 GAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYAC 416

Query: 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535
           MVDL GRAG L  A N ++ MP+ P   +WGALLGACRIHGN ++  +A+  LFE++   
Sbjct: 417 MVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNG 476

Query: 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK-VDIFYTGNRTHPK 594
           +G Y+L+SNIYA+ G+W+ V +VR L R +GLKK PG S +E     +  F+ G+ +HPK
Sbjct: 477 IGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPK 536

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
             +I   L +L  ++K LGY P+ S V  D+ ++EK+ +L SHSE+LA+AFG++++    
Sbjct: 537 SREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGC 596

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            I+I KNLR+C DCH+     SQIT REI+VRD+ RFHHF+DG CSCG++W
Sbjct: 597 TIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 214/422 (50%), Gaps = 44/422 (10%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA--NVARKLFDDMPVRDS 94
           VL  C ++   K++H  + + G E   FV A LL    +  +      R +F  +   + 
Sbjct: 45  VLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNP 104

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             W A+I GY   G  +E++ + + MR +G+     T  ++L  C+ + ++  G  +H  
Sbjct: 105 FLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQ 164

Query: 155 -IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA--------- 204
            I+  G   +L+V N LI+MY K G +    RVFD+M++RDV+SW S+I A         
Sbjct: 165 TILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEA 224

Query: 205 ----------------------YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
                                 Y Q+  P  A   F  MQ AG++ D +TLV + S  AQ
Sbjct: 225 ASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQ 284

Query: 243 LNDCRNSRSVHGFIMRRGWF-MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
           L   + +  V     + G+    +V++G+A++DMYAK G +  A  VFE +  ++V S++
Sbjct: 285 LGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYS 344

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361
           ++I G+A +GLA  A+E+F  M +  EI PN+ T++ +L A SH G + QG ++ A + +
Sbjct: 345 SMIVGFAMHGLAGAAMELFDEMLK-TEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEE 403

Query: 362 NCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVPRSS-SVPWNAIISCHGIHGQGD 416
              C  V  +     C+VD+ G+ GR+++A++L   +P +     W A++    IHG  D
Sbjct: 404 ---CHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPD 460

Query: 417 KA 418
            A
Sbjct: 461 MA 462



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 38/275 (13%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHC-SVLK 56
           +I  Y   G   E+V   Y      G+ P  +TF  +LKAC   +D   G+++H  ++L 
Sbjct: 110 LIRGYALQGPFMESV-LLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILI 168

Query: 57  LGFEWDVFVAASLLHMYCRFGL-------------------------------ANVARKL 85
            GF  D++V  +L+ MY + G                                   A +L
Sbjct: 169 GGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASEL 228

Query: 86  FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 145
           FD +P++D  +W AM++GY Q+    EAL++ + M+  GV  D +T+  ++  CA+    
Sbjct: 229 FDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAA 288

Query: 146 LSGLLIHLYIVKHGL--EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIA 203
                +     + G     N+ V + LI+MYAK G +  A +VF++M ER+V S++S+I 
Sbjct: 289 KYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIV 348

Query: 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +        A   F  M +  I+P+ +T + + +
Sbjct: 349 GFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLT 383



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIH-----CSVL 55
           M++ Y +  R  EA++ F +    +G++ D  T   V+ AC  L   K  +         
Sbjct: 243 MVTGYAQNARPREALEVFERMQ-AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQS 301

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
             G   +V V ++L+ MY + G    A K+F+ M  R+  S+++MI G+   G A  A++
Sbjct: 302 GFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAME 361

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNLINMY 174
           + DEM    +  + +T   +L  C+ +  +  G  +   + + HG+  +      ++++ 
Sbjct: 362 LFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLL 421

Query: 175 AKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAH 215
            + G +  AL +   M M      W +++ A     +P  A 
Sbjct: 422 GRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQ 463


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 347/608 (57%), Gaps = 11/608 (1%)

Query: 106 QSGNAVEALDILDEMRL---EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF 162
           Q  + +E LD+ D ++L     VS     +A  L  C     I  G  IH +IV  G + 
Sbjct: 31  QQIDRLERLDLRDAVQLLEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKS 90

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           + ++ N L+ MY K G ++ A  VF     R+V SW  ++AA+  +   + A      M 
Sbjct: 91  SRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMD 150

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             GI P+ +T + L   VA L+     R++H  I   G F+ D+ + N +++MYAK   +
Sbjct: 151 LEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCG-FLADIFVANCLINMYAKCRSL 209

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             AC+VFE L  + VI+W  L+  YA NG   +A++VF +M   + + P + T+V+++  
Sbjct: 210 ADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMT-LDGVEPTEVTFVTVVDV 268

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + +     G ++H  VI      +V V   L++MYGKC   D+A  +F  + R   + W
Sbjct: 269 CADIAVFGIGREVHG-VIDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITW 327

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDE-----GVRPDHITFVSLLTACSHSGLVSEGQRYF 457
           N++I+ +G +G G +AL  +++M +      G+  D ITF+ +L ACSH+GLV +  + +
Sbjct: 328 NSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLY 387

Query: 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 517
             M  ++G KP     GC++DL GRAG L  A  FI +MP  PD +IW  LLGAC  H +
Sbjct: 388 SSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHAD 447

Query: 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 577
           +E  A A+DR+  +   + G YV +SN+YA   +W+ +  +R L   RG+ K  G SSIE
Sbjct: 448 VERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIE 507

Query: 578 VNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637
           +   +  F  G+ +HP+  +IY+ELR +   ++  GYVPD   VL +   + KE +   H
Sbjct: 508 IGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFH 567

Query: 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
           SERLAIAFG+ISSP  + ++I KNLRVC DCH+ TK IS+ + R+IIVRD+NRFH F++G
Sbjct: 568 SERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNG 627

Query: 698 ICSCGDYW 705
            CSC DYW
Sbjct: 628 SCSCEDYW 635



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 209/404 (51%), Gaps = 11/404 (2%)

Query: 44  LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISG 103
           + +GK+IH  ++  GF+   ++   L+ MY + G    A+ +F   P R+  SW  M++ 
Sbjct: 73  IAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAA 132

Query: 104 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 163
           +  +G+ ++AL++L+ M LEG+S + IT   +L   A    +  G  +H  I   G   +
Sbjct: 133 FAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLAD 192

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 223
           +FV+N LINMYAK   +  A  VF+ +  R V++W +++AAY  +     A   F  M  
Sbjct: 193 IFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTL 252

Query: 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
            G++P  +T V++  + A +      R VHG I  R     +V +GNA+++MY K    +
Sbjct: 253 DGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARS--EANVCVGNALINMYGKCASPD 310

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN----EINPNQGTYVSI 339
            A  VF+ +  KD+I+WN++I  Y QNG   +A+E+++ M+E       I  +  T++ +
Sbjct: 311 EARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGV 370

Query: 340 LPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RS 397
           L A SH G ++   K+++ +I +           CL+D+ G+ G +D+A      +P   
Sbjct: 371 LFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHP 430

Query: 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSL 440
               W  ++     H   ++A     +++   +RP D  ++V+L
Sbjct: 431 DHTIWTILLGACITHADVERAARAADRIM--ALRPTDSGSYVAL 472


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 367/635 (57%), Gaps = 12/635 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MIS Y   G   +A++ F Q  L   ++ D  T    ++AC  L     GK+IH   +K 
Sbjct: 226 MISGYYDVGDYFKALELFVQM-LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKF 284

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F  D+++  +LL+MY   G    + +LF+ +P RD+  WN+MIS Y   G   EA+D+ 
Sbjct: 285 EFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLF 344

Query: 118 DEMRLEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
             M+ EGV  D  TV  +L +C   +  +L G  +H +++K G+  +  + N L++MY +
Sbjct: 345 IRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTE 404

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
              +    ++FD+M   D++SWN++I A  ++     A   F  M+++ I+P+  T++S+
Sbjct: 405 LNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISI 464

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD 296
            +    +      RS+HG++M+    +   +   A+ DMY   G   +A  +FEG P +D
Sbjct: 465 LAACEDVTCLDFGRSIHGYVMKHSIEINQPL-RTALADMYMNCGDEATARDLFEGCPDRD 523

Query: 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIH 356
           +ISWN +I  Y +N  A +A+ +F  M   +E  PN  T +++L +++H+  L QG  +H
Sbjct: 524 LISWNAMIASYVKNNQAHKALLLFHRM--ISEAEPNSVTIINVLSSFTHLATLPQGQSLH 581

Query: 357 ARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           A V +    L  D+ +A   + MY +CG +  A ++F  +P+ + + WNA+I+ +G++G+
Sbjct: 582 AYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGR 641

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
           G  A+  F QML++G RP+ +TFVS+L+ACSHSG +  G + FH M ++F + P L HY 
Sbjct: 642 GSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYS 701

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           C+VDL  R G +  A  FI +MP+ PDAS+W ALL +CR + + +      ++L +++  
Sbjct: 702 CIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPM 761

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           N G YVL+SN+YA  G W  V  +R+  +++GL+K PG S I V N+V  F  G+R+HP+
Sbjct: 762 NAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQ 821

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            +KIY +L  L + M+  GY PD  +V    EED+
Sbjct: 822 SDKIYAKLSILLSSMRETGYDPDLRWVFH--EEDD 854



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 159/510 (31%), Positives = 266/510 (52%), Gaps = 11/510 (2%)

Query: 27  LRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLG-FEWDVFVAASLLHMYCRFGLANVA 82
           LRP+  T   +L AC    +   G+ +H   L+ G F+ +  VA +L+  Y RF +  V 
Sbjct: 150 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDM-RVL 208

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             LFD M VR+  SWNAMISGY   G+  +AL++  +M ++ V  D +T+   +  CA  
Sbjct: 209 PLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAEL 268

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
            ++  G  IH   +K     +L++ N L+NMY+  G +  + ++F+ +  RD   WNS+I
Sbjct: 269 GSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 328

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL-NDCRNSRSVHGFIMRRGW 261
           +AY        A   F  MQ  G++ D  T+V + S+  +L +     +S+H  +++ G 
Sbjct: 329 SAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGM 388

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321
            + D  +GNA++ MY +L  + S   +F+ +   D+ISWNT+I   A+N L ++A E+F+
Sbjct: 389 RI-DASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 447

Query: 322 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381
            M E +EI PN  T +SIL A   V  L  G  IH  V+K+ +  +  + T L DMY  C
Sbjct: 448 RMRE-SEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNC 506

Query: 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441
           G    A  LF   P    + WNA+I+ +  + Q  KAL  F +M+ E   P+ +T +++L
Sbjct: 507 GDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVL 565

Query: 442 TACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           ++ +H   + +GQ  + ++ +  F +   L      + ++ R G L  A N  + +P R 
Sbjct: 566 SSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRN 625

Query: 501 DASIWGALLGACRIHGNMELGAVASDRLFE 530
             S W A++    ++G      +A  ++ E
Sbjct: 626 IIS-WNAMIAGYGMNGRGSDAMLAFSQMLE 654



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 252/505 (49%), Gaps = 12/505 (2%)

Query: 13  EAVDCFYQFTLTSGLRPDFYTFPPVLKAC--RNLVD-GKKIHCSVLKLGFEWDVFVAASL 69
           +A+   Y    + G+ P+  T P VLKAC  +N V+ GK IH S+       DV V  ++
Sbjct: 35  QAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAV 94

Query: 70  LHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129
           +  YC+ G    AR +FD M  RD   WNAM+ GY   G   EA+ ++ EM  E +  + 
Sbjct: 95  VDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNS 154

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFD 188
            T+ ++L  C  +  +  G  +H Y +++G+ + N  V+  LI  Y +F M    L +FD
Sbjct: 155 RTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFD 213

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M+ R++VSWN++I+ Y    D   A   F  M    ++ D +T++      A+L   + 
Sbjct: 214 LMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKL 273

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   ++   F+ED+ I NA+++MY+  G + S+  +FE +P +D   WN++I+ YA
Sbjct: 274 GKQIHQLAIKFE-FVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYA 332

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFD 367
             G   EA+++F  M+    +  ++ T V +L     + + L +G  +HA VIK+ +  D
Sbjct: 333 AFGCHEEAMDLFIRMQS-EGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRID 391

Query: 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427
             +   L+ MY +   ++    +F ++     + WN +I     +    +A   F +M +
Sbjct: 392 ASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRE 451

Query: 428 EGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
             ++P+  T +S+L AC     +  G+  + ++M+    I   L+    + D++   G  
Sbjct: 452 SEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLR--TALADMYMNCGDE 509

Query: 487 GMAHNFIQNMPVRPDASIWGALLGA 511
             A +  +  P R D   W A++ +
Sbjct: 510 ATARDLFEGCPDR-DLISWNAMIAS 533



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 189/383 (49%), Gaps = 6/383 (1%)

Query: 91  VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150
           ++D   WN++I       N    L    +M   GV  +  T+  +L  CA  + +  G  
Sbjct: 15  IKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKS 74

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           IH  I    L  ++ V   +++ Y K G +  A  VFD M +RDVV WN+++  Y     
Sbjct: 75  IHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 134

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
              A      M +  ++P+  T+V+L       ++ R  R VHG+ +R G F  +  +  
Sbjct: 135 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 194

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEI 329
           A++  Y +   +     +F+ + V++++SWN +I+GY   G   +A+E+F QM+   +E+
Sbjct: 195 ALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML--VDEV 251

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
             +  T +  + A + +G+L+ G +IH   IK     D+++   L++MY   G ++ +  
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 311

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH--S 447
           LF  VP   +  WN++IS +   G  ++A++ F +M  EGV+ D  T V +L+ C    S
Sbjct: 312 LFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELAS 371

Query: 448 GLVSEGQRYFHMMQEEFGIKPHL 470
           GL+     + H+++    I   L
Sbjct: 372 GLLKGKSLHAHVIKSGMRIDASL 394



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 292 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           + +KD   WN++I   A        +  +  ME    + PN  T   +L A +   A+ +
Sbjct: 13  IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLG-VLPNNTTLPLVLKACAAQNAVER 71

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G  IH  +    L  DV V T +VD Y KCG ++DA  +F  +     V WNA++  +  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            G  ++A+   R+M  E +RP+  T V+LL AC  +  +  G+
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/633 (35%), Positives = 362/633 (57%), Gaps = 7/633 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ YV+  R  E +  F    L  G+     T+  V ++C  L     G ++H   LK 
Sbjct: 210 VIAGYVQNDRFIEGLKLFKDM-LKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKS 268

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F +D  +  + L MY +    + A K+F+ +P     S+NA+I GY +    ++AL+I 
Sbjct: 269 DFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIF 328

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             ++   +S D I+++  L  C+     L G+ +H   VK GL FN+ V+N +++MY K 
Sbjct: 329 QSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKC 388

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +FD M  RD VSWN+IIAA+EQ+ + +     F +M ++ ++PD  T  S+ 
Sbjct: 389 GALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVV 448

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A          +HG I++ G  + D  +G+A+VDMY K G++  A  + + L  K  
Sbjct: 449 KACAGQQALNYGMEIHGRIVKSGMGL-DWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTT 507

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++I+G++    +  A   F  M E   I P+  TY ++L   +++  +  G +IHA
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQMLEMGVI-PDNFTYATVLDVCANMATIELGKQIHA 566

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L  DV++A+ LVDMY KCG + D+  +F + P+   V W+A+I  +  HG G++
Sbjct: 567 QILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQ 626

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+  F +M    V+P+H  F+S+L AC+H G V +G  YF +MQ  +G+ PH++HY CMV
Sbjct: 627 AIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMV 686

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+  +  A   I++M    D  IW  LL  C++ GN+E+   A + L ++D ++  
Sbjct: 687 DLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSS 746

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL++N+YANVG W  V ++RS+ ++  LKK PG S IEV ++V  F  G++ HP+ E+
Sbjct: 747 AYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEE 806

Query: 598 IYDELRNLTAKMKSLGYVPD-KSFVLQDVEEDE 629
           IY++   L  +MK  GYVPD  S + ++VEE +
Sbjct: 807 IYEQTHLLVDEMKWAGYVPDIDSMLDEEVEEQD 839



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/533 (27%), Positives = 276/533 (51%), Gaps = 12/533 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y+  G   ++++ F +   +  +  D+ TF  VLKAC  + D   G ++HC  +++
Sbjct: 109 LLSCYLHNGVNRKSIEIFVRMR-SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQM 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV   ++L+ MY +    + A ++F +MP R+   W+A+I+GY Q+   +E L + 
Sbjct: 168 GFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLF 227

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G+ +   T AS+   CA       G  +H + +K    ++  +    ++MYAK 
Sbjct: 228 KDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC 287

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M  A +VF+ +      S+N+II  Y + +  + A   F ++Q+  +  D ++L    
Sbjct: 288 DRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGAL 347

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + +        +HG  ++ G    ++ + N ++DMY K G +  AC +F+ +  +D 
Sbjct: 348 TACSVIKGHLEGIQLHGLAVKCGLGF-NICVANTILDMYGKCGALVEACTIFDDMERRDA 406

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I  + QN    + + +F  M   + + P+  TY S++ A +   AL  G++IH 
Sbjct: 407 VSWNAIIAAHEQNEEIVKTLSLFVSMLR-STMEPDDFTYGSVVKACAGQQALNYGMEIHG 465

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R++K+ +  D FV + LVDMYGKCG + +A  +  ++   ++V WN+IIS      Q + 
Sbjct: 466 RIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSEN 525

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A  +F QML+ GV PD+ T+ ++L  C++   +  G++  H    +  +   +     +V
Sbjct: 526 AQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQ-IHAQILKLNLHSDVYIASTLV 584

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530
           D++ + G++  +    +  P R D   W A++ A   HG+ E     + +LFE
Sbjct: 585 DMYSKCGNMQDSRLMFEKTPKR-DYVTWSAMICAYAYHGHGE----QAIKLFE 632



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/515 (28%), Positives = 255/515 (49%), Gaps = 40/515 (7%)

Query: 32  YTFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR------------- 75
           +TF  +L+ C NL     GK+ H  ++   F   ++VA  L+  YC+             
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 76  -------------FGLANV-----ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                        FG A +     A+ LFD MP RD  SWN+++S Y  +G   ++++I 
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             MR   +  D  T + +L  C+  ++   GL +H   ++ G E ++   + L++MY+K 
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A R+F +M ER++V W+++IA Y Q++  I     F  M + G+     T  S+ 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L+  +    +HG  ++   F  D IIG A +DMYAK   ++ A  VF  LP    
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSD-FAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
            S+N +I GYA+     +A+E+FQ ++    ++ ++ +    L A S +    +GI++H 
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQR-TYLSFDEISLSGALTACSVIKGHLEGIQLHG 364

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
             +K  L F++ VA  ++DMYGKCG + +A ++F  + R  +V WNAII+ H  + +  K
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVK 424

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCM 476
            L+ F  ML   + PD  T+ S++ AC+    ++ G   +  +++   G+   +     +
Sbjct: 425 TLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG--SAL 482

Query: 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           VD++G+ G L  A      +  +   S W +++  
Sbjct: 483 VDMYGKCGMLMEAEKIHDRLEEKTTVS-WNSIISG 516


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 335/584 (57%), Gaps = 9/584 (1%)

Query: 127 MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL--FVSNNLINMYAKFGMMRHAL 184
           + P ++AS++     +     G   H  I+K  L+  L  F+ N+L+NMY+K      A 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQ 62

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
            +      R VV+W ++IA   Q+    +A   F+ M++  IQP+  T          L 
Sbjct: 63  LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLR 122

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                + VH   ++ G  + DV +G +  DMY+K G+   A  +F+ +P +++ +WN  +
Sbjct: 123 SPLVGKQVHALAVKAGQ-ISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYL 181

Query: 305 TGYAQNGLASEAIEVFQMMEECNE-INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363
           +     G   +A+  F  +E   E I P      S+L A + +  L  G  +H   +K C
Sbjct: 182 SNSVLEGRYDDALTAF--IEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKAC 239

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 423
           +  ++FV + LVDMYGKCG I+DA   F ++P  + V WNA+I  +   GQ D A+  F 
Sbjct: 240 VVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFD 299

Query: 424 QML--DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481
           +M      V P+++TFV +L+ACS +G V+ G   F  M+  +GI+P  +HY C+VDL G
Sbjct: 300 EMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLG 359

Query: 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541
           RAG +  A+ FI+ MP+RP  S+WGALLGA ++ G  ELG VA+D LFE+D  + G +VL
Sbjct: 360 RAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVL 419

Query: 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 601
           +SN++A  G+WE    VR   +D G+KK  G S I   N V +F   + +H +  +I   
Sbjct: 420 LSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAM 479

Query: 602 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 661
           L  L  +M++ GY+PD SF L D+EE+EK   +  HSE++A+AFG+IS P   PI+I KN
Sbjct: 480 LAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKN 539

Query: 662 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           LR+CGDCH+  KFIS I  REIIVRD+N FH F+D  CSC DYW
Sbjct: 540 LRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 231/503 (45%), Gaps = 36/503 (7%)

Query: 47  GKKIHCSVLK-LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 105
           G+  H  ++K L      F+   L++MY +    N A+ L    P R   +W A+I+G  
Sbjct: 25  GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSV 84

Query: 106 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165
           Q+G    AL     MR + +  +  T            + L G  +H   VK G   ++F
Sbjct: 85  QNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVF 144

Query: 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY---EQSNDPITAHGFFTTMQ 222
           V  +  +MY+K G+   A ++FD+M ER++ +WN+ ++      + +D +TA   F   +
Sbjct: 145 VGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTA---FIEAR 201

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           + GI+P    + S+ S  A L+     +SVH   + +   + ++ +G+A+VDMY K G I
Sbjct: 202 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV-KACVVGNIFVGSALVDMYGKCGSI 260

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSILP 341
             A   F+ +P +++++WN +I GYA  G A  A+ +F +M    + + PN  T+V +L 
Sbjct: 261 EDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLS 320

Query: 342 AYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS 399
           A S  G++  G++I   +  +  +        C+VD+ G+ G ++ A     ++P R + 
Sbjct: 321 ACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTV 380

Query: 400 VPWNAIISCHGIHGQGD----KALNFFR-QMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
             W A++    + G+ +     A N F    LD G   +H+   ++  A   +G   E  
Sbjct: 381 SVWGALLGASKMFGKSELGKVAADNLFELDPLDSG---NHVLLSNMFAA---AGRWEEAT 434

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
                M+ + GIK   K  GC     G A H+  A +          A +        ++
Sbjct: 435 LVRKEMK-DVGIK---KGAGCSWITAGNAVHVFQAKDTSHERNSEIQAML-------AKL 483

Query: 515 HGNMELGAVASDR---LFEVDSE 534
            G ME      D    LF+++ E
Sbjct: 484 RGEMEAAGYIPDTSFALFDLEEE 506



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 7/310 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           +I+  V+ GR + A+  F      S ++P+ +TFP   KA    R+ + GK++H   +K 
Sbjct: 79  LIAGSVQNGRFTSALFHFSNMRRDS-IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKA 137

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G   DVFV  S   MY + GL   ARK+FD+MP R+  +WNA +S     G   +AL   
Sbjct: 138 GQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAF 197

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            E R EG+      V+S+L  CA    +  G  +H   VK  +  N+FV + L++MY K 
Sbjct: 198 IEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKC 257

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVS 235
           G +  A R FD+M ER++V+WN++I  Y        A   F  M      + P+ +T V 
Sbjct: 258 GSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVC 317

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + S  ++         +   +  R            VVD+  + G++  A    + +P++
Sbjct: 318 VLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR 377

Query: 296 DVIS-WNTLI 304
             +S W  L+
Sbjct: 378 PTVSVWGALL 387


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 340/572 (59%), Gaps = 17/572 (2%)

Query: 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ 189
           +T   ++  C  S     GLL+H ++VK G E + ++ N+LI++YA    +  A ++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 190 MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL---TLVSLTSIVAQLNDC 246
             +RDVVSWN++I  Y +  +       F  M    +  D++   T+++  +IV ++++ 
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEA 116

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           +  R       R      +++  N+++  + K G +  A  +F  +P +DV+SWN+++  
Sbjct: 117 K--RLFDEMPER------NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLAC 168

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YAQ G  +EA+ +F  M     + P + T VS+L A +H+GAL +G+ +H  +  N +  
Sbjct: 169 YAQCGKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEV 227

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 426
           +  V T LVDMY KCG+I  A  +F  +     + WN II+   IHG   +A   F++M 
Sbjct: 228 NSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMK 287

Query: 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486
           +  V P+ ITFV++L+ACSH+G+V EGQ+    M   +GI+P ++HY C++DL  RAG L
Sbjct: 288 EASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLL 347

Query: 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546
             A   I  MP+ P+ S  GALLG CRIHGN ELG +   RL  +   + G Y+L+SNIY
Sbjct: 348 EEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 407

Query: 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLT 606
           A   KW+   +VR+L +  G+ K PG S IE+   V  F  G+ +HP+  KIYD+L  + 
Sbjct: 408 AAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIH 467

Query: 607 AKMKS-LGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVC 665
            ++KS +GY  D   VL D+EE++KEH L  HSE+LAIA+G++    K  I+I KNLRVC
Sbjct: 468 TRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 527

Query: 666 GDCHNWTKFISQITEREIIVRDSNRFHHFKDG 697
            DCH+ TK IS++  REIIVRD NRFHHF+DG
Sbjct: 528 RDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 189/372 (50%), Gaps = 24/372 (6%)

Query: 33  TFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM 89
           T+P V+KAC        G  +H  V+K GFE D ++  SL+H+Y        A++LF   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             RD  SWNAMI GY + G       + D M    V  D I+  +I+   A    I+  +
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYA----IVGKI 113

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 209
                +     E NL   N++++ + K G +  A  +F +M  RDVVSWNS++A Y Q  
Sbjct: 114 DEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCG 173

Query: 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269
            P  A   F  M+  G++P   T+VSL S  A L        +H +I        + I+G
Sbjct: 174 KPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI-NDNRIEVNSIVG 232

Query: 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329
            A+VDMYAK G I+ A  VF  +  KDV++WNT+I G A +G   EA ++F+ M+E + +
Sbjct: 233 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS-V 291

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT------CLVDMYGKCGR 383
            PN  T+V++L A SH G + +G K     + +C+     +        C++D+  + G 
Sbjct: 292 EPNDITFVAMLSACSHAGMVDEGQK-----LLDCMSSSYGIEPKVEHYDCVIDLLARAGL 346

Query: 384 IDDAMSLFYQVP 395
           +++AM L   +P
Sbjct: 347 LEEAMELIGTMP 358



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127
           S+L  + + G    A  LF +MP RD  SWN+M++ Y Q G   EAL + D+MR  GV  
Sbjct: 133 SMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKP 192

Query: 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 187
              TV S+L  CA    +  GL +H YI  + +E N  V   L++MYAK G +  A +VF
Sbjct: 193 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 252

Query: 188 DQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 247
           + M  +DV++WN+IIA          A   F  M++A ++P+ +T V++ S  +      
Sbjct: 253 NAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVD 312

Query: 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
             + +   +         V   + V+D+ A+ G++  A  +   +P++
Sbjct: 313 EGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/691 (35%), Positives = 374/691 (54%), Gaps = 58/691 (8%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR----- 121
           A + H+  R G    AR  F+ MP+R + S+NA+++GY ++     AL +   M      
Sbjct: 22  ARIAHL-ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 122 -----LEGVSMDPITV---ASILPVCARSDNILSGLLIHLYIVKHGL------------E 161
                + G+S+   T+   A+ L       +++S   +    V+HGL            E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N      L+      G +  A R+FD+M +RDVV+W ++++ Y Q+     A   F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR---GW-----------FMED-- 265
            +  +    ++  ++ S  AQ  +   +R +   +  R    W            +ED  
Sbjct: 201 PKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 266 ----------VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
                     V   NA++  + + G++++A  VFE +  +D  +W+ +I  Y QN    E
Sbjct: 257 ELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLME 316

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+  F+ M     + PN  + +SIL   + +  L  G ++HA +++     DVF  + L+
Sbjct: 317 ALSTFREML-WRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
            MY KCG +D A  +F+       V WN++I+ +  HG G++AL  F  M   G+ PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T++  LTACS++G V EG+  F+ M     I+P  +HY CMVDL GR+G +  A + I+N
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MPV PDA IWGAL+GACR+H N E+  VA+ +L E++  N G YVL+S+IY +VG+WE  
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDA 555

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN-RTHPKYEKIYDELRNLTAKMKSLGY 614
            ++R     R L K+PG S IE + +V +F +G+   HP++  I   L  L   +   GY
Sbjct: 556 SKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGY 615

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
             D SFVL D++E++K H L  HSER A+A+G++  P   PI++ KNLRVCGDCH+  K 
Sbjct: 616 SADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKL 675

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++IT REI++RD+NRFHHFKDG CSC DYW
Sbjct: 676 IAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y +   L EA+  F +  L  G+RP++ +   +L  C  L     G+++H ++L+ 
Sbjct: 304 MIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC 362

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ DVF  ++L+ MY + G  + A+++F     +D   WN+MI+GY Q G   +AL I 
Sbjct: 363 SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLI-HLYIVKHGLEFNLFVSNNLINMYAK 176
            +MRL G+S D IT    L  C+ +  +  G  I +   V   +       + ++++  +
Sbjct: 423 HDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR 482

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  A  +   M +E D V W +++ A
Sbjct: 483 SGLVEEAFDLIKNMPVEPDAVIWGALMGA 511



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 144/345 (41%), Gaps = 59/345 (17%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I   A+ G +  A   F+ M  R   S+N+++A Y ++  P  A G F  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
            DL +  +L S               G  +RR                      +  A A
Sbjct: 78  -DLASYNALIS---------------GLSLRR--------------------QTLPDAAA 101

Query: 288 VFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
               +P    V+S+ +L+ GY ++GL ++AI +FQ M E N +     +Y  +L      
Sbjct: 102 ALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV-----SYTVLLGGLLDA 156

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G + +  ++   +       DV   T ++  Y + GRI +A +LF ++P+ + V W A+I
Sbjct: 157 GRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMI 212

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
           S +  +G+ + A   F  M +     + +++ ++L     +G V +    F+ M E    
Sbjct: 213 SGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMPEH--- 265

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
            P       MV  FG+ G +  A    + M  R D + W A++ A
Sbjct: 266 -PVAACNAMMVG-FGQRGMVDAAKTVFEKMRERDDGT-WSAMIKA 307


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/705 (33%), Positives = 386/705 (54%), Gaps = 37/705 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF-----GLANVARKLFDDMPV 91
           +L +C+ L   K+IH  +L+   +    +   L+   C          + A  LF  +P 
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 92  RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 151
             +   N ++  + +       L +   +R  G  +D  +   +L   ++   +  GL I
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 152 HLYIVKHGL-EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           H    K G    + F+ + LI MYA  G +  A  +FD+M  RDVV+WN +I  Y Q+  
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM------- 263
                  +  M+ +G +PD + L ++ S  A   +    +++H FI   G+ +       
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257

Query: 264 -----------------------EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
                                  + +++  A++  YAKLG++  A  +F+ +  KD++ W
Sbjct: 258 LVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           + +I+GYA++    EA+++F  M+    I P+Q T +S++ A ++VGAL Q   IH    
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQR-RRIVPDQITMLSVISACANVGALVQAKWIHTYAD 376

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
           KN     + +   L+DMY KCG +  A  +F  +PR + + W+++I+   +HG  D A+ 
Sbjct: 377 KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIA 436

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M ++ + P+ +TF+ +L ACSH+GLV EGQ++F  M  E  I P  +HYGCMVDL+
Sbjct: 437 LFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLY 496

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
            RA HL  A   I+ MP  P+  IWG+L+ AC+ HG +ELG  A+ RL E++ ++ G  V
Sbjct: 497 CRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALV 556

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
           ++SNIYA   +W+ V  VR L + +G+ K    S IEVNN+V +F   +R H + ++IY 
Sbjct: 557 VLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYK 616

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           +L  + +++K +GY P  S +L D+EE+EK+ ++  HSE+LA+ +G+I    +S I+I K
Sbjct: 617 KLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVK 676

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLR+C DCH++ K +S++   EI++RD  RFHHF  GICSC DYW
Sbjct: 677 NLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 41/463 (8%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF-EWDVF 64
           G   E     Y     +G   D ++FPP+LKA   L     G +IH    K GF   D F
Sbjct: 93  GPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPF 152

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 124
           + ++L+ MY   G    AR LFD M  RD  +WN MI GY Q+ +    L + +EM+  G
Sbjct: 153 IQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSG 212

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM----------- 173
              D I + ++L  CA + N+  G  IH +I  +G      +  +L+NM           
Sbjct: 213 TEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAR 272

Query: 174 --------------------YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
                               YAK GM++ A  +FD+M+E+D+V W+++I+ Y +S  P+ 
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLE 332

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  MQ+  I PD +T++S+ S  A +     ++ +H +  + G F   + I NA++
Sbjct: 333 ALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNG-FGRTLPINNALI 391

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333
           DMYAK G +  A  VFE +P K+VISW+++I  +A +G A  AI +F  M+E N I PN 
Sbjct: 392 DMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQN-IEPNG 450

Query: 334 GTYVSILPAYSHVGALRQGIKIHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
            T++ +L A SH G + +G K  + +I ++ +        C+VD+Y +   +  AM L  
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE 510

Query: 393 QVPRSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
            +P   +V  W +++S    HG+ +       ++L+  + PDH
Sbjct: 511 TMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLE--LEPDH 551


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/659 (35%), Positives = 379/659 (57%), Gaps = 6/659 (0%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
           GK +H  V++    +DV    +L+ +Y + G   +AR++FD MP R+  S N ++SGY  
Sbjct: 35  GKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV 166
           SG   +AL +L   R+    ++   ++S +   A   +   G   H Y +K GL  + +V
Sbjct: 94  SGRHRDALALL---RVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYV 150

Query: 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 226
            + +++MY +   M  A++VFD +   +V ++NS+I  +        +     +M +   
Sbjct: 151 CSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVG 210

Query: 227 QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286
           Q D ++ V++    A   +      VH   ++R   + +V +G+A+VDMY K    + A 
Sbjct: 211 QWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLEL-NVYVGSALVDMYGKCDFPHEAN 269

Query: 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346
            VFE LP K+++SW  ++T Y QN L  +A+++F  ME    + PN+ TY   L + + +
Sbjct: 270 RVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDME-MEGVRPNEFTYAVALNSCAGL 328

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
             L+ G  + A  +K      + V   L++MY K G ++DA  +F  +P    V WN+II
Sbjct: 329 ATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSII 388

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466
             +  HG+  +A+  F  ML     P ++TF+ +L+AC+  GLV EG  Y ++M +E G+
Sbjct: 389 IGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGV 448

Query: 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASD 526
           KP  +HY CMV L  R G L  A  FI++  +  D   W +LL +C+++ N  LG   ++
Sbjct: 449 KPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAE 508

Query: 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFY 586
           ++F++  ++VG YVL+SN+YA   +W+GV +VR L R+ G++K PG S I+V ++V +F 
Sbjct: 509 QIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFT 568

Query: 587 TGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFG 646
           + ++ HP  E+I  +L+ L  K+K +GYVP+ +  L DVE+++KE  L  HSE+LA+AFG
Sbjct: 569 SEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFG 628

Query: 647 IISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +I +P    I+I KN+R+C DCH   K IS  T R I+VRD+ RFH  +DG+CSC DYW
Sbjct: 629 LIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 14/323 (4%)

Query: 30  DFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 86
           D  ++  VL  C   + +V G ++H   LK   E +V+V ++L+ MY +    + A ++F
Sbjct: 213 DHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVF 272

Query: 87  DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
           + +P ++  SW A+++ Y Q+    +AL +  +M +EGV  +  T A  L  CA    + 
Sbjct: 273 EVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLK 332

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
           +G  +    +K G    L V N L+NMY+K G +  A RVF  M  RDVVSWNSII  Y 
Sbjct: 333 NGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYA 392

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
                  A   F  M  A   P  +T + + S  AQL            +M+        
Sbjct: 393 HHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGK 452

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITG---YAQNGLASEAIE-VFQ 321
                +V +  ++G ++ A    E   +  DV++W +L++    Y   GL     E +FQ
Sbjct: 453 EHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQ 512

Query: 322 MMEECNEINPNQGTYVSILPAYS 344
           +  +      + GTYV +   Y+
Sbjct: 513 LKPK------DVGTYVLLSNMYA 529



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +++ Y +     +A+  F    +  G+RP+ +T+   L +C  L    +G  +    +K 
Sbjct: 286 IMTAYTQNELFEDALQLFLDMEM-EGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKT 344

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G    + V  +L++MY + G    AR++F  MP RD  SWN++I GY   G A EA++  
Sbjct: 345 GHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAF 404

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M         +T   +L  CA+   +  G   +++ + + G++        ++ +  +
Sbjct: 405 HDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCR 464

Query: 177 FGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP-DLLTLV 234
            G +  A R  +   +  DVV+W S++++ +   +    H     + Q  ++P D+ T V
Sbjct: 465 VGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQ--LKPKDVGTYV 522

Query: 235 SLTSIVAQLN 244
            L+++ A+ N
Sbjct: 523 LLSNMYAKAN 532



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII 406
           G L  G  +HARV++    FDV     L+ +Y KCGR+  A  +F  +P  + V  N ++
Sbjct: 30  GELSLGKAVHARVVRAAR-FDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLM 88

Query: 407 SCHGIHGQGDKALNFFR 423
           S +   G+   AL   R
Sbjct: 89  SGYASSGRHRDALALLR 105


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/491 (42%), Positives = 302/491 (61%), Gaps = 4/491 (0%)

Query: 217 FFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 276
            ++ M    + P+  T   L             + +H  +++ G F  D    N ++ MY
Sbjct: 81  MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG-FGADGFSLNNLIHMY 139

Query: 277 AKLGIINSACAVFEGLPVKD--VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
                +  A  VF+ +P +D   +SWN +I  Y Q+    EA  +F  M   N +  ++ 
Sbjct: 140 VNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV-LDKF 198

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
              S+L A + +GAL QG  IH  + K+ +  D  +AT ++DMY KCG ++ A  +F ++
Sbjct: 199 VAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNEL 258

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
           P+     WN +I    +HG+G+ A+  F++M  E V PD ITFV++L+AC+HSGLV EG+
Sbjct: 259 PQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 318

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            YF  M E  G+KP ++H+GCMVDL GRAG L  A   I  MPV PDA + GAL+GACRI
Sbjct: 319 HYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 378

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           HGN ELG     ++ E++  N G YVL++N+YA+ G+WE V +VR L  DRG+KK PG+S
Sbjct: 379 HGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 438

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            IE  + VD F  G R HP+ ++IY +L  +   ++S+GYVPD   VL D++E+EKE+ L
Sbjct: 439 MIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPL 498

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
             HSE+LAIAFG++ + P   ++I KNLR+C DCH  +K IS++ +REII+RD NRFHHF
Sbjct: 499 YYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 558

Query: 695 KDGICSCGDYW 705
           + G CSC DYW
Sbjct: 559 RMGGCSCKDYW 569



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 181/386 (46%), Gaps = 14/386 (3%)

Query: 10  RLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 64
           R   A +C + ++  L   + P+ +T+PP+++AC     + +GK+IH  VLK GF  D F
Sbjct: 71  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 130

Query: 65  VAASLLHMYCRFGLANVARKLFDDMPVRD--SGSWNAMISGYCQSGNAVEALDILDEMRL 122
              +L+HMY  F     AR++FD+MP RD  S SWNAMI+ Y QS    EA  + D MRL
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 190

Query: 123 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 182
           E V +D    AS+L  C     +  G  IH YI K G+E +  ++  +I+MY K G +  
Sbjct: 191 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 250

Query: 183 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
           A  VF+++ ++ + SWN +I           A   F  M++  + PD +T V++ S  A 
Sbjct: 251 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 310

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
                  +    ++         +     +VD+  + G++  A  +   +PV        
Sbjct: 311 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 370

Query: 303 LITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHA---- 357
            + G  +    +E  E  Q+ ++  E+ P N G YV +   Y+  G      K+      
Sbjct: 371 ALVGACRIHGNTELGE--QIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMND 428

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGR 383
           R +K    F +  +   VD +   GR
Sbjct: 429 RGVKKAPGFSMIESESGVDEFIAGGR 454



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 180/395 (45%), Gaps = 32/395 (8%)

Query: 38  LKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW 97
           L +C  + + K+ H  +++LG   D      ++  +C                       
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK-FCAISK------------------- 66

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157
               SGY +   A   + +   M  + VS +  T   ++  C     I  G  IH +++K
Sbjct: 67  ----SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLK 122

Query: 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD--VVSWNSIIAAYEQSNDPITAH 215
            G   + F  NNLI+MY  F  +  A RVFD M +RD   VSWN++IAAY QSN    A 
Sbjct: 123 FGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAF 182

Query: 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275
             F  M+   +  D     S+ S    L      + +HG+I + G  + D  +   V+DM
Sbjct: 183 ALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIEL-DSKLATTVIDM 241

Query: 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335
           Y K G +  A  VF  LP K + SWN +I G A +G    AIE+F+ ME    + P+  T
Sbjct: 242 YCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMER-EMVAPDGIT 300

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQ 393
           +V++L A +H G + +G K + + +   L     +    C+VD+ G+ G +++A  L  +
Sbjct: 301 FVNVLSACAHSGLVEEG-KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 359

Query: 394 VPRSSSVP-WNAIISCHGIHGQGDKALNFFRQMLD 427
           +P +       A++    IHG  +      +++++
Sbjct: 360 MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 394


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/651 (35%), Positives = 360/651 (55%), Gaps = 14/651 (2%)

Query: 60  EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119
           E + F+   L+  Y R    + A   F ++  ++  S+  M+  Y ++    +AL +  +
Sbjct: 14  EKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKK 73

Query: 120 MRLEGVSMDPITVASILPVCAR--SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
              E +  +  T  ++L  CA    D +  G  IH + +  G   +L V N+LI+MYAK 
Sbjct: 74  SINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKC 133

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G  + A  VF++M  ++++S+ S+I AY  +   + A+  +  M   GI PD+    +  
Sbjct: 134 GSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAAL 193

Query: 238 SIVAQLNDCRNSRSVH---GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           ++   +   R   ++H   G   RR       +  NA+V MY + G I SA  VF+G+  
Sbjct: 194 AVCPTI---REGEAIHVKLGNHERR-----TPVCSNALVGMYGRFGRIASAKWVFDGIRY 245

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           KD+ S+N +I  +A+    S+AI ++  ME  N + PN  T+ S+L A S +GAL +G +
Sbjct: 246 KDLASYNNMIAVFAKYDDGSKAISLYIEMEGRN-LEPNLWTFTSVLDACSKLGALTEGKE 304

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH +V       DV   T LV+MY KCG   +A ++F      +   W +++S +   GQ
Sbjct: 305 IHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQ 364

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
               L  +++M  EGV PD +TF ++  ACSHSGL  EG  YF  M+E+  I P   HY 
Sbjct: 365 SQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYT 424

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           CM+DL GR G L  A   ++ MP  PD   W  LL AC+++G++++GA A  R+ E++  
Sbjct: 425 CMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPP 484

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           + G Y+LM N+YA  GKW  V EV+ + + RGL K PG S IE   ++  F  G+  HP 
Sbjct: 485 DSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPL 544

Query: 595 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 654
            ++I   L+ +  ++   GY PD   VL DV E+ K  +L  HSER+A+  G+++S   +
Sbjct: 545 NQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGA 604

Query: 655 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
            + I KNLR+C DCH++ K +S++  R+++VRDS+RFH F+ G CSCGDYW
Sbjct: 605 TLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 208/408 (50%), Gaps = 23/408 (5%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNL-----VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
            ++ ++   L+ +  T+  VLK+C +L      DGK+IH   +  GF  D+ V  SL+HM
Sbjct: 70  LFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHM 129

Query: 73  YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
           Y + G    A  +F+ M  ++  S+ +MI  Y  +   VEA ++  +M  EG+  D    
Sbjct: 130 YAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAY 189

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
           A+ L VC     I  G  IH+ +  H     +  SN L+ MY +FG +  A  VFD +  
Sbjct: 190 AAALAVCP---TIREGEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVFDGIRY 245

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           +D+ S+N++IA + + +D   A   +  M+   ++P+L T  S+    ++L      + +
Sbjct: 246 KDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEI 305

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312
           H  + + G    DV    A+V+MYAK G  + A AVF    +K+V +W +L++ Y+Q G 
Sbjct: 306 HKKV-KGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQ 364

Query: 313 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA- 371
           +   +E +Q M  C  + P+  T+ +I  A SH G   +G+ ++ R ++     D ++  
Sbjct: 365 SQYRLEAYQRM-NCEGVIPDDVTFTAIFNACSHSGLPDEGL-LYFRAMRE----DHWIVP 418

Query: 372 -----TCLVDMYGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIHG 413
                TC++D+ G+ GR+ +A  L   +P S   V W  ++S   ++G
Sbjct: 419 LQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYG 466


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/623 (38%), Positives = 356/623 (57%), Gaps = 12/623 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVD-GKKIHCSVLKL 57
           M++ YV+ G    A+  F +    S ++P+  TF  VL  C +  ++D G ++H   +  
Sbjct: 130 MLNGYVKNGDSGNAIKIFLEMR-HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSC 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E D  VA +LL MY +      ARKLFD  P  D  SWN +ISGY Q+G   EA  + 
Sbjct: 189 GLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLF 248

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M   G+  D IT AS LP      ++     IH YI++H +  ++F+ + LI++Y K 
Sbjct: 249 RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC 308

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             +  A ++  Q    D V   ++I+ Y  +     A   F  + Q  ++P  +T  S+ 
Sbjct: 309 RDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L      + +HG I++     E   +G+A++DMYAK G ++ AC VF  +  KD 
Sbjct: 369 PAFAGLAALNLGKELHGSIIKTK-LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDA 427

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI---LPAYSHVGALRQGIK 354
           I WN++IT  +QNG   EAI +F+ M     +   +   VSI   L A +++ AL  G +
Sbjct: 428 ICWNSMITSCSQNGRPGEAINLFRQMG----MEGTRYDCVSISGALSACANLPALHYGKE 483

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 414
           IH  +IK  L  D++  + L+DMY KCG ++ +  +F ++   + V WN+IIS +G HG 
Sbjct: 484 IHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGD 543

Query: 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 474
             + L  F +ML  G++PDH+TF+ +++AC H+G V EG RY+H+M EE+GI   ++HY 
Sbjct: 544 LKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYA 603

Query: 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534
           C+ D+FGRAG L  A   I +MP  PDA +WG LLGAC IHGN+EL  VAS  LF++D  
Sbjct: 604 CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 663

Query: 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 594
           N GYYVL++N+ A  GKW  V +VRS+ ++RG++K PG+S IEVNN   +F   + +HP 
Sbjct: 664 NSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPL 723

Query: 595 YEKIYDELRNLTAKMKSLGYVPD 617
             +IY  L +L  ++K  GYVP 
Sbjct: 724 TAQIYSVLDSLLLELKKEGYVPQ 746



 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 167/522 (31%), Positives = 287/522 (54%), Gaps = 8/522 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           MI  +   G+ + A+  FY   L +G+ PD YTFP V+KAC   +++  GK +H +V  +
Sbjct: 29  MIRGFTMMGQFNYAL-LFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLM 87

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G + DVFV +SL+ +Y   G  + A+ LFD++P +DS  WN M++GY ++G++  A+ I 
Sbjct: 88  GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF 147

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            EMR   +  + +T A +L VCA    +  G  +H   V  GLE +  V+N L+ MY+K 
Sbjct: 148 LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKC 207

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             ++ A ++FD   + D+VSWN II+ Y Q+     A   F  M  AGI+PD +T  S  
Sbjct: 208 QCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
             V +L   ++ + +HG+I+R    + DV + +A++D+Y K   +  A  +       D 
Sbjct: 268 PCVNELLSLKHCKEIHGYIIRHAVVL-DVFLKSALIDIYFKCRDVEMAQKILCQSSSFDT 326

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +   T+I+GY  NG   EA+E F+ + +   + P   T+ SI PA++ + AL  G ++H 
Sbjct: 327 VVCTTMISGYVLNGKNKEALEAFRWLVQ-ERMKPTSVTFSSIFPAFAGLAALNLGKELHG 385

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK  L     V + ++DMY KCGR+D A  +F ++    ++ WN++I+    +G+  +
Sbjct: 386 SIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+N FRQM  EG R D ++    L+AC++   +  G+   H +  +  ++  L     ++
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKE-IHGLMIKGPLRSDLYAESSLI 504

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
           D++ + G+L  +      M  R + S W +++ A   HG+++
Sbjct: 505 DMYAKCGNLNFSRRVFDRMQERNEVS-WNSIISAYGNHGDLK 545



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 230/446 (51%), Gaps = 6/446 (1%)

Query: 72  MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131
           MY R G    A+ LF  + +  + +WN MI G+   G    AL    +M   GVS D  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
              ++  C    ++  G ++H  +   GL+ ++FV ++LI +YA+ G +  A  +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           ++D V WN ++  Y ++ D   A   F  M+ + I+P+ +T   + S+ A          
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +HG  +  G  + D  + N ++ MY+K   + +A  +F+  P  D++SWN +I+GY QNG
Sbjct: 181 LHGIAVSCGLEL-DSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNG 239

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
           L  EA  +F+ M     I P+  T+ S LP  + + +L+   +IH  +I++ +  DVF+ 
Sbjct: 240 LMGEAEHLFRGMISAG-IKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           + L+D+Y KC  ++ A  +  Q     +V    +IS + ++G+  +AL  FR ++ E ++
Sbjct: 299 SALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 432 PDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           P  +TF S+  A +    ++ G+  +  +++ +   K H+     ++D++ + G L +A 
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG--SAILDMYAKCGRLDLAC 416

Query: 491 NFIQNMPVRPDASIWGALLGACRIHG 516
             + N     DA  W +++ +C  +G
Sbjct: 417 R-VFNRITEKDAICWNSMITSCSQNG 441


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/596 (38%), Positives = 339/596 (56%), Gaps = 46/596 (7%)

Query: 149 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           L IH  +++ GL  +  ++  L   YA  G + H++ +F +    +V  W  II A+   
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC--RNSRSVHGFIMRRGWFMEDV 266
           +    A  +++ M    IQP+  TL SL      L  C    +R+VH   ++ G     +
Sbjct: 100 DLFHHALSYYSQMLTHPIQPNAFTLSSL------LKACTLHPARAVHSHAIKFG-LSSHL 152

Query: 267 IIGNAVVDMYA-------------------------------KLGIINSACAVFEGLPVK 295
            +   +VD YA                               K G++  A  +FEG+ +K
Sbjct: 153 YVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMK 212

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQ------MMEECNEINPNQGTYVSILPAYSHVGAL 349
           DV+ WN +I GYAQ+G  +EA+  F+            ++ PN+ T V++L +   VGAL
Sbjct: 213 DVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGAL 272

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409
             G  +H+ V  N +  +V V T LVDMY KCG ++DA  +F  +     V WN++I  +
Sbjct: 273 ECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGY 332

Query: 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469
           GIHG  D+AL  F +M   GV+P  ITFV++LTAC+H+GLVS+G   F  M++ +G++P 
Sbjct: 333 GIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPK 392

Query: 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529
           ++HYGCMV+L GRAG +  A++ +++M V PD  +WG LL ACRIH N+ LG   ++ L 
Sbjct: 393 VEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILV 452

Query: 530 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN 589
                + G YVL+SN+YA    W GV +VRS+ +  G++K PG SSIEV N+V  F  G+
Sbjct: 453 SNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGD 512

Query: 590 RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649
           R HP+ + IY  L  +   +K   Y P    VL D+ E EKE  L  HSE+LA+AFG+IS
Sbjct: 513 RRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLIS 572

Query: 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           + P + I+I KNLRVC DCH   K +S+I+ R+II+RD NRFHHF++G CSC DYW
Sbjct: 573 TSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 181/405 (44%), Gaps = 48/405 (11%)

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +IH ++L+ G      +   L   Y   G  + +  LF   P  +   W  +I+ +    
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168
               AL    +M    +  +  T++S+L  C     +     +H + +K GL  +L+VS 
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVST 156

Query: 169 NLINMYAKFGMMRHALRVFDQMMER-------------------------------DVVS 197
            L++ YA+ G +  A ++FD M ER                               DVV 
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 198 WNSIIAAYEQSNDPITAHGFF-------TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
           WN +I  Y Q   P  A  FF              ++P+ +T+V++ S   Q+      +
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
            VH ++   G    +V +G A+VDMY K G +  A  VF+ +  KDV++WN++I GY  +
Sbjct: 277 WVHSYVENNG-IKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIH 335

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G + EA+++F  M  C  + P+  T+V++L A +H G + +G ++    +K+    +  V
Sbjct: 336 GFSDEALQLFHEM-CCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDS-MKDGYGMEPKV 393

Query: 371 A--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIH 412
               C+V++ G+ GR+ +A  L   +      V W  ++    IH
Sbjct: 394 EHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIH 438



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
           +Y   LT  ++P+ +T   +LKAC  L   + +H   +K G    ++V+  L+  Y R G
Sbjct: 108 YYSQMLTHPIQPNAFTLSSLLKAC-TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGG 166

Query: 78  LANVARKLFDDMPVR-------------------------------DSGSWNAMISGYCQ 106
               A+KLFD MP R                               D   WN MI GY Q
Sbjct: 167 DVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQ 226

Query: 107 SGNAVEALDILDEMRLE-------GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
            G   EAL    +M +         V  + ITV ++L  C +   +  G  +H Y+  +G
Sbjct: 227 HGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNG 286

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           ++ N+ V   L++MY K G +  A +VFD M  +DVV+WNS+I  Y        A   F 
Sbjct: 287 IKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFH 346

Query: 220 TMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG-NAVVDMYAK 278
            M   G++P  +T V++ +  A          V    M+ G+ ME  +     +V++  +
Sbjct: 347 EMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDS-MKDGYGMEPKVEHYGCMVNLLGR 405

Query: 279 LGIINSACAVFEGLPVK-DVISWNTLI 304
            G +  A  +   + V+ D + W TL+
Sbjct: 406 AGRMQEAYDLVRSMEVEPDPVLWGTLL 432



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 11/215 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTS------GLRPDFYTFPPVLKACRN---LVDGKKIH 51
           MI  Y + G  +EA+  F +  +         +RP+  T   VL +C     L  GK +H
Sbjct: 220 MIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVH 279

Query: 52  CSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 111
             V   G + +V V  +L+ MYC+ G    ARK+FD M  +D  +WN+MI GY   G + 
Sbjct: 280 SYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSD 339

Query: 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK-HGLEFNLFVSNNL 170
           EAL +  EM   GV    IT  ++L  CA +  +  G  +   +   +G+E  +     +
Sbjct: 340 EALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCM 399

Query: 171 INMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +N+  + G M+ A  +   M +E D V W +++ A
Sbjct: 400 VNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWA 434


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 387/738 (52%), Gaps = 72/738 (9%)

Query: 6   VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWD 62
           +R  +  +A++ F +    S    D  T   +L+AC   R L +GK+IH  V++ G   +
Sbjct: 208 LRSEKWEDALELFRRMQSASAKATDG-TIVKLLQACGKLRALNEGKQIHGYVIRFGRVSN 266

Query: 63  VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 122
             +  S++ MY R     +AR  FD     +S SWN++IS Y  +     A D+L EM  
Sbjct: 267 TSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMES 326

Query: 123 EGVSMDPITVASILP---VCARSDNILS-------------------------------- 147
            GV  D IT  S+L    +    +N+L+                                
Sbjct: 327 SGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNL 386

Query: 148 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207
           G  IH YI++  LE++++V  +L++ Y K   +  A  VF     +++ +WNS+I+ Y  
Sbjct: 387 GKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTY 446

Query: 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267
                 A      M++ GI+PDL+T  SL S  +      + RS                
Sbjct: 447 KGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSM-----SGRSEEAL------------ 489

Query: 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 327
              AV++    LG+              +V+SW  +I+G  QN    +A++ F  M+E N
Sbjct: 490 ---AVINRIKSLGL------------TPNVVSWTAMISGCCQNENYMDALQFFSQMQEEN 534

Query: 328 EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387
            + PN  T  ++L A +    L+ G +IH   +++    D+++AT L+DMYGK G++  A
Sbjct: 535 -VKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVA 593

Query: 388 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447
             +F  +   +   WN ++  + I+G G++    F +M   GVRPD ITF +LL+ C +S
Sbjct: 594 HEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNS 653

Query: 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507
           GLV +G +YF  M+ ++ I P ++HY CMVDL G+AG L  A +FI  +P + DASIWGA
Sbjct: 654 GLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGA 713

Query: 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567
           +L ACR+H ++++  +A+  L  ++  N   Y LM NIY+   +W  V+ ++      G+
Sbjct: 714 VLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGV 773

Query: 568 KKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627
           K    WS I+V   + +F T  ++HP+  +IY EL  L +++K LGYV D + V Q++++
Sbjct: 774 KIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDD 833

Query: 628 DEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRD 687
            EKE +L SH+E+LA+ +G++ +   SPI++ KN R+C DCH   K+IS    REI +RD
Sbjct: 834 SEKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRD 893

Query: 688 SNRFHHFKDGICSCGDYW 705
             RFHHF +G CSC D W
Sbjct: 894 GGRFHHFMNGECSCKDRW 911



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 238/532 (44%), Gaps = 73/532 (13%)

Query: 26  GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G++ D      VLK C  L++   G ++H  ++K GF  DV ++ +L+++Y ++   + A
Sbjct: 126 GVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGA 185

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
            ++FD+ P+++   WN ++    +S    +AL++   M+         T+  +L  C + 
Sbjct: 186 NQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKL 245

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  IH Y+++ G   N  + N++++MY++   +  A   FD   + +  SWNSII
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSII 305

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL-------------------------- 236
           ++Y  ++    A      M+ +G++PD++T  SL                          
Sbjct: 306 SSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFK 365

Query: 237 ---TSIVAQLN-----DCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
               SI + L       C N  + +HG+IMR      DV +  ++VD Y K   ++ A  
Sbjct: 366 PDSCSITSALQAVIGLGCFNLGKEIHGYIMRSK-LEYDVYVCTSLVDKYIKNDCLDKAEV 424

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
           VF     K++ +WN+LI+GY   GL   A ++   M+E   I P+  T+ S++  YS  G
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKE-EGIKPDLVTWNSLVSGYSMSG 483

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
              + + +  R+    L  +V                               V W A+IS
Sbjct: 484 RSEEALAVINRIKSLGLTPNV-------------------------------VSWTAMIS 512

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
               +     AL FF QM +E V+P+  T  +LL AC+ S L+  G+   H      G  
Sbjct: 513 GCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEE-IHCFSMRHGFL 571

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519
             +     ++D++G+ G L +AH   +N+  +     W  ++    I+G+ E
Sbjct: 572 DDIYIATALIDMYGKGGKLKVAHEVFRNIKEKT-LPCWNCMMMGYAIYGHGE 622



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 242/533 (45%), Gaps = 43/533 (8%)

Query: 29  PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFD 87
           P F  F       R L   +++H  ++K+  + + V +  S++  Y +FG    A K+F 
Sbjct: 29  PKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFF 88

Query: 88  DMPVRDSGSWNAMISGYCQ-SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 146
               R+   WN+ I  +    G++ E L +  E+  +GV  D   +  +L +C     + 
Sbjct: 89  VGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELW 148

Query: 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206
            G+ +H  +VK G   ++ +S  LIN+Y K+  +  A +VFD+   ++   WN+I+ A  
Sbjct: 149 LGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANL 208

Query: 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +S     A   F  MQ A  +    T+V L     +L      + +HG+++R G  + + 
Sbjct: 209 RSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG-RVSNT 267

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
            I N++V MY++   +  A   F+     +  SWN++I+ YA N   + A ++ Q ME  
Sbjct: 268 SICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESS 327

Query: 327 NEINPN-------------QGTY----------------------VSILPAYSHVGALRQ 351
             + P+             QG+Y                       S L A   +G    
Sbjct: 328 G-VKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNL 386

Query: 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI 411
           G +IH  ++++ L +DV+V T LVD Y K   +D A  +F+     +   WN++IS +  
Sbjct: 387 GKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTY 446

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
            G  D A     QM +EG++PD +T+ SL++  S SG   E     + ++   G+ P++ 
Sbjct: 447 KGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIK-SLGLTPNVV 505

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGACRIHGNMELG 521
            +  M+    +  +   A  F   M    V+P+++    LL AC     +++G
Sbjct: 506 SWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIG 558


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 346/616 (56%), Gaps = 47/616 (7%)

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEF--NLFVSNNLINMYAKFGMMRHALRVFDQM-- 190
           +L  CAR  ++  G  +H  I+  G+      F+ N L+  YA  G    A +VFD++  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
             +D V W +++  + + N    A   F  M++ G++PD +TLV L    A+L D     
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC------------------------ 286
             HG +++ G    +    NAV+DMYAK G++  A                         
Sbjct: 139 QGHGCMVKMGLGGVEKAC-NAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRS 197

Query: 287 -------AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 339
                   VF+ +P ++ ++W  +I GY  +GL  E+  + + M    E+  N  T  SI
Sbjct: 198 EGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSI 257

Query: 340 LPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398
           L A S  G L  G  +HA  +K      ++ V T +VDMY KCGRI  A   F ++P+ +
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRN 317

Query: 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458
            V WNA++S   +HG G  AL+ F QM  E  +PD +TF S+L+ACSHSGLV +G  YF 
Sbjct: 318 VVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFG 376

Query: 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 518
            ++  +GI P ++HY CMVDL GRAG L  A   ++ MP+RP+  + G+LLG+C IHG +
Sbjct: 377 NLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKL 436

Query: 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578
           +LG      L ++D +N  Y++L+SN+YA  GK    + +R + + RG+KK PG SSI V
Sbjct: 437 QLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHV 496

Query: 579 NNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSF-------VLQD--VEEDE 629
             +V  F  G+++HP+  ++Y+ L  +  +++  GY P+ +         L+D  VE++E
Sbjct: 497 GGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEE 556

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           KE  L SHSE+LAI FG+IS+ P  P+ IFKNLR+C DCH+  K +S+I  REI++RD N
Sbjct: 557 KEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRN 616

Query: 690 RFHHFKDGICSCGDYW 705
           RFH FK+G CSC DYW
Sbjct: 617 RFHCFKEGSCSCCDYW 632



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 239/523 (45%), Gaps = 104/523 (19%)

Query: 37  VLKAC---RNLVDGKKIHCSVLKLGFEW--DVFVAASLLHMYCRFGLANVARKLFDDMPV 91
           +L++C    +L  G+++H +++  G     + F+  +LL  Y   G A  ARK+FD++P 
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 92  --RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
             +D+  W  ++  + +   + EAL I  EMR  GV  D +T+  +   CAR  +++ G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR------------------------ 185
             H  +VK GL       N +++MYAK G+M  A R                        
Sbjct: 139 QGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198

Query: 186 -------VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ---QAGIQPDLLTLVS 235
                  VFD+M ER+ V+W  +IA Y  S   +T   F    +      ++ + +TL S
Sbjct: 199 GVRNGRVVFDEMPERNEVAWTIMIAGYLDSG--LTQESFALVREMIFDLEMELNYVTLCS 256

Query: 236 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295
           + +  +Q  D    R VH + ++      ++++G A+VDMYAK G I+ A   F+ +P +
Sbjct: 257 ILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQR 316

Query: 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355
           +V+SWN +++G A +GL   A+++F  M +  E  P+  T+ S+L A SH G + QG   
Sbjct: 317 NVVSWNAMLSGLAMHGLGRAALDIFPQMFK--EAKPDDVTFTSVLSACSHSGLVDQG--- 371

Query: 356 HARVIKNCLCF----DVFVAT-------CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 404
                  C  F     V+  T       C+VD+ G+ GR+++A  L  ++P         
Sbjct: 372 -------CFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMP--------- 415

Query: 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464
                                    +RP+ +   SLL +CS  G +  G+   H++QE  
Sbjct: 416 -------------------------IRPNEVVLGSLLGSCSIHGKLQLGE---HLLQELV 447

Query: 465 GIKPHLKHYGCMV-DLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            + P    Y  ++ +++  AG    A++  Q +  R    + G
Sbjct: 448 QLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPG 490



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI+ Y+  G   E+     +      +  ++ T   +L AC    +L+ G+ +H   LK 
Sbjct: 221 MIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKT 280

Query: 58  G-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
              E ++ V  +++ MY + G  ++A K F  MP R+  SWNAM+SG    G    ALDI
Sbjct: 281 KEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDI 340

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSG 148
             +M  E    D +T  S+L  C+ S  +  G
Sbjct: 341 FPQMFKEA-KPDDVTFTSVLSACSHSGLVDQG 371



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 7/186 (3%)

Query: 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQ 393
           Y  +L + +   +L  G ++HA +I   +    + F+   L+  Y  CG    A  +F +
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 394 VPRS--SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451
           +P S   +V W  ++ C   H   D+AL  F +M   GV+PD +T V L   C+  G V 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-G 510
            G +  H    + G+    K    ++D++ ++G +G A      M  +   S W  +L G
Sbjct: 136 VGAQG-HGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVS-WTVILDG 193

Query: 511 ACRIHG 516
             R  G
Sbjct: 194 VIRSEG 199


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 340/585 (58%), Gaps = 25/585 (4%)

Query: 121 RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180
           R  G S  P T    +P+   S+ +     IH  I  H L  N  V   LI+       +
Sbjct: 31  RAHGPSRSPET--HFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSL 88

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240
            +AL +F      ++  +N++I    +++    +   F  M +  I+PD LTL  +   V
Sbjct: 89  DYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV 148

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           A L D    R +HG +M+ G    D  +  ++VDMY K+G +     +F+  P ++    
Sbjct: 149 AALVDVGLGRCLHGGVMKLGLEF-DSFVRVSLVDMYVKIGELGFGLQLFDESPQRN---- 203

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
                        +E+I ++      N + PN  T VS L A + +GAL+ G +IH  + 
Sbjct: 204 ------------KAESILLW------NGVRPNDLTVVSALLACTKIGALQVGERIHNYLS 245

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN 420
            N    +  + T LVDMY KCG I  A  +F +      + W+ +I    IHG  D+AL 
Sbjct: 246 SNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQ 305

Query: 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480
            F +M   G+ PD + F+++LTACSHSG V +G  +F  M+ ++ I+P +KHY  +VDL 
Sbjct: 306 CFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLL 365

Query: 481 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540
           GRAG L  A +FIQ+MP+ PD  IWGAL  ACR H N+E+  + +++L +++ ++ G YV
Sbjct: 366 GRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYV 425

Query: 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD 600
            +SN+YA VG+WE V+ VR+L ++RG++K PGWS IEV  +V  F  G+  H + E+I  
Sbjct: 426 FLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISL 485

Query: 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFK 660
           +L  +TA  K  GY+P+ ++VL ++EE+EKE  L SHSE+LA+AFG+IS+ P S I+I K
Sbjct: 486 KLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVK 545

Query: 661 NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           NLRVCGDCH+  K+ S+++ REII+RD  RFHHFKDG CSCGDYW
Sbjct: 546 NLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 43/341 (12%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           +   L   +RPD  T P VLK+   LVD   G+ +H  V+KLG E+D FV  SL+ MY +
Sbjct: 126 FVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVK 185

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
            G      +LFD+ P R                N  E++ + +     GV  + +TV S 
Sbjct: 186 IGELGFGLQLFDESPQR----------------NKAESILLWN-----GVRPNDLTVVSA 224

Query: 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
           L  C +   +  G  IH Y+  +G + N  +   L++MYAK G ++ A RVF +   +D+
Sbjct: 225 LLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDL 284

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
           ++W+ +I  +        A   F  M+ AGI PD +  +++      L  C +S +V   
Sbjct: 285 LTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI------LTACSHSGNVDQG 338

Query: 256 I-----MRRGWFMEDVIIG-NAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYA 308
           +     MR  + +E  +     +VD+  + G ++ A +  + +P+  D + W  L     
Sbjct: 339 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACR 398

Query: 309 QNGLASEAIEVFQMM-EECNEINPNQ-GTYVSILPAYSHVG 347
               A + IE+ ++  E+  ++ P   G+YV +   Y+ VG
Sbjct: 399 ----AHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVG 435



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 1   MISVYVRCGRLSEAVDCFYQ---------FTLTSGLRPDFYTFPPVLKACRN---LVDGK 48
           ++ +YV+ G L   +  F +           L +G+RP+  T    L AC     L  G+
Sbjct: 179 LVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVGE 238

Query: 49  KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 108
           +IH  +   GF+ +  +  +L+ MY + G    A ++F +   +D  +W+ MI G+   G
Sbjct: 239 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG 298

Query: 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL-LIHLYIVKHGLEFNLFVS 167
              +AL    +M+  G++ D +   +IL  C+ S N+  GL       + + +E  +   
Sbjct: 299 CFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHY 358

Query: 168 NNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
             ++++  + G +  AL     M +  D V W ++  A
Sbjct: 359 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 396


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/462 (45%), Positives = 297/462 (64%), Gaps = 6/462 (1%)

Query: 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITG 306
           +  + +H  +   G F  D +I   +V++Y     ++SA  +F+ +P  ++  WN LI G
Sbjct: 92  KPGKQLHAQVCLAG-FGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRG 150

Query: 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366
           YA NG    A++++  M +   + P+  T+  +L A + + A+  G +IH  V++     
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLV-PDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV---PWNAIISCHGIHGQGDKALNFFR 423
           DVFV   L+DMY KCG +  A  +F ++    +V    WNA+I+ + +HG   +AL+ F 
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFE 269

Query: 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483
           +M +   +PDHITFV +L+ACSH GL+ EG  +F  M  ++ I P ++HY CMVDL G +
Sbjct: 270 EM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 328

Query: 484 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543
           G L  A+N I  M V PD+ +WGALL +C+IH N+ELG +A +RL E++ ++ G YV++S
Sbjct: 329 GRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILS 388

Query: 544 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 603
           NIYA  GKWEGV ++R L  DR LKK+   S IEV NKV  F +G+ +HP  ++IY EL 
Sbjct: 389 NIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELE 448

Query: 604 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 663
            +   MK  GY P    V  DVE+DEK +++ SHSERLAIAFG+IS+PP + + I KNLR
Sbjct: 449 RVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLR 508

Query: 664 VCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +C DCH   KFIS+ITEREI VRD NR+HHFKDG+CSCGDYW
Sbjct: 509 ICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 52/342 (15%)

Query: 24  TSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80
           ++ L P +  +  +L++C   + +  GK++H  V   GF +D  +A  L+++YC     +
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 81  VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140
            AR LFD +P  +   WN +I GY  +G    A+ +  +M   G+  D  T   +L  CA
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187

Query: 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD---VVS 197
               I  G  IH ++V+ G E ++FV   LI+MYAK G +  A  VFD+++ RD   VVS
Sbjct: 188 ALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVS 247

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++I  Y        A   F  M +   +PD +T V + S  +           HG ++
Sbjct: 248 WNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACS-----------HGGLL 295

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
             GW   + +I +  +D                      V  +  ++     +G   EA 
Sbjct: 296 EEGWMFFETMIRDYKID--------------------PTVQHYTCMVDLLGHSGRLDEAY 335

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV 359
            +   M    ++ P+ G +          GAL    KIHA V
Sbjct: 336 NLIMQM----KVLPDSGVW----------GALLNSCKIHANV 363



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 8/146 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I  Y   G    AV  +YQ     GL PD +TFP VLKAC  L     G++IH  V++ 
Sbjct: 147 LIRGYAWNGPYEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT 205

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS---GSWNAMISGYCQSGNAVEAL 114
           G+E DVFV A+L+ MY + G    AR++FD + VRD+    SWNAMI+GY   G+A EAL
Sbjct: 206 GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEAL 265

Query: 115 DILDEMRLEGVSMDPITVASILPVCA 140
           D+ +EM       D IT   +L  C+
Sbjct: 266 DLFEEMN-RVAKPDHITFVGVLSACS 290



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
           E   + P    Y S+L +     A++ G ++HA+V      FD  +AT LV++Y  C  +
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444
             A  LF ++P+ +   WN +I  +  +G  + A+  + QM D G+ PD+ TF  +L AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 504
           +    +  G R  H    + G +  +     ++D++ + G +G A      + VR DA +
Sbjct: 187 AALSAIEHG-REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVL 244

Query: 505 ---WGALLGACRIHGNMELGAVASDRLFE 530
              W A++    +HG+    A  +  LFE
Sbjct: 245 VVSWNAMITGYAMHGH----ATEALDLFE 269


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 353/588 (60%), Gaps = 14/588 (2%)

Query: 130 ITVASILPVCARSDNILSGLL-IHLYIVKHGLEFNLFV-------SNNLINM-YAKFGMM 180
           +T  +IL +     N LS L  IH +I+K GL+ N  +       S+NL ++ YA   + 
Sbjct: 15  LTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLF 74

Query: 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQAGIQPDLLTLVSLTSI 239
             +          D   +N++I AY Q+ D  + +  F+ TM + G+ P+  T   +   
Sbjct: 75  PPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKG 134

Query: 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI--INSACAVFEGLPVKDV 297
            A +   R  + VHG +++ G F EDV + N ++ MY  LG      A  VF+  P  D 
Sbjct: 135 CAGIGSLRLGKCVHGCVVKFG-FEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDT 193

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ++W+ +I G+ + G +S A+++F+ M+    + P++ T VS+L A + +GAL  G  + +
Sbjct: 194 VTWSAMIAGFVRLGCSSRAVDLFREMQVMG-VCPDEITMVSVLSACADLGALELGKWVES 252

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            V K  +   V +   L+DM+ KCG +D A+ LF Q+   + V W ++I+   +HG+G  
Sbjct: 253 YVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLD 312

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A++ F +M++ G+ PD + F+ +L+ACSHSGLV +G+ YF  M+  F I P ++HYGCMV
Sbjct: 313 AVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMV 372

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL  R G +  A  F+Q MP  P+  IW  ++ AC   G ++LG   S  L + +  +  
Sbjct: 373 DLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHES 432

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL+SNIYA + +WE   +VR +   RG+KK PG + IEVNN++  F  G+++H +Y++
Sbjct: 433 NYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKE 492

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQ 657
           IY+ +  +  ++K  GYVP  S VL D++E++KE  L  HSE+LAIAF ++++PP + I+
Sbjct: 493 IYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIR 552

Query: 658 IFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I KNLRVC DCH+ TKFIS++  REI+VRD NRFHHFK+G+CSC D+W
Sbjct: 553 IVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 155/300 (51%), Gaps = 6/300 (2%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC 74
           FY+  L  G+ P+ +TFP VLK C    +L  GK +H  V+K GFE DV V  +L+HMYC
Sbjct: 112 FYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYC 171

Query: 75  RFGLA--NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132
             G      A K+FDD P  D+ +W+AMI+G+ + G +  A+D+  EM++ GV  D IT+
Sbjct: 172 CLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITM 231

Query: 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 192
            S+L  CA    +  G  +  Y+ K  +  ++ + N LI+M+AK G +  A+++F QM  
Sbjct: 232 VSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDS 291

Query: 193 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252
           R +VSW S+IA        + A   F  M + GI PD +  + + S  +        R  
Sbjct: 292 RTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYY 351

Query: 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNG 311
            G + R    +  V     +VD+  + G +  A    + +P + + I W T+IT     G
Sbjct: 352 FGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATG 411



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 12/212 (5%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI+ +VR G  S AVD F +  +  G+ PD  T   VL AC +L     GK +   V K 
Sbjct: 199 MIAGFVRLGCSSRAVDLFREMQVM-GVCPDEITMVSVLSACADLGALELGKWVESYVEKK 257

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
                V +  +L+ M+ + G  + A KLF  M  R   SW ++I+G    G  ++A+ + 
Sbjct: 258 NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLF 317

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN----LINM 173
           DEM   G++ D +    +L  C+ S  +  G     Y       F++         ++++
Sbjct: 318 DEMVENGITPDDVAFIGVLSACSHSGLVDKG---RYYFGSMERNFSIVPKVEHYGCMVDL 374

Query: 174 YAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
             + G ++ A     +M  E + + W +II A
Sbjct: 375 LCRGGFVKEAFEFVQKMPFEPNQIIWRTIITA 406


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 336/557 (60%), Gaps = 3/557 (0%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYA--KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 208
           +H +I+K GL ++ F  +NL+   A  ++G M +A  +F Q+ E     +N++I     S
Sbjct: 49  VHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNS 108

Query: 209 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 268
            +   A   +  M + GI+PD  T   +    + L   +    +H  + + G    DV +
Sbjct: 109 MNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAG-LEGDVFV 167

Query: 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328
            N +++MY K G I  A  VFE +  K V SW+++I  +A   +  E + +   M     
Sbjct: 168 QNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGR 227

Query: 329 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388
               +   VS L A +H+G+   G  IH  +++N    +V V T L+DMY K G ++  +
Sbjct: 228 HRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGL 287

Query: 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448
            +F  + + +   +  II+   IHG+G +AL+ F  ML+EG+ PD + +V +L+ACSH+G
Sbjct: 288 CVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAG 347

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
           LV+EG + F+ +Q E  IKP ++HYGCMVDL GRAG L  A++ I++MP++P+  +W +L
Sbjct: 348 LVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSL 407

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           L AC++H N+E+G +A++ +F+++  N G Y++++N+YA   KW  V  +R+   ++ L 
Sbjct: 408 LSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLV 467

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           +TPG+S +E N  V  F + +++ P+ E IYD ++ +  ++K  GY PD S VL DV+ED
Sbjct: 468 QTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDED 527

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EK   L  HS++LAIAF +I +   S I+I +N+R+C DCH +TKFIS I EREI VRD 
Sbjct: 528 EKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDR 587

Query: 689 NRFHHFKDGICSCGDYW 705
           NRFHHFKDG CSC DYW
Sbjct: 588 NRFHHFKDGTCSCKDYW 604



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 193/382 (50%), Gaps = 9/382 (2%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--YCRFGLANVARKLFDDMPVRDS 94
           +LK C+++ + K++H  +LKLG  +D F  ++L+      R+G    A  +F  +    S
Sbjct: 36  LLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGS 95

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             +N MI G   S N  EAL +  EM   G+  D  T   +L  C+    +  G+ IH +
Sbjct: 96  FEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAH 155

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
           + K GLE ++FV N LINMY K G + HA  VF+QM E+ V SW+SII A+         
Sbjct: 156 VFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHEC 215

Query: 215 HGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
                 M   G  + +   LVS  S    L      R +HG ++R    + +V +  +++
Sbjct: 216 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISEL-NVAVKTSLI 274

Query: 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEINPN 332
           DMY K G +     VF+ +  K+  S+  +ITG A +G   EA+ VF  M+EE   + P+
Sbjct: 275 DMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEE--GLAPD 332

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
              YV +L A SH G + +G++   R+  ++ +   +    C+VD+ G+ G +  A  L 
Sbjct: 333 DVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLI 392

Query: 392 YQVP-RSSSVPWNAIISCHGIH 412
             +P + + V W +++S   +H
Sbjct: 393 KSMPIKPNDVVWRSLLSACKVH 414



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGKKIHCSVLKL 57
           MI   V    L EA+   Y   L  G+ PD +T+P VLKAC     L +G +IH  V K 
Sbjct: 101 MIRGNVNSMNLEEAL-LLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKA 159

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G E DVFV   L++MY + G    A  +F+ M  +   SW+++I  +       E L +L
Sbjct: 160 GLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLL 219

Query: 118 DEMRLEGV-SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
            +M  EG    +   + S L  C    +   G  IH  ++++  E N+ V  +LI+MY K
Sbjct: 220 GDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVK 279

Query: 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236
            G +   L VF  M +++  S+  II           A   F+ M + G+ PD +  V +
Sbjct: 280 SGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGV 339

Query: 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK- 295
            S  +              +         +     +VD+  + G++  A  + + +P+K 
Sbjct: 340 LSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKP 399

Query: 296 -DVISWNTLITG 306
            DV+ W +L++ 
Sbjct: 400 NDVV-WRSLLSA 410


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 369/663 (55%), Gaps = 38/663 (5%)

Query: 68  SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEM------- 120
           S++  Y   GL   AR++FD+MP R+  SWN ++SGY ++    EA ++ + M       
Sbjct: 53  SIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS 112

Query: 121 ---RLEGVSMDPITVASIL---PVCARSD---NILSGLLI---------HLYIVKHGLEF 162
               ++G   + + V + L    +  R++    ++ G LI          LY +  G   
Sbjct: 113 WTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGK-- 170

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           ++  S N+I    + G +  A  +FD+M ER+V++W ++I  Y Q+     A   F  M 
Sbjct: 171 DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP 230

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
           +        T VS TS++              F       M+ VI  NA++    ++G I
Sbjct: 231 EK-------TEVSWTSMLLGYTLSGRIEDAEEFF--EVMPMKPVIACNAMIVALGEVGEI 281

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
             A  VF+ +  +D  +W  +I  Y + G   EA+E+F  M+    + P+  + +SIL  
Sbjct: 282 VKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQR-QGVRPSFPSLISILSV 340

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            + + +L+ G ++HA +++     DV+VA+ L+ MY KCG +  A  +F + P    + W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMW 400

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462
           N+IIS +  HG G++AL  F +M   G  P+ +T +++LTACS+ G + EG   F  M+ 
Sbjct: 401 NSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMES 460

Query: 463 EFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGA 522
           +F + P ++HY C VD+ GRAG +  A   I +M ++PDA++WGALLGAC+ H  ++L  
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAE 520

Query: 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKV 582
           VA+ +LFE++ EN G Y+L+S+I A+  KW  V E+R   R + + K PG S IEV  KV
Sbjct: 521 VAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKV 580

Query: 583 DIFYTGN-RTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
            +F  G  R HP+   I   L      ++  GY PD S VL DV+E+EK   L+ HSERL
Sbjct: 581 HMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERL 640

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+A+G++  P   PI++ KNLRVCGDCH   K IS++TEREII+RD+NRFHHF +G CSC
Sbjct: 641 AVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSC 700

Query: 702 GDY 704
            DY
Sbjct: 701 RDY 703



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 218/442 (49%), Gaps = 26/442 (5%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV  + +++   CR G  + AR++FD+M  R+  +W  MI+GY Q+   V+    L E+ 
Sbjct: 171 DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQN-KRVDVARKLFEVM 229

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
            E   +   ++     +  R ++  +     +  +K      +   N +I    + G + 
Sbjct: 230 PEKTEVSWTSMLLGYTLSGRIED--AEEFFEVMPMKP-----VIACNAMIVALGEVGEIV 282

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241
            A RVFDQM +RD  +W  +I AYE+    + A   F  MQ+ G++P   +L+S+ S+ A
Sbjct: 283 KARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342

Query: 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 301
            L   +  R VH  ++ R  F  DV + + ++ MY K G +  A  VF+  P KD+I WN
Sbjct: 343 TLASLQYGRQVHAHLV-RCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWN 401

Query: 302 TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARV-I 360
           ++I+GYA +GL  EA++VF  M     + PN+ T ++IL A S+ G L +G++I   +  
Sbjct: 402 SIISGYASHGLGEEALKVFHEMPLSGTM-PNKVTLIAILTACSYGGKLEEGLEIFESMES 460

Query: 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKAL 419
           K C+   V   +C VDM G+ G++D AM L   +  +  +  W A++     H + D A 
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAE 520

Query: 420 NFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475
              +++ +  + P+    +I   S+  + S  G V+E       M++    K   K  GC
Sbjct: 521 VAAKKLFE--IEPENAGPYILLSSINASRSKWGDVAE-------MRKNMRTKNVSKFPGC 571

Query: 476 MVDLFGRAGHLGMAHNFIQNMP 497
                G+  H+      I+N P
Sbjct: 572 SWIEVGKKVHM-FTRGGIRNHP 592



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 190/446 (42%), Gaps = 67/446 (15%)

Query: 75  RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134
           R G  N ARK FD +  +  GSWN+++SGY  +G   EA  + DEM              
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMP------------- 75

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
                                     E N+   N L++ Y K  M+  A  VF+ M ER+
Sbjct: 76  --------------------------ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERN 109

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND---CRNSRS 251
           VVSW +++  Y Q    + A   F  M +          VS T +   L D     ++R 
Sbjct: 110 VVSWTAMVKGYVQEGMVVEAELLFWRMPER-------NEVSWTVMFGGLIDGGRIDDARK 162

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           ++  +  +     DV+    ++    + G ++ A  +F+ +  ++VI+W T+ITGY QN 
Sbjct: 163 LYDMMPGK-----DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNK 217

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
               A ++F++M E  E+     ++ S+L  Y+  G +    +    +        V   
Sbjct: 218 RVDVARKLFEVMPEKTEV-----SWTSMLLGYTLSGRIEDAEEFFEVMPMK----PVIAC 268

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             ++   G+ G I  A  +F Q+    +  W  +I  +   G   +AL  F QM  +GVR
Sbjct: 269 NAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVR 328

Query: 432 PDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           P   + +S+L+ C+    +  G Q + H+++ +F    ++     ++ ++ + G L  A 
Sbjct: 329 PSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVA--SVLMTMYVKCGELVKAK 386

Query: 491 NFIQNMPVRPDASIWGALLGACRIHG 516
                 P + D  +W +++     HG
Sbjct: 387 LVFDRFPSK-DIIMWNSIISGYASHG 411



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           MI  Y R G   EA++ F Q     G+RP F +   +L  C  L     G+++H  +++ 
Sbjct: 302 MIKAYERKGFELEALELFAQMQ-RQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ DV+VA+ L+ MY + G    A+ +FD  P +D   WN++ISGY   G   EAL + 
Sbjct: 361 QFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVF 420

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL------I 171
            EM L G   + +T+ +IL  C+    +  GL I        +E    V+  +      +
Sbjct: 421 HEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIF-----ESMESKFCVTPTVEHYSCTV 475

Query: 172 NMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           +M  + G +  A+ + + M ++ D   W +++ A
Sbjct: 476 DMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 144/346 (41%), Gaps = 59/346 (17%)

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I+  ++ G +  A + FD +  + + SWNSI++ Y  +  P  A   F  M +       
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPE------- 76

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
                                             +++  N +V  Y K  +I  A  VFE
Sbjct: 77  ---------------------------------RNIVSWNGLVSGYIKNRMIEEARNVFE 103

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +P ++V+SW  ++ GY Q G+  EA  +F  M E NE+     ++  +       G + 
Sbjct: 104 IMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEV-----SWTVMFGGLIDGGRID 158

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
              K++  +       DV  +T ++    + GR+D+A  +F ++   + + W  +I+ +G
Sbjct: 159 DARKLYDMMPGK----DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYG 214

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            + + D A   F  M ++      +++ S+L   + SG + + + +F +M     +KP +
Sbjct: 215 QNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVMP----MKPVI 266

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
                +V L G  G +  A      M  R +A+ W  ++ A    G
Sbjct: 267 ACNAMIVAL-GEVGEIVKARRVFDQMEDRDNAT-WRGMIKAYERKG 310



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 41/273 (15%)

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
            I+ R +     +  +  +   +++G IN A   F+ L  K + SWN++++GY  NGL  
Sbjct: 6   LILHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPR 65

Query: 315 EAIEVFQMMEECNEINPNQ--GTYVS------------ILPAYSHV-------GALRQGI 353
           EA ++F  M E N ++ N     Y+             I+P  + V       G +++G+
Sbjct: 66  EARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGM 125

Query: 354 KIHARVI------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
            + A ++      +N + + V     L+D     GRIDDA  L+  +P    V    +I 
Sbjct: 126 VVEAELLFWRMPERNEVSWTVMFGG-LID----GGRIDDARKLYDMMPGKDVVASTNMIG 180

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
                G+ D+A   F +M +  V    IT+ +++T    +  V   ++ F +M E+  + 
Sbjct: 181 GLCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTEVS 236

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
                +  M+  +  +G +  A  F + MP++P
Sbjct: 237 -----WTSMLLGYTLSGRIEDAEEFFEVMPMKP 264


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/538 (41%), Positives = 315/538 (58%), Gaps = 8/538 (1%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N L+  +   G    A R+F  M  RDV SWN++++   +S     A   F  M      
Sbjct: 84  NTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP----- 138

Query: 228 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287
             +   VS  ++V+    C    S      R     ED ++  A+V  Y  +G +  A  
Sbjct: 139 --VRNSVSWNAMVSGFA-CSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIK 195

Query: 288 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347
            FE +PV++++SWN ++ GY +N  A +A+ +F+ M     + PN  T  S+L   S++ 
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 255

Query: 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS 407
           AL  G +IH   +K  L  ++ V T LV MY KCG +  A  LF ++     V WNA+IS
Sbjct: 256 ALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMIS 315

Query: 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467
            +  HG G +A+N F +M DEGV P+ ITFV +LTAC H+GL   G + F  MQE +GI+
Sbjct: 316 GYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIE 375

Query: 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527
           P + HY CMVDL  RAG L  A +FI++MP  P  S +G LL ACR++ N+E   +A+ +
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 435

Query: 528 LFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYT 587
           L E D ++ G YV ++NIYA   +W+ V  VR   +D  + KTPG+S IE+   +  F +
Sbjct: 436 LIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRS 495

Query: 588 GNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGI 647
            +R HP+   I+++L  L  +MK +GYVPD  FVL DV+E  K  +L  HSE+LAIAFG+
Sbjct: 496 NDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGL 555

Query: 648 ISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           IS+     ++IFKNLRVCGDCHN  K IS I +REII+RD+ RFHHF+ G CSC DYW
Sbjct: 556 ISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 177/346 (51%), Gaps = 31/346 (8%)

Query: 62  DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 121
           DV    +LL  +   G A+ AR+LF  MPVRD  SWN M+SG  +SG   EA  +   M 
Sbjct: 79  DVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP 138

Query: 122 LEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181
           +     + ++  +++   A S ++ +      +      + +  +   +++ Y   G + 
Sbjct: 139 VR----NSVSWNAMVSGFACSGDMSTA---EEWFRNAPEKEDAVLWTAMVSGYMDIGNVV 191

Query: 182 HALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIV 240
            A++ F+ M  R++VSWN+++A Y +++    A   F TM ++A +QP+  TL S+    
Sbjct: 192 KAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300
           + L+     + +H + M+      ++ +G ++V MY K G ++SAC +F  +  +DV++W
Sbjct: 252 SNLSALGFGKQIHQWCMKL-LLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAW 310

Query: 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360
           N +I+GYAQ+G   EAI +F+ M++   + PN  T+V +L A  H G    GI+      
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKD-EGVEPNWITFVVVLTACIHTGLCDFGIQ------ 363

Query: 361 KNCLCFD-----------VFVATCLVDMYGKCGRIDDAMSLFYQVP 395
               CF+           V   +C+VD+  + G+++ A+     +P
Sbjct: 364 ----CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +++ YV+     +A+  F      + ++P+  T   VL  C NL     GK+IH   +KL
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 270

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
               ++ V  SL+ MYC+ G  + A  LF +M  RD  +WNAMISGY Q G+  EA+++ 
Sbjct: 271 LLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLF 330

Query: 118 DEMRLEGVSMDPITVASILPVC 139
           + M+ EGV  + IT   +L  C
Sbjct: 331 ERMKDEGVEPNWITFVVVLTAC 352



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 11/254 (4%)

Query: 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324
           DV+  N ++  +   G  + A  +F  +PV+DV SWNT+++G +++G   EA  VF  M 
Sbjct: 79  DVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP 138

Query: 325 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384
             N ++ N     +++  ++  G +    +      +     D  + T +V  Y   G +
Sbjct: 139 VRNSVSWN-----AMVSGFACSGDMSTAEEWFRNAPEK---EDAVLWTAMVSGYMDIGNV 190

Query: 385 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTA 443
             A+  F  +P  + V WNA+++ +  +   D AL  FR M+ E  V+P+  T  S+L  
Sbjct: 191 VKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 250

Query: 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS 503
           CS+   +  G++  H    +  +  +L     +V ++ + G L  A      M  R D  
Sbjct: 251 CSNLSALGFGKQ-IHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR-DVV 308

Query: 504 IWGALLGACRIHGN 517
            W A++     HG+
Sbjct: 309 AWNAMISGYAQHGD 322



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 373 CLVDMYGKC-GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
           CL+  Y +  GR+ DA  LF ++P    V +N ++ CH   G  D A   F  M    VR
Sbjct: 53  CLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASM---PVR 109

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
            D  ++ ++++  S SG V E +  F  M     +      +  MV  F  +G +  A  
Sbjct: 110 -DVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVS-----WNAMVSGFACSGDMSTAEE 163

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAV 523
           + +N P + DA +W A+     + G M++G V
Sbjct: 164 WFRNAPEKEDAVLWTAM-----VSGYMDIGNV 190


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/736 (33%), Positives = 395/736 (53%), Gaps = 44/736 (5%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD----GKKIHCSVLKLGFEWDVFV 65
           R   A+  F + T  S L P+ YT+  VL AC +L+     G ++H + LK       FV
Sbjct: 143 RQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFV 202

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR-LEG 124
           A +L+ +Y +    + A KLF+ +P RD  SWN +IS   Q      A  +   M+  + 
Sbjct: 203 ANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDA 262

Query: 125 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG------ 178
             +D  T++ +L   A   +++ G  +H + VK GLE +L V N LI  Y+KFG      
Sbjct: 263 FRVDDFTLSILLTASA---SLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVE 319

Query: 179 -------------------------MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213
                                    ++  AL+VFD+M E++ VS+N+++A + ++     
Sbjct: 320 WLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFE 379

Query: 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273
           A   F  M + G++    +L S+      L D + S+ VHGF ++ G F  +  +  A++
Sbjct: 380 AMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFG-FGSNGYVEAALL 438

Query: 274 DMYAKLGIINSACAVFEGLPVKDVIS--WNTLITGYAQNGLASEAIEVFQMMEECNEINP 331
           DMY + G +  A  +F    +++  S  W  +I GYA+NG   EAI +F +     ++  
Sbjct: 439 DMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIM 498

Query: 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391
           ++    S+L     +G L  G +IH  VIK  L F++ V   +V MY KCG +DDAM +F
Sbjct: 499 DEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVF 558

Query: 392 YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL-- 449
             +P +  V WN +IS + +H QGD+AL  + +ML EG++P+ +TFV +++A   + L  
Sbjct: 559 GDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNL 618

Query: 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           V + +  F+ M+  + I+P  +HY   + + G  G L  A   I NMP +P A +W  LL
Sbjct: 619 VDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLL 678

Query: 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569
             CR+H N  +G  A+  +  ++ ++   ++L+SN+Y+  G+W+  + VR   R++G +K
Sbjct: 679 DGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRK 738

Query: 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
            P  S I    K++ FY  +R+HP+ + I   L  L  +   +GY PD SFVL +VEE  
Sbjct: 739 HPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHH 798

Query: 630 KEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSN 689
           K+  L  HS +LA  +GI+ + P  PI+I KN+ +CGDCH + K+ S +T+R+I +RDS+
Sbjct: 799 KKIFLFHHSAKLAATYGILMTKPGKPIRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSS 858

Query: 690 RFHHFKDGICSCGDYW 705
            FH F +G CSC D W
Sbjct: 859 GFHCFSNGQCSCKDCW 874



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 242/527 (45%), Gaps = 51/527 (9%)

Query: 47  GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQ 106
            K +H ++LK   E D  ++ +L+  Y +  L   A +LF  +P  +  S+  +IS +  
Sbjct: 83  AKTVHATLLKRD-EEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLIS-FLS 140

Query: 107 SGNAVEALDILDEMRLEG-VSMDPITVASILPVCARS-DNILSGLLIHLYIVKHGLEFNL 164
                 AL +   M     +  +  T  ++L  C+    +   GL +H   +K     + 
Sbjct: 141 KHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSP 200

Query: 165 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224
           FV+N L+++YAK      AL++F+Q+  RD+ SWN+II+A  Q +   TA   F  MQ  
Sbjct: 201 FVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQAT 260

Query: 225 -GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 283
              + D  TL  L +  A L +    + VH   ++ G    D+ +GN ++  Y+K G ++
Sbjct: 261 DAFRVDDFTLSILLTASASLME---GQQVHAHAVKLG-LETDLNVGNGLIGFYSKFGNVD 316

Query: 284 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN----------Q 333
               +FEG+ V+DVI+W  ++T Y + GL + A++VF  M E N ++ N          Q
Sbjct: 317 DVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQ 376

Query: 334 G--------------------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 373
           G                    +  S++ A   +G  +   ++H   +K     + +V   
Sbjct: 377 GFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAA 436

Query: 374 LVDMYGKCGRIDDAMSLF--YQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-V 430
           L+DMY +CGR+ DA  +F  +++   SSV W A+I  +  +GQ ++A+  F     +G V
Sbjct: 437 LLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKV 496

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
             D +   S+L  C   G +  G++  H    + G+  +L+    +V ++ + G +  A 
Sbjct: 497 IMDEVAAASMLGLCGTIGHLDMGKQ-IHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAM 555

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
               +MP   D   W  L+    +H          DR  E+  E +G
Sbjct: 556 KVFGDMPC-TDIVTWNTLISGNLMHRQ-------GDRALEIWVEMLG 594



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 181/378 (47%), Gaps = 38/378 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           +IS  ++      A   F     T   R D +T   +L A  +L++G+++H   +KLG E
Sbjct: 237 IISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGLE 296

Query: 61  WDVFVAASLLHMYCRFG-------------------------------LANVARKLFDDM 89
            D+ V   L+  Y +FG                               L N+A K+FD+M
Sbjct: 297 TDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEM 356

Query: 90  PVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 149
           P ++S S+N +++G+C++    EA+ +   M  EG+ +   ++ S++  C    +     
Sbjct: 357 PEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSK 416

Query: 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD--QMMERDVVSWNSIIAAYEQ 207
            +H + VK G   N +V   L++MY + G M  A ++F   ++ E   V W ++I  Y +
Sbjct: 417 QVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYAR 476

Query: 208 SNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266
           +  P  A   F   +  G +  D +   S+  +   +      + +H  +++ G    ++
Sbjct: 477 NGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGF-NL 535

Query: 267 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF-QMMEE 325
            +GNAVV MY K G ++ A  VF  +P  D+++WNTLI+G   +     A+E++ +M+ E
Sbjct: 536 EVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGE 595

Query: 326 CNEINPNQGTYVSILPAY 343
              I PNQ T+V I+ AY
Sbjct: 596 --GIKPNQVTFVLIISAY 611


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/688 (35%), Positives = 371/688 (53%), Gaps = 101/688 (14%)

Query: 18  FYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77
            Y+     G+RPD + +P ++K+      G   H  VLKLG   D FV  +++ MY    
Sbjct: 17  MYEQMQGCGVRPDAFVYPILIKSAGT--GGIGFHAHVLKLGHGSDAFVRNAVIDMY---- 70

Query: 78  LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 137
               ARK+ D         WNAM+SGY +  +  +A  + D                ++P
Sbjct: 71  ----ARKVAD---------WNAMVSGYWKWESEGQAQWLFD----------------VMP 101

Query: 138 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 197
                                  E N+     ++  YAK   +  A R FD M ER VVS
Sbjct: 102 -----------------------ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS 138

Query: 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257
           WN++++ Y Q+     A   F  M                     L   RNS        
Sbjct: 139 WNAMLSGYAQNGLAEEALRLFDEM---------------------LGAYRNS-------- 169

Query: 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317
                    +  NA++  Y ++G ++SA  +F  +P ++V++WN++I GYAQNG ++ AI
Sbjct: 170 ---------VTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 220

Query: 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377
           E+F+ M    ++ P++ T VS++ A  H+GAL  G  +   + +N +   +     ++ M
Sbjct: 221 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 280

Query: 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 437
           Y +CG ++DA  +F ++     V +N +IS    HG G +A+N    M + G+ PD +TF
Sbjct: 281 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 340

Query: 438 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497
           + +LTACSH+GL+ EG++ F  +++     P + HY CMVDL GR G L  A   ++ MP
Sbjct: 341 IGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMP 395

Query: 498 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557
           + P A ++G+LL A RIH  +ELG +A+++LFE++ +N G ++L+SNIYA+ G+W+ V+ 
Sbjct: 396 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 455

Query: 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 617
           +R   +  G+KKT GWS +E   K+  F   +R+H + + IY  L  L  KM+  GY+ D
Sbjct: 456 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 515

Query: 618 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 677
           KS VL+DVEE+EKE I+ +HSE+LAI + ++ S   + I++ KNLRVC DCH   K IS+
Sbjct: 516 KSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISK 575

Query: 678 ITEREIIVRDSNRFHHFKDGICSCGDYW 705
           +  R IIVRD+NRFH F DG+CSC DYW
Sbjct: 576 LEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFE 60
           MI+ Y + G+ + A++ F +      L PD  T   V+ AC +L    ++   V++   E
Sbjct: 206 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL-GALELGNWVVRFLTE 264

Query: 61  WDVFVAAS----LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 116
             + ++ S    ++ MY R G    A+++F +M  RD  S+N +ISG+   G+ VEA+++
Sbjct: 265 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 324

Query: 117 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176
           +  M+  G+  D +T   +L  C+ +  +  G  +   I    ++        ++++  +
Sbjct: 325 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYAC----MVDLLGR 380

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G +  A R  ++M ME     + S++ A
Sbjct: 381 VGELEDAKRTMERMPMEPHAGVYGSLLNA 409


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/663 (35%), Positives = 373/663 (56%), Gaps = 17/663 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFT--LTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVL 55
           MIS+Y   G  S+   CF  F+     GLRPD  T   ++  C +      G  IH   L
Sbjct: 217 MISMYSHQGICSK---CFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCL 273

Query: 56  KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115
           +   +  V V  +L++MY   G  + A  LF +M  RD  SWN MIS Y Q+ N+ +AL 
Sbjct: 274 RSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALK 333

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175
            L ++     S + +T +S L  C+    ++ G ++H  +++  L+ NL V N+LI MY 
Sbjct: 334 TLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYG 393

Query: 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 235
           K   M  A +VF  M   D+VS+N +I  Y    D   A   F+ M+ AGI+P+ +T+++
Sbjct: 394 KCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMIN 453

Query: 236 LTSIVAQLNDCRN-SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294
           +    A  ND  N  R +H +I+R G F+ D  + N+++ MYAK G + S+  +F  +  
Sbjct: 454 IHGSFASSNDLHNYGRPLHAYIIRTG-FLSDEYVANSLITMYAKCGNLESSTNIFNSITN 512

Query: 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354
           K+++SWN +I    Q G   EA+++F  M+       ++      L + + + +L +G++
Sbjct: 513 KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCASLASLEEGMQ 571

Query: 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGI 411
           +H   +K+ L  D +V    +DMYGKCG++D+ + +   VP  +  P   WN +IS +  
Sbjct: 572 LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQV---VPDQAIRPQQCWNTLISGYAK 628

Query: 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK 471
           +G   +A   F+QM+  G +PD++TFV+LL+ACSH+GLV +G  Y++ M   FG+ P +K
Sbjct: 629 YGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIK 688

Query: 472 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531
           H  C+VDL GR G    A  FI+ MPV P+  IW +LL + R H N+E+G   + +L E+
Sbjct: 689 HCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLEL 748

Query: 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRT 591
           D  +   YVL+SN+YA   +W  VD++RS  +   + K P  S +++ N+V  F  G+R 
Sbjct: 749 DPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRG 808

Query: 592 HPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSP 651
           H   EKIY +L  +  K++ +GY+ D S  L D +E++KE  L +HSE+LA+A+G+I  P
Sbjct: 809 HKHAEKIYAKLDEMLLKLREVGYIADTSSALHDTDEEQKEQNLWNHSEKLALAYGLIVVP 868

Query: 652 PKS 654
             S
Sbjct: 869 EGS 871



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 265/531 (49%), Gaps = 25/531 (4%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLTSGLRP-----DFYTFPPVLKACR------NLVDGKKI 50
           +S  VRCGR   A      F +  G+R        +    ++ AC        +  G  I
Sbjct: 13  VSGCVRCGRDGTA------FEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAI 66

Query: 51  HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA 110
           H    + G   +V++  +LLH+Y   G+ + A++LF +MP R+  SW A++     +G  
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYL 126

Query: 111 VEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170
            EAL    +MR +GV  +    A+++ +C   +N + GL +   ++  GL+  + V+N+L
Sbjct: 127 EEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSL 186

Query: 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 230
           I M+   G +  A ++FD+M E D +SWN++I+ Y            F+ M+  G++PD 
Sbjct: 187 ITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDA 246

Query: 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 290
            TL SL S+ A  +   +   +H   +R       V + NA+V+MY+  G ++ A  +F 
Sbjct: 247 TTLCSLMSVCASSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFW 305

Query: 291 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350
            +  +D+ISWNT+I+ Y QN  +++A++    +   NE +PN  T+ S L A S  GAL 
Sbjct: 306 NMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNE-SPNHLTFSSALGACSSPGALI 364

Query: 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            G  +HA V++  L  ++ V   L+ MYGKC  ++DA  +F  +P    V +N +I  + 
Sbjct: 365 DGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYA 424

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
           +   G KA+  F  M   G++P++IT +++  + + S  +    R  H      G     
Sbjct: 425 VLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDE 484

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
                ++ ++ + G+L  + N   ++  +   S W A++ A     N++LG
Sbjct: 485 YVANSLITMYAKCGNLESSTNIFNSITNKNIVS-WNAIIAA-----NVQLG 529



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 250/512 (48%), Gaps = 9/512 (1%)

Query: 9   GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFV 65
           G L EA+  + Q     G+  +   F  V+  C    N V G ++   V+  G +  V V
Sbjct: 124 GYLEEALRAYRQMR-RDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 182

Query: 66  AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125
           A SL+ M+   G  + A KLFD M   D+ SWNAMIS Y   G   +   +  +MR  G+
Sbjct: 183 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 185
             D  T+ S++ VCA SD+   G  IH   ++  L+ ++ V N L+NMY+  G +  A  
Sbjct: 243 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 186 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245
           +F  M  RD++SWN++I++Y Q+ +   A      +      P+ LT  S     +    
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 362

Query: 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT 305
             + + VH  +++      ++++GN+++ MY K   +  A  VF+ +P  D++S+N LI 
Sbjct: 363 LIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIG 421

Query: 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ-GIKIHARVIKNCL 364
           GYA     ++A++VF  M     I PN  T ++I  +++    L   G  +HA +I+   
Sbjct: 422 GYAVLEDGTKAMQVFSWMRSAG-IKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGF 480

Query: 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424
             D +VA  L+ MY KCG ++ + ++F  +   + V WNAII+ +   G G++AL  F  
Sbjct: 481 LSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFID 540

Query: 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484
           M   G + D +     L++C+    + EG +  H +  + G+          +D++G+ G
Sbjct: 541 MQHAGNKLDRVCLAECLSSCASLASLEEGMQ-LHGLGMKSGLDSDSYVVNAAMDMYGKCG 599

Query: 485 HLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
            +      + +  +RP    W  L+     +G
Sbjct: 600 KMDEMLQVVPDQAIRPQ-QCWNTLISGYAKYG 630



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 201/426 (47%), Gaps = 7/426 (1%)

Query: 89  MPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC---ARSDNI 145
           M  R   +W   +SG  + G    A ++L  MR  GV +    +AS++  C    R + I
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 205
             G  IH    + GL  N+++   L+++Y   G++  A R+F +M ER+VVSW +++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVAL 120

Query: 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 265
             +     A   +  M++ G+  +     ++ S+   L +      V   ++  G     
Sbjct: 121 SSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSG-LQNQ 179

Query: 266 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325
           V + N+++ M+  LG ++ A  +F+ +   D ISWN +I+ Y+  G+ S+   VF  M  
Sbjct: 180 VSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRH 239

Query: 326 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385
            + + P+  T  S++   +       G  IH+  +++ L   V V   LV+MY   G++ 
Sbjct: 240 -HGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 298

Query: 386 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445
           DA  LF+ + R   + WN +IS +  +     AL    Q+      P+H+TF S L ACS
Sbjct: 299 DAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACS 358

Query: 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW 505
             G + +G +  H +  +  ++ +L     ++ ++G+   +  A    Q+MP   D   +
Sbjct: 359 SPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DIVSY 416

Query: 506 GALLGA 511
             L+G 
Sbjct: 417 NVLIGG 422


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 322/544 (59%), Gaps = 3/544 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N   SN LIN Y + G + +A +VFD+M +R + +WN++IA   Q          F  M 
Sbjct: 24  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 83

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             G  PD  TL S+ S  A L      + +HG+ ++ G  + D+++ +++  MY + G +
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLEL-DLVVNSSLAHMYMRNGKL 142

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                V   +PV+++++WNTLI G AQNG     + +++MM+  +   PN+ T+V++L +
Sbjct: 143 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMK-ISGCRPNKITFVTVLSS 201

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S +    QG +IHA  IK      V V + L+ MY KCG + DA   F +      V W
Sbjct: 202 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 261

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +++IS +G HGQGD+A+  F  M ++  +  + + F++LL ACSHSGL  +G   F MM 
Sbjct: 262 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMV 321

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           E++G KP LKHY C+VDL GRAG L  A   I++MP++ D  IW  LL AC IH N E+ 
Sbjct: 322 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMA 381

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
                 + ++D  +   YVL++N++A+  +W  V EVR   RD+ +KK  G S  E   +
Sbjct: 382 QRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGE 441

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+R+  K ++IY  L+ LT +MK  GY PD + VL D++E+EKE  L  HSE+L
Sbjct: 442 VHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKL 501

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AF ++  P  +PI+I KNLRVC DCH   K+IS I  REI +RD +RFHHF +G CSC
Sbjct: 502 AVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSC 561

Query: 702 GDYW 705
           GDYW
Sbjct: 562 GDYW 565



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 23/370 (6%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++ Y R G    ARK+FD+MP R   +WNAMI+G  Q     E L +  EM   G S D
Sbjct: 31  LINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPD 90

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+    A   ++  G  IH Y +K+GLE +L V+++L +MY + G ++    V  
Sbjct: 91  EYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIR 150

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  R++V+WN++I    Q+  P T    +  M+ +G +P+ +T V++ S  + L     
Sbjct: 151 SMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ 210

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   ++ G     V + ++++ MY+K G +  A   F     +D + W+++I+ Y 
Sbjct: 211 GQQIHAEAIKIG-ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYG 269

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +G   EAIE+F  M E   +  N+  ++++L A SH G   +G+++          FD+
Sbjct: 270 FHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLEL----------FDM 319

Query: 369 FVA-----------TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
            V            TC+VD+ G+ G +D A ++   +P ++  V W  ++S   IH   +
Sbjct: 320 MVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAE 379

Query: 417 KALNFFRQML 426
            A   F+++L
Sbjct: 380 MAQRVFKEIL 389



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 9/330 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD YT   V       R++  G++IH   +K G E D+ V +SL HMY R G     
Sbjct: 86  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 145

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +   MPVR+  +WN +I G  Q+G     L +   M++ G   + IT  ++L  C+  
Sbjct: 146 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 205

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH   +K G    + V ++LI+MY+K G +  A + F +  + D V W+S+I
Sbjct: 206 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 265

Query: 203 AAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +AY        A   F TM +Q  ++ + +  ++L    +          +   ++ +  
Sbjct: 266 SAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYG 325

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
           F   +     VVD+  + G ++ A A+   +P+K D++ W TL++    +  A  A  VF
Sbjct: 326 FKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVF 385

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +   E  +I+PN      +L A  H  A R
Sbjct: 386 K---EILQIDPNDSA-CYVLLANVHASAKR 411


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 350/600 (58%), Gaps = 16/600 (2%)

Query: 22  TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDV-FVAASLLHMYC------ 74
           TL     P   +F   L+ C+++   K+IH S++K     D     ++ L   C      
Sbjct: 13  TLPHDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPI 72

Query: 75  --RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN-AVEALDILDEMRLEGVSMDPIT 131
             R+ L+ +A+    ++P+     +NA+I G   S N ++E L +  +M  +G+  D  T
Sbjct: 73  DPRYALSLLAQLRTPNLPL-----YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYT 127

Query: 132 VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191
           +  +L  CA S  +  G  +H   +K GL  +++VSN L+ MYA   ++R A +VFD   
Sbjct: 128 IPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSP 187

Query: 192 ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251
           +RD+VSW ++I  Y +        G F  M    +Q D +TLV + S  A+L D R  R 
Sbjct: 188 QRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRK 247

Query: 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311
           +H +I+R      DV +GNA+VDMY K G  N A  VF+ +PVK+V+SWN++I+G AQ G
Sbjct: 248 LHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKG 307

Query: 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA 371
              E++ +F+ M+    + P+  T V++L + +++G L  G  +HA + +N +  D F+ 
Sbjct: 308 QFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIG 366

Query: 372 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431
             LVDMY KCG ID A  +F  + R     + A+I    +HGQG KAL+ F +M   G+ 
Sbjct: 367 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 426

Query: 432 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491
           PD +TFV +LTACSH GLV EG++YF  M   + ++P L+HYGCMVDL GRAG +  A  
Sbjct: 427 PDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEE 486

Query: 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551
           FI+NMP+ PDA + GALLGAC+IHG +ELG     ++ +++    G YVLMSNIY++  +
Sbjct: 487 FIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANR 546

Query: 552 WEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611
           W    ++R   ++R L+KTPG SSIE++  +  F  G+++HPK ++IY  L  + + +K+
Sbjct: 547 WRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 606



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 223/403 (55%), Gaps = 10/403 (2%)

Query: 19  YQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 75
           Y+  L+ G+ PD YT P VLKAC   R + +G+++H   +K+G   DV+V+ +L+ MY  
Sbjct: 113 YKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAV 172

Query: 76  FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135
             +   ARK+FD  P RD  SW  MI GY + G A E + +  EM  E +  D +T+  +
Sbjct: 173 CDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIV 232

Query: 136 LPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           L  CAR  ++  G  +H YI+++  +  ++FV N L++MY K G    A +VF +M  ++
Sbjct: 233 LSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 292

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           VVSWNS+I+   Q      +   F  MQ+ G++PD +TLV++ +  A L      + VH 
Sbjct: 293 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHA 352

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
           + + R     D  IGNA+VDMYAK G I+ AC VF+ +  KDV S+  +I G A +G   
Sbjct: 353 Y-LDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGG 411

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA--RVIKNCLCFDVFVAT 372
           +A+++F  M +   I P++ T+V +L A SHVG + +G K       I N L   +    
Sbjct: 412 KALDLFSEMPKMG-IEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYN-LRPQLEHYG 469

Query: 373 CLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQ 414
           C+VD+ G+ G I++A      +P    +    A++    IHG+
Sbjct: 470 CMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGK 512


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/627 (35%), Positives = 359/627 (57%), Gaps = 7/627 (1%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           M+S+Y + G   EA+  F      SG  P+ +    V++AC  L     G ++H  V++ 
Sbjct: 121 MVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRS 180

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ DV+V  SL+  Y + G    AR +FD +  + + +W  +I+GY + G +  +L++ 
Sbjct: 181 GFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELF 240

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +MR   V  D   V+S+L  C+  + +  G  IH Y+++ G E ++ V N LI+ Y K 
Sbjct: 241 AQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC 300

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             ++   ++FDQM+ ++++SW ++I+ Y Q++    A   F  M + G +PD     S+ 
Sbjct: 301 NRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVL 360

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +           R VH + ++      D  + N ++DMYAK  ++  A  VF+ +  ++V
Sbjct: 361 TSCGSREALEQGRQVHAYTIKAN-LESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 419

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           IS+N +I GY+     SEA+E+F  M       PN+ T+ +++ A S++ +LR G + H 
Sbjct: 420 ISYNAMIEGYSSQEKLSEALELFHEMR-VRLQKPNEFTFAALITAASNLASLRHGQQFHN 478

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L F  FV   LVDMY KCG I++A  +F        V WN++IS H  HG+ ++
Sbjct: 479 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 538

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           AL  FR+M+ EG++P+++TFV++L+ACSH+G V +G  +F+ M   FGIKP  +HY C+V
Sbjct: 539 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVV 597

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
            L GR+G L  A  FI+ MP+ P A +W +LL ACRI GN+ELG  A++     D ++ G
Sbjct: 598 SLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 657

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            Y+L+SNI+A+ G W  V +VR       + K PG S IEVNNKV++F   + TH + + 
Sbjct: 658 SYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD- 716

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQD 624
           I   L  L   +K  GYVPD + +L +
Sbjct: 717 IGSVLDILIQHIKGAGYVPDATALLMN 743



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 255/499 (51%), Gaps = 12/499 (2%)

Query: 27  LRPDFYTFPPVLK--ACRN-LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83
           LRP    F  +L+    RN ++  K IH  ++  G + D F+A  L+++  +    + AR
Sbjct: 45  LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNAR 104

Query: 84  KLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI-LDEMRLEGVSMDPITVASILPVCARS 142
            +FD MP ++  +W++M+S Y Q G + EAL + +D  R  G   +   +AS++  C + 
Sbjct: 105 VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 164

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
             +  G  +H ++V+ G + +++V  +LI+ Y+K G +  A  VFDQ+ E+  V+W +II
Sbjct: 165 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTII 224

Query: 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF 262
           A Y +      +   F  M++  + PD   + S+ S  + L      + +H +++RRG  
Sbjct: 225 AGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTE 284

Query: 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQM 322
           M DV + N ++D Y K   + +   +F+ + VK++ISW T+I+GY QN    EA+++F  
Sbjct: 285 M-DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 343

Query: 323 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382
           M       P+     S+L +     AL QG ++HA  IK  L  D FV   L+DMY K  
Sbjct: 344 MNRLG-WKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSN 402

Query: 383 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442
            + DA  +F  +   + + +NA+I  +    +  +AL  F +M     +P+  TF +L+T
Sbjct: 403 LLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALIT 462

Query: 443 ACSHSGLVSEGQRYFHMMQEEFGIK--PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500
           A S+   +  GQ+ FH    + G+   P + +   +VD++ + G +  A     N  +  
Sbjct: 463 AASNLASLRHGQQ-FHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMF-NSSIWR 518

Query: 501 DASIWGALLGACRIHGNME 519
           D   W +++     HG  E
Sbjct: 519 DVVCWNSMISTHAQHGEAE 537



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 142/279 (50%), Gaps = 2/279 (0%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           +Q   ++P      +L  +    N   + + +HG I+  G    D  + N ++++ +K  
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSG-LQSDTFLANILINVCSKSD 98

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            +++A  VF+ +P K++I+W+++++ Y+Q G + EA+ VF  ++  +  +PN+    S++
Sbjct: 99  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 158

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
            A + +G + +G ++H  V+++    DV+V T L+D Y K G I++A  +F Q+   ++V
Sbjct: 159 RACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV 218

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            W  II+ +   G+   +L  F QM +  V PD     S+L+ACS    + EG +  H  
Sbjct: 219 TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL-EGGKQIHAY 277

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
               G +  +     ++D + +   +         M V+
Sbjct: 278 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK 316


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 338/559 (60%), Gaps = 35/559 (6%)

Query: 180 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG--IQPDLLTLVSLT 237
           + +A ++ D+  +  + + NS+I A+ +S  P  +  F+  +  +G  ++PD  T+  L 
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS------------- 284
                L        VHG  +RRG F  D  +   ++ +YA+LG ++S             
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRG-FDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDF 174

Query: 285 --------ACA----------VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326
                   ACA          +FEG+P +D I+WN +I+GYAQ G + EA+ VF +M+  
Sbjct: 175 VCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ-L 233

Query: 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386
             +  N    +S+L A + +GAL QG   H+ + +N +   V +AT LVD+Y KCG ++ 
Sbjct: 234 EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293

Query: 387 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446
           AM +F+ +   +   W++ ++   ++G G+K L  F  M  +GV P+ +TFVS+L  CS 
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 506
            G V EGQR+F  M+ EFGI+P L+HYGC+VDL+ RAG L  A + IQ MP++P A++W 
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413

Query: 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566
           +LL A R++ N+ELG +AS ++ E+++ N G YVL+SNIYA+   W+ V  VR   + +G
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473

Query: 567 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 626
           ++K PG S +EVN +V  F+ G+++HPKY +I    ++++ +++  GY  D + V+ D++
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533

Query: 627 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 686
           E+EKE  L  HSE+ AIAFGI+S     PI+I KNLRVCGDCH  +  IS+I  REIIVR
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593

Query: 687 DSNRFHHFKDGICSCGDYW 705
           D NRFHHFKDG CSC  +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 184/390 (47%), Gaps = 65/390 (16%)

Query: 18  FYQFTLTSG--LRPDFYTFPPVLKACRNL---VDGKKIHCSVLKLGFEWDVFVAASLLHM 72
           FY+  L+SG  L+PD YT   +++AC  L     G ++H   ++ GF+ D  V   L+ +
Sbjct: 93  FYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISL 152

Query: 73  Y----------------------CRFGLANV---------ARKLFDDMPVRDSGSWNAMI 101
           Y                      CR  +            ARKLF+ MP RD  +WNAMI
Sbjct: 153 YAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMI 212

Query: 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE 161
           SGY Q G + EAL++   M+LEGV ++ + + S+L  C +   +  G   H YI ++ ++
Sbjct: 213 SGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK 272

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
             + ++  L+++YAK G M  A+ VF  M E++V +W+S +     +         F+ M
Sbjct: 273 ITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLM 332

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI---------MRRGWFMEDVIIG-NA 271
           +Q G+ P+ +T VS+      L  C    SV GF+         MR  + +E  +     
Sbjct: 333 KQDGVTPNAVTFVSV------LRGC----SVVGFVDEGQRHFDSMRNEFGIEPQLEHYGC 382

Query: 272 VVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330
           +VD+YA+ G +  A ++ + +P+K     W++L+  +A     +  + V    +      
Sbjct: 383 LVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL--HASRMYKNLELGVLASKKMLELET 440

Query: 331 PNQGTYVSILPAYS------HVGALRQGIK 354
            N G YV +   Y+      +V  +RQ +K
Sbjct: 441 ANHGAYVLLSNIYADSNDWDNVSHVRQSMK 470



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 176/366 (48%), Gaps = 39/366 (10%)

Query: 98  NAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYI 155
           N+MI  +C+S    ++ D    +   G  + P   TV  ++  C       +GL +H   
Sbjct: 75  NSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMT 134

Query: 156 VKHGLEFNLFVSNNLINMYAKFGMMRH-------------------------------AL 184
           ++ G + +  V   LI++YA+ G +                                 A 
Sbjct: 135 IRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFAR 194

Query: 185 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244
           ++F+ M ERD ++WN++I+ Y Q  +   A   F  MQ  G++ + + ++S+ S   QL 
Sbjct: 195 KLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLG 254

Query: 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                R  H +I  R      V +   +VD+YAK G +  A  VF G+  K+V +W++ +
Sbjct: 255 ALDQGRWAHSYI-ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364
            G A NG   + +E+F +M++ + + PN  T+VS+L   S VG + +G + H   ++N  
Sbjct: 314 NGLAMNGFGEKCLELFSLMKQ-DGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRNEF 371

Query: 365 CFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNF 421
             +  +    CLVD+Y + GR++DA+S+  Q+P +  +  W++++    ++   +  +  
Sbjct: 372 GIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431

Query: 422 FRQMLD 427
            ++ML+
Sbjct: 432 SKKMLE 437



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 8/210 (3%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGKKIHCSVLKL 57
           MIS Y + G   EA++ F+   L  G++ +      VL AC  L     G+  H  + + 
Sbjct: 211 MISGYAQVGESREALNVFHLMQL-EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERN 269

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
             +  V +A +L+ +Y + G    A ++F  M  ++  +W++ ++G   +G   + L++ 
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKH--GLEFNLFVSNNLINMYA 175
             M+ +GV+ + +T  S+L  C+    +  G   H   +++  G+E  L     L+++YA
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRNEFGIEPQLEHYGCLVDLYA 388

Query: 176 KFGMMRHALRVFDQM-MERDVVSWNSIIAA 204
           + G +  A+ +  QM M+     W+S++ A
Sbjct: 389 RAGRLEDAVSIIQQMPMKPHAAVWSSLLHA 418


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/631 (34%), Positives = 365/631 (57%), Gaps = 19/631 (3%)

Query: 85  LFDDMPVRDSGSWNAMISGYC----------QSGNAVEALDILDEMRLEGVSMDPITVAS 134
           + DD  +R + S     SG C          +   A+E  +IL E+  +G  +   T  +
Sbjct: 69  VLDDTQIRKTSS-----SGLCIQIEKLVLCNRYREAMELFEIL-ELEHDGFDVGGSTYDA 122

Query: 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194
           ++  C    +I     +  Y+V  G E +L+V N ++ ++ K G+M  A ++FD+M E+D
Sbjct: 123 LVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKD 182

Query: 195 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254
           + SW ++I  +  S +   A G F  M +        T  ++    A L   +  R +H 
Sbjct: 183 MASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHS 242

Query: 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 314
             ++RG   +D  +  A++DMY+K G I  A  VF+ +P K  + WN++I  YA +G + 
Sbjct: 243 CALKRG-VGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSE 301

Query: 315 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374
           EA+  +  M +      +  T   ++   + + +L    + HA +++     D+   T L
Sbjct: 302 EALSFYYEMRDSG-AKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTAL 360

Query: 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434
           VD Y K GR++DA  +F ++ R + + WNA+I+ +G HGQG++A+  F QML EG+ P+H
Sbjct: 361 VDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNH 420

Query: 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 494
           +TF+++L+ACS+SGL   G   F+ M  +  +KP   HY CMV+L GR G L  A+  I+
Sbjct: 421 VTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIR 480

Query: 495 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554
           + P +P  ++W  LL ACR+H N+ELG +A++ L+ ++ E +  Y+++ N+Y + GK + 
Sbjct: 481 SAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKE 540

Query: 555 VDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614
              V    + +GL+  P  + IEV  +   F  G+++H + ++IY+++ N+  ++   GY
Sbjct: 541 AAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGY 600

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
           V +   +L DV+E+E + IL  HSE+LAIAFG+I++P  +P+QI +  RVCGDCH+  KF
Sbjct: 601 VEENKALLPDVDEEE-QRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKF 659

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I+ +T REI+VRD++RFHHF+DG CSCGDYW
Sbjct: 660 IAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 231/463 (49%), Gaps = 19/463 (4%)

Query: 2   ISVYVRCGRLSEAVDCFYQFTLT-SGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKL 57
           I   V C R  EA++ F    L   G      T+  ++ AC   R++   K++   ++  
Sbjct: 87  IEKLVLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNS 146

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE D++V   +L ++ + GL   ARKLFD+MP +D  SW  MI G+  SGN  EA  + 
Sbjct: 147 GFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLF 206

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             M  E       T  +++   A    +  G  IH   +K G+  + FVS  LI+MY+K 
Sbjct: 207 LCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKC 266

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  VFDQM E+  V WNSIIA+Y        A  F+  M+ +G + D  T+  + 
Sbjct: 267 GSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVI 326

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
            I A+L     ++  H  ++RRG +  D++   A+VD Y+K G +  A  VF  +  K+V
Sbjct: 327 RICARLASLEYAKQAHAALVRRG-YDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNV 385

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           ISWN LI GY  +G   EA+E+F+ M     I PN  T++++L A S+ G   +G +I  
Sbjct: 386 ISWNALIAGYGNHGQGEEAVEMFEQMLREGMI-PNHVTFLAVLSACSYSGLSERGWEIFY 444

Query: 358 RVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQG 415
            + ++  +        C+V++ G+ G +D+A  L    P + ++  W  +++   +H   
Sbjct: 445 SMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENL 504

Query: 416 D----KALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEG 453
           +     A N +      G+ P+ +  ++ LL   + SG + E 
Sbjct: 505 ELGKLAAENLY------GMEPEKLCNYIVLLNLYNSSGKLKEA 541



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 164/364 (45%), Gaps = 17/364 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQF--TLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLG 58
           MI  +V  G  SEA   F         G    F T          +  G++IH   LK G
Sbjct: 189 MIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRG 248

Query: 59  FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
              D FV+ +L+ MY + G    A  +FD MP + +  WN++I+ Y   G + EAL    
Sbjct: 249 VGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYY 308

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
           EMR  G  +D  T++ ++ +CAR  ++      H  +V+ G + ++  +  L++ Y+K+G
Sbjct: 309 EMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWG 368

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            M  A  VF++M  ++V+SWN++IA Y        A   F  M + G+ P+ +T +++ S
Sbjct: 369 RMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLS 428

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             +          +   + R        +    +V++  + G+++ A  +    P K   
Sbjct: 429 ACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTT 488

Query: 299 S-WNTLITGYAQN------GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351
           + W TL+T    +       LA+E +   +  + CN        Y+ +L  Y+  G L++
Sbjct: 489 NMWATLLTACRMHENLELGKLAAENLYGMEPEKLCN--------YIVLLNLYNSSGKLKE 540

Query: 352 GIKI 355
              +
Sbjct: 541 AAGV 544


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/690 (34%), Positives = 373/690 (54%), Gaps = 14/690 (2%)

Query: 28  RPDFYTFP-----PVLKACRN---LVDGKKIHCSVL---KLGFEWDVFVAASLLHMYCRF 76
           +P    FP      +LK C N   L  G+ IH  ++   +     DV+   SL+++Y + 
Sbjct: 23  KPKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKC 82

Query: 77  GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136
           G    ARK+FD MP R+  SW AM+ GY  SG   E L +   M     S     VA+++
Sbjct: 83  GETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVV 142

Query: 137 -PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 195
              C+ S  I  G   H   +K GL  + FV N L+ MY+       A+RV D +   D+
Sbjct: 143 FKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDL 202

Query: 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255
             ++S ++ Y +             M +  +  D +T +S   + + L D   +R +H  
Sbjct: 203 SVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSR 262

Query: 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
           ++R G F  +V    A+++MY K G +  A  VF+    ++++   T++  Y Q+    E
Sbjct: 263 MVRLG-FNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEE 321

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+ +F  M+   E+ PN+ T+   L + + +  L+ G  +H  V+K+     V V   LV
Sbjct: 322 ALNLFSKMD-TKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALV 380

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
           +MY K G I+DA   F  +     V WN +I     HG G + L  F +M+  G  P+ I
Sbjct: 381 NMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRI 440

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           TF+ +L ACSH G V +G  YF+ + ++F ++P L+HY C+V L  +AG    A +F++ 
Sbjct: 441 TFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRT 500

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
            P+  D   W ALL AC +  N  LG   ++        + G YVL+SNI+A   +WEGV
Sbjct: 501 APIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGV 560

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615
            EVRSL   RG+KK PG S I + N+  +F      HP+   IY +++ + +K++ LGY 
Sbjct: 561 AEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLSKIRPLGYS 620

Query: 616 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 675
           PD + V  DV+E+++E  L+ HSE+LA+A+G++ +P  SP+ + KN+R+C DCH+  K I
Sbjct: 621 PDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYVTKNVRICDDCHSAIKLI 680

Query: 676 SQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           S+I++R I++RDSNRFHHF+DG CSC DYW
Sbjct: 681 SKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 358/632 (56%), Gaps = 6/632 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           +I+ YV+  R  E +  F    L  G+     T+  V ++C  L     G ++H   LK 
Sbjct: 210 VIAGYVQNDRFIEGLKLFKDM-LKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKS 268

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F +D  +  + L MY +      A K+F+ +P     S+NA+I GY +    ++ALDI 
Sbjct: 269 DFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIF 328

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
             ++   +  D I+++  L  C+     L G+ +H   VK GL FN+ V+N +++MY K 
Sbjct: 329 QSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKC 388

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G +  A  +F++M  RD VSWN+IIAA+EQ+ + +     F +M ++ ++PD  T  S+ 
Sbjct: 389 GALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVV 448

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A          +HG I++ G  + D  +G+A+VDMY K G++  A  +   L  K  
Sbjct: 449 KACAGQQALNYGTEIHGRIIKSGMGL-DWFVGSALVDMYGKCGMLMEAEKIHARLEEKTT 507

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN++I+G++    +  A   F  M E   I P+  TY ++L   +++  +  G +IHA
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQMLEMG-IIPDNYTYATVLDVCANMATIELGKQIHA 566

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           +++K  L  DV++A+ LVDMY KCG + D+  +F + P+   V W+A+I  +  HG G+K
Sbjct: 567 QILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEK 626

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A+N F +M    V+P+H  F+S+L AC+H G V +G  YF  M   +G+ P ++HY CMV
Sbjct: 627 AINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMV 686

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DL GR+G +  A   I++MP   D  IW  LL  C++ GN+E+   A + L ++D ++  
Sbjct: 687 DLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSS 746

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
            YVL++N+YA VG W  V ++RS+ ++  LKK PG S IEV ++V  F  G++ HP+ E+
Sbjct: 747 AYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEE 806

Query: 598 IYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE 629
           IY++   L  +MK  GYVPD  F+L +  E++
Sbjct: 807 IYEQTHLLVDEMKWAGYVPDIDFMLDEEMEEQ 838



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 276/539 (51%), Gaps = 11/539 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKL 57
           ++S Y+  G   ++++ F +   +  +  D+ TF  +LKAC  + D   G ++HC  +++
Sbjct: 109 LLSCYLHNGVNRKSIEIFVRMR-SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQM 167

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GFE DV   ++L+ MY +    + A ++F +MP R+   W+A+I+GY Q+   +E L + 
Sbjct: 168 GFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLF 227

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M   G+ +   T AS+   CA       G  +H + +K    ++  +    ++MYAK 
Sbjct: 228 KDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC 287

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
             M  A +VF+ +      S+N+II  Y + +  + A   F ++Q+  +  D ++L    
Sbjct: 288 ERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGAL 347

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
           +  + +        +HG  ++ G    ++ + N ++DMY K G +  AC +FE +  +D 
Sbjct: 348 TACSVIKRHLEGIQLHGLAVKCGLGF-NICVANTILDMYGKCGALMEACLIFEEMERRDA 406

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           +SWN +I  + QN    + + +F  M   + + P+  TY S++ A +   AL  G +IH 
Sbjct: 407 VSWNAIIAAHEQNEEIVKTLSLFVSMLR-STMEPDDFTYGSVVKACAGQQALNYGTEIHG 465

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
           R+IK+ +  D FV + LVDMYGKCG + +A  +  ++   ++V WN+IIS      Q + 
Sbjct: 466 RIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSEN 525

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           A  +F QML+ G+ PD+ T+ ++L  C++   +  G++  H    +  +   +     +V
Sbjct: 526 AQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQ-IHAQILKLQLHSDVYIASTLV 584

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536
           D++ + G++  +    +  P R D   W A++ A   HG   LG  A +   E+   NV
Sbjct: 585 DMYSKCGNMQDSRLMFEKAPKR-DYVTWSAMICAYAYHG---LGEKAINLFEEMQLLNV 639



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 150/512 (29%), Positives = 255/512 (49%), Gaps = 40/512 (7%)

Query: 33  TFPPVLKACRNLV---DGKKIHCSVLKLGFEWDVFVAASLLHMYCR-------------- 75
           TF  +L+ C NL     GK++H  ++  GF   ++VA  LL  YC+              
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 76  ------------FGLANV-----ARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 118
                       FG A +     A+ LFD MP RD  SWN+++S Y  +G   ++++I  
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 119 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 178
            MR   +  D  T A IL  C+  ++   GL +H   ++ G E ++   + L++MY+K  
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 179 MMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTS 238
            +  A RVF +M ER++V W+++IA Y Q++  I     F  M + G+     T  S+  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 298
             A L+  +    +HG  ++   F  D IIG A +DMYAK   +  A  VF  LP     
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSD-FAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 358
           S+N +I GYA+     +A+++FQ ++  N +  ++ +    L A S +    +GI++H  
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQR-NNLGFDEISLSGALTACSVIKRHLEGIQLHGL 365

Query: 359 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKA 418
            +K  L F++ VA  ++DMYGKCG + +A  +F ++ R  +V WNAII+ H  + +  K 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMV 477
           L+ F  ML   + PD  T+ S++ AC+    ++ G   +  +++   G+   +     +V
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG--SALV 483

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509
           D++G+ G L  A      +  +   S W +++
Sbjct: 484 DMYGKCGMLMEAEKIHARLEEKTTVS-WNSII 514



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 197/419 (47%), Gaps = 38/419 (9%)

Query: 127 MDP---ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA 183
           M+P   +T + IL  C+    +  G  +H  ++  G    ++V+N L+  Y K   M +A
Sbjct: 1   MNPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYA 60

Query: 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT----------------------- 220
            +VFD+M +RDV+SWN++I  Y    +   A   F +                       
Sbjct: 61  FKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNR 120

Query: 221 --------MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272
                   M+   I  D  T   +    + + D      VH   ++ G F  DV+ G+A+
Sbjct: 121 KSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMG-FENDVVTGSAL 179

Query: 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 332
           VDMY+K   ++ A  VF  +P ++++ W+ +I GY QN    E +++F+ M +   +  +
Sbjct: 180 VDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVG-MGVS 238

Query: 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392
           Q TY S+  + + + A + G ++H   +K+   +D  + T  +DMY KC R+ DA  +F 
Sbjct: 239 QSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFN 298

Query: 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452
            +P      +NAII  +    QG KAL+ F+ +    +  D I+    LTACS      E
Sbjct: 299 TLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLE 358

Query: 453 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511
           G +  H +  + G+  ++     ++D++G+ G L  A    + M  R DA  W A++ A
Sbjct: 359 GIQ-LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAA 415


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/557 (40%), Positives = 331/557 (59%), Gaps = 47/557 (8%)

Query: 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 210
           +H    K G       +N  I  Y   G +  A RVFD M  RD VS+NS+I  Y  S D
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 270
             +A   F  +    + P   T V+ TS+VA                             
Sbjct: 93  VGSAQRLFERV----LAP---TPVTWTSMVAG---------------------------- 117

Query: 271 AVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ-MMEECNEI 329
                + + G + SA  VFE +P +D++SWN +I+G   N L  EA+ +F+ MMEE    
Sbjct: 118 -----FCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE--GF 170

Query: 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389
            PN+GT VS+L A +  GAL  G  +H  V K  L +D F+ T LVDMY KCG ++ A+ 
Sbjct: 171 VPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALE 230

Query: 390 LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM-LDEGVRPDHITFVSLLTACSHSG 448
           +F  +   ++  WNA+I+   ++G   KAL+ FRQM L+  V PD +TFV +L ACSH+G
Sbjct: 231 VFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAG 290

Query: 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508
            V  G+ +F+ + +++G++  L+HY CMVDL  R+GHL  AH  I  MP++PD  +W AL
Sbjct: 291 FVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRAL 350

Query: 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568
           LG CR+H N+++   A + + E+++   G +VL+SN+YA VG+W GV++VR   R +G++
Sbjct: 351 LGGCRLHKNVKM---AENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIE 407

Query: 569 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 628
           K PG SS+E++  +  F +G+++HP Y+ I+ +L  +  +M+  GYV + + V  D+E++
Sbjct: 408 KIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDE 467

Query: 629 EKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 688
           EKE  L  HSE+LAIAFG+I  PP++ I+I KNLR C DCH++ K +S+I  REI+VRD 
Sbjct: 468 EKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDR 527

Query: 689 NRFHHFKDGICSCGDYW 705
            RFHHF+ G CSC D+W
Sbjct: 528 ARFHHFRGGACSCNDFW 544



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 45/397 (11%)

Query: 50  IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGN 109
           +H    KLGF        + +  YC  G    AR++FD MP RD+ S+N+MI GY  SG+
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169
              A  + + +    ++  P+T  S++    R+ ++ S                      
Sbjct: 93  VGSAQRLFERV----LAPTPVTWTSMVAGFCRAGDVES---------------------- 126

Query: 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 229
                        A RVF++M ERD+VSWN++I+    +  P+ A   F  M + G  P+
Sbjct: 127 -------------ARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPN 173

Query: 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289
             T+VS+ S           + VH F+ ++     D  +G A+VDMYAK G +  A  VF
Sbjct: 174 RGTVVSVLSACTGAGALETGKWVHVFVEKKR-LRWDEFLGTALVDMYAKCGAVELALEVF 232

Query: 290 EGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349
            GL  ++  +WN +I G A NG +++A+++F+ ME    + P++ T+V +L A SH G +
Sbjct: 233 TGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFV 292

Query: 350 RQGIKIHARVIKNCLCFDVFVA--TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAII 406
             G K H   I      ++ +    C+VD+  + G + +A  L  ++P +   V W A++
Sbjct: 293 DAG-KEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALL 351

Query: 407 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443
               +H     A N   +M +     DH+   +L  A
Sbjct: 352 GGCRLHKNVKMAENVISEM-EATCSGDHVLLSNLYAA 387



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 20/325 (6%)

Query: 10  RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKLGFEWDVFVA 66
           RL     C +++ +  G  P+  T   VL AC     L  GK +H  V K    WD F+ 
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG 212

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-V 125
            +L+ MY + G   +A ++F  +  R++ +WNAMI+G   +G + +ALD+  +M L G V
Sbjct: 213 TALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTV 272

Query: 126 SMDPITVASILPVCARSDNILSGLLIHLYIV--KHGLEFNLFVSNNLINMYAKFGMMRHA 183
           + D +T   +L  C+ +  + +G   H Y +  K+G+E  L     ++++ A+ G ++ A
Sbjct: 273 APDEVTFVGVLLACSHAGFVDAGKE-HFYTIPQKYGVELILEHYACMVDLLARSGHLQEA 331

Query: 184 LRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242
            ++  +M M+ DVV W +++       +   A    + M +A    D + L +L + V +
Sbjct: 332 HKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEM-EATCSGDHVLLSNLYAAVGR 390

Query: 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302
            N   + R      MR      + I G + V+M    G I+   +  +  P  D I    
Sbjct: 391 WNGVEDVRRT----MRSKGI--EKIPGCSSVEMD---GSIHEFISGDKSHPSYDDIHAKL 441

Query: 303 LITG--YAQNGLASEAIEVFQMMEE 325
           +  G    Q+G  +E  EVF  +E+
Sbjct: 442 IEIGGRMQQHGYVTETAEVFYDIED 466



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN--LVDGKKIHCSVL--K 56
           MI+     G  ++A+D F Q  L   + PD  TF  VL AC +   VD  K H   +  K
Sbjct: 246 MINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQK 305

Query: 57  LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALD 115
            G E  +   A ++ +  R G    A KL  +MP++ D   W A++ G     N   A +
Sbjct: 306 YGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAEN 365

Query: 116 ILDEMRLEGVSMDPITVASILPVCARSDNI 145
           ++ EM     S D + ++++     R + +
Sbjct: 366 VISEMEAT-CSGDHVLLSNLYAAVGRWNGV 394


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/671 (35%), Positives = 366/671 (54%), Gaps = 35/671 (5%)

Query: 37  VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYC--RFGLANVARKLFDDMPVRDS 94
           +L+ C+++   K+IH   +K+G   D      ++   C    G  N A ++FD +P    
Sbjct: 13  LLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSM 72

Query: 95  GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 154
             WN MI GY +  +    + +   M    +  D  T    L    R   +  G  +  +
Sbjct: 73  FIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNH 132

Query: 155 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITA 214
            VKHG + NLFV    I+M++  G++  A +VFD     +VV+WN +++ Y +       
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNR------- 185

Query: 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274
                 ++Q  I   LL L    S  ++L D    + +  +I            G  V  
Sbjct: 186 ------VKQFKISKMLLVL----SACSKLKDLEWGKHIFKYIN-----------GGIVEH 224

Query: 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334
           M+A  G ++ A  VF+ +  +DV+SW  +I GY +      A+ +F+ M+  N + P++ 
Sbjct: 225 MFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSN-VKPDEF 283

Query: 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394
           T VSIL A + +GAL  G  +   + KN    D FV   LVDMY KCG +  A  +F ++
Sbjct: 284 TMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM 343

Query: 395 PRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454
            +     W  +I    I+G G++AL  F  M++  V PD IT++ +L AC    +V +G+
Sbjct: 344 YQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGK 399

Query: 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI 514
            +F  M  + GIKP + HYGCMVDL G  G L  A   I NMPV+P++ +WG+ LGACR+
Sbjct: 400 SFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRV 459

Query: 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574
           H N++L  +A+ ++ E++ EN   YVL+ NIYA   KWE + +VR L  +RG+KKTPG S
Sbjct: 460 HKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCS 519

Query: 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634
            +E+N  V  F  G+++HP+ ++IY +L N+   +   GY PD S V  D+ E++KE  L
Sbjct: 520 LMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETAL 579

Query: 635 TSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHF 694
             HSE+LAIA+ +ISS P   I+I KNLR+C DCH+  K +SQ   RE+IV+D  RFHHF
Sbjct: 580 YRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHF 639

Query: 695 KDGICSCGDYW 705
           + G CSC ++W
Sbjct: 640 RHGSCSCNNFW 650



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 203/439 (46%), Gaps = 53/439 (12%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN---LVDGKKIHCSVLKL 57
           MI  Y +       V   Y   LTS ++PD +TFP  LK       L  GK++    +K 
Sbjct: 78  MIKGYSKISHPENGVS-MYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKH 136

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           GF+ ++FV  + +HM+   G+ ++A K+FD     +  +WN M+SGY    N V+   I 
Sbjct: 137 GFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY----NRVKQFKI- 191

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
            +M L            +L  C++  ++  G  I  YI    +E          +M+A  
Sbjct: 192 SKMLL------------VLSACSKLKDLEWGKHIFKYINGGIVE----------HMFAAC 229

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
           G M  A  VFD M  RDVVSW ++I  Y + N  I A   F  MQ + ++PD  T+VS+ 
Sbjct: 230 GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSIL 289

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L        V   I +      D  +GNA+VDMY K G +  A  VF+ +  KD 
Sbjct: 290 IACALLGALELGEWVKTCIDKNS-NKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDK 348

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA--------YSHVGAL 349
            +W T+I G A NG   EA+ +F  M E + + P++ TY+ +L A        +     +
Sbjct: 349 FTWTTMIVGLAINGHGEEALAMFSNMIEAS-VTPDEITYIGVLCACMVDKGKSFFTNMTM 407

Query: 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISC 408
           + GIK             V    C+VD+ G  G +++A+ +   +P + +S+ W + +  
Sbjct: 408 QHGIKP-----------TVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGA 456

Query: 409 HGIHGQGDKALNFFRQMLD 427
             +H     A    +Q+L+
Sbjct: 457 CRVHKNVQLADMAAKQILE 475


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 312/543 (57%), Gaps = 59/543 (10%)

Query: 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256
            WN +I +Y + N P  A   +  +++   + D     S+     Q++  +  + +HGF+
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 185

Query: 257 MRRGWFMEDVIIGNAV-----------------------------------VDMYAKLGI 281
           +++G    DV +GNA+                                   +DMYAK G 
Sbjct: 186 LKKG-LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGH 244

Query: 282 INSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 341
           +  A  +F GL  K V+SW  +I G  ++    E  ++F  M+E N I PN+ T ++   
Sbjct: 245 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEEN-IFPNEITMLN--- 300

Query: 342 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP 401
                              K  +  D  + T LVDMY KCG I+ A  LF +        
Sbjct: 301 -------------------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 341

Query: 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           WNAII+   +HG G++AL+ F +M  +GV+P+ ITF+ LL ACSH+GLV+EG++ F  M 
Sbjct: 342 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 401

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
             FG+ P ++HYGCMVDL GRAG L  AH  I++MP++P+  +WGAL+ ACR+H N +LG
Sbjct: 402 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 461

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
            +A+ +L E++ EN GY VLMSNIYA   +W     VR   +  G+KK PG S IEVN  
Sbjct: 462 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 521

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+++HP+  +I + L  +  K+   GYVPD S VL +++E+EKE  LT HSE+L
Sbjct: 522 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 581

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AFG+IS+ P +PI+I KNLRVC DCH  TK +S+I  R IIVRD NRFHHF++G CSC
Sbjct: 582 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 641

Query: 702 GDY 704
           GDY
Sbjct: 642 GDY 644



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 216/479 (45%), Gaps = 54/479 (11%)

Query: 86  FDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 143
            +D P  +  S  WN +I+ Y +      AL++  ++R     +D     S+L  C +  
Sbjct: 114 LNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVS 173

Query: 144 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW----N 199
               G  IH +++K GL+ ++FV N L+ MY +   + +A  VFD+MMERDVVSW     
Sbjct: 174 WTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTT 233

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ-LNDCRNSRSVHGFI-- 256
           +++  Y +      A   F  + Q        T+VS T+++A  +   R       FI  
Sbjct: 234 ALLDMYAKCGHLGLARQLFNGLTQK-------TVVSWTAMIAGCIRSNRLEEGTKLFIRM 286

Query: 257 ------------MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304
                       + +     D I+  A+VDMYAK G IN+A  +F     +D+  WN +I
Sbjct: 287 QEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAII 346

Query: 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC- 363
           TG+A +G   EA+++F  ME    + PN  T++ +L A SH G + +G K+  +++    
Sbjct: 347 TGFAMHGYGEEALDIFAEMER-QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFG 405

Query: 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFF 422
           L   +    C+VD+ G+ G +D+A  +   +P + +++ W A+++   +H          
Sbjct: 406 LVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAA 465

Query: 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 482
            Q+L+  + P++  +  L+     S + +   R+     +  G++  +K  G    +   
Sbjct: 466 TQLLE--IEPENCGYNVLM-----SNIYAAANRW----SDAAGVRKTMKTVG----MKKE 510

Query: 483 AGHL-----GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV--ASDRLFEVDSE 534
            GH      G  H F+      P       +L   R   N E G V   S  L  +D E
Sbjct: 511 PGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLN-EAGYVPDTSTVLLNIDEE 568



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 149/327 (45%), Gaps = 26/327 (7%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           +I+ Y +  +   A++ + Q         D +  P VLKAC  +     GK+IH  VLK 
Sbjct: 130 VITSYTKRNQPRNALNVYAQLR-KMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKK 188

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSW----NAMISGYCQSGNAVEA 113
           G + DVFV  +L+ MY        AR +FD M  RD  SW     A++  Y + G+   A
Sbjct: 189 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLA 248

Query: 114 LDILDEMRLEGVSMDPITVASILPVCARSDNILSG--LLIHL-----------YIVKHGL 160
             + + +  + V    ++  +++  C RS+ +  G  L I +            + K  +
Sbjct: 249 RQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERV 304

Query: 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTT 220
           E +  ++  L++MYAK G +  A R+F + + RD+  WN+II  +        A   F  
Sbjct: 305 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 364

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M++ G++P+ +T + L    +        + +   ++     +  +     +VD+  + G
Sbjct: 365 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 424

Query: 281 IINSACAVFEGLPVK-DVISWNTLITG 306
           +++ A  + + +P+K + I W  L+  
Sbjct: 425 LLDEAHEMIKSMPIKPNTIVWGALVAA 451



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 25/247 (10%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIHCSVL-- 55
           ++ +Y +CG L  A   F   T     +    ++  ++  C     L +G K+   +   
Sbjct: 235 LLDMYAKCGHLGLARQLFNGLT-----QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEE 289

Query: 56  -----------KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 104
                      K   E D  +  +L+ MY + G  N A +LF +   RD   WNA+I+G+
Sbjct: 290 NIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 349

Query: 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG-LLIHLYIVKHGLEFN 163
              G   EALDI  EM  +GV  + IT   +L  C+ +  +  G  L    +   GL   
Sbjct: 350 AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ 409

Query: 164 LFVSNNLINMYAKFGMMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           +     ++++  + G++  A  +   M ++ + + W +++AA     +P    G     Q
Sbjct: 410 IEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNP--QLGELAATQ 467

Query: 223 QAGIQPD 229
              I+P+
Sbjct: 468 LLEIEPE 474


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 333/575 (57%), Gaps = 1/575 (0%)

Query: 131 TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM 190
            V  +L  CA    +     +H  ++  G   + ++SN L+  Y + G +  A  VF + 
Sbjct: 33  AVELLLHRCAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQ 92

Query: 191 MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250
            + +V SW  +I+A  ++  P  A G +  MQ  G  PD   + ++   VA   +    R
Sbjct: 93  PDPNVFSWMMLISACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFCAVADTANLELGR 152

Query: 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 310
           S+   +      + D ++ N++++MY + G ++     F  +P +D +SW T++ G  Q 
Sbjct: 153 SITAPLASTA-MLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQC 211

Query: 311 GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370
           G  + A+E+ ++M++      +  T+ +++ A  ++ A+ QG  +H R+I + +C DV +
Sbjct: 212 GREASALELLRVMDQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRIITSGVCIDVVL 271

Query: 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430
            T L++MY KCGR+D+A  LF Q    +++ ++++++ +  +G    AL  F  M  +G 
Sbjct: 272 HTALLNMYAKCGRVDEARELFDQTLEPNNITFSSMVAAYARNGHFGDALKLFWSMEQDGY 331

Query: 431 RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490
           +PD +TF  +L ACSH G V +   YF  ++ + GI    +H+GC VDL  RAG L  A 
Sbjct: 332 KPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDLLARAGWLADAE 391

Query: 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550
            F+  MP+ PD+  W +LL ACRIH N+E+GA A++ +F +     G Y L+SNIY++ G
Sbjct: 392 KFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAAEHVFRLAPHRAGPYSLLSNIYSDAG 451

Query: 551 KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610
           KW+   +V+ L RDRG+KK  G S IE+N K   F  G+  HP   +I  E++ ++  MK
Sbjct: 452 KWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEFIVGDSWHPDLVQICQEIQRVSKVMK 511

Query: 611 SLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHN 670
             GYVPD   VL D EE+EKE IL  HSE+LAI  G+I +PPK+ I I KN+RVC DCH 
Sbjct: 512 EHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGLGLIKTPPKTTISIVKNIRVCPDCHT 571

Query: 671 WTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
             K IS++TER+I++RD N FHH +DG CSC DYW
Sbjct: 572 AAKVISKVTERKIVIRDINLFHHMEDGNCSCRDYW 606



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 193/455 (42%), Gaps = 46/455 (10%)

Query: 40  ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNA 99
           A R L    ++H  +L  G     +++  L+  Y + G    A  +F   P  +  SW  
Sbjct: 43  AERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDPNVFSWMM 102

Query: 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 159
           +IS   ++     AL     M+L G   D   V++I    A + N+  G  I   +    
Sbjct: 103 LISACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFCAVADTANLELGRSITAPLASTA 162

Query: 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFT 219
           +  +  V+N+L+NMY + G M    R F  M  RD VSW +++A   Q     +A     
Sbjct: 163 MLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLR 222

Query: 220 TMQQAGIQ-PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278
            M Q G +    LT  +L      L+     R +H  I+  G  + DV++  A+++MYAK
Sbjct: 223 VMDQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRIITSGVCI-DVVLHTALLNMYAK 281

Query: 279 LGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338
            G ++ A  +F+     + I++++++  YA+NG   +A+++F  ME+ +   P+  T+  
Sbjct: 282 CGRVDEARELFDQTLEPNNITFSSMVAAYARNGHFGDALKLFWSMEQ-DGYKPDSVTFTH 340

Query: 339 ILPAYSHVGALRQGIKIHARVIKN---CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395
           +L A SH G + Q       +  +    L  + F   C VD+  + G + DA     ++P
Sbjct: 341 VLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHF--GCAVDLLARAGWLADAEKFLNRMP 398

Query: 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455
                                             + PD ++++SLL AC     V  G R
Sbjct: 399 ----------------------------------IPPDSVSWMSLLQACRIHRNVEIGAR 424

Query: 456 YFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMA 489
                +  F + PH    Y  + +++  AG   MA
Sbjct: 425 ---AAEHVFRLAPHRAGPYSLLSNIYSDAGKWDMA 456


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/691 (35%), Positives = 373/691 (53%), Gaps = 58/691 (8%)

Query: 67  ASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR----- 121
           A + H+  R G    AR  F+ MP+R + S+NA+++GY ++     AL +   M      
Sbjct: 22  ARIAHL-ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 122 -----LEGVSMDPITV---ASILPVCARSDNILSGLLIHLYIVKHGL------------E 161
                + G+S+   T+   A+ L       +++S   +    V+HGL            E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221
            N      L+      G +  A R+FD+M +RDVV+W ++++ Y Q+     A   F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 222 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR---GW-----------FMED-- 265
            +  +    ++  ++ S  AQ  +   +R +   +  R    W            +ED  
Sbjct: 201 PKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 266 ----------VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315
                     V   NA++  + + G++++A  VFE +  +D  +W+ +I  Y QN    E
Sbjct: 257 ELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLME 316

Query: 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375
           A+  F+ M     + PN  + +SIL   + +  L  G ++HA +++     DVF  + L+
Sbjct: 317 ALSTFREML-WRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435
            MY KCG +D A  +F+       V WN++I+ +  HG G++AL  F  M   G+ PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495
           T++  LTACS++G V EG+  F+ M     I+P  +HY CMVDL GR+G +  A + I+N
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 496 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555
           MPV PDA IWGAL+GACR+H N E+   A+ +L E++  N G YVL+S+IY +VG+WE  
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDA 555

Query: 556 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGN-RTHPKYEKIYDELRNLTAKMKSLGY 614
            ++R     R L K+PG S IE + +V +F +G+   HP++  I   L  L   +   GY
Sbjct: 556 SKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGY 615

Query: 615 VPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKF 674
             D SFVL D++E++K H L  HSER A+A+G++  P   PI++ KNLRVCGDCH+  K 
Sbjct: 616 SADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKL 675

Query: 675 ISQITEREIIVRDSNRFHHFKDGICSCGDYW 705
           I++IT REII+RD+NRFHHFKDG CSC DYW
Sbjct: 676 IAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 184/430 (42%), Gaps = 72/430 (16%)

Query: 168 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227
           N  I   A+ G +  A   F+ M  R   S+N+++A Y ++  P  A G F  M    + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 228 ----------------PDLL----------TLVSLTSIV------AQLNDC--------- 246
                           PD            ++VS TS++        L D          
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 247 RNSRS---VHGFIMRRGWFME-----------DVIIGNAVVDMYAKLGIINSACAVFEGL 292
           RN  S   + G ++  G   E           DV+   A++  Y + G I  A A+F+ +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 293 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352
           P ++V+SW  +I+GYAQNG  + A ++F++M E NE+     ++ ++L  Y   G +   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTAMLVGYIQAGHVEDA 255

Query: 353 IKIHARVIKNCLCFDVFVATCLVDM--YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 410
            ++   + ++       VA C   M  +G+ G +D A ++F ++       W+A+I  + 
Sbjct: 256 AELFNAMPEHP------VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470
            +    +AL+ FR+ML  GVRP++ + +S+LT C+   ++  G R  H           +
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG-REVHAAMLRCSFDMDV 368

Query: 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME--LGAVASDRL 528
                ++ ++ + G+L  A         + D  +W +++     HG  E  LG     RL
Sbjct: 369 FAVSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 529 FEVDSENVGY 538
             +  + + Y
Sbjct: 428 AGMSPDGITY 437



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 6/209 (2%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV---DGKKIHCSVLKL 57
           MI  Y +   L EA+  F +  L  G+RP++ +   +L  C  L     G+++H ++L+ 
Sbjct: 304 MIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC 362

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
            F+ DVF  ++L+ MY + G  + A+++F     +D   WN+MI+GY Q G   +AL I 
Sbjct: 363 SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIF 422

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLI-HLYIVKHGLEFNLFVSNNLINMYAK 176
            +MRL G+S D IT    L  C+ +  +  G  I +   V   +       + ++++  +
Sbjct: 423 HDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGR 482

Query: 177 FGMMRHALRVFDQM-MERDVVSWNSIIAA 204
            G++  A  +   M +E D V W +++ A
Sbjct: 483 SGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 372/619 (60%), Gaps = 6/619 (0%)

Query: 1   MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK-ACRN-LVD-GKKIHCSVLKL 57
           MI+ YV+CG    A+  F    ++S  +PD  TF  VL  +C   +V+ G+++H  V++ 
Sbjct: 82  MINGYVQCGESDSAIKLFKDM-MSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRS 140

Query: 58  GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL 117
           G ++   V  +L+ +Y +      ARKLFD MP  D   WN MI GY Q+G   +A  + 
Sbjct: 141 GLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLF 200

Query: 118 DEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 177
           +EM   G+  D IT  S LP  A S ++     IH YIV+HG+  ++++++ LI++Y K 
Sbjct: 201 NEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKC 260

Query: 178 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237
                A ++F+   + D+V + ++I+ Y  +     A   F  + Q  + P+ LT  S+ 
Sbjct: 261 RDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSIL 320

Query: 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 297
              A L   +  R +HG+I++     E   +G+A+++MYAK G ++ A  +F  + +KD 
Sbjct: 321 PACAGLAAIKLGRELHGYIIKNE-LEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDA 379

Query: 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 357
           I WN++IT ++Q+G   EAI +F+ M     +  +  T  + L A +++ AL  G +IH 
Sbjct: 380 ICWNSIITSFSQDGKPEEAIYLFRQMG-MEGVKYDCVTVSAALSACANIPALHYGKEIHG 438

Query: 358 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDK 417
            +IK     D+F  + L++MY KCG+++ A  +F  +   + V WN+II+ +G HG    
Sbjct: 439 FMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLAD 498

Query: 418 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477
           +L  F  ML+EG++PDHITF+++L++C H+G V +G RYF  M EE+GI   ++HY CM 
Sbjct: 499 SLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMA 558

Query: 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537
           DLFGRAGHL  A   I +MP  P AS+WG LLGACR+HGN+EL  VAS  L +++ +N G
Sbjct: 559 DLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSG 618

Query: 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEK 597
           YY+L++++ A+ GKW  V +++ L ++RG++K PG S IEVNN   +F+  + +HP+  +
Sbjct: 619 YYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPESPQ 678

Query: 598 IYDELRNLTAKMKSLGYVP 616
           IY  L++L  +++ +GYVP
Sbjct: 679 IYSLLKSLLLELRKVGYVP 697



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 165/551 (29%), Positives = 294/551 (53%), Gaps = 11/551 (1%)

Query: 23  LTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79
           L  G+ PD YTFPPV+K C  L +   GK I   +L++GF+ D+FVA+SL+ +Y   G  
Sbjct: 2   LGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCI 61

Query: 80  NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139
             AR+ FD M  +D   WN MI+GY Q G +  A+ +  +M       D +T A +L + 
Sbjct: 62  EDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSIS 121

Query: 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 199
                +  G  +H  +V+ GL+F   V N L+ +Y+K   +  A ++FD M + D+V WN
Sbjct: 122 CSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWN 181

Query: 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259
            +I  Y Q+     A   F  M  AGI+PD +T  S    +A+ +  +  + +HG+I+R 
Sbjct: 182 RMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRH 241

Query: 260 GWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 319
           G  + DV + +A++D+Y K      AC +F      D++ +  +I+GY  NG+  +A+E+
Sbjct: 242 GVIL-DVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 320 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379
           F+ + +  ++ PN  T+ SILPA + + A++ G ++H  +IKN L     V + +++MY 
Sbjct: 301 FRWLLQ-KKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYA 359

Query: 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439
           KCGR+D A  +F ++    ++ WN+II+     G+ ++A+  FRQM  EGV+ D +T  +
Sbjct: 360 KCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSA 419

Query: 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 499
            L+AC++   +  G+   H    +   +  L     +++++ + G L +A   + N+   
Sbjct: 420 ALSACANIPALHYGKE-IHGFMIKGAFESDLFDMSALINMYAKCGKLNIAR-LVFNLMQE 477

Query: 500 PDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWE-GVD 556
            +   W +++ A   HG +         + E  +  +++ +  ++S+   + G+ E GV 
Sbjct: 478 KNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSC-GHAGQVEDGVR 536

Query: 557 EVRSLARDRGL 567
             R +  + G+
Sbjct: 537 YFRCMTEEYGI 547



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 221 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280
           M   G+ PD  T   +      LN+ R  + +   I+  G F  D+ + ++++ +YA  G
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMG-FDLDMFVASSLIKLYADNG 59

Query: 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340
            I  A   F+ +  KD + WN +I GY Q G +  AI++F+ M   +E  P+  T+  +L
Sbjct: 60  CIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMS-SEAKPDSVTFACVL 118

Query: 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 400
                   +  G ++H  V+++ L F   V   LV +Y K  ++ DA  LF  +P+   V
Sbjct: 119 SISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLV 178

Query: 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMM 460
            WN +I  +  +G  D A   F +M+  G++PD ITF S L + + S  + + +   H  
Sbjct: 179 VWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKE-IHGY 237

Query: 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516
               G+   +     ++DL+ +     MA     N+  + D  I+ A++    ++G
Sbjct: 238 IVRHGVILDVYLNSALIDLYFKCRDAVMACKMF-NLSTKFDIVIYTAMISGYVLNG 292


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 322/544 (59%), Gaps = 3/544 (0%)

Query: 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 222
           N   SN LIN Y + G + +A +VFD+M +R + +WN++IA   Q          F  M 
Sbjct: 22  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 81

Query: 223 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282
             G  PD  TL S+ S  A L      + +HG+ ++ G  + D+++ +++  MY + G +
Sbjct: 82  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLEL-DLVVNSSLAHMYMRNGKL 140

Query: 283 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342
                V   +PV+++++WNTLI G AQNG     + +++MM+  +   PN+ T+V++L +
Sbjct: 141 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMK-ISGCRPNKITFVTVLSS 199

Query: 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPW 402
            S +    QG +IHA  IK      V V + L+ MY KCG + DA   F +      V W
Sbjct: 200 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 259

Query: 403 NAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461
           +++IS +G HGQGD+A+  F  M ++  +  + + F++LL ACSHSGL  +G   F MM 
Sbjct: 260 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMV 319

Query: 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521
           E++G KP LKHY C+VDL GRAG L  A   I++MP++ D  IW  LL AC IH N E+ 
Sbjct: 320 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMA 379

Query: 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581
                 + ++D  +   YVL++N++A+  +W  V EVR   RD+ +KK  G S  E   +
Sbjct: 380 QRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGE 439

Query: 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERL 641
           V  F  G+R+  K ++IY  L+ LT +MK  GY PD + VL D++E+EKE  L  HSE+L
Sbjct: 440 VHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKL 499

Query: 642 AIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSC 701
           A+AF ++  P  +PI+I KNLRVC DCH   K+IS I  REI +RD +RFHHF +G CSC
Sbjct: 500 AVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSC 559

Query: 702 GDYW 705
           GDYW
Sbjct: 560 GDYW 563



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 23/370 (6%)

Query: 69  LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128
           L++ Y R G    ARK+FD+MP R   +WNAMI+G  Q     E L +  EM   G S D
Sbjct: 29  LINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPD 88

Query: 129 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 188
             T+ S+    A   ++  G  IH Y +K+GLE +L V+++L +MY + G ++    V  
Sbjct: 89  EYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIR 148

Query: 189 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248
            M  R++V+WN++I    Q+  P T    +  M+ +G +P+ +T V++ S  + L     
Sbjct: 149 SMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ 208

Query: 249 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308
            + +H   ++ G     V + ++++ MY+K G +  A   F     +D + W+++I+ Y 
Sbjct: 209 GQQIHAEAIKIG-ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYG 267

Query: 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 368
            +G   EAIE+F  M E   +  N+  ++++L A SH G   +G+++          FD+
Sbjct: 268 FHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLEL----------FDM 317

Query: 369 FVA-----------TCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGD 416
            V            TC+VD+ G+ G +D A ++   +P ++  V W  ++S   IH   +
Sbjct: 318 MVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAE 377

Query: 417 KALNFFRQML 426
            A   F+++L
Sbjct: 378 MAQRVFKEIL 387



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 26  GLRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA 82
           G  PD YT   V       R++  G++IH   +K G E D+ V +SL HMY R G     
Sbjct: 84  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 143

Query: 83  RKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142
             +   MPVR+  +WN +I G  Q+G     L +   M++ G   + IT  ++L  C+  
Sbjct: 144 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 203

Query: 143 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202
                G  IH   +K G    + V ++LI+MY+K G +  A + F +  + D V W+S+I
Sbjct: 204 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 263

Query: 203 AAYEQSNDPITAHGFFTTM-QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW 261
           +AY        A   F TM +Q  ++ + +  ++L    +          +   ++ +  
Sbjct: 264 SAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYG 323

Query: 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 320
           F   +     VVD+  + G ++ A A+   +P+K D++ W TL++    +  A  A  VF
Sbjct: 324 FKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVF 383

Query: 321 QMMEECNEINPNQGTYVSILPAYSHVGALR 350
           +   E  +I+PN  +   +L A  H  A R
Sbjct: 384 K---EILQIDPND-SACYVLLANVHASAKR 409


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,092,057,123
Number of Sequences: 23463169
Number of extensions: 464535967
Number of successful extensions: 1530824
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9114
Number of HSP's successfully gapped in prelim test: 2811
Number of HSP's that attempted gapping in prelim test: 1296223
Number of HSP's gapped (non-prelim): 64698
length of query: 705
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 555
effective length of database: 8,839,720,017
effective search space: 4906044609435
effective search space used: 4906044609435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 81 (35.8 bits)