Query 005268
Match_columns 705
No_of_seqs 857 out of 4450
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-139 7E-144 1199.0 74.9 697 1-703 158-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-126 8E-131 1065.5 68.3 613 91-705 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-86 5.6E-91 761.3 63.6 676 1-700 57-746 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.6E-70 5.6E-75 614.1 48.3 462 1-468 93-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 6.6E-67 1.4E-71 587.8 55.6 503 60-572 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.1E-64 2.3E-69 569.9 55.6 502 26-532 365-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-31 3E-36 314.8 56.1 546 4-567 304-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-31 7.6E-36 311.5 56.9 545 5-566 271-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 7.1E-34 1.5E-38 234.4 8.2 106 572-695 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2.5E-22 5.5E-27 237.1 55.6 539 4-564 121-739 (1157)
11 PRK11447 cellulose synthase su 99.9 1.7E-22 3.7E-27 238.6 51.1 386 170-566 275-701 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.9E-26 195.1 36.9 446 97-557 51-511 (966)
13 PRK09782 bacteriophage N4 rece 99.9 9.3E-20 2E-24 205.5 53.5 535 8-566 57-707 (987)
14 PRK09782 bacteriophage N4 rece 99.9 8.9E-20 1.9E-24 205.7 50.6 543 2-567 85-742 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 4.4E-20 9.5E-25 184.4 27.1 420 134-567 53-487 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 5.7E-18 1.2E-22 188.1 37.9 250 310-565 307-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 3.9E-19 8.4E-24 187.5 26.6 297 101-435 42-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.1E-18 2.3E-23 184.1 26.7 290 275-572 44-354 (389)
19 PRK15174 Vi polysaccharide exp 99.8 8.9E-17 1.9E-21 177.9 37.1 367 176-565 17-403 (656)
20 PRK10049 pgaA outer membrane p 99.8 9E-16 2E-20 173.6 44.4 154 101-294 22-178 (765)
21 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 177.3 38.4 385 170-565 21-456 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 6.8E-16 1.5E-20 171.5 40.2 418 96-536 129-576 (615)
23 PRK14574 hmsH outer membrane p 99.8 6E-15 1.3E-19 163.5 42.8 435 72-538 43-520 (822)
24 KOG2002 TPR-containing nuclear 99.8 8.1E-15 1.8E-19 155.1 41.2 550 8-568 177-801 (1018)
25 PRK15174 Vi polysaccharide exp 99.8 8E-16 1.7E-20 170.3 34.6 326 230-567 42-383 (656)
26 PRK14574 hmsH outer membrane p 99.7 3E-14 6.6E-19 158.0 42.6 441 97-566 38-514 (822)
27 KOG2002 TPR-containing nuclear 99.7 3.8E-14 8.2E-19 150.1 38.8 541 11-566 146-746 (1018)
28 KOG4422 Uncharacterized conser 99.7 4.3E-13 9.3E-18 129.4 36.9 433 7-496 127-587 (625)
29 KOG2003 TPR repeat-containing 99.7 1.2E-13 2.7E-18 133.7 29.0 444 100-551 207-709 (840)
30 KOG0495 HAT repeat protein [RN 99.7 3.9E-12 8.5E-17 129.1 39.2 496 60-578 377-891 (913)
31 KOG4422 Uncharacterized conser 99.6 2.1E-11 4.6E-16 117.9 34.9 416 94-530 116-589 (625)
32 KOG2076 RNA polymerase III tra 99.6 2.7E-10 5.9E-15 120.6 44.3 517 43-564 154-768 (895)
33 PF13429 TPR_15: Tetratricopep 99.5 2.1E-14 4.6E-19 143.3 10.1 255 304-564 15-276 (280)
34 KOG2076 RNA polymerase III tra 99.5 2.2E-11 4.8E-16 128.7 29.9 325 244-575 153-522 (895)
35 KOG4318 Bicoid mRNA stability 99.5 1E-10 2.2E-15 123.1 32.9 530 16-575 11-603 (1088)
36 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.7E-14 109.0 42.0 497 28-543 376-892 (913)
37 KOG0547 Translocase of outer m 99.5 7E-11 1.5E-15 116.4 29.9 213 346-564 339-565 (606)
38 KOG1915 Cell cycle control pro 99.5 1.3E-09 2.9E-14 107.0 38.2 491 62-564 72-624 (677)
39 KOG1915 Cell cycle control pro 99.5 3.2E-10 7E-15 111.3 31.8 390 175-575 84-510 (677)
40 KOG1126 DNA-binding cell divis 99.4 4.1E-12 8.9E-17 130.2 18.5 244 312-565 334-586 (638)
41 KOG1155 Anaphase-promoting com 99.4 6.2E-10 1.3E-14 109.2 32.2 370 160-565 160-553 (559)
42 KOG1126 DNA-binding cell divis 99.4 7.9E-12 1.7E-16 128.1 19.8 276 281-566 334-621 (638)
43 PRK10747 putative protoheme IX 99.4 1.1E-10 2.4E-15 122.0 27.3 224 273-532 160-391 (398)
44 KOG1155 Anaphase-promoting com 99.4 5.3E-09 1.2E-13 102.8 36.0 383 124-531 159-553 (559)
45 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.6E-15 120.0 29.5 283 206-529 95-397 (409)
46 PRK10747 putative protoheme IX 99.4 1.2E-10 2.6E-15 121.8 25.9 285 107-427 97-389 (398)
47 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.2E-17 130.0 11.1 214 243-461 57-275 (280)
48 KOG1173 Anaphase-promoting com 99.4 2.8E-09 6.1E-14 107.4 33.3 263 296-565 243-518 (611)
49 KOG2003 TPR repeat-containing 99.4 2.2E-10 4.7E-15 111.6 23.4 428 131-565 200-689 (840)
50 TIGR00540 hemY_coli hemY prote 99.3 5E-10 1.1E-14 117.8 26.0 295 98-427 86-398 (409)
51 TIGR02521 type_IV_pilW type IV 99.3 4.6E-10 9.9E-15 108.9 20.8 198 367-565 30-232 (234)
52 PF13041 PPR_2: PPR repeat fam 99.3 7.9E-12 1.7E-16 87.3 5.9 50 92-141 1-50 (50)
53 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.9E-14 112.3 25.6 171 368-564 283-478 (508)
54 COG2956 Predicted N-acetylgluc 99.3 4.3E-09 9.3E-14 98.8 25.4 286 208-530 48-346 (389)
55 KOG1174 Anaphase-promoting com 99.3 3.3E-08 7.1E-13 95.9 31.3 304 227-537 191-506 (564)
56 COG2956 Predicted N-acetylgluc 99.3 3.5E-09 7.5E-14 99.5 23.7 216 107-325 48-277 (389)
57 KOG1173 Anaphase-promoting com 99.2 1.2E-08 2.7E-13 102.9 28.8 276 262-543 240-530 (611)
58 COG3071 HemY Uncharacterized e 99.2 1.5E-08 3.2E-13 98.4 28.0 300 98-433 86-395 (400)
59 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6E-16 84.5 6.3 50 397-446 1-50 (50)
60 COG3071 HemY Uncharacterized e 99.2 2.2E-08 4.7E-13 97.2 27.4 286 208-530 97-389 (400)
61 KOG4318 Bicoid mRNA stability 99.2 7.1E-09 1.5E-13 109.5 25.1 253 115-383 11-286 (1088)
62 PRK12370 invasion protein regu 99.2 2.2E-09 4.7E-14 117.4 21.5 260 296-566 255-536 (553)
63 KOG3785 Uncharacterized conser 99.2 1.3E-07 2.8E-12 89.9 29.3 432 102-571 65-520 (557)
64 KOG0547 Translocase of outer m 99.1 1.3E-07 2.7E-12 94.0 29.2 407 97-532 118-567 (606)
65 KOG4162 Predicted calmodulin-b 99.1 3.6E-07 7.9E-12 95.9 33.6 451 107-566 240-784 (799)
66 KOG2047 mRNA splicing factor [ 99.1 1.4E-05 3E-10 82.5 43.7 454 68-563 107-613 (835)
67 KOG2047 mRNA splicing factor [ 99.1 2.3E-06 4.9E-11 88.0 37.1 492 48-565 122-687 (835)
68 KOG2376 Signal recognition par 99.1 6.4E-07 1.4E-11 91.2 32.0 433 101-558 19-513 (652)
69 KOG4162 Predicted calmodulin-b 99.1 3.2E-06 6.8E-11 89.0 37.2 435 57-537 317-789 (799)
70 PRK11189 lipoprotein NlpI; Pro 99.0 1.1E-08 2.3E-13 102.4 18.5 211 347-566 40-266 (296)
71 PRK12370 invasion protein regu 99.0 1.5E-08 3.3E-13 110.8 21.1 211 347-565 275-502 (553)
72 COG3063 PilF Tfp pilus assembl 99.0 1.2E-08 2.7E-13 91.6 15.8 161 402-567 38-204 (250)
73 TIGR02521 type_IV_pilW type IV 99.0 3.7E-08 8.1E-13 95.4 21.1 197 297-531 31-232 (234)
74 KOG1129 TPR repeat-containing 99.0 8.8E-09 1.9E-13 96.7 15.3 230 301-566 227-459 (478)
75 KOG0985 Vesicle coat protein c 99.0 1.2E-06 2.7E-11 93.9 32.3 468 66-562 609-1246(1666)
76 KOG1174 Anaphase-promoting com 99.0 2.1E-06 4.5E-11 83.7 29.4 387 163-565 96-500 (564)
77 KOG3785 Uncharacterized conser 99.0 4.9E-06 1.1E-10 79.5 31.0 442 101-566 29-491 (557)
78 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-07 3.2E-12 94.2 22.1 217 311-535 40-269 (296)
79 KOG1129 TPR repeat-containing 98.9 1.9E-08 4.2E-13 94.5 14.2 190 372-566 227-425 (478)
80 KOG1840 Kinesin light chain [C 98.9 3.8E-07 8.3E-12 95.2 23.5 200 303-530 247-478 (508)
81 PF12569 NARP1: NMDA receptor- 98.9 5.2E-06 1.1E-10 88.0 31.3 251 301-560 198-515 (517)
82 KOG1156 N-terminal acetyltrans 98.9 5.2E-05 1.1E-09 78.6 36.7 435 47-528 26-508 (700)
83 KOG1127 TPR repeat-containing 98.9 7E-06 1.5E-10 88.6 31.1 510 47-564 475-1103(1238)
84 KOG1125 TPR repeat-containing 98.8 1.5E-07 3.2E-12 95.7 17.0 219 344-565 296-527 (579)
85 KOG0985 Vesicle coat protein c 98.8 0.0001 2.2E-09 79.8 38.1 222 297-548 1104-1325(1666)
86 KOG3616 Selective LIM binding 98.8 4.3E-06 9.2E-11 86.9 26.8 280 100-422 563-847 (1636)
87 PRK04841 transcriptional regul 98.8 0.00011 2.5E-09 86.6 43.3 364 171-565 348-760 (903)
88 KOG0624 dsRNA-activated protei 98.8 5.8E-06 1.3E-10 78.7 25.4 310 167-537 41-376 (504)
89 PF12569 NARP1: NMDA receptor- 98.8 4.7E-06 1E-10 88.3 27.8 280 203-530 12-333 (517)
90 KOG1156 N-terminal acetyltrans 98.8 1.1E-05 2.4E-10 83.4 29.3 384 141-566 19-469 (700)
91 KOG2376 Signal recognition par 98.7 0.00032 6.9E-09 72.2 37.2 46 481-527 469-516 (652)
92 KOG3616 Selective LIM binding 98.7 7E-05 1.5E-09 78.2 32.3 259 276-566 742-1025(1636)
93 COG3063 PilF Tfp pilus assembl 98.7 5.7E-06 1.2E-10 74.8 19.9 166 368-536 69-241 (250)
94 cd05804 StaR_like StaR_like; a 98.6 1.2E-05 2.5E-10 83.6 25.3 257 305-566 51-337 (355)
95 KOG0548 Molecular co-chaperone 98.6 1.7E-05 3.8E-10 80.4 24.8 214 338-565 229-455 (539)
96 KOG3617 WD40 and TPR repeat-co 98.6 0.00062 1.4E-08 72.5 36.0 28 538-565 1332-1359(1416)
97 PF12854 PPR_1: PPR repeat 98.6 5.2E-08 1.1E-12 60.9 3.7 34 57-90 1-34 (34)
98 KOG4340 Uncharacterized conser 98.6 3.1E-05 6.8E-10 72.4 23.3 403 134-565 15-443 (459)
99 KOG0548 Molecular co-chaperone 98.6 1.5E-05 3.2E-10 80.9 22.8 438 71-548 10-472 (539)
100 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.3E-11 85.6 15.8 151 374-563 108-263 (290)
101 PF04733 Coatomer_E: Coatomer 98.6 5.1E-06 1.1E-10 82.0 18.8 156 265-427 101-264 (290)
102 cd05804 StaR_like StaR_like; a 98.5 0.00014 3.1E-09 75.5 30.0 91 301-394 118-212 (355)
103 PRK15359 type III secretion sy 98.5 1.6E-06 3.5E-11 76.2 12.2 120 420-546 14-136 (144)
104 PRK04841 transcriptional regul 98.5 0.00047 1E-08 81.4 36.3 259 204-462 461-759 (903)
105 TIGR03302 OM_YfiO outer membra 98.5 5.3E-06 1.2E-10 80.5 16.6 179 367-565 32-232 (235)
106 KOG3617 WD40 and TPR repeat-co 98.5 0.00011 2.3E-09 78.0 26.5 401 61-519 724-1188(1416)
107 KOG1070 rRNA processing protei 98.5 7.6E-06 1.6E-10 91.3 18.9 200 365-568 1455-1666(1710)
108 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.3E-12 58.3 4.0 33 159-191 2-34 (34)
109 KOG1128 Uncharacterized conser 98.5 5.6E-06 1.2E-10 86.8 16.3 219 263-532 395-617 (777)
110 PRK15363 pathogenicity island 98.5 2.2E-06 4.7E-11 73.9 11.1 120 469-611 34-155 (157)
111 PRK10370 formate-dependent nit 98.4 6.8E-06 1.5E-10 76.4 15.1 118 447-566 52-174 (198)
112 KOG1127 TPR repeat-containing 98.4 0.00046 1E-08 75.2 30.2 498 47-562 511-1135(1238)
113 KOG1914 mRNA cleavage and poly 98.4 0.0032 7E-08 64.3 35.9 421 60-487 17-527 (656)
114 KOG1125 TPR repeat-containing 98.4 2E-05 4.4E-10 80.6 18.9 212 241-461 296-525 (579)
115 PRK15359 type III secretion sy 98.4 4.3E-06 9.4E-11 73.5 12.4 99 466-566 22-122 (144)
116 KOG4340 Uncharacterized conser 98.4 3.8E-05 8.3E-10 71.8 17.7 177 381-561 125-335 (459)
117 KOG1128 Uncharacterized conser 98.3 1.5E-05 3.3E-10 83.6 15.0 188 364-566 394-583 (777)
118 TIGR03302 OM_YfiO outer membra 98.3 3.3E-05 7.1E-10 74.9 16.8 180 333-533 33-234 (235)
119 PRK10370 formate-dependent nit 98.3 5.2E-05 1.1E-09 70.6 17.3 154 375-540 23-182 (198)
120 PRK15179 Vi polysaccharide bio 98.3 4.5E-05 9.8E-10 84.1 18.6 139 397-540 84-226 (694)
121 PLN02789 farnesyltranstransfer 98.3 0.00014 3E-09 72.9 20.4 169 377-549 80-268 (320)
122 COG5010 TadD Flp pilus assembl 98.2 3.5E-05 7.6E-10 71.4 14.4 135 430-566 62-198 (257)
123 COG4783 Putative Zn-dependent 98.2 0.00021 4.4E-09 72.2 20.3 147 398-566 305-455 (484)
124 KOG1070 rRNA processing protei 98.2 0.0003 6.5E-09 79.2 22.5 216 232-449 1460-1686(1710)
125 TIGR00756 PPR pentatricopeptid 98.2 3.4E-06 7.3E-11 53.6 4.5 35 95-129 1-35 (35)
126 COG5010 TadD Flp pilus assembl 98.2 0.00011 2.3E-09 68.3 15.6 152 372-527 70-227 (257)
127 PLN02789 farnesyltranstransfer 98.1 0.0001 2.2E-09 73.8 16.6 182 378-564 47-249 (320)
128 PRK14720 transcript cleavage f 98.1 0.00023 5.1E-09 79.3 20.7 236 194-513 30-268 (906)
129 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.5E-11 53.1 4.5 35 400-434 1-35 (35)
130 KOG0624 dsRNA-activated protei 98.1 0.0083 1.8E-07 57.9 27.7 251 239-535 164-426 (504)
131 TIGR02552 LcrH_SycD type III s 98.1 3.1E-05 6.6E-10 67.7 10.0 95 471-565 18-114 (135)
132 PRK15179 Vi polysaccharide bio 98.0 0.00026 5.5E-09 78.3 18.6 141 364-509 82-229 (694)
133 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 51.2 4.3 34 94-127 1-34 (34)
134 COG4783 Putative Zn-dependent 97.9 0.00052 1.1E-08 69.4 17.2 121 442-565 314-437 (484)
135 TIGR02552 LcrH_SycD type III s 97.9 0.00017 3.7E-09 62.9 12.2 114 421-538 5-121 (135)
136 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 49.6 4.4 33 400-432 2-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00014 3.1E-09 74.2 12.7 122 437-563 172-295 (395)
138 KOG2053 Mitochondrial inherita 97.9 0.064 1.4E-06 58.7 37.8 122 75-200 21-150 (932)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00036 7.8E-09 71.3 15.3 127 369-500 170-298 (395)
140 KOG3081 Vesicle coat complex C 97.8 0.0044 9.6E-08 57.8 19.9 146 408-563 117-269 (299)
141 KOG1914 mRNA cleavage and poly 97.8 0.059 1.3E-06 55.6 35.4 438 92-560 18-534 (656)
142 PRK14720 transcript cleavage f 97.8 0.0079 1.7E-07 67.6 24.9 147 232-410 118-268 (906)
143 KOG3060 Uncharacterized conser 97.8 0.0015 3.2E-08 60.4 15.6 153 408-564 61-219 (289)
144 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.5E-10 47.3 3.6 31 95-125 1-31 (31)
145 cd00189 TPR Tetratricopeptide 97.7 0.00019 4E-09 57.7 8.6 93 473-565 3-97 (100)
146 PF13414 TPR_11: TPR repeat; P 97.7 4.5E-05 9.9E-10 57.4 4.4 65 501-565 2-67 (69)
147 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 46.6 3.6 31 400-430 1-31 (31)
148 KOG0553 TPR repeat-containing 97.7 0.00025 5.5E-09 67.2 9.6 99 444-545 91-192 (304)
149 PRK10153 DNA-binding transcrip 97.7 0.0013 2.8E-08 70.6 16.1 143 393-537 331-488 (517)
150 PLN03088 SGT1, suppressor of 97.7 0.00041 8.9E-09 71.2 11.9 97 443-542 11-110 (356)
151 PF09976 TPR_21: Tetratricopep 97.7 0.00092 2E-08 59.0 12.6 114 412-528 24-144 (145)
152 PF09976 TPR_21: Tetratricopep 97.7 0.0021 4.6E-08 56.7 14.8 114 447-561 24-143 (145)
153 KOG3060 Uncharacterized conser 97.6 0.0078 1.7E-07 55.7 18.3 162 375-539 59-228 (289)
154 PF12895 Apc3: Anaphase-promot 97.6 3.3E-05 7.1E-10 60.8 2.8 77 484-561 3-83 (84)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00078 1.7E-08 57.1 11.3 100 439-538 7-112 (119)
156 COG3898 Uncharacterized membra 97.6 0.054 1.2E-06 53.5 24.5 246 309-573 132-398 (531)
157 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0004 8.7E-09 58.8 9.4 96 471-566 3-106 (119)
158 KOG3081 Vesicle coat complex C 97.6 0.0042 9.1E-08 57.9 16.0 141 419-566 93-237 (299)
159 PF04840 Vps16_C: Vps16, C-ter 97.6 0.036 7.8E-07 55.5 24.1 122 371-512 180-301 (319)
160 KOG0553 TPR repeat-containing 97.5 0.00034 7.4E-09 66.3 8.3 88 478-565 89-178 (304)
161 PF13432 TPR_16: Tetratricopep 97.5 0.00013 2.9E-09 54.0 4.6 58 508-565 3-60 (65)
162 PRK15331 chaperone protein Sic 97.5 0.0019 4E-08 56.3 11.6 90 475-564 42-133 (165)
163 KOG0550 Molecular chaperone (D 97.5 0.0027 5.8E-08 62.8 13.6 89 478-566 257-351 (486)
164 PF13432 TPR_16: Tetratricopep 97.4 0.00052 1.1E-08 50.8 6.3 61 476-536 3-65 (65)
165 PRK02603 photosystem I assembl 97.4 0.00086 1.9E-08 61.2 9.1 80 472-551 37-121 (172)
166 CHL00033 ycf3 photosystem I as 97.4 0.00069 1.5E-08 61.6 8.4 93 470-562 35-139 (168)
167 PLN03088 SGT1, suppressor of 97.3 0.0022 4.7E-08 65.9 11.6 101 405-510 8-111 (356)
168 PRK02603 photosystem I assembl 97.3 0.0049 1.1E-07 56.2 12.8 127 401-551 37-166 (172)
169 cd00189 TPR Tetratricopeptide 97.3 0.0029 6.2E-08 50.5 10.0 58 402-461 3-61 (100)
170 COG4235 Cytochrome c biogenesi 97.3 0.0015 3.3E-08 62.5 9.1 105 467-571 153-262 (287)
171 PF04840 Vps16_C: Vps16, C-ter 97.2 0.17 3.8E-06 50.7 23.8 105 269-390 180-284 (319)
172 PF13371 TPR_9: Tetratricopept 97.2 0.00057 1.2E-08 52.0 5.0 58 509-566 2-59 (73)
173 KOG2053 Mitochondrial inherita 97.2 0.52 1.1E-05 52.0 38.1 159 402-563 439-606 (932)
174 KOG2280 Vacuolar assembly/sort 97.2 0.41 8.9E-06 51.6 26.8 343 122-495 425-795 (829)
175 KOG1538 Uncharacterized conser 97.1 0.059 1.3E-06 56.5 19.5 195 273-530 639-845 (1081)
176 PF14938 SNAP: Soluble NSF att 97.1 0.038 8.3E-07 54.9 18.2 92 443-534 123-228 (282)
177 PF05843 Suf: Suppressor of fo 97.1 0.0097 2.1E-07 58.9 13.8 133 401-536 3-141 (280)
178 KOG2041 WD40 repeat protein [G 97.1 0.52 1.1E-05 50.3 26.8 201 126-357 689-902 (1189)
179 CHL00033 ycf3 photosystem I as 97.1 0.015 3.3E-07 52.7 14.1 78 401-481 37-117 (168)
180 PF12895 Apc3: Anaphase-promot 97.1 0.0014 3.1E-08 51.4 6.3 80 412-495 2-83 (84)
181 PF14559 TPR_19: Tetratricopep 97.1 0.00033 7.1E-09 52.5 2.2 52 514-565 3-54 (68)
182 COG4700 Uncharacterized protei 97.1 0.027 5.8E-07 49.7 13.9 148 411-565 68-222 (251)
183 PF07079 DUF1347: Protein of u 97.1 0.45 9.6E-06 48.4 30.7 35 297-334 298-332 (549)
184 PF13431 TPR_17: Tetratricopep 97.0 0.00019 4.1E-09 44.7 0.5 32 525-556 2-33 (34)
185 PF14559 TPR_19: Tetratricopep 97.0 0.00073 1.6E-08 50.5 3.7 47 447-496 4-51 (68)
186 PF13414 TPR_11: TPR repeat; P 96.9 0.0014 3E-08 49.2 4.7 64 470-533 3-69 (69)
187 PRK10153 DNA-binding transcrip 96.9 0.012 2.6E-07 63.2 13.2 135 429-567 332-484 (517)
188 COG4700 Uncharacterized protei 96.9 0.018 3.9E-07 50.7 11.4 107 460-566 79-190 (251)
189 PF08579 RPM2: Mitochondrial r 96.9 0.011 2.4E-07 47.6 9.1 77 405-482 31-116 (120)
190 PF14938 SNAP: Soluble NSF att 96.8 0.6 1.3E-05 46.4 27.3 155 301-497 98-264 (282)
191 PF08579 RPM2: Mitochondrial r 96.8 0.018 3.9E-07 46.4 10.0 80 97-176 28-116 (120)
192 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0031 6.7E-08 64.2 7.0 61 471-531 76-141 (453)
193 PRK15363 pathogenicity island 96.8 0.027 5.9E-07 49.0 11.8 91 373-465 40-134 (157)
194 PRK10866 outer membrane biogen 96.8 0.069 1.5E-06 51.5 16.0 168 377-563 41-239 (243)
195 KOG2041 WD40 repeat protein [G 96.8 1 2.2E-05 48.2 26.1 381 79-529 679-1084(1189)
196 PF10037 MRP-S27: Mitochondria 96.8 0.018 3.8E-07 59.4 12.3 116 332-447 65-186 (429)
197 KOG2796 Uncharacterized conser 96.8 0.32 6.9E-06 45.6 18.9 232 297-536 69-320 (366)
198 PF12688 TPR_5: Tetratrico pep 96.8 0.033 7.2E-07 46.6 11.8 92 404-495 6-100 (120)
199 PF05843 Suf: Suppressor of fo 96.7 0.022 4.7E-07 56.5 12.3 85 244-333 50-140 (280)
200 PF10037 MRP-S27: Mitochondria 96.7 0.026 5.7E-07 58.2 12.9 81 198-279 106-186 (429)
201 PF06239 ECSIT: Evolutionarily 96.7 0.017 3.6E-07 52.7 10.0 96 84-179 35-153 (228)
202 PF13428 TPR_14: Tetratricopep 96.7 0.0028 6.1E-08 42.4 4.0 42 503-544 2-43 (44)
203 PF07079 DUF1347: Protein of u 96.6 0.97 2.1E-05 46.0 32.2 72 490-562 444-521 (549)
204 PF13281 DUF4071: Domain of un 96.5 0.19 4.2E-06 50.8 17.6 160 373-535 146-338 (374)
205 PRK10803 tol-pal system protei 96.5 0.01 2.2E-07 57.7 8.4 61 505-565 183-246 (263)
206 KOG2796 Uncharacterized conser 96.5 0.14 3.1E-06 47.9 15.0 167 269-438 139-323 (366)
207 KOG1130 Predicted G-alpha GTPa 96.5 0.25 5.4E-06 49.3 17.2 92 402-493 238-338 (639)
208 PF06239 ECSIT: Evolutionarily 96.5 0.021 4.6E-07 52.1 9.2 89 396-485 44-153 (228)
209 PF12688 TPR_5: Tetratrico pep 96.4 0.072 1.6E-06 44.6 11.6 105 201-307 7-116 (120)
210 KOG1130 Predicted G-alpha GTPa 96.4 0.0087 1.9E-07 59.1 6.7 129 436-564 197-343 (639)
211 PF13371 TPR_9: Tetratricopept 96.3 0.01 2.2E-07 45.0 5.8 63 478-540 3-67 (73)
212 KOG0543 FKBP-type peptidyl-pro 96.3 0.023 5E-07 56.7 9.2 84 502-611 257-340 (397)
213 COG0457 NrfG FOG: TPR repeat [ 96.3 1.1 2.3E-05 42.5 21.6 192 370-565 61-265 (291)
214 PRK10803 tol-pal system protei 96.2 0.05 1.1E-06 52.9 11.0 92 445-536 154-251 (263)
215 PRK10866 outer membrane biogen 96.1 0.67 1.4E-05 44.7 18.4 57 303-362 38-98 (243)
216 KOG2280 Vacuolar assembly/sort 96.1 2.8 6E-05 45.7 25.2 319 223-559 425-793 (829)
217 KOG0550 Molecular chaperone (D 96.0 2 4.4E-05 43.3 21.4 83 378-462 259-349 (486)
218 KOG1538 Uncharacterized conser 95.9 0.41 9E-06 50.5 16.3 210 63-294 556-801 (1081)
219 COG3898 Uncharacterized membra 95.9 2.2 4.8E-05 42.7 25.1 212 278-496 166-389 (531)
220 PF13424 TPR_12: Tetratricopep 95.8 0.0084 1.8E-07 46.2 3.0 60 504-563 7-73 (78)
221 PRK11906 transcriptional regul 95.8 0.45 9.7E-06 49.1 15.8 174 382-560 232-431 (458)
222 PF13424 TPR_12: Tetratricopep 95.6 0.015 3.2E-07 44.8 3.8 58 473-530 8-74 (78)
223 PF09205 DUF1955: Domain of un 95.6 0.47 1E-05 39.6 12.3 139 411-568 14-152 (161)
224 PF03704 BTAD: Bacterial trans 95.6 0.11 2.3E-06 45.8 9.8 61 504-564 64-124 (146)
225 KOG4555 TPR repeat-containing 95.5 0.072 1.6E-06 44.0 7.5 90 478-567 51-146 (175)
226 PF12921 ATP13: Mitochondrial 95.2 0.056 1.2E-06 45.7 6.1 95 368-478 2-96 (126)
227 KOG1585 Protein required for f 95.2 1.7 3.7E-05 40.6 15.7 47 369-427 92-138 (308)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.1 2.3E-06 53.5 8.8 60 434-496 75-138 (453)
229 PF03704 BTAD: Bacterial trans 95.1 0.5 1.1E-05 41.5 12.3 70 402-472 65-138 (146)
230 PF13525 YfiO: Outer membrane 95.0 0.35 7.6E-06 45.3 11.8 160 378-556 15-198 (203)
231 PF13525 YfiO: Outer membrane 95.0 1.8 4E-05 40.4 16.6 56 304-362 12-71 (203)
232 COG5107 RNA14 Pre-mRNA 3'-end 95.0 5 0.00011 41.0 31.3 141 48-192 29-189 (660)
233 COG0457 NrfG FOG: TPR repeat [ 94.9 3.5 7.6E-05 38.8 21.4 194 337-534 63-268 (291)
234 KOG3941 Intermediate in Toll s 94.8 0.2 4.2E-06 47.5 9.0 111 80-190 51-185 (406)
235 PF00515 TPR_1: Tetratricopept 94.8 0.045 9.7E-07 34.0 3.5 33 503-535 2-34 (34)
236 PF12921 ATP13: Mitochondrial 94.8 0.28 6.1E-06 41.5 9.3 76 433-511 1-97 (126)
237 KOG2114 Vacuolar assembly/sort 94.7 8.8 0.00019 42.6 29.4 75 476-551 711-786 (933)
238 COG4235 Cytochrome c biogenesi 94.6 1 2.2E-05 43.6 13.6 102 433-536 155-261 (287)
239 PF07719 TPR_2: Tetratricopept 94.6 0.075 1.6E-06 32.9 4.2 33 503-535 2-34 (34)
240 KOG3941 Intermediate in Toll s 94.5 0.25 5.5E-06 46.7 8.9 99 387-486 53-174 (406)
241 COG5107 RNA14 Pre-mRNA 3'-end 94.3 7.3 0.00016 39.9 29.7 132 400-535 398-535 (660)
242 KOG1258 mRNA processing protei 94.2 9.3 0.0002 40.8 29.9 182 367-551 296-490 (577)
243 PF04053 Coatomer_WDAD: Coatom 94.1 0.36 7.9E-06 50.8 10.5 133 408-566 270-403 (443)
244 smart00299 CLH Clathrin heavy 94.1 2 4.3E-05 37.3 13.8 42 338-380 12-53 (140)
245 PF04053 Coatomer_WDAD: Coatom 93.9 1.4 3E-05 46.6 14.2 101 274-392 326-426 (443)
246 COG1729 Uncharacterized protei 93.9 0.24 5.1E-06 47.2 7.7 64 500-565 178-244 (262)
247 KOG0543 FKBP-type peptidyl-pro 93.8 0.58 1.3E-05 47.1 10.4 138 406-565 215-355 (397)
248 smart00299 CLH Clathrin heavy 93.8 3 6.4E-05 36.2 14.2 85 133-221 11-95 (140)
249 KOG2066 Vacuolar assembly/sort 93.7 13 0.00029 40.9 24.2 50 164-213 392-441 (846)
250 KOG1920 IkappaB kinase complex 93.6 12 0.00025 43.4 21.0 94 275-398 961-1056(1265)
251 PRK11906 transcriptional regul 93.4 0.81 1.7E-05 47.3 11.1 117 449-565 273-401 (458)
252 KOG1941 Acetylcholine receptor 93.2 0.7 1.5E-05 45.5 9.6 47 307-353 16-63 (518)
253 COG4785 NlpI Lipoprotein NlpI, 93.1 2.9 6.3E-05 38.3 12.6 177 382-567 79-268 (297)
254 PF13512 TPR_18: Tetratricopep 93.1 1 2.3E-05 38.6 9.5 58 480-537 20-82 (142)
255 COG3118 Thioredoxin domain-con 92.9 2 4.3E-05 41.6 12.1 120 443-565 143-265 (304)
256 PF04184 ST7: ST7 protein; In 92.7 6.1 0.00013 41.2 15.9 55 405-460 265-321 (539)
257 PF13512 TPR_18: Tetratricopep 92.7 2.7 5.9E-05 36.1 11.5 114 405-536 16-133 (142)
258 PF08631 SPO22: Meiosis protei 92.4 12 0.00026 37.0 20.9 65 370-434 123-192 (278)
259 PF13281 DUF4071: Domain of un 92.3 5.8 0.00013 40.5 15.2 72 68-139 146-227 (374)
260 COG3118 Thioredoxin domain-con 92.3 6 0.00013 38.4 14.4 152 408-562 143-299 (304)
261 COG1729 Uncharacterized protei 91.9 1.3 2.9E-05 42.3 9.6 61 476-536 184-249 (262)
262 PF04184 ST7: ST7 protein; In 91.9 2.3 5.1E-05 44.1 11.8 150 410-571 179-330 (539)
263 COG4105 ComL DNA uptake lipopr 91.9 12 0.00026 35.7 16.5 59 507-565 172-233 (254)
264 PRK11619 lytic murein transgly 91.8 25 0.00055 39.3 29.3 258 263-530 96-374 (644)
265 PF13181 TPR_8: Tetratricopept 91.6 0.26 5.6E-06 30.4 3.2 31 504-534 3-33 (34)
266 KOG2610 Uncharacterized conser 91.6 4.4 9.4E-05 39.8 12.6 111 382-496 117-235 (491)
267 PF10300 DUF3808: Protein of u 91.3 4.9 0.00011 43.1 14.4 80 347-428 247-334 (468)
268 PF10300 DUF3808: Protein of u 91.2 7.2 0.00016 41.8 15.5 159 404-565 193-376 (468)
269 PF13176 TPR_7: Tetratricopept 91.1 0.3 6.6E-06 30.7 3.1 28 504-531 1-28 (36)
270 KOG2610 Uncharacterized conser 90.9 1.4 3.1E-05 42.9 8.8 159 411-572 115-283 (491)
271 PRK09687 putative lyase; Provi 90.9 18 0.00039 35.8 23.9 60 264-323 35-98 (280)
272 PRK15331 chaperone protein Sic 90.8 6.5 0.00014 34.7 12.0 83 410-496 48-131 (165)
273 KOG4234 TPR repeat-containing 90.7 0.84 1.8E-05 41.1 6.5 88 479-566 104-198 (271)
274 PF13170 DUF4003: Protein of u 90.7 5.8 0.00013 39.4 13.3 63 416-479 160-226 (297)
275 KOG1920 IkappaB kinase complex 90.7 20 0.00044 41.6 18.4 111 375-496 915-1025(1265)
276 PF09205 DUF1955: Domain of un 90.4 9.9 0.00021 32.0 12.4 58 405-463 92-149 (161)
277 COG4105 ComL DNA uptake lipopr 89.9 18 0.0004 34.4 18.0 169 366-536 33-238 (254)
278 KOG1585 Protein required for f 89.7 16 0.00034 34.5 13.9 24 300-323 94-117 (308)
279 KOG4555 TPR repeat-containing 89.6 2 4.4E-05 35.8 7.4 87 443-532 52-145 (175)
280 COG3629 DnrI DNA-binding trans 89.1 2.4 5.2E-05 41.3 8.8 76 368-443 153-236 (280)
281 PF04097 Nic96: Nup93/Nic96; 88.8 8.4 0.00018 42.9 14.1 214 165-395 113-354 (613)
282 KOG1550 Extracellular protein 88.2 46 0.00099 36.7 19.6 211 348-565 308-538 (552)
283 PF13428 TPR_14: Tetratricopep 88.0 1.5 3.2E-05 29.0 4.9 33 401-435 3-35 (44)
284 PF13176 TPR_7: Tetratricopept 87.6 1.2 2.5E-05 28.0 3.9 25 402-426 2-26 (36)
285 PF02259 FAT: FAT domain; Int 87.4 37 0.0008 34.8 17.8 147 397-546 144-302 (352)
286 PF09613 HrpB1_HrpK: Bacterial 87.1 14 0.00031 32.5 11.4 87 444-533 20-108 (160)
287 COG3629 DnrI DNA-binding trans 87.0 2.8 6E-05 40.8 7.8 70 65-134 155-232 (280)
288 COG4649 Uncharacterized protei 86.6 9.7 0.00021 33.8 10.0 118 176-294 70-195 (221)
289 PF07035 Mic1: Colon cancer-as 86.5 17 0.00038 32.4 11.9 134 215-361 14-148 (167)
290 PRK09687 putative lyase; Provi 86.5 36 0.00077 33.7 27.2 75 366-445 204-278 (280)
291 PF00515 TPR_1: Tetratricopept 86.2 1.3 2.9E-05 27.1 3.6 31 401-433 3-33 (34)
292 PF10602 RPN7: 26S proteasome 86.2 15 0.00031 33.5 11.7 25 371-395 39-63 (177)
293 KOG4570 Uncharacterized conser 85.3 5.6 0.00012 38.7 8.7 100 363-463 59-164 (418)
294 COG4649 Uncharacterized protei 85.2 14 0.0003 32.8 10.3 50 74-123 69-123 (221)
295 PF07035 Mic1: Colon cancer-as 85.0 22 0.00047 31.8 11.8 131 16-155 15-146 (167)
296 KOG1941 Acetylcholine receptor 85.0 45 0.00098 33.5 15.3 162 298-459 84-271 (518)
297 PF09613 HrpB1_HrpK: Bacterial 84.9 2.1 4.5E-05 37.5 5.3 70 482-551 22-93 (160)
298 COG3947 Response regulator con 84.5 25 0.00054 34.1 12.4 57 508-564 285-341 (361)
299 PF10602 RPN7: 26S proteasome 84.4 9.6 0.00021 34.6 9.7 93 402-496 39-139 (177)
300 KOG2114 Vacuolar assembly/sort 84.2 79 0.0017 35.6 24.2 75 406-485 712-786 (933)
301 PF02259 FAT: FAT domain; Int 84.2 44 0.00095 34.2 16.1 65 501-565 145-213 (352)
302 PF00637 Clathrin: Region in C 84.1 0.91 2E-05 39.7 2.9 84 336-422 10-93 (143)
303 KOG4279 Serine/threonine prote 83.8 23 0.0005 38.9 13.2 182 299-535 203-399 (1226)
304 PF13170 DUF4003: Protein of u 83.8 49 0.0011 33.0 15.6 125 110-236 78-223 (297)
305 PF04097 Nic96: Nup93/Nic96; 83.3 83 0.0018 35.2 26.7 21 480-500 515-535 (613)
306 TIGR02561 HrpB1_HrpK type III 83.3 4.3 9.3E-05 35.0 6.3 52 515-566 23-74 (153)
307 KOG0403 Neoplastic transformat 83.3 60 0.0013 33.6 15.4 120 97-221 217-371 (645)
308 KOG1464 COP9 signalosome, subu 83.2 25 0.00055 33.5 11.8 231 279-515 40-317 (440)
309 KOG3364 Membrane protein invol 83.1 9 0.0002 32.4 7.9 60 506-565 36-100 (149)
310 PF07719 TPR_2: Tetratricopept 83.1 2.2 4.7E-05 26.0 3.6 30 402-433 4-33 (34)
311 PF14853 Fis1_TPR_C: Fis1 C-te 83.0 1.5 3.2E-05 30.5 2.9 33 507-539 6-38 (53)
312 TIGR02508 type_III_yscG type I 82.5 20 0.00044 28.5 9.1 61 376-439 47-107 (115)
313 KOG0276 Vesicle coat complex C 82.3 13 0.00028 39.7 10.5 148 380-561 598-746 (794)
314 KOG4648 Uncharacterized conser 82.1 1.7 3.6E-05 42.6 3.9 112 440-559 103-218 (536)
315 KOG0890 Protein kinase of the 81.2 1.7E+02 0.0037 37.4 29.0 279 268-566 1422-1732(2382)
316 PF13431 TPR_17: Tetratricopep 80.8 2.9 6.2E-05 25.9 3.4 24 263-286 10-33 (34)
317 smart00028 TPR Tetratricopepti 80.5 3.3 7.1E-05 24.1 3.8 31 504-534 3-33 (34)
318 TIGR02561 HrpB1_HrpK type III 80.3 39 0.00084 29.4 11.0 35 378-412 54-89 (153)
319 PF14853 Fis1_TPR_C: Fis1 C-te 80.0 6.7 0.00015 27.2 5.3 49 540-614 5-53 (53)
320 COG4785 NlpI Lipoprotein NlpI, 79.6 6.1 0.00013 36.3 6.3 90 444-536 75-167 (297)
321 COG1747 Uncharacterized N-term 79.4 89 0.0019 33.1 21.4 158 297-462 66-233 (711)
322 PRK10941 hypothetical protein; 79.2 5.1 0.00011 39.1 6.3 62 504-565 183-244 (269)
323 PF02284 COX5A: Cytochrome c o 79.1 15 0.00033 29.3 7.5 60 417-478 28-87 (108)
324 PF00637 Clathrin: Region in C 79.1 1.3 2.9E-05 38.6 2.1 86 133-221 11-96 (143)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 79.0 15 0.00032 29.1 7.3 62 415-478 23-84 (103)
326 PF13174 TPR_6: Tetratricopept 79.0 2.9 6.3E-05 25.2 3.1 27 508-534 6-32 (33)
327 PF10345 Cohesin_load: Cohesin 78.5 1.2E+02 0.0026 34.0 34.5 92 65-157 61-167 (608)
328 KOG0276 Vesicle coat complex C 78.4 25 0.00055 37.6 11.1 99 276-392 647-745 (794)
329 PF13374 TPR_10: Tetratricopep 77.1 4.3 9.2E-05 26.1 3.7 27 504-530 4-30 (42)
330 PRK15180 Vi polysaccharide bio 76.9 20 0.00042 37.2 9.6 121 410-535 300-424 (831)
331 KOG4570 Uncharacterized conser 76.9 7.6 0.00016 37.9 6.4 101 58-159 59-165 (418)
332 KOG2066 Vacuolar assembly/sort 76.6 1.3E+02 0.0029 33.6 20.9 75 64-141 393-467 (846)
333 KOG4648 Uncharacterized conser 76.2 6.8 0.00015 38.5 6.0 87 406-503 104-199 (536)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 76.1 16 0.00034 28.9 6.8 60 110-171 23-83 (103)
335 PF13181 TPR_8: Tetratricopept 75.8 3.9 8.6E-05 24.9 3.1 26 402-427 4-29 (34)
336 KOG1586 Protein required for f 75.3 75 0.0016 30.0 15.5 58 480-537 164-230 (288)
337 PF11207 DUF2989: Protein of u 75.0 9.4 0.0002 35.0 6.3 75 481-556 118-198 (203)
338 PF13374 TPR_10: Tetratricopep 74.2 6.1 0.00013 25.3 3.9 27 401-427 4-30 (42)
339 PRK15180 Vi polysaccharide bio 74.1 23 0.0005 36.7 9.3 129 380-511 301-434 (831)
340 PF06552 TOM20_plant: Plant sp 73.0 70 0.0015 28.9 10.9 32 415-448 51-83 (186)
341 COG2976 Uncharacterized protei 72.9 76 0.0017 29.0 13.3 114 417-535 70-192 (207)
342 KOG0376 Serine-threonine phosp 72.9 6.2 0.00013 40.9 5.1 85 480-564 14-100 (476)
343 PF07721 TPR_4: Tetratricopept 72.3 7 0.00015 22.3 3.3 21 474-494 5-25 (26)
344 PF09477 Type_III_YscG: Bacter 71.3 52 0.0011 26.7 8.7 87 348-438 21-107 (116)
345 TIGR02508 type_III_yscG type I 70.9 49 0.0011 26.4 8.4 76 246-325 21-96 (115)
346 KOG0545 Aryl-hydrocarbon recep 70.9 38 0.00082 32.1 9.1 88 478-565 186-293 (329)
347 PF11207 DUF2989: Protein of u 70.7 31 0.00068 31.7 8.5 73 416-489 123-197 (203)
348 PF02284 COX5A: Cytochrome c o 69.9 28 0.00062 27.9 7.0 59 112-171 28-86 (108)
349 PRK12798 chemotaxis protein; R 69.9 1.4E+02 0.0031 30.9 20.8 178 381-561 125-320 (421)
350 PF08631 SPO22: Meiosis protei 69.2 1.2E+02 0.0027 29.9 22.5 59 370-428 86-150 (278)
351 PF06552 TOM20_plant: Plant sp 69.2 9.3 0.0002 34.2 4.8 46 518-563 51-100 (186)
352 COG4455 ImpE Protein of avirul 67.9 12 0.00027 34.5 5.3 64 473-536 4-69 (273)
353 PF13934 ELYS: Nuclear pore co 67.8 86 0.0019 29.8 11.4 72 440-515 114-185 (226)
354 PF13762 MNE1: Mitochondrial s 67.1 54 0.0012 28.5 8.9 88 55-142 29-128 (145)
355 KOG1498 26S proteasome regulat 66.6 1.6E+02 0.0034 30.2 16.6 194 365-587 49-263 (439)
356 PF11768 DUF3312: Protein of u 66.2 61 0.0013 34.7 10.7 62 372-433 412-478 (545)
357 KOG1258 mRNA processing protei 65.6 2.1E+02 0.0045 31.1 32.3 130 63-193 45-180 (577)
358 KOG1308 Hsp70-interacting prot 64.3 4.8 0.0001 39.8 2.2 89 482-570 126-216 (377)
359 PF13762 MNE1: Mitochondrial s 64.2 78 0.0017 27.5 9.3 77 167-243 42-128 (145)
360 PRK13800 putative oxidoreducta 64.2 3E+02 0.0066 32.6 23.4 46 263-308 632-677 (897)
361 COG1747 Uncharacterized N-term 63.9 2.1E+02 0.0045 30.6 18.8 159 332-496 65-231 (711)
362 KOG4234 TPR repeat-containing 63.0 31 0.00067 31.5 6.8 20 306-325 104-123 (271)
363 PF09477 Type_III_YscG: Bacter 62.9 82 0.0018 25.6 9.1 78 244-325 20-97 (116)
364 TIGR03504 FimV_Cterm FimV C-te 60.7 19 0.0004 23.9 3.8 25 405-429 5-29 (44)
365 PF09670 Cas_Cas02710: CRISPR- 60.2 1.1E+02 0.0025 31.7 11.6 52 410-462 142-197 (379)
366 PF13929 mRNA_stabil: mRNA sta 59.6 1.8E+02 0.004 28.5 14.3 60 363-422 197-261 (292)
367 KOG0292 Vesicle coat complex C 59.3 20 0.00043 40.2 5.9 119 412-562 606-724 (1202)
368 PRK13342 recombination factor 59.2 2.3E+02 0.005 29.9 14.0 44 197-240 229-275 (413)
369 PRK13800 putative oxidoreducta 58.9 3.7E+02 0.0081 31.9 24.6 255 184-462 624-880 (897)
370 PF11838 ERAP1_C: ERAP1-like C 58.9 2E+02 0.0044 28.9 15.3 89 443-531 139-230 (324)
371 PF04910 Tcf25: Transcriptiona 58.6 85 0.0018 32.4 10.3 64 501-564 99-167 (360)
372 KOG1586 Protein required for f 58.5 1.7E+02 0.0036 27.8 12.2 11 143-153 28-38 (288)
373 PHA02875 ankyrin repeat protei 58.4 1.8E+02 0.004 30.5 13.4 13 217-229 183-195 (413)
374 PRK09169 hypothetical protein; 57.6 5.4E+02 0.012 33.4 39.4 434 127-560 160-690 (2316)
375 PF10366 Vps39_1: Vacuolar sor 57.4 42 0.00091 27.5 6.3 26 402-427 42-67 (108)
376 KOG4642 Chaperone-dependent E3 57.2 22 0.00049 33.4 5.1 79 486-564 26-106 (284)
377 PF09986 DUF2225: Uncharacteri 57.0 30 0.00065 32.6 6.2 65 502-566 118-195 (214)
378 KOG1550 Extracellular protein 56.7 2.2E+02 0.0047 31.5 13.7 109 349-461 228-355 (552)
379 PF07720 TPR_3: Tetratricopept 56.2 23 0.0005 22.2 3.6 30 505-534 4-35 (36)
380 PF10579 Rapsyn_N: Rapsyn N-te 55.9 37 0.00081 25.8 5.1 45 412-456 19-65 (80)
381 PRK11619 lytic murein transgly 55.0 3.6E+02 0.0077 30.5 37.3 403 47-472 82-513 (644)
382 PF07163 Pex26: Pex26 protein; 54.9 1.3E+02 0.0028 29.4 9.7 88 406-496 90-184 (309)
383 PF14561 TPR_20: Tetratricopep 54.5 14 0.0003 29.2 2.9 43 523-565 9-51 (90)
384 KOG4507 Uncharacterized conser 53.8 29 0.00063 37.1 5.8 95 446-543 619-717 (886)
385 TIGR03504 FimV_Cterm FimV C-te 52.8 24 0.00053 23.4 3.4 24 100-123 5-28 (44)
386 PF10579 Rapsyn_N: Rapsyn N-te 52.8 32 0.0007 26.1 4.4 47 446-492 18-65 (80)
387 KOG1464 COP9 signalosome, subu 52.5 1.9E+02 0.004 28.0 10.3 177 382-558 41-253 (440)
388 PF13929 mRNA_stabil: mRNA sta 52.2 1.9E+02 0.0042 28.4 10.7 120 97-219 134-262 (292)
389 KOG4642 Chaperone-dependent E3 51.5 2E+02 0.0044 27.4 10.2 76 383-460 25-104 (284)
390 PRK13342 recombination factor 51.4 2.8E+02 0.006 29.3 13.1 48 401-448 229-279 (413)
391 KOG3807 Predicted membrane pro 50.4 81 0.0017 31.2 7.8 54 405-460 281-337 (556)
392 PF11846 DUF3366: Domain of un 49.5 54 0.0012 30.2 6.7 35 499-533 141-175 (193)
393 PF12862 Apc5: Anaphase-promot 49.0 30 0.00065 27.5 4.2 54 512-565 8-70 (94)
394 smart00386 HAT HAT (Half-A-TPR 48.3 19 0.00041 21.2 2.4 28 516-543 1-28 (33)
395 PRK10941 hypothetical protein; 47.7 67 0.0015 31.4 7.1 65 475-539 186-252 (269)
396 PF11663 Toxin_YhaV: Toxin wit 47.6 22 0.00047 30.2 3.1 33 410-444 106-138 (140)
397 PF06957 COPI_C: Coatomer (COP 46.2 93 0.002 32.5 8.1 43 493-535 289-333 (422)
398 PF14669 Asp_Glu_race_2: Putat 46.0 2.4E+02 0.0052 25.8 12.1 94 393-497 101-208 (233)
399 cd08819 CARD_MDA5_2 Caspase ac 45.1 1.5E+02 0.0032 23.2 7.0 39 380-419 48-86 (88)
400 PF14863 Alkyl_sulf_dimr: Alky 44.7 53 0.0012 28.4 5.2 64 486-552 57-120 (141)
401 PF11846 DUF3366: Domain of un 43.6 67 0.0014 29.6 6.3 52 445-496 119-170 (193)
402 PRK10564 maltose regulon perip 43.3 44 0.00095 32.9 4.9 40 402-441 260-299 (303)
403 KOG3824 Huntingtin interacting 42.8 36 0.00078 33.2 4.2 59 482-540 128-188 (472)
404 COG4976 Predicted methyltransf 42.2 37 0.00081 31.8 4.0 57 479-535 4-62 (287)
405 PF08225 Antimicrobial19: Pseu 41.9 17 0.00036 19.3 1.1 12 666-677 10-21 (23)
406 TIGR01503 MthylAspMut_E methyl 41.7 1.8E+02 0.0039 30.6 9.2 57 417-476 152-217 (480)
407 PF14561 TPR_20: Tetratricopep 41.0 1.4E+02 0.0031 23.4 6.8 62 501-562 21-85 (90)
408 PF11848 DUF3368: Domain of un 40.7 84 0.0018 21.2 4.7 33 105-137 13-45 (48)
409 PHA02537 M terminase endonucle 40.6 2.4E+02 0.0051 26.9 9.2 22 410-431 94-115 (230)
410 PF10366 Vps39_1: Vacuolar sor 40.6 1.7E+02 0.0036 24.0 7.3 28 196-223 40-67 (108)
411 KOG2063 Vacuolar assembly/sort 40.3 6.6E+02 0.014 29.3 16.1 129 96-242 506-638 (877)
412 cd08819 CARD_MDA5_2 Caspase ac 40.0 1.7E+02 0.0036 22.9 6.6 66 47-114 21-86 (88)
413 COG2976 Uncharacterized protei 39.9 3.1E+02 0.0066 25.3 12.9 56 270-325 130-187 (207)
414 PF04910 Tcf25: Transcriptiona 39.7 4.5E+02 0.0096 27.2 17.4 96 433-533 99-224 (360)
415 KOG0890 Protein kinase of the 38.0 1.1E+03 0.023 31.1 29.3 154 138-303 1392-1552(2382)
416 COG4941 Predicted RNA polymera 38.0 4.3E+02 0.0093 26.7 10.5 120 414-537 271-400 (415)
417 KOG4507 Uncharacterized conser 37.7 1.2E+02 0.0027 32.6 7.4 133 431-566 568-706 (886)
418 PF07163 Pex26: Pex26 protein; 37.4 2.6E+02 0.0056 27.4 8.9 86 100-187 89-181 (309)
419 KOG4077 Cytochrome c oxidase, 37.1 2.1E+02 0.0045 24.2 7.1 60 417-478 67-126 (149)
420 PF12968 DUF3856: Domain of Un 36.9 2.5E+02 0.0055 23.5 7.5 91 7-119 21-125 (144)
421 PF15469 Sec5: Exocyst complex 36.6 3.3E+02 0.0071 24.7 10.1 22 441-462 93-114 (182)
422 PF14689 SPOB_a: Sensor_kinase 36.3 73 0.0016 22.9 4.1 26 436-461 25-50 (62)
423 cd00280 TRFH Telomeric Repeat 36.1 1.2E+02 0.0026 27.5 6.1 30 508-538 117-146 (200)
424 smart00638 LPD_N Lipoprotein N 35.8 6.5E+02 0.014 27.9 18.2 269 47-343 294-573 (574)
425 PF15161 Neuropep_like: Neurop 35.7 24 0.00052 24.2 1.3 18 660-678 11-28 (65)
426 PF11848 DUF3368: Domain of un 34.5 1.5E+02 0.0032 20.1 5.1 33 410-442 13-45 (48)
427 PF11663 Toxin_YhaV: Toxin wit 34.3 54 0.0012 27.8 3.5 33 206-240 106-138 (140)
428 KOG3824 Huntingtin interacting 34.2 46 0.001 32.5 3.5 51 512-562 126-176 (472)
429 COG5108 RPO41 Mitochondrial DN 33.3 5.4E+02 0.012 28.6 11.2 46 338-383 33-80 (1117)
430 COG2178 Predicted RNA-binding 33.3 3.3E+02 0.0072 25.0 8.4 50 379-428 40-98 (204)
431 KOG2659 LisH motif-containing 33.0 2.7E+02 0.0058 26.3 8.1 54 441-495 71-128 (228)
432 KOG2471 TPR repeat-containing 32.6 4.8E+02 0.01 27.8 10.4 138 340-481 213-380 (696)
433 COG2912 Uncharacterized conser 32.5 1.1E+02 0.0023 29.8 5.7 60 506-565 185-244 (269)
434 PF11768 DUF3312: Protein of u 32.4 2.1E+02 0.0046 30.9 8.2 57 168-224 412-473 (545)
435 PF04190 DUF410: Protein of un 32.3 4.8E+02 0.01 25.4 16.8 158 76-259 3-170 (260)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 3.1E+02 0.0067 23.2 8.5 27 264-290 97-123 (126)
437 PF10345 Cohesin_load: Cohesin 32.1 7.7E+02 0.017 27.7 35.1 170 51-223 18-207 (608)
438 PF14689 SPOB_a: Sensor_kinase 32.0 68 0.0015 23.1 3.4 26 402-427 26-51 (62)
439 PRK10564 maltose regulon perip 31.7 75 0.0016 31.3 4.5 36 97-132 260-295 (303)
440 PF04190 DUF410: Protein of un 31.4 5E+02 0.011 25.3 18.7 52 264-315 88-139 (260)
441 KOG2422 Uncharacterized conser 31.3 3.1E+02 0.0068 29.8 9.1 102 444-547 248-388 (665)
442 KOG4077 Cytochrome c oxidase, 29.8 2.8E+02 0.0061 23.4 6.8 45 215-259 69-113 (149)
443 PF02607 B12-binding_2: B12 bi 29.5 1.1E+02 0.0023 23.1 4.4 39 410-448 12-50 (79)
444 KOG0686 COP9 signalosome, subu 29.1 6.8E+02 0.015 26.1 14.1 58 268-325 152-215 (466)
445 TIGR02270 conserved hypothetic 28.4 7.2E+02 0.016 26.2 24.1 46 162-207 98-143 (410)
446 smart00777 Mad3_BUB1_I Mad3/BU 27.7 2.3E+02 0.005 24.0 6.3 37 82-118 82-123 (125)
447 COG1488 PncB Nicotinic acid ph 27.5 83 0.0018 32.9 4.4 84 601-688 277-365 (405)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 27.4 3.8E+02 0.0082 22.6 8.7 42 417-458 81-123 (126)
449 cd08326 CARD_CASP9 Caspase act 26.9 2.1E+02 0.0045 22.2 5.4 41 276-316 40-80 (84)
450 COG0735 Fur Fe2+/Zn2+ uptake r 26.7 3.2E+02 0.0069 23.8 7.3 60 424-485 11-70 (145)
451 PF12968 DUF3856: Domain of Un 26.6 3.9E+02 0.0084 22.5 7.0 20 543-562 107-126 (144)
452 KOG2034 Vacuolar sorting prote 26.1 1.1E+03 0.023 27.4 21.3 49 270-323 508-556 (911)
453 KOG1524 WD40 repeat-containing 25.7 2.9E+02 0.0064 29.5 7.7 58 471-531 574-631 (737)
454 PF00244 14-3-3: 14-3-3 protei 25.5 6E+02 0.013 24.3 10.3 23 303-325 7-29 (236)
455 PF12796 Ank_2: Ankyrin repeat 25.4 2.2E+02 0.0048 21.7 5.7 14 74-87 5-18 (89)
456 KOG1308 Hsp70-interacting prot 25.4 21 0.00046 35.5 -0.3 99 513-627 125-226 (377)
457 KOG3807 Predicted membrane pro 25.4 5.1E+02 0.011 25.9 8.8 56 372-427 279-339 (556)
458 PF10255 Paf67: RNA polymerase 25.2 3.8E+02 0.0083 28.0 8.6 56 405-460 128-190 (404)
459 PRK14015 pepN aminopeptidase N 25.1 1.2E+03 0.026 27.6 13.6 58 502-559 783-847 (875)
460 PF13934 ELYS: Nuclear pore co 24.8 6.1E+02 0.013 24.1 12.1 113 380-502 90-204 (226)
461 cd08326 CARD_CASP9 Caspase act 24.4 1.9E+02 0.0042 22.4 4.9 62 47-112 18-79 (84)
462 cd00280 TRFH Telomeric Repeat 24.4 3.4E+02 0.0073 24.8 6.8 31 477-507 118-148 (200)
463 KOG0687 26S proteasome regulat 24.4 7.4E+02 0.016 25.0 10.6 91 370-462 106-209 (393)
464 KOG0292 Vesicle coat complex C 24.0 1E+03 0.022 27.7 11.6 129 378-530 653-781 (1202)
465 PRK11639 zinc uptake transcrip 23.8 3E+02 0.0064 24.7 6.8 61 425-487 17-77 (169)
466 PF12862 Apc5: Anaphase-promot 23.8 3.6E+02 0.0079 21.2 7.8 53 410-462 9-69 (94)
467 COG5108 RPO41 Mitochondrial DN 23.8 2.8E+02 0.006 30.6 7.3 72 404-479 33-112 (1117)
468 COG0735 Fur Fe2+/Zn2+ uptake r 23.4 4E+02 0.0086 23.2 7.3 45 200-244 25-69 (145)
469 TIGR02710 CRISPR-associated pr 23.4 8.5E+02 0.018 25.3 11.4 52 408-459 139-196 (380)
470 PRK11639 zinc uptake transcrip 23.0 3.7E+02 0.0079 24.1 7.2 49 198-246 28-76 (169)
471 PF00244 14-3-3: 14-3-3 protei 23.0 6.7E+02 0.015 24.0 10.2 162 405-567 7-200 (236)
472 KOG1811 Predicted Zn2+-binding 22.8 1E+03 0.022 26.1 12.3 98 471-571 557-655 (1141)
473 KOG1350 F0F1-type ATP synthase 22.3 71 0.0015 31.3 2.5 72 603-697 236-307 (521)
474 PF07575 Nucleopor_Nup85: Nup8 22.2 1.3E+02 0.0028 33.4 4.9 140 96-239 374-539 (566)
475 COG4941 Predicted RNA polymera 22.1 5.7E+02 0.012 25.9 8.5 80 414-496 311-391 (415)
476 PF04090 RNA_pol_I_TF: RNA pol 22.0 6.4E+02 0.014 23.4 8.4 110 436-546 43-188 (199)
477 PHA03100 ankyrin repeat protei 21.4 1E+03 0.022 25.4 15.2 136 49-192 49-201 (480)
478 KOG0551 Hsp90 co-chaperone CNS 21.2 2.4E+02 0.0052 28.3 5.8 81 478-558 89-175 (390)
479 PF08967 DUF1884: Domain of un 21.1 1.1E+02 0.0025 23.2 2.8 26 596-621 8-33 (85)
480 KOG4279 Serine/threonine prote 21.0 2.8E+02 0.0061 31.1 6.8 27 664-690 490-516 (1226)
481 PF11817 Foie-gras_1: Foie gra 20.9 2.8E+02 0.006 26.8 6.5 17 203-219 18-34 (247)
482 PF12069 DUF3549: Protein of u 20.9 8.9E+02 0.019 24.6 12.7 86 374-462 172-258 (340)
483 COG3043 NapB Nitrate reductase 20.5 65 0.0014 27.6 1.6 18 656-673 80-97 (155)
484 KOG3507 DNA-directed RNA polym 20.3 31 0.00067 24.1 -0.2 12 661-672 19-30 (62)
485 KOG0991 Replication factor C, 20.3 7.7E+02 0.017 23.6 10.2 39 396-435 236-274 (333)
486 COG0790 FOG: TPR repeat, SEL1 20.3 8.2E+02 0.018 24.0 17.4 83 345-430 53-144 (292)
487 PF04034 DUF367: Domain of unk 20.2 5.4E+02 0.012 21.8 7.6 57 471-527 67-124 (127)
488 PF10255 Paf67: RNA polymerase 20.0 4.5E+02 0.0099 27.5 7.9 58 370-427 124-192 (404)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-139 Score=1199.05 Aligned_cols=697 Identities=43% Similarity=0.774 Sum_probs=687.0
Q ss_pred CccchhhcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 005268 1 MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77 (705)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g 77 (705)
||++|++.|++++|+++|++ |...|+.||.+||+++|++|+..++ +.++|..+.+.|+.||+.++|+||.+|+++|
T Consensus 158 li~~~~~~g~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 58899999999999999999 8889999999999999999988776 9999999999999999999999999999999
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHH
Q 005268 78 LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 78 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (705)
++++|.++|++|++||+++||+||.+|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 005268 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237 (705)
Q Consensus 158 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 237 (705)
.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHH
Q 005268 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317 (705)
Q Consensus 238 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 317 (705)
.+|++.|+++.|.++|+.+.+.| +.++..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005268 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397 (705)
Q Consensus 318 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 397 (705)
.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+
T Consensus 476 ~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 476 IFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 99999985 5999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHH
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 477 (705)
|.++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997789999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
++|+|.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhccc
Q 005268 558 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSH 637 (705)
Q Consensus 558 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~ 637 (705)
+++.|+++|++|+||+|||++++++|.|.+||..||+.++||..+++|..+|++.||+||+..++ ++++++|+..|++|
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~h 791 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGH 791 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888 55888999999999
Q ss_pred chhhHHhcccccCCCCCceEEeeccccccchhHHHHHHhhhhCceEEEecCCccccccccccCCCC
Q 005268 638 SERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 703 (705)
Q Consensus 638 ~~~la~~~~~~~~~~~~~~~~~~n~~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 703 (705)
|||||+|||||+||+|+||||+||||||+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 792 se~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 792 SERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred cHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-126 Score=1065.50 Aligned_cols=613 Identities=35% Similarity=0.673 Sum_probs=605.6
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 005268 91 VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 169 (705)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 169 (705)
.++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhH
Q 005268 170 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249 (705)
Q Consensus 170 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 249 (705)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCC
Q 005268 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329 (705)
Q Consensus 250 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (705)
+++|..+.+.| +.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+ .|+
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGV 321 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHH
Q 005268 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409 (705)
Q Consensus 330 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 409 (705)
.||..||++++.+|++.|+++.|.++|..+.+.|+.||..++|+|+++|+|+|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 489 (705)
+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCcc
Q 005268 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 569 (705)
Q Consensus 490 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 569 (705)
.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhcccchhhHHhccccc
Q 005268 570 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 649 (705)
Q Consensus 570 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 649 (705)
.||+||+++++++|.|.+||..||+..++|.++.++..+|++.||.||+.++++|+++++|+..|++||||||+|||||+
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeccccccchhHHHHHHhhhhCceEEEecCCccccccccccCCCCCC
Q 005268 650 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 705 (705)
Q Consensus 650 ~~~~~~~~~~~n~~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 705 (705)
||+|+||||+||||+|+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-86 Score=761.29 Aligned_cols=676 Identities=26% Similarity=0.414 Sum_probs=604.2
Q ss_pred CccchhhcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 005268 1 MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 77 (705)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g 77 (705)
+|.+|++.|++++|+.+|+. |...|+.|+..+|..++++|.+.+. |.++|..+.+.|..++..++|+|+.+|+++|
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLES-MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 46789999999999999999 9999999999999999999987665 9999999999999999999999999999999
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHH
Q 005268 78 LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 78 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (705)
+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.++|..+++
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 005268 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 237 (705)
Q Consensus 158 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 237 (705)
.|+.||..++|+|+.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHH
Q 005268 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 317 (705)
Q Consensus 238 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 317 (705)
.+|+..|+.+.|+++|..+.+.| +.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005268 318 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397 (705)
Q Consensus 318 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 397 (705)
++|++|.+ .|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++
T Consensus 375 ~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 375 ETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHH
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 477 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 477 (705)
|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.++.+|++.|.++.+.+++..+.+. |+.++..++++|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi 531 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALL 531 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHH
Confidence 999999999999999999999999999986 59999999999999999999999999999999876 9999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCcchhhhhhhhhhhcCCcchH
Q 005268 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV--DSENVGYYVLMSNIYANVGKWEGV 555 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 555 (705)
++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHH
Confidence 9999999999999999999 799999999999999999999999999999875 46 668899999999999999999
Q ss_pred HHHHHHHH-hCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhh
Q 005268 556 DEVRSLAR-DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHIL 634 (705)
Q Consensus 556 ~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~ 634 (705)
.++|+.|. +.|+.|+...... .+......+ .+++..+.+++++..||...|-.-+..+...+-+
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G-------~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAG-------KLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCC-------CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999 6787665321000 000011111 1344555556668999987766555554321111
Q ss_pred cccchhhH-HhcccccCCCCCceEEeeccccccchhHHHHHHhhhhCceEEE-------ecCCccccccccccC
Q 005268 635 TSHSERLA-IAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIV-------RDSNRFHHFKDGICS 700 (705)
Q Consensus 635 ~~~~~~la-~~~~~~~~~~~~~~~~~~n~~~~~~~h~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~~s 700 (705)
. -.|+.| ..+.+.|...+.-+.+..-....|+-.++.+....|..+.+-- --.+..|-|..|--|
T Consensus 674 e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 674 E-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred H-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 0 012222 2244555544444333333457889999999999888773321 113567888766544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-70 Score=614.09 Aligned_cols=462 Identities=29% Similarity=0.500 Sum_probs=444.7
Q ss_pred CccchhhcCCchHHHHHHHHHhHhC-CCCCCccchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 005268 1 MISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRF 76 (705)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~ 76 (705)
+|.+|++.|++++|+++|+. |... +..||..+|++++.+|++.+. +.++|..|.+.|+.||..++|.|+++|+++
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~-m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 93 QIEKLVACGRHREALELFEI-LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 36789999999999999999 7655 478999999999999988776 899999999999999999999999999999
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHH
Q 005268 77 GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156 (705)
Q Consensus 77 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 156 (705)
|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.++|..+.
T Consensus 172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 005268 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 236 (705)
Q Consensus 157 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 236 (705)
+.|+.||..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHH
Q 005268 237 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316 (705)
Q Consensus 237 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 316 (705)
+.+|++.|.++.|+++|..+.+.| +++|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005268 317 IEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395 (705)
Q Consensus 317 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 395 (705)
+++|++|.+ .|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+
T Consensus 411 ~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 411 VEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 999999999 99999999999999999999999999999999986 6999999999999999999999999999999998
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC
Q 005268 396 -RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468 (705)
Q Consensus 396 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 468 (705)
.|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+. |+.+
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 78888999999999999999999999999976 5675 568999999999999999999999999876 7754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-67 Score=587.83 Aligned_cols=503 Identities=19% Similarity=0.249 Sum_probs=466.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHh
Q 005268 60 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS-----WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134 (705)
Q Consensus 60 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (705)
.++...|..++..++++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 5678889999999999999999999999999766554 55667789999999999999999974 99999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccC----CCCeehHHHHHHHHHcCCC
Q 005268 135 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM----ERDVVSWNSIIAAYEQSND 210 (705)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 210 (705)
++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999997 4899999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH--hcCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 005268 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLGIINSACAV 288 (705)
Q Consensus 211 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 288 (705)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ .| +.||..+|++|+++|+++|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 45 899999999999999999999999999
Q ss_pred HhcCCC----CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCC
Q 005268 289 FEGLPV----KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364 (705)
Q Consensus 289 f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 364 (705)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999974 4679999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005268 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440 (705)
Q Consensus 365 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 440 (705)
.||..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC-
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RAG-------------------HLGMAHNFIQNM- 496 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~- 496 (705)
+.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999876 99999999999997643 332 246799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchhhhhhhhhhhcCCc-chHHHHHHHHHhCCCccCCc
Q 005268 497 --PVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGKW-EGVDEVRSLARDRGLKKTPG 572 (705)
Q Consensus 497 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~ 572 (705)
.+.||..+|++++.++.+.+..+.+..+++.+.. -.+.+..+|..|++.+ |++ ++|..+++.|.+.|+.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 5889999999999887788888888888877653 2355778899999987 443 58999999999999987753
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-64 Score=569.94 Aligned_cols=502 Identities=15% Similarity=0.190 Sum_probs=470.7
Q ss_pred CCCCCccchHHHHHHhcCCch---HHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHH
Q 005268 26 GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMI 101 (705)
Q Consensus 26 g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 101 (705)
...++...|..++..+.+.+. |.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667778888888755554 9999999999995 578888999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 005268 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMR 181 (705)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 181 (705)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC----CCeehHHHHHHHHHcCCChhhHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 005268 182 HALRVFDQMME----RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ--AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255 (705)
Q Consensus 182 ~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 255 (705)
+|.++|+.|.+ ||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|+++.|.++++.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999954 8999999999999999999999999999976 68999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC
Q 005268 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331 (705)
Q Consensus 256 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 331 (705)
|.+.| ++|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+ .|+.|
T Consensus 605 M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~p 682 (1060)
T PLN03218 605 IHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKL 682 (1060)
T ss_pred HHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCC
Confidence 99999 99999999999999999999999999999997 56999999999999999999999999999999 99999
Q ss_pred CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHHHH
Q 005268 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIIS 407 (705)
Q Consensus 332 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~ 407 (705)
|..+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|++++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 689999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHhHHhh
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----S-------------------GLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~m~~~~ 464 (705)
+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~- 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA- 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-
Confidence 999999999999999999999999999999999876542 1 2246799999999987
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 005268 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP---VRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 465 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
|+.||..+|+.++..+.+.+..+.+..+++.|. ..|+..+|++|+.++.+. .++|..++++|.+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999884 556789999999998433 368999999998865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-31 Score=314.84 Aligned_cols=546 Identities=12% Similarity=0.072 Sum_probs=386.3
Q ss_pred chhhcCCchHHHHHHHHHhHhCCCCCCc-cchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 005268 4 VYVRCGRLSEAVDCFYQFTLTSGLRPDF-YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 79 (705)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~ 79 (705)
.+.+.|++++|...|.. .... .|+. ..+..+...+...+. +.+.+..+.+.. +.+...++.+...|.+.|++
T Consensus 304 ~~~~~g~~~~A~~~~~~-~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQ-ILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHcCCHHHHHHHHHH-HHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence 35678889999998888 4332 2332 233333333333333 777777776654 45677788888888888999
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHH
Q 005268 80 NVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV 156 (705)
Q Consensus 80 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 156 (705)
++|.+.|+++.. .+...|..+...+...|++++|++.|+++.+... .+......++..+.+.|++++|..++..+.
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999888887652 3455677777888888888888888888876532 123445556667777888888888888777
Q ss_pred HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhH
Q 005268 157 KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233 (705)
Q Consensus 157 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 233 (705)
+.. +++..+++.+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++
T Consensus 459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 653 44667777788888888888888888877643 244566677777788888888888888877653 3345566
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHc
Q 005268 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQN 310 (705)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 310 (705)
..+...+...|+.+++...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+. ..+...|..+...|...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 777777777788888888887777664 5566677777788888888888888877664 33566777788888888
Q ss_pred CChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005268 311 GLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389 (705)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 389 (705)
|++++|+..|+++.+ ..| +...+..+...+...|++++|...+..+.+.. +.+...+..++..+.+.|++++|..
T Consensus 615 ~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 615 GDLNKAVSSFKKLLA---LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888887766 334 34456667777777788888888887777653 3456677777777778888888888
Q ss_pred HHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC
Q 005268 390 LFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466 (705)
Q Consensus 390 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 466 (705)
+++.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~ 766 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--H 766 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 7777762 34445777777777778888888888877773 455566667777777777777777777777653 2
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 467 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
+.+...+..+...|.+.|+.++|.+.|+++ . .+++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 335567777777777777777777777776 2 23456677777777777777 66777777777777777777777777
Q ss_pred hhhhcCCcchHHHHHHHHHhCCC
Q 005268 545 IYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 545 ~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
+|...|++++|.++++++.+.+.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777777776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-31 Score=311.48 Aligned_cols=545 Identities=12% Similarity=0.049 Sum_probs=450.5
Q ss_pred hhhcCCchHHHHHHHHHhHhCCCCCCccchHHHH-HHh---cCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChh
Q 005268 5 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVL-KAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80 (705)
Q Consensus 5 ~~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll-~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 80 (705)
+.+.|++++|++.|+. .... .|+.......+ ..+ ++...|.+.+..+++.. +.+...+..+...+.+.|+++
T Consensus 271 ~~~~~~~~~A~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 271 DFQKKNYEDARETLQD-ALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHhcCHHHHHHHHHH-HHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 4568999999999998 4433 34432211111 122 23333888888887764 456777888889999999999
Q ss_pred HHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHH
Q 005268 81 VARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 81 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (705)
+|...++.+.. .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999988753 456678999999999999999999999998753 33556677778888899999999999999988
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHH
Q 005268 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 234 (705)
Q Consensus 158 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 234 (705)
..+. .......++..|.+.|++++|..+++.+.. ++..+|+.+...|...|++++|.+.|+++.+.. +.+...+.
T Consensus 426 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 426 LDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred hCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 7643 345667788899999999999999998865 356789999999999999999999999997753 23445677
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcC
Q 005268 235 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNG 311 (705)
Q Consensus 235 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 311 (705)
.+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+.++|..+|+++. ..+...+..++..|...|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 77888889999999999999998875 6778899999999999999999999998874 345677888999999999
Q ss_pred ChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005268 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 391 (705)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 391 (705)
++++|..+++++.+ . .+.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|
T Consensus 582 ~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 582 QLKKALAILNEAAD-A-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999986 2 23356778888999999999999999999998764 446778888999999999999999999
Q ss_pred hhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC
Q 005268 392 YQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468 (705)
Q Consensus 392 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 468 (705)
+++. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~ 734 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---AP 734 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CC
Confidence 9876 4456679999999999999999999999999864 455677888888999999999999999988754 56
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
+...+..++..+.+.|++++|.+.++++ . .+.+..++..+...|...|+.++|...++++++..|+++..+..+++++
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6678888999999999999999999887 2 3346778889999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhCC
Q 005268 547 ANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~~ 566 (705)
...|+ ++|..+++++.+..
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhC
Confidence 99999 88999999887753
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=7.1e-34 Score=234.41 Aligned_cols=106 Identities=64% Similarity=1.027 Sum_probs=98.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcccCCcccccccchhhh--------hhhhcccchhhHH
Q 005268 572 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK--------EHILTSHSERLAI 643 (705)
Q Consensus 572 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 643 (705)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899887 9999999999987 566778889999999999998888766 5688999999999
Q ss_pred hcccccCCCCCceEEeecc-ccccchhHHHHHHhhhhCceEEEecCCcccccc
Q 005268 644 AFGIISSPPKSPIQIFKNL-RVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 695 (705)
Q Consensus 644 ~~~~~~~~~~~~~~~~~n~-~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~ 695 (705)
||||+++ ||+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.5e-22 Score=237.11 Aligned_cols=539 Identities=12% Similarity=0.084 Sum_probs=400.7
Q ss_pred chhhcCCchHHHHHHHHHhHhCCCCCCccchHH-HHHHh----cCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 005268 4 VYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPP-VLKAC----RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGL 78 (705)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~-ll~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~ 78 (705)
.+.+.|++++|+..|+. ... +.+|+. .+.. ..... .+...|.+.+..+++.. +.+...+..+...+.+.|+
T Consensus 121 ll~~~g~~~eA~~~~~~-~l~-~~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 121 LLATTGRTEEALASYDK-LFN-GAPPEL-DLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHhCCCHHHHHHHHHH-Hcc-CCCCCh-HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 36778999999999999 433 223332 2111 12221 22223888888888774 4467788899999999999
Q ss_pred hhHHHHHhccCCCCCc------chH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhH
Q 005268 79 ANVARKLFDDMPVRDS------GSW-----------------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135 (705)
Q Consensus 79 ~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 135 (705)
.++|...|+++..... ..| ...+..+-.......|...+.++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999998753211 111 1112222222234455566655544322333221 223
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--CCe---ehHHHH---------
Q 005268 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDV---VSWNSI--------- 201 (705)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l--------- 201 (705)
...+...|++++|...++.+++..+ .+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4456788999999999999998753 3778899999999999999999999988754 321 123222
Q ss_pred ---HHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 005268 202 ---IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278 (705)
Q Consensus 202 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~ 278 (705)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-
Confidence 345678999999999999998863 2344566778888999999999999999999874 566777778888875
Q ss_pred cCCHHHHHHHHhcCCCCC------------hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhc
Q 005268 279 LGIINSACAVFEGLPVKD------------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSH 345 (705)
Q Consensus 279 ~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~ 345 (705)
.++.++|...++.++... ...+..+...+...|++++|++.|++..+ ..|+ ...+..+...+..
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 467899999998876432 12355567778899999999999999988 6775 4456677888999
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-------------hHHHHHHHHHhc
Q 005268 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-------------PWNAIISCHGIH 412 (705)
Q Consensus 346 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~ 412 (705)
.|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.++..... .+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999998753 334555555666678899999999999998743211 123456778899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHN 491 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 491 (705)
|+.++|+++++. .+++...+..+...+...|++++|++.|+...+. .| +...+..++.+|...|++++|++
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999872 3445567777888999999999999999998864 45 56788999999999999999999
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 492 FIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 492 ~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
.++... ..|+ ..++..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++...
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999874 4454 567788888999999999999999999998775543 45567999999999999999998886
Q ss_pred h
Q 005268 564 D 564 (705)
Q Consensus 564 ~ 564 (705)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 3
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.7e-22 Score=238.58 Aligned_cols=386 Identities=11% Similarity=0.053 Sum_probs=300.6
Q ss_pred HHHHHHccCCHHHHHHHHhccCC--C-CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCh-hhH------------
Q 005268 170 LINMYAKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL-LTL------------ 233 (705)
Q Consensus 170 Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------------ 233 (705)
+...+...|++++|+..|++..+ | +...+..|...|.+.|++++|+..|++..+....... ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34567788999999999988755 3 5678888999999999999999999998775322211 111
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHc
Q 005268 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQN 310 (705)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 310 (705)
......+...|++++|...+..+++.. +.+...+..+...|.+.|++++|++.|++.. ..+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 112345678899999999999999884 6677788889999999999999999999876 335566777777774 4
Q ss_pred CChhHHHHHHHhhhhcCCCCC--------CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005268 311 GLASEAIEVFQMMEECNEINP--------NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382 (705)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 382 (705)
++.++|+..++.+.. ....+ ....+..+...+...|++++|.+.++.+++.. +.+..++..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSA-SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 678999998877654 11000 01123345566778899999999999998874 335677888999999999
Q ss_pred CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCcH
Q 005268 383 RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---------TFVSLLTACSHSGLV 450 (705)
Q Consensus 383 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~ 450 (705)
++++|...|+++. ..+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999875 3344456666666778999999999998865432222221 233456678899999
Q ss_pred HHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005268 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 451 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 528 (705)
++|.++++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..++..+...|+.++|+..++++
T Consensus 590 ~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998861 2445667788999999999999999999988 3455 4778999999999999999999999999
Q ss_pred hccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 529 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 529 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.+..|+++..+..++.++...|++++|.++++.+....
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999988754
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-21 Score=195.10 Aligned_cols=446 Identities=15% Similarity=0.150 Sum_probs=364.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 176 (705)
-..|..-..+.|++.+|.+.-...-+.+ +.+..+...+-..+.+..+++...+.-...++.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666678899999988755443332 2233344444445566666666555554555543 3356788999999999
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCChhhHHHH
Q 005268 177 FGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSV 252 (705)
Q Consensus 177 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~i 252 (705)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+ +-......|.+.++..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998866 2567899999999999999999999998876 4566554433 33344567889999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCC
Q 005268 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329 (705)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (705)
+...++.. +.=..+|+.|...+-..|++..|+..|++...-| ...|-.|...|...+.+++|+..+.+... .
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---l 281 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---L 281 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---c
Confidence 98888764 4556789999999999999999999999876443 46788899999999999999999999876 7
Q ss_pred CCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHH
Q 005268 330 NPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAI 405 (705)
Q Consensus 330 ~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~l 405 (705)
.|+ .+.+..+...|...|.++.|+..+++.++.. +.-...|+.|..++...|++.+|.+.+.+.. .....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 785 5678888888999999999999999998863 2346789999999999999999999999876 3445678999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhc
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRA 483 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 483 (705)
...|...|..++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.. .+.|+ ...|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999998 78875 589999999999999999999999887 67886 46899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 484 GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 484 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
|+.++|.+.+.+. .++|. ....+.|.+.|...|++.+|+..|+.+++++|+.+.+|-.++..+.-..+|.+=.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 9999999999887 57776 56889999999999999999999999999999999999999888877888877433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=9.3e-20 Score=205.55 Aligned_cols=535 Identities=9% Similarity=-0.012 Sum_probs=317.6
Q ss_pred cCCchHHHHHHHHHhHhCCCCCCc-cchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHH
Q 005268 8 CGRLSEAVDCFYQFTLTSGLRPDF-YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVAR 83 (705)
Q Consensus 8 ~g~~~~A~~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~ 83 (705)
.|++++|+..|++.+. +.|+. ..+..+.+.+...+. |.......++.. +.|...+..+ ..+ ++.++|.
T Consensus 57 ~Gd~~~A~~~l~~Al~---~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 57 NNDEATAIREFEYIHQ---QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 3666666666666322 23433 223334444444433 555555444442 2233333333 222 6666666
Q ss_pred HHhccCCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCChhhHHhH-HHHhhcCCChHHHHHH
Q 005268 84 KLFDDMPV--R-DSGSWNAMISG--------YCQSGNAVEALDILDEMRLEGVSMDPITVASI-LPVCARSDNILSGLLI 151 (705)
Q Consensus 84 ~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~ 151 (705)
.+++++.. | +...+..+... |.+.+...+++ + .......|+..+.... ...+...++++++..+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 66666542 2 22233333332 44443333333 3 2222223334433333 5566666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHc-cCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCC-CC
Q 005268 152 HLYIVKHGLEFNLFVSNNLINMYAK-FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ-PD 229 (705)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 229 (705)
+..+.+.++. +......|..+|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|..+++++...-.. |+
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 6666666532 33334445555555 244 55555555443445556666666666666666666666665432111 22
Q ss_pred hhhHHHH------------------------------HHHHHcc-----------------------------CChhhHH
Q 005268 230 LLTLVSL------------------------------TSIVAQL-----------------------------NDCRNSR 250 (705)
Q Consensus 230 ~~t~~~l------------------------------l~a~~~~-----------------------------~~~~~a~ 250 (705)
..++.-. +..+... +...++.
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 2222111 1111112 2233333
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHHcCC---hhHHHHH--
Q 005268 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-K-----DVISWNTLITGYAQNGL---ASEAIEV-- 319 (705)
Q Consensus 251 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~-- 319 (705)
+....+.+. .+.+....--+.-...+.|+.++|.++|++.-+ + +...-+-++..|.+.+. ..++..+
T Consensus 363 ~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 363 RLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 333333333 133444444455556677888888888887654 1 22234466677766655 3333333
Q ss_pred --------------------HHhhhhcCCCCCC---cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 320 --------------------FQMMEECNEINPN---QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376 (705)
Q Consensus 320 --------------------~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 376 (705)
........+..|+ ...+..+..++.. +..++|...+....... |+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 1111111122233 2333444444444 78888888777776653 45444444455
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHH
Q 005268 377 MYGKCGRIDDAMSLFYQVPR--SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 453 (705)
.+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++. .|+.. .+..+.......|++++|
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHH
Confidence 55689999999999987763 44455777788888999999999999999885 35443 333444455567999999
Q ss_pred HHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 454 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
...++...+ +.|+...|..+..++.+.|+.++|+..+++. ...|+ ...++.+..++...|+.++|+..+++++++
T Consensus 596 l~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999988874 4677888899999999999999999999887 45564 667888888999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 532 DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999887653
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=8.9e-20 Score=205.70 Aligned_cols=543 Identities=12% Similarity=0.037 Sum_probs=390.6
Q ss_pred ccchhhcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHHHHHHHHH--------H
Q 005268 2 ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM--------Y 73 (705)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------y 73 (705)
...|.+.|++++|+..+++ .. ...|+...+..++........+..+++.+.+.. +.+..++..+... |
T Consensus 85 A~~yl~~g~~~~A~~~~~k-Av--~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLED-QL--KRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHHCCCHHHHHHHHHH-HH--hcCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhh
Confidence 4678999999999999998 33 346666666666666655555889999998875 3445566666665 8
Q ss_pred HcCCChhHHHHHhccCCCCC--cch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc-CCChHHHH
Q 005268 74 CRFGLANVARKLFDDMPVRD--SGS-WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR-SDNILSGL 149 (705)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~ 149 (705)
.+.+...+|++ .+...|+ ... .-.+...|.+.|++++|++++.++.+.+. .+..-...+-.++.. .++ +.+.
T Consensus 161 ~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 161 AQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred hhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHH
Confidence 88877777777 3333343 333 44448999999999999999999999763 334445555556666 355 7777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC-----CCeehHH-------------------------
Q 005268 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-----RDVVSWN------------------------- 199 (705)
Q Consensus 150 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~------------------------- 199 (705)
.++.. .+..+..+...+.+.|.+.|+.++|.+++.+++. |+..+|-
T Consensus 237 al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 237 ALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 77443 3446888999999999999999999999998853 2111111
Q ss_pred -----HHHHHHHcCCChhhHHHHHHH--------HHHCCCC-------------------C-ChhhHHHHHHHHHccCCh
Q 005268 200 -----SIIAAYEQSNDPITAHGFFTT--------MQQAGIQ-------------------P-DLLTLVSLTSIVAQLNDC 246 (705)
Q Consensus 200 -----~li~~~~~~g~~~~A~~~~~~--------m~~~g~~-------------------p-~~~t~~~ll~a~~~~~~~ 246 (705)
.++..+.++++++.+.++..- +.-.+.. | +......+--.....|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence 124455556666655444210 0000110 1 111222222234567888
Q ss_pred hhHHHHHHHHHH-hcCCCchhHHHHHHHHHHHhcCC---HHHHHHH-------------------------HhcCC---C
Q 005268 247 RNSRSVHGFIMR-RGWFMEDVIIGNAVVDMYAKLGI---INSACAV-------------------------FEGLP---V 294 (705)
Q Consensus 247 ~~a~~i~~~~~~-~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------f~~~~---~ 294 (705)
++|.+++..... .+.-..+..+.+.|+..|.+.+. ..++..+ +.... .
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 999999888766 22122355667788899988876 3333222 11111 1
Q ss_pred C--ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHH
Q 005268 295 K--DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372 (705)
Q Consensus 295 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 372 (705)
. +...|..+...+.. ++.++|+..|.+... ..|+......+..++...|++++|...++.+... +|+...+.
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 2 55677888877776 899999998888877 5577655444455556899999999999987654 34444566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS---CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 449 (705)
.+...+.+.|++++|...|++....+...++.... .....|++++|+..|++.++ +.|+...+..+..++.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCC
Confidence 77788899999999999999887555444443333 33345999999999999998 67888889999999999999
Q ss_pred HHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 005268 450 VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASD 526 (705)
Q Consensus 450 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 526 (705)
+++|...++.... ..| +...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++
T Consensus 625 ~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 625 VPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999885 466 4567888889999999999999999987 4556 47789999999999999999999999
Q ss_pred HHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
++++++|++.......+++..+..+++.|.+-++..-...+
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999887777665544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=4.4e-20 Score=184.41 Aligned_cols=420 Identities=11% Similarity=0.129 Sum_probs=338.7
Q ss_pred hHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCC---CeehHHHHHHHHHcCCC
Q 005268 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSND 210 (705)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 210 (705)
.+..-.-+.|++.+|++--..+-... +.+....-.+-..|....+++....--....+. -..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888877655443332 222222223335666666666544332222222 34589999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 005268 211 PITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289 (705)
Q Consensus 211 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f 289 (705)
.++|+.+++.|.+. +|+ ...|..+..++...|+.+.+.+.+...++.. |....+.+-+....-..|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999884 554 4588899999999999999999999998864 444455566777777889999999988
Q ss_pred hcCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc-ccccchhHHhhccCchHHHHHHHHHHHHhCCC
Q 005268 290 EGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLC 365 (705)
Q Consensus 290 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 365 (705)
.+..+. =.+.|+.|...+-.+|+...|++.|++..+ +.|+- ..|..+...|...+.++.|...+.++.... +
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 765433 347899999999999999999999999988 88863 467777788888888888888888777642 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 005268 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLL 441 (705)
Q Consensus 366 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 441 (705)
....++..+...|-..|.++-|...+++....+ ...|+.|..++-..|+..+|.+.|.+.+. +.|+. ...+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 356677778888999999999999999887433 34599999999999999999999999999 67876 5889999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNM 518 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 518 (705)
..+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+...|...|++
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999998876 45665 467899999999999999999999887 78888 56899999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
+.|.+.+.+++..+|.-..++..|+.+|-.+|+..+|..-++...+...
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999998876543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=5.7e-18 Score=188.07 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=189.2
Q ss_pred cCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 310 NGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
.+++++|++.|++..+.....|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 35677788888777761123342 3345555566667788888888888777653 223556777788888888999998
Q ss_pred HHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 389 SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 389 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
..|++.. +.+...|..+...+...|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8888765 34456688888889999999999999999988 4565 456777778888999999999999988753
Q ss_pred CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 465 GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA-S-------IWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 465 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
.| +...|..+..+|...|++++|++.|++. ...|+. . .++..+..+...|++++|+..++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34 4678888999999999999999999886 344421 1 1222223344469999999999999999999
Q ss_pred CcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+...+..++.+|...|++++|.+.++...+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9888999999999999999999999988764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.9e-19 Score=187.45 Aligned_cols=297 Identities=15% Similarity=0.159 Sum_probs=175.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcc
Q 005268 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN---LFVSNNLINMYAKF 177 (705)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~ 177 (705)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..|...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777777777777653 22344666677777777777777777777766432221 24567788888888
Q ss_pred CCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHH
Q 005268 178 GMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHG 254 (705)
Q Consensus 178 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 254 (705)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++..
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------
Confidence 888888888888865 355678888888888888888888888887653221110
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC
Q 005268 255 FIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331 (705)
Q Consensus 255 ~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 331 (705)
.....+..+...+.+.|++++|...|+++. +.+...+..+...|.+.|++++|.+.|+++.+ ..|
T Consensus 178 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p 245 (389)
T PRK11788 178 ---------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDP 245 (389)
T ss_pred ---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCh
Confidence 011123445556666677777776666653 22345666667777777777777777777765 223
Q ss_pred C--cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHH
Q 005268 332 N--QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIIS 407 (705)
Q Consensus 332 ~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 407 (705)
+ ..++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 2 2233444445555555555555555544432 333333445555555555555555554433 234444444444
Q ss_pred HHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 005268 408 CHGI---HGQGDKALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 408 ~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 435 (705)
.+.. .|+.++++.+|++|.+.+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4332 334555555555555544444443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.1e-18 Score=184.13 Aligned_cols=290 Identities=12% Similarity=0.093 Sum_probs=212.1
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC---cccccchhHHhhccCc
Q 005268 275 MYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN---QGTYVSILPAYSHVGA 348 (705)
Q Consensus 275 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~ 348 (705)
.+...|++++|...|+++.. .+..+|..+...+...|++++|..+++.+.. .+..++ ..++..+...+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566777777777776652 2345666777777777777777777777765 321111 1345556666777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------hHHHHHHHHHhcCChHHHHH
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV--------PWNAIISCHGIHGQGDKALN 420 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~ 420 (705)
++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+.. .|..+...+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 345667778888888888888888888877532211 24567777888899999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005268 421 FFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQNM- 496 (705)
Q Consensus 421 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~- 496 (705)
.|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998884 454 456777778888999999999999988754 343 356788889999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh---cCCcchHHHHHHHHHhCCCccCCc
Q 005268 497 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN---VGKWEGVDEVRSLARDRGLKKTPG 572 (705)
Q Consensus 497 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 572 (705)
...|+...+..++..+.+.|++++|...++++++..|+++. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777788889999999999999999999999997754 4444444332 568999999999999999988886
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=8.9e-17 Score=177.87 Aligned_cols=367 Identities=10% Similarity=-0.005 Sum_probs=277.7
Q ss_pred ccCCHHHHHHHHhccCCC------CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhH
Q 005268 176 KFGMMRHALRVFDQMMER------DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 249 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 249 (705)
+..+++.---.|..-++. +.......+..+.+.|++++|+.+++........+. ..+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 445555555555555441 223344566778888889999988888877643333 2344444556678888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 005268 250 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 326 (705)
Q Consensus 250 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (705)
...+..+.+.. |.+...+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~- 172 (656)
T PRK15174 96 LQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ- 172 (656)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-
Confidence 88888888874 6777888889999999999999999998765 34667888899999999999999999998876
Q ss_pred CCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHH
Q 005268 327 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 403 (705)
Q Consensus 327 ~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~ 403 (705)
..|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++.. ..+...+.
T Consensus 173 --~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 --EVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred --hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4454433332334577889999999999988776433444555666778889999999999998876 34455688
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHH
Q 005268 404 AIISCHGIHGQGDK----ALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMV 477 (705)
Q Consensus 404 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 477 (705)
.+...|.+.|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...++...+. .|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 89999999999986 8999999998 56664 57888888999999999999999998754 554 45677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchH
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVRPDASIW-GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 555 (705)
.+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...|++|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea 393 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG 393 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence 9999999999999999887 356765443 4456778999999999999999999999764 2444566
Q ss_pred HHHHHHHHhC
Q 005268 556 DEVRSLARDR 565 (705)
Q Consensus 556 ~~~~~~m~~~ 565 (705)
...+....+.
T Consensus 394 ~~~~~~~~~~ 403 (656)
T PRK15174 394 LLALDGQISA 403 (656)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9e-16 Score=173.64 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=84.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 005268 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180 (705)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 180 (705)
+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+..++...|+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 334445566666666666655311 2233345555555555566666666665555542 22334444555555555555
Q ss_pred HHHHHHHhccCC--C-CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 005268 181 RHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257 (705)
Q Consensus 181 ~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 257 (705)
++|...+++..+ | +.. |..+...+...|+.++|+..++++.+
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---------------------------------- 144 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---------------------------------- 144 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------
Confidence 555555555432 1 222 44455555555555555555555544
Q ss_pred HhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 005268 258 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294 (705)
Q Consensus 258 ~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 294 (705)
. .|.+..++..+...+.+.|..+.|...++....
T Consensus 145 -~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 145 -R--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred -h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 3 355555666677777777888888888876664
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=3.2e-16 Score=177.30 Aligned_cols=385 Identities=10% Similarity=0.034 Sum_probs=258.6
Q ss_pred HHHHHHccCCHHHHHHHHhccCC-C--CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCC
Q 005268 170 LINMYAKFGMMRHALRVFDQMME-R--DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLND 245 (705)
Q Consensus 170 Li~~y~~~g~~~~A~~~f~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 245 (705)
.+......|+.++|++++..... . +...+..+...+.+.|++++|.++|++..+. .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33344444444444444444432 1 1122444444444555555555555544432 222 2223333344444555
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHh
Q 005268 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQM 322 (705)
Q Consensus 246 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (705)
.++|...++.+++. .|.+.. +..+..++...|+.++|...++++. +.+...+..+...+...+..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 55555555555444 356666 8888999999999999999998876 33666777788888899999999999886
Q ss_pred hhhcCCCCCCcc------cccchhHHh-----hccCch---HHHHHHHHHHHHh-CCCCchh-H-HHH---HHHHHHhcC
Q 005268 323 MEECNEINPNQG------TYVSILPAY-----SHVGAL---RQGIKIHARVIKN-CLCFDVF-V-ATC---LVDMYGKCG 382 (705)
Q Consensus 323 m~~~~~~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-g~~~~~~-~-~~~---li~~y~k~g 382 (705)
... .|+.. .....+... ...+.+ +.|...++.+++. ...|+.. . ... .+.++...|
T Consensus 176 ~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 176 ANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 653 33310 011111111 122233 6778888888764 2223221 1 111 123445679
Q ss_pred CHHHHHHHHhhCCCCCc--ch--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHH
Q 005268 383 RIDDAMSLFYQVPRSSS--VP--WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-----HITFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 383 ~~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a 453 (705)
++++|+..|+.+.+.+. .. -..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 99999999999985431 11 122577899999999999999998874 332 23456667788999999999
Q ss_pred HHHHHHhHHhhC----------CcCC---cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 005268 454 QRYFHMMQEEFG----------IKPH---LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 518 (705)
Q Consensus 454 ~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 518 (705)
.++++.+..... -.|+ ...+..++.++...|++++|++.++++ ...| +...+..+...+...|+.
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 999999875411 0122 124566788999999999999999987 3344 577899999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999875
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.8e-16 Score=171.55 Aligned_cols=418 Identities=12% Similarity=0.010 Sum_probs=281.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 96 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175 (705)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 175 (705)
.+......+.+.|++++|+..|++..+ ..|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 355667777888888888888888775 35677777777777888888888888888887764 235567777888888
Q ss_pred ccCCHHHHHHHHhccCCCC---eehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 005268 176 KFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 252 (705)
..|++++|..-|......+ ......++..+.. ..+........+.. +++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 8888888877765443211 1111111111111 12222233322221 111112221111 1111111111110
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHH------HhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChhHHHHHH
Q 005268 253 HGFIMRRGWFMEDVIIGNAVVDMY------AKLGIINSACAVFEGLPV------KDVISWNTLITGYAQNGLASEAIEVF 320 (705)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 320 (705)
+.... ..+......++..+ ...+++++|.+.|+.... .+...|+.+...+...|++++|+..|
T Consensus 280 ~~~~~-----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 280 LEDSN-----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhccc-----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11000 00111111111111 234678888888876653 24567888888888999999999999
Q ss_pred HhhhhcCCCCCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---C
Q 005268 321 QMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---R 396 (705)
Q Consensus 321 ~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~ 396 (705)
++..+ +.|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++.. +
T Consensus 355 ~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 355 SKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 99887 6675 3466777778888999999999999988763 4467788889999999999999999999876 3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-ch--
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KH-- 472 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~-- 472 (705)
.+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|.+.|+...+ +.|+. ..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~ 505 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYM 505 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccc
Confidence 34556888889999999999999999999884 555 56888888899999999999999998874 34431 11
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 473 -----YGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 473 -----~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+...
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 122223344579999999999886 55565 55789999999999999999999999999877543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=6e-15 Score=163.53 Aligned_cols=435 Identities=12% Similarity=0.043 Sum_probs=274.2
Q ss_pred HHHcCCChhHHHHHhccCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH---HhHHHHhhcCCCh
Q 005268 72 MYCRFGLANVARKLFDDMPVRDSG---SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV---ASILPVCARSDNI 145 (705)
Q Consensus 72 ~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~ 145 (705)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 456889999999999888743322 23477888888899999999998887 3433332 2234466777999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHc--CCChhhHHHHHHHHHH
Q 005268 146 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQ 223 (705)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 223 (705)
+.|.++++.+++..+. +..++..|+..|...++.++|+..++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999887644 466777888888888999999999888876544433334444444 4555568888888877
Q ss_pred CCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 005268 224 AGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302 (705)
Q Consensus 224 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 302 (705)
. .|+ ...+.....++.+.|-...|.++...-... +.+....+ | +.+.|.+..+.-..++
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~--l--------~~~~~a~~vr~a~~~~------ 257 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQ--L--------ERDAAAEQVRMAVLPT------ 257 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHH--H--------HHHHHHHHHhhccccc------
Confidence 5 233 333444455555555554444433321110 11111000 0 0011111111000000
Q ss_pred HHHHHHHcCC---hhHHHHHHHhhhhcCCCCCCccc-----ccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 005268 303 LITGYAQNGL---ASEAIEVFQMMEECNEINPNQGT-----YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374 (705)
Q Consensus 303 li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~~t-----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 374 (705)
-....+ .+.|+.-++.+....+-.|.... ..-.+-++...++..++++.++.+...+.+....+-.++
T Consensus 258 ----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 258 ----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000111 23444444444431222232211 113345666778888888888888877766556677788
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPRSS---------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV-----------RP-- 432 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p-- 432 (705)
.++|...+++++|..+|+++...+ ......|.-+|...+++++|..+++++.+.-. .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 888888888888888888775322 11135677788888888888888888887311 12
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 005268 433 DHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGAL 508 (705)
Q Consensus 433 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 508 (705)
|-. .+..++..+.-.|++.+|.+.++.+... .| |......+.+++...|++.+|++.++.. ...|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 222 3344455677888888888888888643 44 6678888888888888888888888766 34565 4456667
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
+.+....+++++|..+.+.+.+..|+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 777778888888888888888888887643
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.1e-15 Score=155.09 Aligned_cols=550 Identities=12% Similarity=0.047 Sum_probs=368.6
Q ss_pred cCCchHHHHHHHHHhH-hCCCCCCccchHH-HHHHhcCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC---ChhHH
Q 005268 8 CGRLSEAVDCFYQFTL-TSGLRPDFYTFPP-VLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG---LANVA 82 (705)
Q Consensus 8 ~g~~~~A~~~~~~~m~-~~g~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g---~~~~A 82 (705)
.|++..|+.+|...+. .+...||+..-.. -+--|.....|...|.+.++... .++.++-.|--+-.... .+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHH
Confidence 4667777777776322 2334455543211 01112222236666666665531 12222222221111222 23444
Q ss_pred HHHhccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHhHHHHhhcCCChHHHHHHHHHHHH
Q 005268 83 RKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVS--MDPITVASILPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 83 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (705)
..++...- ..|++..|.|.+-|.-.|+++.++.+...+...... .-...|-.+.+++-..|+++.|...|-+..+
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 44444332 357888999999999999999999999988764311 1234588889999999999999999988887
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--C-CeehHHHHHHHHHcCC----ChhhHHHHHHHHHHCCCCCCh
Q 005268 158 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSN----DPITAHGFFTTMQQAGIQPDL 230 (705)
Q Consensus 158 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~ 230 (705)
.....-+..+-.|..+|.+.|+++.|...|+.+.. | +..+...|...|...+ ..+.|..++.+..+.- +.|.
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 65333244556788999999999999999999865 3 3445555666666664 4466666666655542 3445
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHH----HHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Chh-
Q 005268 231 LTLVSLTSIVAQLNDCRNSRSVHGF----IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-------DVI- 298 (705)
Q Consensus 231 ~t~~~ll~a~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~- 298 (705)
..|..+-..+....- ......+.. +...+ -+..+.+.|.+...+...|.++.|...|++.... |..
T Consensus 415 ~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDP-WASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 566666555544433 333555544 34455 4577888999999999999999999999865422 221
Q ss_pred -----HHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc-cchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHH
Q 005268 299 -----SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372 (705)
Q Consensus 299 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 372 (705)
+--.+...+-..++++.|.+.|..+.+ ..|+.+.- .-++...-..+...+|...+..+.... ..++.+++
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk---ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILK---EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 122234455566789999999999988 55654432 222212223466778888888877642 45666677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCCHH
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHG------------IHGQGDKALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~g~~p~~~ 435 (705)
-+.+.|.+...+..|.+-|..+. .+|..+.-+|.+.|. ..+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 77778888888888888666554 234444444444333 2346788999999999842 33556
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRPDASIWGALLGA 511 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~ 511 (705)
.-+.+.-.++..|++.+|+.+|....+.. .....+|-.+.+.|..+|++..|+++|+..- .+.+..+...|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 77788888999999999999999998752 3345588889999999999999999998761 23467788999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh-------------------hhcCCcchHHHHHHHHHhCCCc
Q 005268 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-------------------ANVGKWEGVDEVRSLARDRGLK 568 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-------------------~~~g~~~~a~~~~~~m~~~~~~ 568 (705)
+...|.+.+|.+.+..+..+.|.|+.....++-+. ...+..++|.++|..+.+.+-+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999987766555333 3334577888888888876543
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=8e-16 Score=170.30 Aligned_cols=326 Identities=10% Similarity=-0.030 Sum_probs=267.9
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHH
Q 005268 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITG 306 (705)
Q Consensus 230 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 306 (705)
..-...++..+.+.|+.+.|..++..++... +.+......++......|++++|...|+++. +.+...|..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3345567778889999999999999998885 6666667777777888999999999999875 3466788999999
Q ss_pred HHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 005268 307 YAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385 (705)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 385 (705)
+.+.|++++|+..|++... +.|+ ...+..+...+...|++++|...+..+......+ ...+..+ ..+.+.|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHH
Confidence 9999999999999999988 6775 4566778888999999999999999887764333 3333333 3478899999
Q ss_pred HHHHHHhhCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHH----HHHH
Q 005268 386 DAMSLFYQVPRSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSE----GQRY 456 (705)
Q Consensus 386 ~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~ 456 (705)
+|...++.+.+.+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999876432 223455567888999999999999999985 455 4577778889999999986 7899
Q ss_pred HHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 457 FHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 457 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
|+...+ +.| +...+..+..++.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++.+|
T Consensus 273 ~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 273 WRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 988875 356 4568889999999999999999999887 34555 56788889999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
+++..+..++.++...|++++|...++...+...
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8877777788899999999999999999887644
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=3e-14 Score=157.99 Aligned_cols=441 Identities=9% Similarity=0.042 Sum_probs=310.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 174 (705)
|...| ...+.|++++|++.|++..+. .|+. ..+ .++..+...|+.++|...++..+.. -.........+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 44333 467899999999999999875 4554 233 7777788889999999999888721 122233333446688
Q ss_pred HccCCHHHHHHHHhccCCC---CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHH
Q 005268 175 AKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251 (705)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 251 (705)
...|++++|..+|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++...+.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8889999999999998663 3456667788889999999999999998764 5555555444444444555655888
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCC
Q 005268 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330 (705)
Q Consensus 252 i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 330 (705)
.++.+++.. |.+...+..++....+.|-...|.++..+-+.- +...+.-+ +.+.|.+..+. +..
T Consensus 191 ~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~-----a~~ 255 (822)
T PRK14574 191 ASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRM-----AVL 255 (822)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhh-----ccc
Confidence 888888874 777788888888888888888888887765421 11111111 11222222211 111
Q ss_pred CCcccccchhHHhhccCchHHHHHHHHHHHHh-CCCC-chhH-HHHH---HHHHHhcCCHHHHHHHHhhCCCCC--cch-
Q 005268 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCF-DVFV-ATCL---VDMYGKCGRIDDAMSLFYQVPRSS--SVP- 401 (705)
Q Consensus 331 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~-~~~~-~~~l---i~~y~k~g~~~~A~~~~~~~~~~~--~~~- 401 (705)
|+..- - .+.--.+.+..-++.+... +-.| .... ..+. +-++.+.|+..++.+.|+.+.... +..
T Consensus 256 ~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 21100 0 0111234555555555542 2112 2122 2233 446678899999999999999443 233
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC----------
Q 005268 402 -WNAIISCHGIHGQGDKALNFFRQMLDEGV-----RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG---------- 465 (705)
Q Consensus 402 -~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---------- 465 (705)
-.++..+|...+++++|+.+|+++....- .++......|.-++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 46688999999999999999999977431 22333457788899999999999999999986311
Q ss_pred CcCCc---chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 466 IKPHL---KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 466 ~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
-.|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|+..+|+..++.+..++|++.....
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 01222 23455678889999999999999998 2334 6889999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 541 LMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 541 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.++..+...|+|++|..+.+...+.-
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999998887653
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.8e-14 Score=150.11 Aligned_cols=541 Identities=13% Similarity=0.094 Sum_probs=374.1
Q ss_pred chHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCc-----hHHHHHHHHHHh--CCCCCHHHHHHHHHHHHcCCChhHHH
Q 005268 11 LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV-----DGKKIHCSVLKL--GFEWDVFVAASLLHMYCRFGLANVAR 83 (705)
Q Consensus 11 ~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~~~~~~~~~--g~~~~~~~~~~ll~~y~~~g~~~~A~ 83 (705)
++.|...|..+... .|+.. ...+-+||...+ .+..+|..++.. ...||+.+.- -..+.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~---sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ---SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh---CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHH
Confidence 47777778773333 23322 223455654333 277777776554 3456655432 24566889999999
Q ss_pred HHhccCCCCCcchHHHHHHHH---Hh---CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHH
Q 005268 84 KLFDDMPVRDSGSWNAMISGY---CQ---SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~---~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (705)
..|.+..+-|+..-++++... .. ...+..++.++...-... +-|+...+.|..-+.-.|+++.+..+...+++
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999888765554444444321 12 223455666665554432 34667778888888889999999999888887
Q ss_pred hCCCC--chhHHHHHHHHHHccCCHHHHHHHHhccCC--CC--eehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-h
Q 005268 158 HGLEF--NLFVSNNLINMYAKFGMMRHALRVFDQMME--RD--VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-L 230 (705)
Q Consensus 158 ~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 230 (705)
..... -...|--+..+|-..|++++|...|-+-.. +| +..+--|...|.+.|+.+.+...|...... .|| .
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~ 376 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNY 376 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchH
Confidence 65221 123466688899999999999999877654 33 334556778899999999999999998775 344 4
Q ss_pred hhHHHHHHHHHccC----ChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCH------HHHHHHHhc-CCCCChhH
Q 005268 231 LTLVSLTSIVAQLN----DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII------NSACAVFEG-LPVKDVIS 299 (705)
Q Consensus 231 ~t~~~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~------~~A~~~f~~-~~~~~~~~ 299 (705)
.|...+...|+..+ ..+.|..+.....+. .+.|...|-.+..+|....-+ ..|..++.. +....+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 46666666666554 456666677766666 367788888888877765443 344433332 23456778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhhhcC---CCCCCcc------cccchhHHhhccCchHHHHHHHHHHHHhCCCCchhH
Q 005268 300 WNTLITGYAQNGLASEAIEVFQMMEECN---EINPNQG------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 370 (705)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~~------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 370 (705)
.|.+...+...|++++|...|..... . ...+|.. +--.+....-..++.+.|.+.+..+++.. +.-+..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~-~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALG-KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhh-hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHH
Confidence 89999999999999999999998876 3 2333432 11223444456778999999999998863 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSH 446 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~ 446 (705)
|-.+..+....+...+|...+..+. ..++..|+-+...|.....+..|-.-|+.....- ..+|..+..+|.+.|..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 4444434444467788888888776 5566678888888988888888888777666532 23677777777776543
Q ss_pred ------------cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 005268 447 ------------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGAC 512 (705)
Q Consensus 447 ------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~ 512 (705)
.+..+.|+++|....+. -+.|...-+.+.-.++..|++.+|.++|.+.. ...+..+|-.+...|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHH
Confidence 34567788888877642 23366777888899999999999999998873 223456899999999
Q ss_pred HhcCChhHHHHHHHHHhccC--CCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 513 RIHGNMELGAVASDRLFEVD--SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
...|++..|+++|+..+... .+++.....|+.++.+.|+|.+|.+.........
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999988743 4466777889999999999999999888776653
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.3e-13 Score=129.38 Aligned_cols=433 Identities=13% Similarity=0.134 Sum_probs=261.9
Q ss_pred hcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCc--h----HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChh
Q 005268 7 RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLV--D----GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLAN 80 (705)
Q Consensus 7 ~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~----~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~ 80 (705)
.+|...++.-+|+. |+..|+..+...-..|++..+... . -.+.|-.|.+.| +.+..+| |.|.+.
T Consensus 127 S~~EvKDs~ilY~~-m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 127 SSREVKDSCILYER-MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred hhcccchhHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 45666666666666 666666555544444444321111 1 122222333333 1222222 344444
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCC
Q 005268 81 VARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGL 160 (705)
Q Consensus 81 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 160 (705)
+ -+|+. ..+...++.+||.++++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++.+..+|+....
T Consensus 197 d--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM 269 (625)
T ss_pred H--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc
Confidence 3 34444 4455578999999999999999999999999988889999999999987653 344889999999999
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHH----hcc----CCCCeehHHHHHHHHHcCCChhh-HHHHHHHHHHC----CCC
Q 005268 161 EFNLFVSNNLINMYAKFGMMRHALRVF----DQM----MERDVVSWNSIIAAYEQSNDPIT-AHGFFTTMQQA----GIQ 227 (705)
Q Consensus 161 ~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~ 227 (705)
.||..++|+++.+.++.|+++.|++.+ .+| .+|...+|..+|..+.+.+++.+ |..++.+.... ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999999998876655 444 34788899999998888888754 44444444332 222
Q ss_pred ---C-ChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 005268 228 ---P-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL 303 (705)
Q Consensus 228 ---p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 303 (705)
| |...|.+.+..|.+..+.+.|.++++.+..... |...|.. .....-|..+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------~~~ig~~-----------~~~~fYyr~~ 404 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------WKFIGPD-----------QHRNFYYRKF 404 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------hhhcChH-----------HHHHHHHHHH
Confidence 3 344677788888888888888888876643320 0000100 0012334555
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 383 (705)
....++....+.-+..|+.|.- .-.-|+..+...+++|....+.++-..+++..++..|.........-+...+++..
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k- 482 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK- 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-
Confidence 6666677777777777777776 66777777777788877777777777777777777664333222222222222111
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 384 IDDAMSLFYQVPRSSSVPWNAIISCHGI--HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 384 ~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
+.++...-..+-...++ ..-.+.....-.+|.+....| ...+.++..+.+.|..++|.++|..+.
T Consensus 483 -----------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 483 -----------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred -----------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 01111111111111111 001111222233445433333 344445555677788888888887775
Q ss_pred HhhCCcCCcchHHHHH---HHHHhcCCHHHHHHHHHhC
Q 005268 462 EEFGIKPHLKHYGCMV---DLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 462 ~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~~ 496 (705)
+.+.-.|.....++|+ +.-.+....-.|...++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5544455555555444 4445666777777777666
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.2e-13 Score=133.74 Aligned_cols=444 Identities=13% Similarity=0.105 Sum_probs=304.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH-hHHHHhhcCCChHHHHHHHHHHHHhCCCCchh----HHHHHHHHH
Q 005268 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVA-SILPVCARSDNILSGLLIHLYIVKHGLEFNLF----VSNNLINMY 174 (705)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~Li~~y 174 (705)
|.+-|..+....+|+..|+-..+...-||.-.+. .+...+.+..++..|..++...+..-+..+.. ..+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4456667788899999999988877777765432 34455677788999999998888764433332 344444567
Q ss_pred HccCCHHHHHHHHhccCC--CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChh------------hHHHHHH--
Q 005268 175 AKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL------------TLVSLTS-- 238 (705)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------t~~~ll~-- 238 (705)
.+.|++++|..-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||.. ..+..+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998755 676665556666777899999999999997654433332 2222221
Q ss_pred ---HHHccCC--hhhHHHHHHHHHHhcCCCchh---------------------HHHHHHHHHHHhcCCHHHHHHHHhcC
Q 005268 239 ---IVAQLND--CRNSRSVHGFIMRRGWFMEDV---------------------IIGNAVVDMYAKLGIINSACAVFEGL 292 (705)
Q Consensus 239 ---a~~~~~~--~~~a~~i~~~~~~~g~~~~~~---------------------~~~~~li~~y~~~g~~~~A~~~f~~~ 292 (705)
-..+.+. .+.+...-..++..- +.|+- ..--.-..-|.+.|+++.|.+++.-.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 111111111111100 11110 00011233577899999999988877
Q ss_pred CCCChhHHHH----H-HHHHHHc-CChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCC
Q 005268 293 PVKDVISWNT----L-ITGYAQN-GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366 (705)
Q Consensus 293 ~~~~~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 366 (705)
..+|..+-++ | +.-|.+. .++..|.+.-+....... -|....+.-.+.....|+++.|.+.+.+++...-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 6665433222 2 2223333 356666666555543111 122222223333445799999999999998865444
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
....||. .-.+-+.|++++|++.|-++. ..+......+.+.|....++.+|++++.+.... ++.|+.....|...
T Consensus 524 ~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 4444443 335678899999999997765 566666777888999999999999999888773 44456788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhhCC-cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCChhH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGI-KPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACR-IHGNMEL 520 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-~~g~~~~ 520 (705)
|-+.|+-.+|.+.+..- |.. +-+.++...|..-|....-+++|+.+|++. -+.|+.+-|..++..|. +.|+++.
T Consensus 602 ydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999987643 344 447888888999999999999999999998 47899999999998774 6799999
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
|..+|+.....-|.+....-.|..++...|.
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999888888888888775
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=3.9e-12 Score=129.06 Aligned_cols=496 Identities=11% Similarity=0.044 Sum_probs=386.2
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHH
Q 005268 60 EWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136 (705)
Q Consensus 60 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (705)
+.++..|-+.+. .-..++|+-++.+..+ .+...|. +|++..-++.|..++.+.++. ++.+...|.+..
T Consensus 377 P~sv~LWKaAVe----lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 377 PRSVRLWKAAVE----LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred CchHHHHHHHHh----ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 455666665554 4566668888876653 2333344 455666778888898888774 677888888877
Q ss_pred HHhhcCCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC-----C-CeehHHHHHHHHH
Q 005268 137 PVCARSDNILSGLLIHLYIV----KHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-----R-DVVSWNSIIAAYE 206 (705)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~ 206 (705)
..=-..|+.+....+.+.-+ ..|+..+...|-.=...+-+.|..-.+..+...... . -..+|+.-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 77778888888877766543 457777777777777777788887777777766532 1 2358888889999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 005268 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286 (705)
Q Consensus 207 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~ 286 (705)
+.+.++-|..+|....+. .+-+...|......=-..|..+.-..++..++.. .+.....|-....-+-+.|++..|+
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 999999999998888764 2333445555555556678888888888888877 4667777888888888899999999
Q ss_pred HHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhC
Q 005268 287 AVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363 (705)
Q Consensus 287 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 363 (705)
.++.+.- ..+...|-.-+.....+.+++.|..+|.+... ..|+...|.--+..---++..++|.+++++.++.
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9887654 33667899999999999999999999999977 6777777776666666788999999999999886
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 440 (705)
++.-...|-.+.+.+-+.++++.|.+.|..-. -|+..+ |-.|...--+.|+..+|..+|++.+-.+ +-|...|...
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 55556788889999999999999999998766 344444 8888888888999999999999998864 4466789999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 520 (705)
+..=.+.|..++|..+.....++ .+.+-..|.--|.+..+.++-..+.+.+++..- |+.+.-++...+.....++.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888864 455667888888888899988888888888753 55555677777888889999
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEE
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEV 578 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 578 (705)
|..-|++++..+|++..++..+-..+...|.-++-.+++.+.... .|.-|-.|.-+
T Consensus 836 ar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 999999999999999999999988999999999999998877654 23445556443
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.1e-11 Score=117.91 Aligned_cols=416 Identities=12% Similarity=0.111 Sum_probs=271.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhh--cCCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 005268 94 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA--RSDNILSG-LLIHLYIVKHGLEFNLFVSNNL 170 (705)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 170 (705)
+++=|.|+. ...+|....+.-+|+.|.+.|+......-..++...+ ...++--+ .+-|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 456666665 4567889999999999999998877766666655433 23333222 223333444432 222233
Q ss_pred HHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHH
Q 005268 171 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 250 (705)
Q Consensus 171 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 250 (705)
+.|.+.+ -+|+..+ +...++..||.|+++--..+.|.+++++-.....+.+..+|+.++.+.+-. .++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4455544 4455444 466899999999999999999999999999988999999999999876433 448
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHh----cCC----CCChhHHHHHHHHHHHcCChhH-HHHHHH
Q 005268 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE----GLP----VKDVISWNTLITGYAQNGLASE-AIEVFQ 321 (705)
Q Consensus 251 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 321 (705)
.+...|+... +.||..++|+++....+.|+++.|++-+- +|. +|...+|..+|..+++.++..+ |..++.
T Consensus 259 ~Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8889999888 99999999999999999999988776554 333 6788899999999999888754 444444
Q ss_pred hhhhc---CCCCC----CcccccchhHHhhccCchHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHH
Q 005268 322 MMEEC---NEINP----NQGTYVSILPAYSHVGALRQGIKIHARVIKN----CLCFD---VFVATCLVDMYGKCGRIDDA 387 (705)
Q Consensus 322 ~m~~~---~~~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~li~~y~k~g~~~~A 387 (705)
++..+ ..++| |..-|.+.++.|.+..+.+.|.+++...... -+.|+ ...|..+.++.++...++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44320 22344 3445678889999999999999998876532 12232 34566777888888889999
Q ss_pred HHHHhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---------------
Q 005268 388 MSLFYQVPR----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG--------------- 448 (705)
Q Consensus 388 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--------------- 448 (705)
...|+.|.+ ++..+-.-++.+....|.++-.-+++.+|...|..-+...-..++..+++..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 999998874 3444455566677777888877788888877664444333333333333221
Q ss_pred -----cHHHHHH-HHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhc
Q 005268 449 -----LVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPDASIWGALLGACRIH 515 (705)
Q Consensus 449 -----~~~~a~~-~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~ 515 (705)
++.++.+ --.+|. .........++..-++.|.|+.++|.+++.-. +..|.....--|..+-.+.
T Consensus 498 ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 0111111 001111 22333446677777778888888887776544 1223322223444445555
Q ss_pred CChhHHHHHHHHHhc
Q 005268 516 GNMELGAVASDRLFE 530 (705)
Q Consensus 516 g~~~~a~~~~~~~~~ 530 (705)
++.-.|..+++-+..
T Consensus 575 ~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASA 589 (625)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555556555555543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=2.7e-10 Score=120.64 Aligned_cols=517 Identities=12% Similarity=0.122 Sum_probs=327.6
Q ss_pred CCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccC---CCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 005268 43 NLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM---PVRDSGSWNAMISGYCQSGNAVEALDILDE 119 (705)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (705)
+...|..++..+++.. +.+...|-.|...|-..|+.+++...+-.. .+.|..-|-.+..-..+.|++++|.-.|.+
T Consensus 154 ~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3333777777777765 456667778888888888888877665432 345566787777777888888888888888
Q ss_pred HHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH----HHHHHccCCHHHHHHHHhccCC--C
Q 005268 120 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL----INMYAKFGMMRHALRVFDQMME--R 193 (705)
Q Consensus 120 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L----i~~y~~~g~~~~A~~~f~~m~~--~ 193 (705)
.++.. +++...+--=...|-+.|+...|..-+.++....++.|..-.-.+ +..|...++-+.|.+.++.... .
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 87653 334333334445566778888888888888776543333333333 4455566666777777766644 2
Q ss_pred ---CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC----------------------ChhhHH----HHHHHHHccC
Q 005268 194 ---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP----------------------DLLTLV----SLTSIVAQLN 244 (705)
Q Consensus 194 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------~~~t~~----~ll~a~~~~~ 244 (705)
+...+|.++..|.+...++.|......+......+ +...|. -+.-++....
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 33467888888888888888888888876621111 211111 2223345566
Q ss_pred ChhhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCChhHHHHH
Q 005268 245 DCRNSRSVHGFIMRRG-WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK----DVISWNTLITGYAQNGLASEAIEV 319 (705)
Q Consensus 245 ~~~~a~~i~~~~~~~g-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 319 (705)
..+....+...+.+.. +...++..+.-+.++|...|.+.+|.++|..+... +...|--+..+|...|.+++|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 6666666777666665 12345678888999999999999999999888643 567899999999999999999999
Q ss_pred HHhhhhcCCCCCCc-ccccchhHHhhccCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005268 320 FQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390 (705)
Q Consensus 320 ~~~m~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 390 (705)
|..... ..|+. ..-.++-..+.+.|+.++|.+.++.+. ..+..|+....--..+.|.+.|+.++=..+
T Consensus 472 y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 472 YEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999987 66743 344566677788999999999988743 234556666666777888888887764443
Q ss_pred HhhCCC--------------------------CCcchHHHHHHHHHhcCChHHHH------HHHHHHHHcCCCCCH--HH
Q 005268 391 FYQVPR--------------------------SSSVPWNAIISCHGIHGQGDKAL------NFFRQMLDEGVRPDH--IT 436 (705)
Q Consensus 391 ~~~~~~--------------------------~~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p~~--~t 436 (705)
-..|.. .+...-..++.+-.+.++..... ..+..-...|+.-+. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 322210 01111222233333332211111 111111222333332 24
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcc----hHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-HHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVDLFGRAGHLGMAHNFIQNMP------VRPD-ASIW 505 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~ 505 (705)
|..++.+..+.+++++|..+...+...+-+..+.. .-.+++.+-...+++.+|.+.++.|- ..|. ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 56666777888888888888877766544433332 23344555567788888888777762 1232 4467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCC-cchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 506 GALLGACRIHGNMELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
+...+...++++-.--.+....+....|++ +..+...+......|.|..|...+-..-.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 766666666666554555555555566665 44455566667777888888776555443
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.1e-14 Score=143.30 Aligned_cols=255 Identities=13% Similarity=0.145 Sum_probs=109.8
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccc-hhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS-ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 382 (705)
...+.+.|++++|++++++... ....|+...|.. +...+...++.+.|.+.++.+...+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4445566666666666644332 211344444433 333344566677777777776665422 45556666666 5778
Q ss_pred CHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005268 383 RIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHM 459 (705)
Q Consensus 383 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 459 (705)
++++|.+++...- .++...|..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877664 3445557778888888899999999998877533 244556777788888999999999999998
Q ss_pred hHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 460 MQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 460 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
..+. .|+ ......++..+...|+.+++.++++... .+.|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8854 664 6678888999999999998877776652 234567889999999999999999999999999999999
Q ss_pred chhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 537 GYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.....+++++...|+.++|.+++++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=2.2e-11 Score=128.72 Aligned_cols=325 Identities=14% Similarity=0.145 Sum_probs=204.9
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHh---cCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 005268 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE---GLPVKDVISWNTLITGYAQNGLASEAIEVF 320 (705)
Q Consensus 244 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 320 (705)
|+++.|..++..+++.. +.+...|..|...|-..|+.+++...+- .+.+.|...|-.+..-..+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555553 5555566666666666666666554442 222445556666666666666666666666
Q ss_pred HhhhhcCCCCCCcc-cccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHHhhCC
Q 005268 321 QMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVA----TCLVDMYGKCGRIDDAMSLFYQVP 395 (705)
Q Consensus 321 ~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~k~g~~~~A~~~~~~~~ 395 (705)
.+..+ ..|+.. .+.--...|-+.|+...|..-+.++.....+.|..-. -..+..|...++-+.|.+.++...
T Consensus 231 ~rAI~---~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQ---ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHh---cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66655 344332 2222334455556666666666665554322222211 223444555566666766666655
Q ss_pred C--CC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHH
Q 005268 396 R--SS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---------------------------RPDHITFVSLLTA 443 (705)
Q Consensus 396 ~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~~~ll~a 443 (705)
. .+ ...+|.++..|....+++.|......+..... .++...+ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 3 22 23367777777777777777777777665222 2222221 12223
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCh
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKP--HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR---PDASIWGALLGACRIHGNM 518 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~ 518 (705)
+.+....+....+..-..+. .+.| +...|.-+.++|.+.|++.+|+.++..+... .+..+|--+...|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33444333333333333332 5334 5678999999999999999999999988322 3577999999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeE
Q 005268 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 575 (705)
++|.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+.+..+..-+-+..+++.|
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999887544444466666
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=1e-10 Score=123.12 Aligned_cols=530 Identities=11% Similarity=0.031 Sum_probs=297.4
Q ss_pred HHHHHHhHhCCCCCCccchHHHHHHhcCCch--HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCC
Q 005268 16 DCFYQFTLTSGLRPDFYTFPPVLKACRNLVD--GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD 93 (705)
Q Consensus 16 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~ 93 (705)
.++.. +...|+.|+.+||.+++..|+..++ |..++..|.-..++.+..+++.++....+.++.+.|. +|.
T Consensus 11 nfla~-~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLAL-HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHH-HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34555 7889999999999999999998888 5558999988888888899999999999999888776 678
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCChhhHHhHHHHhhcC-CCh------HHHHHHHHHHHHh
Q 005268 94 SGSWNAMISGYCQSGNAVEALDILDE-MR-------LEGVSMDPITVASILPVCARS-DNI------LSGLLIHLYIVKH 158 (705)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~-~~~------~~a~~~~~~~~~~ 158 (705)
..+|+.|..+|.+.|+... ++.-++ |. ..|+..-..-+-..+..|... .+. .--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 333232 22 123222222222222222111 010 0111223333333
Q ss_pred CCCCchhHHHHHHHHHHcc-----CCHHHHHHHHhccCC-CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhh
Q 005268 159 GLEFNLFVSNNLINMYAKF-----GMMRHALRVFDQMME-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 232 (705)
Q Consensus 159 g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 232 (705)
+....+..++.=...+.+. ..+++-........+ ++..++.+++..-..+|+.+.|..++.+|.+.|.+.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 3111111111111111221 223333333344444 7888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 005268 233 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312 (705)
Q Consensus 233 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 312 (705)
|-.++-+ .++......+..-+...| +.|+..++.-.+-...++|....+....+.-.--....+..+..+...+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 8888766 777888888888888888 889888888776666665553333222110000011122222222111111
Q ss_pred hhH-----HHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 005268 313 ASE-----AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387 (705)
Q Consensus 313 ~~~-----A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 387 (705)
.+. ....+.+..- .|+.-....|. +..-....|.-+...++-..+..- ....-+.-+++|. +.+
T Consensus 318 l~~nl~~~v~~s~k~~fL-lg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~~-----~~l 386 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFL-LGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAFG-----ALL 386 (1088)
T ss_pred HHHHHHHHHHHHhhHHHH-hccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHHH-----HHH
Confidence 111 1111111111 12211111111 111112244445555544444321 1111111112211 223
Q ss_pred HHHHhhCCCCCcch-HHHHHHHHHh---cC------------ChHHHHHHHHHHHHc----CCCC----C---HHHHHHH
Q 005268 388 MSLFYQVPRSSSVP-WNAIISCHGI---HG------------QGDKALNFFRQMLDE----GVRP----D---HITFVSL 440 (705)
Q Consensus 388 ~~~~~~~~~~~~~~-~~~li~~~~~---~g------------~~~~A~~~~~~m~~~----g~~p----~---~~t~~~l 440 (705)
.+.|.++..+.... ++ .-.+... .. +...+++-+..+... -..| . ...-+.+
T Consensus 387 rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 44444444332222 22 1111111 11 122222222111110 1111 0 1123445
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-----VRPDASIWGALLGACRIH 515 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~ 515 (705)
+..|.+.-+..++...-+..... -+ | ..|..||+.+....++++|..+.++.. +.-|..-+..+.+...++
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 55566555555555443333221 22 2 579999999999999999999998884 223455567888888899
Q ss_pred CChhHHHHHHHHHhcc---CCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeE
Q 005268 516 GNMELGAVASDRLFEV---DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575 (705)
Q Consensus 516 g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 575 (705)
+....+..+.+++.+. .|.-......+.+..+..|+.+...++++-....|+.- .|--|
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9888888888877652 34344556677888888999999999999999888865 34444
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=2.6e-09 Score=109.01 Aligned_cols=497 Identities=11% Similarity=0.063 Sum_probs=384.3
Q ss_pred CCCccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCC---CCCcchHHHHHHHH
Q 005268 28 RPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGY 104 (705)
Q Consensus 28 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 104 (705)
-|+.+.+--..--+-...+++.++.+..+.- +.+...|. +|++...++.|..+++... ..+...|.+-...=
T Consensus 376 iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LE 450 (913)
T KOG0495|consen 376 IPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLE 450 (913)
T ss_pred CCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Confidence 4555543222222233333777777776653 33444444 4566667788888887654 45777888877777
Q ss_pred HhCCChhHHHHHHHH----HHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccC
Q 005268 105 CQSGNAVEALDILDE----MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFG 178 (705)
Q Consensus 105 ~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g 178 (705)
-.+|+.+...++..+ +...|+..|...|..=..+|-..|..-....+....+.-|++.. ..+|+.-...|.+.+
T Consensus 451 E~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 451 EANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc
Confidence 788999888888755 45679999999999999999999999999999999998887543 457888889999999
Q ss_pred CHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 005268 179 MMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255 (705)
Q Consensus 179 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 255 (705)
.++-|+.+|....+ .+...|...+..--..|..++-..+|++....- +-...-+....+-.-..|+...++.++..
T Consensus 531 ~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 531 AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999987765 356678887777777899999999999998762 23333444445556677999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc
Q 005268 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333 (705)
Q Consensus 256 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 333 (705)
+.+.. +.+..+|-+-+..-....+++.|+.+|.+.. .+....|.--+...--.++.++|++++++..+ .-|+-
T Consensus 610 af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f 684 (913)
T KOG0495|consen 610 AFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDF 684 (913)
T ss_pred HHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCch
Confidence 99885 6688899999999999999999999998765 34566676666666677899999999999887 66765
Q ss_pred cc-ccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHH
Q 005268 334 GT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCH 409 (705)
Q Consensus 334 ~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 409 (705)
.- |..+...+-+.++++.|+..|..=.+. ++..+..|-.|...=-+.|.+-.|+.+|++.. +.|...|-..|..-
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 43 445556677778888888877765554 45677888899999999999999999999877 55667799999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 489 (705)
.+.|..+.|..+..+.++. .+.+...|..-|...-+.++-......++ ..+-|+.+.-.+..++-...+++.|
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998885 45556788887777777766555444433 3355677888888899999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 490 HNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 490 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
.+-|.+. ...|| ..+|.-+..-+.+||.-+.-.+++.+....+|.....+...+
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 9999888 55666 568999999999999999999999999999998766555443
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=7e-11 Score=116.41 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=168.0
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 346 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-...|+... +.|...|.--...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 456667777777777754332 2336666677888888888888888765 455566777777777788999999999
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 005268 423 RQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP 500 (705)
Q Consensus 423 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 500 (705)
++.++ +.|+. ..|.-+-.+..+.+.++++...|++..++ ++.-++.|+-....+..+++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 67765 57877877888899999999999999875 5556789999999999999999999999876 4444
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 501 D---------ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 501 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
+ +.+-.+++-.-. .+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 223333333333 38999999999999999999999999999999999999999999988654
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.3e-09 Score=107.01 Aligned_cols=491 Identities=11% Similarity=0.091 Sum_probs=350.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHH
Q 005268 62 DVFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138 (705)
Q Consensus 62 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 138 (705)
+...|-.-.+-=...+++..|+.+|++.. .++...|-.-+..=.++.....|..++++....=.+.|.. |---+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHH
Confidence 33444443444445678889999999876 3667778888888899999999999999988642222332 3333334
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhcc--CCCCeehHHHHHHHHHcCCChhhHHH
Q 005268 139 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHG 216 (705)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~ 216 (705)
=-..|++..|+++|+.-.+ .+|+...|++.|+.=.+...++.|+.+++.. ..|++.+|--...-=-++|....|..
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567999999999998776 5899999999999999999999999999986 45899999888888889999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHH----HccCChhhHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcCCHHHHHHH--
Q 005268 217 FFTTMQQAGIQPDLLTLVSLTSIV----AQLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINSACAV-- 288 (705)
Q Consensus 217 ~~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~A~~~-- 288 (705)
+|....+. -.|...-..+..++ .+...++.++.++...+.. +|.+ ...+..+...--+-|+...-...
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99887653 12223223333333 4556788899999998887 3444 56666666666666764433332
Q ss_pred ------HhcCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcc-------cccchhHHh---hccCch
Q 005268 289 ------FEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-------TYVSILPAY---SHVGAL 349 (705)
Q Consensus 289 ------f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------t~~~ll~a~---~~~~~~ 349 (705)
++.+... |-.+|-..+..--..|+.+...++|++... +++|-.. .|.-+=-+| ....+.
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2222222 567888888888888999999999999885 4666321 121111122 346789
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 005268 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYG----KCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFR 423 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (705)
+.++++++..++. ++...+++..+--+|+ ++.++..|.+++.... .|-...+-..|..-.+.++++....+++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999984 6667777777666665 5788999999998776 4555667777777788999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005268 424 QMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD 501 (705)
Q Consensus 424 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 501 (705)
+.++ ..| |..+|......=...|+.+.|..+|.-......+.-....|.+.|+-=...|.++.|..++++. ...+.
T Consensus 462 kfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9999 455 4578888888788899999999999988765333334456777888888999999999999887 33455
Q ss_pred HHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHhc----cCCCCcc--hhhhhhhhhhhcCCcchHHHHH
Q 005268 502 ASIWGALLGACR-----IHG-----------NMELGAVASDRLFE----VDSENVG--YYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 502 ~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
..+|-++..--. +.+ ++..|..+|+++.. .+|.... .....-+.-...|...+...+-
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~ 619 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQ 619 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 668888765433 333 56678888888765 2332211 1122334445567666777776
Q ss_pred HHHHh
Q 005268 560 SLARD 564 (705)
Q Consensus 560 ~~m~~ 564 (705)
++|.+
T Consensus 620 s~mPk 624 (677)
T KOG1915|consen 620 SKMPK 624 (677)
T ss_pred HhccH
Confidence 66654
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.2e-10 Score=111.26 Aligned_cols=390 Identities=12% Similarity=0.121 Sum_probs=288.7
Q ss_pred HccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHH
Q 005268 175 AKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251 (705)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 251 (705)
...+++..|+.+|+.... +++..|---+..=.++.....|..++++....=...|.. +---+-.=-.+|+...+++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 345667778888877755 566677777777778888888888888776542222222 2223333455788888999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCC
Q 005268 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329 (705)
Q Consensus 252 i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (705)
++..-+. ..|+...|++.|+.-.+-..++.|+.+++... .|++.+|--....-.++|+..-|..+|....+ .
T Consensus 163 iferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie---~ 236 (677)
T KOG1915|consen 163 IFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE---F 236 (677)
T ss_pred HHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---H
Confidence 9888776 57999999999999999999999999998754 68888888888888889999999999988776 2
Q ss_pred CCCcccccchhHHh----hccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HhhCC
Q 005268 330 NPNQGTYVSILPAY----SHVGALRQGIKIHARVIKNCLCFD--VFVATCLVDMYGKCGRIDDAMSL--------FYQVP 395 (705)
Q Consensus 330 ~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~k~g~~~~A~~~--------~~~~~ 395 (705)
-.|...-..+..++ .....++.|.-++..+++. ++.+ ...|..+...=-+-|+.....+. ++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 22333323333444 3456788899999998886 3333 45566666555556664443332 22222
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--H---HHHH-HH-HH---hccCcHHHHHHHHHHhHH
Q 005268 396 ---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--T---FVSL-LT-AC---SHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 396 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t---~~~l-l~-a~---~~~g~~~~a~~~~~~m~~ 462 (705)
.-|..+|--.+..-...|+.+...++|++.+.. ++|-.. - |..| ++ +| ....+++.+.++++...+
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345566877888888889999999999999986 666421 1 2222 12 22 347789999999998875
Q ss_pred hhCCcCCcchHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 463 EFGIKPHLKHYGCMVDLFG----RAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 463 ~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
-++....++.-+--+|+ |+.++..|.+++..+ +.-|...++...|..-.+.++++....+|++.++-.|.|..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 23445567776665554 888999999999776 67799999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeE
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 575 (705)
++...+..-...|+++.|+.+|..++.......|..-|
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999999999887767777666
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=4.1e-12 Score=130.16 Aligned_cols=244 Identities=12% Similarity=0.123 Sum_probs=161.0
Q ss_pred ChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 312 LASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
+..+|+..|..... ..+ +......+..+|..++++++++.+|+.+.+.. .-.+..+|++.+.-+-+.=.+..--
T Consensus 334 ~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 45677777776443 233 33444556667777777777777777776542 1124556666654433221111111
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc
Q 005268 389 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467 (705)
Q Consensus 389 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 467 (705)
+-+-.+.+..+.+|-++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 112222345567788888888888888888888888877 667 34677777666777777888888876554 3
Q ss_pred CCcchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhh
Q 005268 468 PHLKHYGC---MVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 468 p~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
.++.+|++ |.-.|.|+++++.|+-.|+++ .+.|. .++...+...+.+.|+.++|++++++++.++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 34445554 455677888888888888777 56664 55566666777777888888888888888888888777778
Q ss_pred hhhhhhcCCcchHHHHHHHHHhC
Q 005268 543 SNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 543 ~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.++...+++++|...++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 88888888888888888877664
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.2e-10 Score=109.24 Aligned_cols=370 Identities=13% Similarity=0.126 Sum_probs=244.0
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHH--HHH
Q 005268 160 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV--SLT 237 (705)
Q Consensus 160 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 237 (705)
...|.+.+-...-.+-+.|....|+..|-.....-+..|.+.+....-..+.+.+..+. .|...|...+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 34455444444455667788888888888776655555555443322222222222111 12222222222 234
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcC
Q 005268 238 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK------DVISWNTLITGYAQNG 311 (705)
Q Consensus 238 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g 311 (705)
.++......+++.+-.......| ++.+..+-+.....+-...+++.|+.+|+++... |..+|+..+- .++.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 56666677778888888888888 8888877777777778888999999999988754 4456665543 3332
Q ss_pred Chh---HHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 312 LAS---EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 312 ~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
+.. -|..+++ + ...+ +.|...+.+-|+-.++.+.|...|+++++.+ +....+++.+..-|....+...|.
T Consensus 312 ~skLs~LA~~v~~-i---dKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I---DKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHH-h---ccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221 1222221 1 2233 3466777788888888888999998888865 335667888888888888888888
Q ss_pred HHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 389 SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 389 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
+-+++.. +.|-..|..|..+|...+.+.-|+-.|++..+ ++|+ +..|..|..+|.+.++.++|++.|.....-
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~- 461 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL- 461 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 8888665 66777788899999888888888888888888 5665 468888888888899999999888877653
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP--------VRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 465 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
-..+...+..|.++|-+.++.++|...|++.- ..|... +.--|..-+.+.+++++|.....+...-+|
T Consensus 462 -~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-- 538 (559)
T KOG1155|consen 462 -GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-- 538 (559)
T ss_pred -cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc--
Confidence 23345678888888888888888887776541 223211 222244556677777777765555444322
Q ss_pred cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 536 VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+||..+++..+..
T Consensus 539 ---------------e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ---------------ECEEAKALLREIRKI 553 (559)
T ss_pred ---------------hHHHHHHHHHHHHHh
Confidence 346777777766554
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=7.9e-12 Score=128.13 Aligned_cols=276 Identities=16% Similarity=0.092 Sum_probs=216.4
Q ss_pred CHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHH
Q 005268 281 IINSACAVFEGLPVK--DV-ISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIH 356 (705)
Q Consensus 281 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~ 356 (705)
+..+|...|..++.. |+ .....+..+|...+++++|.++|+...+...... +..+|++++-.+-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 467899999886643 33 3345567889999999999999999987222222 4556777766543321 22222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005268 357 A-RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432 (705)
Q Consensus 357 ~-~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 432 (705)
. .+++. -+..+.+|.++.++|.-+++.+.|++.|++..+-|. .+|+-+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 355788999999999999999999999999885554 5577777778889999999999999987 667
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005268 433 DH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGAL 508 (705)
Q Consensus 433 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 508 (705)
.. -.|..+...|.+.++++.|.-.|+.+. .+.| +.....++...+-+.|+.|+|+++++++ ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 66 478888899999999999999999876 5777 4567778888999999999999999998 3333 33333345
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+..+...+++++|.+.+|++.++-|++...|.+++.+|-+.|+.+.|..-|.-|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5667778999999999999999999999999999999999999999999888877653
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=1.1e-10 Score=121.98 Aligned_cols=224 Identities=13% Similarity=0.025 Sum_probs=145.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCch
Q 005268 273 VDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 349 (705)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 349 (705)
...+...|+++.|...++.+. +.+......+...|.+.|++++|.+++..+.+ .+..++. .
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~-~-------------- 223 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEE-H-------------- 223 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHH-H--------------
Confidence 556667777777777766654 33556677777777777888888888877776 3222110 0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005268 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQML 426 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (705)
..++- ...+..++....+..+.+...++++.++ +.++.....+...+...|+.++|.+++++..
T Consensus 224 --~~~l~-----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 224 --RAMLE-----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred --HHHHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00000 0012222322333344555666666665 3455567777778888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 005268 427 DEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASI 504 (705)
Q Consensus 427 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 504 (705)
+ ..|+.... ++.+....++.+++.+..+...+. .| |...+.++..++.+.|++++|.+.|+++ ...|+...
T Consensus 291 ~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 291 K--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred h--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 7 34444211 223334557888888888877754 34 4456777888888888888888888877 56788888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccC
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
+..|...+...|+.++|.+.+++.+.+.
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888888887653
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.3e-09 Score=102.82 Aligned_cols=383 Identities=12% Similarity=0.078 Sum_probs=267.0
Q ss_pred CCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHH-HHH
Q 005268 124 GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN-SII 202 (705)
Q Consensus 124 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~-~li 202 (705)
+..-|.+-+-.......+.|....|...+...+.. -+..|.+-+...--.-+.+.+..+-...+..+...-. -+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 33445555444445556778888888888776654 2334444444444445566665555455443221111 234
Q ss_pred HHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcCC
Q 005268 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM-EDVIIGNAVVDMYAKLGI 281 (705)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~~li~~y~~~g~ 281 (705)
.+|-...+.+++++-.......|.+-+...-+....+.....+++.|..+|+.+.+...+. .|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 5666666888888888888888877666666666666778899999999999999986332 356677666533222222
Q ss_pred HH-HHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc-ccccchhHHhhccCchHHHHHHHHHH
Q 005268 282 IN-SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARV 359 (705)
Q Consensus 282 ~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~ 359 (705)
+. -|..+++ +..--+.|...+..-|.-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+-+..+
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 2333332 2222345566667778888999999999999988 77754 45667777889999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005268 360 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436 (705)
Q Consensus 360 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 436 (705)
++.. +.|-..|-.|.++|.-.+...-|+-.|++.. +.|...|.+|..+|.+.++.++|+..|.+....| ..+...
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 9874 5688899999999999999999999999875 6788889999999999999999999999999876 446788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhh---C-CcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEF---G-IKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 511 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 511 (705)
+..|...+-+.++.++|.++|....+.. | +.| ......-|..-+-+.+++++|........ .
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-------------~ 535 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-------------K 535 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-------------c
Confidence 9999999999999999999998877642 2 222 12223335566778888888876554431 0
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 005268 512 CRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~ 531 (705)
. ....++|..+++++...
T Consensus 536 ~--~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 G--ETECEEAKALLREIRKI 553 (559)
T ss_pred C--CchHHHHHHHHHHHHHh
Confidence 0 22346677777666553
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=2.6e-10 Score=119.96 Aligned_cols=283 Identities=13% Similarity=0.035 Sum_probs=141.9
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHH
Q 005268 206 EQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284 (705)
Q Consensus 206 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 284 (705)
...|+++.|.+.+.+..+. .|++. .+.....+....|+.+.+.+.+....+.. ..+...+.......+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence 3468888888888776553 34332 22333444555566666666666655442 11112233334555555555555
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHH
Q 005268 285 ACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361 (705)
Q Consensus 285 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 361 (705)
|...++.+. +.+...+..+...+.+.|++++|.+++....+
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k------------------------------------ 215 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK------------------------------------ 215 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------------------------
Confidence 555555443 22344455555555555555555555555554
Q ss_pred hCCCCchhH-------HHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005268 362 NCLCFDVFV-------ATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 431 (705)
Q Consensus 362 ~g~~~~~~~-------~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 431 (705)
.+..+.... +..+++.-......+.....++..+. .+...+..+...+...|+.++|.+++++..+. .
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~ 293 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--L 293 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--C
Confidence 322111111 11111111112223444445555552 35666777777788888888888888888774 4
Q ss_pred CCHHHH--HH-HHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHH
Q 005268 432 PDHITF--VS-LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN--M-PVRPDASIW 505 (705)
Q Consensus 432 p~~~t~--~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~ 505 (705)
||.... .. ........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...||...+
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 444321 11 11122334555666666655554311111113344555555566666666666552 2 344555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh
Q 005268 506 GALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
..+...+.+.|+.++|.+++++.+
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555556666666655555543
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.2e-10 Score=121.78 Aligned_cols=285 Identities=10% Similarity=-0.038 Sum_probs=190.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 005268 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 186 (705)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 186 (705)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.+..+.+....+...........+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 688888888877765532111 2223333444468888888988888887753332223333446788888999999998
Q ss_pred HhccCCC---CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCC
Q 005268 187 FDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263 (705)
Q Consensus 187 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 263 (705)
++.+.+. +......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 8887652 4556777888889999999999999998877544221 111000
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchh
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 340 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 340 (705)
..++..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++.+..+ ..||... .++
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l 301 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLL 301 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHH
Confidence 01112222223333445555666666552 3666777778888888888888888877765 3344311 123
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHH
Q 005268 341 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 418 (705)
Q Consensus 341 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 418 (705)
.+....++.+.+.+..+...+. .+.|.....++...+.+.|++++|.+.|+... .|+...+..+...+.+.|+.++|
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3333457788888888777765 34566778888888889999999999998876 56666677888888899999999
Q ss_pred HHHHHHHHH
Q 005268 419 LNFFRQMLD 427 (705)
Q Consensus 419 ~~~~~~m~~ 427 (705)
.+++++-..
T Consensus 381 ~~~~~~~l~ 389 (398)
T PRK10747 381 AAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh
Confidence 999887765
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.5e-12 Score=130.04 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=85.6
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChhHHHHHH
Q 005268 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVF 320 (705)
Q Consensus 243 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 320 (705)
.++.+.+...++.+...+ +.++..+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccccccccccccccc--ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444433 2244445555555 56677777776665542 235556666777777777777777777
Q ss_pred HhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CC
Q 005268 321 QMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RS 397 (705)
Q Consensus 321 ~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~ 397 (705)
+.........++...|......+.+.|+.++|...++.+++.. +.|..+.+.++..+...|+.+++.+++.... +.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 7766522233455555566666677777777777777777653 2346666777777777777777665555443 44
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
|...|..+..+|...|++++|+..|++..... +.|..+...+..++...|+.++|.++.....
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 55667777777777777777777777777632 3345566666677777777777777665543
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.8e-09 Score=107.42 Aligned_cols=263 Identities=10% Similarity=0.020 Sum_probs=206.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 375 (705)
++...-.-..-+...+++.+..++++...+. .++....+..-|..+...|+-..-..+-..+++. .+....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3344444556677889999999999998872 2234444444555667777766666665666665 566788899999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 452 (705)
-.|.-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.+..+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999998774433 34999999999999999999999888773 22223334445556888999999
Q ss_pred HHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHH
Q 005268 453 GQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP--------VRP-DASIWGALLGACRIHGNMELGA 522 (705)
Q Consensus 453 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~ 522 (705)
|.++|.+.. ++.| |+..++-+.-+.-..+.+.+|...|+... ..+ -..+|+.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999998776 6777 56777777777778899999999987762 111 2456889999999999999999
Q ss_pred HHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+++++.+.|.++.+|..++-+|...|+++.|...+.+....
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999886643
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.2e-10 Score=111.55 Aligned_cols=428 Identities=12% Similarity=0.089 Sum_probs=279.0
Q ss_pred hHHhHH---HHhhcCCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHccCCHHHHHHHHhccCC--CC------eehH
Q 005268 131 TVASIL---PVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAKFGMMRHALRVFDQMME--RD------VVSW 198 (705)
Q Consensus 131 t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~~~~A~~~f~~m~~--~~------~~~~ 198 (705)
||+.|. .-|.......+|...++.+++...-|+.-.. -.+-+.|.+...+.+|++.++.... |+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 555444 3455566678888999988888766665432 2345678888899999998865433 22 1234
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCC-----------CchhH
Q 005268 199 NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF-----------MEDVI 267 (705)
Q Consensus 199 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----------~~~~~ 267 (705)
|.+--.+.+.|+++.|+..|+...+. .|+..+-..++-.+...|+-+..++.|..++...+. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 45555688999999999999988764 588777666666777788999999888888764311 12222
Q ss_pred HHHHHH-----HHHHhcC--CHHHHH----HHHhcCCCCChh---HHH------------------HHHHHHHHcCChhH
Q 005268 268 IGNAVV-----DMYAKLG--IINSAC----AVFEGLPVKDVI---SWN------------------TLITGYAQNGLASE 315 (705)
Q Consensus 268 ~~~~li-----~~y~~~g--~~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~ 315 (705)
..|.-+ .-..+.. +-++++ ++..-+..+|-. -|. .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222211 1111111 112221 222222222210 011 01234788999999
Q ss_pred HHHHHHhhhhcCCCCCCccccc--chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005268 316 AIEVFQMMEECNEINPNQGTYV--SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393 (705)
Q Consensus 316 A~~~~~~m~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 393 (705)
|+++++-..+ ..-+.-+..-+ +++.....-.++..|.++-+.++... .-+....+.-.+.-...|++++|.+.+++
T Consensus 438 aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999988876 32222222222 22222223345666666666554432 11222222122223347999999999999
Q ss_pred CCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc
Q 005268 394 VPRSSSVPWNAII---SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 470 (705)
Q Consensus 394 ~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 470 (705)
....|...-.+|. -.+...|+.++|++.|-++..- +..+......+.+.|....+..+|++++-.... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 9988776644433 3467789999999999988763 344566777888899999999999999866542 344478
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQN-MP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
.+.+-|.++|-+.|+-.+|.+..-. .. ++-+..+..-|..-|....-++.++..|+++--+.|+.......++..+.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 8999999999999999999887543 33 333555555566666677778999999999999999766655667777888
Q ss_pred cCCcchHHHHHHHHHhC
Q 005268 549 VGKWEGVDEVRSLARDR 565 (705)
Q Consensus 549 ~g~~~~a~~~~~~m~~~ 565 (705)
.|++..|..+++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999887654
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=5e-10 Score=117.78 Aligned_cols=295 Identities=11% Similarity=0.028 Sum_probs=199.8
Q ss_pred HHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChhh-HHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005268 98 NAMISGY--CQSGNAVEALDILDEMRLEGVSMDPIT-VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 174 (705)
Q Consensus 98 ~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 174 (705)
..+..+. ...|+++.|.+.+.+..+. .|+... +-....+....|+.+.|.+.+..+.+....+...+.-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 3344444 4578999999999887664 455433 3444556677899999999999887765444444555567888
Q ss_pred HccCCHHHHHHHHhccCC--C-CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHH
Q 005268 175 AKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRS 251 (705)
Q Consensus 175 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 251 (705)
...|+++.|...++.+.+ | +...+..+...|.+.|++++|.+.+..+.+.++.+.. .+..+-.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------- 229 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------- 229 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------
Confidence 889999999999988865 3 5556778888899999999999999999887643222 1111000
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCC
Q 005268 252 VHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 328 (705)
Q Consensus 252 i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (705)
..+..++..-......+...+.++..+. ++...+..+...+...|+.++|.+++++..+
T Consensus 230 ---------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--- 291 (409)
T TIGR00540 230 ---------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--- 291 (409)
T ss_pred ---------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---
Confidence 0111111111122234445555555553 3677788888888888888888888888877
Q ss_pred CCCCccccc-chhHHh--hccCchHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhh--CC--CCCc
Q 005268 329 INPNQGTYV-SILPAY--SHVGALRQGIKIHARVIKNCLCFDV--FVATCLVDMYGKCGRIDDAMSLFYQ--VP--RSSS 399 (705)
Q Consensus 329 ~~p~~~t~~-~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~k~g~~~~A~~~~~~--~~--~~~~ 399 (705)
..||..... .++..+ ...++.+.+.+.++...+.. +.|. ....++...+.+.|++++|.+.|+. .. .|+.
T Consensus 292 ~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 556554311 122222 33467777888887777652 3344 6677888899999999999999993 42 5777
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
..+..+...+.+.|+.++|.+++++...
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788899999999999999999988654
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=4.6e-10 Score=108.89 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=160.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
....+..+...|.+.|++++|...|++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34566777888889999999999988765 3345568888889999999999999999998853 3345677777888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 521 (705)
+...|++++|.+.++...+..........+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988764222223456777888999999999999999887 3334 466788899999999999999
Q ss_pred HHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
...++++++..|+++..+..++.++...|++++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999988877543
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7.9e-12 Score=87.33 Aligned_cols=50 Identities=32% Similarity=0.594 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc
Q 005268 92 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141 (705)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (705)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.8e-09 Score=112.32 Aligned_cols=171 Identities=13% Similarity=0.179 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHh
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-H-ITFVSLLTACS 445 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~ 445 (705)
..+++.|..+|.+.|++++|...+ +.|++++++ ..|..+. . .-++.+...|.
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHHHH
Confidence 345667777899999999998875 567777777 2223332 2 24666677788
Q ss_pred ccCcHHHHHHHHHHhHHhhC--CcCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 005268 446 HSGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNMP---------VRPD-ASIWGALL 509 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ll 509 (705)
..+.+++|..+++...+.+. +.++ ..+++.|...|-..|+++||.++++++- ..+. ...++.|.
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 89999999998887766544 2222 3578999999999999999999998771 1222 45677889
Q ss_pred HHHHhcCChhHHHHHHHHHhcc----CCCC---cchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 510 GACRIHGNMELGAVASDRLFEV----DSEN---VGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.+|.+.++.++|.++|++...+ .|+. ..+|..|+.+|...|++++|.++.+....
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999887653 4544 45577899999999999999999888763
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.3e-09 Score=98.85 Aligned_cols=286 Identities=14% Similarity=0.136 Sum_probs=176.8
Q ss_pred CCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcCCHHH
Q 005268 208 SNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINS 284 (705)
Q Consensus 208 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~ 284 (705)
+.++++|.++|-+|.+. .|. ..+-.++-+.+.+.|..+.|..+|..+.++..++.+ ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 222 223445667777888888888888887776433333 3455678888999999999
Q ss_pred HHHHHhcCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHH
Q 005268 285 ACAVFEGLPVKD---VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361 (705)
Q Consensus 285 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 361 (705)
|+.+|..+.+.+ ..+...|+..|-...+|++|++.-++..+ .+-++..+ -|
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~----eI--------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRV----EI--------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchh----HH---------------------
Confidence 999999887643 34566788899999999999999888877 33222211 11
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005268 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 438 (705)
Q Consensus 362 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 438 (705)
...|.-|...+....+++.|..++.+..+.|..+ --.+...+...|++++|++.++...+.+..--+.+..
T Consensus 180 ------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 180 ------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 1122233344444455666666666555333222 2233455666777777777777777753222234566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc--
Q 005268 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI-QNMPVRPDASIWGALLGACRIH-- 515 (705)
Q Consensus 439 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~-- 515 (705)
.|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.+.|...+ +...-+|+...+.-|+..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 6777788888888888777777643 444444455555544444445554443 4455678877777777654433
Q ss_pred -CChhHHHHHHHHHhc
Q 005268 516 -GNMELGAVASDRLFE 530 (705)
Q Consensus 516 -g~~~~a~~~~~~~~~ 530 (705)
|...+....++.++.
T Consensus 331 eg~~k~sL~~lr~mvg 346 (389)
T COG2956 331 EGRAKESLDLLRDMVG 346 (389)
T ss_pred ccchhhhHHHHHHHHH
Confidence 233444445555543
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.3e-08 Score=95.88 Aligned_cols=304 Identities=8% Similarity=-0.009 Sum_probs=219.9
Q ss_pred CCChhhHHHHHHHHHc--cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH-
Q 005268 227 QPDLLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL- 303 (705)
Q Consensus 227 ~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l- 303 (705)
.|...+....+.+++. .++-..+.+.+-.+.+...++.|+....++.+.|...|+.++|...|++...-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 4444455555555543 3444455555555655555889999999999999999999999999998775555443333
Q ss_pred --HHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 005268 304 --ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 381 (705)
Q Consensus 304 --i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 381 (705)
...+.+.|+.+....+...+.. . .+-....|..-+.......+++.|..+-+..++.. +.+...+-.-...+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~-~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFA-K-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHh-h-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 3345677888888888777765 1 11222333333344456678888888888777653 22344444444667778
Q ss_pred CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHH
Q 005268 382 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL-TACS-HSGLVSEGQRY 456 (705)
Q Consensus 382 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 456 (705)
|+.++|.-.|+... +.+..+|..|+.+|...|...+|..+-+..... ++.+..+...+. ..|. ....-++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998765 467888999999999999999999988877764 444556665552 3333 33345788888
Q ss_pred HHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 457 FHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 457 ~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
++.-. .+.|+- ...+.+..++.+.|+.++++.++++. ...||.+.-+.|....+..+.+++|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 87655 456753 45667788899999999999999887 56789999999999999999999999999999999998
Q ss_pred Ccc
Q 005268 535 NVG 537 (705)
Q Consensus 535 ~~~ 537 (705)
|..
T Consensus 504 ~~~ 506 (564)
T KOG1174|consen 504 SKR 506 (564)
T ss_pred chH
Confidence 743
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=3.5e-09 Score=99.47 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=154.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHccCCHHHH
Q 005268 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF---NLFVSNNLINMYAKFGMMRHA 183 (705)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 183 (705)
+.+.++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|..+|..++++.--+ -..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998742 2234456677888899999999999999988753111 123345567778899999999
Q ss_pred HHHHhccCCCCee---hHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhh----HHHHHHHHHccCChhhHHHHHHHH
Q 005268 184 LRVFDQMMERDVV---SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT----LVSLTSIVAQLNDCRNSRSVHGFI 256 (705)
Q Consensus 184 ~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~ 256 (705)
+.+|..+.+.... ....|+..|-+..+|++|++.-+++...+-++..+- |.-+........+.+.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998774433 456689999999999999999999988776655442 333444445556677777777777
Q ss_pred HHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh----hHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV----ISWNTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 257 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
.+.. +..+...-.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++....+.++.+
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6664 55555666666777777777777777777665554 2355566677777777777777776665
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-08 Score=102.92 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=213.8
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-Cccccc
Q 005268 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYV 337 (705)
Q Consensus 262 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~ 337 (705)
...++.+.....+-+-..+++.+..++++.+.+.| ...+..-|..+...|+..+-..+=.++.+ .-| ...+|-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchh
Confidence 45566777777888888899999999998877554 45566667888889998888888888887 556 567888
Q ss_pred chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ 414 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 414 (705)
++.--|...|+.++|++.+....... +.-...|-.+...|+-.|.-+.|...+.... +..--++--+..-|.+.+.
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 88888888899999999998876542 1224567778888988999999988776543 3333445555667888899
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCcC----CcchHHHHHHHHHhcCCHHH
Q 005268 415 GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKP----HLKHYGCMVDLFGRAGHLGM 488 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~ 488 (705)
.+-|.+.|.+... +.|+. ...+-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+++++++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999887 66754 566666666667889999999998876321 1111 23468889999999999999
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 489 AHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 489 A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
|+..+++. . .+.|..++.++.-.|...|+++.|...|.+++.+.|+|..+-..|.
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999987 2 3447889999999999999999999999999999999866555554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=1.5e-08 Score=98.42 Aligned_cols=300 Identities=14% Similarity=0.044 Sum_probs=205.4
Q ss_pred HHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 98 NAMISGYCQ--SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175 (705)
Q Consensus 98 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 175 (705)
..+..+..+ .|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++.+....++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 334445443 689999999998877765333 34566666777788999999999999988766778888888889999
Q ss_pred ccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 005268 176 KFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 252 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 252 (705)
..|+.+.|+.-.++..+ +++.........|.+.|++.+...++.+|.+.|+--|+..-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~------------------- 225 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA------------------- 225 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-------------------
Confidence 99999999887776644 57778888999999999999999999999998865443211
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCC
Q 005268 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 329 (705)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (705)
.....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+ .+.
T Consensus 226 ----------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~ 294 (400)
T COG3071 226 ----------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQW 294 (400)
T ss_pred ----------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hcc
Confidence 11122334444444444444444455565552 2455566677777888888888888877777 555
Q ss_pred CCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHH
Q 005268 330 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIIS 407 (705)
Q Consensus 330 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 407 (705)
.|+- ..+-.+.+.++.+.-.+..+...+. .+.++..+.+|...|.+.+.+.+|...|+... +++...|+.+..
T Consensus 295 D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~ 369 (400)
T COG3071 295 DPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD 369 (400)
T ss_pred ChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 5551 1222345556666666666655554 23345677777788888888888877777554 556666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
+|.+.|++.+|.+.+++.+..-.+|+
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 77777777777777776664433443
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.8e-11 Score=84.55 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=46.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 446 (705)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999999874
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=2.2e-08 Score=97.25 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=185.2
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHH
Q 005268 208 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 287 (705)
Q Consensus 208 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 287 (705)
.|++.+|.++..+-.+.+-.| ...|..-..+....|+.+.+......+.+.. -.++..+.-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 466777777666655554333 2234445556666677777777777766653 35666677777777888888888877
Q ss_pred HHhc---CCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCC
Q 005268 288 VFEG---LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 364 (705)
Q Consensus 288 ~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 364 (705)
-.++ |...++.........|.+.|++.+...++..|.+ .++--|+. +.++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e-----------------~~~l--------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEE-----------------AARL--------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHH-----------------HHHH---------
Confidence 6654 3456778888888999999999999999999988 55433321 1111
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005268 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441 (705)
Q Consensus 365 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 441 (705)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+-. .+
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 11233444443333334444444555555 3445555666667777788888888888888777777622 22
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhH
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 520 (705)
-.+.+.++.+.-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 245666666666666666655545455 46777777777777777777777755 566777777777777777777777
Q ss_pred HHHHHHHHhc
Q 005268 521 GAVASDRLFE 530 (705)
Q Consensus 521 a~~~~~~~~~ 530 (705)
|.+..++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.19 E-value=7.1e-09 Score=109.55 Aligned_cols=253 Identities=10% Similarity=0.040 Sum_probs=155.1
Q ss_pred HHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCC
Q 005268 115 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 194 (705)
Q Consensus 115 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 194 (705)
.++-.|...|+.||.+||..++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888888777 8888777777777778888888877777776665 566
Q ss_pred eehHHHHHHHHHcCCChhhHHHHHHH-HH-------HCCCCCChhhHHHHHHHH--------------HccCChhhHHHH
Q 005268 195 VVSWNSIIAAYEQSNDPITAHGFFTT-MQ-------QAGIQPDLLTLVSLTSIV--------------AQLNDCRNSRSV 252 (705)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~a~--------------~~~~~~~~a~~i 252 (705)
..+|+.|..+|.+.|+... ++..++ |. ..|+..-...|-..+.+| ...|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 21 122221111221111211 111222222222
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC
Q 005268 253 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 331 (705)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 331 (705)
...+....+..|..+ -|=.+-.-...+++-........ .++..++..++..-..+|+.+.|..++.+|.+ .|+..
T Consensus 162 l~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpi 237 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPI 237 (1088)
T ss_pred HhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCc
Confidence 222111111111111 01111111222333333333333 36778888888888888888889999989888 88887
Q ss_pred CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005268 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR 383 (705)
Q Consensus 332 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 383 (705)
+..-|-.++-+ .++......+..-|...|+.|+..|+.-.+-...+.|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 87777777655 67777778888888888888888888777766666544
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=2.2e-09 Score=117.42 Aligned_cols=260 Identities=11% Similarity=0.011 Sum_probs=184.1
Q ss_pred ChhHHHHHHHHHHH-----cCChhHHHHHHHhhhhcCCCCCCcc-cccchhHHhh---------ccCchHHHHHHHHHHH
Q 005268 296 DVISWNTLITGYAQ-----NGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYS---------HVGALRQGIKIHARVI 360 (705)
Q Consensus 296 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~ 360 (705)
+...|...+.+-.. .+..++|+.+|++..+ ..|+.. .+..+..++. ..+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44455555554321 1345788999998887 677653 3333333222 2345789999999988
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H
Q 005268 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-T 436 (705)
Q Consensus 361 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 436 (705)
+.. +.+...+..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..+++.++ +.|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhh
Confidence 864 44677888888899999999999999998763 3345688899999999999999999999999 566643 3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACR 513 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 513 (705)
+..++..+...|++++|...+++..+. ..| +...+..+...|...|++++|...++++ +..|+ ...++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999887753 234 3445777888999999999999999887 34455 345566666677
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
..| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788878877764322222233366778888888888777 6666543
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.3e-07 Score=89.94 Aligned_cols=432 Identities=14% Similarity=0.120 Sum_probs=234.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHccCCH
Q 005268 102 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL-INMYAKFGMM 180 (705)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L-i~~y~~~g~~ 180 (705)
..+.+.|++++|+..|.-+.+.. .|+...+..+.-...-.|.+.+|+++-.. .|+....+.| .+.--+.++-
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~k------a~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEK------APKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCcH
Confidence 34556677777777776665533 33444443343333445566666655443 2333333333 3444455555
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCChhhHHHHHHHHHHh
Q 005268 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI-VAQLNDCRNSRSVHGFIMRR 259 (705)
Q Consensus 181 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~ 259 (705)
++-..+-..+.... .---+|.+..-..-.+++|++++++.... .|+-...+.-+.. +.+..-++.+.+++.-..+.
T Consensus 138 k~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 55444444443211 11112222222233456777777766554 2333344443333 34555555566666555554
Q ss_pred cCCCchhHHHHHHHHHHHhc--CCHHHH--HHHHhcCCCCChhHHHHHHHHHHHc-----CChhHHHHHHHhhhhcCCCC
Q 005268 260 GWFMEDVIIGNAVVDMYAKL--GIINSA--CAVFEGLPVKDVISWNTLITGYAQN-----GLASEAIEVFQMMEECNEIN 330 (705)
Q Consensus 260 g~~~~~~~~~~~li~~y~~~--g~~~~A--~~~f~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~ 330 (705)
++.++...|.......+. |+..++ .++-+...+. | -.+.-.++. ...+.|++++-.+.+ +-
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~---~I 284 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMK---HI 284 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHh---hC
Confidence 455555555554444332 332222 1222222111 1 112222222 344667777666554 33
Q ss_pred CCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHhhCC----CCCcch
Q 005268 331 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV-----DMYGKCGRIDDAMSLFYQVP----RSSSVP 401 (705)
Q Consensus 331 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~y~k~g~~~~A~~~~~~~~----~~~~~~ 401 (705)
|... ..++--+.+.+++.+|..+...+.- ..|..+....++ +-......+.-|.+.|+-.- +-|.++
T Consensus 285 PEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 285 PEAR--LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred hHhh--hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 4321 2233345677777777666544211 112222222222 22222334666777776554 233333
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc-CCcchHH-HHHH
Q 005268 402 -WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK-PHLKHYG-CMVD 478 (705)
Q Consensus 402 -~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~-~li~ 478 (705)
-.+|.+.+.-..++++++-.+.....-- ..|..--..+..|.+..|.+.+|.++|-.+. |.+ .+..+|. .|..
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLAR 436 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHH
Confidence 7778888888888999999988888753 3333333456789999999999999997664 333 3445554 4567
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 479 LFGRAGHLGMAHNFIQNMPVRPDASIWGAL-LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
.|.++++.+-|.+++-++..+.+..+.-.+ .+-|.+.+.+--|-++|..+..++| +|..|. |+-....-
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG 506 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAG 506 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHH
Confidence 899999999999999988654455554444 4679999999999999999999998 455443 33333445
Q ss_pred HHHHHHhCCCccCC
Q 005268 558 VRSLARDRGLKKTP 571 (705)
Q Consensus 558 ~~~~m~~~~~~~~~ 571 (705)
+|..+....-++.|
T Consensus 507 ~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 507 LFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHcCCCCCCc
Confidence 66665554443433
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.3e-07 Score=93.96 Aligned_cols=407 Identities=9% Similarity=0.005 Sum_probs=256.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMD-PITVASILPVCARSDNILSGLLIHLYIVKHGLEFN-LFVSNNLINMY 174 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 174 (705)
+-..-.-|.++|.+++|++.|.+.++. .|| ++-|...-.+|...|+++...+.-...++.. |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445566788889999999999988874 677 6667777777788899888888777776643 33 44566666778
Q ss_pred HccCCHHHHHH------HHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHH---CCCCCChhhHHHHHHHHHccCC
Q 005268 175 AKFGMMRHALR------VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ---AGIQPDLLTLVSLTSIVAQLND 245 (705)
Q Consensus 175 ~~~g~~~~A~~------~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~a~~~~~~ 245 (705)
-..|++++|+. +++...... -..++.-..+ ..|....++-.. ..+.|+.....+.+..+...-.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s---~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS---IEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch---hHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888887753 222222111 1112211111 122222222222 1234554444444443321100
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-CCHHHHHHHHhc-------CCCCC---------hhHHHHHHHHHH
Q 005268 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL-GIINSACAVFEG-------LPVKD---------VISWNTLITGYA 308 (705)
Q Consensus 246 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~-------~~~~~---------~~~~~~li~~~~ 308 (705)
. .....+ ...|...-..+=..|... ..++.|...+.+ ....+ ..+.+.....+.
T Consensus 267 ~--------~~~~~~-~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 267 P--------LFDNKS-DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred c--------cccCCC-ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0 000000 011111112222222211 123333333221 11111 122222233355
Q ss_pred HcCChhHHHHHHHhhhhcCCCCCCccc-ccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 005268 309 QNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387 (705)
Q Consensus 309 ~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 387 (705)
-.|+.-.|...|+.... +.|.... |.-+..+|....+.++..+.|..+.+.. +-++.+|---.+++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 67889999999999987 5554333 7777778899999999999999998865 33556666667777778999999
Q ss_pred HHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 388 MSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 388 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
..-|++.. +.+..+|-.+..+.-+.++++++...|++..+. ++--+..|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999877 445556777777777888999999999999986 444456888889999999999999999998874
Q ss_pred CCcCCc---------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 005268 465 GIKPHL---------KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 465 ~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
+.|+. .+--.++-. .-.+++.+|..++++. .+.|. ...+-+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35541 111122211 2338999999999988 56665 5688999999999999999999999987654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=3.6e-07 Score=95.87 Aligned_cols=451 Identities=12% Similarity=0.080 Sum_probs=267.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhh---cCCChH-------------------HHHHHH----HHHHHhCC
Q 005268 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCA---RSDNIL-------------------SGLLIH----LYIVKHGL 160 (705)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~-------------------~a~~~~----~~~~~~g~ 160 (705)
.+..++++.-+......+...+..++..+...+. ..++.+ ++.... .++....+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666665555555555555443321 223333 332221 12222235
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHH-HH
Q 005268 161 EFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV-SL 236 (705)
Q Consensus 161 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 236 (705)
.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|..+++.-....-.|+..+-. ..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 56888899999999999999999999988754 345579999999999999999999998875544345444333 33
Q ss_pred HHHHH-ccCChhhHHHHHHHHHHhcCC---CchhHHHHHHHHHHHhc-----------CCHHHHHHHHhcCC---CCChh
Q 005268 237 TSIVA-QLNDCRNSRSVHGFIMRRGWF---MEDVIIGNAVVDMYAKL-----------GIINSACAVFEGLP---VKDVI 298 (705)
Q Consensus 237 l~a~~-~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~---~~~~~ 298 (705)
-..|. +.+..+++..+-..++..... ......+-.+.-+|... ....++...+++.. ..|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33343 456666666666666552101 11233334444444321 11233444444432 22332
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHH
Q 005268 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDM 377 (705)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~ 377 (705)
+---+.--|+..++.+.|++..++..+ .+-.-+...|..+.-.++..+++..|..+.+..... |. |-.....-+..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 222333446667788888888888777 333335555666666667777888888877766543 21 11111111111
Q ss_pred HHhcCCHHHHHHHHhh--------------------------CC-----CCCcch-HHHHHHHHHhcCChHHHHHHHHHH
Q 005268 378 YGKCGRIDDAMSLFYQ--------------------------VP-----RSSSVP-WNAIISCHGIHGQGDKALNFFRQM 425 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~--------------------------~~-----~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m 425 (705)
-...++.++|...... +. ..|..+ +..+. +... -+.+.+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-c
Confidence 1123344433332211 11 011111 11111 1111 00000000000 1
Q ss_pred HHcCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 426 LDEGVRP--DH------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 426 ~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
...-+.| +. ..|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111222 21 134455567788888899987777665 4445 4456777778889999999999988776
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 497 -PVRPD-ASIWGALLGACRIHGNMELGAV--ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 497 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.+.|+ +.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++.+.|+.+.|...|....+..
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 57776 5588899999999999888888 9999999999999999999999999999999999999887653
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=1.4e-05 Score=82.48 Aligned_cols=454 Identities=13% Similarity=0.114 Sum_probs=201.0
Q ss_pred HHHHHHHcCCChhHHHHHhccCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcC
Q 005268 68 SLLHMYCRFGLANVARKLFDDMPV-----RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 142 (705)
Q Consensus 68 ~ll~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 142 (705)
.-+....+.|++..-++.|++... .....|...+.-.-..|-++-++.+|++.++- .| ..-.--+.-++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhc
Confidence 333444455555555555554321 12234555555555556666666666665542 22 2233334444555
Q ss_pred CChHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHccCCHH---HHHHHHhccCCC--Ce--ehHHHHHHHHHcCC
Q 005268 143 DNILSGLLIHLYIVKHG------LEFNLFVSNNLINMYAKFGMMR---HALRVFDQMMER--DV--VSWNSIIAAYEQSN 209 (705)
Q Consensus 143 ~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~m~~~--~~--~~~~~li~~~~~~g 209 (705)
+++++|.+.+..++... -+.+...|.-|-+..++.-+.- ....+++.+..+ |. ..|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 66666665555544221 1223344444444444432211 222333333331 22 35677777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 005268 210 DPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVF 289 (705)
Q Consensus 210 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f 289 (705)
.+++|.++|++-.+. .....-|+.+.++|+.......+..+- .....++.+.+.. +++-...-|
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~ 326 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARF 326 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHH
Confidence 777777777665543 222333444455444332211111111 0000110111111 112222222
Q ss_pred hcCC---------------CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcc------cccchhHHhhccCc
Q 005268 290 EGLP---------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG------TYVSILPAYSHVGA 348 (705)
Q Consensus 290 ~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------t~~~ll~a~~~~~~ 348 (705)
+.+. ..++..|..-... ..|+..+-...|.+..+ .+.|-.. .|..+.+.|-..|+
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 2221 2244455444332 34566666777776664 2444322 13334444555555
Q ss_pred hHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 005268 349 LRQGIKIHARVIKNCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFR 423 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (705)
++.|+.+|+...+..++.- ..+|....++=.+..+++.|.++.+... +.+.. ..+...+.+-++.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd~~~pvQ~r---- 472 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYDNSEPVQAR---- 472 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhcCCCcHHHH----
Confidence 6666666555555432211 2334444444444555555555554433 11100 0111111110000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CC-C
Q 005268 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VR-P 500 (705)
Q Consensus 424 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~-p 500 (705)
+.-+...|...+..-...|-++....+++.+..-.-..|.. .-...-.+-...-++++.+.+++- + ++ |
T Consensus 473 ------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 473 ------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred ------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 00011223333333444556666666666666442223321 112222334455677777777665 2 22 4
Q ss_pred CH-HHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCc--chhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 501 DA-SIWGALLGACRI---HGNMELGAVASDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 501 ~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
++ .+|++.+.-+.+ ...++.|..+|+++++..|... +.|...+..=-+-|.-..|.++++.+.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 43 367776654432 1256777777777777666321 122333333333455556666665543
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=2.3e-06 Score=88.00 Aligned_cols=492 Identities=11% Similarity=0.115 Sum_probs=286.9
Q ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC--
Q 005268 48 KKIHCSVLKL-GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-- 124 (705)
Q Consensus 48 ~~~~~~~~~~-g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 124 (705)
+..|+..+.. .+.-...+|...+......|-++.+.+++++-..-++.+-+--|..+++.+++++|-+.+.......
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 3444444432 3333445777778888888888899999998777666678888999999999999999998876421
Q ss_pred ----CCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCC--Cc--hhHHHHHHHHHHccCCHHHHHHHHhccCCC--C
Q 005268 125 ----VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE--FN--LFVSNNLINMYAKFGMMRHALRVFDQMMER--D 194 (705)
Q Consensus 125 ----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~ 194 (705)
-+.+...|..+-...++..+.-...++ +.+++.|+. +| -..|++|.+.|.+.|.+++|..+|++-... .
T Consensus 202 ~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred hhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 233455566666666665554443333 223344432 23 467999999999999999999999876542 1
Q ss_pred eehHHHHHHHHHc----------------CCC------hhhHHHHHHHHHHCCC--------CCC---hhhHHHHHHHHH
Q 005268 195 VVSWNSIIAAYEQ----------------SND------PITAHGFFTTMQQAGI--------QPD---LLTLVSLTSIVA 241 (705)
Q Consensus 195 ~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g~--------~p~---~~t~~~ll~a~~ 241 (705)
+.-++.+-+.|++ .|+ ++-.+.-|+.+.+.+. ..| ..+|..-. -.
T Consensus 281 vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l 358 (835)
T KOG2047|consen 281 VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KL 358 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hh
Confidence 2122222222221 121 2233344444433321 011 11221111 11
Q ss_pred ccCChhhHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHH
Q 005268 242 QLNDCRNSRSVHGFIMRRGWFME------DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV-------ISWNTLITGYA 308 (705)
Q Consensus 242 ~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~ 308 (705)
..++..+....+..+++.- .| -...|..+.+.|-..|+++.|+.+|++...-+- .+|..-...-.
T Consensus 359 ~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 2344555666677776652 22 235788899999999999999999998764432 34555555666
Q ss_pred HcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 309 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 309 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
+..+++.|+++.+.... .|.... +. +...+..-++ .+ ..+..+|..+++.--..|-++...
T Consensus 437 rh~~~~~Al~lm~~A~~----vP~~~~----~~-~yd~~~pvQ~-rl---------hrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATH----VPTNPE----LE-YYDNSEPVQA-RL---------HRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred hhhhHHHHHHHHHhhhc----CCCchh----hh-hhcCCCcHHH-HH---------HHhHHHHHHHHHHHHHhccHHHHH
Confidence 77788888888777654 333211 11 1111111111 11 123456666667666777777777
Q ss_pred HHHhhCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---ccCcHHHHHHHHHHhH
Q 005268 389 SLFYQVPRSSSVPWNAII---SCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACS---HSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 389 ~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~a~~~~~~m~ 461 (705)
.+++++.+--+.|=..++ .-+-.+.-++++.++|++-+..--.|+.. .|+..|.-+. ..-.++.|+.+|++..
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 777777643333311111 12234555677777777766654445543 4555444332 2336788888888777
Q ss_pred HhhCCcCCcc--hHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 462 EEFGIKPHLK--HYGCMVDLFGRAGHLGMAHNFIQNMP--VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 462 ~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
+ |.+|... .|-.....=-+-|.-..|+++++++. .++. ...||..|.--...=-+.....+|+++++.-|++
T Consensus 578 ~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 578 D--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS 655 (835)
T ss_pred h--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH
Confidence 5 5555321 12111222234577777888888773 2332 3356666643332222445677888888877754
Q ss_pred cch--hhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 536 VGY--YVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 536 ~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
-.- ..-.+++=.+.|..+.|+.++..-.+.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 322 234567778888888888888765543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.4e-07 Score=91.25 Aligned_cols=433 Identities=13% Similarity=0.115 Sum_probs=241.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH--HHHH--Hc
Q 005268 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL--INMY--AK 176 (705)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L--i~~y--~~ 176 (705)
++-+.++|++++|.+...+....+ +-|...+..-+-+..+.+.+++|..+... .+ -..+++.. =.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 344556677777777777776543 33444555556666667777776633321 11 11111211 2333 36
Q ss_pred cCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCChhhHHHHHHH
Q 005268 177 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSIVAQLNDCRNSRSVHGF 255 (705)
Q Consensus 177 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~ 255 (705)
.++.++|...++.....|..+...-...+-+.|++++|+++|+.+.+.+.+--.. .-..++.+-... .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 6788888888875544444455555566777888888888888886654432211 111222211111 000 0
Q ss_pred HHHhcCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCC-----hh-----HHHHHHHHHHHcCChhHH
Q 005268 256 IMRRGWFME-DVIIGNAVVDMYAKLGIINSACAVFEGL--------PVKD-----VI-----SWNTLITGYAQNGLASEA 316 (705)
Q Consensus 256 ~~~~g~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~~A 316 (705)
+......+. +-..+-...-.+...|++.+|+++++.. ...| .. .---|.-.+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111110111 1222223344566778888888887765 1111 11 112234456778999999
Q ss_pred HHHHHhhhhcCCCCCCcccccch---hHHhhccCchHH--HHHHHH-----------HHHHhCCCCchhHHHHHHHHHHh
Q 005268 317 IEVFQMMEECNEINPNQGTYVSI---LPAYSHVGALRQ--GIKIHA-----------RVIKNCLCFDVFVATCLVDMYGK 380 (705)
Q Consensus 317 ~~~~~~m~~~~~~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~-----------~~~~~g~~~~~~~~~~li~~y~k 380 (705)
..++....+ . -.+|....... |.+...-.++.. ....++ ..+.....-...--+.++.+|.
T Consensus 244 ~~iy~~~i~-~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 244 SSIYVDIIK-R-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHH-h-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999988876 2 23344221111 112221111111 111111 1111111112223355666664
Q ss_pred cCCHHHHHHHHhhCCCCC-cchHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHH
Q 005268 381 CGRIDDAMSLFYQVPRSS-SVPWNAIISCHG--IHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQR 455 (705)
Q Consensus 381 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 455 (705)
+..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|.. +.....+......|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 56677778777777443 233455544432 233577888888887774 4544 344445556788999999999
Q ss_pred HHH--------HhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCh
Q 005268 456 YFH--------MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIWGALLGACRIHGNM 518 (705)
Q Consensus 456 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~ 518 (705)
++. .+.+. +.. +.+..+++.+|.+.++-+-|.+++.+. .-.+. ..+|.-+...-.++|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 44432 333 447778889999988877676666554 11222 22344444455678999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHH
Q 005268 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 558 (705)
++|...++++++.+|++......+..+|+... .+.|..+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999999999999999999999988887653 4455444
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=3.2e-06 Score=89.04 Aligned_cols=435 Identities=12% Similarity=0.141 Sum_probs=234.3
Q ss_pred hCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hH
Q 005268 57 LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI-TV 132 (705)
Q Consensus 57 ~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 132 (705)
..+..|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|....|+.+++.-....-.|+.. .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888999999999999999999999987653 344569999999999999999999988766433234333 34
Q ss_pred HhHHHHhh-cCCChHHHHHHHHHHHHhC--CC--CchhHHHHHHHHHHccC-----------CHHHHHHHHhccCCC---
Q 005268 133 ASILPVCA-RSDNILSGLLIHLYIVKHG--LE--FNLFVSNNLINMYAKFG-----------MMRHALRVFDQMMER--- 193 (705)
Q Consensus 133 ~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~m~~~--- 193 (705)
-..-+.|. +.+..+++..+-..++... .. .....+-.+.-+|...- ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444453 4566777777766666521 11 11222333333332210 112333444443221
Q ss_pred CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 005268 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273 (705)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 273 (705)
|...--.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+..... ++.|......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 111111222234445555555555555555444444444444444445555555555554444332 122211111111
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHH
Q 005268 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
..-...++.++|......+. ..|... .+..+.++-...+++...+.-..+ .|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L----~~we~~-~~~q~~~~~g~~~~lk~~l~la~~-q~---------------------- 606 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKL----ALWEAE-YGVQQTLDEGKLLRLKAGLHLALS-QP---------------------- 606 (799)
T ss_pred hhhhhcccHHHHHHHHHHHH----HHHHhh-hhHhhhhhhhhhhhhhcccccCcc-cc----------------------
Confidence 11122233333322221110 000000 000111111112222222111000 00
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHH---hcCCHHHHHHHHhhCCCCCc------chHHHHHHHHHhcCChHHHHHHHHH
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYG---KCGRIDDAMSLFYQVPRSSS------VPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~---k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
...+.++..+..... +.-..+.....+...+.++. ..|......+...++.++|...+.+
T Consensus 607 -----------~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 607 -----------TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred -----------cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 001111111111111 11111111111111222221 1266677788888899999888888
Q ss_pred HHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHH--HHHhC-CCC
Q 005268 425 MLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHN--FIQNM-PVR 499 (705)
Q Consensus 425 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~ 499 (705)
... +.|-. ..|......+...|.+++|.+.|.... -+.|+ +...+++..++.+.|+..-|.. ++..+ .+.
T Consensus 676 a~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 676 ASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 777 44543 455555567778899999999888765 56774 5678888999999997666655 77766 555
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 500 P-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 500 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
| +...|-.|.....+.|+.+.|-..|.-+.++++.+|.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6 5789999999999999999999999999999987764
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.1e-08 Score=102.40 Aligned_cols=211 Identities=14% Similarity=0.085 Sum_probs=138.9
Q ss_pred CchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHH
Q 005268 347 GALRQGIKIHARVIKNC-LCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALN 420 (705)
Q Consensus 347 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 420 (705)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. +.+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555431 122 23456667777888888888888888765 3445568888888888888888888
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-
Q 005268 421 FFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P- 497 (705)
Q Consensus 421 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~- 497 (705)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888887 56664 56777777788888888888888887643 554322222223345567888888888654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 498 VRPDASIWGALLGACRIHGNMELGAVASDRLF-------EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 498 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
..|+. |.. .......|+..++ ..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.+
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22332 321 2223345555443 2333333 3455666788888999999999999999988887664
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1.5e-08 Score=110.81 Aligned_cols=211 Identities=11% Similarity=-0.010 Sum_probs=163.1
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC
Q 005268 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG---------KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ 414 (705)
Q Consensus 347 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 414 (705)
+++++|...++++++.. +.+...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45688999999998763 224555666655544 2345889999999877 3455668888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcc-hHHHHHHHHHhcCCHHHHHHH
Q 005268 415 GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 492 (705)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56764 5777788899999999999999999875 466532 333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 493 IQNMP--VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 493 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+++.. ..|+ ...+..+...+...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2354 4557778888889999999999999998888888777888888888888 4788877776653
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.2e-08 Score=91.64 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDL 479 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 479 (705)
...|..+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.| +-.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44577789999999999999999999 57776 588888899999999999999999887 4566 45788889999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchH
Q 005268 480 FGRAGHLGMAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 555 (705)
++..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++++|+++.....++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998844443 558888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005268 556 DEVRSLARDRGL 567 (705)
Q Consensus 556 ~~~~~~m~~~~~ 567 (705)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=3.7e-08 Score=95.36 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 375 (705)
...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...+...|+++.|...+....+.. +.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~------ 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD------ 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH------
Confidence 45677777788888888888888887766 3343 2333344444444555555555555444432 11223
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQ 454 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 454 (705)
.+..+...+...|++++|.+.|++.......|. ...+..+..++...|++++|.
T Consensus 101 -------------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 101 -------------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred -------------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 344444555555555555555555554321121 233444455556666666666
Q ss_pred HHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 455 RYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 455 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
+.+....+. .| +...+..+...+...|++++|...+++. .. +++...+..+...+...|+.+.|....+.+...
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655532 22 2345555666666666666666666554 11 223445555556666667777666666655544
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=8.8e-09 Score=96.69 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=157.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k 380 (705)
+-|..+|.+.|.+.+|.+.|+.-.+ ..|-..||..+-.+|.+...+..|..++.+-++. ++-|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 4566677777777777777776655 4455556666667777777777777776666554 34444444555666666
Q ss_pred cCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005268 381 CGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 381 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
.++.++|.++++...+ .++.+...+..+|.-.++++-|+..|+++++.|+. ++..|+.+.-+|.-.+.+|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776653 34444555667777788888888888888888753 5667777777788888888777777
Q ss_pred HHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
++.... .-.|+ .-..+|-.|.......||+..|.+.|+-.+.-+|++..
T Consensus 382 ~RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 665532 11121 11345666666666777888888888888888888888
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+++.|+-+-.+.|+.++|+.++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88888877788888888888887776543
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.2e-06 Score=93.91 Aligned_cols=468 Identities=14% Similarity=0.180 Sum_probs=272.4
Q ss_pred HHHHHHHHHcCCChhHHHHHhccCCC--CCcchHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHH
Q 005268 66 AASLLHMYCRFGLANVARKLFDDMPV--RDSGSWNAM-----ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPV 138 (705)
Q Consensus 66 ~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 138 (705)
+..+.+.+.|.|-...|++.|..+.. +.++ .+.+ +-.|.-.-.++.+++.++.|...+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55667788889999999988887752 2111 1111 23455556788999999999988888887776666665
Q ss_pred hhcCCChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC---------------
Q 005268 139 CARSDNILSGLLIHLYIVKH-----------GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--------------- 192 (705)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------- 192 (705)
|...=..+.-.++|+..... ++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55444444444555443321 2456777778889999999999999888765411
Q ss_pred ----C------------CeehH------HHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-----------hhhHHHHHHH
Q 005268 193 ----R------------DVVSW------NSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-----------LLTLVSLTSI 239 (705)
Q Consensus 193 ----~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~a 239 (705)
| |.+.| .-.|..|++.=++.+.-.+.-.+.......+ .+....+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 1 11111 1134555554444333333322222111100 0111122233
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC--------------------------------------
Q 005268 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-------------------------------------- 281 (705)
Q Consensus 240 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~-------------------------------------- 281 (705)
+.+.+++..-...++..+..| ..|+.++|+|...|....+
T Consensus 848 vEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 344445555555555556665 4566677777666654332
Q ss_pred --------------------------HHHHHHHHhcC----------------C-CCChhHHHHHHHHHHHcCChhHHHH
Q 005268 282 --------------------------INSACAVFEGL----------------P-VKDVISWNTLITGYAQNGLASEAIE 318 (705)
Q Consensus 282 --------------------------~~~A~~~f~~~----------------~-~~~~~~~~~li~~~~~~g~~~~A~~ 318 (705)
.+--.+++.+- + ..|+..-+.-..++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 11111111000 0 1133333444566666777777777
Q ss_pred HHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHh-----------------------CCCCchhHHHHHH
Q 005268 319 VFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-----------------------CLCFDVFVATCLV 375 (705)
Q Consensus 319 ~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----------------------g~~~~~~~~~~li 375 (705)
+++++.-....-.....+-.++-.-+-..+.....++.+++-.. .+..+....+.|+
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI 1085 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 77776531111111111111111111111112222222111111 1122222223333
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 455 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 455 (705)
+ ..+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+
T Consensus 1086 e---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 2 12344444444444333 334999999999999999999877433 356789999999999999999999
Q ss_pred HHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 456 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 456 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
++...+++ .-+|. .=+.|+-+|++.+++.|-++++. -||..-.....+-|...|.++.|.-+|. +
T Consensus 1155 yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~ 1219 (1666)
T KOG0985|consen 1155 YLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------N 1219 (1666)
T ss_pred HHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------H
Confidence 99777655 55665 44679999999999999998884 4788888889999999999999988887 4
Q ss_pred cchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 536 VGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
.+.|..|+..+...|.+..|...-+++
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 466777888888888887776544443
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.1e-06 Score=83.70 Aligned_cols=387 Identities=10% Similarity=0.008 Sum_probs=227.0
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHH-HHHHcCC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005268 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII-AAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240 (705)
Q Consensus 163 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 240 (705)
+...-...+..|-..++-++|.....+.+..-...-+.|+ .-+-+.| +-.++.--+++...... ..+ ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MAL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHH-HHHHHH
Confidence 4455566788888889999999999888775444444444 3333333 32233333344333211 000 011111
Q ss_pred HccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc--CCHHHHHHHHhcC-----CCCChhHHHHHHHHHHHcCCh
Q 005268 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL--GIINSACAVFEGL-----PVKDVISWNTLITGYAQNGLA 313 (705)
Q Consensus 241 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~ 313 (705)
.+.+ +.....--..+-+.. .++.......-+.+|+.+ ++-..|...|-.+ ...|+.....+...+...|+.
T Consensus 171 l~l~-v~g~e~~S~~m~~~~-~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAAT-VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHh-hcchhhhhhhhhhee-cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 1110 000011111111111 333333334445555443 4444444333222 234777788888888888999
Q ss_pred hHHHHHHHhhhhcCCCCCCcccccch-hHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 005268 314 SEAIEVFQMMEECNEINPNQGTYVSI-LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392 (705)
Q Consensus 314 ~~A~~~~~~m~~~~~~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 392 (705)
++|+..|++.+. +.|+..+-.-+ .-.+...|+++....+...+.... +.....|-.-........+++.|+.+-+
T Consensus 249 ~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 249 FQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999888888876 66654432111 112345677777777666665432 1111112222223334567888888877
Q ss_pred hCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC
Q 005268 393 QVPRSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 468 (705)
Q Consensus 393 ~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 468 (705)
+..+.+... +-.-...+.+.|++++|.-.|+..+. +.|.. ..|..|+.+|...|...+|.-.-+...+. +..
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~ 400 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQN 400 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhc
Confidence 766544444 33334567778888888888888887 56644 68888888888888888888766655432 233
Q ss_pred CcchHHHHH-HHHHhc-CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 469 HLKHYGCMV-DLFGRA-GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 469 ~~~~~~~li-~~~~~~-g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
+..+.+-+. ..+.-. .--++|..++++. .++|+ ....+.+...|...|..+.++.++++.+...|+ ...++.|++
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd 479 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGD 479 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHH
Confidence 333443332 222222 2345688888776 57777 446677777888888888899999988888884 467888888
Q ss_pred hhhhcCCcchHHHHHHHHHhC
Q 005268 545 IYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 545 ~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.+.....+.+|...|..+...
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhc
Confidence 888888888888888876654
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.9e-06 Score=79.48 Aligned_cols=442 Identities=12% Similarity=0.049 Sum_probs=260.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 005268 101 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 180 (705)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 180 (705)
+.-+..+.++..|+.+++--...+-.-...+-.-+...+...|++++|...+..+... -.++..++-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4556677888899988877654332222222223334456899999999999988774 466777777788777788999
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhc
Q 005268 181 RHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 260 (705)
Q Consensus 181 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 260 (705)
.+|..+-...++ ++..-..|...-.+.++-++-+.+-..+... ...-.++.+.......+++|..++..+...+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999988776654 2222333444555667766666665555432 1122234444444556788888888877654
Q ss_pred CCCchhHHHH-HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc
Q 005268 261 WFMEDVIIGN-AVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336 (705)
Q Consensus 261 ~~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 336 (705)
|+-...| -+.-.|.|..-++-+.++++--. ..++++-|.......+.=....|..-.+++.. .+-. .|
T Consensus 182 ---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad-N~~~----~~ 253 (557)
T KOG3785|consen 182 ---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELAD-NIDQ----EY 253 (557)
T ss_pred ---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh-cccc----cc
Confidence 2322222 23445677777777766654322 23455555555444443233333333333332 1110 01
Q ss_pred cchhHHhh----ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc
Q 005268 337 VSILPAYS----HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 412 (705)
Q Consensus 337 ~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 412 (705)
.-.-..|. --..-+.|.+++--+.+. -|. .--.|+-.|.+.+++++|..+.....+..+.-|-.-.-.++..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHh
Confidence 11111111 112335566665554443 222 2234566789999999999999888755544443333334444
Q ss_pred CC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcC
Q 005268 413 GQ-------GDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484 (705)
Q Consensus 413 g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 484 (705)
|+ ..-|.+.|+-.-+++..-|.+ --.++.+++.-...+++.+-+++++..- =..-|... -.+..++...|
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atg 407 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATG 407 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhc
Confidence 44 233444554444444444432 2234444555566789999999888642 23333333 35788999999
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHhccC-CCC-cchhhhhhhhhhhcCCcchHHHHH
Q 005268 485 HLGMAHNFIQNMP--VRPDASIWGALLGAC-RIHGNMELGAVASDRLFEVD-SEN-VGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 485 ~~~~A~~~~~~~~--~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
++.+|+++|-+.. .-.|..+|.+++.-| .+.+..+.|..++ ++.+ |.+ -+....+++-|.+++.+--|.+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997773 113677887777655 5667777776654 4443 322 233456789999999999999999
Q ss_pred HHHHhCC
Q 005268 560 SLARDRG 566 (705)
Q Consensus 560 ~~m~~~~ 566 (705)
+.+....
T Consensus 485 d~lE~lD 491 (557)
T KOG3785|consen 485 DELEILD 491 (557)
T ss_pred hHHHccC
Confidence 9887654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.5e-07 Score=94.23 Aligned_cols=217 Identities=9% Similarity=-0.022 Sum_probs=142.8
Q ss_pred CChhHHHHHHHhhhhcCCCCCCc--ccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 311 GLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
+..+.++.-+.++.......|+. ..|......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555312233321 234444555666677777777777766653 345678888888999999999999
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 005268 389 SLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 465 (705)
Q Consensus 389 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 465 (705)
..|++..+ .+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988753 3445688888889999999999999999998 466654222222234557789999999976553 2
Q ss_pred CcCCcchHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 466 IKPHLKHYGCMVDLFGRAGHLG--MAHNFIQNM-PV----RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 466 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
..|+...+ .++..+ .|++. ++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|.+
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 34443322 333333 44443 333333322 11 12 24579999999999999999999999999999754
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.9e-08 Score=94.46 Aligned_cols=190 Identities=10% Similarity=0.093 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccC
Q 005268 372 TCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS-LLTACSHSG 448 (705)
Q Consensus 372 ~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g 448 (705)
+.+..+|.+.|.+.+|...|+.-. .+-+.+|-.|-..|.+..++..|+.+|.+-++ ..|-.+||.. ....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 557778888899999998888765 56677888888999999999999999999988 5777777654 456788889
Q ss_pred cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 005268 449 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVAS 525 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 525 (705)
..++|.++++...+. -..+++...|+...|.-.|+.+-|+.+++++ +. -++..|+.+.-.|.-.++++.++..|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999988754 2336778888888899999999999999876 33 36778899999999999999999999
Q ss_pred HHHhccC--CC-CcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 526 DRLFEVD--SE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 526 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
++++..- |+ .+..|..|+.+....|++.-|.+.|+.....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9998753 33 35668889999999999999999998877654
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=3.8e-07 Score=95.22 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=113.3
Q ss_pred HHHHHHHcCChhHHHHHHHhhhhc-----CCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCC----CCchhHHH
Q 005268 303 LITGYAQNGLASEAIEVFQMMEEC-----NEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCL----CFDVFVAT 372 (705)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~ 372 (705)
+...|...+++++|..+|+++... ....| -..++..|..+|.+.|++++|...++.+.+.-- .....+-.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555566666666666655430 01112 123444555556667777776666665543200 00111100
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHh
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE---GVRPDH----ITFVSLLTACS 445 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~ 445 (705)
. .+.++..+...+++++|..++++..+. -+.++. -+++.+...|.
T Consensus 327 ~----------------------------l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 327 Q----------------------------LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred H----------------------------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 0 223333444444455555444443321 122222 36777777777
Q ss_pred ccCcHHHHHHHHHHhHHhh----C-CcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHH
Q 005268 446 HSGLVSEGQRYFHMMQEEF----G-IKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIWGALLG 510 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~ 510 (705)
+.|++++|.++|+++.+.. + ..+ ....++.|...|.+.++.++|..+|.+. +..|+ ..+|..|..
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 7888888877777766542 1 111 1345667777788888887777777655 23455 458899999
Q ss_pred HHHhcCChhHHHHHHHHHhc
Q 005268 511 ACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~ 530 (705)
.|...|+++.|+++.+.+..
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 99999999999999888764
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=5.2e-06 Score=87.99 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=143.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 379 (705)
.-+...|-..|++++|++..++..+ ..|+ ...|..-...+-+.|++.+|.+..+.+.... .-|.++-+..+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 4456667778888888888887776 5565 3345556667778888888888888777654 346667777778888
Q ss_pred hcCCHHHHHHHHhhCCCCCcch----------H--HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC------------
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVP----------W--NAIISCHGIHGQGDKALNFFRQMLDE--GVRPD------------ 433 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~----------~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~------------ 433 (705)
++|++++|.+++....+.+..+ | .....+|.+.|++..|+.-|....+. .+.-|
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 8899999988888777655322 3 33466788888888888777666542 11222
Q ss_pred -HHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhhCCcCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 005268 434 -HITFVSLLTACSHSGL-------VSEGQRYFHMMQEEFGIKPHLKH-----------YGCMVDLF---GRAGHLGMAHN 491 (705)
Q Consensus 434 -~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------~~~li~~~---~~~g~~~~A~~ 491 (705)
..+|..++...-+... ...|.+++-.+............ -..+-.-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233333332221111 12333333333221000000000 00000000 01111111111
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcc
Q 005268 492 FIQ-----------NM----P--VRPDASIWGALLGACRIHG-NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553 (705)
Q Consensus 492 ~~~-----------~~----~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (705)
.-. +. + ..||+. ..-+.... =+++|.++++-+.+..|++..++..--.+|.+.|++-
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 100 00 1 112221 11122333 4588999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 005268 554 GVDEVRS 560 (705)
Q Consensus 554 ~a~~~~~ 560 (705)
-|.+.+.
T Consensus 509 LaLqaL~ 515 (517)
T PF12569_consen 509 LALQALK 515 (517)
T ss_pred HHHHHHH
Confidence 8876654
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.87 E-value=5.2e-05 Score=78.63 Aligned_cols=435 Identities=13% Similarity=0.106 Sum_probs=246.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005268 47 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLE 123 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (705)
+.++...+++ +++....+.....-.+...|+.++|......-.. ++.++|..+.-.+-...++++|++.|......
T Consensus 26 gLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 26 GLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 5555555555 3333334444333345567888888888776554 45567888887777888899999999888764
Q ss_pred CCCCChh-hHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHH
Q 005268 124 GVSMDPI-TVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII 202 (705)
Q Consensus 124 g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 202 (705)
.||.. .+.-+--.=++.++++..........+. .......|...+
T Consensus 105 --~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------------------------------~~~~ra~w~~~A 150 (700)
T KOG1156|consen 105 --EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------------------------------RPSQRASWIGFA 150 (700)
T ss_pred --CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------------------------hhhhHHHHHHHH
Confidence 34432 2222111112222222222222211111 112345677777
Q ss_pred HHHHcCCChhhHHHHHHHHHHCC-CCCChhhHHHHHH------HHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 005268 203 AAYEQSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTS------IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275 (705)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~ 275 (705)
.++.-.|+...|..++++..+.. -.|+...|..... .....|.++.+.+........ +.......-.-.+.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 77777777777777777765543 2455555443322 233455555555544433322 23334445566778
Q ss_pred HHhcCCHHHHHHHHhcCCCC--ChhHHHHH-HHHHHHcCChhHHH-HHHHhhhhcCCCCCCcc-cccchhHHhhccCchH
Q 005268 276 YAKLGIINSACAVFEGLPVK--DVISWNTL-ITGYAQNGLASEAI-EVFQMMEECNEINPNQG-TYVSILPAYSHVGALR 350 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~ 350 (705)
+.+.+++++|..++..+..+ |...|... ..++.+-.+.-+++ .+|....+ ..|... ....-++......-.+
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE---KYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cCcccccchhccHHHhCcchhHH
Confidence 89999999999999987644 44444443 44443344444455 66666544 222111 1111122222233344
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhCC--------------CCCcchHHH--HHHHHH
Q 005268 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID---D-AMSLFYQVP--------------RSSSVPWNA--IISCHG 410 (705)
Q Consensus 351 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~---~-A~~~~~~~~--------------~~~~~~~~~--li~~~~ 410 (705)
....++...++.|+++ ++..+...|-.-...+ + +..+...+. .|....|.. ++..|-
T Consensus 306 ~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 4555666677777654 3344444443211111 1 111222221 122222544 677788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 489 (705)
..|+++.|+.+++..+. -.|+.+ -|..=...+.+.|++++|..++++..+- -.||...-+--+.-..|+.+.++|
T Consensus 383 ~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHH
Confidence 89999999999999998 577765 5555567899999999999999988642 345555544566677899999999
Q ss_pred HHHHHhCCCCC-C--------HHHHHHH--HHHHHhcCChhHHHHHHHHH
Q 005268 490 HNFIQNMPVRP-D--------ASIWGAL--LGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 490 ~~~~~~~~~~p-~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~ 528 (705)
.++.....-.- + .-.|-.+ ..+|.+.|++.+|.+-+..+
T Consensus 459 ~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 459 EEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 98876663111 1 1234333 24677888887777665544
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=7e-06 Score=88.64 Aligned_cols=510 Identities=13% Similarity=0.022 Sum_probs=263.2
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005268 47 GKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRL 122 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (705)
+..++..+....+.++ ...|..|...|+..-+...|.+.|+..-+ .|..+|-.....|++..+++.|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 4555555555554444 45788899999888889999999987653 5677899999999999999999998433322
Q ss_pred CC-CCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHH-
Q 005268 123 EG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS- 200 (705)
Q Consensus 123 ~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~- 200 (705)
.. ...-...|....-.+...++...+..-++...+..+ -|...|..|..+|.++|++..|.++|++...-++.+|-.
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11 001112233344445677888888888888887653 378889999999999999999999998776544333222
Q ss_pred --HHHHHHcCCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHHHccCCh-------hhHHHHHHHHHHhcCCCch
Q 005268 201 --IIAAYEQSNDPITAHGFFTTMQQA------GIQPDLLTLVSLTSIVAQLNDC-------RNSRSVHGFIMRRGWFMED 265 (705)
Q Consensus 201 --li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~-------~~a~~i~~~~~~~g~~~~~ 265 (705)
....-+..|.+.+|+..+...... +...-..++..+...+...|-. +.+.+.+.-..... ...+
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~-~~~~ 712 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS-LQSD 712 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhhh
Confidence 122234456667766666554321 1111111222111111111111 11111111111111 0111
Q ss_pred hH--------------------------------------------------------------HHHHHHHHHHh----c
Q 005268 266 VI--------------------------------------------------------------IGNAVVDMYAK----L 279 (705)
Q Consensus 266 ~~--------------------------------------------------------------~~~~li~~y~~----~ 279 (705)
.. .|..|+.-|.+ +
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 11 11111111111 0
Q ss_pred C----CHHHHHHHHhcC---CCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHH
Q 005268 280 G----IINSACAVFEGL---PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQ 351 (705)
Q Consensus 280 g----~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~ 351 (705)
| +...|...+... ...+...||.|.-. ...|.+.-|..-|-+-.. ..| ...+|..+.-.|....+++.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEecccHHH
Confidence 0 111222222211 12233344443332 222333333333333222 222 33444444444555556666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 005268 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--------RSSSVPWNAIISCHGIHGQGDKALNFFR 423 (705)
Q Consensus 352 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (705)
|...+....... +.+...+-.........|+.-++..+|..-. -++..-|-.-..-..++|+.++-+..-+
T Consensus 869 A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 869 AEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 666665554432 2223333222222334555555555554311 1222224333344455565554443333
Q ss_pred HHHH---------cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHH----HHHHHhcCCHHHHH
Q 005268 424 QMLD---------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAH 490 (705)
Q Consensus 424 ~m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~ 490 (705)
+.-. .|.+.+.+.|........+.+.+..+.+...+...-...+-+...|+.. ...+...|.++.|.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 3221 1233334667777777777777777777666554322223344455533 34455567777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh---hhhhhhhhcCCcchHHHHHHHHHh
Q 005268 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV---LMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 491 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.-+...+..-|..+-.+-+.. .-.++++++.+.|++++.+--++....+ .++.....++.-+.|....-+...
T Consensus 1028 ~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1028 KASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 666555444444444444444 4467899999999999987644433222 344444556667777765555443
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.5e-07 Score=95.73 Aligned_cols=219 Identities=15% Similarity=0.105 Sum_probs=171.1
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 005268 344 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALN 420 (705)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 420 (705)
.+.|++..|.-.|+.+++.. +-+...|.-|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56678888888888888764 44677787787777778887888888877663 445556777778888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHH--------HHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 005268 421 FFRQMLDEGVRPDHITFVS--------LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 421 ~~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 492 (705)
.|+.-+... |...-... .-........+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998887632 21110000 00122333445666777777776667678888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 493 IQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 493 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
|+.+ ..+| |..+||-|...++...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-.+...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 5666 57799999999999999999999999999999999888999999999999999999988777654
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.0001 Score=79.80 Aligned_cols=222 Identities=13% Similarity=0.134 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 376 (705)
...|+.+..+-.+.|...+|++-|-+.. |+..|.-++..+.+.|.+++-..++..+.+..-+|. +-+.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHH
Confidence 3568888888888888888888775542 556788888899999999988888888877765554 3457888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005268 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 456 (705)
+|+|.+++.+-++.+ ..+|..-...+..-|...|.++.|.-+|... .-|..|...+...|.++.|...
T Consensus 1175 AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 888888887766654 3455555566666677777777776665433 3356666666667776666554
Q ss_pred HHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 457 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
-+.. .+..+|.-+..++...+.+.-|.- ..+.+--.+.-..-|+.-|...|-+++-+.+++..+.++--..
T Consensus 1243 aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-------NSTKTWKEVCFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-------cchhHHHHHHHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 3222 233455555555554444332211 1111111233345666777777777877777777777776666
Q ss_pred chhhhhhhhhhh
Q 005268 537 GYYVLMSNIYAN 548 (705)
Q Consensus 537 ~~~~~l~~~~~~ 548 (705)
+.|.-|+-+|++
T Consensus 1314 gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1314 GMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=4.3e-06 Score=86.95 Aligned_cols=280 Identities=18% Similarity=0.149 Sum_probs=151.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 005268 100 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179 (705)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 179 (705)
.|..|....+|++|+.+-+. .|.+.-...-.+-+.++...|+-+.|-++- .+.--.-+-|..|.+.|.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~ 630 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCC
Confidence 34445555555555555332 122211222233444455555544443332 111122456788999998
Q ss_pred HHHHHHHHhc--cCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 005268 180 MRHALRVFDQ--MMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 257 (705)
Q Consensus 180 ~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 257 (705)
...|.+.-.. ....|......+..++.+..-+++|-++|+++.. +...+..+.+-..+..|.++-+..
T Consensus 631 p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa- 700 (1636)
T KOG3616|consen 631 PAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA- 700 (1636)
T ss_pred chHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-
Confidence 8877765422 2223544555555666666666667667666532 122233333333344444443332
Q ss_pred HhcCCCchhHH-HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc
Q 005268 258 RRGWFMEDVII-GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 336 (705)
Q Consensus 258 ~~g~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 336 (705)
+|..++. -.+..+-+...|+++.|..-|-+.. ..-..|.+-....+|.+|+.+++.++. .+.-+.-|
T Consensus 701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqd---qk~~s~yy 768 (1636)
T KOG3616|consen 701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD---QKTASGYY 768 (1636)
T ss_pred ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh---hccccccc
Confidence 3333322 2334445556677777776664321 112234455667788888888887766 22334446
Q ss_pred cchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--chHHHHHHHHHhcCC
Q 005268 337 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS--VPWNAIISCHGIHGQ 414 (705)
Q Consensus 337 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~ 414 (705)
..+...|++.|+++.|.++|.+. ..++-.|+||.+.|++++|.++-.+...|.. ++|-+-..-+-.+|+
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence 66777788888888888877643 2345567888888888888887776654432 335555555555666
Q ss_pred hHHHHHHH
Q 005268 415 GDKALNFF 422 (705)
Q Consensus 415 ~~~A~~~~ 422 (705)
+.+|.++|
T Consensus 840 f~eaeqly 847 (1636)
T KOG3616|consen 840 FAEAEQLY 847 (1636)
T ss_pred hhhhhhee
Confidence 66555554
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=0.00011 Score=86.62 Aligned_cols=364 Identities=10% Similarity=0.036 Sum_probs=158.5
Q ss_pred HHHHHccCCHHHHHHHHhccCCCCeeh--HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhh
Q 005268 171 INMYAKFGMMRHALRVFDQMMERDVVS--WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 248 (705)
Q Consensus 171 i~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 248 (705)
...|...|++.+|..........+... ...........|+.+.+...+..+.......+..........+...++.+.
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344566677777766665554432211 111122344566777666666655221111122222223333445566666
Q ss_pred HHHHHHHHHHhcCC-----Cc--hhHHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCh----hHHHHHHHHHHHcCCh
Q 005268 249 SRSVHGFIMRRGWF-----ME--DVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDV----ISWNTLITGYAQNGLA 313 (705)
Q Consensus 249 a~~i~~~~~~~g~~-----~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~ 313 (705)
+......+...-.- ++ .......+...+...|++++|...+++.. ..+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 66666655432100 00 11111222334445566666665555422 1111 1233344444555666
Q ss_pred hHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005268 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 393 (705)
Q Consensus 314 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 393 (705)
++|...+.+... ..-.... ..........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~-~~~~~g~------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQ-MARQHDV------------------------------YHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHH-HHhhhcc------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666655555443 1000000 000111223333344444555544444433
Q ss_pred CCC-------CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHH
Q 005268 394 VPR-------SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDE--GVRPD--HITFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 394 ~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
... .+ ...+..+...+...|++++|...+++.... ...|. ...+..+.......|+.++|.+.+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 220 00 011222333344456666665555554432 01111 1223333344555666666666665
Q ss_pred HhHHhhCCcCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 005268 459 MMQEEFGIKPHLKHY-----GCMVDLFGRAGHLGMAHNFIQNMPVR--PDA----SIWGALLGACRIHGNMELGAVASDR 527 (705)
Q Consensus 459 ~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 527 (705)
.......-......+ ......+...|+.+.|...+...... ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 553321110000000 01123334466666666666554211 011 1133445556666677777776666
Q ss_pred HhccCC------CCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 528 LFEVDS------ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 528 ~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+++... ....++..++.+|...|+.++|...+.++.+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655321 11223455666667777777777776666654
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=5.8e-06 Score=78.69 Aligned_cols=310 Identities=15% Similarity=0.175 Sum_probs=175.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHH---HHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII---AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 243 (705)
.--|-..+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+..+ ++||-..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A---------- 108 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA---------- 108 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH----------
Confidence 334556666778889999999888888888777764 567788888888887777766 35552211
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 005268 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323 (705)
Q Consensus 244 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (705)
-++ -...+.|.|.++.|..-|+.+...+.. -+....++.+.-..++-..+.
T Consensus 109 ------------RiQ-------------Rg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~--- 159 (504)
T KOG0624|consen 109 ------------RIQ-------------RGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLV--- 159 (504)
T ss_pred ------------HHH-------------hchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHH---
Confidence 011 112355667777777776665533220 001111111111111111111
Q ss_pred hhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcc
Q 005268 324 EECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSV 400 (705)
Q Consensus 324 ~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~ 400 (705)
..+..+...|+...++.....+++. .+-|...+..-..+|...|++..|+.-++... ..+..
T Consensus 160 --------------~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 160 --------------QQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred --------------HHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 1222234456666666666666654 23466666666777777777777766555443 44445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HH---HH---H------HHHhccCcHHHHHHHHHHhHHhhCCc
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT-FV---SL---L------TACSHSGLVSEGQRYFHMMQEEFGIK 467 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~---~l---l------~a~~~~g~~~~a~~~~~~m~~~~~~~ 467 (705)
...-+-..+...|+.+.++...++-++ +.||... |. .| . ......++|.++.+-.+...+. .
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---e 299 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---E 299 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---C
Confidence 555566666777888888877777777 6677531 11 11 0 1122344555555555444432 3
Q ss_pred CC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 468 PH-----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 468 p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
|. ...+..+-..+...|++-+|++...+. .+.|| +.++.--..+|....+++.|+.-|+++.+.+|+|..
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 33 122333445556667777777666554 34554 455555556666667777777777777777776643
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=4.7e-06 Score=88.32 Aligned_cols=280 Identities=13% Similarity=0.164 Sum_probs=169.4
Q ss_pred HHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCH
Q 005268 203 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 282 (705)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 282 (705)
..+...|++++|++.+.+-... . .....+.......|.+.|+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I-----------------------------------~Dk~~~~E~rA~ll~kLg~~ 54 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--I-----------------------------------LDKLAVLEKRAELLLKLGRK 54 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--C-----------------------------------CCHHHHHHHHHHHHHHcCCH
Confidence 4456778888888888664332 2 23333344444455555555
Q ss_pred HHHHHHHhcCCCC---ChhHHHHHHHHHHHc-----CChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCch-HHHH
Q 005268 283 NSACAVFEGLPVK---DVISWNTLITGYAQN-----GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL-RQGI 353 (705)
Q Consensus 283 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~-~~a~ 353 (705)
++|..++..+... |..-|..+..+.... ...+...++|+++.. .-|.......+.-.+.....+ ..+.
T Consensus 55 ~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 55 EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHH
Confidence 5555555544422 222233333333111 245566677777765 335433332222122221122 3445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------CCCcchH--HHHHHHHHhcC
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP------------------RSSSVPW--NAIISCHGIHG 413 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~------------------~~~~~~~--~~li~~~~~~g 413 (705)
.+....++.|+++ +++.|-..|......+-..+++.... .|....| .-+...|...|
T Consensus 132 ~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 132 EYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 5566667777654 55666666665544444444444321 1111224 55677788899
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHH
Q 005268 414 QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHN 491 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 491 (705)
++++|+++.++.++ ..|+.+ .|..-...+-+.|++++|.+..+.... +.+ |...-+-.+..+.|+|++++|.+
T Consensus 209 ~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 209 DYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999 578754 677778889999999999999988763 444 55666667788899999999999
Q ss_pred HHHhCCC---CC--C----HHHH--HHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 492 FIQNMPV---RP--D----ASIW--GALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 492 ~~~~~~~---~p--~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
.+..... .| | ...| .-...+|.+.|++..|++.|..+.+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8876631 12 1 1234 3345688899999999988877654
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=1.1e-05 Score=83.37 Aligned_cols=384 Identities=14% Similarity=0.136 Sum_probs=185.1
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHH
Q 005268 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGF 217 (705)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 217 (705)
..+++..+....+.+++. .+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345566666666666652 222333332222233455777777777665544 3567788888777788888999998
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcC---CC
Q 005268 218 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL---PV 294 (705)
Q Consensus 218 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~ 294 (705)
|+..... .||.. .++.-|.-.-++.|+++.....-... ..
T Consensus 98 y~nAl~~--~~dN~-----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALKI--EKDNL-----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHhc--CCCcH-----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 8887764 33322 22222222222222222222221111 12
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhH------HhhccCchHHHHHHHHHHHHhCCCCch
Q 005268 295 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP------AYSHVGALRQGIKIHARVIKNCLCFDV 368 (705)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~~ 368 (705)
.....|..++.++.-.|+...|..++++..+...-.|+...+..... .....|.++.+.+.+...... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 23345555555555566666666665555542212233333322111 122334444444443332221 11112
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--hHHH-HHHHHHhcC--------------------------------
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV--PWNA-IISCHGIHG-------------------------------- 413 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~--~~~~-li~~~~~~g-------------------------------- 413 (705)
..--.-.+.+.+.+++++|..++..+..+++. -|+. +..++.+-.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN 299 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC
Confidence 22233344555556666666666555432222 2222 222221111
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CC------------cCCc--chHHH
Q 005268 414 ---QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GI------------KPHL--KHYGC 475 (705)
Q Consensus 414 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~------------~p~~--~~~~~ 475 (705)
..+..-.++..+++.|++|--..+.++ +-.-...+--.++.-.+.... |- +|.. .++-.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 122233344455555554433333222 222221111111111111100 00 2222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcc
Q 005268 476 MVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (705)
++..+-+.|+++.|...++.+ ...|+.+ .|-.-...+...|++++|...++++.+++-.|-.....-++-..++.+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 666777778888888877766 3345533 34444566777778888888888877777544333334555556677778
Q ss_pred hHHHHHHHHHhCC
Q 005268 554 GVDEVRSLARDRG 566 (705)
Q Consensus 554 ~a~~~~~~m~~~~ 566 (705)
+|.++..+..+.|
T Consensus 457 eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 457 EAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhhhcc
Confidence 8877777766555
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00032 Score=72.20 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 005268 481 GRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDR 527 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 527 (705)
.|.|+-++|..+++++ . .++|..+...++.+|++. |.+.|+.+-++
T Consensus 469 lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 4556666666666666 2 234555666666666554 35555555444
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=7e-05 Score=78.25 Aligned_cols=259 Identities=14% Similarity=0.174 Sum_probs=158.2
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhH--HHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHH
Q 005268 276 YAKLGIINSACAVFEGLPVKDVIS--WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
-.....+.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|.+.-. ++-.|..|.+.|+++.|.
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHH
Confidence 344556666666766666554432 55666667777777777777755432 334566677777777666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
++-.+. .|....+..|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+++.++- .|+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chh
Confidence 554433 23344555666666666778888888888877777664 366777888888877776653 333
Q ss_pred H--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHH
Q 005268 434 H--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR----PDASIWGA 507 (705)
Q Consensus 434 ~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~ 507 (705)
. .|...+..-+...|++..|..-|-+.. -|.+-+++|-..+.+++|.++-+.-.-. .-...|.-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 2 466666677777888888877664432 3556677888888888888777654211 11223322
Q ss_pred HH------HHHHhcCChhHHHHHHH------HHhc-----cCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 508 LL------GACRIHGNMELGAVASD------RLFE-----VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 508 ll------~~~~~~g~~~~a~~~~~------~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
-+ ..+-++|-++.|+...- -+++ ..-.-+..+..++--+-..|++++|.+-+-..++.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 22 23345555555544322 1111 112234566677777788899999987777666553
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=5.7e-06 Score=74.84 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTA 443 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 443 (705)
..++..+...|.+.|..+.|.+.|++.. +.+-...|....-+|.+|++++|...|++....-.-|. ..||..+.-+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 3344555555555555555555555443 23333345555555666666666666666665322222 2356666555
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 520 (705)
..+.|+.+.|.++|++..+. .| .....-.|.......|++.+|..+++.. ...++..+.-..|..-...||.+.
T Consensus 149 al~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 56666666666666665532 33 2345555666666667777776666655 223555555555556666677666
Q ss_pred HHHHHHHHhccCCCCc
Q 005268 521 GAVASDRLFEVDSENV 536 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~ 536 (705)
+-+.-.++...-|...
T Consensus 226 a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 226 AQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHhCCCcH
Confidence 6666666666666443
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=1.2e-05 Score=83.63 Aligned_cols=257 Identities=12% Similarity=-0.025 Sum_probs=141.3
Q ss_pred HHHHHcCChhHHHHHHHhhhhcCCCCCCcc-cccchhHHhhc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 305 TGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379 (705)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 379 (705)
..+...|++++|.+.+++..+ ..|+.. .+.. ...+.. .+....+.+.+... ....+........+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLD---DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHH
Confidence 345566777777777777766 345332 2221 111222 23333343333331 1111222334445556777
Q ss_pred hcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHH
Q 005268 380 KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPDH--ITFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 453 (705)
..|++++|...+++.. +.+...+..+...|...|++++|+..+++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 7888888888887765 33444567777778888888888888887776421 1222 2344566677788888888
Q ss_pred HHHHHHhHHhhCCcCCcchH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHH
Q 005268 454 QRYFHMMQEEFGIKPHLKHY-G--CMVDLFGRAGHLGMAHNF---IQNM-PVRPD---ASIWGALLGACRIHGNMELGAV 523 (705)
Q Consensus 454 ~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~ 523 (705)
..+++.........+..... + .+...+...|..+.+.+. .... +..|+ .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 88887764321111111111 1 223333344432222222 1111 11011 1222345566778888888888
Q ss_pred HHHHHhccC-C--------CCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 524 ASDRLFEVD-S--------ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 524 ~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.++.+.... + .........+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888765422 1 123444567788899999999999998887653
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.7e-05 Score=80.37 Aligned_cols=214 Identities=12% Similarity=0.109 Sum_probs=130.8
Q ss_pred chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcch---HH-------HHHH
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WN-------AIIS 407 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~---~~-------~li~ 407 (705)
.+.++..+..+++.+.+-+...+... .++.-++....+|...|...+....-+...+.+-.. |+ .+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34445555566666777666666654 455556666677777777666665554443322222 22 2334
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcc-hHHHHHHHHHhcCCH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHL 486 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~ 486 (705)
+|.+.++++.|+..|.+.+.....|+..+ +....+++........ -+.|... -.-.=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 56666777888888877766544444321 1222233333322221 2233221 011114556677888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+.+..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888776 3334 4667777777888888888888888888888888888887777777778888888888877665
Q ss_pred C
Q 005268 565 R 565 (705)
Q Consensus 565 ~ 565 (705)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 5
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.00062 Score=72.46 Aligned_cols=28 Identities=4% Similarity=0.065 Sum_probs=24.9
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.|..|+..|....+|..|-+.++.|..+
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 4677899999999999999999999876
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=5.2e-08 Score=60.94 Aligned_cols=34 Identities=38% Similarity=0.590 Sum_probs=28.3
Q ss_pred hCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCC
Q 005268 57 LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 90 (705)
Q Consensus 57 ~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~ 90 (705)
.|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3.1e-05 Score=72.41 Aligned_cols=403 Identities=11% Similarity=0.048 Sum_probs=199.9
Q ss_pred hHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--CCeehHHH-HHHHHHcCCC
Q 005268 134 SILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNS-IIAAYEQSND 210 (705)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~ 210 (705)
+++..+.+..++..+.+++..-.+..+ .+....+.|..+|-+..++..|-..++++.. |...-|.. -...+-+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 333333344444444444444333321 1333344445555555555555555555533 21111211 1234445566
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHH--HHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 005268 211 PITAHGFFTTMQQAGIQPDLLTLVSLTSI--VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 288 (705)
Q Consensus 211 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 288 (705)
+.+|+.+...|... |+...-..-+.+ ..+.+++..++.+.++... +.+..+.+...-...+.|+++.|.+-
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhccchheeeccccHHHHHHH
Confidence 66666666666432 111111111111 1234445555554444321 12333444444455567777777777
Q ss_pred HhcCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCccc----ccchhHHhhccCchHHHHHHHHHHH
Q 005268 289 FEGLPVK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT----YVSILPAYSHVGALRQGIKIHARVI 360 (705)
Q Consensus 289 f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~ 360 (705)
|+...+- ....||..+..| +.|+++.|++...++.+ .|++-.+.. -+-.+++ ..+.....++...+
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCch----hcccchHHHHHHHH
Confidence 7655432 345565544433 55677777777777776 665432211 1111110 00111111111111
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 005268 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-H 434 (705)
Q Consensus 361 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 434 (705)
+..+|.-...+.+.|+.+.|.+.+-.|++ -|+++...+.-. -..+++.+..+-+.-+++. .|- .
T Consensus 241 -------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ 310 (459)
T KOG4340|consen 241 -------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPP 310 (459)
T ss_pred -------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCCh
Confidence 12334444456788999999999999984 466775544322 2246666777767777764 443 4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc-CCcchHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK-PHLKHYGCMVDLFG-RAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 512 (705)
.||..++-.|++..-++-|-.++.+-... ... .+...|+ |++++. -.-..++|++-++.+...-....-..-+..-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988887532111 000 1222333 334443 3346666766555442000000001111111
Q ss_pred -HhcCCh----hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 513 -RIHGNM----ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 513 -~~~g~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.++.+- ..+.+-+++.+++-- .....-++.|.+..++.-+.+.|..-.+.
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 122222 233444455555431 23456778899999999999999876654
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-05 Score=80.85 Aligned_cols=438 Identities=12% Similarity=0.027 Sum_probs=230.1
Q ss_pred HHHHcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHhHHHHhhcCCChH
Q 005268 71 HMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP-ITVASILPVCARSDNIL 146 (705)
Q Consensus 71 ~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 146 (705)
++....|+++.|...|-+.. ++|-+.|.--..+|+..|++++|++--.+-++ +.|+. --|+-...+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 44567899999999997654 56778888888999999999999887776665 46763 46888888888899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH-HHHHhccCCCCeehHHHHH-----HHHHcCCChhhHHHHHHH
Q 005268 147 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA-LRVFDQMMERDVVSWNSII-----AAYEQSNDPITAHGFFTT 220 (705)
Q Consensus 147 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 220 (705)
+|...|..-++.. +.+...++.|.+++ ..+.+ .+.| .++..|..+. +.+.....+..-++.++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999998877764 33666778888877 11111 1111 1122222111 111111111111111111
Q ss_pred HHHC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHH--HhcCCCchhHHHHHHHHHHHhcCC-HHHHHHHHhcCCCCC
Q 005268 221 MQQA-GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM--RRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGLPVKD 296 (705)
Q Consensus 221 m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~~~ 296 (705)
-... +...+ ...++.+.......+.....-.... ..+ ..|.. -........++ .++.+.. .-
T Consensus 158 ~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~-~~p~~----~~~~~~~~~~d~~ee~~~k------~~ 223 (539)
T KOG0548|consen 158 NPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASM-AEPCK----QEHNGFPIIEDNTEERRVK------EK 223 (539)
T ss_pred CcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCC-CCccc----ccCCCCCccchhHHHHHHH------Hh
Confidence 0000 00000 0001111111100000000000000 000 00000 00000000000 0000000 00
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc-cchhHHhhccCchHHHHHHHHHHHHhCCCC------chh
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVGALRQGIKIHARVIKNCLCF------DVF 369 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~~~ 369 (705)
..-...+....-+..+++.|++-+....+ +. ...+| +....++...|........-...++.|... =..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 01122334444444555555555555544 22 22222 233334445555444444444443333211 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSG 448 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 448 (705)
....+..+|.+.++.+.|...|.+....... -....+....++++...+...- +.|... -...=.+.+.+.|
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 1222445778888899999988875522111 1112233445666666655554 455542 2223356778899
Q ss_pred cHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 005268 449 LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVAS 525 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 525 (705)
++..|...+.++++. .| |...|+...-.|.+.|.+.+|+.-.+.. ...|+ ...|.-=..++....+++.|...|
T Consensus 373 dy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 35 6678999999999999999998876655 34554 334444455566667899999999
Q ss_pred HHHhccCCCCcchhhhhhhhhhh
Q 005268 526 DRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
++.++.+|++..+...+...+..
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999887776666665544
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=1.5e-06 Score=85.62 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCc
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS----HSGL 449 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 449 (705)
...+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 334555667777776666554 3333344455666666666666666666665 333332 222222221 1123
Q ss_pred HHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 450 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
+.+|..+|+++.+. .. +++.+.+.+..+....|++++|+..+++++
T Consensus 183 ~~~A~y~f~El~~~--~~--------------------------------~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FG--------------------------------STPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCHHHHHHHHHHCC--S----------------------------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc--cC--------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45555555554332 22 334444444444455555555555555555
Q ss_pred ccCCCCcchhhhhhhhhhhcCCc-chHHHHHHHHH
Q 005268 530 EVDSENVGYYVLMSNIYANVGKW-EGVDEVRSLAR 563 (705)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 563 (705)
+.+|+++.+...++-+....|+. +.+.+++.+++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555554444444444444544 23334444443
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=5.1e-06 Score=81.96 Aligned_cols=156 Identities=11% Similarity=0.090 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhh
Q 005268 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 344 (705)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 344 (705)
+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv 174 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHH
Confidence 3334444445677788999998888765 5566677788899999999999999999987 3333 33333333332
Q ss_pred c----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCh-H
Q 005268 345 H----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQG-D 416 (705)
Q Consensus 345 ~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~-~ 416 (705)
. ...+..|..+|+++.+. +.+++.+.|.+..++...|++++|.+++.+.... +..+...+|......|+. +
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 2 22455666666664432 3445555555555555555555555555544322 222233334444444444 3
Q ss_pred HHHHHHHHHHH
Q 005268 417 KALNFFRQMLD 427 (705)
Q Consensus 417 ~A~~~~~~m~~ 427 (705)
.+.+.+.++..
T Consensus 254 ~~~~~l~qL~~ 264 (290)
T PF04733_consen 254 AAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00014 Score=75.46 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc-ccccchhHHhhccCchHHHHHHHHHHHHhCC-CCch--hHHHHHHH
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCL-CFDV--FVATCLVD 376 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~ 376 (705)
..+...+...|++++|.+.+++..+ ..|+. ..+..+...+...|++++|...+....+... .++. ..+..+..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344456666667777776666665 44432 2233334444445555555555544443211 1111 12223444
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 005268 377 MYGKCGRIDDAMSLFYQV 394 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~ 394 (705)
.+...|++++|..+|++.
T Consensus 195 ~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 195 FYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 444455555555554443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=1.6e-06 Score=76.21 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005268 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P 497 (705)
Q Consensus 420 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 497 (705)
.+|++.++ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 45654 44456677788888888888887763 344 5567777888888888888888888777 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 498 VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 498 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 344 5677888888888888888888888888888888888877766554
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00047 Score=81.41 Aligned_cols=259 Identities=12% Similarity=0.012 Sum_probs=133.2
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCChhhHHHHHHHHHHh----cCCCchhHHHHHHHHH
Q 005268 204 AYEQSNDPITAHGFFTTMQQAGIQPDL----LTLVSLTSIVAQLNDCRNSRSVHGFIMRR----GWFMEDVIIGNAVVDM 275 (705)
Q Consensus 204 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~~~~~~~~~li~~ 275 (705)
.+...|++++|...+++....-...+. .....+...+...|+++.+...+...... |...........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666665442111111 12223333445566666666666555432 1011112344455566
Q ss_pred HHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcC-CCCCC--cccccchhH
Q 005268 276 YAKLGIINSACAVFEGLPV-------K----DVISWNTLITGYAQNGLASEAIEVFQMMEECN-EINPN--QGTYVSILP 341 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~--~~t~~~ll~ 341 (705)
+...|+++.|...+++... + ....+..+...+...|++++|...+.+..... ...|. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6677777777766554321 0 11223344455566678888777777664410 01111 112222334
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCc-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-h------HHHHHHH
Q 005268 342 AYSHVGALRQGIKIHARVIKNCLCFD-VF-----VATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-P------WNAIISC 408 (705)
Q Consensus 342 a~~~~~~~~~a~~~~~~~~~~g~~~~-~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-~------~~~li~~ 408 (705)
.....|+.+.|...+..+........ .. .....+..+...|+.+.|...+.....+... . +..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 45566777777777666644211000 00 0011223445577888888877665532211 1 2345566
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 409 HGIHGQGDKALNFFRQMLDE----GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 409 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888887777653 222222 2444555567777777777777777664
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=5.3e-06 Score=80.46 Aligned_cols=179 Identities=9% Similarity=-0.015 Sum_probs=117.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---c---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----H
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---S---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----T 436 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 436 (705)
....+..+...|.+.|++++|...|+++...+ . ..|..+..+|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 44556667777778888888888887765322 1 24566777788888888888888888773 44322 3
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhhCCcCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005268 437 FVSLLTACSHS--------GLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507 (705)
Q Consensus 437 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 507 (705)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444455443 6677778777777654 44322 22111111 0011100 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+...+...|++++|...++++++..|++ +..+..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999987765 467889999999999999999998887654
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00011 Score=78.00 Aligned_cols=401 Identities=15% Similarity=0.138 Sum_probs=221.0
Q ss_pred CCHHHHHHHHH--HHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCh
Q 005268 61 WDVFVAASLLH--MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-G--------VSMDP 129 (705)
Q Consensus 61 ~~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 129 (705)
-|..+-.++++ .|.--|+.+.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 36667677765 5667899999887766654 3456999999999998888887777666431 1 1222
Q ss_pred hhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCC-CeehHHHHHHHHHcC
Q 005268 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-DVVSWNSIIAAYEQS 208 (705)
Q Consensus 130 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~ 208 (705)
.+=.-+.......|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..- =..||..-...+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222222223357788999999999887643 3446677889999998886543221 112555555566667
Q ss_pred CChhhHHHHHHHHH----------HCC---------CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHH
Q 005268 209 NDPITAHGFFTTMQ----------QAG---------IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIG 269 (705)
Q Consensus 209 g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 269 (705)
++.+.|++.|++-. ... -.-|...|.....-+.+.|+.+.|..+|..+...
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------- 941 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------- 941 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------
Confidence 88888888876531 110 0112222233333333444444444444433221
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccC--
Q 005268 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG-- 347 (705)
Q Consensus 270 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~-- 347 (705)
-+++...+-.|+.++|.++-++ ..|..+.-.+...|-..|++.+|...|.+.+. |...|+.|-..+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA----------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHhcCHH
Confidence 2333334444555555555443 23445555666777777777777777776653 233333332221
Q ss_pred -------------chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------------CCCcc
Q 005268 348 -------------ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--------------RSSSV 400 (705)
Q Consensus 348 -------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------------~~~~~ 400 (705)
+.-.|-++|++ .|. -....+..|-|.|.+.+|+++--+-. ..|+.
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 12222222222 111 11223456778888887776532211 22333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCM 476 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 476 (705)
..+--..-|+.+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-...-.|+ ......+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 355555666777788888887776655 444555554433 22222332333211111222 2456667
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 005268 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519 (705)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 519 (705)
.+.+.++|.+..|-+-|.+++.+ . .-+.++.+.||.+
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcc
Confidence 78888888888888877776522 1 2234455666644
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=7.6e-06 Score=91.30 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=168.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005268 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS--------SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436 (705)
Q Consensus 365 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 436 (705)
+.+...|-..|......+++++|++++++..+. -...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667788888888999999999999887621 2344999998888889888999999999983 333457
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP---DASIWGALLGAC 512 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 512 (705)
|..|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|..+++++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999877 56678999999999999999999999876 2223 344556666777
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCc
Q 005268 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 568 (705)
.++|+.+.+..+|+.++.-.|.....|..++++-.+.|..+.++.+|+.....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999988764
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2e-07 Score=58.29 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.2
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhccC
Q 005268 159 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 191 (705)
Q Consensus 159 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 191 (705)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=5.6e-06 Score=86.76 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=127.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHH
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 342 (705)
+|--.....+...+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k------------- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---K------------- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---C-------------
Confidence 334444455666666666666666666653 3556666666666666666655554443 2
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
+||...|..+.|.....--+++|.++++....+-...|+-+ ...+++++++.+.|
T Consensus 454 ----------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 454 ----------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHL 508 (777)
T ss_pred ----------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHH
Confidence 34455555555554444445566666554432211111111 12357778888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-
Q 005268 423 RQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV- 498 (705)
Q Consensus 423 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~- 498 (705)
+.-.+ +.|-. .||-.+..+..+.++++.+.+.|.... ...|+ ...||.+-.+|.+.|+..+|...+++. +.
T Consensus 509 e~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 509 ERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77766 44443 477777777777777888877777665 34553 456666666666666666666666655 21
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 005268 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 499 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
.-+..+|...+-....-|.+++|++++.++..+.
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 1234456666666666677777777777666543
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.45 E-value=2.2e-06 Score=73.92 Aligned_cols=120 Identities=8% Similarity=-0.019 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
+.+..-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|++|.++..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445566777788999999999999887 3455 5778999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHh
Q 005268 547 ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 611 (705)
...|+.++|++-|+..+... ..+|+..++..+++...+.+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999887652 1367777777777777766643
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=6.8e-06 Score=76.45 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC-RIHGN--MELG 521 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 521 (705)
.++.+++...++...+. -+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55556666666665542 2335667888888888888888888888777 3445 466777777763 56666 4889
Q ss_pred HHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999998899999999999999999999998887763
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.44 E-value=0.00046 Score=75.16 Aligned_cols=498 Identities=12% Similarity=0.052 Sum_probs=262.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCC------------------------------------
Q 005268 47 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP------------------------------------ 90 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~------------------------------------ 90 (705)
|++.|....+.. ..+...+....+.|++..+++.|..+.-...
T Consensus 511 A~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 511 AKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 444444443332 3456667777788888777777766632111
Q ss_pred ---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHH--HhhcCCChHHHHHHHHHHHHhCCCCchh
Q 005268 91 ---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP--VCARSDNILSGLLIHLYIVKHGLEFNLF 165 (705)
Q Consensus 91 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 165 (705)
+.|..+|..+..+|.+.|++..|+++|.+... ++|+.. |...-. .-+..|.+.++...++.++..- ..-..
T Consensus 590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~ 665 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERT 665 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHH
Confidence 12666788899999999999999999988765 345432 222222 2245677888887777766531 11111
Q ss_pred HHHHHHHHHHc-------cCCHHHHHHHHhccCC-----------CCeehHHHHHHHH---HcCC--Chh-hHHHH-HHH
Q 005268 166 VSNNLINMYAK-------FGMMRHALRVFDQMME-----------RDVVSWNSIIAAY---EQSN--DPI-TAHGF-FTT 220 (705)
Q Consensus 166 ~~~~Li~~y~~-------~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~---~~~g--~~~-~A~~~-~~~ 220 (705)
..+.|...+.+ .|-..+|...|+.-.+ .|...|-.+-.++ .+.. -+. -.+.+ +.+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q 745 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQ 745 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22223322222 2333333333332211 1222333222211 1111 000 00111 111
Q ss_pred HHHCCCCC--------------------ChhhHHHHHHHHHc----cCC----hhhHHHHHHHHHHhcCCCchhHHHHHH
Q 005268 221 MQQAGIQP--------------------DLLTLVSLTSIVAQ----LND----CRNSRSVHGFIMRRGWFMEDVIIGNAV 272 (705)
Q Consensus 221 m~~~g~~p--------------------~~~t~~~ll~a~~~----~~~----~~~a~~i~~~~~~~g~~~~~~~~~~~l 272 (705)
....+..| +..+|..+...+.+ .+. ...|...+...++.. ..+...||+|
T Consensus 746 ~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaL 823 (1238)
T KOG1127|consen 746 LEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNAL 823 (1238)
T ss_pred HHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHH
Confidence 22222222 22233322222211 111 122333333344432 4455666666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCc
Q 005268 273 VDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGA 348 (705)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~ 348 (705)
.-. ...|.+.-|...|-.-. +.+..+|..+...+.++.+++.|...|...+. +.| |...|..........|+
T Consensus 824 GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 824 GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHH
Confidence 554 55677777777775432 45778899999999999999999999999877 777 55556554444456677
Q ss_pred hHHHHHHHHH--HHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------------CCCcchHHHHHHHHHh
Q 005268 349 LRQGIKIHAR--VIK--NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------------RSSSVPWNAIISCHGI 411 (705)
Q Consensus 349 ~~~a~~~~~~--~~~--~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~ 411 (705)
.-+...++.. ... .|--++...+-+-.......|+.++-...-+.+. +.+...|.......-.
T Consensus 900 ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEh 979 (1238)
T KOG1127|consen 900 IIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEH 979 (1238)
T ss_pred HHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHH
Confidence 6667666655 222 2333444444333334455666665554444443 2334447777777777
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHH--HhcC
Q 005268 412 HGQGDKALNFFRQMLDE-GVRPDHITFVSL----LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF--GRAG 484 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g 484 (705)
.+.+++|.++..+.+.- ..+-+..+|+.+ ...+...|.++.|..-+ +..|-.+-=-.+.-.+ .-.|
T Consensus 980 L~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~-------~~~~~evdEdi~gt~l~lFfkn 1052 (1238)
T KOG1127|consen 980 LEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS-------WKEWMEVDEDIRGTDLTLFFKN 1052 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh-------cccchhHHHHHhhhhHHHHHHh
Confidence 88888888887776531 123344455532 22344455555554433 3333211111111111 3367
Q ss_pred CHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 485 HLGMAHNFIQNMP----VRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 485 ~~~~A~~~~~~~~----~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
+++++.+.|+++- .+.|. +....++......+.-+.|...+-+...+.|.+......|.-++.-..+-.....+.
T Consensus 1053 df~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssail 1132 (1238)
T KOG1127|consen 1053 DFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAIL 1132 (1238)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHH
Confidence 8888888888872 23343 344555555566777778888777777777767666666665554443333333333
Q ss_pred HHH
Q 005268 560 SLA 562 (705)
Q Consensus 560 ~~m 562 (705)
++.
T Consensus 1133 eel 1135 (1238)
T KOG1127|consen 1133 EEL 1135 (1238)
T ss_pred HHH
Confidence 333
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0032 Score=64.34 Aligned_cols=421 Identities=13% Similarity=0.165 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHH
Q 005268 60 EWDVFVAASLLHMYCRFGLANVARKLFDDMPV--R-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 136 (705)
Q Consensus 60 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (705)
+.|+.+|+.||.-+... .+++++..++++.. | ....|..-|..-....+++....+|.+.+..-. +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56889999999877665 99999999999873 3 456799999999999999999999999886533 344444444
Q ss_pred HHhhc-CCChHH----HHHHHHHH-HHhCCCCch-hHHHHHHHH---------HHccCCHHHHHHHHhccCC-C--Cee-
Q 005268 137 PVCAR-SDNILS----GLLIHLYI-VKHGLEFNL-FVSNNLINM---------YAKFGMMRHALRVFDQMME-R--DVV- 196 (705)
Q Consensus 137 ~~~~~-~~~~~~----a~~~~~~~-~~~g~~~~~-~~~~~Li~~---------y~~~g~~~~A~~~f~~m~~-~--~~~- 196 (705)
.-..+ .+.... -.+.|+.. .+.|+++-. ..|+..+.. |....+++..++++.++.. | |..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43322 222222 22334433 345654433 335555543 3344467778888887754 2 111
Q ss_pred hHH------HHHHH-----H--HcCCChhhHHHHHHHHHH--CCCCCChhh---------------HHHHHHHHHccCCh
Q 005268 197 SWN------SIIAA-----Y--EQSNDPITAHGFFTTMQQ--AGIQPDLLT---------------LVSLTSIVAQLNDC 246 (705)
Q Consensus 197 ~~~------~li~~-----~--~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~~ 246 (705)
.|+ .=|+. + -+...+..|..+++++.. .|+.-+..+ |..+|. +.+.+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCCc
Confidence 222 11111 1 123345667777777643 343322222 111111 1111111
Q ss_pred h-h--------HHHHHHHHHH-hcCCCchhHHH-----HHHHHHHHhcCCH-------HHHHHHHhcCCCC----ChhHH
Q 005268 247 R-N--------SRSVHGFIMR-RGWFMEDVIIG-----NAVVDMYAKLGII-------NSACAVFEGLPVK----DVISW 300 (705)
Q Consensus 247 ~-~--------a~~i~~~~~~-~g~~~~~~~~~-----~~li~~y~~~g~~-------~~A~~~f~~~~~~----~~~~~ 300 (705)
. + ..-+|++.+. .+ +.|++..- ...-+.+...|+. +++..+++..... +...|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~-~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLG-YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 0011111111 11 22222111 0111223333333 2333333332211 12222
Q ss_pred HHHHHHHH---HcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCC-chhHHHHHHH
Q 005268 301 NTLITGYA---QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVD 376 (705)
Q Consensus 301 ~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~ 376 (705)
..+..--- .....+.....+++......+.|+ .+|...++...+..-++.|+.+|.++.+.+..+ +++++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 22211100 011244455555555542233333 345566676677777788888888887776665 7778888887
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHH
Q 005268 377 MYGKCGRIDDAMSLFYQVPR--SSS-VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVS 451 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 451 (705)
.|+ .++.+-|.++|+--.+ .|. .--+..+.-+...|+-..|..+|++.+..++.|+. ..|..+|.-=+.-|++.
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 776 4677777777775441 222 22344555566667777777777777777666664 36777777777777777
Q ss_pred HHHHHHHHhHHhhC--CcCCcchHHHHHHHHHhcCCHH
Q 005268 452 EGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 452 ~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~ 487 (705)
.+.++-+++...+. ..|...+-..+++.|+-.+...
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 77777666655443 3333344445555555554443
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=2e-05 Score=80.59 Aligned_cols=212 Identities=13% Similarity=0.144 Sum_probs=160.9
Q ss_pred HccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHH
Q 005268 241 AQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAI 317 (705)
Q Consensus 241 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 317 (705)
.+.|++..|.-.++..++.. |.+...|.-|.......++-..|+..+++.. ..|....-.|...|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45677888888888888875 7888899999888888888888888777654 447778888888999999999999
Q ss_pred HHHHhhhhcCCCCCCc----------ccccchhHHhhccCchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHH
Q 005268 318 EVFQMMEECNEINPNQ----------GTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDD 386 (705)
Q Consensus 318 ~~~~~m~~~~~~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~k~g~~~~ 386 (705)
+.|+.-.. . .|-. .+-.. ........+....++|-.+ ...+..+|..+...|.-.|--.|++++
T Consensus 374 ~~L~~Wi~-~--~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIR-N--KPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHH-h--CccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99988755 1 1111 10000 1222333444555555555 445555788888889888999999999
Q ss_pred HHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 387 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 387 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
|...|+... +.|...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999876 45677799999999999999999999999999 899975 44455568999999999998876554
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=4.3e-06 Score=73.51 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=88.6
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 466 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 466 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3555 4666788999999999999999987 3445 6789999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcchHHHHHHHHHhCC
Q 005268 544 NIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 544 ~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.8e-05 Score=71.83 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=108.9
Q ss_pred cCCHHHHHHHHhhCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 005268 381 CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 381 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
.+++..+..+.++.+ +.+..+.+.......+.|++++|++-|+...+- |..| ...|+..+ +..+.|+++.|+++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 455555566666655 344444444444455566666666666666553 3332 33444443 3344556666666666
Q ss_pred HhHHhhCCcCC---------------------cchHHHHH-------HHHHhcCCHHHHHHHHHhCC----CCCCHHHHH
Q 005268 459 MMQEEFGIKPH---------------------LKHYGCMV-------DLFGRAGHLGMAHNFIQNMP----VRPDASIWG 506 (705)
Q Consensus 459 ~m~~~~~~~p~---------------------~~~~~~li-------~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 506 (705)
++.++ |++.. ..+-+.++ ..+.+.|+++.|.+.+..|| .+.|++|..
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 65544 43211 11223333 34568899999999999995 335777766
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHH
Q 005268 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 507 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
.+.-. -..+++.++.+-++-+++++|-.+.++..+.-+|++..-++-|..++-+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55322 2355677777778888889987788898888899998888888777643
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=1.5e-05 Score=83.59 Aligned_cols=188 Identities=17% Similarity=0.168 Sum_probs=119.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
++|--..-..+.+.+.++|-...|..+|++.. .|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 45555566677788888888888888887753 567778888888888888888888777 47888888888887
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 521 (705)
.-....+++|+++++....+ .-..+.....+.++++++.+.++.. .++| -..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777778888877654332 0011111222345555555555433 3333 234555555555555566666
Q ss_pred HHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.+.|.....++|++...++.++-+|.+.|+-.+|...++++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666655555555443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=3.3e-05 Score=74.91 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=125.5
Q ss_pred cccccchhHHhhccCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ccc---hHHH
Q 005268 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLC-F-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSV---PWNA 404 (705)
Q Consensus 333 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~---~~~~ 404 (705)
...+......+...|+++.|...++.+++.... | ....+..+...|.+.|++++|...|+++.+. +.. .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344566677788999999999999999876421 1 1246677889999999999999999988632 222 3555
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHH
Q 005268 405 IISCHGIH--------GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475 (705)
Q Consensus 405 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 475 (705)
+..++.+. |++++|++.|+++... .|+.. ....+..... ... .. . .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~-~--------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL-A--------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH-H--------HHHHH
Confidence 56666654 7889999999999984 56653 2222211100 000 00 0 01235
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 476 MVDLFGRAGHLGMAHNFIQNM----PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667889999999999988876 2223 356888999999999999999998888776555
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=5.2e-05 Score=70.56 Aligned_cols=154 Identities=7% Similarity=0.098 Sum_probs=116.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 454 (705)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877655543332211 0 1123566788888888888843 445568888888999999999999
Q ss_pred HHHHHhHHhhCCcC-CcchHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005268 455 RYFHMMQEEFGIKP-HLKHYGCMVDL-FGRAGH--LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 455 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 528 (705)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 455 56778888886 467787 59999999988 4455 5678889999999999999999999999
Q ss_pred hccCCCCcchhh
Q 005268 529 FEVDSENVGYYV 540 (705)
Q Consensus 529 ~~~~p~~~~~~~ 540 (705)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765543
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=4.5e-05 Score=84.13 Aligned_cols=139 Identities=9% Similarity=0.087 Sum_probs=113.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHH
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYG 474 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 474 (705)
.+...+-.|.....+.|.+++|+.+++...+ +.|+.. ....+..++.+.+++++|....++... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3456677788888899999999999999999 788875 677778889999999999999888874 3664 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
.+..++.+.|++++|..+|++.- ..|+ ..+|-++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888999999999999999883 3444 778899999999999999999999999987755444444
No 121
>PLN02789 farnesyltranstransferase
Probab=98.25 E-value=0.00014 Score=72.86 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=111.1
Q ss_pred HHHhcC-CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc
Q 005268 377 MYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG--DKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGL 449 (705)
Q Consensus 377 ~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 449 (705)
++.+.| ++++++..++++. .++...|+.....+.+.|+. ++++.+++++++ ..|. ..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhh
Confidence 333444 4566666666554 33444466554445555543 567778878877 3443 4577777777777888
Q ss_pred HHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----C
Q 005268 450 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA---GHL----GMAHNFIQNM-PVRP-DASIWGALLGACRIH----G 516 (705)
Q Consensus 450 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g 516 (705)
++++++.++.+.+. . .-+...|+....++.+. |.+ ++++++..++ ...| |...|+.+...+... +
T Consensus 158 ~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 88888888887754 1 22445566655555444 222 4566666443 4455 577899998888874 3
Q ss_pred ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
+..+|...+.+++..+|+++.+...|+++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 456788889999999999988899999999864
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=3.5e-05 Score=71.42 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 005268 430 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGA 507 (705)
Q Consensus 430 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 507 (705)
..|+......+-.++...|+-+....+...... ....+.......+....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335555667777777777776655432 22234445556778888888888888888887 34567788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+.-+|-+.|++++|...|.+++++.|+++..+..|+-.|.-.|+++.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888887776553
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00021 Score=72.21 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=117.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHH
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGC 475 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 475 (705)
....+....-.+...|++++|+..++.++. -.||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 333455555566778999999999999988 46776666555 4578999999999999999884 4676 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcc
Q 005268 476 MVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (705)
+.++|.+.|++.+|+.+++... .+-|+..|..|..+|...|+..++.... +..|+-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHH
Confidence 8899999999999999998873 3446889999999999999988777654 44677889999
Q ss_pred hHHHHHHHHHhCC
Q 005268 554 GVDEVRSLARDRG 566 (705)
Q Consensus 554 ~a~~~~~~m~~~~ 566 (705)
+|........++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888764
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.18 E-value=0.0003 Score=79.16 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=159.9
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHHhcCC---CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHH
Q 005268 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWF---MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK--DVISWNTLITG 306 (705)
Q Consensus 232 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~ 306 (705)
.|..-+.-....++.+.|+.+.+++.+.-.+ ..-..+|.+++++-..-|.-+...++|++..+- ....|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4555555566666677777766666554212 123467888888888888888888888877643 34568888888
Q ss_pred HHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHH
Q 005268 307 YAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRID 385 (705)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~ 385 (705)
|.+.+.+++|.++|+.|.+..+ -....|...+..+.+..+-+.|..++.++++.-.. -.+......+++-.++|+.+
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 9999999999999999987333 45556777888888888888899999888875221 24556677778888999999
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCc
Q 005268 386 DAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGL 449 (705)
Q Consensus 386 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~ 449 (705)
.++.+|+... ++-...|+..|..-.++|+.+.+..+|++.+..++.|-. +.|...|..=...|+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999877 344566999999999999999999999999999888865 355555543333344
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.4e-06 Score=53.64 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 005268 95 GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 129 (705)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 129 (705)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00011 Score=68.29 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005268 372 TCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448 (705)
Q Consensus 372 ~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 448 (705)
..+-..|...|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 444455555666666666655543 233333455666667777777777777777663 2445566666666777777
Q ss_pred cHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHH
Q 005268 449 LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR-P-DASIWGALLGACRIHGNMELGAVAS 525 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~ 525 (705)
+.++|..-|.+..+- .| ++..++.|.-.|.-.|+++.|..++...... + |..+-..|.-.....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777766666543 33 3345666666666667777776666655222 2 4555566666666666666666655
Q ss_pred HH
Q 005268 526 DR 527 (705)
Q Consensus 526 ~~ 527 (705)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 127
>PLN02789 farnesyltranstransferase
Probab=98.14 E-value=0.0001 Score=73.81 Aligned_cols=182 Identities=10% Similarity=0.107 Sum_probs=132.6
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc--H
Q 005268 378 YGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGL--V 450 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~ 450 (705)
+.+.+..++|+.+.+++. +.+...|+.....+...| ++++++..++++.+. .|+ ..+|..-...+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 444567778888887766 344455777777777777 679999999999985 444 3456655555555665 3
Q ss_pred HHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----hH
Q 005268 451 SEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNM----EL 520 (705)
Q Consensus 451 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~----~~ 520 (705)
+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ...| |...|+.......+. |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 677888887774 355 5678888888999999999999999988 3333 677898887776654 222 46
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhhhhhc----CCcchHHHHHHHHHh
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNIYANV----GKWEGVDEVRSLARD 564 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 564 (705)
+.....+++.++|+|.+++..+..++... ++..+|.++.....+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77778899999999999999999988773 445667776666444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00023 Score=79.34 Aligned_cols=236 Identities=10% Similarity=0.060 Sum_probs=134.7
Q ss_pred CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 005268 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273 (705)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 273 (705)
+...|..|+..|...+++++|.++.+.-.+. .|+. ...+-.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~-----------------------------------i~~yy~~G 72 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKS-----------------------------------ISALYISG 72 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcc-----------------------------------eehHHHHH
Confidence 4456777777777777777777777755443 2332 22222333
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHH
Q 005268 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
..|.+.++.+++..+ .++..+....++.-...+...|.. ..-+...+..+..+|.+.|+.+++.
T Consensus 73 ~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 73 ILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred HHHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHH
Confidence 344444444443332 233333333444333333334433 2223446666777777888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
.+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+. +..|...+++.++.++|.++.. ..|+
T Consensus 137 ~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~ 201 (906)
T PRK14720 137 GVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSD 201 (906)
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcc
Confidence 8888888776 56788888888888888 888888887654 3346777788888999988888 4555
Q ss_pred HHHH-HHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005268 434 HITF-VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLG 510 (705)
Q Consensus 434 ~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 510 (705)
.+.+ ..++. .+....|..--..++--+..-|-...+++++..+++.+ ...| |.....-++.
T Consensus 202 d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~ 265 (906)
T PRK14720 202 DFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIR 265 (906)
T ss_pred cchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH
Confidence 4432 22222 22221122222223444445555666666777766665 2233 3334444444
Q ss_pred HHH
Q 005268 511 ACR 513 (705)
Q Consensus 511 ~~~ 513 (705)
.|+
T Consensus 266 ~y~ 268 (906)
T PRK14720 266 FYK 268 (906)
T ss_pred HHH
Confidence 443
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.4e-06 Score=53.09 Aligned_cols=35 Identities=34% Similarity=0.683 Sum_probs=31.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 434 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 434 (705)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.12 E-value=0.0083 Score=57.87 Aligned_cols=251 Identities=13% Similarity=0.147 Sum_probs=146.9
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHHcCChhH
Q 005268 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG---LPVKDVISWNTLITGYAQNGLASE 315 (705)
Q Consensus 239 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~ 315 (705)
.+...|+...+......+++. -+-|...+..-...|...|++..|+.-++. +...++...--+-..+-..|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 344556666666666666655 366777888888888899998888765554 445566777777777778888888
Q ss_pred HHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005268 316 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395 (705)
Q Consensus 316 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 395 (705)
++...++-.+ +.||....-. .| ..+......++.|.+ ....+++.++.+..+...
T Consensus 242 sL~~iRECLK---ldpdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 242 SLKEIRECLK---LDPDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHc---cCcchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHH
Confidence 8887777766 7777543211 11 112222222222211 123345555555554443
Q ss_pred CCCc----ch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc
Q 005268 396 RSSS----VP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467 (705)
Q Consensus 396 ~~~~----~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 467 (705)
+.++ +. +..+-.+|...|++.+|++...+.++ +.|| ..++.--..||.-...++.|+.=|+...+ +.
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cC
Confidence 2222 22 44455667777888888888888888 6776 45777777788888888888888877763 34
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCC
Q 005268 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSEN 535 (705)
Q Consensus 468 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 535 (705)
++..- +|.| ++.|.++..... +.|- |.. -+-.++.+-.+-.++|+++-. -.|+|
T Consensus 372 ~sn~~--------~reG-le~Akrlkkqs~-kRDY--YKI--LGVkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 372 ESNTR--------AREG-LERAKRLKKQSG-KRDY--YKI--LGVKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred cccHH--------HHHH-HHHHHHHHHHhc-cchH--HHH--hhhcccccHHHHHHHHHHHHHhcCCcc
Confidence 43111 1111 344555544443 1121 111 123344445566667776654 45766
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=3.1e-05 Score=67.65 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=69.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
.....++..+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34555566666777777777777665 2233 456777777777778888888888888888888887888888888888
Q ss_pred cCCcchHHHHHHHHHhC
Q 005268 549 VGKWEGVDEVRSLARDR 565 (705)
Q Consensus 549 ~g~~~~a~~~~~~m~~~ 565 (705)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888776654
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00026 Score=78.31 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=116.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RS-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 439 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 439 (705)
...++..+-.|.......|..++|..+++... .| +...+..++..+.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 55678888999999999999999999999887 33 445588899999999999999999999999 578775 4555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALL 509 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 509 (705)
+..++.+.|++++|..+|+++... .| +...+..+..++-..|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 566889999999999999999863 33 3678899999999999999999999987 2345555555544
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.3e-06 Score=51.15 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005268 94 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 127 (705)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 127 (705)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999988887
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00052 Score=69.41 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNM 518 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 518 (705)
-.+...|.+++|+..++.+... .| |+..+....+.+.+.|+.++|.+.++++ ...|+ ...|-++..++.+.|+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 3556788999999999998754 55 5566677789999999999999999998 46677 67888999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 519 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.+|+..+.....-+|+|+..|..|+.+|..+|+..++...+.++...
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888776543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.92 E-value=0.00017 Score=62.91 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005268 421 FFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 498 (705)
Q Consensus 421 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 498 (705)
+|++.++ ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 45654 34556667788889999999999888753 1335678888889999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 499 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 499 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
.| +...|..+...+...|+++.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56788888889999999999999999999999977653
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2e-05 Score=49.61 Aligned_cols=33 Identities=33% Similarity=0.659 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 432 (705)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777788888888888888777776
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00014 Score=74.19 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=93.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRI 514 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 514 (705)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345556666777888888888887754 344 4555777777777778888887766 2233 55566666677888
Q ss_pred cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
.++++.|+.+++++.++.|++..+|..|+.+|...|++++|...+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999998887765
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.064 Score=58.70 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=76.2
Q ss_pred cCCChhHHHHHhccCCC--CCcchHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHH
Q 005268 75 RFGLANVARKLFDDMPV--RDSGSWNAMISGY--CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150 (705)
Q Consensus 75 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (705)
..+++..|....+++.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34666677666666542 343 244444444 4677777887777766554333 66677777777777777888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHH----HHHHHHhccCCCCeehHHH
Q 005268 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMR----HALRVFDQMMERDVVSWNS 200 (705)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~m~~~~~~~~~~ 200 (705)
+++...+. .|+......+..+|+|.+.+. .|.+++...+++--.-|+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 88777664 345666667777777776654 3566666555544444443
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00036 Score=71.30 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHS 447 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 447 (705)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.+.. .| +......-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344556677777889999999999998877777777888888888889999999999874 44 444555556668889
Q ss_pred CcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 005268 448 GLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 500 (705)
Q Consensus 448 g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 500 (705)
++++.|.++.+++.+ ..|+. .+|..|+..|.+.|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999988874 46754 589999999999999999999999987543
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0044 Score=57.78 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH----hc
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RA 483 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~ 483 (705)
.|...|++++|++..+.... + +.... =...+.+..+.+-|.+.++.|.+ +. +..+.+.|..++. -.
T Consensus 117 i~~~~~~~deAl~~~~~~~~--l--E~~Al--~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGEN--L--EAAAL--NVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccch--H--HHHHH--HHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccc
Confidence 35555666666666554111 1 11111 11223455566777777776653 22 2234444444443 34
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHH-HHHH
Q 005268 484 GHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD-EVRS 560 (705)
Q Consensus 484 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~ 560 (705)
+.+.+|.-+|++|. ..|+..+.+.....+...|++++|+.+++.++..+|++|.+...++-.-...|+-.++. +...
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 57888888888883 56888888888889999999999999999999999999998888877777788877665 4444
Q ss_pred HHH
Q 005268 561 LAR 563 (705)
Q Consensus 561 ~m~ 563 (705)
+.+
T Consensus 267 QLk 269 (299)
T KOG3081|consen 267 QLK 269 (299)
T ss_pred HHH
Confidence 443
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.059 Score=55.56 Aligned_cols=438 Identities=13% Similarity=0.109 Sum_probs=237.5
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 005268 92 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 170 (705)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 170 (705)
-|..+|+.||+-+-.. ..+++.+.++++.. +-| ....|..-+..-....+++..+.+|.+.+..-+ +...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 4888999999877655 89999999999985 344 456778888888889999999999999887644 35556555
Q ss_pred HHHHHc-cCCHHHH----HHHHhccC------CCCeehHHHHHHH---------HHcCCChhhHHHHHHHHHHCCCCCCh
Q 005268 171 INMYAK-FGMMRHA----LRVFDQMM------ERDVVSWNSIIAA---------YEQSNDPITAHGFFTTMQQAGIQPDL 230 (705)
Q Consensus 171 i~~y~~-~g~~~~A----~~~f~~m~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~ 230 (705)
++.--+ .|+...+ .+.|+-.. -.+-..|+.-+.- |.++.+.+...++++++....+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc---
Confidence 543222 1222221 22222221 1233346655432 33444556666677776543211
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC--------------CC-
Q 005268 231 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--------------VK- 295 (705)
Q Consensus 231 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------------~~- 295 (705)
+++ +++....... ...|..+..-++ --+...+..|+++.+++. ++
T Consensus 170 --------------nlE---kLW~DY~~fE-~~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 170 --------------NLE---KLWKDYEAFE-QEINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred --------------cHH---HHHHHHHHHH-HHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 111 1111100000 001111111111 011122333333333321 00
Q ss_pred ------ChhHHHHHHHHHHHcCCh--------hHHHHHHHhhhhcCCCCCCcccc-cchh----HHhhccCc-------h
Q 005268 296 ------DVISWNTLITGYAQNGLA--------SEAIEVFQMMEECNEINPNQGTY-VSIL----PAYSHVGA-------L 349 (705)
Q Consensus 296 ------~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~p~~~t~-~~ll----~a~~~~~~-------~ 349 (705)
.+..|-.+|.--..++.- ....-.+++.....+..|+..-. ...+ ..+...|+ -
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 011243333322221110 11111222211112222322110 0000 11222222 3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC---C-CCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVP---R-SSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
+++..+++..+..-...+..+|..+.+.--..- ..+.....+++.. . .-...|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455666666655433334445554443221111 1333334444433 2 22234777777777777789999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 005268 423 RQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP---V 498 (705)
Q Consensus 423 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 498 (705)
.+..+.+..+ .....++++.-+ ..++.+-|.++|+.=.+++|-.| .--.+.++-+.+.|+-..|..+|++.. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 445666666644 46788999999987776654433 355677889999999999999999882 3
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----chhhhhhhhhhhcCCcchHHHHHH
Q 005268 499 RPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV----GYYVLMSNIYANVGKWEGVDEVRS 560 (705)
Q Consensus 499 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 560 (705)
.|| ..+|..+|.--..-||+..+.++-++....-|.+. ..-..+.+.|.-.+.+..-..=++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 444 56999999999999999999999888776555221 122345566666666554443333
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0079 Score=67.57 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 005268 232 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311 (705)
Q Consensus 232 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 311 (705)
.+..+..+|.+.|+.+++.++++.+++.. +.|+.+.|.+...|+.. ++++|..++.+. +..|...+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 34444444445555555555555555543 67788888888888888 888888876543 34477777
Q ss_pred ChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005268 312 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSL 390 (705)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~ 390 (705)
++.++.+++.++.. ..|+.+. .-.++.+.+... |..--+.++-.+-..|.+..+++++..+
T Consensus 184 q~~~~~e~W~k~~~---~~~~d~d---------------~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVH---YNSDDFD---------------FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHh---cCcccch---------------HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 88888998888887 4454332 223333333332 3334455566666777788888888888
Q ss_pred HhhCC---CCCcchHHHHHHHHH
Q 005268 391 FYQVP---RSSSVPWNAIISCHG 410 (705)
Q Consensus 391 ~~~~~---~~~~~~~~~li~~~~ 410 (705)
|+.+. +.|.....-++.+|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 88776 334444566666665
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0015 Score=60.36 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 486 (705)
+....|+.+.|...++++... + |.+.-...+ ..-+...|.+++|.++++...++ . +.|..+|---+.++-..|+-
T Consensus 61 AAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCc
Confidence 333445555555555555543 1 332211111 11133345555555555555543 1 22334444444444445554
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC---cchHHHHHHH
Q 005268 487 GMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK---WEGVDEVRSL 561 (705)
Q Consensus 487 ~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 561 (705)
-+|++-+... .+..|...|.-|...|...|+++.|.-.+++++-..|-++-.+..+++++...|- .+-|++++..
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4554444333 2334555565555556555666666656666555555555555555555544432 3334444444
Q ss_pred HHh
Q 005268 562 ARD 564 (705)
Q Consensus 562 m~~ 564 (705)
..+
T Consensus 217 alk 219 (289)
T KOG3060|consen 217 ALK 219 (289)
T ss_pred HHH
Confidence 443
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.5e-05 Score=47.26 Aligned_cols=31 Identities=48% Similarity=0.942 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005268 95 GSWNAMISGYCQSGNAVEALDILDEMRLEGV 125 (705)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (705)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988763
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00019 Score=57.67 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (705)
+..++..+.+.|++++|...+++. ...| +..+|..+...+...+++++|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777778888888887765 3333 34567777777888888888888888888888887777788888888888
Q ss_pred CcchHHHHHHHHHhC
Q 005268 551 KWEGVDEVRSLARDR 565 (705)
Q Consensus 551 ~~~~a~~~~~~m~~~ 565 (705)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888887776543
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=4.5e-05 Score=57.40 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC-CcchHHHHHHHHHhC
Q 005268 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDR 565 (705)
Q Consensus 501 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 565 (705)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887754
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.8e-05 Score=46.60 Aligned_cols=31 Identities=35% Similarity=0.545 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGV 430 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 430 (705)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00025 Score=67.19 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=71.6
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 520 (705)
..+.+++++|+..|...+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 455677777777777766 3465 3444555567778888888777766655 45665 4588888889999999999
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhh
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
|++.|+++++++|+|.+....|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999887655555443
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0013 Score=70.58 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=81.6
Q ss_pred hCCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHH
Q 005268 393 QVPRSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHS--------GLVSEGQRYFH 458 (705)
Q Consensus 393 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~ 458 (705)
.....+...|...+.+.... ++..+|.++|++.++ ..|+.. .+..+..++... ..+..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33456667788877775442 236689999999999 678753 444433333211 11223333332
Q ss_pred HhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 459 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
..........+...|..+.-.....|++++|...++++ ..+|+...|..+...+...|+.++|...+++++.++|.+++
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 22211012223345555555555566777777666666 35566666666666666777777777777777777766654
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00041 Score=71.22 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 519 (705)
.+...|++++|++.|..+.+. .| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 444556666666666655532 33 3344555555566666666666655555 2333 3445555555566666666
Q ss_pred HHHHHHHHHhccCCCCcchhhhh
Q 005268 520 LGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
+|+..++++++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666555444433
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.00092 Score=58.96 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC--cchHHHHHHHHHhcCC
Q 005268 412 HGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGRAGH 485 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 485 (705)
.++...+...++++.... |+. .....+...+...|++++|...|+..... ...|. ....-.|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 555556666666666532 222 12223334555666666666666666543 21121 1233345566666677
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005268 486 LGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 486 ~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 528 (705)
+++|+..++..+.. .....+..+...+...|+.++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777666655322 23445555666677777777777776654
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0021 Score=56.68 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=51.5
Q ss_pred cCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDA----SIWGALLGACRIHGNMEL 520 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~ 520 (705)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+... ..||. ..+-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555554322111 11222334455555555555555555542 11221 123334444555555555
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHH
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442 11222334444555555555555555555543
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0078 Score=55.75 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=112.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI---ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 451 (705)
.-+...+|+.+.|...++++..+=+-|+... ..-+-..|++++|+++++..++.. +.|.+++.-=+...-..|+.-
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 3334456667777766666542222221111 112445788999999999999865 445567766565666677777
Q ss_pred HHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 005268 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG---NMELGAVASD 526 (705)
Q Consensus 452 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~ 526 (705)
+|++-+....+. +..|.+.|.-+.+.|...|+++.|.-.++++ -+.| ++..+..+...+...| |++.+.+.|+
T Consensus 138 ~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887764 5778889999999999999999999998888 2445 4555566666655444 6788999999
Q ss_pred HHhccCCCCcchh
Q 005268 527 RLFEVDSENVGYY 539 (705)
Q Consensus 527 ~~~~~~p~~~~~~ 539 (705)
+++++.|.+...+
T Consensus 216 ~alkl~~~~~ral 228 (289)
T KOG3060|consen 216 RALKLNPKNLRAL 228 (289)
T ss_pred HHHHhChHhHHHH
Confidence 9999999664443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=3.3e-05 Score=60.83 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 484 GHLGMAHNFIQNM-PVRP---DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 484 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
|++++|+.+++++ ...| +...|-.+...+.+.|++++|..++++ .+.+|.++.....++.+|...|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555444 1112 334444556666666666666666666 5555555555555566666666666666666
Q ss_pred HH
Q 005268 560 SL 561 (705)
Q Consensus 560 ~~ 561 (705)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.00078 Score=57.05 Aligned_cols=100 Identities=8% Similarity=0.017 Sum_probs=51.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 005268 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGAC 512 (705)
Q Consensus 439 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 512 (705)
.+...+...|++++|.+.|..+.+.+.-.| ....+..+...+.+.|++++|...++.+ ...|+ ..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333444445555555555555543311101 0123344555555555555555555544 11222 34455666666
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcch
Q 005268 513 RIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
...|+.++|...++++++..|+++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChhH
Confidence 66777777777777777777765443
No 156
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.054 Score=53.47 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=161.7
Q ss_pred HcCChhHHHHHHHhhhhcCCCCCCcccc----cchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 005268 309 QNGLASEAIEVFQMMEECNEINPNQGTY----VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384 (705)
Q Consensus 309 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 384 (705)
-.|+++.|.+-|+.|.. |+.|- ..+.-...+.|+.+.++++-+..-..- +.-.-...+.+...+..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35777777777777765 22222 223333346677777777776665542 22345667788888888999
Q ss_pred HHHHHHHhhCC-----CCCcch--HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHH
Q 005268 385 DDAMSLFYQVP-----RSSSVP--WNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 385 ~~A~~~~~~~~-----~~~~~~--~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 453 (705)
+.|+++.+.-. ++++.- -..|+.+-+. .-+...|...-.+..+ +.||.+ .-.....++.+.|++.++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99998887654 344332 2333333222 3456677776666666 788865 444456689999999999
Q ss_pred HHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH--H--HHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005268 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA--H--NFIQNMPVRP-DASIWGALLGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 454 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 528 (705)
-.+++.+-+. .|.+..+.. ..+.|.|+.... . +-++.| +| +..+.-++..+-...|++..|..-.+.+
T Consensus 283 ~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKA---EPHPDIALL--YVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999988754 666655533 334566653222 1 122333 44 4566677778888999999999999999
Q ss_pred hccCCCCcchhhhhhhhhhh-cCCcchHHHHHHHHHhCCCccCCce
Q 005268 529 FEVDSENVGYYVLMSNIYAN-VGKWEGVDEVRSLARDRGLKKTPGW 573 (705)
Q Consensus 529 ~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~ 573 (705)
....|. .++|.+|+++-.. .|+-.+++..+.+..+. ..+|.+
T Consensus 356 ~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 356 AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 999995 4788889988754 49988888887776654 344543
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0004 Score=58.84 Aligned_cols=96 Identities=16% Similarity=0.018 Sum_probs=81.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLM 542 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 542 (705)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999999888 23343 3466778899999999999999999999998875 4567889
Q ss_pred hhhhhhcCCcchHHHHHHHHHhCC
Q 005268 543 SNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 543 ~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+.++...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 158
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0042 Score=57.92 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=107.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005268 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV 498 (705)
Q Consensus 419 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 498 (705)
-++.+.+.......|.+....-...|.+.|++++|.+..+.. -+.+....=+..+.|..+++-|...+++|..
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555655544555444444456799999999999987642 2334555556778889999999999999964
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 499 RPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 499 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
--+..+.+.|..++.+ .+.+..|.-+|+++-+..|..+......+.++...|+|++|..+.+....+.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4466677777777654 3467899999999999887788888899999999999999999999998764
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.036 Score=55.50 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 450 (705)
.+..|.-+...|+...|.++-.+..-+|..-|...+.+++..+++++-.++... +-+++-|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556678888888888888888888888889999999888876665332 22347788888888888888
Q ss_pred HHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005268 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 512 (705)
Q Consensus 451 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 512 (705)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8888877542 22556788888888888877765543 555444444443
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00034 Score=66.34 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=78.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchH
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 555 (705)
+-+.+.+++++|+..|.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4466788999999999887 5555 6778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005268 556 DEVRSLARDR 565 (705)
Q Consensus 556 ~~~~~~m~~~ 565 (705)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887654
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00013 Score=54.02 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777777777777776654
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=97.49 E-value=0.0019 Score=56.32 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCc
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNMP-VR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (705)
....-+-..|++++|..+|+-+- .. -+..-|..|...|...++++.|+..|..+..++++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34445568899999999998762 22 35667899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 005268 553 EGVDEVRSLARD 564 (705)
Q Consensus 553 ~~a~~~~~~m~~ 564 (705)
++|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0027 Score=62.81 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=72.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVR-----PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
+...+.|++.+|.+.+.+. .+. |++..|........+.|+.++|+.--+++++++|.-..+|..-++.+...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999998776 344 4455566666677788999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhCC
Q 005268 552 WEGVDEVRSLARDRG 566 (705)
Q Consensus 552 ~~~a~~~~~~m~~~~ 566 (705)
|++|.+-+++..+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877653
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00052 Score=50.81 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 476 MVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999887 44564 66899999999999999999999999999999874
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.00086 Score=61.18 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
.+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555566666667777776666655 12222 356778888888888888888888888888888888888888888
Q ss_pred hhcCC
Q 005268 547 ANVGK 551 (705)
Q Consensus 547 ~~~g~ 551 (705)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77776
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.00069 Score=61.56 Aligned_cols=93 Identities=13% Similarity=-0.124 Sum_probs=72.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566666777778888888887776 22222 3478889999999999999999999999999998888888888
Q ss_pred hhh-------hcCCcchHHHHHHHH
Q 005268 545 IYA-------NVGKWEGVDEVRSLA 562 (705)
Q Consensus 545 ~~~-------~~g~~~~a~~~~~~m 562 (705)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888666666554
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0022 Score=65.92 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR 482 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 482 (705)
....+...|++++|+++|++.++ ..|+ ...+..+..++...|++++|+..++.+.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34566788999999999999999 4555 46777888899999999999999999875 355 45688889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005268 483 AGHLGMAHNFIQNM-PVRPDASIWGALLG 510 (705)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 510 (705)
.|++++|+..|++. .+.|+.......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999887 45666544444443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.29 E-value=0.0049 Score=56.20 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMV 477 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 477 (705)
.+..+...+...|++++|+..|++.++....|+ ...+..+...+.+.|++++|...+.+..+. .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 366667777777888888888887776433322 245666666777778888887777776643 34 334455556
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 478 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
.+|...|+...+..-++.. ...+++|.+.++++++++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544332221 112577888999999999876 4444444544443
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0029 Score=50.48 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...+++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666553 2322 344444445555555555555555443
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0015 Score=62.48 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=88.2
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCcchhhh
Q 005268 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG---NMELGAVASDRLFEVDSENVGYYVL 541 (705)
Q Consensus 467 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (705)
+-|.+.|--|...|.+.|+++.|..-|.+. .+.| +...+..+..++.... +..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347889999999999999999999999887 3444 5667777777665443 4578999999999999999999999
Q ss_pred hhhhhhhcCCcchHHHHHHHHHhCCCccCC
Q 005268 542 MSNIYANVGKWEGVDEVRSLARDRGLKKTP 571 (705)
Q Consensus 542 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 571 (705)
|+-.+...|++.+|...++.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654333
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.17 Score=50.67 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCc
Q 005268 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348 (705)
Q Consensus 269 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~ 348 (705)
.+..+.-+...|+...|.++-.+..-+|..-|-..+.+++..++|++-.++... . -.+.-|..++.+|.+.|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHHHHCCC
Confidence 344466667789999999999999889999999999999999999987765432 1 245788889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 390 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 390 (705)
..+|..+... ..+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 8888877665 1225678889999999988765
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.00057 Score=52.00 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=49.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
...+.+.+++++|...++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788889999999999999999888888888999999999999998888887654
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.21 E-value=0.52 Score=51.97 Aligned_cols=159 Identities=9% Similarity=0.009 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 402 WNAIISCHGIHGQGD---KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 402 ~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
-|.|+..+.+.++.. +|+-+++.-.... +-|..+-..++..|+-.|-...|.++|..+.-+ .|.-|...|- +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 577888888888765 5666666666632 334556677788999999999999999888655 6666644332 234
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchhhhhhhhhhhcCCc
Q 005268 479 LFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKW 552 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 552 (705)
.+...|++..+...++..- ...+..----+|.--.++|.+..-.++..---.+.-. -...-....+.....++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4556677776666554431 0001000111233334566665544432211112110 011112455566677777
Q ss_pred chHHHHHHHHH
Q 005268 553 EGVDEVRSLAR 563 (705)
Q Consensus 553 ~~a~~~~~~m~ 563 (705)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 77777766665
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.41 Score=51.63 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=177.4
Q ss_pred HCCCCCChhhHHh-----HHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC---HHHHHHHHhccCC-
Q 005268 122 LEGVSMDPITVAS-----ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALRVFDQMME- 192 (705)
Q Consensus 122 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~- 192 (705)
.-|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666555544 455566677788888877665321111 15677777777777632 3334444445544
Q ss_pred -CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCC----CCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhH
Q 005268 193 -RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI----QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVI 267 (705)
Q Consensus 193 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 267 (705)
..-++|..+.+---+.|+++-|..+++.=...+. -.+..-+...+.-+...|+.+...++.-.+.+.-
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------- 576 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------- 576 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-------
Confidence 4567888888888888999988888764322211 1122234444555566666666555554443321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCChhHHHHHH--HhhhhcCCCCCCcccccchhHHhh
Q 005268 268 IGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVF--QMMEECNEINPNQGTYVSILPAYS 344 (705)
Q Consensus 268 ~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~~~~~p~~~t~~~ll~a~~ 344 (705)
+.-+......+...|..++.+... .|..+ +-+.| +.++-.+++..| +.-.....+.+-........++|+
T Consensus 577 ---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 577 ---NRSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred ---HHHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 000001111122233333332211 11100 11111 112212222111 110000001111122223344444
Q ss_pred ccCchHHHH----------HHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC
Q 005268 345 HVGALRQGI----------KIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG 413 (705)
Q Consensus 345 ~~~~~~~a~----------~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 413 (705)
+........ ++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+..-+|-.-|---+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 443322111 11122211 1222222233334444556788888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHH
Q 005268 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 493 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 493 (705)
++++-+++-+.+. .++-|.....+|.+.|+.++|.+++.+.. |. .-.+.+|.+.|++.+|.++-
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 8877665554433 14556777888888888888888875432 11 14678888888888887765
Q ss_pred Hh
Q 005268 494 QN 495 (705)
Q Consensus 494 ~~ 495 (705)
-+
T Consensus 794 ~~ 795 (829)
T KOG2280|consen 794 AE 795 (829)
T ss_pred HH
Confidence 44
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.059 Score=56.51 Aligned_cols=195 Identities=14% Similarity=0.192 Sum_probs=102.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHH
Q 005268 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352 (705)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 352 (705)
.+.++-.|++.+|.++|. ++|.-..|+++|..|+- - -...-+...|+.++-
T Consensus 639 A~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRM-F----------D~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRM-F----------DYAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHH-H----------HHHHHHhhcCChHHH
Confidence 344566677888877775 45666677777766653 1 112223334444443
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005268 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432 (705)
Q Consensus 353 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 432 (705)
+.+...-.+. ..++.--.+...++...|+.++|..+. ..+|-.+-++++-+++-..
T Consensus 690 KmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~~---- 745 (1081)
T KOG1538|consen 690 KMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDKA---- 745 (1081)
T ss_pred HHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcchh----
Confidence 3333221111 111111133455666677777776653 3344445555554444322
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HH----
Q 005268 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASI-WG---- 506 (705)
Q Consensus 433 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~---- 506 (705)
+..+...+..-+-+...+.-|-++|..|-. ...++++....|+++||..+-++.| ..||+.. |.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 223444444444455556667777766632 2346677777778888887777775 3344321 11
Q ss_pred ------HHHHHHHhcCChhHHHHHHHHHhc
Q 005268 507 ------ALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 507 ------~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
---.++.+.|+..+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 112355566666777777776653
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.13 E-value=0.038 Score=54.92 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=48.4
Q ss_pred HHhcc-CcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHH
Q 005268 443 ACSHS-GLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNMP---VR-----PDAS-IWGAL 508 (705)
Q Consensus 443 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l 508 (705)
.|... |++++|.+.|+...+-+..... ...+..++..+.+.|++++|.++|++.. .+ .+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5555555555555443222211 1234456667777778888877776651 11 1111 12222
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
+-.+...||...|...+++..+.+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33455677888888888888888775
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0097 Score=58.89 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 479 (705)
.|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46667777777777888888888887532 2233445444443 344567777999999988764 4455678888999
Q ss_pred HHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 480 FGRAGHLGMAHNFIQNMP-VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
+.+.|+.+.|..+|++.- .-|. ..+|...+.--.+.|+++....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998872 2233 35999999999999999999999999999888643
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.52 Score=50.30 Aligned_cols=201 Identities=10% Similarity=0.138 Sum_probs=94.8
Q ss_pred CCChhhHHhHHHHhhcCCChHHHHHHHHHHHHh-CCC--------CchhHHHHHHHHHHccCCHHHHHHHHhccCCCCee
Q 005268 126 SMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLE--------FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVV 196 (705)
Q Consensus 126 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 196 (705)
.|.+..|..+.......-.++.|++.|-..... |+. .+...-.+=+.+| -|++++|++++-++..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466666666665555555555555554332110 110 0011111112222 37788888888877777643
Q ss_pred hHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHH
Q 005268 197 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD----LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 272 (705)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~l 272 (705)
|..+.+.|++-...++++. -|-..| ...+..+...++....++.|.+.+..--.. ...
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQ 828 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhH
Confidence 4555666666666555542 111111 123444444444444445444444332111 123
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHH
Q 005268 273 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 352 (705)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 352 (705)
++.|.+..++++-+.+-+.+++ |......|...+.+.|.-++|.+.|-+-.. |. ..+..|..++++.+|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHHH
Confidence 3444444444444444444433 233445556666666666666665543221 11 234455556665555
Q ss_pred HHHHH
Q 005268 353 IKIHA 357 (705)
Q Consensus 353 ~~~~~ 357 (705)
.++-+
T Consensus 898 velaq 902 (1189)
T KOG2041|consen 898 VELAQ 902 (1189)
T ss_pred HHHHH
Confidence 55433
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.015 Score=52.71 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMV 477 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 477 (705)
.|..+...+...|++++|+..|++.+.....|. ..++..+...+...|++++|+..++..... .|+ ...+..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 356666667777888888888887776422221 235666667777777777777777766542 332 23344444
Q ss_pred HHHH
Q 005268 478 DLFG 481 (705)
Q Consensus 478 ~~~~ 481 (705)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.11 E-value=0.0014 Score=51.41 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=47.6
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHH
Q 005268 412 HGQGDKALNFFRQMLDEGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A 489 (705)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|.. .....+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 56777888888887774321 1333444466777777777777777766 2 223322 3333446667777777777
Q ss_pred HHHHHh
Q 005268 490 HNFIQN 495 (705)
Q Consensus 490 ~~~~~~ 495 (705)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.00033 Score=52.46 Aligned_cols=52 Identities=12% Similarity=0.273 Sum_probs=35.4
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..|++++|+..++++++.+|+++.....++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777776665543
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.07 E-value=0.027 Score=49.66 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=106.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC-cCCcchHHHHHHHHHhcCCHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-KPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A 489 (705)
+.=+++..++-..+-.+ +.|....-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33344444443333333 567776667788888888999999988887764 44 44666777777888888888888
Q ss_pred HHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 490 HNFIQNM-PV-----RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 490 ~~~~~~~-~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
...+++. +. .||.. -.+...+...|..+.|+..|+.++.-.| ++..-...+..++++|+.+++..-+....
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888776 22 24433 3566788899999999999999999888 45666667788899999999886665554
Q ss_pred hC
Q 005268 564 DR 565 (705)
Q Consensus 564 ~~ 565 (705)
+.
T Consensus 221 d~ 222 (251)
T COG4700 221 DT 222 (251)
T ss_pred HH
Confidence 43
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.06 E-value=0.45 Score=48.36 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcc
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG 334 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 334 (705)
+.++..++....+.++..+|-+.+.-+.. +.|+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~---ldp~~s 332 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI---LDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh---cCCcch
Confidence 45778888888888999998888877765 666543
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.04 E-value=0.00019 Score=44.74 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=30.3
Q ss_pred HHHHhccCCCCcchhhhhhhhhhhcCCcchHH
Q 005268 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556 (705)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 556 (705)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.00073 Score=50.54 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=21.7
Q ss_pred cCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
.|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555432 22 3334444444444555555555444444
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.95 E-value=0.0014 Score=49.15 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHG-NMELGAVASDRLFEVDS 533 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 533 (705)
...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 446677777788888888888887766 34454 668888888999998 79999999999999887
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.012 Score=63.24 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhc--------CCHHHHHHHHH
Q 005268 429 GVRPDHITFVSLLTACSH-----SGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRA--------GHLGMAHNFIQ 494 (705)
Q Consensus 429 g~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 494 (705)
+.+.|...|...+.+... .+..+.|+.+|++..+ ..|+- ..|..+..++... ++++.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356677888888887543 2347799999998885 47864 3444443333221 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 495 NM---P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 495 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
+. + ...+..++..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|...++++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 233557788887777788999999999999999999 578999999999999999999999999877643
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.018 Score=50.71 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=92.9
Q ss_pred hHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--
Q 005268 460 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE-- 534 (705)
Q Consensus 460 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 534 (705)
..+...+.|++..-..|...+.+.|+..||...|++. .+.-|....-.+.++....++..+|...++.+.+-.|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344467888888889999999999999999999987 35568888889999999999999999999999998875
Q ss_pred CcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 535 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.|.....++..|...|++++|..-|+...+.-
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56677889999999999999999999988753
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.011 Score=47.56 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=60.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhhCCcCCcchHHH
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGV-RPDHITFVSLLTACSHSG--------LVSEGQRYFHMMQEEFGIKPHLKHYGC 475 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~~~ 475 (705)
.|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. ++-+.+.+++.|... +++|+.++|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 45555566899999999999999999 899999999998766532 345677788888765 78888888888
Q ss_pred HHHHHHh
Q 005268 476 MVDLFGR 482 (705)
Q Consensus 476 li~~~~~ 482 (705)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8876643
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.84 E-value=0.6 Score=46.40 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhcc-CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 379 (705)
...+..|...|++..|-+.+.++-+ .|... |+++.|.+.|..+.+. |.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~~---------------y~ 146 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAEL---------------YE 146 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHHH---------------HH
Confidence 3456677777777777777766654 34444 6677777766665442 33
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCcHHHH
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-----DHI-TFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a 453 (705)
..|....+..+ +..+...+.+.|++++|+++|++....-... +.. .|...+-++...|++..|
T Consensus 147 ~e~~~~~a~~~-----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 147 QEGSPHSAAEC-----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HTT-HHHHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCCChhhHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 33333333332 2345566777778888888887776643221 111 233333356667788888
Q ss_pred HHHHHHhHHhh-CCcCC--cchHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 005268 454 QRYFHMMQEEF-GIKPH--LKHYGCMVDLFGR--AGHLGMAHNFIQNMP 497 (705)
Q Consensus 454 ~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 497 (705)
.+.++...... ++..+ -.....|++++-. ...+++|..-|+.+.
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 88887765221 12112 1234455555533 235667777777664
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.82 E-value=0.018 Score=46.42 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHhHHHHhhcCC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSD--------NILSGLLIHLYIVKHGLEFNLFVS 167 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 167 (705)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556677777999999999999999999 899999999999887643 244577889999999999999999
Q ss_pred HHHHHHHHc
Q 005268 168 NNLINMYAK 176 (705)
Q Consensus 168 ~~Li~~y~~ 176 (705)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.80 E-value=0.0031 Score=64.22 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
..++.+..+|.+.|++++|+..|++. .++|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555555555555555555543 344442 23555555555555555555555555554
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.79 E-value=0.027 Score=48.96 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSG 448 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 448 (705)
.+...+...|++++|..+|+-.. ..+..-|..|..++-..|++++|+..|...... .|| +..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHcC
Confidence 34445567889999999888766 334445888888888899999999999988884 454 467777888888899
Q ss_pred cHHHHHHHHHHhHHhhC
Q 005268 449 LVSEGQRYFHMMQEEFG 465 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~ 465 (705)
+.+.|++.|+.....-+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999998887775433
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.069 Score=51.50 Aligned_cols=168 Identities=12% Similarity=0.047 Sum_probs=97.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcch------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc--
Q 005268 377 MYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH-- 446 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~-- 446 (705)
.+.+.|++++|.+.|+.+....+.+ .-.++.+|.+.+++++|+..|++.++. .|+. .-+...+.+.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhhhh
Confidence 3445677777777777766332222 223456667778888888888888773 3432 334333333321
Q ss_pred c---------------Cc---HHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005268 447 S---------------GL---VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 508 (705)
Q Consensus 447 ~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 508 (705)
. .+ ..+|...|+.+.+. -|+ ..-..+|...+..+...--..- -.+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~la~~e-~~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRLAKYE-LSV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 01 22344444444433 232 2223344433333210000000 134
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCc---chhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
..-|.+.|.+.-|..-++.+++--|+.+ .+...+..+|...|..++|..+.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4558888999999999999999877643 456678899999999999998877654
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=1 Score=48.22 Aligned_cols=381 Identities=15% Similarity=0.112 Sum_probs=199.0
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCC--------hhhHHhHHHHhhcCCChHHHH
Q 005268 79 ANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL-EGVSMD--------PITVASILPVCARSDNILSGL 149 (705)
Q Consensus 79 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--------~~t~~~ll~~~~~~~~~~~a~ 149 (705)
+++|.+..+.- |.+..|..+.....+.-.++-|...|-+... .|++.- ...-.+-+. +--|++++|.
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 45555555543 3445677777666666666666666655432 122110 000011111 2347888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCC--C---eehHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 005268 150 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER--D---VVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224 (705)
Q Consensus 150 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 224 (705)
+++-.+-++.+ -|.++.+.|++-...++++.-... | ...|+.+...+.....+++|.+.|..-...
T Consensus 755 k~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 88877665532 367778888888887777653321 1 246778888887777888888777654211
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH
Q 005268 225 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 304 (705)
Q Consensus 225 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 304 (705)
...+.++.....+++-+.+-.. ++.+....-.+.+|+.+.|.-++|.+.|-+-..|. ..+
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv 885 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV 885 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence 1233444444443333222221 67778888889999999999999988886655442 345
Q ss_pred HHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 005268 305 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 384 (705)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 384 (705)
..|...++|.+|.++-++..- |...|+ +. ..+-+++... .+ .--|..+.+.|+.
T Consensus 886 ~tCv~LnQW~~avelaq~~~l-----~qv~tl---ia--------k~aaqll~~~---------~~-~eaIe~~Rka~~~ 939 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQL-----PQVQTL---IA--------KQAAQLLADA---------NH-MEAIEKDRKAGRH 939 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----hhHHHH---HH--------HHHHHHHhhc---------ch-HHHHHHhhhcccc
Confidence 667788889999888766543 332221 11 1111222111 01 1235667778887
Q ss_pred HHHHHHHhhCCCC---CcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005268 385 DDAMSLFYQVPRS---SSVPWNAIISCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 385 ~~A~~~~~~~~~~---~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
-+|.+++.+|.++ ..+++..+=..|.- ..+..+++.-.++....|...+... +...|...++-++.
T Consensus 940 ~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~ 1012 (1189)
T KOG2041|consen 940 LDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRIL 1012 (1189)
T ss_pred hhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHH
Confidence 7777777777622 23333332222221 1123334444444444443322221 12223333333333
Q ss_pred HHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRPDASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
+..-+ -....|+-.|..--...|+.+.|+.---.+. +-|...+|..|.-+-+....+.-.-++|-++.
T Consensus 1013 ~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1013 ENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred Hhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 22111 1123345555555667788888876533332 23445555544433333333433444444433
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.018 Score=59.43 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred CcccccchhHHhhccCchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHH
Q 005268 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAI 405 (705)
Q Consensus 332 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~l 405 (705)
+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..+++.=. =+|..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5555556666666666666666666555443 222223333466666666666666666655433 2555556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 447 (705)
+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666555555555555555554443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.32 Score=45.63 Aligned_cols=232 Identities=11% Similarity=0.036 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHh-hccCc--hHHHHHHHHHHHHhCCCCchhHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY-SHVGA--LRQGIKIHARVIKNCLCFDVFVATC 373 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~-~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 373 (705)
...|+.-...+++....++|..-+....+.. .||. -|...=..+ .+.|. +-..+-+|..+...- ..-+++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHH
Confidence 3456666777777777777765555443311 1111 111100000 11121 122334444444421 112456
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCcch--------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPR--SSSVP--------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
|...|.-..-+++-...|+.-.. ..+.- -+.++..+.-+|.+.-.+.++++.++...+-++.....|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 66666655555555555554332 22222 355666666678888888899999987655566777888888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCcchHH-----HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-----CMVDLFGRAGHLGMAHNFIQNMPVR--PDASIWGALLGACRIHG 516 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g 516 (705)
-.+.|+.+.|..+|+...+. .-..+....+ .+...|.-+.++.+|...+.+.+.. .|+..-|+-.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88999999999999977654 2222322333 3334455666778888888777422 23444444433444567
Q ss_pred ChhHHHHHHHHHhccCCCCc
Q 005268 517 NMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~ 536 (705)
+...|.+..+.+.+..|...
T Consensus 301 ~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHhccCCccc
Confidence 77788888888888877543
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.75 E-value=0.033 Score=46.61 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=67.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHH
Q 005268 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLF 480 (705)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 480 (705)
.+..++-..|+.++|+.+|++.+..|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677889999999999999998876653 4677788889999999999999998876532111 112223344567
Q ss_pred HhcCCHHHHHHHHHh
Q 005268 481 GRAGHLGMAHNFIQN 495 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~ 495 (705)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999998887744
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.71 E-value=0.022 Score=56.46 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCChhHHH
Q 005268 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK------DVISWNTLITGYAQNGLASEAI 317 (705)
Q Consensus 244 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 317 (705)
++.+.|..||+..++. ++.+...|...++.+.+.++.+.|+.+|++.... ....|...+.--.+.|+.+.+.
T Consensus 50 ~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp S-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444455555555554 7888899999999999999999999999876533 3357999999888999999999
Q ss_pred HHHHhhhhcCCCCCCc
Q 005268 318 EVFQMMEECNEINPNQ 333 (705)
Q Consensus 318 ~~~~~m~~~~~~~p~~ 333 (705)
++.+++.+ ..|+.
T Consensus 128 ~v~~R~~~---~~~~~ 140 (280)
T PF05843_consen 128 KVEKRAEE---LFPED 140 (280)
T ss_dssp HHHHHHHH---HTTTS
T ss_pred HHHHHHHH---Hhhhh
Confidence 99988887 45553
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.69 E-value=0.026 Score=58.23 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 005268 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277 (705)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 277 (705)
..++|+.|.+.|..++++.+++.=..-|+-||.+|++.++..+...|++..|.++...++..+ ...+..++..-+..+.
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666666666665555 3344444443333344
Q ss_pred hc
Q 005268 278 KL 279 (705)
Q Consensus 278 ~~ 279 (705)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 43
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.68 E-value=0.017 Score=52.73 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=67.2
Q ss_pred HHhccC--CCCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcC--------------
Q 005268 84 KLFDDM--PVRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARS-------------- 142 (705)
Q Consensus 84 ~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 142 (705)
..|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666666666543 55565666677777778888888888888776542
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 005268 143 --DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179 (705)
Q Consensus 143 --~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 179 (705)
.+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688889999999999999999988888866554
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.67 E-value=0.0028 Score=42.38 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 503 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
.+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357888999999999999999999999999999988877764
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.63 E-value=0.97 Score=46.05 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=57.4
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 490 HNFIQNMPVRP----DASIWGALLGA--CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 490 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
..++++.++.| +...-|.|..| ...+|++.++.....-+.++.| ++.+|.+++-.+....+++||..++...
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455555544 34456666665 4689999999999999999999 8899999999999999999999998764
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.54 E-value=0.19 Score=50.80 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---Ccch----HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVPRS---SSVP----WNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 442 (705)
.++-.|....+++...++.+.+... ++.. -....-++-+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888877633 1111 1223344555 7888999999988776666777788877766
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHH----HHHHH---Hh----C-CCCC-
Q 005268 443 ACSH---------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM----AHNFI---QN----M-PVRP- 500 (705)
Q Consensus 443 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~----~-~~~p- 500 (705)
.|-. ....++|+..|.+. +.+.|+..+--.++-++...|.-.+ ..++- .. - ...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 23467777776643 4566765554444555555553222 22221 11 0 1223
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 501 -DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 501 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
|--.+.+++.++.-.||.+.|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33445788888999999999999999999888743
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.54 E-value=0.01 Score=57.72 Aligned_cols=61 Identities=10% Similarity=-0.085 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+--+...+...|++++|...|+++++..|+++ .++..++.+|...|++++|.++++...+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555432 23333455555556666666555555443
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.14 Score=47.86 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CChh--------HHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccc
Q 005268 269 GNAVVDMYAKLGIINSACAVFEGLPV--KDVI--------SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 338 (705)
Q Consensus 269 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 338 (705)
+++|...|.-..-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.+.++.+..+ ..-.-++...+.
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHH
Confidence 45666666655555555555554332 2222 335566666667788888888888887 433446666777
Q ss_pred hhHHhhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHH
Q 005268 339 ILPAYSHVGALRQGIKIHARVIKNCLC-----FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHG 410 (705)
Q Consensus 339 ll~a~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 410 (705)
+.+...+.||.+.+...++...+..-. ....+.......|.-.+++..|...|.+++.. |++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 788888899999999999977764323 33334444445566678888888889888744 4444666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHITFV 438 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 438 (705)
-.|+..+|++..+.|.+ ..|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 67899999999999998 566655444
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.25 Score=49.26 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---h-CCcCCcch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLD----EGV-RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE---F-GIKPHLKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~-~~~p~~~~ 472 (705)
+..+..++.-.|+++.|.+.|+.-.. .|- .....+..+|.+.|.-...++.|+.++.+-... . ...-....
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33445555556666666666654432 121 112334556666666667777777777643211 0 01112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 005268 473 YGCMVDLFGRAGHLGMAHNFI 493 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~ 493 (705)
|.+|..+|...|..++|+.+.
T Consensus 318 cwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHH
Confidence 444555555555555554443
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.45 E-value=0.021 Score=52.05 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 005268 396 RSSSVPWNAIISCHGI-----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS----------------GLVSEGQ 454 (705)
Q Consensus 396 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 454 (705)
.++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444444444444433 356666666777788888888888888888776542 2346688
Q ss_pred HHHHHhHHhhCCcCCcchHHHHHHHHHhcCC
Q 005268 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485 (705)
Q Consensus 455 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 485 (705)
+++++|.. +|+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 89999975 4999999999999999887775
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.40 E-value=0.072 Score=44.59 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHCCCCCCh--hhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCc---hhHHHHHHHHH
Q 005268 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDL--LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME---DVIIGNAVVDM 275 (705)
Q Consensus 201 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~~li~~ 275 (705)
+...+-..|+.++|+.+|++....|...+. ..+..+-+.+...|+++++..+++..... +|. +..+...+.-.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 345666778888888888888887766542 24555566666777777777777766654 222 22333333345
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005268 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGY 307 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 307 (705)
+...|+.++|...+-....++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665443333333444444333
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.37 E-value=0.0087 Score=59.13 Aligned_cols=129 Identities=10% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMM---QEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-------PV-RPDAS 503 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 503 (705)
.|..|.+.|.-.|++++|+..++.- .+.+|-.. ....++.+.+.+.-.|+++.|.+.++.. +. .-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666666667788899998877642 23344333 2356778888888899999998888654 11 12344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEV----D--SENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
+.-+|.+.|....+++.|+..+.+-+.+ + .....++..|+++|...|..+.|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888889998888775543 2 23456678899999999999999877766543
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.33 E-value=0.01 Score=44.96 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
..|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888877 3445 4667788888899999999999999999999997765544
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.023 Score=56.71 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCE
Q 005268 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 581 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 581 (705)
...++.|...|.+.+++..|+....++++++|+|..+...-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3456677778889999999999999999999999999999999999999999999999999875
Q ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHHHHHh
Q 005268 582 VDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611 (705)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 611 (705)
.|..+.+..++..+.+++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 34456666666666666654
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.28 E-value=1.1 Score=42.53 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT-A 443 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a 443 (705)
........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........ +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 33444444444555555544444432 12222244444444455555556666555555322221 11111112 4
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD--ASIWGALLGACRIHG 516 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 516 (705)
+...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 5556666666666655532 222 1222333333345566666666666555 22222 455666666666666
Q ss_pred ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.+.|...+.......|.....+..++..+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777766654444455555555555566666666655543
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.19 E-value=0.05 Score=52.90 Aligned_cols=92 Identities=8% Similarity=-0.012 Sum_probs=54.0
Q ss_pred hccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCh
Q 005268 445 SHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPD----ASIWGALLGACRIHGNM 518 (705)
Q Consensus 445 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~ 518 (705)
...|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+++- ..|+ ...|-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344556666666665554421111 01244455666666666666666665551 1122 33445556667788888
Q ss_pred hHHHHHHHHHhccCCCCc
Q 005268 519 ELGAVASDRLFEVDSENV 536 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~ 536 (705)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888654
No 215
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.13 E-value=0.67 Score=44.72 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=28.5
Q ss_pred HHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc----cchhHHhhccCchHHHHHHHHHHHHh
Q 005268 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTY----VSILPAYSHVGALRQGIKIHARVIKN 362 (705)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 362 (705)
....+...|++++|.+.|+++.. ..|+.... -.+..++.+.++++.|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444556666666666666655 33433211 12334444555555555555555543
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=2.8 Score=45.65 Aligned_cols=319 Identities=12% Similarity=0.044 Sum_probs=154.3
Q ss_pred HCCCCCChhhHHH-----HHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCC---HHHHHHHHhcCCC
Q 005268 223 QAGIQPDLLTLVS-----LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI---INSACAVFEGLPV 294 (705)
Q Consensus 223 ~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~ 294 (705)
.-|++.+..-|.. +++-+...+.+..|.++-..+...- .. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-cc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3456555554443 3445555666667776665553221 11 14566666666666532 2333444444444
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC---CcccccchhHHhhccCchHHHHHHHHHHHHhC------
Q 005268 295 --KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP---NQGTYVSILPAYSHVGALRQGIKIHARVIKNC------ 363 (705)
Q Consensus 295 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------ 363 (705)
.+.++|.....---+.|+.+-|..+++.=.....-.| +..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4567777777777778888888777654332111111 22233444555666666666665554443321
Q ss_pred -----CCCchhHHHHHH---------HHHHhcCCHHHHHHH-HhhCCC-----CCcchHHHHHHHHHhcCC---hHHHH-
Q 005268 364 -----LCFDVFVATCLV---------DMYGKCGRIDDAMSL-FYQVPR-----SSSVPWNAIISCHGIHGQ---GDKAL- 419 (705)
Q Consensus 364 -----~~~~~~~~~~li---------~~y~k~g~~~~A~~~-~~~~~~-----~~~~~~~~li~~~~~~g~---~~~A~- 419 (705)
.+.....|.-++ +.|-...+...+-.+ ++.... .-..........+.+... -.+|+
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 111111221111 111111111111111 111000 001112222233333222 11111
Q ss_pred ------HHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 005268 420 ------NFFRQMLD-EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 420 ------~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 492 (705)
.+.+.+.. .|..-...|.+--+.-+...|...+|.++-...+ -||...|.--+.+++..+++++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 11222211 1222233344444555666677777776654432 45666666667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 493 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
-++++ .+.-|.-...+|.+.|+.++|.+.+-+.-.+. -...+|.+.|++.+|.++-
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 66653 13445556677777777777777665543221 3455677777777776543
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=2 Score=43.31 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcch-------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc
Q 005268 378 YGKCGRIDDAMSLFYQVPRSSSVP-------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGL 449 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 449 (705)
..+.|.+..|.+.+.+....|+.. |........+.|+.++|+.--++... +.|..+ .+..-..++.-.+.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776665322222 44455556667777777777766665 444322 23333344555677
Q ss_pred HHHHHHHHHHhHH
Q 005268 450 VSEGQRYFHMMQE 462 (705)
Q Consensus 450 ~~~a~~~~~~m~~ 462 (705)
|++|.+-++...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.91 E-value=0.41 Score=50.53 Aligned_cols=210 Identities=14% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhccCC-C----------CCcchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCh
Q 005268 63 VFVAASLLHMYCRFGLANVARKLFDDMP-V----------RDSGSWNAMISGYCQSGN--AVEALDILDEMRLEGVSMDP 129 (705)
Q Consensus 63 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~-~----------~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 129 (705)
..-+.+-+.-|...|.+++|.++----. . -+.--++..=.+|.+-.+ +-+-+.-+++|+++|-.|+.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3344555566777888887765421100 0 011123333344544332 33444456677777877877
Q ss_pred hhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--------------CCe
Q 005268 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--------------RDV 195 (705)
Q Consensus 130 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------~~~ 195 (705)
.... ..|+-.|.+.+|.++|. +.|.+ |.-+.+|.....++.|.++...-.. +|+
T Consensus 636 iLlA---~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ 703 (1081)
T KOG1538|consen 636 LLLA---DVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI 703 (1081)
T ss_pred HHHH---HHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc
Confidence 6443 44667788888888774 34543 4456666666666666666543311 111
Q ss_pred ehHHHHHHHHHcCCChhhHHHHHHH------HHHCCCCCC---hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchh
Q 005268 196 VSWNSIIAAYEQSNDPITAHGFFTT------MQQAGIQPD---LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266 (705)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 266 (705)
.--.+-...+...|+.++|..+.-+ +.+-+-+.| ..+...+..-+.+...+..|.++|..+-..
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1112333445556666666654321 111122222 223333333344445555555555544322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 005268 267 IIGNAVVDMYAKLGIINSACAVFEGLPV 294 (705)
Q Consensus 267 ~~~~~li~~y~~~g~~~~A~~~f~~~~~ 294 (705)
.+++++....+++++|..+-++.++
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCcc
Confidence 2455666666666666666666654
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.88 E-value=2.2 Score=42.68 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=111.9
Q ss_pred hcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccc--cchhHHhhc---cCch
Q 005268 278 KLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY--VSILPAYSH---VGAL 349 (705)
Q Consensus 278 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~--~~ll~a~~~---~~~~ 349 (705)
+.|..+.|+..-+..-.. =.-.|.+.+...+..|+++.|+++++.-+...-+.++..-- ..++.+-+. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 455666555554443221 23456667777777788888887777665533344443321 122222111 1233
Q ss_pred HHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 005268 350 RQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD- 427 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 427 (705)
..++..-.+..+ +.||..-. -.-...|.+.|++.++-.+++.+-+....+--..+-.+.+.|+ .++.-+++...
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHH
Confidence 444444444433 33432221 2223566777777777777777765444443333333344444 33333333322
Q ss_pred cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH-hcCCHHHHHHHHHhC
Q 005268 428 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG-RAGHLGMAHNFIQNM 496 (705)
Q Consensus 428 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 496 (705)
..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.=. ..|+-.++...+.+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 1256664 455566666677777777766554443 44677777777766643 337777777766655
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.0084 Score=46.19 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEV----DSE---NVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655543 111 13345566667777777777776666554
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=0.45 Score=49.08 Aligned_cols=174 Identities=9% Similarity=0.100 Sum_probs=112.1
Q ss_pred CCHHHHHHHHhhCCCCCc---chH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---
Q 005268 382 GRIDDAMSLFYQVPRSSS---VPW--NAIISCHGIHG-----QGDKALNFFRQMLD-EGVRPDHI-TFVSLLTACSH--- 446 (705)
Q Consensus 382 g~~~~A~~~~~~~~~~~~---~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~--- 446 (705)
..+..++. -...++.+. ..| ...+.|..... ..+.|+.+|.+... ..+.|+.. .|..+..++..
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 33444444 233334455 557 66666655422 34578889999982 22677753 44443333221
Q ss_pred ------cCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 005268 447 ------SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGN 517 (705)
Q Consensus 447 ------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 517 (705)
.....+|.++-+... .+.| |......+..++.-.|+++.|...|++. ...|| ..+|-.....+...|+
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 234455666655555 3455 5667777777788888899999999988 46676 5678777888888999
Q ss_pred hhHHHHHHHHHhccCCCCcchhhh--hhhhhhhcCCcchHHHHHH
Q 005268 518 MELGAVASDRLFEVDSENVGYYVL--MSNIYANVGKWEGVDEVRS 560 (705)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~ 560 (705)
.++|.+.+++.++++|....+-+. .+++|...+ .++|.+++-
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 999999999999999976554443 344565544 566666654
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.61 E-value=0.015 Score=44.78 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-------P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444433 1 1122 44566667777777777777777777654
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.60 E-value=0.47 Score=39.56 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 490 (705)
..|..++..++..+...+. +..-++-++.-....-+-+-..+.++.+-+ -.| ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFD----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK----IFD----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-----------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh----hcC----------chhhcchHHHH
Confidence 3566777777777776532 333344343333333333344444444322 222 13456666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCc
Q 005268 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568 (705)
Q Consensus 491 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 568 (705)
..+-.+. .+....+.-++....+|.-+.-.+++..+.+-+..+|....-++++|.+.|+..++.+++.++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6665553 234445666788889999998889999988655557889999999999999999999999999999874
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.11 Score=45.83 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
....++..+...|++++|...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999999999999999999999999999988754
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.072 Score=44.00 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----chhhhhhhhhhhcCC
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV----GYYVLMSNIYANVGK 551 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 551 (705)
-+++..|++++|++.|.+. ..- .+...||.-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888776 222 3577888889999999999999999999888753322 346677888889999
Q ss_pred cchHHHHHHHHHhCCC
Q 005268 552 WEGVDEVRSLARDRGL 567 (705)
Q Consensus 552 ~~~a~~~~~~m~~~~~ 567 (705)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877764
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.17 E-value=0.056 Score=45.73 Aligned_cols=95 Identities=9% Similarity=0.153 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 447 (705)
..++.+++.++++.|+++....+++..-..|+.. -...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3456677777777777777777766553222111 000000 111233678888888888888888
Q ss_pred CcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 448 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 448 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
|++..|.++.+...+.|+++-+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888888888888888887666666666654
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=1.7 Score=40.59 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
..++.-..+|..+|.++.|-..+++.. -...+-++++|+++|++...
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHH
Confidence 345556667777777766655554331 11234456666666665544
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.09 E-value=0.1 Score=53.47 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcc----hHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 434 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 434 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
...++.+..+|.+.|++++|...|+...+ +.|+.. .|..+..+|...|++++|++.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45777888888888888888888887763 466643 4778888888888888888888776
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.07 E-value=0.5 Score=41.53 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCcCCcch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE----EFGIKPHLKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 472 (705)
...++..+...|++++|+++.+++.... +-|...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445666777888888888888888842 33556888888888888888888888876643 4577776544
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.03 E-value=0.35 Score=45.32 Aligned_cols=160 Identities=10% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHhcCCHHHHHHHHhhCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc---
Q 005268 378 YGKCGRIDDAMSLFYQVPRSSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH--- 446 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~--- 446 (705)
+...|++++|...|+.+...-+ ...-.++.++-+.|++++|...|++.++. -|+. .-+...+.+.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHh
Confidence 4455666666666666652111 11445566677777777777777777763 3332 222222222221
Q ss_pred ----------cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005268 447 ----------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHG 516 (705)
Q Consensus 447 ----------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 516 (705)
.+...+|...|+.+.+. |=......+|...+..+...--.. =-.+..-|.+.|
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc
Confidence 11223444444444433 222333344443333321000000 012445678889
Q ss_pred ChhHHHHHHHHHhccCCCCcc---hhhhhhhhhhhcCCcchHH
Q 005268 517 NMELGAVASDRLFEVDSENVG---YYVLMSNIYANVGKWEGVD 556 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 556 (705)
.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999998887543 3456788888888877443
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.01 E-value=1.8 Score=40.43 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCCc----ccccchhHHhhccCchHHHHHHHHHHHHh
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQ----GTYVSILPAYSHVGALRQGIKIHARVIKN 362 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 362 (705)
...+.+.|++++|.+.|+.+.. .-|++ ...-.+..++.+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~---~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLID---RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566666666666666665 22321 11223344455555555555555555443
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.97 E-value=5 Score=41.05 Aligned_cols=141 Identities=7% Similarity=0.064 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 005268 48 KKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD---SGSWNAMISGYCQSGNAVEALDILDEMRLEG 124 (705)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 124 (705)
.++-+++... +.|..+|-.|+.-|...|..++-++++++|..|- ..+|..-+++=....++.....+|.+.....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3444455443 5688899999999999999999999999998775 3479998988888889999999999988765
Q ss_pred CCCChhhHHhHHHHhhcCCChH------HHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---ccC------CHHHHHHHH
Q 005268 125 VSMDPITVASILPVCARSDNIL------SGLLIHLYIVK-HGLEFN-LFVSNNLINMYA---KFG------MMRHALRVF 187 (705)
Q Consensus 125 ~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~Li~~y~---~~g------~~~~A~~~f 187 (705)
.. ...|..-|.--.+.+... .-.+.++..+. .+++|- ...|+..+...- ..| +++..++.+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 44 444444444333333221 22344444444 234443 234554443321 223 345566666
Q ss_pred hccCC
Q 005268 188 DQMME 192 (705)
Q Consensus 188 ~~m~~ 192 (705)
.++..
T Consensus 185 ~ral~ 189 (660)
T COG5107 185 MRALQ 189 (660)
T ss_pred HHHHc
Confidence 66644
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.87 E-value=3.5 Score=38.82 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=125.9
Q ss_pred cchhHHhhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHH-HHHh
Q 005268 337 VSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIIS-CHGI 411 (705)
Q Consensus 337 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~---~~~~~li~-~~~~ 411 (705)
......+...+.+..+...+...... ........+..+...+...+....+...+......+. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33334444444555554444444331 2233444555556666666777777777776653222 22333333 6788
Q ss_pred cCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCH
Q 005268 412 HGQGDKALNFFRQMLDEGVRP----DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 486 (705)
.|+++.|...|.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...+++
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 8999999999998865 344 2234444444567788899999998888753 222 356788888888889999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 487 GMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
++|...+... ...|+ ...+..+...+...++.+.+...+++.....|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999888877 33444 455666666666777799999999999998886
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.82 E-value=0.2 Score=47.46 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=79.3
Q ss_pred hHHHHHhccCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCC---------
Q 005268 80 NVARKLFDDMP--VRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARSD--------- 143 (705)
Q Consensus 80 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--------- 143 (705)
-..+..|...+ ++|-.+|-+++..+... +..+=-...++.|.+-|+.-|..+|..||..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456777777 67888898888887654 556666667788999999999999999998875543
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH-HHHHHHHhcc
Q 005268 144 -------NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM-RHALRVFDQM 190 (705)
Q Consensus 144 -------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~f~~m 190 (705)
.-+-+..++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2234677788888888888888888888887776642 2333343344
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.79 E-value=0.045 Score=33.97 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 503 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999999863
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.76 E-value=0.28 Score=41.51 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc-----------------CCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK-----------------PHLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 433 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----------------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
|..++..++.++++.|+++....+.+.. +|+. |+.....+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3456677777777777777777766533 3444 4445555555555555555555555443
Q ss_pred C----CCCCCHHHHHHHHHH
Q 005268 496 M----PVRPDASIWGALLGA 511 (705)
Q Consensus 496 ~----~~~p~~~~~~~ll~~ 511 (705)
. +++-+..+|..|+.=
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHH
Confidence 3 333335555555543
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=8.8 Score=42.56 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchhhhhhhhhhhcCC
Q 005268 476 MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 551 (705)
++..+....+.+++..+.+..+.. ++..|-.+++-+...+.++.-.+...+.++ +..++--.-..+.+++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 344455666777777777777533 778888888888888876655555444443 222222222344555555554
No 238
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=1 Score=43.61 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCC-HHHHHH
Q 005268 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG---HLGMAHNFIQNM-PVRPD-ASIWGA 507 (705)
Q Consensus 433 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~~~ 507 (705)
|...|..|..+|...|+.+.|...|....+-- .+++..+..+..++..+. .-.++..+|+++ ..+|+ +.+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44567777777777777777777776665431 223445555555543332 345667777776 34454 445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
|..++...|++.+|...++.|++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 56678888888888888888888777553
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.58 E-value=0.075 Score=32.86 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 503 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 503 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888999999999999999999999865
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.46 E-value=0.25 Score=46.73 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=79.2
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----------
Q 005268 387 AMSLFYQVP--RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG----------- 448 (705)
Q Consensus 387 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 448 (705)
.+..|..+. ++|-.+|-+++..|..+ ++.+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 67788888888877654 566667777899999999999999999999876543
Q ss_pred -----cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCH
Q 005268 449 -----LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 449 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 486 (705)
.-+-++.++++|.. +|+.||.++-..|+++++|.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22458899999976 59999999999999999999864
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.26 E-value=7.3 Score=39.89 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=91.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchH-HHHH
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-GCMV 477 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li 477 (705)
..|...+..-.+..-.+.|..+|-+..+.| +.|+...+++.+.-++ .|+..-|..+|+.=... -||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 336666766666666778888888888887 5566667777776444 56777788888754433 3444333 3455
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 478 DLFGRAGHLGMAHNFIQNM--PVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
+-+.+.++-+.|..+|++. .+..+ ..+|..+|.--..-|++..+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677888888888888755 12223 5578888888888888888888888888887754
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.20 E-value=9.3 Score=40.82 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
+..+|...++.-.+.|+.+...-+|++..-+- ..-|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45566777777777788888887777765221 112444444444457877777777766664333333333222334
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAH---NFIQNM-PVRPDASIWGALLG-----ACR 513 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 513 (705)
+...|+.+.|..+++.+.+. . |+. ..-..-+....|.|+++.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 66788999999999998875 3 543 23333456677888888887 555443 22222223332222 244
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56788999999999999999998888888887766653
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.15 E-value=0.36 Score=50.80 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=85.5
Q ss_pred HHHhcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCH
Q 005268 408 CHGIHGQGDKALNFFRQ-MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 486 (705)
....+|+++++.++.+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 33456777777666641 1111122 23466677777888888888887544332 34667789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 487 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+.|.++.++.. +...|..|......+|+++.|++.+++.- -+..|.-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998887754 77899999999999999999999998754 35567777888888877777777666665
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.12 E-value=2 Score=37.32 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=21.6
Q ss_pred chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 380 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k 380 (705)
.++..+...+.......+++.+.+.+ ..+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 44455554555555555555555544 2444455555555544
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.93 E-value=1.4 Score=46.55 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHH
Q 005268 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++-.|...|+.+.-.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHH
Confidence 34567788888888877665 566888888888888998888888888765 445666666777777766
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 392 (705)
++...+...|- +|....++...|++++..+++.
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 66666665541 3333444445577766666553
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.93 E-value=0.24 Score=47.22 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 500 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
||..-| |+..+...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+.++|...+++..++
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444 5555666666666666666665544433 344555666666666666666666666554
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.58 Score=47.06 Aligned_cols=138 Identities=8% Similarity=-0.031 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCC
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 485 (705)
.+.|.+.|++..|...|++.+.. -+ +...-+.++...... . -...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA-L--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhhh
Confidence 45677788888888888876652 11 111111222222211 1 12356677788889999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchH-HHHHHHH
Q 005268 486 LGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV-DEVRSLA 562 (705)
Q Consensus 486 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 562 (705)
+.+|+..-++. ... +|....--=..+|...|+++.|+..|+++++++|+|-.+-.-|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766 333 45555555567899999999999999999999999988877787777666666555 6788888
Q ss_pred HhC
Q 005268 563 RDR 565 (705)
Q Consensus 563 ~~~ 565 (705)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.78 E-value=3 Score=36.22 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=44.4
Q ss_pred HhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChh
Q 005268 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212 (705)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 212 (705)
..++..+...+.......+++.+++.+. .+....|.|+..|++.+. .+....+.. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3444445455556666666666666552 456677777777776532 333333331 123333344555555555555
Q ss_pred hHHHHHHHH
Q 005268 213 TAHGFFTTM 221 (705)
Q Consensus 213 ~A~~~~~~m 221 (705)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555444
No 249
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=13 Score=40.91 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhh
Q 005268 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213 (705)
Q Consensus 164 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 213 (705)
..++...|+.+.-.|++++|-...-.|...+..-|.-.+.-+...++...
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34566677777777888888877777777777777777666666665544
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.63 E-value=12 Score=43.41 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCccc--ccchhHHhhccCchHHH
Q 005268 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT--YVSILPAYSHVGALRQG 352 (705)
Q Consensus 275 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~a~~~~~~~~~a 352 (705)
+|.++|+.++|.+ +|..+|+|.+|+.+-.++.. . -|... -..|..-+...++.-+|
T Consensus 961 ~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~-~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 961 MYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE-G---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC-C---HHHHHHHHHHHHHHHHHcccchhH
Confidence 4666666666654 44567888888887776653 1 11111 12344444455555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 005268 353 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 398 (705)
Q Consensus 353 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~ 398 (705)
-++..+.... ..-.+..|++...+++|..+-......|
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 4444433221 1233455666667777776655444333
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=93.43 E-value=0.81 Score=47.28 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHH---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005268 449 LVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG---------RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 516 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 516 (705)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4677888898887554667763 34444433221 123455667776665 3344 6777777777788888
Q ss_pred ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+++.|...|+++..++|+.+.++...++...-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886655
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.19 E-value=0.7 Score=45.50 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHcCChhHHHHHHHhhhhcC-CCCCCcccccchhHHhhccCchHHHH
Q 005268 307 YAQNGLASEAIEVFQMMEECN-EINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
+.+..+.++|+..+.+-.... ...---.++..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 345566666766665544300 01112234445555555555544443
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.10 E-value=2.9 Score=38.32 Aligned_cols=177 Identities=18% Similarity=0.166 Sum_probs=96.7
Q ss_pred CCHHHHHHHHhhCC--CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 005268 382 GRIDDAMSLFYQVP--RSS-SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 382 g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
|-+.-|+--|.+.. .|+ ...||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+=|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444444444332 233 23477777777778888888888888877 44542 23322223455567777777654
Q ss_pred HHhHHhhCCcCCcchHHHHH-HHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 458 HMMQEEFGIKPHLKHYGCMV-DLFGRAGHLGMAHNFI-QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
...-+. .|+. .|.+|- ..--+.-+..+|..-+ ++.. ..|..-|..-|-.+.--.--+ +.+++++.+-..++
T Consensus 157 ~~fYQ~---D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQD---DPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHhc---CCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 433322 3321 222222 1112334566665443 3332 345566766665544322211 12233333322222
Q ss_pred -------cchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 536 -------VGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 536 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
..+|.-|+.-|...|..++|..+|+..+..++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35688899999999999999999999886543
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.09 E-value=1 Score=38.58 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=37.4
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 480 FGRAGHLGMAHNFIQNM----PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34566666666666655 2111 2234445677788888888888888888888877653
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=2 Score=41.56 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=82.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA---LLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 519 (705)
.....|+..++...|+..... ..-+...--.|+..|...|+.++|..++..+|.+-...-|.. =+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888877754 222355667788889999999999999999875543333333 222333333333
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 520 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.. .+++-...+|+|...-..++..|...|+.++|.+.+-.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 234455678999888899999999999999999776666554
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.74 E-value=6.1 Score=41.24 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRP--DHITFVSLLTACSHSGLVSEGQRYFHMM 460 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m 460 (705)
+..+..+.|+.++|++.|++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444455566666666666665432 11 1124445555555556666655555443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.73 E-value=2.7 Score=36.10 Aligned_cols=114 Identities=10% Similarity=-0.007 Sum_probs=61.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 481 (705)
-.....+.|++++|.+.|+.+...- +.. ...-..++.++...+++++|...+++..+.+.-.|++ .|.....+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 3344456677777777777777642 221 2345556667777777777777777776654444432 3333333333
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 482 RAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
.-...+. .+..+ ..+-| .+....|...|++++..-|++.
T Consensus 94 ~~~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2222111 11111 11111 1234578888888888888654
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.45 E-value=12 Score=36.98 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCH
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGI--HGQGDKALNFFRQMLDEGVRPDH 434 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~ 434 (705)
++-.-+..+.+.++.+++.+++.+|... ...++...+..+.. ......|...+..++...+.|..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3333444444556666666666665521 22334444444421 22344566666666655455544
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.31 E-value=5.8 Score=40.46 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHHcCCChhHHHHHhccCCCC---Ccc-h---HHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHhHHH
Q 005268 68 SLLHMYCRFGLANVARKLFDDMPVR---DSG-S---WNAMISGYCQ---SGNAVEALDILDEMRLEGVSMDPITVASILP 137 (705)
Q Consensus 68 ~ll~~y~~~g~~~~A~~~f~~~~~~---~~~-~---~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 137 (705)
.++-.|....+++...++++.++.. +.. + -....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3333577788888888888887743 111 1 1123345556 7888889998888666666778888877776
Q ss_pred Hh
Q 005268 138 VC 139 (705)
Q Consensus 138 ~~ 139 (705)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 65
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=6 Score=38.39 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=89.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 486 (705)
.....|++.+|..+|+..... .|+ ...-..+..++...|+++.|..++..+-.+ --.........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 345667788888888877774 333 345556677788888888888888765432 0011111122334556666555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchhhhhhhhhhhcCCcch-HHHHHHHH
Q 005268 487 GMAHNFIQNMPVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLMSNIYANVGKWEG-VDEVRSLA 562 (705)
Q Consensus 487 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 562 (705)
.+..++-++....| |...--.|...+...|+.+.|...+-.++..+ -+|...-..|..++.-.|.-+. +.+.++++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55555555554455 45555667777788888888877766666543 3345555566666666564443 33444443
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=1.3 Score=42.27 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 476 MVDLFGRAGHLGMAHNFIQNM----PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
|...+...|++++|...|..+ |..|- +...--|.......|+.++|...++++.+.-|+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 444455555555554444333 11111 12333344445555566666666666666555543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.89 E-value=2.3 Score=44.14 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=79.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 489 (705)
-+..++.+-+++-++.++ +.||-.+-..++ +-.....+.++.+++++..+. |- ..+..- ......|. .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~ 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---F 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---h
Confidence 344556666677777777 667765443333 333455677888887766543 10 000000 00000111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 490 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 490 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
.+.+.+-..+|-..+=.-|...+++.|+.++|++.++++++..|. +......|+..+...+++.++..++.+-.+..+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111111222333345666667777777787777777776654 334556677777777777777777776554444
Q ss_pred ccCC
Q 005268 568 KKTP 571 (705)
Q Consensus 568 ~~~~ 571 (705)
.+..
T Consensus 327 pkSA 330 (539)
T PF04184_consen 327 PKSA 330 (539)
T ss_pred CchH
Confidence 3433
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.88 E-value=12 Score=35.67 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcc---hhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 507 ALLGACRIHGNMELGAVASDRLFEVDSENVG---YYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 507 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++..-|.+.|.+..|..-++++++--|+.+. .+..|..+|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456688889888888889998887665443 3456778889999999998887766543
No 264
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.82 E-value=25 Score=39.32 Aligned_cols=258 Identities=9% Similarity=0.020 Sum_probs=114.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHH
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 342 (705)
+.....-......+.+.++++...+ |..-+..+...-.....+....|+.++|......+=. .|- ..+.....++..
T Consensus 96 P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g~-~~p~~cd~l~~~ 172 (644)
T PRK11619 96 PPARSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TGK-SLPNACDKLFSV 172 (644)
T ss_pred chHHHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCC-CCChHHHHHHHH
Confidence 3344444455555566677777776 3322234444455566667777777766666666543 221 122334445544
Q ss_pred hhccCchHHHH--HHHHHHHHhC-----------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHH
Q 005268 343 YSHVGALRQGI--KIHARVIKNC-----------LCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 408 (705)
Q Consensus 343 ~~~~~~~~~a~--~~~~~~~~~g-----------~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~ 408 (705)
+.+.|.+.... +-+..+...| +.++ ......++..+.+ ...+...+.... ++...-...+-+
T Consensus 173 ~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 173 WQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHH
Confidence 44333322211 1111111111 1111 1122222222222 222222222221 111111111122
Q ss_pred HH--hcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhc
Q 005268 409 HG--IHGQGDKALNFFRQMLDEG-VRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483 (705)
Q Consensus 409 ~~--~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 483 (705)
+. ...+.+.|..++.+..... +.+... ....+.......+..+++...++..... ..+......-+..-.+.
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHc
Confidence 22 2445677777777764432 333322 2223322222222245566655543221 12333444444454577
Q ss_pred CCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 484 GHLGMAHNFIQNMPVR-PDASIW-GALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 484 g~~~~A~~~~~~~~~~-p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
++++.+...|..|+.. .+..-| -=+..+....|+.++|...|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888888877411 111112 1234555557888888888888643
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.64 E-value=0.26 Score=30.41 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888888888888888888888884
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=4.4 Score=39.78 Aligned_cols=111 Identities=9% Similarity=0.096 Sum_probs=46.5
Q ss_pred CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--H--HHHhccCcHHHHH
Q 005268 382 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL--L--TACSHSGLVSEGQ 454 (705)
Q Consensus 382 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~a~ 454 (705)
|+..+|-..++++. +.|..+|+--=.+|..+|+...-...+++.+-. ..||...|..+ + -++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44444444444443 334444544445555555555555555544432 23333222111 1 1223445555555
Q ss_pred HHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 455 RYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 455 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
+.-++.. .+.| |.-.-.++...+--.|+..|+.+++.+-
T Consensus 196 k~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 4443332 1222 2223333444444555555555555443
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.33 E-value=4.9 Score=43.11 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCCC-------CcchHHHHHHHHHhcCChHHH
Q 005268 347 GALRQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRS-------SSVPWNAIISCHGIHGQGDKA 418 (705)
Q Consensus 347 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A 418 (705)
.+.+.+.+++..+.+. -|+...+ ---...+...|++++|.+.|++.... ....+--+.-.+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666554 2333222 22234455566666666666654310 111133334445555666666
Q ss_pred HHHHHHHHHc
Q 005268 419 LNFFRQMLDE 428 (705)
Q Consensus 419 ~~~~~~m~~~ 428 (705)
.+.|.++.+.
T Consensus 325 ~~~f~~L~~~ 334 (468)
T PF10300_consen 325 AEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhc
Confidence 6666666653
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.19 E-value=7.2 Score=41.84 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=100.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhHHhhCCcCCcchH
Q 005268 404 AIISCHGIHGQGDKALNFFRQMLDEG-VRPDH-----ITFVSLLTACS----HSGLVSEGQRYFHMMQEEFGIKPHLKHY 473 (705)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 473 (705)
.+++...-.||-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444455666666776666655422 11111 12333333222 245778899999988865 5666555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh-hhhhh
Q 005268 474 GCM-VDLFGRAGHLGMAHNFIQNMPV-R-----PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV-LMSNI 545 (705)
Q Consensus 474 ~~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 545 (705)
... ...+...|++++|++.|+++-. + -....+--+...+....++++|...+.++.+...-+...|. ..+-.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 443 3566778999999999987521 1 12233344566677889999999999999987665555554 45666
Q ss_pred hhhcCCc-------chHHHHHHHHHhC
Q 005268 546 YANVGKW-------EGVDEVRSLARDR 565 (705)
Q Consensus 546 ~~~~g~~-------~~a~~~~~~m~~~ 565 (705)
|...|+. ++|.+++++....
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7788888 7888888776654
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.08 E-value=0.3 Score=30.71 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775543
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=1.4 Score=42.92 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=116.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHH----HHHHHhcCCH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHL 486 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~ 486 (705)
-+|+..+|...++++++. .+.|-..+.-.=.+|...|+.+.-...++++.. ...|+...|+.+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999985 566677888888899999999999998888764 346666555444 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchhhhhhhhhhhcCCcchHHHHHH
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRS 560 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 560 (705)
++|++.-++. .++| |.-.-.++......+|+..++.++.++-...-.. -.-.|-..+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 4544 4445566777778899999999987765543221 12234456666778899999999998
Q ss_pred HHHhCCCccCCc
Q 005268 561 LARDRGLKKTPG 572 (705)
Q Consensus 561 ~m~~~~~~~~~~ 572 (705)
.-+-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776655666554
No 271
>PRK09687 putative lyase; Provisional
Probab=90.87 E-value=18 Score=35.77 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCh----hHHHHHHHhh
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA----SEAIEVFQMM 323 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 323 (705)
+|..+....+..+.+.|..+....+..-+..+|...-...+.++.+-|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 33344444444444444332222222222233444444444445555442 3445555544
No 272
>PRK15331 chaperone protein SicA; Provisional
Probab=90.85 E-value=6.5 Score=34.72 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 488 (705)
-+.|++++|..+|+-+.. ..|... -+..|..+|-..+.+++|...|.....- . .-|+..+-.....|...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555544 222222 2233333333445555555555443321 1 1122222223444555555555
Q ss_pred HHHHHHhC
Q 005268 489 AHNFIQNM 496 (705)
Q Consensus 489 A~~~~~~~ 496 (705)
|...|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55555444
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.75 E-value=0.84 Score=41.09 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=64.4
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 479 LFGRAGHLGMAHNFIQNM-PVRP------DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
-+.+.|++++|..-|..+ ..-| ..+.|..-..+..+.+.++.|+.-..++++++|.+..+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777776666554 1112 233444445667788889999999999999999887777778889999999
Q ss_pred cchHHHHHHHHHhCC
Q 005268 552 WEGVDEVRSLARDRG 566 (705)
Q Consensus 552 ~~~a~~~~~~m~~~~ 566 (705)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988887753
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.75 E-value=5.8 Score=39.41 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhhCCcCCcchHHHHHHH
Q 005268 416 DKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGL--VSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 479 (705)
+.+..+|+.+.+.|+..+.. ....+|..+..... +..+.++++.+.+. |+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 56778888888888776543 34444443333222 45788888888876 999988888766543
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.68 E-value=20 Score=41.62 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 454 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 454 (705)
++.--+.|.+.+|..++..-.+.-.+.|.+...-+...+.+++|.-.|+..-+ ..-.+.+|-..|+|+++.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334445555555544332222223333333444444555555555443322 112344555566666666
Q ss_pred HHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 455 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 455 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
.+...+.. +-..-..+-..|+.-+...++.-||-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 65544321 11111112244555555556555555555544
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.39 E-value=9.9 Score=32.03 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 463 (705)
-+......|+-++-.+++.++... -+|++.....+.+||.+.|+..++.+++.+.-+.
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345556666666666666666543 3566666666777777777777777777666654
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.92 E-value=18 Score=34.44 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=104.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcch------HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHH
Q 005268 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFV 438 (705)
Q Consensus 366 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 438 (705)
|-...|+.-++-+ +.|++++|.+.|+.+....+.+ --.++-++-+.+++++|+..+++.+..- -.|| .-|.
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 4445666555544 6799999999999998443333 3445667778999999999999998842 2233 3344
Q ss_pred HHHHHHh---ccCc-------HHHHHHHHHHhHHhhC---CcCCcch------------HHHHHHHHHhcCCHHHHHHHH
Q 005268 439 SLLTACS---HSGL-------VSEGQRYFHMMQEEFG---IKPHLKH------------YGCMVDLFGRAGHLGMAHNFI 493 (705)
Q Consensus 439 ~ll~a~~---~~g~-------~~~a~~~~~~m~~~~~---~~p~~~~------------~~~li~~~~~~g~~~~A~~~~ 493 (705)
..|.+.+ ...+ ..+|..-|+...+++. ..||... =-.+..-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 4444443 3332 2345555555555532 1222211 112345678889888888777
Q ss_pred HhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 494 QNMP-VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 494 ~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
++|- .-|+ ....--+..+|...|-.++|....+-+-...|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 7772 1122 23455567889999999999888766666667554
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=16 Score=34.47 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhh
Q 005268 300 WNTLITGYAQNGLASEAIEVFQMM 323 (705)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m 323 (705)
|+--...|..+|.++.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 444555666666666555555443
No 279
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.65 E-value=2 Score=35.79 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-C-C---HHHHHHHHHHHHhc
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-P-D---ASIWGALLGACRIH 515 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p-~---~~~~~~ll~~~~~~ 515 (705)
+.+..|+++.|++.|..... +-| ....||.-..+|--+|+.++|++-+++. ... | . -..|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34455566666666655442 222 4445666666666666666665555544 110 1 1 11222233446666
Q ss_pred CChhHHHHHHHHHhccC
Q 005268 516 GNMELGAVASDRLFEVD 532 (705)
Q Consensus 516 g~~~~a~~~~~~~~~~~ 532 (705)
|+.+.|..-|+.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77776666666655544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.11 E-value=2.4 Score=41.25 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLD-----EGVRPDHITFVS 439 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 439 (705)
..++..++..+..+|+.+.+...+++... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788888888988888888887763 4455589999999999999999988888765 577777665555
Q ss_pred HHHH
Q 005268 440 LLTA 443 (705)
Q Consensus 440 ll~a 443 (705)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.79 E-value=8.4 Score=42.94 Aligned_cols=214 Identities=13% Similarity=0.070 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhccC---CCCeehHHHHHHHHHcCCC-------hhhHHHHHHHHHHCCCCCChhh--
Q 005268 165 FVSNNLINMYAKFGMMRHALRVFDQMM---ERDVVSWNSIIAAYEQSND-------PITAHGFFTTMQQAGIQPDLLT-- 232 (705)
Q Consensus 165 ~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t-- 232 (705)
.+| ++|-.+.|+|++++|.++..+.. ++....+-..+..|..+.+ -++...-|++..+.....|++-
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 344 46777889999999998883332 2333456666777766532 2345555666555444335542
Q ss_pred HHHHHHHHHccC-Ch-hhHH------HHHHHHHHhcCCC----chhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH
Q 005268 233 LVSLTSIVAQLN-DC-RNSR------SVHGFIMRRGWFM----EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISW 300 (705)
Q Consensus 233 ~~~ll~a~~~~~-~~-~~a~------~i~~~~~~~g~~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 300 (705)
.-.++..|--.. .. +.+. .+.-.+++...-. .+..++..|-+...+-| ...|.. ..+...|
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y 264 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY 264 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH
Confidence 223333332211 11 1111 1111122222000 11222222222222221 122222 1222222
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHH
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYG 379 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~ 379 (705)
...+.-.|+++.|++.+.+. .+...|.+.+...+.-+.-+.-.+... ..+.... -.|...-+..||..|.
T Consensus 265 ---f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 265 ---FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp ---HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred ---HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 34456689999999998872 335556666665555443332222111 2221111 0111245667777776
Q ss_pred h---cCCHHHHHHHHhhCC
Q 005268 380 K---CGRIDDAMSLFYQVP 395 (705)
Q Consensus 380 k---~g~~~~A~~~~~~~~ 395 (705)
+ ..+..+|.++|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 456778887776655
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.20 E-value=46 Score=36.73 Aligned_cols=211 Identities=11% Similarity=0.102 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCcc-hHHHHHHHHH----hcCChHHHHHH
Q 005268 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK-CGRIDDAMSLFYQVPRSSSV-PWNAIISCHG----IHGQGDKALNF 421 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k-~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~----~~g~~~~A~~~ 421 (705)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|......+-. +.-.+...|. ...+.+.|..+
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 345566666665555532 22222111111111 23455666666655533322 2222222221 22356677777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHH-----Hh--cCCHHHHHHHHH
Q 005268 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF-----GR--AGHLGMAHNFIQ 494 (705)
Q Consensus 422 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~~~ 494 (705)
+.+..+.| .|...--...+..+.. +.++.+.-.+..+... |.+-....-..+.+.. .+ ..+.+.+..++.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 77777766 3332222233333333 5555555444444322 3222111111111111 11 124555666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc-C--CcchHHHHHHHHHhC
Q 005268 495 NMPVRPDASIWGALLGACRIH----GNMELGAVASDRLFEVDSENVGYYVLMSNIYANV-G--KWEGVDEVRSLARDR 565 (705)
Q Consensus 495 ~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 565 (705)
+....-+......|...|..- .+.+.|...+.++-+.. +.....|+.++-.. | .+..|.++++.....
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 654344444444444444332 24666777666665554 45555666655331 1 157777777776653
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.01 E-value=1.5 Score=29.01 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 435 (705)
.|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 356667777777777777777777777 455543
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.57 E-value=1.2 Score=28.03 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQML 426 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~ 426 (705)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666677776666644
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.40 E-value=37 Score=34.78 Aligned_cols=147 Identities=7% Similarity=-0.053 Sum_probs=78.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC--cc
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LK 471 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 471 (705)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+.++|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344558888888889999999999888888744222 2233333444556678888888888777652 11111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 472 HYGCMVDLFGRAGHLGMAHNF-IQNMPVRPDASIWGALLGACRIH------GNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...|+++.++.|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012222333333333 77888999999999999987777776665
Q ss_pred hh
Q 005268 545 IY 546 (705)
Q Consensus 545 ~~ 546 (705)
.+
T Consensus 301 ~~ 302 (352)
T PF02259_consen 301 FN 302 (352)
T ss_pred HH
Confidence 54
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.07 E-value=14 Score=32.50 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=47.9
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a 521 (705)
-...++.+++..++..+. -+.|... .-..-.-.+.+.|++.+|..+|+++. ..|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345567777777777665 3455432 22223345567777888877777773 234444445666655544433333
Q ss_pred HHHHHHHhccCC
Q 005268 522 AVASDRLFEVDS 533 (705)
Q Consensus 522 ~~~~~~~~~~~p 533 (705)
....+++++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 334455555554
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.99 E-value=2.8 Score=40.81 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCChhhHHh
Q 005268 65 VAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRL-----EGVSMDPITVAS 134 (705)
Q Consensus 65 ~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 134 (705)
++..++..+..+|+.+.+...+++... -|...|..++.+|.++|+...|+..|+++.+ .|+.|-..+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 566677777777877777777776653 3556788888888888888888888777754 355555444433
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.64 E-value=9.7 Score=33.76 Aligned_cols=118 Identities=15% Similarity=0.082 Sum_probs=52.0
Q ss_pred ccCCHHHHHHHHhccCCCCeehHHHHH-----HHHHcCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHH--HHccCChh
Q 005268 176 KFGMMRHALRVFDQMMERDVVSWNSII-----AAYEQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSI--VAQLNDCR 247 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a--~~~~~~~~ 247 (705)
+.+..++|+.-|..+.+.+--+|-.|. ....+.|+...|...|.+.-...-.|-.. -...+=.+ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334455555555555444333333322 23344555555555555554433333222 11111111 12233333
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 005268 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 294 (705)
Q Consensus 248 ~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 294 (705)
....-.+-+...+ .+.-.....+|.-+-.|.|++.+|.+.|..+..
T Consensus 150 dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3333333322222 333344445555555666666666666666543
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.49 E-value=17 Score=32.37 Aligned_cols=134 Identities=7% Similarity=0.032 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-CCHHHHHHHHhcCC
Q 005268 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL-GIINSACAVFEGLP 293 (705)
Q Consensus 215 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~ 293 (705)
++.++.+.+.+++|+...+..+++.+...+....-.++.. .+-++++..+...|++.-.+. .-.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566677778888888888888888888887655444433 332444555544444432221 11344555555543
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHH
Q 005268 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361 (705)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 361 (705)
..+..++..+...|++-+|+++.+.... -+......++.+..+.+|...--.++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2455667788899999999998877533 1222334566666666666555555555544
No 290
>PRK09687 putative lyase; Provisional
Probab=86.46 E-value=36 Score=33.66 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005268 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445 (705)
Q Consensus 366 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 445 (705)
++..+-...+.++++.|+.. |...+-...+.+. ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 45556666667777777643 4333333332222 234566777777775 688888887763 456655555555543
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.18 E-value=1.3 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
.|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 467778888888888888888888887 5554
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.15 E-value=15 Score=33.46 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVP 395 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~ 395 (705)
+..+.+.|.+.|+.+.|.+.|.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4445555555555555555554444
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=5.6 Score=38.69 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=71.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCc-----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005268 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SSS-----VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436 (705)
Q Consensus 363 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 436 (705)
|.+....+...+++.-....+++++...+-++.. ++. .+-.+.+. ++..-++++++.++..=++-|+-||..|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 4555666666777777777788888887766652 111 01111122 2333467899999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEE 463 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 463 (705)
++.++..+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999988887766644
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.18 E-value=14 Score=32.80 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=26.6
Q ss_pred HcCCChhHHHHHhccCCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHC
Q 005268 74 CRFGLANVARKLFDDMPVRDSGSWNAMI-----SGYCQSGNAVEALDILDEMRLE 123 (705)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 123 (705)
++.+..++|+.-|..+...+-.+|-.|. ...++.|+..+|+..|.+.-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3445556666666665555444444332 2344556666666666665443
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.03 E-value=22 Score=31.79 Aligned_cols=131 Identities=10% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHHhHhCCCCCCccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC-CChhHHHHHhccCCCCCc
Q 005268 16 DCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF-GLANVARKLFDDMPVRDS 94 (705)
Q Consensus 16 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~-g~~~~A~~~f~~~~~~~~ 94 (705)
+..+. +...++.|+...+..+++.+.+.+...+++..+.-.-+.++..+.-.|++.-.+. .-..-|...+.++.
T Consensus 15 EYirS-l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 15 EYIRS-LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHH-HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 34444 5566777777777777777766665444444333333333444444443332211 01222333333332
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHH
Q 005268 95 GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYI 155 (705)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 155 (705)
..+..++..+...|++-+|+++.++... .+......++.+....+|...=-.++...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2456666777777777777777666422 12222344455555555544444444433
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.95 E-value=45 Score=33.47 Aligned_cols=162 Identities=9% Similarity=0.098 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc---ccccchhHHhhccCchHHHHHHHHHHHHhCC-----CCchh
Q 005268 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ---GTYVSILPAYSHVGALRQGIKIHARVIKNCL-----CFDVF 369 (705)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~ 369 (705)
.+|-.+..++-+.-++.+++.+-+.-....|..|.. ....++-.+....+.++++.+.|+.+.+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 345555555555555555555544433323444421 1223455666677778888888877765321 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCcch-H-----HHHHHHHHhcCChHHHHHHHHHHHH----cCCCC
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVP-------RSSSVP-W-----NAIISCHGIHGQGDKALNFFRQMLD----EGVRP 432 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~-~-----~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 432 (705)
++.+|-..|.+..++++|.-...+.. -.|... | .-|.-++...|...+|.+.-++..+ .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77788888888888887765443322 223222 2 2234455666666666665555433 23222
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 005268 433 DH-ITFVSLLTACSHSGLVSEGQRYFHM 459 (705)
Q Consensus 433 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 459 (705)
-. .....+...|...|+.+.|+.-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22 2334445556666666666655543
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.94 E-value=2.1 Score=37.55 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 482 RAGHLGMAHNFIQNMP-VRPDASIWGA-LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
+.++.+++..++..+. .+|....... -...+...|++.+|+++++.+.+-.|..+..-.+++..+...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4456666666665552 3443332221 12334455666666666666555555554444444444444443
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.47 E-value=25 Score=34.12 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=50.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
....|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--+|.+-++.+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 346788999999999999999999999999999999999999998888887777654
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.45 E-value=9.6 Score=34.63 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc------chH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL------KHY 473 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~ 473 (705)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+......-..|. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 6778888999999999999999998876666654 56777888888889988888877765432111122 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 005268 474 GCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
..|. +...|++.+|-+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 2222 23567899988887665
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=79 Score=35.62 Aligned_cols=75 Identities=7% Similarity=0.028 Sum_probs=38.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCC
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 485 (705)
+..+.+..+++.++.+.+..-.. ++..|..+|+.+.+.+.++.-.+...+..+. =...+...-..+++.+++.+.
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~-I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEA-IEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHH-HHhcccCCHHHHHHHHhcCCc
Confidence 34445556666666665554332 5566777777777766555444433333221 111111222345667777764
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.18 E-value=44 Score=34.20 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 501 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
...+|..+...++++|+++.|...+.++....+. .+.....-+......|+-++|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999999999886532 3455666788889999999999988887763
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.13 E-value=0.91 Score=39.67 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=54.8
Q ss_pred ccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 005268 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415 (705)
Q Consensus 336 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 415 (705)
...++..+.+.+.+.....+++.+.+.+...+....+.++..|++.+..++..++++.... .....++..+.+.|.+
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 3467788888888888889999998877667788999999999998777777776653222 2223344444444444
Q ss_pred HHHHHHH
Q 005268 416 DKALNFF 422 (705)
Q Consensus 416 ~~A~~~~ 422 (705)
++|.-++
T Consensus 87 ~~a~~Ly 93 (143)
T PF00637_consen 87 EEAVYLY 93 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 303
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.82 E-value=23 Score=38.88 Aligned_cols=182 Identities=19% Similarity=0.312 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc----------ccccchhHHhhccCchHHHHHHHHHHHHh-C-CCC
Q 005268 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ----------GTYVSILPAYSHVGALRQGIKIHARVIKN-C-LCF 366 (705)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~ 366 (705)
+-..++-.|-...+++..+++.+.++. + ||. +.|.-.++---+-|+-+.|....-.+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 344566677777788888888888765 2 321 23444444444567777787776666554 2 233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT---FVSLLTA 443 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 443 (705)
++|+-||++-+ .|- +-+.|...+..+.|.+.|++..+ +.|+..+ +..|+.+
T Consensus 279 ---------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 35667776532 221 12334455667789999999988 7887653 4444433
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 523 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 523 (705)
-.+ .++...+ +... |+ .|-.+++|.|.++.-.++++-. ..+.+-.-.+|+.+|.+
T Consensus 333 aG~--~Fens~E----lq~I-gm--------kLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLE----LQQI-GM--------KLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHH----HHHH-HH--------HHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 1222222 1111 22 2456789999998887777432 33555667789999999
Q ss_pred HHHHHhccCCCC
Q 005268 524 ASDRLFEVDSEN 535 (705)
Q Consensus 524 ~~~~~~~~~p~~ 535 (705)
+.+.|++++|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999999854
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.80 E-value=49 Score=32.96 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc--CC----ChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHccCCH
Q 005268 110 AVEALDILDEMRLEGVSMDPITVASILPVCAR--SD----NILSGLLIHLYIVKHGL---EFNLFVSNNLINMYAKFGMM 180 (705)
Q Consensus 110 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~~~g~~ 180 (705)
+++.+.+++.|.+.|.+-+.++|.+..-.... .. ....++.+|+.|.+..+ .++..++..|+.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888888888887665444433 22 24568888999888653 3455666666554 33333
Q ss_pred ----HHHHHHHhccCC-----CCe-ehHHHHHHHHHcCCC--hhhHHHHHHHHHHCCCCCChhhHHHH
Q 005268 181 ----RHALRVFDQMME-----RDV-VSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDLLTLVSL 236 (705)
Q Consensus 181 ----~~A~~~f~~m~~-----~~~-~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l 236 (705)
+.++..|+.+.+ .|. ...+.++...-.... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 344555555433 222 222222222211111 45788888888888888877776544
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.30 E-value=83 Score=35.22 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 005268 480 FGRAGHLGMAHNFIQNMPVRP 500 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~p 500 (705)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 568899999999999998777
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.28 E-value=4.3 Score=35.02 Aligned_cols=52 Identities=6% Similarity=-0.033 Sum_probs=34.8
Q ss_pred cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.++.++++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666677666666666666777777777777776665543
No 307
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=83.27 E-value=60 Score=33.57 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 176 (705)
-|-++.-|...|+..+|.+..+++...- -.+...-.++..+. .-..+.-+.-.+.+.+...+...-+.+..++.|
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vsf-fhhe~vkralv~am----e~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVSF-FHHEGVKRALVDAM----EDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCCc-hhhHHHHHHHHHHH----hhhhcccceeccchhhhhhcchhhhccccCchh
Confidence 4566778888999888888887775321 11222222222222 111111111111222222233333444455554
Q ss_pred cC--------CHHHHHHHHhccCCCCe---------------------------ehHHHHHHHHHcCCChhhHHHHHHHH
Q 005268 177 FG--------MMRHALRVFDQMMERDV---------------------------VSWNSIIAAYEQSNDPITAHGFFTTM 221 (705)
Q Consensus 177 ~g--------~~~~A~~~f~~m~~~~~---------------------------~~~~~li~~~~~~g~~~~A~~~~~~m 221 (705)
.+ ++..|...|+.+..+++ .....+|.-|...|+..+..+.++++
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHc
Confidence 43 24456777776633110 12346777888888887777777654
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.20 E-value=25 Score=33.53 Aligned_cols=231 Identities=13% Similarity=0.139 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHhcCCC----C---ChhHHHHHHHHHHHcCChhHHHHHHHhhhhc--CCCC--CCcccccchhHHhhccC
Q 005268 279 LGIINSACAVFEGLPV----K---DVISWNTLITGYAQNGLASEAIEVFQMMEEC--NEIN--PNQGTYVSILPAYSHVG 347 (705)
Q Consensus 279 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~--p~~~t~~~ll~a~~~~~ 347 (705)
....++|..-|+.+.+ + .-.+...+|..+.+.+++++.++.+.+|..- ..+. -+....++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456667666665431 1 2234456777788888888888887777530 0111 12334566666666555
Q ss_pred chHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC------------CCc---chHHHHHH
Q 005268 348 ALRQGIKIHARVIKN-----CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR------------SSS---VPWNAIIS 407 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------------~~~---~~~~~li~ 407 (705)
+.+.-..+++.-++. +-..--.+-+.|...|...|.+.+-.+++.++.+ ++. ..|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555443321 1111122334566667777777777777665531 111 22666677
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----ccCcHHHHHH-HHHHhHHhhCCcCCc-----chHHH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACS-----HSGLVSEGQR-YFHMMQEEFGIKPHL-----KHYGC 475 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~m~~~~~~~p~~-----~~~~~ 475 (705)
.|....+-.+-..+|++.+.-. --|- .....++.-|. +.|.+++|.. +|+.. +.|.-.-++ --|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHH
Confidence 7887787777778888776522 2233 33445555553 5677877764 44433 333222222 23555
Q ss_pred HHHHHHhcC----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005268 476 MVDLFGRAG----HLGMAHNFIQNMPVRPDASIWGALLGACRIH 515 (705)
Q Consensus 476 li~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 515 (705)
|.+++.+.| +-+||.- .+..|.......|+.+|..+
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 667777766 2222211 01335566778888887654
No 309
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.13 E-value=9 Score=32.40 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHhc-cCCCCcch-hhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 506 GALLGACRIHG---NMELGAVASDRLFE-VDSENVGY-YVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 506 ~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
-.+.++..+.. ++.+++.+++.+.+ -.|....- ...|+-.+++.|+++.+.++.+...+.
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444433 44566777777775 33432222 233555677777777777777766554
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.09 E-value=2.2 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
|..+...|...|++++|++.|++.++ +.|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 55667777778888888888888777 4454
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.02 E-value=1.5 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=26.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 507 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
.+.-|+.+.|++++|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355688999999999999999999999886543
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.52 E-value=20 Score=28.51 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 439 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 439 (705)
..+...|++++|..+.+...-||..+|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44567899999999999999999999988755 35677777777788888876 666666644
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=13 Score=39.69 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=99.2
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
-.|+++.|..++..++++ .-+.++.-+...|..++|++ +.||+. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457888888877777632 23455566667777777765 344442 2322 346788898888765
Q ss_pred HhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 459 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 459 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
+.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+-+.-..+.....+....|..
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 432 44578899999999999999999998764 2667777778888866555555555444444422
Q ss_pred hhhhhhhhhhcCCcchHHHHHHH
Q 005268 539 YVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 539 ~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
-.+|...|+++++.+++..
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHh
Confidence 2356778999998887654
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.12 E-value=1.7 Score=42.59 Aligned_cols=112 Identities=9% Similarity=0.037 Sum_probs=76.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD---ASIWGALLGACRIH 515 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~ 515 (705)
-.+-|.+.|.+++|+..+..-. .+.| +...+..-..+|.+..++..|+.-.+.+- .-| ...|.--..+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 3556888999999999998665 4567 78888888899999999988876555441 111 12233333334455
Q ss_pred CChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 516 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
|+..+|.+-++.+++++|++.. |-..|++.....|+.-+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIAT 218 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHh
Confidence 7889999999999999998543 444455555555554443
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.24 E-value=1.7e+02 Score=37.43 Aligned_cols=279 Identities=12% Similarity=0.045 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-CCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhc
Q 005268 268 IGNAVVDMYAKLGIINSACAVFEG-LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSH 345 (705)
Q Consensus 268 ~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~ 345 (705)
.+-.+...|+.-+++|....+... ...+ +...-|.-....|++..|...|+.+.+ ..|+ ..+++.++.....
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhc
Confidence 344455577777777766665542 2222 233445556677888899999988876 5565 6677777777667
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH-HH-HHHhc--CChHHHHH
Q 005268 346 VGALRQGIKIHARVIKNCLCFDVFVAT-CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI-IS-CHGIH--GQGDKALN 420 (705)
Q Consensus 346 ~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~--g~~~~A~~ 420 (705)
.+.++...-..+..... ..+....++ .=+.+--+.++++....... ..+...|.+. +. ...+. .+.-.-.+
T Consensus 1496 ~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~ 1571 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLD 1571 (2382)
T ss_pred ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHH
Confidence 77776665544433322 222222222 22333356666766666554 5566667665 22 22221 22222223
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH----------HhHHhhCCcCCcc------hHHHHHHHHHhcC
Q 005268 421 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH----------MMQEEFGIKPHLK------HYGCMVDLFGRAG 484 (705)
Q Consensus 421 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~m~~~~~~~p~~~------~~~~li~~~~~~g 484 (705)
..+.+++.-+.| +.+|+..|.+..+.++.- ......++.++.. -|..-...-....
T Consensus 1572 ~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~ 1643 (2382)
T KOG0890|consen 1572 LIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSF 1643 (2382)
T ss_pred HHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhH
Confidence 444444322222 223333332222222111 1111123444322 1222221111111
Q ss_pred CHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchH
Q 005268 485 HLGMAHNFIQNM----PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 555 (705)
Q Consensus 485 ~~~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 555 (705)
+..+-+--+++. ..+| -..+|-.....++..|.++.|....-++.+..+ +..+.-.+......|+-..|
T Consensus 1644 ~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1644 RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHH
Confidence 222222112211 1122 255899999999999999999998887777663 46788889999999999999
Q ss_pred HHHHHHHHhCC
Q 005268 556 DEVRSLARDRG 566 (705)
Q Consensus 556 ~~~~~~m~~~~ 566 (705)
..+.+.-.+..
T Consensus 1722 l~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1722 LSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhh
Confidence 99998887654
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.78 E-value=2.9 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=16.1
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHH
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSAC 286 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~ 286 (705)
|.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556666677777777777666664
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.52 E-value=3.3 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
.|..+...+...|+++.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666777777777777777777777664
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.29 E-value=39 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCc-chHHHHHHHHHhc
Q 005268 378 YGKCGRIDDAMSLFYQVPRSSS-VPWNAIISCHGIH 412 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~ 412 (705)
+.+.|++++|..+|+++..... .+|..-+.++|..
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4566777777777777775443 3455555554443
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.98 E-value=6.7 Score=27.23 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=35.2
Q ss_pred hhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCc
Q 005268 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGY 614 (705)
Q Consensus 540 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 614 (705)
..++-++.+.|++++|.+..+.+.+. .|...+.......+.++|++.|.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 45677889999999999999998875 45555655555667777777763
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.64 E-value=6.1 Score=36.33 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 520 (705)
|-..|.+.-|+-=|.... .+.|+ +.+||.|.--+...|+++.|.+.|+.. +..|. ..+...=.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 444555555554444333 34443 245555555555555555555555544 33332 1111111122333455555
Q ss_pred HHHHHHHHhccCCCCc
Q 005268 521 GAVASDRLFEVDSENV 536 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~ 536 (705)
|.+-+.+..+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 5555555555555554
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.44 E-value=89 Score=33.07 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 376 (705)
-...-+++..+.++..+.-...+-.+|.. +.-+...|..++..|... ..+.--.+++++.+..+ .|++....|++
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 34456677888888888888888888887 445667777888888776 55667778888888754 36666677888
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-----Ccc----hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc
Q 005268 377 MYGKCGRIDDAMSLFYQVPRS-----SSV----PWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSH 446 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~ 446 (705)
.|-+ ++.+.+...|.++..+ ... .|.-++.-- ..+.+..+.+..+.... |..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 8877 7788888877765411 111 144444311 23445555555554432 222223444444455666
Q ss_pred cCcHHHHHHHHHHhHH
Q 005268 447 SGLVSEGQRYFHMMQE 462 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~ 462 (705)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6666666666665553
No 322
>PRK10941 hypothetical protein; Provisional
Probab=79.24 E-value=5.1 Score=39.09 Aligned_cols=62 Identities=23% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35677788999999999999999999999999988888899999999999999988887765
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.14 E-value=15 Score=29.33 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+-| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666677777899999999999999999999999999998876543 33337777664
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.08 E-value=1.3 Score=38.62 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=60.2
Q ss_pred HhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChh
Q 005268 133 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI 212 (705)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 212 (705)
..++..+.+.+.+.....+++.+++.+...+....+.|+..|++.++.++..++++.... .-...++..+-+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345666667777777778888888777667788889999999999887888877773332 33345666677777777
Q ss_pred hHHHHHHHH
Q 005268 213 TAHGFFTTM 221 (705)
Q Consensus 213 ~A~~~~~~m 221 (705)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777776665
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.00 E-value=15 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
.-++.+-++.+....+-|++....+.|.||.+.+++.-|.++|+..+.+-| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999988875423 24446666554
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.00 E-value=2.9 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=17.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566667777777777777766664
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.46 E-value=1.2e+02 Score=34.00 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=41.9
Q ss_pred HHHHHHHHHH-cCCChhHHHHHhccCC---CCCcc------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChh
Q 005268 65 VAASLLHMYC-RFGLANVARKLFDDMP---VRDSG------SWNAMISGYCQSGNAVEALDILDEMRLEGVS----MDPI 130 (705)
Q Consensus 65 ~~~~ll~~y~-~~g~~~~A~~~f~~~~---~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~ 130 (705)
+.-.+...|. ...+++.|+..+++.. +++.. +-..++..+.+.+... |....++..+.--. +-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555554 4556777777666542 11111 1223445555555444 66666665542111 1111
Q ss_pred hHHhH-HHHhhcCCChHHHHHHHHHHHH
Q 005268 131 TVASI-LPVCARSDNILSGLLIHLYIVK 157 (705)
Q Consensus 131 t~~~l-l~~~~~~~~~~~a~~~~~~~~~ 157 (705)
.|..+ +..+...++...|.+.++.+..
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22222 1111122566666666665554
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=25 Score=37.63 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHH
Q 005268 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 355 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 355 (705)
..+.|+++.|.++..+ ..+..-|..|..+..+.|++..|.+.|..... |.+|+-.+...|+-+....+
T Consensus 647 al~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHH
Confidence 3456777777776554 33566788888888888888888888877665 44566666666766655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 005268 356 HARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 392 (705)
Q Consensus 356 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 392 (705)
-....+.|.. |...-+|...|+++++.+++.
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 4555554421 222233555666666666653
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.11 E-value=4.3 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.94 E-value=20 Score=37.20 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=74.7
Q ss_pred HhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHH
Q 005268 410 GIHGQGDKALN-FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488 (705)
Q Consensus 410 ~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 488 (705)
...|+...|-+ ++.-+....-.|+.+...+.+ ..+.|.++.+.+.+..... -+.....+..+++.-..+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34567666554 444444433455555444443 5678888888887766543 234455677777777778888888
Q ss_pred HHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 489 AHNFIQNMP---VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 489 A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
|...-..|- ++ +..+...-.......|-++++...+++++.++|..
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 888777662 22 33333333344456677788888888888877653
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.89 E-value=7.6 Score=37.85 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCC-CCc-----chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 005268 58 GFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV-RDS-----GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT 131 (705)
Q Consensus 58 g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 131 (705)
|......+...++..-....+++++...+-++.. |+. .+-.+.++.+ -.-++++++.++..=++-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4444555566666666666777777776655542 211 1111222222 23367788888877778888888888
Q ss_pred HHhHHHHhhcCCChHHHHHHHHHHHHhC
Q 005268 132 VASILPVCARSDNILSGLLIHLYIVKHG 159 (705)
Q Consensus 132 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 159 (705)
+..+++.+.+.++..+|.++...|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888887777776653
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.57 E-value=1.3e+02 Score=33.59 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc
Q 005268 64 FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141 (705)
Q Consensus 64 ~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (705)
.++...|+-|.-.|++++|-.+.-.|-..+..-|.--+..++..++......+ ++....+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 35556666666667777777766666666666676666666666655443322 2222122344556666666544
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.19 E-value=6.8 Score=38.54 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=60.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcC
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 484 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 484 (705)
..-|.++|.+++|+..|...+. +.| |.+++..-..||.+...+..|..=....... | ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 4579999999999999999888 677 8999999999999998888777655444321 1 22355566554
Q ss_pred -------CHHHHHHHHHhC-CCCCCHH
Q 005268 485 -------HLGMAHNFIQNM-PVRPDAS 503 (705)
Q Consensus 485 -------~~~~A~~~~~~~-~~~p~~~ 503 (705)
.+.||.+-++.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 555554444433 3567633
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.15 E-value=16 Score=28.91 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHH-HhCCCCchhHHHHHH
Q 005268 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIV-KHGLEFNLFVSNNLI 171 (705)
Q Consensus 110 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li 171 (705)
.-++.+-++.+....+.|++....+.|++|.+.+++..|.++++-+. +.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33555666666666788888888888888888888888888888765 3332 333454444
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.78 E-value=3.9 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
|..+...|.+.|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666667777777777766665
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.31 E-value=75 Score=30.00 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCCHHHHHH---HH-HH-HHh-cCChhHHHHHHHHHhccCCCCcc
Q 005268 480 FGRAGHLGMAHNFIQNMP---VRPDASIWGA---LL-GA-CRI-HGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll-~~-~~~-~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
-+..|++.+|+++|++.. ...+..-|.. ++ .+ |.- ..|.-.+...+++-.+++|.-..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 356677888888877652 2223333321 11 12 222 25666788888999999996433
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.00 E-value=9.4 Score=34.97 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchhhhhhhhhhhcCCcch
Q 005268 481 GRAGHLGMAHNFIQNMPVRP--DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEG 554 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 554 (705)
.|.|+ ++|...|-.+.-.| +....-.-+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45565555553222 3333444455566677888888888888876422 56778888888888888877
Q ss_pred HH
Q 005268 555 VD 556 (705)
Q Consensus 555 a~ 556 (705)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.24 E-value=6.1 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 355566666666666666666666554
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.06 E-value=23 Score=36.68 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=75.1
Q ss_pred hcCCHHHHH-HHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005268 380 KCGRIDDAM-SLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456 (705)
Q Consensus 380 k~g~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 456 (705)
..|++-.|- ++|..+. +.+++........+...|+++.+++.+...... +.....+...++...-..|++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 456666553 3444433 222222222223455678888888888766553 445567788888888888888888888
Q ss_pred HHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 005268 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGA 511 (705)
Q Consensus 457 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 511 (705)
-..|... .++ +.++...-...--..|-++++...+++. .+ .|...-|-..++.
T Consensus 380 a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 380 AEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 8777643 332 2222222222223456778888777776 22 3445556556554
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.95 E-value=70 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 005268 415 GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 448 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 448 (705)
+++|+.-|++.+. +.|+. .++..+..++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 3567777777777 77886 57777777776543
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.94 E-value=76 Score=29.04 Aligned_cols=114 Identities=8% Similarity=0.053 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHH-----HHHHHHhcCCHHHH
Q 005268 417 KALNFFRQMLDEGVRPDHITFVS--LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC-----MVDLFGRAGHLGMA 489 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 489 (705)
+.....+++....-....-++.. +...+...+++++|..-++.... .|..+.+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555556655321222222222 33456777888888877765542 222233333 34566778888899
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 490 HNFIQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 490 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
+..++... .++ ...-..-...+...|+-++|+..|++.++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 88887753 121 1112223457788888888999998888877533
No 342
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.86 E-value=6.2 Score=40.91 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 480 FGRAGHLGMAHNFIQNM-PVRPDASIWGALL-GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
+...+.++.|..++.++ ..+||-..|-+.= .++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 33455666666666665 4566644443332 667778888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 005268 558 VRSLARD 564 (705)
Q Consensus 558 ~~~~m~~ 564 (705)
.++.-..
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 7776543
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.29 E-value=7 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005268 474 GCMVDLFGRAGHLGMAHNFIQ 494 (705)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~ 494 (705)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 344
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.25 E-value=52 Score=26.70 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||..+|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34566666666665543 222333333445667888888855555666788888877754 467778888888887776
Q ss_pred cCCCCCHHHHH
Q 005268 428 EGVRPDHITFV 438 (705)
Q Consensus 428 ~g~~p~~~t~~ 438 (705)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.90 E-value=49 Score=26.44 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 246 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
-++|..|-+.+...+ .....+.-.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|..
T Consensus 21 HqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 344555555554443 11333333344556788999999999999999999999877654 56777777666666665
No 346
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.85 E-value=38 Score=32.06 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCCHHHHHHH-----------HHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 478 DLFGRAGHLGMAHNFIQNM---------PVRPDASIWGAL-----------LGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~l-----------l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
+-+.+.|++.||..-++++ +.+|...-|--| -..+...|++-++++.-..++..+|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4455667777776655443 345655555322 23344678888899999999999999999
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+|..-+.+.+..=+..+|..-+....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9998888777776777777777776654
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.69 E-value=31 Score=31.69 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC--cCCcchHHHHHHHHHhcCCHHHH
Q 005268 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A 489 (705)
++|.+.|-++...+.--++.....|. .|....+.++++.++....+.+.- .+|++.+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555544332222222222 233344555555555544432211 23444455555555555544444
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.91 E-value=28 Score=27.87 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 112 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171 (705)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 171 (705)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 455556666666778888888888888888888888888888765432 22222555544
No 349
>PRK12798 chemotaxis protein; Reviewed
Probab=69.89 E-value=1.4e+02 Score=30.91 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHhhCCC----CCcchHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCcHH
Q 005268 381 CGRIDDAMSLFYQVPR----SSSVPWNAIISCHGI-HGQGDKALNFFRQMLDEGVRPDHI----TFVSLLTACSHSGLVS 451 (705)
Q Consensus 381 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 451 (705)
.|+.++|.+.+..+.. +....+-+|+.+-.. ..++.+|+.+|++..- ..|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999988873 344447777766544 5689999999999887 566543 3444445667899999
Q ss_pred HHHHHHHHhHHhhCCcCCcchH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 005268 452 EGQRYFHMMQEEFGIKPHLKHY-GCMVDLFGRAG---HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 527 (705)
Q Consensus 452 ~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 527 (705)
++..+-......|...|-...| .-++..+.+.+ ..+.-..++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888887777776666643333 22333343333 4444556666664222355888888888999999999999999
Q ss_pred HhccCCCCcchhhhhhhhhhh-----cCCcchHHHHHHH
Q 005268 528 LFEVDSENVGYYVLMSNIYAN-----VGKWEGVDEVRSL 561 (705)
Q Consensus 528 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~ 561 (705)
+..+... ...-...+.+|.. ..+.+++.+-++.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 9988643 2333334444433 2335555554443
No 350
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=69.20 E-value=1.2e+02 Score=29.87 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHH---HHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005268 370 VATCLVDMYGKCGRIDD---AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~---A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 428 (705)
+...++.+|...+..+. |..+++.+. ...+..+---+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44556666666555443 333333332 111222333344444456666666666666664
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.19 E-value=9.3 Score=34.23 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC----cchHHHHHHHHH
Q 005268 518 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGK----WEGVDEVRSLAR 563 (705)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 563 (705)
+++|+.-+++++.++|+...++..++++|...|. -.+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5677888888899999999999999999988765 234445555443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.89 E-value=12 Score=34.50 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
...-+..+.+.+.+++|+...+.- +.+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566788889999998877544 4455 456677888999999999999999999889998654
No 353
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.76 E-value=86 Score=29.81 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 515 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 515 (705)
++.++...|+.+.|..+++.+. ..-.+......+... ..+|.+.||..+.+..+.+-....|..++..|...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 4455555666666666665432 111111222222333 44567777777776654221234566666655543
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.15 E-value=54 Score=28.45 Aligned_cols=88 Identities=8% Similarity=0.207 Sum_probs=56.9
Q ss_pred HHhCCCCCH--HHHHHHHHHHHcCCChhHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-hhHHHHHHHHHHH
Q 005268 55 LKLGFEWDV--FVAASLLHMYCRFGLANVARKLFDDMP---------VRDSGSWNAMISGYCQSGN-AVEALDILDEMRL 122 (705)
Q Consensus 55 ~~~g~~~~~--~~~~~ll~~y~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 122 (705)
.+.+..++. ...|+++.-....+++.....+++.+. ..+..+|++++.+.++... ---+..+|.-|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 345666666566666666666555553 2355678888888866655 3456777888887
Q ss_pred CCCCCChhhHHhHHHHhhcC
Q 005268 123 EGVSMDPITVASILPVCARS 142 (705)
Q Consensus 123 ~g~~p~~~t~~~ll~~~~~~ 142 (705)
.+.+++..-|..++.+|.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 77788888888888877654
No 355
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=1.6e+02 Score=30.18 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=116.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH--HHHHHcCCCCCHHHHHHHHH
Q 005268 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF--RQMLDEGVRPDHITFVSLLT 442 (705)
Q Consensus 365 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll~ 442 (705)
..+..+...+++.+...++|+.--+.. ....-++|+...|+... +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 345556666777777777776543322 12234567777776532 22222223566666555554
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HH
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL------------LG 510 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l~ 510 (705)
.+.. +.++.- |-+.. ....-..|...+-.+|++++|.+++.+.+.+ ||+++ +.
T Consensus 115 tLr~---VtegkI-yvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRT---VTEGKI-YVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHH---hhcCce-EEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 4321 111110 00000 0112334667788999999999999887532 33332 35
Q ss_pred HHHhcCChhHHHHHHHHHhccC---CC----CcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEE
Q 005268 511 ACRIHGNMELGAVASDRLFEVD---SE----NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 583 (705)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~ 583 (705)
.|...+|+-.|.-+.+++...- |+ ....|..+..+..+.+.+=++.+.++..-+.|-.+...--|+++-..+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 6788889988888877765432 32 1245788999999999999999999998887766665556777665554
Q ss_pred EEEe
Q 005268 584 IFYT 587 (705)
Q Consensus 584 ~~~~ 587 (705)
.|..
T Consensus 260 ~f~~ 263 (439)
T KOG1498|consen 260 SFCV 263 (439)
T ss_pred eEEe
Confidence 5543
No 356
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=66.19 E-value=61 Score=34.71 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 372 TCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPW---NAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 372 ~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
..|+.-|.+.+++++|..++..|. ......| +.+.+.+.+..-.++....++.++..-..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 356778999999999999998886 2222223 3334444444445555556666655433343
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.57 E-value=2.1e+02 Score=31.14 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhccCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHh
Q 005268 63 VFVAASLLHMYCRFGLANVARKLFDDMPV--RDSG-SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139 (705)
Q Consensus 63 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 139 (705)
...++.||.---...+++.++.+++.+.. |... -|-....-=.+-|..+.+.++|++-+. |++.....|...+.-+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 34455555444444445666666666552 3322 244444444566778888888888775 3554555555555444
Q ss_pred -hcCCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHccCCHHHHHHHHhccCCC
Q 005268 140 -ARSDNILSGLLIHLYIVKH-GLE-FNLFVSNNLINMYAKFGMMRHALRVFDQMMER 193 (705)
Q Consensus 140 -~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 193 (705)
...|+.+..+..|+.++.. |.. .....|-..|..-..++++.....+++++.+-
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3556777777777777653 321 23445666666667777888888888877653
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.27 E-value=4.8 Score=39.76 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 482 RAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
..|.+++|++.|... +..|. ...+..=.+++.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345677777776655 33433 3344444556667777777888888888888877777776666677778888888888
Q ss_pred HHHHhCCCccC
Q 005268 560 SLARDRGLKKT 570 (705)
Q Consensus 560 ~~m~~~~~~~~ 570 (705)
....+.+....
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 87777665443
No 359
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.18 E-value=78 Score=27.49 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccC---------CCCeehHHHHHHHHHcCCC-hhhHHHHHHHHHHCCCCCChhhHHHH
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMM---------ERDVVSWNSIIAAYEQSND-PITAHGFFTTMQQAGIQPDLLTLVSL 236 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 236 (705)
.|.++.-.+..+.+.-...+++.+. ..+-.+|..+..+..+... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555455555555554444442 1356688899988866665 45678889999888899999999999
Q ss_pred HHHHHcc
Q 005268 237 TSIVAQL 243 (705)
Q Consensus 237 l~a~~~~ 243 (705)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9988765
No 360
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.18 E-value=3e+02 Score=32.60 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=24.4
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 308 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 308 (705)
.+|+.+...-+..+.+.+..+....+...+..+|...-...+.++.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666777766665443344444444444444334444443
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.90 E-value=2.1e+02 Score=30.56 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=74.9
Q ss_pred CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHH
Q 005268 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISC 408 (705)
Q Consensus 332 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 408 (705)
|...+.+++..+...-...-...+..+++..| -+...+-.++..|... ..+.-..+++++. -.|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55555566666666555555555666665544 2444555556666555 3344444555333 2233333333333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhc
Q 005268 409 HGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483 (705)
Q Consensus 409 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 483 (705)
|.+ ++...+...|.+....-++--+ ..|.-+... -..+.+.-.++...+.+..|...-...+.-+-.-|.-.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 333 5555566666655554221111 122222210 13344455555555544444444444444444555555
Q ss_pred CCHHHHHHHHHhC
Q 005268 484 GHLGMAHNFIQNM 496 (705)
Q Consensus 484 g~~~~A~~~~~~~ 496 (705)
.++.+|++++..+
T Consensus 219 eN~~eai~Ilk~i 231 (711)
T COG1747 219 ENWTEAIRILKHI 231 (711)
T ss_pred cCHHHHHHHHHHH
Confidence 5666666655544
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.99 E-value=31 Score=31.52 Aligned_cols=20 Identities=30% Similarity=0.175 Sum_probs=15.3
Q ss_pred HHHHcCChhHHHHHHHhhhh
Q 005268 306 GYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~ 325 (705)
-+..+|++++|..-|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE 123 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH
Confidence 35677888888888888776
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.89 E-value=82 Score=25.61 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 005268 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323 (705)
Q Consensus 244 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (705)
...++|..|.+.+...+ .....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...|.++
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 34667777777777766 2344444455566778899999966656666788888877654 4778888888888877
Q ss_pred hh
Q 005268 324 EE 325 (705)
Q Consensus 324 ~~ 325 (705)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 65
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.70 E-value=19 Score=23.90 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEG 429 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g 429 (705)
+..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777777543
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.20 E-value=1.1e+02 Score=31.69 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=34.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACS--HSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 462 (705)
...+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3667888888888888886 566554 3344444443 35567788888877654
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.56 E-value=1.8e+02 Score=28.54 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 363 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 363 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
+-.++..+...++..+++.+++.+-.++++... ..|..+|..+|......|+..-...+.
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 345667777788888888888888888887654 567888999999999999876444443
No 367
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=20 Score=40.15 Aligned_cols=119 Identities=16% Similarity=0.269 Sum_probs=75.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHH
Q 005268 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 491 (705)
+.++++.+.+.+...--| .++|.-+-+.|-.+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666655444332211 12343445666666666655432222 233457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 492 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 492 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
.-.+.. |..+|.-|+..-..+||.+.|+..|++... +..|+-+|.-.|+.++-.++-+.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 887764 778899999999999999999999887644 334555666677766555444443
No 368
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.20 E-value=2.3e+02 Score=29.89 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.2
Q ss_pred hHHHHHHHHHc---CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005268 197 SWNSIIAAYEQ---SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240 (705)
Q Consensus 197 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 240 (705)
....+++++.+ ..+++.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555 478999999999999998887755444444443
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.90 E-value=3.7e+02 Score=31.88 Aligned_cols=255 Identities=10% Similarity=-0.009 Sum_probs=135.5
Q ss_pred HHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCC
Q 005268 184 LRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 263 (705)
Q Consensus 184 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 263 (705)
..+...+..+|...-..-+..+.+.+.. ++...+....+ .+|...-...+.++...+........+....+ .
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~ 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----S 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----C
Confidence 3455555567766666666666666653 34444444443 23433334444444444221111122222221 3
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHh
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 343 (705)
+|..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. + .... -.++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l-~~~l----~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---V-AGAA----TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---H-HHHh----cCCCHHHHHHHHHHH
Confidence 4556666666666554321 12334455566676666666666666554332 1 1222 223444444555555
Q ss_pred hccCchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH-HHhhCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 005268 344 SHVGALRQ-GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS-LFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 421 (705)
Q Consensus 344 ~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 421 (705)
...+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+.. +...+..++...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 55554332 2233333333 3567788888888888887655533 3444445555455556666666664 467777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 422 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 422 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
+..+++ .|+...=...+.++.+...-..+...+....+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 777775 56766666667777765434556666665554
No 370
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.90 E-value=2e+02 Score=28.87 Aligned_cols=89 Identities=16% Similarity=-0.006 Sum_probs=59.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCC---cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGI---KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 519 (705)
+|...+-.+++.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+
T Consensus 139 a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 139 ACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp HHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HH
T ss_pred hccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHH
Confidence 342334477888888888763111 33555667777777888887766666666655567788889999999899988
Q ss_pred HHHHHHHHHhcc
Q 005268 520 LGAVASDRLFEV 531 (705)
Q Consensus 520 ~a~~~~~~~~~~ 531 (705)
.-.++++.++.-
T Consensus 219 ~~~~~l~~~l~~ 230 (324)
T PF11838_consen 219 LLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHcCC
Confidence 888888888884
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.64 E-value=85 Score=32.35 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=48.3
Q ss_pred CHHHHHHHH---HHHHhcCChhHHHHHHHHHhccCCC-Ccchhhhhhhhhh-hcCCcchHHHHHHHHHh
Q 005268 501 DASIWGALL---GACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYA-NVGKWEGVDEVRSLARD 564 (705)
Q Consensus 501 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 564 (705)
|...|.++. ....+.|-+.-|.+..+-++.++|. ||-.....++.|+ ++++++--..+.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445555553 5677899999999999999999998 8877777888775 56677666677666544
No 372
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.52 E-value=1.7e+02 Score=27.78 Aligned_cols=11 Identities=0% Similarity=-0.179 Sum_probs=5.0
Q ss_pred CChHHHHHHHH
Q 005268 143 DNILSGLLIHL 153 (705)
Q Consensus 143 ~~~~~a~~~~~ 153 (705)
+.+++|..++.
T Consensus 28 ~k~eeAadl~~ 38 (288)
T KOG1586|consen 28 NKYEEAAELYE 38 (288)
T ss_pred cchHHHHHHHH
Confidence 34444444443
No 373
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.41 E-value=1.8e+02 Score=30.55 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCC
Q 005268 217 FFTTMQQAGIQPD 229 (705)
Q Consensus 217 ~~~~m~~~g~~p~ 229 (705)
+.+.+.+.|..|+
T Consensus 183 iv~~Ll~~ga~~n 195 (413)
T PHA02875 183 ICKMLLDSGANID 195 (413)
T ss_pred HHHHHHhCCCCCC
Confidence 3344445555554
No 374
>PRK09169 hypothetical protein; Validated
Probab=57.57 E-value=5.4e+02 Score=33.36 Aligned_cols=434 Identities=9% Similarity=-0.008 Sum_probs=229.2
Q ss_pred CChhhHHhHHHHhhcCCChHHHHHHHHHHHH---hC----CCCchhHHHHHHHHHHccCCHHHHHHHHhccCC-------
Q 005268 127 MDPITVASILPVCARSDNILSGLLIHLYIVK---HG----LEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------- 192 (705)
Q Consensus 127 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------- 192 (705)
.|...+..+|+++++=.+-......-..+.. .. ...+..-...++++++|.-+.......-..+-.
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 4566777788888776655444333332211 10 123444556667777777665554444333311
Q ss_pred ----CCeehHHHHHHHHHcCCChhhHHHHHHHH----HH---CCCCCChhhHHHHHHHHHccCChhhHHHHHHH----HH
Q 005268 193 ----RDVVSWNSIIAAYEQSNDPITAHGFFTTM----QQ---AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF----IM 257 (705)
Q Consensus 193 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~---~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~----~~ 257 (705)
-+......++++++|-.+-+.+...-..+ .. .....|..-+...++++++-..-+.++..-.. +.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 13344566778888876655443332222 11 11234566677888888887665543332222 21
Q ss_pred HhcC--CCchhHHHHHHHHHHHhcCCHHHHH----HHHhcCC-------CCChhHHHHHHHHHHHcCChhH----HHHHH
Q 005268 258 RRGW--FMEDVIIGNAVVDMYAKLGIINSAC----AVFEGLP-------VKDVISWNTLITGYAQNGLASE----AIEVF 320 (705)
Q Consensus 258 ~~g~--~~~~~~~~~~li~~y~~~g~~~~A~----~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~ 320 (705)
.... ...+..-....+++++|..+-+.+. .+-+.+. .-|..-....+.++++-++-+. |..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1100 2334555566778888877766432 2222221 1255556667788887765432 33444
Q ss_pred HhhhhcCCC--CCCcccccchhHHhhccCchHHHHHHHHHHH----Hh---CCCCchhHHHHHHHHHHhcCCHHH----H
Q 005268 321 QMMEECNEI--NPNQGTYVSILPAYSHVGALRQGIKIHARVI----KN---CLCFDVFVATCLVDMYGKCGRIDD----A 387 (705)
Q Consensus 321 ~~m~~~~~~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~---g~~~~~~~~~~li~~y~k~g~~~~----A 387 (705)
..+....+. .-|..-....+.+|++.+.-+...+....+. .. .-..+..-....+.+++|.++-+. +
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 444331222 2355667788999998876554433322221 11 012345666677788888776442 2
Q ss_pred HHHHhhCC-------CCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHH
Q 005268 388 MSLFYQVP-------RSSSVPWNAIISCHGIHGQGDKALN----FFRQMLDE---GVRPDHITFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 388 ~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a 453 (705)
..+...+. .-+..-....+.++++-++.+.+.. +..++... --.-|..-+...++++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 33333332 1233447778888888887665433 33333221 1233566678889999987764332
Q ss_pred H----HHHHHhHHhhC--CcCCcchHHHHHHHHHhcCCHH----HHHHHHHhCC------CCCCHHHHHHHHHHHHhcCC
Q 005268 454 Q----RYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLG----MAHNFIQNMP------VRPDASIWGALLGACRIHGN 517 (705)
Q Consensus 454 ~----~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~~~------~~p~~~~~~~ll~~~~~~g~ 517 (705)
. .+...+.++-+ -..+.......+.++++-+.-. -|..+..... ..-|..-+.++++++.+-.+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 2 23333322111 1224567788889999877532 2333333331 22367778899999999888
Q ss_pred hhHHHHHHHHHhc---cCCC-----CcchhhhhhhhhhhcCCcchHHHHHH
Q 005268 518 MELGAVASDRLFE---VDSE-----NVGYYVLMSNIYANVGKWEGVDEVRS 560 (705)
Q Consensus 518 ~~~a~~~~~~~~~---~~p~-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 560 (705)
.+....+...+-. .+|. ++.....+.|++++-.+.+.+.+...
T Consensus 640 ~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~ 690 (2316)
T PRK09169 640 EDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAAL 690 (2316)
T ss_pred chhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 7765544443322 1221 23334455566666655444433333
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.38 E-value=42 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
|..|+.-|..+|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666777766666655
No 376
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=22 Score=33.40 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=46.7
Q ss_pred HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 486 LGMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 486 ~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
++.|..-+.+. .+.|+. .-|..=+-.+.+..+++.+..--.+++++.|+.......++........+++|..++....
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34444433332 345554 3334444445556666666666667777777666666677777777777777777766664
Q ss_pred h
Q 005268 564 D 564 (705)
Q Consensus 564 ~ 564 (705)
+
T Consensus 106 s 106 (284)
T KOG4642|consen 106 S 106 (284)
T ss_pred H
Confidence 3
No 377
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.04 E-value=30 Score=32.56 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCChh-------HHHHHHHHHhccC--CC----CcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 502 ASIWGALLGACRIHGNME-------LGAVASDRLFEVD--SE----NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
..++--+.+.|+..|+-+ .|...|+++++.+ |. ......+++.++.+.|+.++|.+.+..+...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334555667777777744 4555566665544 22 23455678999999999999999999988654
No 378
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.72 E-value=2.2e+02 Score=31.54 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHH----H-HHhcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhcC--
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVD----M-YGKCGRIDDAMSLFYQVPR--------SSSVPWNAIISCHGIHG-- 413 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~----~-y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-- 413 (705)
...+.+.++...+.|. ......+.. . ++...+++.|...|+.+.+ -.....+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4566777777766652 222222222 2 3345566666666655432 12333444555554432
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhH
Q 005268 414 ---QGDKALNFFRQMLDEGVRPDHITFVSLLTACSH-SGLVSEGQRYFHMMQ 461 (705)
Q Consensus 414 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~ 461 (705)
+.+.|+.+|.+.-+.| .|+...+...+.-... ..+...|.++|....
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 3344555555555554 3444333333222211 123445555554444
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.18 E-value=23 Score=22.22 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHhccCCC
Q 005268 505 WGALLGACRIHGNMELGAVA--SDRLFEVDSE 534 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 534 (705)
|-++.-.+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45566667777888888888 4466666654
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.88 E-value=37 Score=25.78 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=21.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 005268 412 HGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRY 456 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 456 (705)
.++.++|+..|...++.-..|.. .++..++.+++..|++++.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555553222221 2444555555555555555543
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.04 E-value=3.6e+02 Score=30.48 Aligned_cols=403 Identities=11% Similarity=0.013 Sum_probs=194.6
Q ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005268 47 GKKIHCSVLKLGF-EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125 (705)
Q Consensus 47 ~~~~~~~~~~~g~-~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (705)
..++-..+.+..- +.....-..-+..+++.+++....+ |..-+..+...-.....+....|+.++|......+-..|
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g- 159 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG- 159 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 4455555555432 3334445555666778888888888 443334455556677788888999888888888877665
Q ss_pred CCChhhHHhHHHHhhcCCChHHH--HHHHHHHHHhCC-----------CCc-hhHHHHHHHHHHccCCHHHHHHHHhccC
Q 005268 126 SMDPITVASILPVCARSDNILSG--LLIHLYIVKHGL-----------EFN-LFVSNNLINMYAKFGMMRHALRVFDQMM 191 (705)
Q Consensus 126 ~p~~~t~~~ll~~~~~~~~~~~a--~~~~~~~~~~g~-----------~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 191 (705)
.........++..+.+.|.+... .+=+..+...|. .++ ......++..+.+ ...+...+...+
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~ 236 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG 236 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC
Confidence 33456667777777655543322 111222222221 111 1112222232222 222222222221
Q ss_pred CCCeehHHHHHHHHH--cCCChhhHHHHHHHHHHCC-CCCChhh--HHHHHHHHHccCChhhHHHHHHHHHHhcCCCchh
Q 005268 192 ERDVVSWNSIIAAYE--QSNDPITAHGFFTTMQQAG-IQPDLLT--LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 266 (705)
Q Consensus 192 ~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 266 (705)
++...-..++-++. ...+++.|..++....... ..++... ...+.......+....+...+...... ..+.
T Consensus 237 -~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~ 312 (644)
T PRK11619 237 -PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQST 312 (644)
T ss_pred -CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCc
Confidence 12111111222222 3456688888888764432 2222221 122221122221133444444333222 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHH-HHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHh
Q 005268 267 IIGNAVVDMYAKLGIINSACAVFEGLPVK--DVISW-NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343 (705)
Q Consensus 267 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 343 (705)
.+...-+..-.+.++++.+...|..|+.. +...| -=+..++...|+.++|...|+.... . .+|-.++.+-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~------~~fYG~LAa~ 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-Q------RGFYPMVAAQ 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-C------CCcHHHHHHH
Confidence 44445555566888999999999988642 22122 2244555668999999999988743 1 2343333221
Q ss_pred hccCchHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCChHHHHHH
Q 005268 344 SHVGALRQG-IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SSSVPWNAIISCHGIHGQGDKALNF 421 (705)
Q Consensus 344 ~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 421 (705)
++|..-.. ...... ....+..+. .-.-+..+...|....|...+..+.. .+....-.+...-.+.|.++.++..
T Consensus 386 -~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 386 -RLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred -HcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111000 000000 000000011 11223445567888888877766553 3333344444444567777777766
Q ss_pred HHHHHHcC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcch
Q 005268 422 FRQMLDEG----VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 472 (705)
Q Consensus 422 ~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 472 (705)
.......+ --|- .|...+..++..-.++.++- +.-+.++.++.|+..+
T Consensus 462 ~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a~S 513 (644)
T PRK11619 462 TIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKARS 513 (644)
T ss_pred HhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCCcc
Confidence 54332210 0121 35556666665555665553 2334444578887543
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.91 E-value=1.3e+02 Score=29.37 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH--
Q 005268 406 ISCHGIHGQGDKALNFFRQMLD--EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG-- 481 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 481 (705)
|.+++..|++.+++...-+--+ +.++|...-... -.|++.+....+.++-..-.+. .-.-+..-|.+++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5677777777777765544433 124444433333 3478888888887777666543 22223345777777664
Q ss_pred ---hcCCHHHHHHHHHhC
Q 005268 482 ---RAGHLGMAHNFIQNM 496 (705)
Q Consensus 482 ---~~g~~~~A~~~~~~~ 496 (705)
=.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 458999999988544
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.46 E-value=14 Score=29.17 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 523 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666655555543
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.81 E-value=29 Score=37.05 Aligned_cols=95 Identities=9% Similarity=-0.000 Sum_probs=55.2
Q ss_pred ccCcHHHHHHHHHHhHHhhCCcC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHH
Q 005268 446 HSGLVSEGQRYFHMMQEEFGIKP--HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a 521 (705)
..|+...|...+.... ...| .......|...+.+.|..-+|-.++.+. .+ ...+.++-++.+++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566666666655443 2333 1233444556666666666666655443 11 12344556667777777777777
Q ss_pred HHHHHHHhccCCCCcchhhhhh
Q 005268 522 AVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
++.++.+++++|+++..-..|.
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHH
Confidence 7777777777777766555443
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.81 E-value=24 Score=23.36 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 005268 100 MISGYCQSGNAVEALDILDEMRLE 123 (705)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~~ 123 (705)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666676666666643
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.77 E-value=32 Score=26.10 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=28.7
Q ss_pred ccCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHHHH
Q 005268 446 HSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 492 (705)
+....++|+..|....++..-.|+. .++.+|+.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776652222222 3566666777777777766554
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.49 E-value=1.9e+02 Score=27.97 Aligned_cols=177 Identities=13% Similarity=0.131 Sum_probs=98.9
Q ss_pred CCHHHHHHHHhhCCC----C---CcchHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCC--CHHHHHHHHHHHhccCc
Q 005268 382 GRIDDAMSLFYQVPR----S---SSVPWNAIISCHGIHGQGDKALNFFRQMLD---EGVRP--DHITFVSLLTACSHSGL 449 (705)
Q Consensus 382 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--~~~t~~~ll~a~~~~g~ 449 (705)
..+++|+.-|++..+ + +....-.+|..+.+.|++++.++.|.+|+. +.+.- +..+.++++.--+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665541 1 122234567777778888888888777764 11222 23466777766665555
Q ss_pred HHHHHHHHHHhHHhh----CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----C---CCC-------HHHHHHHHHH
Q 005268 450 VSEGQRYFHMMQEEF----GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP----V---RPD-------ASIWGALLGA 511 (705)
Q Consensus 450 ~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~---~p~-------~~~~~~ll~~ 511 (705)
.+--.++++.-.+.. +-...-.+-+-|...|...|.+..-..+++++. . +.| ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555555554333211 112222344566777777777666666665541 0 011 2244444566
Q ss_pred HHhcCChhHHHHHHHHHhccCCC--Ccchh----hhhhhhhhhcCCcchHHHH
Q 005268 512 CRIHGNMELGAVASDRLFEVDSE--NVGYY----VLMSNIYANVGKWEGVDEV 558 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~a~~~ 558 (705)
|..+.+-..-..+|++++.+..- .|-.. .+=+.+..+.|+|++|..-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 66677777777788888776522 22221 1234566778888888743
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.18 E-value=1.9e+02 Score=28.38 Aligned_cols=120 Identities=14% Similarity=0.220 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCChhhHHhHHHHhhcC--CChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRL-EGVSMDPITVASILPVCARS--DNILSGLLIHLYIVKH-GLEFNLFVSNNLIN 172 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~ 172 (705)
|..|+. ++....+|+++|+..-. ..+--|......+++..... ..+..--++.+.+... |-.++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666653 45566788888884322 33556888888888877652 2333334455555543 35677888888999
Q ss_pred HHHccCCHHHHHHHHhccC-----CCCeehHHHHHHHHHcCCChhhHHHHHH
Q 005268 173 MYAKFGMMRHALRVFDQMM-----ERDVVSWNSIIAAYEQSNDPITAHGFFT 219 (705)
Q Consensus 173 ~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 219 (705)
.+++.+++.+-.++++... ..|...|...|....+.|+..-...+..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 9999999999999987663 3588899999999999999875554443
No 389
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.47 E-value=2e+02 Score=27.35 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=45.7
Q ss_pred CHHHHHHHHhhCC--CCCcch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCcHHHHHHHHH
Q 005268 383 RIDDAMSLFYQVP--RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV-SLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 383 ~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~ 458 (705)
.++.|...+.+.. .|.+.+ |+.-+.++.+..+++.+..--.+.++ +.||.+--. .+..+......+++|+..+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3444444443333 344433 56666777777777777776666666 678776333 33445566677777777776
Q ss_pred Hh
Q 005268 459 MM 460 (705)
Q Consensus 459 ~m 460 (705)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 65
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.36 E-value=2.8e+02 Score=29.32 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=34.1
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005268 401 PWNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448 (705)
Q Consensus 401 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 448 (705)
....+++++.+ .++++.|+..+.+|++.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555666655 4789999999999999998888766555555554444
No 391
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.36 E-value=81 Score=31.23 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHI---TFVSLLTACSHSGLVSEGQRYFHMM 460 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 460 (705)
|..+-.+.|+..+|.+.|+++.+. .|-.. ....|+.+|....-+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555678888888888877763 33221 2334666666666565555555443
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.55 E-value=54 Score=30.20 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 499 RPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 499 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555555555555555555555555
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.04 E-value=30 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC---------cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 512 CRIHGNMELGAVASDRLFEVDSEN---------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+.||+..|.+.+.+.++..... ..+...++.++...|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346677777777777766543211 122345777888899999999988887653
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.30 E-value=19 Score=21.18 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 516 GNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
|+.+.+..+|++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567778888888877776666655444
No 395
>PRK10941 hypothetical protein; Provisional
Probab=47.75 E-value=67 Score=31.44 Aligned_cols=65 Identities=6% Similarity=-0.105 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
.+-..|.+.++++.|+...+.+ .+.|+ +.-|.--.-.|.+.|....|..-++..++..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455666777777777777666 33443 44566666667777878888887787777777776543
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.61 E-value=22 Score=30.15 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=25.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 444 (705)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677899999999999999986 55666543
No 397
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.22 E-value=93 Score=32.53 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 493 IQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 493 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
|...+++|. ..++++-++.+.+++|+.-|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444455654 3366777888899999999999999999999854
No 398
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.00 E-value=2.4e+02 Score=25.85 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=58.1
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC------
Q 005268 393 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI------ 466 (705)
Q Consensus 393 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~------ 466 (705)
+-.++-.++|-....+-++.-+.+++-+.|- ...=.+++-.|.+.-+|.+++++++.|.+. .+
T Consensus 101 d~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LK 169 (233)
T PF14669_consen 101 DSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLK 169 (233)
T ss_pred cccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcc
Confidence 3334555667666666665544444333221 112245666788888999999999888653 22
Q ss_pred --------cCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005268 467 --------KPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497 (705)
Q Consensus 467 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 497 (705)
.+.-...|.-...+.++|.+|.|..++++-.
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 1222445666677888888888888887653
No 399
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.10 E-value=1.5e+02 Score=23.19 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHH
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 419 (705)
..|+.+.|.+++..++ +....|...++++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777888888777 77777777777777777655443
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.66 E-value=53 Score=28.42 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCc
Q 005268 486 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552 (705)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (705)
-+.|.++.+-|. .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667777764 2222334455667899999999999999999999998888888877666543
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.57 E-value=67 Score=29.61 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=37.8
Q ss_pred hccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 445 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
....+.+......+.+.+.....|++..|..++..+...|+.++|.+..+++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555555554466788888888888888888888888888777
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.32 E-value=44 Score=32.87 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 441 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 441 (705)
||..|..-.+.||.++|+.++++..+.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 7888999999999999999999999999776666776544
No 403
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.78 E-value=36 Score=33.23 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 482 RAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
+.|+.++|..+|+.+ ...|+ +.+..-+....-.++++-+|-+.|-+++.+.|.|..+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 556666666666544 33443 233333444444556666677777777777776665543
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.24 E-value=37 Score=31.78 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=41.7
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 479 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
+..+.|+-+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567777777777766 3334 46677777777788888888888888888888776
No 405
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=41.89 E-value=17 Score=19.25 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=9.5
Q ss_pred cchhHHHHHHhh
Q 005268 666 GDCHNWTKFISQ 677 (705)
Q Consensus 666 ~~~h~~~~~~s~ 677 (705)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457999999884
No 406
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.65 E-value=1.8e+02 Score=30.61 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHH------hhCCcCCcchHHHH
Q 005268 417 KALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMMQE------EFGIKPHLKHYGCM 476 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p~~~~~~~l 476 (705)
++..+++-+...|+... .++|+. -|++.=-+++++..|+.+-+ ..|+..+.+.+.+|
T Consensus 152 DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 57778888888776544 345443 35555556666666653321 12555565555544
No 407
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.98 E-value=1.4e+02 Score=23.42 Aligned_cols=62 Identities=21% Similarity=0.111 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchhhhhhhhhhhcCCcc-hHHHHHHHH
Q 005268 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNIYANVGKWE-GVDEVRSLA 562 (705)
Q Consensus 501 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 562 (705)
|....-.+...+...|+++.|...+-.+++.+|+ +...-..|..++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4456666777788888888888888888777664 3455556666666666643 444555444
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.74 E-value=84 Score=21.22 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=20.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHhHHH
Q 005268 105 CQSGNAVEALDILDEMRLEGVSMDPITVASILP 137 (705)
Q Consensus 105 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 137 (705)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666555555543
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.60 E-value=2.4e+02 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=17.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCC
Q 005268 410 GIHGQGDKALNFFRQMLDEGVR 431 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~ 431 (705)
...|+++.|+++.+-+++.|.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCC
Confidence 4568899999999999988843
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.57 E-value=1.7e+02 Score=24.03 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=25.1
Q ss_pred ehHHHHHHHHHcCCChhhHHHHHHHHHH
Q 005268 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQ 223 (705)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 223 (705)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999876
No 411
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=6.6e+02 Score=29.34 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH-
Q 005268 96 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY- 174 (705)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y- 174 (705)
-|..|+.-|...|+.++|+++|.+.....-.-|.. ..+.-..+.+.+.+.+-+ +.. |+--|
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~-~~~----Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAE-NLD----LILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhccc-chh----HHHHHh
Confidence 38889999999999999999999887531000110 011112244444444422 211 12112
Q ss_pred --HccCCHHHHHHHHhccCCCCeehHH-HHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005268 175 --AKFGMMRHALRVFDQMMERDVVSWN-SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242 (705)
Q Consensus 175 --~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 242 (705)
.-..+.+...++|-.-......+.+ .-+-.|.....++-+...++.+....-.++..-.+.++..|..
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234555666666551110111111 1234566777788888888888776666666666666665543
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.04 E-value=1.7e+02 Score=22.92 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHH
Q 005268 47 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 114 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 114 (705)
..+++...++.|+- +..-.+.+-.+-...|+.+.|+++++.++ +....|...++++-+.|+-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 56777777777743 22222332322235688899999999998 88888888898888887765543
No 413
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.86 E-value=3.1e+02 Score=25.33 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhH--HHHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 270 NAVVDMYAKLGIINSACAVFEGLPVKDVIS--WNTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 270 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
-.|.......|.+|+|...++....++-.+ ...-.+.+...|+-++|..-|.+...
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 345566677788888888887776654332 22234567777787888777777766
No 414
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.68 E-value=4.5e+02 Score=27.15 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=57.6
Q ss_pred CHHHHHHH---HHHHhccCcHHHHHHHHHHhHHhhCCcCC--cchHHHHHHHHH-hcCCHHHHHHHHHhCCC--------
Q 005268 433 DHITFVSL---LTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFG-RAGHLGMAHNFIQNMPV-------- 498 (705)
Q Consensus 433 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~-------- 498 (705)
|..-|.++ +..+.+.|.+..|.++.+-+. .+.|+ +...-.+||.|+ |+++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 33444444 446777888888888887766 45554 445555667664 67777777777765422
Q ss_pred -CCCHHHHHHHHHHHHhcCCh---------------hHHHHHHHHHhccCC
Q 005268 499 -RPDASIWGALLGACRIHGNM---------------ELGAVASDRLFEVDS 533 (705)
Q Consensus 499 -~p~~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p 533 (705)
-|+ ..|..-+ ++...++. +.|...+++++..-|
T Consensus 176 ~lPn-~a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPN-FAFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCcc-HHHHHHH-HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 122 2233223 33334444 788888888888777
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.01 E-value=1.1e+03 Score=31.05 Aligned_cols=154 Identities=13% Similarity=0.048 Sum_probs=79.4
Q ss_pred HhhcCCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHh-ccCCCCeehHHHHHHHHHcCCChh
Q 005268 138 VCARSDNILSGLLIHLYI----VKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD-QMMERDVVSWNSIIAAYEQSNDPI 212 (705)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-~m~~~~~~~~~~li~~~~~~g~~~ 212 (705)
+-.+.+.+..|...++.- .+. ......+-.|...|+.-++.|....+.. ....++ ...-|-.....|++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 334555666666666652 111 1112233344457777777776666555 233332 223344455678888
Q ss_pred hHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHH-HHHHHhcCCHHHHHHHHh
Q 005268 213 TAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV-VDMYAKLGIINSACAVFE 290 (705)
Q Consensus 213 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~ 290 (705)
.|...|+.+.+. .|+ ..+++.++......+.++...-..+..... ..+...-++++ +.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 888888888664 344 556776776666666666555433333322 12233333222 223345555555555444
Q ss_pred cCCCCChhHHHHH
Q 005268 291 GLPVKDVISWNTL 303 (705)
Q Consensus 291 ~~~~~~~~~~~~l 303 (705)
..+..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455555554
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.96 E-value=4.3e+02 Score=26.68 Aligned_cols=120 Identities=12% Similarity=0.074 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHH
Q 005268 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSH------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 487 (705)
..++++.++++....+. |.+......|.+|-. .-+|..-..+|+.+.. +.|++.+--.-.-++++.--.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 35688888888888874 888888777776532 2367777777777663 4565543222223334444455
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 488 MAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 488 ~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
.++..++....+|. ...|..=...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 56666665543321 234445556788899999999999999998875543
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.71 E-value=1.2e+02 Score=32.64 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH-hcCCHHHHHHHHHhC-CCCC--CHHH
Q 005268 431 RPDHITFVSLLTACSH--SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG-RAGHLGMAHNFIQNM-PVRP--DASI 504 (705)
Q Consensus 431 ~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p--~~~~ 504 (705)
-|+..|...++.-... -..-+-|-.++..|.. .+.|--...| +..+|- -.|+...|...+..+ ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 4666665555443322 1233455666655542 4555433333 233444 468999998888776 2333 2334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
.-.|.+...+.|..-.|-.++.+.+.+....|-++..++++|....+.+.|.+.++.+.+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45566777777777789999999998887788899999999999999999999998887653
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.36 E-value=2.6e+02 Score=27.37 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH--CCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-
Q 005268 100 MISGYCQSGNAVEALDILDEMRL--EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK- 176 (705)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~- 176 (705)
=|.+++..+++.+++...-+--+ ..++|...-. -|-.|++.+.+....++-..-++..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 47888888999888776544432 1233333222 233356666666666665555443222233335555544433
Q ss_pred ----cCCHHHHHHHH
Q 005268 177 ----FGMMRHALRVF 187 (705)
Q Consensus 177 ----~g~~~~A~~~f 187 (705)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36666666554
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.06 E-value=2.1e+02 Score=24.21 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 417 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
+..+-+.....-.+-|++...-..|.||.+.+++..|.++|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34445566666678999999999999999999999999999888754 3333335655543
No 420
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.92 E-value=2.5e+02 Score=23.50 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=49.7
Q ss_pred hcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHH----
Q 005268 7 RCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVA---- 82 (705)
Q Consensus 7 ~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A---- 82 (705)
+.|.+++|..-++..|..+..-|...+|..- ..|.+.+..|-.++.+.|+++++
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~----------------------GFDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHD----------------------GFDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HH----------------------HHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccc----------------------cHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3456666666666666666555555554211 23566778888889999988765
Q ss_pred ---HHHhccCCC---CCcchHHHHH----HHHHhCCChhHHHHHHHH
Q 005268 83 ---RKLFDDMPV---RDSGSWNAMI----SGYCQSGNAVEALDILDE 119 (705)
Q Consensus 83 ---~~~f~~~~~---~~~~~~~~li----~~~~~~g~~~~A~~~~~~ 119 (705)
+..|++--+ ..-..|-+.+ .++-..|+.++|+.-|+.
T Consensus 79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 445554332 2223454443 345556888888877754
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.61 E-value=3.3e+02 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=12.0
Q ss_pred HHHHhccCcHHHHHHHHHHhHH
Q 005268 441 LTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~ 462 (705)
|.-|...|+++.+...|.....
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHH
Confidence 4445555666666655555443
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.32 E-value=73 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
--..++.++...|++++|.++.+.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555555555555555555544
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.15 E-value=1.2e+02 Score=27.50 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
.+..|.+.|.+++|.+++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34568888888999998888888 7765443
No 424
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.77 E-value=6.5e+02 Score=27.93 Aligned_cols=269 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005268 47 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRD-SGSWNAMISGYCQSGNAVEALDILDEMRLEGV 125 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (705)
..++-......--.+....++.|+........ ++-.++++++.. . ...|..++.+....|-.....-+.+.+....+
T Consensus 294 l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~-e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 294 LKHLVQDIASDVQEPAAAKFLRLVRLLRTLSE-EQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCH-HHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q ss_pred CC-ChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHH
Q 005268 126 SM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 204 (705)
Q Consensus 126 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 204 (705)
.+ .....-..+-........+....+++.+......+....+.+.+ .++.+|+.-
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~------------------------l~~~~lv~~ 427 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESAL------------------------LAYGSLVRR 427 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHH------------------------HHHHHHHHH
Q ss_pred HHcCCCh------hhHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 005268 205 YEQSNDP------ITAHGFFTTMQQAGI-QPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277 (705)
Q Consensus 205 ~~~~g~~------~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 277 (705)
++..... ++....+.+...... .-|..--...|.++++.|.......+...+. |.-..+..+....+.++.
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE--GAEPLSTFIRLAAILALR 505 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHH
Q ss_pred hc--CCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHh
Q 005268 278 KL--GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 343 (705)
Q Consensus 278 ~~--g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 343 (705)
+. ...+.+..++-.+-.........-|.+|...=+..--...++.|.......|+...-+-+.+..
T Consensus 506 ~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 506 NLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 425
>PF15161 Neuropep_like: Neuropeptide-like
Probab=35.67 E-value=24 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.839 Sum_probs=12.7
Q ss_pred eccccccchhHHHHHHhhh
Q 005268 660 KNLRVCGDCHNWTKFISQI 678 (705)
Q Consensus 660 ~n~~~~~~~h~~~~~~s~~ 678 (705)
.--|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4467899999765 66543
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.52 E-value=1.5e+02 Score=20.05 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 442 (705)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777776666666655543
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.30 E-value=54 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.3
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005268 206 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 240 (705)
Q Consensus 206 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 240 (705)
...|.-.+|..+|++|++.|-+||. |..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3457778899999999999999985 55555543
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.23 E-value=46 Score=32.53 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
..+.|+.++|..+|+.++.+.|+++....-++...-...++-+|..++-++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 457899999999999999999999998888877666666666776666443
No 429
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.27 E-value=5.4e+02 Score=28.58 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=22.1
Q ss_pred chhHHhhccCchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCC
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGR 383 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~k~g~ 383 (705)
+++.+|...|++..+.++++..... |-+.-...+|..+.-..+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 4555566666666665555555443 212223334444444444444
No 430
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.27 E-value=3.3e+02 Score=25.00 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=25.7
Q ss_pred HhcCCHHHHHHHHhhCC------CCCcchHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 005268 379 GKCGRIDDAMSLFYQVP------RSSSVPWNAIIS-CHGIHGQ--GDKALNFFRQMLDE 428 (705)
Q Consensus 379 ~k~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 428 (705)
...|++++|..-++++. ++-...|+.+.. +++.++. +-+|..++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 34566666666655553 223334555554 5666554 34555555554443
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.01 E-value=2.7e+02 Score=26.31 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=26.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH----HHHhcCCHHHHHHHHHh
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD----LFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 495 (705)
+......|++++|++........ -+.-|.+.+--|.. =+.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34445666666666665544322 22223222211111 14567777777777754
No 432
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.58 E-value=4.8e+02 Score=27.83 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcch--------HHHHHH
Q 005268 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVP--------WNAIIS 407 (705)
Q Consensus 340 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~--------~~~li~ 407 (705)
..++....++..++.-.+.+....- .+....-.--+.+.-.|++.+|.+++.... .....| ||.|..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhcCChHHHHHHHHHHHH-------cCCCCC-----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC
Q 005268 408 CHGIHGQGDKALNFFRQMLD-------EGVRPD-----------HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~-------~g~~p~-----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 469 (705)
.+.+.|.+..+..+|.+.++ .|++|. .++|+.-+ .+.+.|++-.|.+.|....+.+.-.|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHHhcCcH
Q ss_pred cchHHHHHHHHH
Q 005268 470 LKHYGCMVDLFG 481 (705)
Q Consensus 470 ~~~~~~li~~~~ 481 (705)
.|-.|...+.
T Consensus 371 --lWLRlAEcCi 380 (696)
T KOG2471|consen 371 --LWLRLAECCI 380 (696)
T ss_pred --HHHHHHHHHH
No 433
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=32.49 E-value=1.1e+02 Score=29.76 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.+=+++...++++.|....++.+.++|+++.-..--+-+|.+.|...-|.+-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344567888899999999999999999999988888899999999999998888776554
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.39 E-value=2.1e+02 Score=30.86 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhccCCC-----CeehHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 005268 168 NNLINMYAKFGMMRHALRVFDQMMER-----DVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 224 (705)
Q Consensus 168 ~~Li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 224 (705)
..|+.-|.+.+++++|..++..|.=. --.+.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45778899999999999999988532 1223445556666666555566666665544
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.28 E-value=4.8e+02 Score=25.39 Aligned_cols=158 Identities=12% Similarity=0.010 Sum_probs=73.5
Q ss_pred CCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCChhhHHhHHHHhhcCCChH-HHHH
Q 005268 76 FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR----LEGVSMDPITVASILPVCARSDNIL-SGLL 150 (705)
Q Consensus 76 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~ 150 (705)
.+++++|.+++-. =...+.++|+...|.++-.-|. +.++++|......++..+...+.-+ .-..
T Consensus 3 ~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 4556666665432 1334556666665555543333 3456666655555554444332211 1122
Q ss_pred HHHHHH---HhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCC
Q 005268 151 IHLYIV---KHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 225 (705)
Q Consensus 151 ~~~~~~---~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 225 (705)
+...++ +.| ...|+.....+...|.+.|++.+|+.-|-.-..++...+-.++......|...++--++.+
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R----- 146 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR----- 146 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH-----
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH-----
Confidence 222222 222 3347788888999999999999999888544433333332233333333333333111111
Q ss_pred CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHh
Q 005268 226 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259 (705)
Q Consensus 226 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 259 (705)
.+--+...+++..|...+....+.
T Consensus 147 ----------aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 ----------AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----------HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112244556677777666655544
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.27 E-value=3.1e+02 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHh
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFE 290 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~ 290 (705)
.-...|......+.+.|++++|.++|+
T Consensus 97 ~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 97 KLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp TBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334456666666777777777777764
No 437
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.13 E-value=7.7e+02 Score=27.66 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHH-hCCChhHHHHHHHHHHHCCCCCCh
Q 005268 51 HCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC-QSGNAVEALDILDEMRLEGVSMDP 129 (705)
Q Consensus 51 ~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~ 129 (705)
|..+....-+.++..|..||.+-.+| ++.+.+-+.--|+.+..++-.+...+. ...++++|...+++.....-+++-
T Consensus 18 ~~~~~~~~~~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~ 95 (608)
T PF10345_consen 18 HSLATKVKSEEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL 95 (608)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33333333344566677777665544 122221111111224445556666665 466778888887766543322221
Q ss_pred h----h-HHhHHHHhhcCCChHHHHHHHHHHHHhCC----CCchhHHHHH-HHHHHccCCHHHHHHHHhccCC-----CC
Q 005268 130 I----T-VASILPVCARSDNILSGLLIHLYIVKHGL----EFNLFVSNNL-INMYAKFGMMRHALRVFDQMME-----RD 194 (705)
Q Consensus 130 ~----t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~L-i~~y~~~g~~~~A~~~f~~m~~-----~~ 194 (705)
. . -..++..+.+.+.. .|....+..++.-- .+-...+.-+ +..+...++...|.+.++.+.. .|
T Consensus 96 ~d~k~~~~~ll~~i~~~~~~~-~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 96 TDLKFRCQFLLARIYFKTNPK-AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 1 1 12223333333333 37777766655321 1222222222 2223233677777777665532 12
Q ss_pred e--ehHHHHHHHH--HcCCChhhHHHHHHHHHH
Q 005268 195 V--VSWNSIIAAY--EQSNDPITAHGFFTTMQQ 223 (705)
Q Consensus 195 ~--~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 223 (705)
. ...-.++.+. .+.+.++++++.++++..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 1 2222233222 344556667777766643
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.02 E-value=68 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
--.+|.+|.+.|++++|.++.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33467777777888888777777665
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.65 E-value=75 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 132 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 132 (705)
||..|....+.|++++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 678888888888888888888888887765433333
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.37 E-value=5e+02 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhH
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 315 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 315 (705)
-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc
Confidence 4677888899999999999999988865444444443333433333343333
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.29 E-value=3.1e+02 Score=29.78 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCcCC------------cchHHHHHHHHHhcCCHHHHHHHHHhCC--------------
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFGIKPH------------LKHYGCMVDLFGRAGHLGMAHNFIQNMP-------------- 497 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------- 497 (705)
+.+...++++.+.|..... -..|+ +.+.-.|.+++-.+|+.+-|-+++++.-
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred ---------CCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-Ccchhhhhhhhhh
Q 005268 498 ---------VRPDASIWGAL---LGACRIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYA 547 (705)
Q Consensus 498 ---------~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 547 (705)
..-|...|.+| +....+.|-+.-|.+..+-+++++|. ||.....+++.|+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 442
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.80 E-value=2.8e+02 Score=23.44 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHh
Q 005268 215 HGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRR 259 (705)
Q Consensus 215 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 259 (705)
.+-++.+..-.+.|++...-..|+||.+.+++..+..+++-+...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344455556678888888888899999999888888888877554
No 443
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.49 E-value=1.1e+02 Score=23.12 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=29.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 448 (705)
...|+.+.+.+++++..+.|..|..+....+.-+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999888888777666665555443
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.06 E-value=6.8e+02 Score=26.08 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 268 IGNAVVDMYAKLGIINSACAVFEGLPV------KDVISWNTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 268 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
...-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456678889999999999999988542 1234566666666677888887777776665
No 445
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=28.42 E-value=7.2e+02 Score=26.19 Aligned_cols=46 Identities=7% Similarity=-0.139 Sum_probs=22.9
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHc
Q 005268 162 FNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 207 (705)
Q Consensus 162 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 207 (705)
++..+....+..+.+.+...-...+...+..++...-.+.+.++..
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 3444556666666665555555444444444444443334444433
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.74 E-value=2.3e+02 Score=23.98 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHhccCCCCCcch-----HHHHHHHHHhCCChhHHHHHHH
Q 005268 82 ARKLFDDMPVRDSGS-----WNAMISGYCQSGNAVEALDILD 118 (705)
Q Consensus 82 A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~ 118 (705)
+..+|..|....+.+ |..-...+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666555443332 4444555556677777766664
No 447
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=27.50 E-value=83 Score=32.92 Aligned_cols=84 Identities=26% Similarity=0.424 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCcccCCcccccccchhhhhhhhcccchhhHHhcccc----cCCCCCceEEe-eccccccchhHHHHHH
Q 005268 601 ELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII----SSPPKSPIQIF-KNLRVCGDCHNWTKFI 675 (705)
Q Consensus 601 ~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~~~~~~~-~n~~~~~~~h~~~~~~ 675 (705)
..++....+.+.|+.|-...+......+.....+..+-.+ ..+||+= ...+..|+.++ |-..+.+ +.++| |
T Consensus 277 ~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g--~p~~K-i 352 (405)
T COG1488 277 LSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG--KPVAK-I 352 (405)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC--cccee-e
Confidence 3556788888999999443343355555555555444444 7788854 33333445444 6666655 77888 7
Q ss_pred hhhhCceEEEecC
Q 005268 676 SQITEREIIVRDS 688 (705)
Q Consensus 676 s~~~~~~~~~~~~ 688 (705)
|+-+++..+.|..
T Consensus 353 s~~Pgkk~~~r~~ 365 (405)
T COG1488 353 SKNPGKKQVYRSA 365 (405)
T ss_pred cCCCccceeecch
Confidence 8889998887765
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.45 E-value=3.8e+02 Score=22.63 Aligned_cols=42 Identities=7% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 005268 417 KALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
++.++|..|...|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665554432 34444445555566666666554
No 449
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.93 E-value=2.1e+02 Score=22.21 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHH
Q 005268 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 316 (705)
.+...+.+.|.++++.++.+...+|.....++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34456678888888888888888888888888877765544
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.66 E-value=3.2e+02 Score=23.82 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCC
Q 005268 424 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 485 (705)
Q Consensus 424 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 485 (705)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+. +..-+..+...-++.+...|-
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 3344444444321 12333333333335555555555543 222223333333355555554
No 451
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.56 E-value=3.9e+02 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=13.0
Q ss_pred hhhhhhcCCcchHHHHHHHH
Q 005268 543 SNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 543 ~~~~~~~g~~~~a~~~~~~m 562 (705)
+-++...|+.++|.+.|++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566678888888777654
No 452
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=1.1e+03 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 005268 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 323 (705)
Q Consensus 270 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (705)
.+........|+.+....+-.-| .-|..++.-+.+.+.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455556655554443322 23566777788888888888877654
No 453
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.72 E-value=2.9e+02 Score=29.49 Aligned_cols=58 Identities=10% Similarity=0.260 Sum_probs=36.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
..|-..+.-|+..+++++|.++.+-.. +...|.+|......+.++.-++.+|..+.+.
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 345555666667777777777665543 4556777766666666666666666655554
No 454
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.51 E-value=6e+02 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=14.1
Q ss_pred HHHHHHHcCChhHHHHHHHhhhh
Q 005268 303 LITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
++..+-+.|+++++.+.++++..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~ 29 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIE 29 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHc
Confidence 34445566666666666666665
No 455
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.45 E-value=2.2e+02 Score=21.68 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=7.1
Q ss_pred HcCCChhHHHHHhc
Q 005268 74 CRFGLANVARKLFD 87 (705)
Q Consensus 74 ~~~g~~~~A~~~f~ 87 (705)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455555555554
No 456
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.38 E-value=21 Score=35.48 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=71.3
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCC
Q 005268 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 592 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 592 (705)
...|.++.|+..+-.+++++|.....|..-++++.+.+++..|.+-.....+.+.....+.-| .
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf----------------r 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF----------------R 188 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch----------------h
Confidence 356789999999999999999999999999999999999999998888777665443333322 1
Q ss_pred CCc---HHHHHHHHHHHHHHHhCCcccCCcccccccch
Q 005268 593 PKY---EKIYDELRNLTAKMKSLGYVPDKSFVLQDVEE 627 (705)
Q Consensus 593 ~~~---~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~ 627 (705)
... ...+.+....+..-.+.+|.++...++..|..
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 111 11233344556666678888888877765533
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.36 E-value=5.1e+02 Score=25.94 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC-cch----HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 372 TCLVDMYGKCGRIDDAMSLFYQVPRSS-SVP----WNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 372 ~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
..|.-+-.|.|++.+|.+.|+.+.+.- ..+ -..||.++....-+.+.-.++-+--+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555667899999999998876432 222 33466666665555555555554444
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.23 E-value=3.8e+02 Score=28.02 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH------cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLD------EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMM 460 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~------~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 460 (705)
|+..++-.||+..|+++++.+.- ..+.+-. .||-.+.-+|...+++.+|.+.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666655554321 1122222 24445555666666666666666554
No 459
>PRK14015 pepN aminopeptidase N; Provisional
Probab=25.07 E-value=1.2e+03 Score=27.59 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCh------hHHHH-HHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHH
Q 005268 502 ASIWGALLGACRIHGNM------ELGAV-ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~------~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
+.-.++|+.+++.++.. ..+.+ +.+.++++++-||..-..|+..+.+-.++++.++..
T Consensus 783 pn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~ 847 (875)
T PRK14015 783 PNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQAL 847 (875)
T ss_pred CcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHH
Confidence 33458899988654432 34555 556788999999998888999999999998877643
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.78 E-value=6.1e+02 Score=24.08 Aligned_cols=113 Identities=16% Similarity=0.266 Sum_probs=60.8
Q ss_pred hcCCHHHHHHHHhhCCCCCcchH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVPW--NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
..+++++|.+.+-. +...+| .-++.++..+|+.+.|+.+++.+.-..- +......++.+ ...+.+.+|..+-
T Consensus 90 D~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 34667777776633 333232 2477777778888888888877543211 12222333333 4457888888776
Q ss_pred HHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 005268 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA 502 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 502 (705)
+...+. -....+..++..+.....-....+.+-.+|+.+..
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 544321 11335666666655433223334444455655443
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.42 E-value=1.9e+02 Score=22.38 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhH
Q 005268 47 GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVE 112 (705)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 112 (705)
...++..+.+.|+- +....-...+...+.+.|.++++.+|.+...+|.++..++-..|...-
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 44566666666642 222222333455667888888888888888888888888877765443
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.38 E-value=3.4e+02 Score=24.78 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005268 477 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 507 (705)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 507 (705)
+-.+.+.|.+++|.+++++.-..|+......
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 3456666777777777666633444443333
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=7.4e+02 Score=24.96 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CcchHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVPRS--------SSVPWNAI-ISCHGIHGQGDKALNFFRQMLDEGVRPDH----IT 436 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 436 (705)
..-.....|++.|+.+.|.+.+.+.-++ |++-+..- .--|..+.-..+-++..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4455667788888888888887765433 33322222 22233444456667777777777754433 24
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
|..+- |....++.+|-.+|-....
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 44442 4555677777777765543
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.00 E-value=1e+03 Score=27.70 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=85.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005268 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
...||+++.|++.-..+- |...|..|+..-...|+.+-|.-.|++... |..|--.|.-.|+.++-.++-
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 456899999888766654 445799999999999999999988887765 333333566678888777665
Q ss_pred HHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
+-... ..|.. .....-.-.|+.++=..+++..+.-|-. |. .-..+|.-++|+++.++.-.
T Consensus 722 ~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 722 KIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 44432 22211 1111112368888888888887644422 21 12467888889998888766
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.81 E-value=3e+02 Score=24.74 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHH
Q 005268 425 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 425 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 487 (705)
+.+.|++++..-. .++......+..-.|.++++.+.+. +..++..+...-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4455666665433 3333333344556777888887765 55556655555667788888764
No 466
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.77 E-value=3.6e+02 Score=21.16 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 410 GIHGQGDKALNFFRQMLD----EGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
.+.|++.+|++.+.+..+ .+..+. ......+.......|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666666555554443 221111 11222223344555666666666655543
No 467
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.77 E-value=2.8e+02 Score=30.64 Aligned_cols=72 Identities=6% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCcHH------HHHHHHHHhHHhhCCcCCcchHHH
Q 005268 404 AIISCHGIHGQGDKALNFFRQMLDEG--VRPDHITFVSLLTACSHSGLVS------EGQRYFHMMQEEFGIKPHLKHYGC 475 (705)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~~p~~~~~~~ 475 (705)
+|+.+|..+|++..+.++++...... -+-=...++..+....+.|.++ .+.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 78888888888888888888887642 1111246677777777777543 233333322 34556666666
Q ss_pred HHHH
Q 005268 476 MVDL 479 (705)
Q Consensus 476 li~~ 479 (705)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6543
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.43 E-value=4e+02 Score=23.20 Aligned_cols=45 Identities=9% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 005268 200 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 244 (705)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 244 (705)
.++..+.+.+..-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555555555556666666655555444444444444444333
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.38 E-value=8.5e+02 Score=25.29 Aligned_cols=52 Identities=13% Similarity=-0.102 Sum_probs=32.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHh--ccCcHHHHHHHHHH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL----TACS--HSGLVSEGQRYFHM 459 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~--~~g~~~~a~~~~~~ 459 (705)
.+.+.+++..|.++|+++.+..++|+..++...+ .+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3456678889999999998876655554433332 2332 24456677777653
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.05 E-value=3.7e+02 Score=24.15 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh
Q 005268 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246 (705)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 246 (705)
-..++..+...++.-.|.++++.+.+.+..++..|.--.|..+...|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3344455555555666777777777766666666665555555555543
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.01 E-value=6.7e+02 Score=23.98 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhc
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 483 (705)
++...-+.|+++++.+.++++...+...+..--+.+-.+|- ..|....+++.+..+.+...-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45556677788888888888887655555443333333442 234445555555555443111111 2222222222111
Q ss_pred ------CCHHHHHHHHHhC--C--CCCCHH-HHHHHH-HHHH----------hcCChhHHHHHHHHHhc-----cCCCCc
Q 005268 484 ------GHLGMAHNFIQNM--P--VRPDAS-IWGALL-GACR----------IHGNMELGAVASDRLFE-----VDSENV 536 (705)
Q Consensus 484 ------g~~~~A~~~~~~~--~--~~p~~~-~~~~ll-~~~~----------~~g~~~~a~~~~~~~~~-----~~p~~~ 536 (705)
.--.+.+.+++.. | ..+... .|.-+- .-|+ +..-.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 0112344444443 1 111111 122211 1111 11123667777777664 567776
Q ss_pred chhhhhhh----hhhhcCCcchHHHHHHHHHhCCC
Q 005268 537 GYYVLMSN----IYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 537 ~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
....+..| .|-..|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 54433222 34568999999988888776543
No 472
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=22.80 E-value=1e+03 Score=26.07 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=62.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-cchhhhhhhhhhhc
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-VGYYVLMSNIYANV 549 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 549 (705)
..-.+|-+-+....++.-|.++-.+.++. ....|.+-.-+|.+.+++..|..-|.+.+++.-.+ |....-+.+. ...
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ieG 634 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IEG 634 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hcC
Confidence 34456666666677777777777777653 35589999999999999999999999999986433 2333334432 233
Q ss_pred CCcchHHHHHHHHHhCCCccCC
Q 005268 550 GKWEGVDEVRSLARDRGLKKTP 571 (705)
Q Consensus 550 g~~~~a~~~~~~m~~~~~~~~~ 571 (705)
|-.-++ +....|.+.-.++.|
T Consensus 635 gpp~dV-q~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 635 GPPRDV-QDVREMLDHLAKPAP 655 (1141)
T ss_pred CCcchH-HHHHHHHHHhccCCc
Confidence 322333 333344454455544
No 473
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=22.29 E-value=71 Score=31.33 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCcccCCcccccccchhhhhhhhcccchhhHHhcccccCCCCCceEEeeccccccchhHHHHHHhhhhCce
Q 005268 603 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITERE 682 (705)
Q Consensus 603 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~n~~~~~~~h~~~~~~s~~~~~~ 682 (705)
.+|..+|++.|.+.- ...+.|.|+.||-++.|||..- |+|----+...|.....+..
T Consensus 236 NDLY~EM~E~gVI~l-----------------~~~~SKvaLV~GQMNePPGARa------RV~LTgLTvAEYFRD~egQD 292 (521)
T KOG1350|consen 236 NDLYHEMIESGVINL-----------------EGETSKVALVYGQMNEPPGARA------RVALTGLTVAEYFRDQEGQD 292 (521)
T ss_pred cHHHHHHHhcCeeec-----------------cCCcceEEEEeeccCCCCCcee------eeeeecccHHHHhhccccce
Confidence 367888998886521 1234578999999999999875 44555567788999999998
Q ss_pred EEEecCCcccccccc
Q 005268 683 IIVRDSNRFHHFKDG 697 (705)
Q Consensus 683 ~~~~~~~~~h~~~~g 697 (705)
.++=-.|.|....-|
T Consensus 293 VLLFIDNIFRFtQAG 307 (521)
T KOG1350|consen 293 VLLFIDNIFRFTQAG 307 (521)
T ss_pred EEEeehhhhhhhccc
Confidence 888777888544443
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.16 E-value=1.3e+02 Score=33.44 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 96 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 175 (705)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 175 (705)
.|..-+..+...++.. ....+....+-.-.+.....-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 3554444444333221 334444443322234445555666666666666666665544333211 123344455556
Q ss_pred ccCCHHHHHHHHhccCC----CCeehHHHH-------------HHH---------HHcCCChhhHHHHHHHHHHCCCCCC
Q 005268 176 KFGMMRHALRVFDQMME----RDVVSWNSI-------------IAA---------YEQSNDPITAHGFFTTMQQAGIQPD 229 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~----~~~~~~~~l-------------i~~---------~~~~g~~~~A~~~~~~m~~~g~~p~ 229 (705)
++|+......+-+.+.+ ++...+..+ +.. ..+.|+..+|.+.+-.+....+.|.
T Consensus 450 ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcH
Confidence 66665555444443321 100000000 011 1334667777777777776666666
Q ss_pred hhhHHHHHHH
Q 005268 230 LLTLVSLTSI 239 (705)
Q Consensus 230 ~~t~~~ll~a 239 (705)
.+-...+..+
T Consensus 530 ~f~~~LL~d~ 539 (566)
T PF07575_consen 530 SFWPLLLCDA 539 (566)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6655444443
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=22.11 E-value=5.7e+02 Score=25.85 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 005268 414 QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 492 (705)
++.....+|+-+.. +.|+++ |.|-.. +.....-.+.++...+.+.....+.--...+..-.+++.+.|+.+||..-
T Consensus 311 DW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred ChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 45566667777776 567764 555443 45555567777777776654322222222345557889999999999999
Q ss_pred HHhC
Q 005268 493 IQNM 496 (705)
Q Consensus 493 ~~~~ 496 (705)
|++.
T Consensus 388 ydrA 391 (415)
T COG4941 388 YDRA 391 (415)
T ss_pred HHHH
Confidence 9876
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.97 E-value=6.4e+02 Score=23.40 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC------------------
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP------------------ 497 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------ 497 (705)
..+.++..|...|+++.|.+.|.-+.+..++.... .|..=+..+.+.+.-....++++.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~-~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS-LWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh-cchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Q ss_pred ----------CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCC---Ccchhhhhhhhh
Q 005268 498 ----------VRPD---ASIWGALLGACRIHGNMELGAVASDRLFE--VDSE---NVGYYVLMSNIY 546 (705)
Q Consensus 498 ----------~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~---~~~~~~~l~~~~ 546 (705)
..|. ...|..|+....+....+.+.++.+++-+ +.|. +++.+...+-++
T Consensus 122 ~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~ 188 (199)
T PF04090_consen 122 APVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCH 188 (199)
T ss_pred cccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
No 477
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.35 E-value=1e+03 Score=25.44 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCCCHHH--HHHHHHH-----HHcCCChhHHHHHhccCCC---CCcchHHHHHHHHH-hCCChhHHHHHH
Q 005268 49 KIHCSVLKLGFEWDVFV--AASLLHM-----YCRFGLANVARKLFDDMPV---RDSGSWNAMISGYC-QSGNAVEALDIL 117 (705)
Q Consensus 49 ~~~~~~~~~g~~~~~~~--~~~ll~~-----y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~-~~g~~~~A~~~~ 117 (705)
++...+++.|..++... ....+.. ....|..+-+.-+++.-.. +|...++.|..+.. ..|+.+ ++
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~----iv 124 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYS----IV 124 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHH----HH
Confidence 44555566665554321 1223333 4555666666555554332 22223344443332 444433 33
Q ss_pred HHHHHCCCCCChhh--HHhHHHHhhcCC--ChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHccCCHHHHHHHHhccC
Q 005268 118 DEMRLEGVSMDPIT--VASILPVCARSD--NILSGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQMM 191 (705)
Q Consensus 118 ~~m~~~g~~p~~~t--~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~ 191 (705)
+.+.+.|..++... -.+.+..++..+ +.+ +.+.+++.|..++.. ...+-+...+..|+.+-+.-+++.-.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA 200 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 33444554443221 122333333444 333 344445555544322 12334555566666666666665443
Q ss_pred C
Q 005268 192 E 192 (705)
Q Consensus 192 ~ 192 (705)
.
T Consensus 201 ~ 201 (480)
T PHA03100 201 D 201 (480)
T ss_pred C
Confidence 3
No 478
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=2.4e+02 Score=28.34 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=52.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 478 DLFGRAGHLGMAHNFIQNM-P---VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
+-|.+..++..|...|.+- . -.|| .+.|+.=..+-...||+..++.=..+++.++|.+..+|..=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 4455666677777766554 1 1233 45565555566667888888888888888888887777766666666666
Q ss_pred cchHHHH
Q 005268 552 WEGVDEV 558 (705)
Q Consensus 552 ~~~a~~~ 558 (705)
+++|...
T Consensus 169 ~~~a~nw 175 (390)
T KOG0551|consen 169 FAEAVNW 175 (390)
T ss_pred HHHHHHH
Confidence 4444443
No 479
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=21.06 E-value=1.1e+02 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccCCccc
Q 005268 596 EKIYDELRNLTAKMKSLGYVPDKSFV 621 (705)
Q Consensus 596 ~~~~~~~~~l~~~m~~~g~~pd~~~~ 621 (705)
.++.+.+++...+++..|+.||-..+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45667788888999999999997544
No 480
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.02 E-value=2.8e+02 Score=31.08 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.1
Q ss_pred cccchhHHHHHHhhhhCceEEEecCCc
Q 005268 664 VCGDCHNWTKFISQITEREIIVRDSNR 690 (705)
Q Consensus 664 ~~~~~h~~~~~~s~~~~~~~~~~~~~~ 690 (705)
.|..-|+|.--.|+|.+-.+--||.|+
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhcCceeeeeehhceecccccccccce
Confidence 466677777667777776666666554
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.93 E-value=2.8e+02 Score=26.78 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHcCCChhhHHHHHH
Q 005268 203 AAYEQSNDPITAHGFFT 219 (705)
Q Consensus 203 ~~~~~~g~~~~A~~~~~ 219 (705)
..|...|++.+|+.-|+
T Consensus 18 rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 44444444444444443
No 482
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.92 E-value=8.9e+02 Score=24.63 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALN-FFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 452 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 452 (705)
+.|..++.++-+.+..+-+.+..-......++..++....-.+...+ +++.+... ||..+...++.|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 34444454444444444444443333334444444444433333333 33333332 777777778887777666555
Q ss_pred HHHHHHHhHH
Q 005268 453 GQRYFHMMQE 462 (705)
Q Consensus 453 a~~~~~~m~~ 462 (705)
....+.....
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554554443
No 483
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=20.46 E-value=65 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.9
Q ss_pred eEEeeccccccchhHHHH
Q 005268 656 IQIFKNLRVCGDCHNWTK 673 (705)
Q Consensus 656 ~~~~~n~~~~~~~h~~~~ 673 (705)
++|.||.-+|--||+..-
T Consensus 80 Yqvtkn~N~CLsCH~~e~ 97 (155)
T COG3043 80 YQVTKNTNRCLSCHSVEN 97 (155)
T ss_pred ceeecccchhhhccCHHH
Confidence 689999999999998764
No 484
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.33 E-value=31 Score=24.08 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=9.0
Q ss_pred ccccccchhHHH
Q 005268 661 NLRVCGDCHNWT 672 (705)
Q Consensus 661 n~~~~~~~h~~~ 672 (705)
-..+|||||.--
T Consensus 19 miYiCgdC~~en 30 (62)
T KOG3507|consen 19 MIYICGDCGQEN 30 (62)
T ss_pred EEEEeccccccc
Confidence 357899999643
No 485
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.33 E-value=7.7e+02 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 005268 396 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 396 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 435 (705)
+|.+.....|+..+ ..++.++|.+++.++-+.|..|...
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 34444444455443 3456777777777777777766543
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=20.29 E-value=8.2e+02 Score=23.96 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=39.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCc-chHHHHHHHHHh----cCCh
Q 005268 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSLFYQVPRSSS-VPWNAIISCHGI----HGQG 415 (705)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~----~g~~ 415 (705)
..+++..+...+......+ +......+..+|.. ..+..+|.+.|......+. .....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 3456666766666665533 22333334444432 3345556666664443333 223333333333 2245
Q ss_pred HHHHHHHHHHHHcCC
Q 005268 416 DKALNFFRQMLDEGV 430 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~ 430 (705)
.+|..+|++..+.|.
T Consensus 130 ~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 130 VKALKYYEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHHHHcCC
Confidence 555555555555553
No 487
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=20.20 E-value=5.4e+02 Score=21.81 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHH
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIW-GALLGACRIHGNMELGAVASDR 527 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~ 527 (705)
.+..++..++.=.|..++|.++++..+.-++-... .-++..|+...+-++-..+-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555666666677777777777666544443322 3456666666655554444333
No 488
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.02 E-value=4.5e+02 Score=27.49 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVP-----------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
....|+..++-.|++..|.++++.+. .-.+.++.-+.-+|...+++.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888888888877664 22334466677788888999999998887653
Done!