Query 005268
Match_columns 705
No_of_seqs 857 out of 4450
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.9E-43 2.4E-47 389.7 34.8 481 71-566 61-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.4E-44 361.9 32.6 477 29-548 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-26 2.7E-30 237.3 37.2 370 101-551 6-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 2.7E-27 9.4E-32 253.0 19.9 184 298-483 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.7E-25 3.3E-29 229.0 39.1 351 202-565 6-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 5.8E-27 2E-31 250.5 19.4 181 97-278 29-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1E-22 3.5E-27 221.9 28.6 438 97-542 9-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 8.5E-22 2.9E-26 210.9 32.9 335 194-561 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.8E-22 1.7E-26 216.6 27.3 428 130-566 7-479 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.5E-26 214.5 29.3 420 94-565 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.6E-21 1.6E-25 205.2 28.7 342 163-535 25-414 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.6E-25 207.3 28.3 438 63-540 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.1E-18 1.4E-22 175.9 28.5 309 196-547 4-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 4.6E-18 1.6E-22 175.5 28.9 294 265-565 2-335 (359)
15 3hym_B Cell division cycle pro 99.8 2.4E-17 8.2E-22 168.0 26.6 286 262-552 18-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 1.4E-16 4.6E-21 162.2 27.0 343 74-496 14-369 (449)
17 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.4E-22 167.6 20.9 320 176-533 15-343 (449)
18 1xi4_A Clathrin heavy chain; a 99.8 2.5E-14 8.5E-19 161.6 46.6 381 129-557 985-1376(1630)
19 2xm6_A Protein corresponding t 99.8 9E-16 3.1E-20 165.8 33.9 365 128-548 38-452 (490)
20 2ooe_A Cleavage stimulation fa 99.8 1.1E-15 3.8E-20 166.8 33.6 128 92-223 11-158 (530)
21 3hym_B Cell division cycle pro 99.7 1.5E-16 5.1E-21 162.0 24.4 264 294-565 19-299 (330)
22 2ooe_A Cleavage stimulation fa 99.7 2.9E-15 9.8E-20 163.6 35.9 410 128-565 12-492 (530)
23 1fch_A Peroxisomal targeting s 99.7 5.7E-17 1.9E-21 168.2 20.4 277 276-561 35-355 (368)
24 1fch_A Peroxisomal targeting s 99.7 4.5E-16 1.5E-20 161.4 25.6 245 175-461 36-312 (368)
25 4eqf_A PEX5-related protein; a 99.7 6E-16 2.1E-20 160.3 22.7 227 194-462 64-309 (365)
26 1xi4_A Clathrin heavy chain; a 99.7 4.3E-13 1.5E-17 151.8 46.0 380 62-493 984-1378(1630)
27 4g1t_A Interferon-induced prot 99.7 1.1E-15 3.8E-20 164.3 24.4 364 164-575 51-469 (472)
28 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.7E-20 149.3 25.3 264 279-557 12-286 (291)
29 4eqf_A PEX5-related protein; a 99.7 2.4E-16 8.3E-21 163.3 17.7 258 296-561 64-352 (365)
30 2xm6_A Protein corresponding t 99.7 1.4E-13 4.9E-18 148.5 39.2 352 62-463 38-432 (490)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.8E-20 155.4 18.6 255 300-562 24-312 (327)
32 3cv0_A Peroxisome targeting si 99.7 1.5E-14 5.2E-19 146.9 26.9 226 194-461 20-267 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 4E-17 1.4E-21 178.7 7.1 148 62-209 126-286 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 9.2E-15 3.1E-19 145.6 23.8 226 166-435 36-269 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-16 4.9E-21 174.4 7.9 131 364-495 123-261 (1134)
36 4g1t_A Interferon-induced prot 99.6 7.1E-14 2.4E-18 150.2 28.9 387 94-543 51-471 (472)
37 2pl2_A Hypothetical conserved 99.6 5.6E-14 1.9E-18 133.5 18.3 193 365-562 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 6.6E-14 2.3E-18 136.7 18.2 218 298-565 6-236 (258)
39 3u4t_A TPR repeat-containing p 99.5 1.4E-13 4.6E-18 135.9 18.1 243 270-550 7-269 (272)
40 3uq3_A Heat shock protein STI1 99.5 1.5E-13 5.1E-18 134.2 17.7 241 265-544 4-255 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.5E-18 135.0 18.2 240 310-559 18-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.5 5.7E-12 2E-16 133.9 24.9 367 141-563 15-419 (452)
43 2h6f_A Protein farnesyltransfe 99.5 9.9E-13 3.4E-17 135.5 18.0 242 297-547 97-364 (382)
44 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.3E-17 126.4 16.6 201 343-547 33-238 (243)
45 2vq2_A PILW, putative fimbrial 99.4 3E-12 1E-16 121.9 18.5 197 367-565 7-211 (225)
46 2ho1_A Type 4 fimbrial biogene 99.4 2.4E-12 8.2E-17 125.3 18.1 196 368-565 37-238 (252)
47 1ouv_A Conserved hypothetical 99.4 1.1E-11 3.8E-16 122.3 22.9 223 296-566 5-252 (273)
48 2pl2_A Hypothetical conserved 99.4 3.6E-12 1.2E-16 121.0 17.9 109 382-495 98-210 (217)
49 2q7f_A YRRB protein; TPR, prot 99.4 1.3E-12 4.5E-17 126.2 15.0 198 366-566 21-223 (243)
50 2ho1_A Type 4 fimbrial biogene 99.4 9.6E-12 3.3E-16 121.0 20.6 204 297-540 37-247 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.4E-12 2.5E-16 123.4 19.5 213 208-427 18-243 (275)
52 3u4t_A TPR repeat-containing p 99.4 1.6E-11 5.5E-16 120.8 21.7 239 230-510 3-263 (272)
53 3e4b_A ALGK; tetratricopeptide 99.4 5.5E-12 1.9E-16 134.0 19.4 343 201-567 9-389 (452)
54 3sf4_A G-protein-signaling mod 99.4 1.9E-12 6.3E-17 135.8 15.5 197 369-565 88-336 (406)
55 1ouv_A Conserved hypothetical 99.4 2.2E-11 7.5E-16 120.1 22.0 229 263-537 3-257 (273)
56 4a1s_A PINS, partner of inscut 99.4 9.1E-13 3.1E-17 138.7 12.7 259 304-565 55-372 (411)
57 2h6f_A Protein farnesyltransfe 99.4 6.9E-12 2.4E-16 129.2 18.9 225 334-565 98-348 (382)
58 2vq2_A PILW, putative fimbrial 99.4 1.3E-11 4.4E-16 117.5 19.4 207 296-542 7-222 (225)
59 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.1E-17 130.8 14.5 258 305-565 13-332 (338)
60 3vtx_A MAMA; tetratricopeptide 99.4 9.6E-12 3.3E-16 114.5 16.6 162 399-565 5-170 (184)
61 4abn_A Tetratricopeptide repea 99.4 1.6E-12 5.4E-17 139.1 12.7 207 349-561 84-317 (474)
62 4e6h_A MRNA 3'-END-processing 99.4 9.4E-10 3.2E-14 120.9 34.5 415 92-537 64-576 (679)
63 3sf4_A G-protein-signaling mod 99.3 8.7E-12 3E-16 130.6 15.8 154 401-554 189-365 (406)
64 3vtx_A MAMA; tetratricopeptide 99.3 2.6E-11 9E-16 111.6 15.6 166 367-537 4-176 (184)
65 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.1E-15 116.4 21.1 218 314-537 33-276 (308)
66 4a1s_A PINS, partner of inscut 99.3 1.4E-11 4.6E-16 129.6 13.9 196 338-533 131-374 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-11 8.1E-16 135.2 16.3 159 401-564 11-173 (723)
68 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 121.6 16.0 133 402-534 186-335 (338)
69 3ulq_A Response regulator aspa 99.2 3.5E-10 1.2E-14 117.6 21.0 164 369-532 185-369 (383)
70 4e6h_A MRNA 3'-END-processing 99.2 6.3E-09 2.1E-13 114.4 31.5 436 109-567 47-572 (679)
71 3ulq_A Response regulator aspa 99.2 3E-11 1E-15 125.7 12.4 224 341-565 111-368 (383)
72 3nf1_A KLC 1, kinesin light ch 99.2 9.9E-12 3.4E-16 124.9 7.4 238 296-564 26-306 (311)
73 3as5_A MAMA; tetratricopeptide 99.2 6.9E-10 2.4E-14 101.6 18.8 167 369-538 9-180 (186)
74 4abn_A Tetratricopeptide repea 99.2 1.7E-10 5.8E-15 123.3 16.0 178 384-566 84-288 (474)
75 4i17_A Hypothetical protein; T 99.2 4.1E-10 1.4E-14 107.6 17.1 202 333-546 7-224 (228)
76 2ond_A Cleavage stimulation fa 99.2 5.5E-09 1.9E-13 104.8 25.9 209 248-462 34-269 (308)
77 3as5_A MAMA; tetratricopeptide 99.2 2.3E-10 7.9E-15 104.8 14.5 163 401-566 10-174 (186)
78 3nf1_A KLC 1, kinesin light ch 99.2 2.3E-11 7.9E-16 122.2 8.3 242 262-534 23-310 (311)
79 4i17_A Hypothetical protein; T 99.2 4.7E-10 1.6E-14 107.2 16.0 187 367-565 6-209 (228)
80 1hz4_A MALT regulatory protein 99.2 5.4E-09 1.9E-13 108.1 24.6 195 371-565 96-322 (373)
81 3q15_A PSP28, response regulat 99.1 2.2E-09 7.5E-14 111.3 16.4 221 343-564 111-364 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.1 8.2E-10 2.8E-14 122.9 13.8 163 367-534 8-177 (723)
83 1qqe_A Vesicular transport pro 99.0 1.1E-09 3.6E-14 109.1 12.8 200 348-562 32-266 (292)
84 3q15_A PSP28, response regulat 99.0 5.1E-08 1.7E-12 100.9 25.8 229 304-532 108-366 (378)
85 1hz4_A MALT regulatory protein 99.0 1E-07 3.6E-12 98.3 26.2 192 269-461 96-320 (373)
86 3edt_B KLC 2, kinesin light ch 99.0 1.5E-09 5.2E-14 106.9 10.8 198 367-564 42-280 (283)
87 1qqe_A Vesicular transport pro 99.0 5.2E-09 1.8E-13 104.1 14.7 212 281-536 32-274 (292)
88 3qky_A Outer membrane assembly 99.0 8.1E-09 2.8E-13 100.8 15.8 204 367-611 14-247 (261)
89 4ga2_A E3 SUMO-protein ligase 98.9 8.4E-10 2.9E-14 97.5 6.6 138 409-551 7-149 (150)
90 3qky_A Outer membrane assembly 98.9 1.3E-08 4.5E-13 99.3 14.3 200 332-553 14-249 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 6.2E-08 2.1E-12 94.5 18.0 175 387-566 85-283 (310)
92 2fo7_A Synthetic consensus TPR 98.9 4.4E-08 1.5E-12 83.9 15.1 130 401-533 3-134 (136)
93 2yhc_A BAMD, UPF0169 lipoprote 98.9 5E-08 1.7E-12 92.7 16.0 179 369-567 5-215 (225)
94 4ga2_A E3 SUMO-protein ligase 98.9 8.3E-09 2.8E-13 91.0 9.6 123 440-565 3-129 (150)
95 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.7E-13 114.5 12.8 169 379-553 402-585 (681)
96 3edt_B KLC 2, kinesin light ch 98.8 6.3E-08 2.2E-12 95.2 17.0 164 368-531 85-281 (283)
97 3qou_A Protein YBBN; thioredox 98.8 3E-08 1E-12 98.2 14.4 162 397-563 115-282 (287)
98 2fo7_A Synthetic consensus TPR 98.8 2.8E-08 9.6E-13 85.1 12.5 129 436-566 3-133 (136)
99 3mv2_B Coatomer subunit epsilo 98.8 2.2E-07 7.5E-12 90.7 17.6 179 352-538 85-289 (310)
100 2r5s_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 89.6 11.3 76 489-564 93-172 (176)
101 3rjv_A Putative SEL1 repeat pr 98.8 2.1E-07 7.3E-12 87.3 16.5 162 397-567 16-199 (212)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4E-12 95.0 15.5 219 310-557 4-253 (307)
103 3urz_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 87.9 14.2 125 405-535 60-190 (208)
104 2pzi_A Probable serine/threoni 98.7 1.6E-07 5.3E-12 105.1 16.4 188 344-538 402-609 (681)
105 3gyz_A Chaperone protein IPGC; 98.7 3.7E-08 1.3E-12 86.5 8.9 102 465-566 30-134 (151)
106 2vsy_A XCC0866; transferase, g 98.7 9.3E-08 3.2E-12 104.9 14.3 158 381-543 2-169 (568)
107 2vgx_A Chaperone SYCD; alterna 98.7 3.4E-08 1.2E-12 86.8 7.9 100 466-565 16-118 (148)
108 2vsy_A XCC0866; transferase, g 98.7 2.1E-07 7.3E-12 102.0 15.7 145 346-496 2-154 (568)
109 2ifu_A Gamma-SNAP; membrane fu 98.7 5.3E-08 1.8E-12 97.5 9.7 197 345-563 3-222 (307)
110 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 84.2 13.1 155 371-530 9-172 (176)
111 4gco_A Protein STI-1; structur 98.7 1.2E-07 4E-12 80.6 10.2 92 473-564 16-109 (126)
112 2yhc_A BAMD, UPF0169 lipoprote 98.6 4E-07 1.4E-11 86.4 14.5 183 335-538 6-220 (225)
113 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.6E-12 78.9 11.2 114 430-546 8-125 (126)
114 2uy1_A Cleavage stimulation fa 98.6 6.8E-06 2.3E-10 87.5 25.2 366 106-530 6-412 (493)
115 3qou_A Protein YBBN; thioredox 98.6 2E-06 6.7E-11 85.0 18.3 124 367-495 150-280 (287)
116 3dra_A Protein farnesyltransfe 98.6 4.4E-06 1.5E-10 82.3 20.2 178 383-564 84-286 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.6E-07 2.2E-11 83.9 13.9 126 402-565 9-150 (213)
118 3dra_A Protein farnesyltransfe 98.6 8.9E-06 3E-10 80.1 22.2 227 311-545 47-302 (306)
119 2xcb_A PCRH, regulatory protei 98.6 3.2E-07 1.1E-11 79.9 10.4 95 471-565 19-115 (142)
120 3u3w_A Transcriptional activat 98.6 2.7E-06 9.4E-11 84.3 18.6 161 404-564 80-265 (293)
121 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.8E-12 93.0 9.0 191 367-565 3-199 (281)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 8.3E-07 2.8E-11 88.1 14.7 163 402-564 78-265 (293)
123 3urz_A Uncharacterized protein 98.5 7.2E-07 2.5E-11 83.4 13.4 185 300-510 7-198 (208)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.7E-06 9.4E-11 79.6 17.0 145 371-535 9-154 (213)
125 3rjv_A Putative SEL1 repeat pr 98.5 3.3E-06 1.1E-10 79.1 15.7 173 351-533 4-199 (212)
126 2uy1_A Cleavage stimulation fa 98.5 1.6E-05 5.6E-10 84.6 22.8 98 145-258 11-117 (493)
127 1na0_A Designed protein CTPR3; 98.4 1.4E-06 4.8E-11 73.2 11.4 114 435-550 10-125 (125)
128 3upv_A Heat shock protein STI1 98.4 9.5E-07 3.3E-11 74.9 10.0 94 472-565 6-101 (126)
129 1a17_A Serine/threonine protei 98.4 1.5E-06 5.1E-11 77.5 11.7 125 437-564 16-145 (166)
130 1p5q_A FKBP52, FK506-binding p 98.4 8.8E-07 3E-11 89.7 11.2 94 471-564 197-293 (336)
131 2vyi_A SGTA protein; chaperone 98.4 1.5E-06 5.1E-11 73.7 11.1 116 436-553 14-131 (131)
132 2qfc_A PLCR protein; TPR, HTH, 98.4 3.7E-06 1.3E-10 83.3 14.9 162 370-531 77-266 (293)
133 4f3v_A ESX-1 secretion system 98.4 5.4E-07 1.9E-11 86.7 8.4 138 403-545 106-250 (282)
134 3gyz_A Chaperone protein IPGC; 98.4 1.4E-06 4.7E-11 76.4 10.2 104 430-536 31-138 (151)
135 2lni_A Stress-induced-phosphop 98.4 1.5E-06 5E-11 74.1 10.0 80 472-551 52-133 (133)
136 2kck_A TPR repeat; tetratricop 98.4 1.8E-06 6.3E-11 70.8 9.8 98 470-567 6-108 (112)
137 4f3v_A ESX-1 secretion system 98.4 6.8E-07 2.3E-11 86.0 7.9 181 380-565 18-237 (282)
138 2vgx_A Chaperone SYCD; alterna 98.3 8.8E-07 3E-11 77.6 7.5 113 422-539 10-126 (148)
139 1wao_1 Serine/threonine protei 98.3 2.8E-06 9.5E-11 90.4 12.8 116 443-561 15-135 (477)
140 1hxi_A PEX5, peroxisome target 98.3 9.3E-07 3.2E-11 74.4 7.3 95 471-565 18-114 (121)
141 3u3w_A Transcriptional activat 98.3 3.5E-05 1.2E-09 76.2 19.9 158 374-531 81-266 (293)
142 2e2e_A Formate-dependent nitri 98.3 8.3E-07 2.8E-11 80.5 7.3 95 471-565 45-144 (177)
143 2e2e_A Formate-dependent nitri 98.3 4E-06 1.4E-10 75.9 11.1 126 410-539 21-152 (177)
144 3gw4_A Uncharacterized protein 98.3 7.4E-06 2.5E-10 75.8 13.0 151 380-530 4-175 (203)
145 3q49_B STIP1 homology and U bo 98.3 3.1E-06 1.1E-10 72.7 9.5 97 469-565 8-106 (137)
146 1wao_1 Serine/threonine protei 98.3 9.4E-06 3.2E-10 86.3 14.7 113 409-526 16-134 (477)
147 1elw_A TPR1-domain of HOP; HOP 98.2 6.8E-06 2.3E-10 68.0 10.9 89 475-563 9-99 (118)
148 3sz7_A HSC70 cochaperone (SGT) 98.2 2.1E-06 7.4E-11 76.6 8.2 94 472-565 13-108 (164)
149 4gcn_A Protein STI-1; structur 98.2 1.8E-06 6.1E-11 73.3 7.2 94 472-565 10-112 (127)
150 3gw4_A Uncharacterized protein 98.2 1.3E-05 4.6E-10 74.0 13.6 154 410-565 3-176 (203)
151 1na0_A Designed protein CTPR3; 98.2 1E-05 3.4E-10 67.8 11.6 96 470-565 9-106 (125)
152 2dba_A Smooth muscle cell asso 98.2 1E-05 3.4E-10 70.4 11.9 103 435-540 29-137 (148)
153 2lni_A Stress-induced-phosphop 98.2 6.8E-06 2.3E-10 69.9 10.4 97 469-565 15-113 (133)
154 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.7E-10 69.5 12.6 93 399-496 28-125 (148)
155 1elw_A TPR1-domain of HOP; HOP 98.2 1.2E-05 4.2E-10 66.4 11.4 106 437-545 7-115 (118)
156 2xcb_A PCRH, regulatory protei 98.2 2.3E-06 8E-11 74.3 7.0 104 436-542 20-126 (142)
157 3rkv_A Putative peptidylprolyl 98.2 5.5E-06 1.9E-10 73.7 9.3 64 502-565 63-126 (162)
158 1a17_A Serine/threonine protei 98.2 1.7E-05 5.7E-10 70.5 12.5 125 402-530 16-145 (166)
159 2fbn_A 70 kDa peptidylprolyl i 98.2 7.8E-06 2.7E-10 75.5 10.5 169 375-564 11-185 (198)
160 2vyi_A SGTA protein; chaperone 98.2 8.3E-06 2.8E-10 68.9 9.9 97 469-565 11-109 (131)
161 2hr2_A Hypothetical protein; a 98.1 3.4E-06 1.2E-10 73.1 6.9 62 504-565 59-131 (159)
162 3dss_A Geranylgeranyl transfer 98.1 0.00013 4.5E-09 72.2 19.1 225 309-542 41-315 (331)
163 2c2l_A CHIP, carboxy terminus 98.1 2.9E-05 1E-09 76.2 13.8 88 240-332 14-104 (281)
164 3sz7_A HSC70 cochaperone (SGT) 98.1 1.6E-05 5.6E-10 70.7 10.5 106 435-543 12-120 (164)
165 3upv_A Heat shock protein STI1 98.1 1.4E-05 4.7E-10 67.6 9.4 105 437-544 7-120 (126)
166 3q7a_A Farnesyltransferase alp 98.1 0.00053 1.8E-08 68.2 22.0 151 306-461 63-235 (349)
167 3q7a_A Farnesyltransferase alp 98.1 0.00013 4.6E-09 72.5 17.6 212 348-565 69-331 (349)
168 2xev_A YBGF; tetratricopeptide 98.1 7.5E-06 2.6E-10 69.4 7.2 91 475-565 7-105 (129)
169 1elr_A TPR2A-domain of HOP; HO 98.0 2E-05 7E-10 66.5 9.7 95 471-565 5-108 (131)
170 3k9i_A BH0479 protein; putativ 98.0 2.2E-06 7.4E-11 71.6 3.0 83 483-565 3-90 (117)
171 2hr2_A Hypothetical protein; a 98.0 1.3E-05 4.3E-10 69.6 7.8 71 472-542 59-142 (159)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3E-05 1E-09 82.0 12.2 94 471-564 318-414 (457)
173 2kck_A TPR repeat; tetratricop 98.0 2.5E-05 8.5E-10 63.8 9.3 96 439-536 11-111 (112)
174 1hxi_A PEX5, peroxisome target 98.0 2.5E-05 8.6E-10 65.4 9.0 92 442-536 25-119 (121)
175 2fbn_A 70 kDa peptidylprolyl i 98.0 4.7E-05 1.6E-09 70.2 11.7 94 472-565 40-151 (198)
176 1p5q_A FKBP52, FK506-binding p 98.0 4.6E-05 1.6E-09 76.9 12.5 125 401-530 149-293 (336)
177 3dss_A Geranylgeranyl transfer 98.0 0.00033 1.1E-08 69.3 18.2 211 350-565 47-304 (331)
178 2xev_A YBGF; tetratricopeptide 98.0 6.3E-05 2.2E-09 63.5 11.2 95 443-540 11-114 (129)
179 3q49_B STIP1 homology and U bo 98.0 2.5E-05 8.7E-10 66.8 8.8 100 433-535 8-110 (137)
180 4b4t_Q 26S proteasome regulato 97.9 6.4E-05 2.2E-09 78.9 13.6 163 402-564 58-244 (434)
181 1dce_A Protein (RAB geranylger 97.9 0.00026 9E-09 76.6 18.2 168 382-554 43-244 (567)
182 3ro3_A PINS homolog, G-protein 97.9 3.6E-05 1.2E-09 67.7 9.6 93 472-564 51-157 (164)
183 4gcn_A Protein STI-1; structur 97.9 4.4E-05 1.5E-09 64.5 9.6 100 402-506 11-120 (127)
184 2if4_A ATFKBP42; FKBP-like, al 97.9 2.2E-05 7.4E-10 79.4 8.9 146 400-565 180-328 (338)
185 1elr_A TPR2A-domain of HOP; HO 97.9 2.1E-05 7E-10 66.5 7.1 112 401-545 6-121 (131)
186 1ihg_A Cyclophilin 40; ppiase 97.9 4.1E-05 1.4E-09 78.3 10.2 134 402-557 226-362 (370)
187 3n71_A Histone lysine methyltr 97.9 5E-05 1.7E-09 80.2 10.7 125 444-568 319-467 (490)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 3.1E-05 1.1E-09 78.3 8.6 151 368-536 179-333 (338)
189 3k9i_A BH0479 protein; putativ 97.8 2.3E-05 7.9E-10 65.2 5.5 69 471-539 28-98 (117)
190 4b4t_Q 26S proteasome regulato 97.8 0.00041 1.4E-08 72.6 16.6 121 376-496 103-242 (434)
191 3ro3_A PINS homolog, G-protein 97.8 7.8E-05 2.7E-09 65.5 9.3 131 402-532 12-159 (164)
192 2l6j_A TPR repeat-containing p 97.8 3.2E-05 1.1E-09 63.2 6.3 90 470-559 4-101 (111)
193 1ihg_A Cyclophilin 40; ppiase 97.8 8.2E-05 2.8E-09 76.0 10.0 112 435-565 224-336 (370)
194 3ma5_A Tetratricopeptide repea 97.7 6.3E-05 2.1E-09 60.4 7.0 65 501-565 6-70 (100)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00016 5.6E-09 76.3 12.0 65 502-566 317-381 (457)
196 3rkv_A Putative peptidylprolyl 97.7 6.2E-05 2.1E-09 66.8 7.5 74 471-544 64-140 (162)
197 1na3_A Designed protein CTPR2; 97.6 0.00012 4.1E-09 57.2 7.3 80 471-550 10-91 (91)
198 2kat_A Uncharacterized protein 97.6 7.5E-05 2.6E-09 61.7 5.7 77 489-565 4-82 (115)
199 1zu2_A Mitochondrial import re 97.5 3.3E-05 1.1E-09 66.8 2.9 85 482-566 14-121 (158)
200 1zu2_A Mitochondrial import re 97.5 8.1E-05 2.8E-09 64.4 4.2 100 410-537 13-126 (158)
201 3bee_A Putative YFRE protein; 97.4 0.00034 1.2E-08 55.0 7.2 69 499-567 3-74 (93)
202 3n71_A Histone lysine methyltr 97.3 0.00017 5.7E-09 76.2 5.7 114 479-610 318-449 (490)
203 2l6j_A TPR repeat-containing p 97.3 0.00032 1.1E-08 57.1 6.1 67 500-566 2-68 (111)
204 1klx_A Cysteine rich protein B 97.3 0.0011 3.7E-08 56.8 9.5 110 413-531 9-126 (138)
205 3qwp_A SET and MYND domain-con 97.3 0.00022 7.4E-09 74.1 5.4 115 478-610 295-427 (429)
206 1dce_A Protein (RAB geranylger 97.2 0.0026 8.8E-08 68.8 13.9 149 413-566 43-222 (567)
207 3ly7_A Transcriptional activat 97.2 0.0033 1.1E-07 62.4 13.4 140 395-536 190-344 (372)
208 1na3_A Designed protein CTPR2; 97.2 0.0013 4.3E-08 51.1 8.2 64 502-565 9-72 (91)
209 1klx_A Cysteine rich protein B 97.2 0.0014 4.7E-08 56.1 8.9 113 447-567 8-128 (138)
210 3qww_A SET and MYND domain-con 97.1 0.00022 7.5E-09 73.9 3.0 83 483-565 311-411 (433)
211 3ma5_A Tetratricopeptide repea 96.9 0.0039 1.3E-07 49.6 8.3 63 398-462 6-69 (100)
212 3qww_A SET and MYND domain-con 96.8 0.004 1.4E-07 64.5 10.2 94 446-539 310-424 (433)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.043 1.5E-06 62.4 19.5 114 275-424 661-774 (814)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0025 8.7E-08 50.4 6.5 64 476-539 6-72 (99)
215 1pc2_A Mitochondria fission pr 96.8 0.0048 1.6E-07 52.6 8.3 90 500-615 30-124 (152)
216 2kat_A Uncharacterized protein 96.7 0.0054 1.8E-07 50.2 8.3 58 402-461 22-80 (115)
217 2kc7_A BFR218_protein; tetratr 96.6 0.0051 1.7E-07 48.6 7.2 87 440-537 6-96 (99)
218 3qwp_A SET and MYND domain-con 96.6 0.0087 3E-07 62.0 10.6 69 472-540 331-414 (429)
219 3lvg_A Clathrin heavy chain 1; 96.6 0.0012 4.1E-08 66.7 3.8 238 163-420 53-325 (624)
220 1wy6_A Hypothetical protein ST 96.4 0.12 4E-06 42.3 13.5 139 411-568 19-157 (172)
221 3lvg_A Clathrin heavy chain 1; 96.4 0.0014 4.8E-08 66.3 2.7 433 62-558 53-534 (624)
222 3u64_A Protein TP_0956; tetrat 96.3 0.0085 2.9E-07 57.0 7.5 87 486-572 179-276 (301)
223 3ly7_A Transcriptional activat 96.0 0.042 1.4E-06 54.5 11.3 134 430-567 190-341 (372)
224 3mkq_A Coatomer beta'-subunit; 95.9 0.26 8.8E-06 55.9 19.4 101 378-496 662-762 (814)
225 3bee_A Putative YFRE protein; 95.6 0.036 1.2E-06 43.2 7.2 68 468-535 4-76 (93)
226 1pc2_A Mitochondria fission pr 95.4 0.12 4.1E-06 44.0 10.2 91 416-539 15-108 (152)
227 2v5f_A Prolyl 4-hydroxylase su 95.3 0.053 1.8E-06 43.3 7.5 69 474-542 9-86 (104)
228 3mkq_B Coatomer subunit alpha; 95.0 0.84 2.9E-05 39.8 14.7 103 274-394 13-115 (177)
229 1qsa_A Protein (soluble lytic 94.9 5 0.00017 43.2 25.8 268 251-530 57-347 (618)
230 3mkq_B Coatomer subunit alpha; 94.9 0.5 1.7E-05 41.3 12.8 128 377-528 14-141 (177)
231 1nzn_A CGI-135 protein, fissio 94.7 0.092 3.2E-06 43.0 7.2 26 510-535 82-107 (126)
232 1y8m_A FIS1; mitochondria, unk 93.9 0.66 2.2E-05 38.6 10.8 67 499-565 36-106 (144)
233 3u64_A Protein TP_0956; tetrat 93.6 0.68 2.3E-05 44.0 11.9 112 380-496 133-266 (301)
234 4gns_B Protein CSD3, chitin bi 93.0 0.18 6E-06 55.5 7.7 54 510-563 345-398 (754)
235 1nzn_A CGI-135 protein, fissio 92.6 0.68 2.3E-05 37.8 8.8 86 413-501 15-106 (126)
236 2v5f_A Prolyl 4-hydroxylase su 92.2 0.69 2.3E-05 36.6 8.6 65 501-565 4-75 (104)
237 1wy6_A Hypothetical protein ST 89.9 7.3 0.00025 32.0 12.9 63 402-466 94-156 (172)
238 3o48_A Mitochondria fission 1 89.0 0.92 3.1E-05 37.2 6.4 44 520-563 61-105 (134)
239 4ady_A RPN2, 26S proteasome re 88.9 35 0.0012 38.4 24.9 266 240-511 384-670 (963)
240 4h7y_A Dual specificity protei 88.4 3.1 0.00011 34.9 9.2 107 395-536 9-128 (161)
241 4b4t_P 26S proteasome regulato 87.7 20 0.00068 36.8 17.3 147 108-256 30-203 (445)
242 4ady_A RPN2, 26S proteasome re 87.6 41 0.0014 37.8 27.2 248 275-529 383-656 (963)
243 3lpz_A GET4 (YOR164C homolog); 87.6 22 0.00074 34.6 20.9 138 65-213 37-185 (336)
244 2wpv_A GET4, UPF0363 protein Y 86.9 23 0.00078 34.2 20.4 139 167-316 36-187 (312)
245 2p58_C Putative type III secre 85.8 8.5 0.00029 29.5 9.4 86 349-439 23-108 (116)
246 2uwj_G Type III export protein 85.2 8 0.00027 29.6 9.0 86 349-439 22-107 (115)
247 2wpv_A GET4, UPF0363 protein Y 84.2 31 0.0011 33.2 19.4 169 268-463 35-217 (312)
248 2qx5_A Nucleoporin NIC96; mRNA 83.9 36 0.0012 36.7 17.3 44 96-141 155-198 (661)
249 3lpz_A GET4 (YOR164C homolog); 81.9 39 0.0013 32.8 22.0 134 167-311 38-181 (336)
250 4h7y_A Dual specificity protei 81.6 11 0.00036 31.8 9.3 65 107-172 73-137 (161)
251 3ffl_A Anaphase-promoting comp 81.1 8.5 0.00029 33.0 8.8 26 436-461 65-90 (167)
252 1v54_E Cytochrome C oxidase po 80.5 9 0.00031 29.6 7.8 62 415-478 26-87 (109)
253 4gns_B Protein CSD3, chitin bi 80.4 6.3 0.00022 43.3 9.9 53 239-293 346-398 (754)
254 3ffl_A Anaphase-promoting comp 80.3 11 0.00038 32.3 9.3 69 428-496 12-89 (167)
255 4fhn_B Nucleoporin NUP120; pro 78.1 23 0.00079 41.5 14.6 166 269-453 815-990 (1139)
256 2ff4_A Probable regulatory pro 77.4 13 0.00043 37.5 10.7 67 405-472 177-247 (388)
257 2uwj_G Type III export protein 77.0 16 0.00055 28.0 8.1 80 142-225 19-98 (115)
258 1y8m_A FIS1; mitochondria, unk 76.5 11 0.00037 31.4 7.9 32 507-538 82-113 (144)
259 2p58_C Putative type III secre 75.9 25 0.00085 27.0 9.5 76 245-325 22-97 (116)
260 1v54_E Cytochrome C oxidase po 75.7 15 0.00052 28.3 7.8 62 109-171 25-86 (109)
261 1qsa_A Protein (soluble lytic 75.3 92 0.0032 33.4 37.2 306 6-325 17-347 (618)
262 2qx5_A Nucleoporin NIC96; mRNA 75.2 32 0.0011 37.2 13.4 42 166-208 155-199 (661)
263 2ff4_A Probable regulatory pro 74.9 4.4 0.00015 41.0 6.4 66 506-571 175-245 (388)
264 4fhn_B Nucleoporin NUP120; pro 73.7 50 0.0017 38.7 15.8 142 338-487 817-988 (1139)
265 3o48_A Mitochondria fission 1 72.2 24 0.00083 28.9 8.8 34 505-538 81-114 (134)
266 2y69_E Cytochrome C oxidase su 69.2 26 0.00088 28.7 8.1 61 416-478 70-130 (152)
267 1zbp_A Hypothetical protein VP 68.8 51 0.0017 30.8 11.4 122 408-537 6-135 (273)
268 3mv2_A Coatomer subunit alpha; 67.8 45 0.0015 32.0 11.1 60 493-566 196-257 (325)
269 3ltj_A Alpharep-4; protein eng 65.3 70 0.0024 28.0 17.7 49 264-312 26-74 (201)
270 4b4t_P 26S proteasome regulato 64.8 1.3E+02 0.0043 30.7 20.4 94 403-496 141-244 (445)
271 3txn_A 26S proteasome regulato 64.3 1.2E+02 0.0041 30.3 15.1 58 439-496 104-165 (394)
272 2y69_E Cytochrome C oxidase su 63.9 33 0.0011 28.1 7.8 62 110-172 69-130 (152)
273 3txn_A 26S proteasome regulato 60.7 1.4E+02 0.0048 29.8 15.9 92 373-464 104-211 (394)
274 3ltm_A Alpha-REP4; protein eng 59.4 93 0.0032 27.4 17.5 17 367-383 125-141 (211)
275 1zbp_A Hypothetical protein VP 58.1 10 0.00034 35.5 4.5 58 478-535 5-64 (273)
276 1wdy_A 2-5A-dependent ribonucl 57.4 1.2E+02 0.0041 28.0 14.9 49 344-392 190-240 (285)
277 3eiq_C Programmed cell death p 53.4 1.3E+02 0.0044 29.5 11.9 242 66-362 57-321 (358)
278 3ltj_A Alpharep-4; protein eng 52.5 1.2E+02 0.004 26.4 17.6 111 61-179 26-136 (201)
279 4b4t_R RPN7, 26S proteasome re 51.7 49 0.0017 33.7 9.1 57 370-426 133-195 (429)
280 3esl_A Checkpoint serine/threo 51.6 1.3E+02 0.0044 26.6 11.3 102 488-615 62-169 (202)
281 1n11_A Ankyrin; clathrin, BAND 49.1 2.2E+02 0.0074 28.5 17.3 111 71-190 19-136 (437)
282 2l0z_A Glycoprotein G2; zinc-b 46.7 6.1 0.00021 24.2 0.7 17 688-704 12-29 (42)
283 3hra_A Ankyrin repeat family p 46.5 1.2E+02 0.004 26.3 10.0 150 73-230 12-173 (201)
284 4b4t_R RPN7, 26S proteasome re 45.6 62 0.0021 32.9 8.7 95 96-190 133-234 (429)
285 4b4t_S RPN3, 26S proteasome re 45.5 1.6E+02 0.0054 30.6 11.4 61 164-224 231-299 (523)
286 3esl_A Checkpoint serine/threo 41.7 1E+02 0.0035 27.3 8.1 61 349-409 95-156 (202)
287 2nsz_A Programmed cell death p 40.9 1E+02 0.0035 25.0 7.6 65 167-231 10-79 (129)
288 1k1a_A B-cell lymphoma 3-encod 40.2 2E+02 0.0068 25.6 11.8 24 206-229 17-40 (241)
289 1k1a_A B-cell lymphoma 3-encod 39.9 1.6E+02 0.0054 26.3 10.1 84 103-190 15-102 (241)
290 2nsz_A Programmed cell death p 38.2 1.2E+02 0.0041 24.6 7.7 63 371-433 10-77 (129)
291 3ltm_A Alpha-REP4; protein eng 36.2 2.2E+02 0.0074 24.8 17.2 80 61-144 31-110 (211)
292 3kea_A K1L; tropism, ANK repea 35.1 1.4E+02 0.0049 27.8 9.1 91 475-569 131-221 (285)
293 4a1g_A Mitotic checkpoint seri 33.9 1.5E+02 0.0053 24.8 7.7 52 352-403 84-136 (152)
294 1wdy_A 2-5A-dependent ribonucl 32.9 2.8E+02 0.0097 25.2 13.7 19 273-291 9-27 (285)
295 4a1g_A Mitotic checkpoint seri 32.8 74 0.0025 26.7 5.6 48 81-128 83-135 (152)
296 3bqo_A Telomeric repeat-bindin 31.7 1.9E+02 0.0064 25.4 7.8 58 486-543 94-158 (211)
297 2d2s_A Exocyst complex compone 31.4 1.4E+02 0.0047 27.3 7.7 29 467-495 88-116 (235)
298 3jxi_A Vanilloid receptor-rela 31.1 1.1E+02 0.0037 28.0 7.3 89 103-191 11-117 (260)
299 3jxi_A Vanilloid receptor-rela 30.8 1.6E+02 0.0056 26.7 8.6 53 204-256 11-72 (260)
300 3mkr_B Coatomer subunit alpha; 30.2 1.4E+02 0.0049 28.6 7.7 61 492-566 186-248 (320)
301 2r9g_A AAA ATPase, central reg 30.0 2.9E+02 0.0098 24.4 9.5 45 404-449 16-63 (204)
302 1oyz_A Hypothetical protein YI 29.9 3.3E+02 0.011 25.0 18.8 239 263-514 34-279 (280)
303 3eu9_A Huntingtin-interacting 29.4 2.1E+02 0.0073 25.2 9.0 14 175-188 117-130 (240)
304 1n11_A Ankyrin; clathrin, BAND 29.4 4.3E+02 0.015 26.2 13.6 134 49-191 28-170 (437)
305 2ion_A PDCD4, programmed cell 28.6 1.2E+02 0.0041 25.4 6.3 62 371-432 12-78 (152)
306 2wvi_A Mitotic checkpoint seri 28.0 2.1E+02 0.007 24.4 7.6 77 487-569 47-129 (164)
307 2zu6_B Programmed cell death p 27.7 4E+02 0.014 25.3 11.4 193 269-463 6-231 (307)
308 2ion_A PDCD4, programmed cell 27.5 1.2E+02 0.0041 25.5 6.1 64 167-230 12-80 (152)
309 2rfa_A Transient receptor pote 27.3 3.2E+02 0.011 24.0 10.7 151 71-228 8-184 (232)
310 3hra_A Ankyrin repeat family p 26.8 2.2E+02 0.0075 24.4 8.4 147 6-163 13-172 (201)
311 2d2s_A Exocyst complex compone 26.1 2E+02 0.0068 26.2 7.8 23 100-122 24-46 (235)
312 3e3v_A Regulatory protein RECX 26.0 2.8E+02 0.0097 23.8 8.5 30 350-379 50-79 (177)
313 2r9g_A AAA ATPase, central reg 26.0 3E+02 0.01 24.3 8.2 63 97-160 14-84 (204)
314 2hgo_A CASSIICOLIN; toxin, dis 25.5 13 0.00045 19.6 -0.2 14 692-705 7-22 (27)
315 3kea_A K1L; tropism, ANK repea 24.6 2.9E+02 0.0099 25.6 9.2 16 174-189 136-151 (285)
316 2wvi_A Mitotic checkpoint seri 24.5 2.7E+02 0.0091 23.7 7.6 31 402-432 99-129 (164)
317 3ygs_P Procaspase 9; apoptosis 24.3 67 0.0023 24.5 3.6 39 77-115 51-89 (97)
318 4b4t_S RPN3, 26S proteasome re 24.3 1.8E+02 0.006 30.2 7.7 58 435-496 232-296 (523)
319 3ljn_A Hypothetical protein; a 23.6 2.1E+02 0.0071 27.8 8.2 49 71-119 58-106 (364)
320 2lo3_A SAGA-associated factor 23.5 29 0.00099 21.5 1.0 10 661-670 16-25 (44)
321 4gq2_M Nucleoporin NUP120; bet 23.3 6.2E+02 0.021 28.7 12.9 127 272-413 816-950 (950)
322 3bge_A Predicted ATPase; struc 23.3 3.1E+02 0.011 24.1 7.8 44 405-448 10-56 (201)
323 3ygs_P Procaspase 9; apoptosis 22.1 93 0.0032 23.7 4.0 38 382-419 51-88 (97)
324 3ctd_A Putative ATPase, AAA fa 21.4 4.3E+02 0.015 23.4 8.5 48 402-449 35-85 (213)
325 2fe3_A Peroxide operon regulat 20.4 2.2E+02 0.0076 23.4 6.5 63 423-487 11-73 (145)
326 4aez_C MAD3, mitotic spindle c 20.1 1.2E+02 0.0042 27.2 4.9 93 11-106 100-193 (223)
327 1qc6_A EVH1 domain from ENA/VA 20.1 34 0.0012 28.0 1.2 40 653-700 44-87 (130)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-43 Score=389.72 Aligned_cols=481 Identities=10% Similarity=-0.028 Sum_probs=399.5
Q ss_pred HHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHH
Q 005268 71 HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLL 150 (705)
Q Consensus 71 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (705)
..+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3466788899999999999999999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCC-------------------CeehHHHHHHHHHcCCCh
Q 005268 151 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-------------------DVVSWNSIIAAYEQSNDP 211 (705)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~ 211 (705)
+++.+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987653 678999999999999999999999999965433 478999999999999999
Q ss_pred hhHHHHHHHHHHCCCCCChhh-HHHHHHHHHccCChhhHHHH----HHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 005268 212 ITAHGFFTTMQQAGIQPDLLT-LVSLTSIVAQLNDCRNSRSV----HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286 (705)
Q Consensus 212 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i----~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~ 286 (705)
++|++.|++|.+.+ |+..+ +..+...+.. ........+ +..+...+ ......+++.++.+|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLL-TADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCS-CHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcc-cchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999999998853 54443 3333322222 211111111 33344444 4555667888899999999999999
Q ss_pred HHHhcCCC--CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhC
Q 005268 287 AVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363 (705)
Q Consensus 287 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 363 (705)
++|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+ ..| +..++..++.++...|++++|..+++.+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 99999987 7999999999999999999999999999987 334 67788999999999999999999999998763
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 440 (705)
+.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..+
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 5678899999999999999999999999875 4567789999999999999999999999999853 4477899999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHH
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD--ASIWGALLGA 511 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~ 511 (705)
+.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999864 2336789999999999999999999999988 44777 7899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=361.93 Aligned_cols=477 Identities=9% Similarity=0.004 Sum_probs=303.0
Q ss_pred CCccchHHHHHHhcCCch---HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhHHHHHhccC--CCCCcchHHHHHHH
Q 005268 29 PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDM--PVRDSGSWNAMISG 103 (705)
Q Consensus 29 p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~ 103 (705)
++...|+.+++.+.+.++ |..++..+.+. .|+..++..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 455667777776655554 66667666643 356667777777777777777777777776 35667777777777
Q ss_pred HHhCCChhHHHHHHHHHHH-C--------------CCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHH
Q 005268 104 YCQSGNAVEALDILDEMRL-E--------------GVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 168 (705)
Q Consensus 104 ~~~~g~~~~A~~~~~~m~~-~--------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 168 (705)
|.+.|++++|+++|+++.. . +.+++..+|+.++.++.+.|++++|.++|+.+++.++. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 7777777777777774321 1 22334667777777777777777777777777776432 444455
Q ss_pred HHHHHHHccCCHHHHHHH---HhccCCC----CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 005268 169 NLINMYAKFGMMRHALRV---FDQMMER----DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA 241 (705)
Q Consensus 169 ~Li~~y~~~g~~~~A~~~---f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 241 (705)
.+...+...+..+.+... |+.+... +..+|+.++..|.+.|++++|.++|++|.+. +++..++..+..++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 554444333222221110 2222211 2234555566666666666666666666442 233333333333333
Q ss_pred ccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 005268 242 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQ 321 (705)
Q Consensus 242 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (705)
..|++++|..++..+.+.+ +. +..+|+.++.+|.+.|++++|.++|+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID--PY-------------------------------NLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TT-------------------------------CCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC--cc-------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333333333333333322 22 33334444444444444444444444
Q ss_pred hhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CC
Q 005268 322 MMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RS 397 (705)
Q Consensus 322 ~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~ 397 (705)
++.+ ..| +..++..+...|.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.
T Consensus 364 ~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 364 DLVD---RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHH---HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHh---hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4433 112 23333334444444444444444444444321 2345567777777777777777777777654 34
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCcCC--cch
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH--LKH 472 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 472 (705)
+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 66778888888888888888888888888753 3457788888889999999999999998887543 55776 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999887 2334 788999999999999999999999999999999999999999998854
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.8e-26 Score=237.33 Aligned_cols=370 Identities=14% Similarity=0.165 Sum_probs=263.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 005268 101 ISGYCQSGNAVEALDILDEMRLEGVSMD-PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179 (705)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 179 (705)
...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777777654 343 3344445555566777777777777766653 3356666777777777777
Q ss_pred HHHHHHHHhccCC--C-CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 005268 180 MRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 256 (705)
Q Consensus 180 ~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 256 (705)
+++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------------------------------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------
Confidence 7777777766532 2 3345666666666666666666666666543
Q ss_pred HHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCc
Q 005268 257 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 333 (705)
Q Consensus 257 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 333 (705)
.|.+...+..+...|.+.|++++|.+.|+++. +.+..+|+.+...|...|++++|+..|+++.+ +.|+
T Consensus 131 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~- 201 (388)
T 1w3b_A 131 -----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPN- 201 (388)
T ss_dssp -----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTT-
T ss_pred -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-
Confidence 23334445555555666666666666665543 23456677777777777777777777777665 3343
Q ss_pred ccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHH
Q 005268 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 410 (705)
Q Consensus 334 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 410 (705)
+...+..+...+...|++++|...|++.. +.+...|..+...|.
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 23345556666666777777777666554 344566788888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 489 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 489 (705)
..|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.+.|+.+.+. .+++...+..++..+.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999988 4554 568888888999999999999999998864 244677899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 490 HNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 490 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
.+.++++ ...| +..+|..+...+.+.|++++|...++++++++|+++..+..++.++...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999887 3445 477899999999999999999999999999999999999999998877663
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.7e-27 Score=252.97 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccC---------chHHHHHHHHHHHHhCCCCch
Q 005268 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG---------ALRQGIKIHARVIKNCLCFDV 368 (705)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~~ 368 (705)
..++.+|.+|++.|+.++|+++|++|.+ .|++||..||+++|.+|+..+ .++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 4578888999999999999999999998 899999999999999987654 367889999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 444 (705)
.+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999886 5788889999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhc
Q 005268 445 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 483 (705)
Q Consensus 445 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 483 (705)
++.|++++|.++|++|.+. |+.|+..+|+.+++.|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999876 9999999999999888754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.7e-25 Score=228.98 Aligned_cols=351 Identities=15% Similarity=0.095 Sum_probs=293.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC
Q 005268 202 IAAYEQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 280 (705)
Q Consensus 202 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g 280 (705)
...+.+.|++++|++.+.++.+. .|+.. .+..+...+...++++.+...+...++. .+.+...+..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCC
Confidence 34455667777777777666553 34433 3444445556667777777777776665 3777888999999999999
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcc-cccchhHHhhccCchHHHHHHH
Q 005268 281 IINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIH 356 (705)
Q Consensus 281 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~ 356 (705)
++++|...|+++. +.+..+|..+...+.+.|++++|++.|+++.+ ..|+.. .+..+...+...|++++|...+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999998764 44667899999999999999999999999988 667655 4556677788889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 357 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 357 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
..+++.. +.+..+++.+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcC
Confidence 9998874 4467889999999999999999999999886 44456699999999999999999999999998 4565
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHH
Q 005268 434 -HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALL 509 (705)
Q Consensus 434 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll 509 (705)
..++..+..++...|++++|.+.|+.+.+. .| +...|..++..|.+.|++++|.+.++++ . .+++..+|..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 578889999999999999999999999864 45 4678999999999999999999999988 2 345788999999
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998864
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.8e-27 Score=250.46 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCC---------hHHHHHHHHHHHHhCCCCchhHH
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN---------ILSGLLIHLYIVKHGLEFNLFVS 167 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~~ 167 (705)
++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHccCCHHHHHHHHhccCC----CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 005268 168 NNLINMYAKFGMMRHALRVFDQMME----RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL 243 (705)
Q Consensus 168 ~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 243 (705)
|+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 5555555555555555555555532 455555555555555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 005268 244 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK 278 (705)
Q Consensus 244 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~ 278 (705)
|+.++|.++++.|.+.| ..|+..+++.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 55555555555555555 55555555555555554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-22 Score=221.93 Aligned_cols=438 Identities=9% Similarity=-0.050 Sum_probs=242.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 005268 97 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 176 (705)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 176 (705)
|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|.+.+..+++.. +.+..++..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666543 555666666666666666666666666666554 2244555666666666
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 005268 177 FGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 253 (705)
Q Consensus 177 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 253 (705)
.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 6666666666655532 1222222333322222222222222222211111111111110000000000000000000
Q ss_pred HHHHHhc--------CCCchhHHHHHHHHHHHh---cCCHHHHHHHHhcCCC-----------------CChhHHHHHHH
Q 005268 254 GFIMRRG--------WFMEDVIIGNAVVDMYAK---LGIINSACAVFEGLPV-----------------KDVISWNTLIT 305 (705)
Q Consensus 254 ~~~~~~g--------~~~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li~ 305 (705)
..+.... .-+.+...+..+...+.. .|++++|...|+++.. .+..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0000000 002223344444444443 6777777777665432 12456666777
Q ss_pred HHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 005268 306 GYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 385 (705)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 385 (705)
.+...|++++|+..|+++.+ ..|+...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIE---LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 77777777777777777766 34445555666666777777777777777776653 335566777777777777777
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 386 DAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 386 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
+|...|+++. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777654 3445567777777777777777777777777642 22345677777777777777777777777765
Q ss_pred hhCCcCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 463 EFGIKPH----LKHYGCMVDLFGR---AGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 463 ~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
...-.++ ...+..++..|.+ .|++++|...++++ ...| +..+|..+...+...|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4222222 2267777777777 77777777777765 2223 466777777777777788788887777777777
Q ss_pred CCcchhhhh
Q 005268 534 ENVGYYVLM 542 (705)
Q Consensus 534 ~~~~~~~~l 542 (705)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 766555444
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.5e-22 Score=210.90 Aligned_cols=335 Identities=12% Similarity=0.107 Sum_probs=241.8
Q ss_pred CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 005268 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273 (705)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 273 (705)
+...|..+...|.+.|++++|+..|+++.+. .+.+..++..+..++...|+++.|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 3456777777788888888888888877654 12234455555555666666666666666665553 44455566666
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccC
Q 005268 274 DMYAKLGIINSACAVFEGLPVK---DV---ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 347 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 347 (705)
..|.+.|++++|...|+++... +. ..|..++..+...+. ..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL------------------------RSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH------------------------HHHHHHHHHcC
Confidence 6666666666666666554322 22 444444333111111 11122355567
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005268 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
+++.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. +.+...|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777776653 3467778888899999999999999998876 45677799999999999999999999999
Q ss_pred HHHcCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHhHHhhCCcCC-----cchHHHHHHHHHhcCCH
Q 005268 425 MLDEGVRPDHI-TFVSL------------LTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 425 m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~ 486 (705)
+.+ ..|+.. .+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++
T Consensus 237 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 997 456654 33333 77899999999999999999864 454 45789999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhh------------hhhhhcC--
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS------------NIYANVG-- 550 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 550 (705)
++|+..++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999987 3344 6889999999999999999999999999999999999999888 6787777
Q ss_pred ---CcchHHHHHHH
Q 005268 551 ---KWEGVDEVRSL 561 (705)
Q Consensus 551 ---~~~~a~~~~~~ 561 (705)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 44455655554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.8e-22 Score=216.60 Aligned_cols=428 Identities=8% Similarity=-0.059 Sum_probs=318.8
Q ss_pred hhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHH
Q 005268 130 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYE 206 (705)
Q Consensus 130 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 206 (705)
..+......+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345666677889999999999999999986 6889999999999999999999999998754 35568999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHH---HHHHHHHhcCCHH
Q 005268 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN---AVVDMYAKLGIIN 283 (705)
Q Consensus 207 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---~li~~y~~~g~~~ 283 (705)
+.|++++|+..|+++...+. ++......++..+..........+.+..+...+ ..++....+ .............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999988753 444444444444433322222222222111111 000000000 0000011111111
Q ss_pred HHHHHHhcCC----------CCChhHHHHHHHHHHH---cCChhHHHHHHHhhhh-----cCCC------CC-Ccccccc
Q 005268 284 SACAVFEGLP----------VKDVISWNTLITGYAQ---NGLASEAIEVFQMMEE-----CNEI------NP-NQGTYVS 338 (705)
Q Consensus 284 ~A~~~f~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~------~p-~~~t~~~ 338 (705)
.+...+.... ..+...|......+.. .|++++|+..|+++.+ .... .| +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222222221 1124455555555554 8999999999999876 1101 12 3456777
Q ss_pred hhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCh
Q 005268 339 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 415 (705)
Q Consensus 339 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 415 (705)
+...+...|+++.|...++.+++.... ...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999987644 8888999999999999999999999875 34566799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999853 234578888999999999999999999998864 223567899999999999999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 496 M----PVRPD----ASIWGALLGACRI---HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 496 ~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
+ +..|+ ..+|..+...+.. .|++++|...++++++.+|+++..+..++.+|...|++++|...++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 22232 4489999999999 99999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005268 565 RG 566 (705)
Q Consensus 565 ~~ 566 (705)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 63
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.3e-21 Score=214.49 Aligned_cols=420 Identities=9% Similarity=-0.018 Sum_probs=231.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005268 94 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 173 (705)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 173 (705)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.+..+++..+ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3457778888888899999999998888753 34667788888888888899999999888888753 367788888889
Q ss_pred HHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHHHccCChh
Q 005268 174 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA------GIQPDLLTLVSLTSIVAQLNDCR 247 (705)
Q Consensus 174 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~ 247 (705)
|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-------------- 167 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL-------------- 167 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH--------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH--------------
Confidence 999999999999887442 22223333344555556667888888887443 112222222
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHH--------cCChhHH
Q 005268 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI---SWNTLITGYAQ--------NGLASEA 316 (705)
Q Consensus 248 ~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A 316 (705)
..|....+.+.+...+......+.. .+..+...+.. .|++++|
T Consensus 168 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 168 --------------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp --------------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2222333333333333333322211 11111111111 1244555
Q ss_pred HHHHHhhhhcCCCCCCc--------ccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 005268 317 IEVFQMMEECNEINPNQ--------GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 388 (705)
Q Consensus 317 ~~~~~~m~~~~~~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 388 (705)
+.+|+++.+ ..|+. .++..+...+...|+++.|...+..+++.. |+...+..+...|.+.|++++|.
T Consensus 222 ~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 222 TDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 555555544 33331 123333334444555555555555555542 22444555555555555555555
Q ss_pred HHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 389 SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 389 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
..|+++. +.+...|..+...|...|++++|+..|+++.+. .|+ ...+..+..++...|++++|.++++.+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 373 (537)
T 3fp2_A 297 KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK- 373 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 5555443 233444555555555666666666666665553 232 345555555566666666666666555543
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhc----------CChhHHHHHHH
Q 005268 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRP----DASIWGALLGACRIH----------GNMELGAVASD 526 (705)
Q Consensus 465 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~ 526 (705)
.+.+...+..+...|.+.|++++|...++++- ..+ ....+..+...+... |++++|...++
T Consensus 374 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 -FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 11233455555666666666666666655541 001 112233334445555 66666666666
Q ss_pred HHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 527 RLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++++.+|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=4.6e-21 Score=205.16 Aligned_cols=342 Identities=10% Similarity=0.025 Sum_probs=210.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005268 163 NLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 239 (705)
Q Consensus 163 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 239 (705)
+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 445556666666666666666666665532 245566666666666666666666666665542 2234455566666
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCchh---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHH
Q 005268 240 VAQLNDCRNSRSVHGFIMRRGWFMEDV---IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEA 316 (705)
Q Consensus 240 ~~~~~~~~~a~~i~~~~~~~g~~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 316 (705)
+...|+++.|...+..+.+.. +.+. ..+..++..+... .+..+...+...|++++|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 5555 6776665553221 122223334445555555
Q ss_pred HHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005268 317 IEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 395 (705)
Q Consensus 317 ~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 395 (705)
+..|+++.+ ..| +...+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 163 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 163 IAFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544 223 33344445555555555555555555555432 2345556666666666666666666666554
Q ss_pred ---CCCcchHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHH
Q 005268 396 ---RSSSVPWNAI------------ISCHGIHGQGDKALNFFRQMLDEGVRPD-----HITFVSLLTACSHSGLVSEGQR 455 (705)
Q Consensus 396 ---~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 455 (705)
+.+...|..+ ...+...|++++|+..|+++.+ +.|+ ...+..+..++.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2222233333 7778888888888888888888 4555 3366777778888888888888
Q ss_pred HHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC----
Q 005268 456 YFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA------------CRIHG---- 516 (705)
Q Consensus 456 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g---- 516 (705)
.++.+.+. .| +...|..+..+|.+.|++++|...++++ ...|+ ..+|..+..+ |...|
T Consensus 317 ~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 317 VCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 88887754 34 5678888888888888888888888877 45554 5566666533 33334
Q ss_pred -ChhHHHHHHHH-HhccCCCC
Q 005268 517 -NMELGAVASDR-LFEVDSEN 535 (705)
Q Consensus 517 -~~~~a~~~~~~-~~~~~p~~ 535 (705)
+.+++.+.+++ .++..|++
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGG
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 56778888886 77788864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.1e-20 Score=207.27 Aligned_cols=438 Identities=8% Similarity=0.008 Sum_probs=316.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHh
Q 005268 63 VFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 139 (705)
Q Consensus 63 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 139 (705)
...+..+...|.+.|++++|...|+++. +.+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4567778889999999999999999875 3577889999999999999999999999998864 34677888889999
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCC------CeehHHHHHHHHHcCCChhh
Q 005268 140 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER------DVVSWNSIIAAYEQSNDPIT 213 (705)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~ 213 (705)
...|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 4332 222 2223344555666778899999888652 22233455666666777766
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 005268 214 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293 (705)
Q Consensus 214 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 293 (705)
++..+..... ..+....+...+....... ........|++++|..+|+++.
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~---------------------------~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSN--YDTAYALLSDALQRLYSAT---------------------------DEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCS--SCSSHHHHHHHHHHHHTCS---------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHhh---------------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 6555443321 1111111111111110000 0001111245566666666554
Q ss_pred CC---C-------hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhC
Q 005268 294 VK---D-------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 363 (705)
Q Consensus 294 ~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 363 (705)
.. + ..+|..+...+...|++++|+..|++..+ ..|+...+..+...+...|+++.|...+..+.+..
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 22 2 22466667788889999999999999988 66777778888888999999999999999998874
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 440 (705)
+.+..++..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 384 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF 384 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4467889999999999999999999999876 4556779999999999999999999999999853 3345688888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHH
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRA----------GHLGMAHNFIQNM-PVRP-DASI 504 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~ 504 (705)
...+...|++++|.+.|+.+.+...-.++ ...+..+...|.+. |++++|...++++ ...| +..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999998765221221 12244556778888 9999999999987 2334 5788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
|..+...+...|++++|...+++++++.|+++....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999998766544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=4.1e-18 Score=175.86 Aligned_cols=309 Identities=10% Similarity=0.084 Sum_probs=200.5
Q ss_pred ehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 005268 196 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275 (705)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~ 275 (705)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------- 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MD----------- 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----------
Confidence 455666677777777777777777776541 1123334444444444444444444444444432 22
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC---Cc-ccccch------------
Q 005268 276 YAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP---NQ-GTYVSI------------ 339 (705)
Q Consensus 276 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~-~t~~~l------------ 339 (705)
+...|..+...|...|++++|+..|++..+ ..| +. ..+..+
T Consensus 70 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 70 --------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544 333 21 111111
Q ss_pred hHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChH
Q 005268 340 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGD 416 (705)
Q Consensus 340 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 416 (705)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. +.+...|..+...|...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566677777777777776653 3456677778888888888888888887765 345556888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-----chHHHHHH
Q 005268 417 KALNFFRQMLDEGVRPDHI-TFV------------SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYGCMVD 478 (705)
Q Consensus 417 ~A~~~~~~m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~ 478 (705)
+|+..|++..+. .|+.. .+. .+...+...|++++|...++.+.+. .|+. ..+..+..
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHH
Confidence 888888888874 44432 222 2255677888888888888888764 3432 23555778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhh
Q 005268 479 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (705)
.|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.....+..++.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 888888888888888777 2334 57788888888888888888888888888888888777776665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=4.6e-18 Score=175.46 Aligned_cols=294 Identities=11% Similarity=0.029 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-Ccccccchh
Q 005268 265 DVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSIL 340 (705)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll 340 (705)
|+..+..+...+.+.|++++|...|+++. +.+..+|..+...+...|++++|+..|+++.+ ..| +...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCcchHHHHHH
Confidence 45567778888889999999999998764 44678899999999999999999999999988 556 456777888
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhhCC---CCCcchHH
Q 005268 341 PAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCL------------VDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 403 (705)
Q Consensus 341 ~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~ 403 (705)
..+...|++++|...+..+.+.... .+...+..+ ...+...|++++|...|+++. +.+...|.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 8999999999999999999886420 244444444 578899999999999999876 45666799
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-chHH--------
Q 005268 404 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYG-------- 474 (705)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~-------- 474 (705)
.+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHH
Confidence 99999999999999999999999852 335678889999999999999999999998864 4433 2222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhh
Q 005268 475 ----CMVDLFGRAGHLGMAHNFIQNM-PVRPD-A----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 544 (705)
Q Consensus 475 ----~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (705)
.++..+.+.|++++|...++++ ...|+ . ..|..+...+...|++++|...++++++.+|+++..+..++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3367799999999999999887 23344 3 235567789999999999999999999999999999999999
Q ss_pred hhhhcCCcchHHHHHHHHHhC
Q 005268 545 IYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 545 ~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+|...|++++|.+.++.+.+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999998875
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.4e-17 Score=167.99 Aligned_cols=286 Identities=12% Similarity=0.077 Sum_probs=218.7
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-Cccccc
Q 005268 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYV 337 (705)
Q Consensus 262 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~ 337 (705)
.+.+..+...++..+...|++++|.++|+++. +.+...+..++..+...|++++|...++++.+ ..| +...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LYPSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHH
Confidence 34555566666777777777777777777654 23455666677777777888888888877776 445 445566
Q ss_pred chhHHhhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcC
Q 005268 338 SILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG 413 (705)
Q Consensus 338 ~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 413 (705)
.+...+...| +++.|...+..+++.. +.+...+..+...|...|++++|...|+++. +.+..+|..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 6667777777 7788888887777653 3356678888888889999999999888775 344566888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC-------cCCcchHHHHHHHHHhcCCH
Q 005268 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-------KPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~li~~~~~~g~~ 486 (705)
++++|++.|++..+.. +.+...+..+...+...|++++|...++.+.+...- ......+..+...|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998842 334568888888999999999999999988764211 33456889999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh-hhcCCc
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKW 552 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 552 (705)
++|...++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999887 2233 5778999999999999999999999999999999999999999888 455553
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-16 Score=162.20 Aligned_cols=343 Identities=14% Similarity=0.146 Sum_probs=120.7
Q ss_pred HcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHH
Q 005268 74 CRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHL 153 (705)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 153 (705)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37899999999999997665 8999999999999999999999763 678899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhH
Q 005268 154 YIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 233 (705)
Q Consensus 154 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 233 (705)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 45678899999999999999999988863 77789999999999999999999999976 245
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCh
Q 005268 234 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 313 (705)
Q Consensus 234 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 313 (705)
..+..++.+.|+++. |.+.+++. .++.+|..++.+|...|++
T Consensus 152 ~~LA~~L~~Lg~yq~------------------------------------AVea~~KA--~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 152 GRLASTLVHLGEYQA------------------------------------AVDGARKA--NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp HHHHHHHHTTTCHHH------------------------------------HHHHHHHH--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHH------------------------------------HHHHHHHc--CCchhHHHHHHHHHHcCcH
Confidence 555555555555554 44444444 2444555555555555555
Q ss_pred hHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHH
Q 005268 314 SEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK--CGRIDDAMSLF 391 (705)
Q Consensus 314 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k--~g~~~~A~~~~ 391 (705)
+.|......+. +.|+. ...++..|.+.|.++++..+++..+... +.....++-|.-+|+| -+++.+..+.|
T Consensus 194 ~lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 194 RLAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55533322211 22222 2234444455555555555555444332 2234444445445544 45566666666
Q ss_pred hhCC---C-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005268 392 YQVP---R-----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMM 460 (705)
Q Consensus 392 ~~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 460 (705)
..-. + .+...|..+.-.|.+.++++.|.. .|.+. +|+ ...|.-++.--....-+=+|..++-
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-- 339 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL-- 339 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--
Confidence 5333 1 345558888888999999988876 45552 333 3444444432222222333333332
Q ss_pred HHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 461 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
.. .|. ..+-|..++...=+...+..+|++.
T Consensus 340 -~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 340 -EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHc
Confidence 11 232 3444555554444555555555544
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.5e-17 Score=167.61 Aligned_cols=320 Identities=12% Similarity=0.081 Sum_probs=154.5
Q ss_pred ccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 005268 176 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 255 (705)
Q Consensus 176 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 255 (705)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 899999999999999999999975 36778999999999999999999998887
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCccc
Q 005268 256 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 335 (705)
Q Consensus 256 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t 335 (705)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TC
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 7764 35578899999999999999999988864 67779999999999999999999999977 26
Q ss_pred ccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 005268 336 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 415 (705)
Q Consensus 336 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 415 (705)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999999987 378999999999999999999988777655 3444455788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHH--hccCcHHHHHHHHHHhHHhhCCcC------CcchHHHHHHHHHhcCCH
Q 005268 416 DKALNFFRQMLDEGVRPDH-ITFVSLLTAC--SHSGLVSEGQRYFHMMQEEFGIKP------HLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~ 486 (705)
++|+.+++..+. ..|.. ..|+.+.-++ .+.+++.+.++.|..- -+++| +...|.-++..|...+++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999986 44543 3555554444 4566777777766532 25555 578899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 487 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 487 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
+.|...+-+-+ |+..--..+.....+-.+.|.-.++..-.++..|
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 99987665543 2221122333444555555544444443343334
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.5e-14 Score=161.64 Aligned_cols=381 Identities=12% Similarity=0.051 Sum_probs=296.0
Q ss_pred hhhHHhHHHHhhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHH
Q 005268 129 PITVASILPVCARSDNILSGLLIHLYIVKHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 206 (705)
Q Consensus 129 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 206 (705)
+.-.....+++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+.....+....-+ ...+...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHH
Confidence 3334566778889999999999999988432 123556677777777766 4556666655554322 455778888
Q ss_pred cCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 005268 207 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSAC 286 (705)
Q Consensus 207 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~ 286 (705)
..|.+++|..+|++.. -.......++ ...++++.|.++...+ .+..+|..+..++.+.|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999952 1111122222 2667888888887743 45778999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCC
Q 005268 287 AVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 366 (705)
Q Consensus 287 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 366 (705)
..|.+. .|...|..++..+.+.|++++|++.|...++ ..+++...+.++.+|++.++++....+. + .+
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 999764 6788899999999999999999999998877 3455555556899999999888644442 2 34
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 446 (705)
+...+..+.+.|...|++++|...|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5566777999999999999999999986 48999999999999999999999977 355889999999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--CChhHHH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIH--GNMELGA 522 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--g~~~~a~ 522 (705)
.|.+..|..... ++..++..+..++..|.+.|.+++|+.+++.. ..+|. ...|.-|...+.+. +++.++.
T Consensus 1263 ~~Ef~LA~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999988654 24446668889999999999999999999776 44443 45776777766655 4677888
Q ss_pred HHHHHHhccCC-----CCcchhhhhhhhhhhcCCcchHHH
Q 005268 523 VASDRLFEVDS-----ENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 523 ~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
+.|..-..+.| .+...|.-+.-+|.+.|+|+.|..
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88887777766 677778889999999999999984
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=9e-16 Score=165.79 Aligned_cols=365 Identities=9% Similarity=0.001 Sum_probs=243.7
Q ss_pred ChhhHHhHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhccCCC-CeehH
Q 005268 128 DPITVASILPVCAR----SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----FGMMRHALRVFDQMMER-DVVSW 198 (705)
Q Consensus 128 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~ 198 (705)
|...+..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|...|++..+. +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44444444444444 455555555555555543 34444555555555 55555555555544322 33344
Q ss_pred HHHHHHHHc----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 005268 199 NSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 274 (705)
Q Consensus 199 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~ 274 (705)
..|...|.. .+++++|+..|++. .+.| +...+..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a-----------------------------------~~~~----~~~a~~~Lg~ 155 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLA-----------------------------------AEQG----RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH-----------------------------------HHTT----CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHH-----------------------------------HHCC----CHHHHHHHHH
Confidence 444444444 44455555555544 4333 2344455555
Q ss_pred HHHh----cCCHHHHHHHHhcCC-CCChhHHHHHHHHHHH----cCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhc
Q 005268 275 MYAK----LGIINSACAVFEGLP-VKDVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 345 (705)
Q Consensus 275 ~y~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 345 (705)
+|.. .++.++|...|++.. ..+..++..+...|.. .++.++|++.|++..+ .+ +...+..+...+..
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYF 231 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHc
Confidence 5555 566677776666543 2355666666666666 6777777777777665 32 33344445555543
Q ss_pred ----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhc----
Q 005268 346 ----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSLFYQVPR-SSSVPWNAIISCHGIH---- 412 (705)
Q Consensus 346 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~---- 412 (705)
.++.++|...++...+.| +...+..+..+|.. .++.++|...|++..+ .+...+..+...|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Confidence 667778888887777654 44566667777777 7899999999988764 4455677788888877
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHh----cC
Q 005268 413 -GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG---LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AG 484 (705)
Q Consensus 413 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g 484 (705)
+++++|+..|++..+.| +...+..+...+...| +.++|.++|+...+. .+...+..|..+|.. .+
T Consensus 309 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999865 4456666666676656 889999999988764 356788889999988 89
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCC---Ccchhhhhhhhhhh
Q 005268 485 HLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYAN 548 (705)
Q Consensus 485 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 548 (705)
++++|...+++.....+...+..|...|.. .+|.++|...++++.+.+|+ ++.....|+.++..
T Consensus 382 ~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999987434568888999999988 89999999999999999844 77777778777654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.1e-15 Score=166.82 Aligned_cols=128 Identities=9% Similarity=0.052 Sum_probs=81.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 92 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171 (705)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 171 (705)
.|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+++.+++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 35667888887 47778888888888888764 23345567777777777788888888888877753 4566666665
Q ss_pred HH-HHccCCHHHHHH----HHhccC-----C-CCeehHHHHHHHHHc---------CCChhhHHHHHHHHHH
Q 005268 172 NM-YAKFGMMRHALR----VFDQMM-----E-RDVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQ 223 (705)
Q Consensus 172 ~~-y~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 223 (705)
.. ....|+.++|++ +|+... . ++...|...+....+ .|++++|..+|++...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 42 234566555544 554431 1 234556666655443 4666777777777655
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-16 Score=162.04 Aligned_cols=264 Identities=10% Similarity=0.057 Sum_probs=226.5
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHH
Q 005268 294 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 372 (705)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 372 (705)
..+...+..+...+...|++++|+++|+++.+ ..| +...+..++..+...|++++|...+..+++.. +.+...+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 34666788888999999999999999999987 455 34455567788899999999999999999874 44677888
Q ss_pred HHHHHHHhcC-CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005268 373 CLVDMYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448 (705)
Q Consensus 373 ~li~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 448 (705)
.+...|...| ++++|...|++.. +.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999875 4456679999999999999999999999999953 334567777888999999
Q ss_pred cHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcC
Q 005268 449 LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-V----------RPDASIWGALLGACRIHG 516 (705)
Q Consensus 449 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g 516 (705)
++++|.+.++.+.+ ..| +...+..++..|.+.|++++|...++++- . +.+..+|..+...+...|
T Consensus 174 ~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 174 NSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999874 344 56788999999999999999999998761 1 334678999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999876654
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.9e-15 Score=163.58 Aligned_cols=410 Identities=9% Similarity=0.022 Sum_probs=255.6
Q ss_pred ChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--CCeehHHHHHHH-
Q 005268 128 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAA- 204 (705)
Q Consensus 128 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~- 204 (705)
|...|..++.. .+.|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567666663 56777888888887777653 44566777777777777888888888777654 555556655542
Q ss_pred HHcCCChhhHHH----HHHHHHH-CCCCCCh-hhHHHHHHHHHc---------cCChhhHHHHHHHHHHhcCCCchhHHH
Q 005268 205 YEQSNDPITAHG----FFTTMQQ-AGIQPDL-LTLVSLTSIVAQ---------LNDCRNSRSVHGFIMRRGWFMEDVIIG 269 (705)
Q Consensus 205 ~~~~g~~~~A~~----~~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 269 (705)
....|+.++|.+ +|++... .|..|+. ..|...+..... .|+++.++.++...++.. ......+|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHH
Confidence 234566666554 4444433 2444332 233333333222 344455555555544411 11111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhh------hcCC---CCCCc-------
Q 005268 270 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME------ECNE---INPNQ------- 333 (705)
Q Consensus 270 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~---~~p~~------- 333 (705)
..........|. ..+..++. .+.+++.+|..++.++. + .. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLD-RNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCC-SSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhc-cccccCCCCCChhHHHH
Confidence 222111100110 00111110 02344566666555421 1 11 23321
Q ss_pred -ccccchhHHhhc----cCch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 005268 334 -GTYVSILPAYSH----VGAL----RQGIKIHARVIKNCLCFDVFVATCLVDMYGK-------CGRID-------DAMSL 390 (705)
Q Consensus 334 -~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~ 390 (705)
..|...+..... .++. ..+..+++++++.. +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 122222211111 1222 36667888888763 4567788888888775 68876 89999
Q ss_pred HhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 391 FYQVPR----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 391 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
|++... .+...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|+++|+...+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-- 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 987763 2455699999999999999999999999998 56753 4788888888889999999999998874
Q ss_pred CCcCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc---
Q 005268 465 GIKPH-LKHYGCMVDL-FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG--- 537 (705)
Q Consensus 465 ~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 537 (705)
..|. ...|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++.
T Consensus 385 -~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 385 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 3443 2333332222 34689999999999876 3334 5789999999999999999999999999998776655
Q ss_pred -hhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 538 -YYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 538 -~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.+...+......|+.+.+..+.+.+.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777889999999999888765
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=5.7e-17 Score=168.16 Aligned_cols=277 Identities=9% Similarity=-0.011 Sum_probs=220.4
Q ss_pred HHhcCCHHHHHH-HHhcCC---CC----ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhcc
Q 005268 276 YAKLGIINSACA-VFEGLP---VK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHV 346 (705)
Q Consensus 276 y~~~g~~~~A~~-~f~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~ 346 (705)
|.-.|++++|.. .|++.. +. +...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 444578888888 777543 11 346688888999999999999999999987 455 455677788888999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHH---------------HHHH
Q 005268 347 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNA---------------IISC 408 (705)
Q Consensus 347 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~ 408 (705)
|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. .+...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999998875 45778888999999999999999999987752 22222321 2333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcC
Q 005268 409 HGIHGQGDKALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAG 484 (705)
Q Consensus 409 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 484 (705)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+. .| +...+..++..|.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcC
Confidence 44889999999999999995 454 678899999999999999999999998864 44 4678999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchhhhhhhhhhhcCC
Q 005268 485 HLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-----------VGYYVLMSNIYANVGK 551 (705)
Q Consensus 485 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~ 551 (705)
++++|...++++ ...| +..+|..+...+...|++++|...+++++++.|++ +..+..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999887 3334 57899999999999999999999999999999887 7889999999999999
Q ss_pred cchHHHHHHH
Q 005268 552 WEGVDEVRSL 561 (705)
Q Consensus 552 ~~~a~~~~~~ 561 (705)
+++|..+++.
T Consensus 346 ~~~A~~~~~~ 355 (368)
T 1fch_A 346 SDAYGAADAR 355 (368)
T ss_dssp GGGHHHHHTT
T ss_pred hHhHHHhHHH
Confidence 9999998764
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.5e-16 Score=161.38 Aligned_cols=245 Identities=15% Similarity=0.080 Sum_probs=131.4
Q ss_pred HccCCHHHHHH-HHhccCC-----C--CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh
Q 005268 175 AKFGMMRHALR-VFDQMME-----R--DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC 246 (705)
Q Consensus 175 ~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 246 (705)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------- 93 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---------------------- 93 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------
Confidence 33466666666 6654422 1 2445666666677777777777777766654
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 005268 247 RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMM 323 (705)
Q Consensus 247 ~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (705)
.+.+..++..+...|.+.|++++|...|++.. +.+..+|..+...|...|++++|++.|+++
T Consensus 94 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 94 ---------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24455666777777777778887777777543 446778888888888999999999999988
Q ss_pred hhcCCCCCCcccccc----------------hhHHhhccCchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHH
Q 005268 324 EECNEINPNQGTYVS----------------ILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDD 386 (705)
Q Consensus 324 ~~~~~~~p~~~t~~~----------------ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~ 386 (705)
.. ..|+...... .+..+...|++++|...+..+++..... +..++..+...|.+.|++++
T Consensus 159 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 159 LR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HH---TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HH---hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 87 4454433222 1222335555555555555555543211 34444455555555555555
Q ss_pred HHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 387 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 387 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
|...|+++. +.+...|..+...|...|++++|+..|+++.+. .|+ ..++..+..++...|++++|...|+.+.
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555544433 222333444444444444444444444444442 222 2344444444444444444444444443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=6e-16 Score=160.32 Aligned_cols=227 Identities=13% Similarity=0.045 Sum_probs=142.7
Q ss_pred CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 005268 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273 (705)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 273 (705)
+...|..+...+.+.|++++|+..|+++.+. .+.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------------~p~~~~~~~~lg 106 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-------------------------------------DPGDAEAWQFLG 106 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------------------CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------------------CcCCHHHHHHHH
Confidence 4455777777777777777777777777653 345566777778
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCccc-c----------cch
Q 005268 274 DMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-Y----------VSI 339 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~----------~~l 339 (705)
..|.+.|++++|...|++.. +.+..+|..+...|...|++++|+..|+++.+ +.|+... + ..+
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK---QNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHCC--------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCccchHHHhhhccchHHHHHH
Confidence 88888888888888887654 34677888889999999999999999999887 4453221 1 223
Q ss_pred hHHhhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCh
Q 005268 340 LPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 415 (705)
Q Consensus 340 l~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 415 (705)
...+...|++++|...+..+++.... .+..++..+...|.+.|++++|...|+++. +.+...|+.+...|...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 55666667777777777777665322 145566666666666666666666665543 23344466666666666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 416 DKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
++|+..|+++++. .|+ ..++..+..+|...|++++|...|+.+.+
T Consensus 264 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 264 EEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666553 333 34555555555566666666665555543
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=4.3e-13 Score=151.78 Aligned_cols=380 Identities=9% Similarity=0.066 Sum_probs=266.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHhccCC-CC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhH
Q 005268 62 DVFVAASLLHMYCRFGLANVARKLFDDMP-VR-----DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 135 (705)
Q Consensus 62 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 135 (705)
|+.--...++.|...|...+|.++++++. .+ +...-|.++.+..+. +..+..+...+... ....-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 34444566778888888888888888776 22 224466677666666 44555555555431 223346
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHH
Q 005268 136 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAH 215 (705)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 215 (705)
...|...|.+++|.++|+... ......+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 667778888888888888741 1222223332 26788888888888774 4567888889999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 005268 216 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK 295 (705)
Q Consensus 216 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 295 (705)
+.|.+. -|...|..+..++.+.|+++++.+.+....+.. +++.+.+.++..|+|.+++++..... ..+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 988653 466678888888899999999888888777653 44444456888888888888644443 345
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 375 (705)
+...|..+...|...|++++|..+|.... .|..+...+.+.|+++.|.+.++.+ .+..+|..+.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 66677778888888899999988888752 5778888888888888888888765 3557777777
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH--HHHHHhccCcHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVS--LLTACSHSGLVSE 452 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~--ll~a~~~~g~~~~ 452 (705)
.++...|++..|...... ...+...+..++.-|...|.+++|+.+++..+. +.|.. ..|.- .+.+-.+.+++.+
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 788888888888887664 333444566888888888999999999887775 44544 24433 3444445566666
Q ss_pred HHHHHHHhHHhhCCcC------CcchHHHHHHHHHhcCCHHHHHHHH
Q 005268 453 GQRYFHMMQEEFGIKP------HLKHYGCMVDLFGRAGHLGMAHNFI 493 (705)
Q Consensus 453 a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 493 (705)
+.++|..-. .++| +...|.-++-+|.+.|+++.|...+
T Consensus 1335 hlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1335 HLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 666665322 4444 4567888888888889888887443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-15 Score=164.34 Aligned_cols=364 Identities=10% Similarity=0.015 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhccC-----------C-CCeehHHHHHHHHHcCCChhhHHHHHHHHHHCC------
Q 005268 164 LFVSNNLINMYAKFGMMRHALRVFDQMM-----------E-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG------ 225 (705)
Q Consensus 164 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 225 (705)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4556667777777777777776665431 1 234577778888888888888888777764320
Q ss_pred CCCC-hhhHHHHHHHHHc--cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 005268 226 IQPD-LLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 302 (705)
Q Consensus 226 ~~p~-~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 302 (705)
..++ ..++.....++.. .+++++|...|..+++.. |.++..+..+...+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~------------------------ 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYR------------------------ 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHH------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH------------------------
Confidence 0111 1222222222222 233445555555554442 2333333333322211
Q ss_pred HHHHHHHcCChhHHHHHHHhhhhcCCCCCCc-ccccchhHHhh----ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005268 303 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYS----HVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377 (705)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 377 (705)
+...++.++|++.|++..+ +.|+. .++..+...+. ..++.++|.+.++.+.+.. +.+..++..+...
T Consensus 185 ----l~~~~~~~~al~~~~~al~---l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 185 ----LDNWPPSQNAIDPLRQAIR---LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF 256 (472)
T ss_dssp ----HHHSCCCCCTHHHHHHHHH---HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred ----hcCchHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 2223444455555555444 33322 12222222221 2234445555555554442 2334445555555
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCC-H
Q 005268 378 YGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI-------------------HGQGDKALNFFRQMLDEGVRPD-H 434 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~-~ 434 (705)
|.+.|++++|...|++.. +.+...|..+...|.. .+..++|+..|++..+. .|+ .
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTC
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchh
Confidence 555555555555555443 2222334444333321 23356788888888774 444 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVD-LFGRAGHLGMAHNFIQNM-PVRPDASIWGAL 508 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 508 (705)
.++..+...+...|++++|.+.|+...+. .|+.. .+..+.. .+...|+.++|+..+++. .+.|+...+...
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 56777888888999999999999887753 33322 2233333 235678999999988776 566665443332
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeE
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 575 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 575 (705)
.+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+.......+|
T Consensus 412 ---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 ---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3445667888888999999999999999999999999999999998876544444555
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2.8e-15 Score=149.33 Aligned_cols=264 Identities=10% Similarity=-0.001 Sum_probs=180.3
Q ss_pred cCCHHHHHHHHhcCCCCCh----hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHH
Q 005268 279 LGIINSACAVFEGLPVKDV----ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354 (705)
Q Consensus 279 ~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 354 (705)
.|+++.|+..++.....+. ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|.+
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4455555555444333221 12233444555555555555433221 22333444444455555555555555
Q ss_pred HHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005268 355 IHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 355 ~~~~~~~~g~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 433 (705)
.++.++..+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 5555554443 23455667777889999999999999998 566778999999999999999999999999985 576
Q ss_pred HHHH---HHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005268 434 HITF---VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGAL 508 (705)
Q Consensus 434 ~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 508 (705)
.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..++++ ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5422 12334445569999999999999875 3456778999999999999999999999986 3445 57789999
Q ss_pred HHHHHhcCChhH-HHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 509 LGACRIHGNMEL-GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 509 l~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
+..+...|+.++ +...++++++++|+++... +...+.+.++++..
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999875 6789999999999887543 34445555555443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=2.4e-16 Score=163.32 Aligned_cols=258 Identities=8% Similarity=-0.061 Sum_probs=191.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 374 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 374 (705)
+...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 344566666667777777777777777665 334 34456666666667777777777777766653 3356677777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---Cc----------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPRS---SS----------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFV 438 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~~---~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~ 438 (705)
...|.+.|++++|...|+++... +. ..+..+...+...|++++|++.|+++.+. .| +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHH
Confidence 77888888888888887776521 11 12344578889999999999999999995 44 467888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005268 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 516 (705)
Q Consensus 439 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 516 (705)
.+...+...|++++|.+.|+.+.+. .+.+...|..++.+|.+.|++++|+..++++ ...| +..+|..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999998864 2335678999999999999999999999887 3345 4889999999999999
Q ss_pred ChhHHHHHHHHHhccCCC------------CcchhhhhhhhhhhcCCcchHHHHHHH
Q 005268 517 NMELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
++++|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999998876 356788899999999999988877654
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.4e-13 Score=148.52 Aligned_cols=352 Identities=12% Similarity=0.060 Sum_probs=193.1
Q ss_pred CHHHHHHHHHHHHc----CCChhHHHHHhccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhH
Q 005268 62 DVFVAASLLHMYCR----FGLANVARKLFDDMPV-RDSGSWNAMISGYCQ----SGNAVEALDILDEMRLEGVSMDPITV 132 (705)
Q Consensus 62 ~~~~~~~ll~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 132 (705)
++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56666666666766 6777777777775542 455667777777777 777777777777777654 44555
Q ss_pred HhHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhccCC-CCeehHHHHHH
Q 005268 133 ASILPVCAR----SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----FGMMRHALRVFDQMME-RDVVSWNSIIA 203 (705)
Q Consensus 133 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~ 203 (705)
..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 567777777777777665 45556666666665 5667777777765533 34555666666
Q ss_pred HHHc----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 005268 204 AYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ----LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDM 275 (705)
Q Consensus 204 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~ 275 (705)
.|.. .+++++|+..|++..+.| +...+..+...+.. .++.+.|...+....+.| +...+..|..+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 6665 666677777766665543 23334344444332 445555555555544433 22333344444
Q ss_pred HHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchH
Q 005268 276 YAK----LGIINSACAVFEGLPV-KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 350 (705)
Q Consensus 276 y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~ 350 (705)
|.. .++.++|...|+...+ .+..++..+...|.... ....++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~-------------------------------~g~~~~~~ 313 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA-------------------------------EGVAKNRE 313 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCB-------------------------------TTBCCCHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------------------------------CCCcCCHH
Confidence 444 4445555555444322 23334444444444430 00004455
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC-CCCcchHHHHHHHHHh----cCChHHHHHHH
Q 005268 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVP-RSSSVPWNAIISCHGI----HGQGDKALNFF 422 (705)
Q Consensus 351 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~ 422 (705)
+|...+..+.+.| +...+..|..+|.+.| +.++|.+.|++.. ..+...+..+...|.. .+++++|+..|
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 5555555544443 2334444444554434 4555555555444 2334445555555555 55666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHh
Q 005268 423 RQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEE 463 (705)
Q Consensus 423 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~ 463 (705)
++..+.| +...+..+...|.. .++.++|...|+...+.
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 6665543 34444455555554 55666666666665543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.1e-15 Score=155.36 Aligned_cols=255 Identities=9% Similarity=-0.033 Sum_probs=179.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005268 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378 (705)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 378 (705)
|..+...+...|++++|+.+|+++.+ ..| +..++..+...+...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34444444555555555555555444 223 22333444444455555555555555554442 23445556666666
Q ss_pred HhcCCHHHHHHHHhhCCC---CCcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005268 379 GKCGRIDDAMSLFYQVPR---SSSVPWNAI--------------IS-CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 440 (705)
Q Consensus 379 ~k~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 440 (705)
.+.|++++|...|+++.. .+...+..+ .. .+...|++++|++.++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666665541 222223222 22 3677889999999999999853 3356788888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN 517 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 517 (705)
...+...|++++|.+.++.+.+. .| +...+..++..|.+.|++++|...++++ ...| +..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 89999999999999999998764 34 4678899999999999999999999887 3334 57889999999999999
Q ss_pred hhHHHHHHHHHhccCCC------------CcchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 518 MELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 518 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
+++|...+++++++.|+ ++..+..++.+|...|++++|..+++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6788899999999999999999988644
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.5e-14 Score=146.90 Aligned_cols=226 Identities=12% Similarity=0.003 Sum_probs=130.8
Q ss_pred CeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 005268 194 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 273 (705)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 273 (705)
+...|..+...+...|++++|+.+|+++.+. .+.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~~l~ 62 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-------------------------------------APEREEAWRSLG 62 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------CCCCHHHHHHHH
Confidence 3345666677777777777777777777653 234455556666
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchh----------
Q 005268 274 DMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL---------- 340 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll---------- 340 (705)
..|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.+ ..|+.......+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDL 139 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHH
Confidence 66777777777777766543 34566778888888888888888888888877 445433322222
Q ss_pred ----H--HhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHh
Q 005268 341 ----P--AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI 411 (705)
Q Consensus 341 ----~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 411 (705)
. .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. +.+...|..+...|..
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 2 2555666667766666666553 2245555555555655565555555555443 2233345555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 412 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 412 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+.
T Consensus 219 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555555555555555421 1123344444445555555555555554444
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=178.74 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHhccCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHh
Q 005268 62 DVFVAASLLHMYCRFGLANVARKLFDDMP-------VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 134 (705)
Q Consensus 62 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (705)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC-----CCeehHHHHHHHHHcC
Q 005268 135 ILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-----RDVVSWNSIIAAYEQS 208 (705)
Q Consensus 135 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~ 208 (705)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.- +.+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78999999999999999999999999888877666666555544432 1233445566777766
Q ss_pred C
Q 005268 209 N 209 (705)
Q Consensus 209 g 209 (705)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=9.2e-15 Score=145.61 Aligned_cols=226 Identities=7% Similarity=-0.004 Sum_probs=161.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 005268 166 VSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 245 (705)
Q Consensus 166 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 245 (705)
....+..+|...|+++.|...++....|+..++..+...+...++.++|++.++++...+..|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P----------------- 98 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDV----------------- 98 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC-----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC-----------------
Confidence 334456677777777777777766544555666777777777778888888888776654333
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 246 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 246 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+
T Consensus 99 ------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 99 ------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp ------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455566777889999999999999998 56788999999999999999999999999988
Q ss_pred cCCCCCCcccccchh----HHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 005268 326 CNEINPNQGTYVSIL----PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSS 398 (705)
Q Consensus 326 ~~~~~p~~~t~~~ll----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~ 398 (705)
..|+.. ...+. ..+...|++++|..+++.+++. .+.+..+++.+..+|.+.|++++|...|++.. +.+
T Consensus 159 ---~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 159 ---QDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp ---HCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---hCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 457643 22222 2233447788888888887776 34567777777777777777777777777654 344
Q ss_pred cchHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCCHH
Q 005268 399 SVPWNAIISCHGIHGQGDK-ALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 435 (705)
..+|..++..+...|+.++ +.++++++++ +.|+..
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 5557777777777777654 4567777776 456554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=174.35 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=110.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 005268 364 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 436 (705)
Q Consensus 364 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 436 (705)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33456689999999999999999999997653 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 437 FVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 437 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
|+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....|.+-++...++...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999999887 57889999999887 9999999999998887777655555554333
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=7.1e-14 Score=150.18 Aligned_cols=387 Identities=11% Similarity=-0.015 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-ChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchh
Q 005268 94 SGSWNAMISGYCQSGNAVEALDILDEMRLE-----G--VSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 165 (705)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 165 (705)
...||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 445777777888888888888888776431 0 111 22344555555555555555555554443320
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCCC----CeehHHHHHHHHHc--CCChhhHHHHHHHHHHCCCCCChh-hHHHHHH
Q 005268 166 VSNNLINMYAKFGMMRHALRVFDQMMER----DVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQAGIQPDLL-TLVSLTS 238 (705)
Q Consensus 166 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 238 (705)
.....+ ...+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 000110 11233333333332 34566666666666553 34332 2222222
Q ss_pred H---HHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 005268 239 I---VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----LGIINSACAVFEGLP---VKDVISWNTLITGYA 308 (705)
Q Consensus 239 a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 308 (705)
+ +...++.+.+.+.+...++.. +.+..++..+...+.. .|++++|.+.+++.. +.+..+|..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 2 334455666666666666654 4555555555544444 456778888887543 456778899999999
Q ss_pred HcCChhHHHHHHHhhhhcCCCCCCcc-cccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 005268 309 QNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 387 (705)
Q Consensus 309 ~~g~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 387 (705)
..|++++|+..|++..+ ..|+.. ++..+...+...+.. .... ............+..+.|
T Consensus 259 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~y~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALE---YIPNNAYLHCQIGCCYRAKVFQ---------VMNL-------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHH---------hhhH-------HHHHHHHHHHHHhhHHHH
Confidence 99999999999999987 667543 232232222111100 0000 000111111122345677
Q ss_pred HHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhH
Q 005268 388 MSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLT-ACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 388 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~ 461 (705)
...|++.. +.+...|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|....
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777654 5566779999999999999999999999999854333221 2223322 3457899999999998877
Q ss_pred HhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 462 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
+ +.|+........ ..+..++++. .. +.+..+|..|...+...|++++|+..|+++++++|.+|.+.
T Consensus 400 ~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 4 566643332222 2333344333 22 33577899999999999999999999999999999888776
Q ss_pred hhhh
Q 005268 540 VLMS 543 (705)
Q Consensus 540 ~~l~ 543 (705)
.-++
T Consensus 468 ~~~G 471 (472)
T 4g1t_A 468 SWNG 471 (472)
T ss_dssp ----
T ss_pred hcCC
Confidence 5554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=5.6e-14 Score=133.50 Aligned_cols=193 Identities=14% Similarity=0.069 Sum_probs=155.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005268 365 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSL 440 (705)
Q Consensus 365 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 440 (705)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566778888889999999999999999765 345566889999999999999999999999994 565 4678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 005268 441 LTACSHS-----------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGA 507 (705)
Q Consensus 441 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 507 (705)
..++... |++++|...++...+. .| +...+..+..+|...|++++|+..|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999998854 56 4578889999999999999999999887 22267889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
+...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.6e-14 Score=136.72 Aligned_cols=218 Identities=13% Similarity=0.028 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005268 298 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 377 (705)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 377 (705)
..|..+...+...|++++|+..|++..+ .. .+..++..+...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------------------------~~--~~~~~~~~~~~~ 47 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE------------------------------------LH--KDITYLNNRAAA 47 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------HS--CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH------------------------------------hh--ccHHHHHHHHHH
Confidence 3455566666666666666666666655 32 333444455555
Q ss_pred HHhcCCHHHHHHHHhhCCC---C---C----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005268 378 YGKCGRIDDAMSLFYQVPR---S---S----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~---~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 447 (705)
|...|++++|...|++... . + ...|..+...|...|++++|+..|++..+ +.|+.. .+...
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~ 118 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKL 118 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHH
Confidence 5555555555555554431 1 1 34567777778888888888888888887 455532 45566
Q ss_pred CcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 005268 448 GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVA 524 (705)
Q Consensus 448 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 524 (705)
|++++|.+.++.+... .| +...+..+...+.+.|++++|...++++ .. +.+..+|..+...+...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7888888888887642 33 4567788888888999999999888877 22 33577888999999999999999999
Q ss_pred HHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 525 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++++++..|+++..+..++.+|...|++++|...++.+.+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888765
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.4e-13 Score=135.89 Aligned_cols=243 Identities=12% Similarity=0.019 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcc--cccchhHHhh
Q 005268 270 NAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG--TYVSILPAYS 344 (705)
Q Consensus 270 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--t~~~ll~a~~ 344 (705)
......+.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ .+-.|+.. .+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 344455555566666665555432 22344555555555555666666655555554 22111110 1334444444
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005268 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
..|++++|...+..+++.. +.+..+ |..+...|...|++++|+..|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~-------------------------------~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDM-------------------------------YGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHH-------------------------------HHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHH-------------------------------HHHHHHHHHHccCHHHHHHHHHH
Confidence 4455555555555444432 123334 44444445555555555555544
Q ss_pred HHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC---
Q 005268 425 MLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGH---LGMAHNFIQNM--- 496 (705)
Q Consensus 425 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~--- 496 (705)
.++. .|+. ..+..+...+...+++++|.+.|+.+.+. .|+ ...+..+...+...|+ +++|...++++
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 4442 2322 23333331222233555555555554432 222 3344444444444444 44444444333
Q ss_pred -CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC
Q 005268 497 -PVRPD------ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550 (705)
Q Consensus 497 -~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (705)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467788888999999999999999999999999988887776665444
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-13 Score=134.22 Aligned_cols=241 Identities=11% Similarity=-0.029 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHH
Q 005268 265 DVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 342 (705)
Q Consensus 265 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 342 (705)
....+..+...|.+.|++++|...|++... .+...|..+...|...|++++|++.|++..+ +.|+...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~------- 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE---QGREMRA------- 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCccccc-------
Confidence 456788899999999999999999986531 6778899999999999999999999999877 3342100
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
+ .+....++..+...|.+.|++++|...|++....+.. ...+...|++++|+..+
T Consensus 74 -----~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 74 -----D---------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKA 128 (258)
T ss_dssp -----C---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHH
T ss_pred -----c---------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHH
Confidence 0 0001234455555556666666666666554421111 23455567777888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 005268 423 RQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP 500 (705)
Q Consensus 423 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 500 (705)
+++.. ..|+. ..+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ...|
T Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 129 EAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88777 34543 46667777788888888888888887754 1224567788888888888888888888776 2334
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchhhhhhh
Q 005268 501 -DASIWGALLGACRIHGNMELGAVASDRLFEVD------SENVGYYVLMSN 544 (705)
Q Consensus 501 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 544 (705)
+..+|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 47788889999999999999999999999988 776666555544
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.9e-13 Score=134.98 Aligned_cols=240 Identities=8% Similarity=-0.102 Sum_probs=181.9
Q ss_pred cCChhHHHHHHHhhhhcCCC--CC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 005268 310 NGLASEAIEVFQMMEECNEI--NP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 386 (705)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 386 (705)
.|++++|+..|+++.+ ... .| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4667777777777766 211 11 34456666677777777777777777777763 3467788888899999999999
Q ss_pred HHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005268 387 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463 (705)
Q Consensus 387 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 463 (705)
|...|++.. +.+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998776 44567799999999999999999999999998 4677665555666667789999999999887764
Q ss_pred hCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 464 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 464 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
.+++... ..++..+...++.++|.+.+++.- ..|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2334334 457788888899999999998773 3332 578899999999999999999999999999997744
Q ss_pred hhhhhhhhhhhcCCcchHHHHH
Q 005268 538 YYVLMSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~ 559 (705)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 356777888888887665
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=5.7e-12 Score=133.88 Aligned_cols=367 Identities=10% Similarity=0.018 Sum_probs=183.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH---HHHHHHHhccCCCCeehHHHHHHHHHcCC-----Chh
Q 005268 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM---RHALRVFDQMMERDVVSWNSIIAAYEQSN-----DPI 212 (705)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 212 (705)
+.|++++|.+.+....+.| +...+..|..+|...|+. ++|...|+...+.+...+..|...+...+ +++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 3444455555555444443 222233344444445555 66666666655555555555555444443 566
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhh---HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcC----CHHHH
Q 005268 213 TAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN---SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG----IINSA 285 (705)
Q Consensus 213 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g----~~~~A 285 (705)
+|+..|++..+.|... .+..+...+...+.... +.+.+......| ++.....|..+|...+ ..+.+
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 7777777776654322 44444444444333222 223333333333 3444555566666655 33444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcC---ChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHh
Q 005268 286 CAVFEGLPVKDVISWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 362 (705)
Q Consensus 286 ~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 362 (705)
..+++.....+..++..|...|...| +.++|++.|++..+ .
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------------------------~ 208 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------------------------R 208 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------------T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------------------------C
Confidence 44454444445555555665565555 55555555555544 3
Q ss_pred CCCCchhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHH
Q 005268 363 CLCFDVFVATCLVDMYGKC----GRIDDAMSLFYQVPRSSSVPWNAIISC-H--GIHGQGDKALNFFRQMLDEGVRPDHI 435 (705)
Q Consensus 363 g~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 435 (705)
| +++...+..|..+|... ++.++|...|++..+.+...+..|... | ...+++++|++.|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3 22223233444444433 566667666666553344445555555 3 34677888888888887765 455
Q ss_pred HHHHHHHHHhccC-----cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 005268 436 TFVSLLTACSHSG-----LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWG 506 (705)
Q Consensus 436 t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 506 (705)
.+..|...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|...|++.-...+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 5555555555 44 7888888877554 2345566667766665 337888888887763333444555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 507 ALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 507 ~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
.|...|.. ..|.++|...++++.+..+.+.......+......++.++|.++.+.-+
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 66666553 4578888888888887665332222222222223344555655555443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=9.9e-13 Score=135.46 Aligned_cols=242 Identities=10% Similarity=0.066 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCC-cccccchhHHhhccCc-hHHHHHHHHHHHHhCCCCchhHHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCL 374 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l 374 (705)
...|+.+...+...|++++|++.|++..+ +.|+ ...|..+..++...|+ +++|...++.+++.. +.+...|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 34566667777777777777777777776 5664 3455666666777775 777777777777764 3366778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc-cCc
Q 005268 375 VDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH-SGL 449 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~ 449 (705)
..+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888776 456667888999999999999999999999984 554 5688888888888 566
Q ss_pred HHHH-----HHHHHHhHHhhCCcC-CcchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----
Q 005268 450 VSEG-----QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAG--HLGMAHNFIQNMPVRPD-ASIWGALLGACRIHG---- 516 (705)
Q Consensus 450 ~~~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g---- 516 (705)
.++| ++.++...+ +.| +...|..+..+|.+.| ++++|++.++++...|+ ...+..|...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5666 477777764 356 4568888888898888 68999998888754554 678888888888864
Q ss_pred ----C-hhHHHHHHHHH-hccCCCCcchhhhhhhhhh
Q 005268 517 ----N-MELGAVASDRL-FEVDSENVGYYVLMSNIYA 547 (705)
Q Consensus 517 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 547 (705)
+ .++|+.+++++ .+++|.....|..++..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 9999988888887776554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1.2e-12 Score=126.39 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=119.2
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHH
Q 005268 343 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKAL 419 (705)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 419 (705)
+...|+++.|...+..+++.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 333344444444444433321 2234455555566666666666666666544 234445666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005268 420 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 498 (705)
Q Consensus 420 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 498 (705)
+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..++..+.+.|++++|...++++ ..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777642 234456666666777777777777777776643 1224556667777777777777777777665 22
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhh
Q 005268 499 -RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547 (705)
Q Consensus 499 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (705)
+.+..+|..+...+...|++++|...++++++++|+++..+..++.+..
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 2346677777777777777777887777777777777766666555443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=3e-12 Score=121.89 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 443 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 443 (705)
+...+..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45556667777777777777777777654 3345557777777777788888888887777742 2345567777777
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhhCCcCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005268 444 CSHS-GLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME 519 (705)
Q Consensus 444 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 519 (705)
+... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|...++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 888888888877765 123332 456777777778888888888777766 2233 4667777777888888888
Q ss_pred HHHHHHHHHhccCC-CCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 520 LGAVASDRLFEVDS-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 520 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77777777777778888888888877777654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=2.4e-12 Score=125.29 Aligned_cols=196 Identities=9% Similarity=-0.053 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 444 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 444 (705)
...+..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666667777777777777776654 3344557777777777777777887777777742 22455667777777
Q ss_pred hccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005268 445 SHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 445 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 521 (705)
...|++++|.++++.+.+ .+..| +...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777888888887777654 12344 3456677777777888888888777765 2223 466777777788888888888
Q ss_pred HHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 522 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888877777777888888888888888888777665
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1.1e-11 Score=122.27 Aligned_cols=223 Identities=12% Similarity=-0.019 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 375 (705)
+..++..+...|...|++++|++.|++..+ .+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~--------------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK--------------------------------------ENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT--------------------------------------CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC--------------------------------------CHHHHHHHH
Confidence 455666666666666777777777666654 11 222333344
Q ss_pred HHHHh----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005268 376 DMYGK----CGRIDDAMSLFYQVPR-SSSVPWNAIISCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 446 (705)
Q Consensus 376 ~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 446 (705)
..|.. .|++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 5555555555544432 233345555555555 666666666666666643 44555555556665
Q ss_pred ----cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005268 447 ----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI---- 514 (705)
Q Consensus 447 ----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 514 (705)
.+++++|.++|+...+. + +...+..+...|.+ .+++++|...+++.-...+...+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 66666666666666543 2 34455556666665 66777777666665222345666667777777
Q ss_pred cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh----cCCcchHHHHHHHHHhCC
Q 005268 515 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 566 (705)
.+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777777777777777655 4566667777777 777777777777776654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=3.6e-12 Score=120.98 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=43.8
Q ss_pred CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 005268 382 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 382 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
|++++|...|++.. +.+...|..+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433 2223334444444555555555555555555443 344444444445555555555555555
Q ss_pred HhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 459 MMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 459 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
...+. .| +...+..+..++.+.|++++|.+.+++
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44432 22 233444444444444555554444443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=1.3e-12 Score=126.22 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=155.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005268 366 FDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 442 (705)
Q Consensus 366 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 442 (705)
.....+..+...+.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345667778888999999999999999875 3456678899999999999999999999999853 335678888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhH
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMEL 520 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 520 (705)
.+...|++++|.++++.+.+.. +.+...+..++..+.+.|++++|...++++ .. +.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988652 335678889999999999999999999887 22 3467889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 521 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
|+..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998753
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=9.6e-12 Score=120.96 Aligned_cols=204 Identities=13% Similarity=0.052 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 297 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 376 (705)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 376 (705)
...|..+...+...|++++|++.|+++.+ ..|+ +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~----------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDPS----------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCC----------------------------------hHHHHHHHHH
Confidence 45677777778888888888888887766 2232 2334455555
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHH
Q 005268 377 MYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSE 452 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 452 (705)
.|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665543 234445666777777777788888888877764345543 566777778888888888
Q ss_pred HHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 453 GQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 453 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
|.+.++.+.+. .| +...+..++..|.+.|++++|...++++ ... .+...|..+...+...|+.++|...++++.
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888887754 33 4567888888888999999998888876 333 456778888889999999999999999999
Q ss_pred ccCCCCcchhh
Q 005268 530 EVDSENVGYYV 540 (705)
Q Consensus 530 ~~~p~~~~~~~ 540 (705)
++.|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99998876544
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=7.4e-12 Score=123.42 Aligned_cols=213 Identities=10% Similarity=-0.058 Sum_probs=126.6
Q ss_pred CCChhhHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHH
Q 005268 208 SNDPITAHGFFTTMQQAGIQP---DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 284 (705)
Q Consensus 208 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 284 (705)
.|++++|+..|+++.+..... +..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 455666666666665542111 23344445555555566666666555555553 5556677777777777777777
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHH
Q 005268 285 ACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 361 (705)
Q Consensus 285 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 361 (705)
|...|++.. +.+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|+++.|...+..+..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777776554 33566777777777778888888888877776 556554444444445556677777777766655
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005268 362 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS-------SVPWNAIISCHGIHGQGDKALNFFRQMLD 427 (705)
Q Consensus 362 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 427 (705)
.. +++...+ .++..+...++.++|...+++....+ ...|..+...|...|++++|+..|++..+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 2233333 25555555666666666666554332 23355555556666666666666666555
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=1.6e-11 Score=120.85 Aligned_cols=239 Identities=13% Similarity=0.061 Sum_probs=165.0
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHH
Q 005268 230 LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDV----ISWNTL 303 (705)
Q Consensus 230 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~l 303 (705)
...+......+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|++... ++. .+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3455667778899999999999999999875 66777889999999999999999999987653 222 348899
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCCc-ccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 382 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 382 (705)
...|...|++++|++.|++..+ ..|+. .++..+.. .|.+.|
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~-----------------------------------~~~~~~ 122 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGS-----------------------------------YFYNKG 122 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHH-----------------------------------HHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHH-----------------------------------HHHHcc
Confidence 9999999999999999999988 55643 23333333 344556
Q ss_pred CHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc---HHHHHH
Q 005268 383 RIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGL---VSEGQR 455 (705)
Q Consensus 383 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~ 455 (705)
++++|...|++... .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|+ +++|..
T Consensus 123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 66666666665552 23333555552333344778888888887773 454 4566666666766676 677777
Q ss_pred HHHHhHHhhCCcCCc------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 005268 456 YFHMMQEEFGIKPHL------KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLG 510 (705)
Q Consensus 456 ~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 510 (705)
.++...+...-.|+. ..|..+...|.+.|++++|.+.++++ ...|+ ...+..+..
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 777776553333442 46777788888888888888888776 33443 444544433
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=5.5e-12 Score=134.01 Aligned_cols=343 Identities=11% Similarity=0.033 Sum_probs=183.9
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCh---hhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 005268 201 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC---RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277 (705)
Q Consensus 201 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 277 (705)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|.. ++|...+....+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 55667778888888888888877652 22333333334445555 6666666666532 3444555555444
Q ss_pred hcC-----CHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCChhH---HHHHHHhhhhcCCCCCCcccccchhHHhhccCc
Q 005268 278 KLG-----IINSACAVFEGLPVK-DVISWNTLITGYAQNGLASE---AIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348 (705)
Q Consensus 278 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~ 348 (705)
..+ +.++|...|++...+ +...+..|...|...+..++ +.+.+..... .| +......+...+...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HT---CTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCC
Confidence 443 566777777654432 44566666666666554433 3333333332 11 23344445555555554
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCc---chHHHHHHHHHhc----CChHHH
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVPRSSS---VPWNAIISCHGIH----GQGDKA 418 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~----g~~~~A 418 (705)
++.+........+.-...++..+..|..+|.+.| +.++|...|++..+.+. ..+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 4433333222222222233346667777777777 77777777776653222 2235566666443 577777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcC-----CHHHHH
Q 005268 419 LNFFRQMLDEGVRPDHITFVSLLTA-C--SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-----HLGMAH 490 (705)
Q Consensus 419 ~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~ 490 (705)
+..|++.. .| +...+..+... + ...+++++|.++|+...+. | +...+..|..+|. .| ++++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 77777766 32 33344444443 2 4467777777777776643 3 4456666666665 44 777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh----cCCcchHHHHHHHH
Q 005268 491 NFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLA 562 (705)
Q Consensus 491 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 562 (705)
..|++.- ..+...+..|...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|...++..
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 7777776 5556666666665554 23777777777776653 345666777777754 34677777777777
Q ss_pred HhCCC
Q 005268 563 RDRGL 567 (705)
Q Consensus 563 ~~~~~ 567 (705)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 76654
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=135.79 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHH
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQ--------------------GDKAL 419 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 419 (705)
.++..+...|...|++++|...|++... .+ ...+..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455556666666666666666655431 11 2246666667777777 77777
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHH
Q 005268 420 NFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAH 490 (705)
Q Consensus 420 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 490 (705)
..+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777766542 11122 235666777788888888888888777643211222 236777788888888888888
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchhhhhhhhhhhcCCcchHH
Q 005268 491 NFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVD 556 (705)
Q Consensus 491 ~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 556 (705)
..+++.- ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8877651 1112 4567778888888888888888888887765432 446677888888888888888
Q ss_pred HHHHHHHhC
Q 005268 557 EVRSLARDR 565 (705)
Q Consensus 557 ~~~~~m~~~ 565 (705)
+.+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=2.2e-11 Score=120.15 Aligned_cols=229 Identities=9% Similarity=-0.074 Sum_probs=164.9
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHhhhhcCCCCCCccccc
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGTYV 337 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 337 (705)
+.+...+..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|++.|++..+ .+ +...+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~- 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGC- 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHH-
Confidence 446778888999999999999999999876544 66788888888888 8888888888888776 32 22333
Q ss_pred chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh-
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSLFYQVPR-SSSVPWNAIISCHGI- 411 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 411 (705)
..+..+|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 78 ----------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 78 ----------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG 123 (273)
T ss_dssp ----------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcC
Confidence 334444444 5555555555554432 233445566666666
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHh--
Q 005268 412 ---HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR-- 482 (705)
Q Consensus 412 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-- 482 (705)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..+|.+
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCC
Confidence 777788888888877754 45556666666766 78888888888877653 2 34677778888888
Q ss_pred --cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcc
Q 005268 483 --AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 483 --~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
.+++++|+..+++.....+...+..+...+.. .+++++|...++++.+++|+++.
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88999998888876322346778888888888 89999999999999999886543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=9.1e-13 Score=138.65 Aligned_cols=259 Identities=12% Similarity=0.027 Sum_probs=167.4
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCCc-----ccccchhHHhhccCchHHHHHHHHHHHHh----C-CCCchhHHHH
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----C-LCFDVFVATC 373 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~ 373 (705)
...+...|++++|+..|++..+ ..|+. ..+..+...+...|+++.|...+..+++. + .+....++..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHH---hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344444555555555555444 22322 13334444444455555555554444332 1 1123345566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPRS---------SSVPWNAIISCHGIHGQ-----------------GDKALNFFRQMLD 427 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 427 (705)
+...|...|++++|...|++.... ....|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666777777777777776655411 12246777777777788 7888888777654
Q ss_pred c----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005268 428 E----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNMP- 497 (705)
Q Consensus 428 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~- 497 (705)
. +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+...|...|++++|...+++.-
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11222 236777777888899999999988887654211122 2367888889999999999998887661
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 498 ---VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 498 ---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
...+ ..+|..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 4578888889999999999999999998875432 34678899999999999999999998876
Q ss_pred C
Q 005268 565 R 565 (705)
Q Consensus 565 ~ 565 (705)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=6.9e-12 Score=129.16 Aligned_cols=225 Identities=11% Similarity=0.101 Sum_probs=190.5
Q ss_pred ccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCcchHHHHHHHH
Q 005268 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVP---RSSSVPWNAIISCH 409 (705)
Q Consensus 334 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 409 (705)
..|..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345566667788899999999999999874 4467888999999999997 999999999887 45667799999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHh-cCCH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR-AGHL 486 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~ 486 (705)
...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..++.+.+. .| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 4565 568999999999999999999999999864 55 56789999999999 6766
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC-------
Q 005268 487 GMA-----HNFIQNM-PVRP-DASIWGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG------- 550 (705)
Q Consensus 487 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 550 (705)
++| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 3455 5779999999999888 689999999998 899999999999999999875
Q ss_pred --CcchHHHHHHHH-HhC
Q 005268 551 --KWEGVDEVRSLA-RDR 565 (705)
Q Consensus 551 --~~~~a~~~~~~m-~~~ 565 (705)
.+++|.++++.+ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 258999999987 544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.3e-11 Score=117.46 Aligned_cols=207 Identities=13% Similarity=0.054 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 375 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 375 (705)
+...|..+...+...|++++|++.|+++.+ ..|+ +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK---SDPK----------------------------------NELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCcc----------------------------------chHHHHHHH
Confidence 455666777777777777777777777665 3332 233455555
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcH
Q 005268 376 DMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLV 450 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 450 (705)
..|...|++++|...|+++. +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 66666666666666666554 33445567777777778 888888888888877333444 35677777788888888
Q ss_pred HHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 005268 451 SEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR--PDASIWGALLGACRIHGNMELGAVASD 526 (705)
Q Consensus 451 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 526 (705)
++|...++.+.+. .| +...+..++..+.+.|++++|...++++ ... .+...|..+...+...|+.+.+...++
T Consensus 130 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 130 GLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888887754 33 4567788888888889999888888776 222 356677777788889999999999999
Q ss_pred HHhccCCCCcchhhhh
Q 005268 527 RLFEVDSENVGYYVLM 542 (705)
Q Consensus 527 ~~~~~~p~~~~~~~~l 542 (705)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9999999887766554
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2.4e-12 Score=130.83 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=166.6
Q ss_pred HHHHHcCChhHHHHHHHhhhhcCCCCCCc-----ccccchhHHhhccCchHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 005268 305 TGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CLC-FDVFVATCL 374 (705)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l 374 (705)
..+...|++++|+..|+++.+ ..|+. ..+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344444555555555544444 22321 23333444444445555555544443321 111 124455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQ--------------------GDKALNFFRQM 425 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 425 (705)
...|...|++++|...|++..+ .+ ...+..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777766531 11 1246677777777787 78888888776
Q ss_pred HHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 426 LDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 426 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
... +..|. ..++..+...+...|++++|.+.++...+...-.++ ...+..+...|.+.|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11222 236677777888899999999998887653211122 237788888899999999999888776
Q ss_pred C----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchhhhhhhhhhhcCCcchHHHHHHHH
Q 005268 497 P----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLA 562 (705)
Q Consensus 497 ~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 562 (705)
- ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 5577888889999999999999999998875432 346778999999999999999999988
Q ss_pred HhC
Q 005268 563 RDR 565 (705)
Q Consensus 563 ~~~ 565 (705)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 765
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=9.6e-12 Score=114.53 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=117.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHH
Q 005268 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCM 476 (705)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 476 (705)
...|..+...|...|++++|++.|++.++ +.|+ ..++..+..++...|++++|...+...... .| +...+..+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 34466677777777777777777777777 3454 346667777777777777777777776643 33 34556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcch
Q 005268 477 VDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554 (705)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (705)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 67777777777777777665 2233 466777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 005268 555 VDEVRSLARDR 565 (705)
Q Consensus 555 a~~~~~~m~~~ 565 (705)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888877664
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.6e-12 Score=139.13 Aligned_cols=207 Identities=8% Similarity=-0.009 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI-DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
++.+.+.+....+. .+.+...+..+...|...|++ ++|...|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555554433 234677778888888888888 88888888765 34566799999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhc--------CCH
Q 005268 425 MLDEGVRPDHITFVSLLTACSHS---------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA--------GHL 486 (705)
Q Consensus 425 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 486 (705)
.++ +.|+...+..+..++... |++++|.+.|++..+. .| +...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 568888888888899999 9999999999998864 45 467888999999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHH
Q 005268 487 GMAHNFIQNM-PVRP----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 3455 6889999999999999999999999999999999999999999999999999999875543
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=9.4e-10 Score=120.91 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=270.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCC---hHHHHHHHHHHHHhCC-CCchhHH
Q 005268 92 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN---ILSGLLIHLYIVKHGL-EFNLFVS 167 (705)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 167 (705)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+...+ +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 57888999999998899999999999999875 34455567777777777777 9999999999888642 4777788
Q ss_pred HHHHHHHHccCCH--------HHHHHHHhccC------CC-CeehHHHHHHHHHc---------CCChhhHHHHHHHHHH
Q 005268 168 NNLINMYAKFGMM--------RHALRVFDQMM------ER-DVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQ 223 (705)
Q Consensus 168 ~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 223 (705)
...+....+.++. +...++|+... .+ +...|...+.-... +++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555543 33446776532 22 33467777754432 3345677788887764
Q ss_pred CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhc-------CC---
Q 005268 224 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-------LP--- 293 (705)
Q Consensus 224 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~--- 293 (705)
.....-..+|.....--... +...++.+.... ...++.|...+.+ +.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~----------------------~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL----------------------SAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH----------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 21111112222111111111 111122221111 0112222222221 11
Q ss_pred -C----------C--C------hhHHHHHHHHHHHcCC-------hhHHHHHHHhhhhcCCCCC-CcccccchhHHhhcc
Q 005268 294 -V----------K--D------VISWNTLITGYAQNGL-------ASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHV 346 (705)
Q Consensus 294 -~----------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~ 346 (705)
. | + ...|...+.---.++. .+.+..+|++... ..| +...|.....-+...
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~---~~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ---HVCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHH
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHhc
Confidence 0 0 0 2346666654443331 2345667888776 334 445555666666777
Q ss_pred CchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC------------cc
Q 005268 347 GALRQGI-KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------------SS------------SV 400 (705)
Q Consensus 347 ~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------~~------------~~ 400 (705)
|+.+.|. .+++.++.. ++.+...+-.++...-+.|++++|.++|+++.. |+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888896 999999875 456777788889999999999999999998763 21 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSH-SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
.|-..+....+.|..+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.++ -+...+...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHH
Confidence 4888888888889999999999999985 2 1223334333222223 3558999999999987643 34456778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 005268 479 LFGRAGHLGMAHNFIQNMP-VRP----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
.....|+.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8899999999999999873 223 3568999999999999999999999999999997753
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=8.7e-12 Score=130.61 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cc
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LK 471 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 471 (705)
.|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 356666677777777777777777665210 112 126667777788888888888888776643211111 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCcc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDS------ENVG 537 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 537 (705)
.+..+...|.+.|++++|...+++.- ..++ ..++..+...+...|++++|...+++++++.+ ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 67778888888899888888887651 1122 55778888899999999999999999887633 2345
Q ss_pred hhhhhhhhhhhcCCcch
Q 005268 538 YYVLMSNIYANVGKWEG 554 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~ 554 (705)
++..++.+|...|+...
T Consensus 349 ~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhHhHH
Confidence 66778888888887643
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2.6e-11 Score=111.57 Aligned_cols=166 Identities=10% Similarity=0.008 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 442 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 442 (705)
+..+|..+...|.+.|++++|...|++.. +.+...|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788889999999999999999999876 456667999999999999999999999999885 444 456777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 519 (705)
.+...++++.+.+.+....+. .| +...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999988754 44 5678888999999999999999999887 3444 5789999999999999999
Q ss_pred HHHHHHHHHhccCCCCcc
Q 005268 520 LGAVASDRLFEVDSENVG 537 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~ 537 (705)
+|+..++++++++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 999999999999997654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.5e-10 Score=116.39 Aligned_cols=218 Identities=11% Similarity=0.115 Sum_probs=155.5
Q ss_pred hHHHHHHHhhhhcCCCCCC-cccccchhHHhh-------ccCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005268 314 SEAIEVFQMMEECNEINPN-QGTYVSILPAYS-------HVGAL-------RQGIKIHARVIKNCLCFDVFVATCLVDMY 378 (705)
Q Consensus 314 ~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y 378 (705)
++|...|++... ..|+ ...|......+. ..|++ ++|..+++++++.-.+.+...+..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456666666665 4443 233444444333 24554 77888888877732234566788888888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHH
Q 005268 379 GKCGRIDDAMSLFYQVPR--S-SSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEG 453 (705)
Q Consensus 379 ~k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a 453 (705)
.+.|++++|..+|++..+ + +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888889888887652 2 333 68888888888899999999999998843 23334454433332 236899999
Q ss_pred HHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 005268 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRP--DASIWGALLGACRIHGNMELGAVASDR 527 (705)
Q Consensus 454 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 527 (705)
.++|+...+.. +-+...|..+++.+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998887652 2255788888889999999999999998872 244 366888889988999999999999999
Q ss_pred HhccCCCCcc
Q 005268 528 LFEVDSENVG 537 (705)
Q Consensus 528 ~~~~~p~~~~ 537 (705)
+++..|+++.
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 9999987653
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=1.4e-11 Score=129.62 Aligned_cols=196 Identities=10% Similarity=0.027 Sum_probs=129.7
Q ss_pred chhHHhhccCchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhhCC
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKN----C-LCFDVFVATCLVDMYGKCGR-----------------IDDAMSLFYQVP 395 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~~~~~~ 395 (705)
.+...+...|+++.|...+..+++. + .+....++..+...|...|+ +++|...|++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 3334444444444444444443332 1 01123455566666667777 677766665543
Q ss_pred C-----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 396 R-----S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 396 ~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
. . ....|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.+.++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1 1 123477788888888888888888888876311 012 1267778888999999999999998876
Q ss_pred HhhCCcC----CcchHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 462 EEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-V---RPD----ASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 462 ~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
+...-.. ....+..+...|.+.|++++|...+++.- . .++ ..++..+...+...|++++|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5421111 14577888899999999999999988762 1 112 4477888899999999999999999998
Q ss_pred ccCC
Q 005268 530 EVDS 533 (705)
Q Consensus 530 ~~~p 533 (705)
++.+
T Consensus 371 ~~~~ 374 (411)
T 4a1s_A 371 QLAX 374 (411)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8765
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.4e-11 Score=135.24 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-cchHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVD 478 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 478 (705)
.|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. .|+ ...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 466666666667777777777777766 45553 46666667777777777777777766643 443 456777777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHH
Q 005268 479 LFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 556 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 556 (705)
+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777777665 33443 5677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHh
Q 005268 557 EVRSLARD 564 (705)
Q Consensus 557 ~~~~~m~~ 564 (705)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=4.1e-11 Score=121.61 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 472 (705)
+..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 45555555666666666666665554210 011 125566666777777777777777766543111111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
+..+...|...|++++|...++++- ..++ ..+|..+...+...|++++|...+++++++.+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777778888888888877776651 1112 446778888889999999999999998887663
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=3.5e-10 Score=117.59 Aligned_cols=164 Identities=11% Similarity=0.134 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCc----chHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-H
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPR-----SSS----VPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-H 434 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 434 (705)
.+++.+...|...|++++|...|++..+ .+. .+|+.+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3556666777777777777777765541 111 24677778888888888888888877762 22243 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGRAGH---LGMAHNFIQNMPVRPD-ASIWGA 507 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ 507 (705)
.++..+..++...|++++|...++...+...-.++ ...+..+...|...|+ +++|+.++++....|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56777778888888888888888876643211112 2235567777777787 7788888877754443 335666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccC
Q 005268 508 LLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
+...|...|++++|...+++++++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777776643
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=6.3e-09 Score=114.37 Aligned_cols=436 Identities=9% Similarity=-0.018 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC---HHHHHH
Q 005268 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALR 185 (705)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~ 185 (705)
...+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.+++. ++.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666666666554 457888999999988888999999999999887 45677788888888888888 999999
Q ss_pred HHhccCC-----CCeehHHHHHHHHHcCCCh----hh----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHHHc-------
Q 005268 186 VFDQMME-----RDVVSWNSIIAAYEQSNDP----IT----AHGFFTTMQQ-AGI-QPDL-LTLVSLTSIVAQ------- 242 (705)
Q Consensus 186 ~f~~m~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~------- 242 (705)
+|++... |++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.-...
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9987754 5666777766554444432 22 3355555432 355 4543 234333333221
Q ss_pred --cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 005268 243 --LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 320 (705)
Q Consensus 243 --~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 320 (705)
.+..+.++.+|..++... ...-..+|......-...+. ..+.++ +.- ...+++.|...+
T Consensus 205 eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHH
Confidence 123444555555554321 11111222221111100000 001111 110 011233344444
Q ss_pred Hhhhhc-CCC---CCCc--------------------ccccchhHHhhccC-------chHHHHHHHHHHHHhCCCCchh
Q 005268 321 QMMEEC-NEI---NPNQ--------------------GTYVSILPAYSHVG-------ALRQGIKIHARVIKNCLCFDVF 369 (705)
Q Consensus 321 ~~m~~~-~~~---~p~~--------------------~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~ 369 (705)
.++... .++ -|.. ..|...+.---..+ ..+....+|++++.. ++.+..
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHH
Confidence 443210 011 1110 00111111111111 123455678888776 455778
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC---
Q 005268 370 VATCLVDMYGKCGRIDDAM-SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---------RPD--- 433 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~--- 433 (705)
+|-..+..+.+.|+.++|. .+|++.. +.+...|-..+....+.|++++|.++|++++.... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888899999996 9998776 34445588888889999999999999999987410 142
Q ss_pred ---------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCC
Q 005268 434 ---------HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-HLGMAHNFIQNM--PVRPD 501 (705)
Q Consensus 434 ---------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~ 501 (705)
...|...+....+.|.++.|+.+|....+.. -.+....|...+.+-.+.| +.+.|..+|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2357777777788899999999999987641 1223345554444445555 589999999877 23346
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
...|...+......|+.+.|..+|++++...|+ ....+...+..-...|..+.+.++.+++.+.-.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 778889999888999999999999999998873 334566677777788999999999999987643
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=3e-11 Score=125.72 Aligned_cols=224 Identities=9% Similarity=-0.016 Sum_probs=164.1
Q ss_pred HHhhccCchHHHHHHHHHHHHh--CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCC----C-CC-----cchHHHH
Q 005268 341 PAYSHVGALRQGIKIHARVIKN--CLCF---DVFVATCLVDMYGKCGRIDDAMSLFYQVP----R-SS-----SVPWNAI 405 (705)
Q Consensus 341 ~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~-~~-----~~~~~~l 405 (705)
..+...|+++.|...+..+.+. ..+. ...++..+...|...|++++|...+++.. + .+ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566777777777666553 1111 24567778888888899888888877654 1 11 2348888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCcC-CcchHHHH
Q 005268 406 ISCHGIHGQGDKALNFFRQMLDEGV-RPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCM 476 (705)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l 476 (705)
...|...|++++|++.|++.++... .++. .++..+...|...|++++|.+.++...+.. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999999999886311 1221 378888889999999999999999887521 2213 34678889
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-C-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 477 VDLFGRAGHLGMAHNFIQNMP-V-----RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~-~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
...|.+.|++++|...+++.- . .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 999999999999999998762 1 222 2235667778888888 77888888776 33444556788899999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 005268 547 ANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~ 565 (705)
...|++++|...+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=9.9e-12 Score=124.90 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcC------CCCCCcccccchhHHhhccCchHHHHHHHHHHHHh------C
Q 005268 296 DVISWNTLITGYAQNGLASEAIEVFQMMEECN------EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN------C 363 (705)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g 363 (705)
+..+|..+...|...|++++|+..|+++.+.. ........+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34678888889999999999999998887610 01112233444555555566666666665555443 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HH
Q 005268 364 L-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE------GVRPD-HI 435 (705)
Q Consensus 364 ~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~ 435 (705)
- +....++..+...|...|++++|...| +++.+. +-.|+ ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHH
Confidence 1 112334444445555555555555544 444432 11121 12
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhh-----CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP----------VR 499 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~ 499 (705)
.+..+...+...|++++|.++++.+.+.. +..| ....+..+...|.+.|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34444444555555555555555443321 0011 12344445555555555555555554431 00
Q ss_pred CC-------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 500 PD-------ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 500 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
|. ...+..+...+...+.+.++...+++.....|..+..+..++.+|...|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 111122222333444555556666666666666666677777777777777777777766654
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=6.9e-10 Score=101.61 Aligned_cols=167 Identities=11% Similarity=-0.043 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 445 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 445 (705)
..+..+...|...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556677778888888888888888763 344557777788888888888888888887742 334556677777777
Q ss_pred ccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 005268 446 HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAV 523 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~ 523 (705)
..|++++|.++++.+.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888777653 1224455666666667777777777666655 11 2245566666666666777777777
Q ss_pred HHHHHhccCCCCcch
Q 005268 524 ASDRLFEVDSENVGY 538 (705)
Q Consensus 524 ~~~~~~~~~p~~~~~ 538 (705)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 777766666655443
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=1.7e-10 Score=123.33 Aligned_cols=178 Identities=11% Similarity=-0.009 Sum_probs=155.6
Q ss_pred HHHHHHHHhhCC---CCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 005268 384 IDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG-DKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFH 458 (705)
Q Consensus 384 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 458 (705)
++++...++... ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555666665543 34556689999999999999 9999999999994 565 5789999999999999999999999
Q ss_pred HhHHhhCCcCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChh
Q 005268 459 MMQEEFGIKPHLKHYGCMVDLFGRA---------GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH--------GNME 519 (705)
Q Consensus 459 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 519 (705)
... .+.|+...+..+...|.+. |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887 4578888899999999999 9999999999987 3344 588999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 520 LGAVASDRLFEVDS---ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 520 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+|+..++++++++| +++..+..++.+|...|++++|.+.++++.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999988753
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=4.1e-10 Score=107.55 Aligned_cols=202 Identities=6% Similarity=-0.010 Sum_probs=114.5
Q ss_pred cccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHH
Q 005268 333 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCH 409 (705)
Q Consensus 333 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 409 (705)
+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++.. +.+...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 344555555666666777777777666665433455555556666666666666666666554 22333466666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC---cchHHHHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPD-H-------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVD 478 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~ 478 (705)
...|++++|+..|++.++. .|+ . ..|..+...+...|++++|.+.|+... .+.|+ ...|..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 6666666666666666663 343 2 234445555566666666666666554 23443 344555555
Q ss_pred HHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 479 LFGRAGHL--GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 479 ~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
.|...|+. ++|..+. ..+...+..+. ....+++++|+..++++++++|+++.....+..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55444432 2221111 11222222222 23344568899999999999998887776666543
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=5.5e-09 Score=104.84 Aligned_cols=209 Identities=11% Similarity=0.035 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-------cCCH-------HHHHHHHhcCC----CCChhHHHHHHHHHHH
Q 005268 248 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK-------LGII-------NSACAVFEGLP----VKDVISWNTLITGYAQ 309 (705)
Q Consensus 248 ~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~-------~g~~-------~~A~~~f~~~~----~~~~~~~~~li~~~~~ 309 (705)
.+..+++.+++. .+.++.+|..++..+.. .|++ ++|..+|++.. +.+...|..++..+.+
T Consensus 34 ~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 344455555554 35666667666666653 4664 67777776532 2355577777777777
Q ss_pred cCChhHHHHHHHhhhhcCCCCCCcc--cccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcCCHHH
Q 005268 310 NGLASEAIEVFQMMEECNEINPNQG--TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG-KCGRIDD 386 (705)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-k~g~~~~ 386 (705)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|+++.|..+++.+++... .+..++........ ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776 555432 455555555556666666666666655421 22233322222211 2355555
Q ss_pred HHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 005268 387 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPD--HITFVSLLTACSHSGLVSEGQRYFHMM 460 (705)
Q Consensus 387 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 460 (705)
|..+|++.. +.+...|..++..+.+.|++++|..+|++.+... +.|+ ...|..++......|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555443 2233345555555555555555555555555532 2332 234444444455555555555555555
Q ss_pred HH
Q 005268 461 QE 462 (705)
Q Consensus 461 ~~ 462 (705)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=2.3e-10 Score=104.84 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 480 (705)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 36778888999999999999999998742 335678888888999999999999999998864 233567888899999
Q ss_pred HhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHH
Q 005268 481 GRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 558 (705)
...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999887 2 3346788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 005268 559 RSLARDRG 566 (705)
Q Consensus 559 ~~~m~~~~ 566 (705)
++.+.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99987653
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=122.20 Aligned_cols=242 Identities=11% Similarity=0.081 Sum_probs=151.0
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcC---
Q 005268 262 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--------K---DVISWNTLITGYAQNGLASEAIEVFQMMEECN--- 327 (705)
Q Consensus 262 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 327 (705)
.+.+..++..+...|...|++++|..+|++... . ...++..+...|...|++++|+..|++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999987653 2 34578889999999999999999999987611
Q ss_pred --CCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005268 328 --EINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNC------LCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 397 (705)
Q Consensus 328 --~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 397 (705)
+-.| ...++..+...+...|++++|...+..+++.. ..| ...++..+...|.+.|++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~------------- 169 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY------------- 169 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-------------
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-------------
Confidence 1223 34567788888999999999999999887641 111 223344444445455554
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhh------
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDE------GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEF------ 464 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------ 464 (705)
++|++.|+++.+. +-.|+. .++..+..++...|++++|.++++.+.+..
T Consensus 170 ------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 170 ------------------EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455444444442 112222 345555566666666666666666655321
Q ss_pred CCcCCc-ch------HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 005268 465 GIKPHL-KH------YGCMVDLFGRAGHLGMAHNFIQNMP-VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSE 534 (705)
Q Consensus 465 ~~~p~~-~~------~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (705)
...+.. .. +..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111111 11 2222333444555556666666653 233 3568899999999999999999999999988774
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=4.7e-10 Score=107.16 Aligned_cols=187 Identities=12% Similarity=-0.036 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---R-SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLL 441 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 441 (705)
|+..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|+..|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44555556666666666666666666544 2 4444455566666666666666666666665 34443 3555555
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcCC-c-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKPH-L-------KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALL 509 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll 509 (705)
.++...|++++|.+.++...+. .|+ . ..|..+...+.+.|++++|++.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666665543 332 2 23555555556666666666666554 33444 23444454
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
..+.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 44433 23334455555544443333222 223345558888888887765
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=5.4e-09 Score=108.07 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHH
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR--P--DHI 435 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 435 (705)
+..+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566667777777777777765531 1 1123556677778888888888888887764221 1 124
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-----CMVDLFGRAGHLGMAHNFIQNMP-VRPD-----ASI 504 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 504 (705)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566677778888888888888887765422111111222 23344778899999999888873 2221 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+..+...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++.....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788888899999999998887654321 135667788889999999999888877653
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=2.2e-09 Score=111.32 Aligned_cols=221 Identities=10% Similarity=-0.028 Sum_probs=134.0
Q ss_pred hhccCchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----cchHHHHHH
Q 005268 343 YSHVGALRQGIKIHARVIKNC--LC---FDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SS-----SVPWNAIIS 407 (705)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 407 (705)
+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++... .+ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666666555431 11 1234556666677777777777666655431 11 223667777
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCcCCcchHHHHHHH
Q 005268 408 CHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVDL 479 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~ 479 (705)
.|...|++++|++.|++.++. +-.+. ..++..+..++...|++++|.+.++...+.. +.+.....+..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777778888888777776652 11111 2356667777778888888888887766511 112224566777778
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 480 FGRAGHLGMAHNFIQNM----PV--RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|+....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888877665 11 122 2344555555556666 66666666652 22233445566788888888
Q ss_pred CCcchHHHHHHHHHh
Q 005268 550 GKWEGVDEVRSLARD 564 (705)
Q Consensus 550 g~~~~a~~~~~~m~~ 564 (705)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=8.2e-10 Score=122.90 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=141.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 442 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 442 (705)
+...++.|...|.+.|++++|++.|++.. ..+...|+.+...|.+.|++++|++.|++.++ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56778889999999999999999998876 44566799999999999999999999999999 5676 468999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 519 (705)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988754 56 4578999999999999999999999887 45564 778999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 005268 520 LGAVASDRLFEVDSE 534 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~ 534 (705)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999887553
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1.1e-09 Score=109.13 Aligned_cols=200 Identities=8% Similarity=-0.020 Sum_probs=137.1
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChHHH
Q 005268 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQGDKA 418 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 418 (705)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 3356677887777777765541 11 34578888888888999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHH
Q 005268 419 LNFFRQMLDEGV---RPD--HITFVSLLTACSHS-GLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGM 488 (705)
Q Consensus 419 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 488 (705)
+..|++.++... .+. ..++..+..+|... |++++|+..|++..+...-..+ ...+..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 988888876311 111 24778888889886 9999999999988754211111 3468888999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----hhhhhhhhh--hcCCc
Q 005268 489 AHNFIQNM-PVRPD---A-----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY-----YVLMSNIYA--NVGKW 552 (705)
Q Consensus 489 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 552 (705)
|+..+++. ...|+ . ..|..+...+...|++++|+..+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999886 22232 1 156778888999999999999999999999976543 233555553 45677
Q ss_pred chHHHHHHHH
Q 005268 553 EGVDEVRSLA 562 (705)
Q Consensus 553 ~~a~~~~~~m 562 (705)
++|...++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 7777776543
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=5.1e-08 Score=100.94 Aligned_cols=229 Identities=8% Similarity=0.049 Sum_probs=159.2
Q ss_pred HHHHHHcCChhHHHHHHHhhhhcCCCCCC----cccccchhHHhhccCchHHHHHHHHHHHHhC--C---C-CchhHHHH
Q 005268 304 ITGYAQNGLASEAIEVFQMMEECNEINPN----QGTYVSILPAYSHVGALRQGIKIHARVIKNC--L---C-FDVFVATC 373 (705)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~---~-~~~~~~~~ 373 (705)
...+...|++++|+..|++..+...-.++ ..++..+...+...|+++.|...+..+++.. . . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33455667777777777666541111122 2344555566666777777777766665431 1 1 12446677
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPDHITFVSL 440 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 440 (705)
+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|++.|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 88888888998888888876542 12 234778888999999999999999988871 222225678888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCcCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 005268 441 LTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGRAGH---LGMAHNFIQNMPVRPD-ASIWGALLGACR 513 (705)
Q Consensus 441 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~ 513 (705)
..++.+.|++++|..+++...+...-.++ ...+..+...|...|+ +++|+..+++....|+ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88999999999999999988765322222 2346667777888888 9999999998764444 346678889999
Q ss_pred hcCChhHHHHHHHHHhccC
Q 005268 514 IHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~ 532 (705)
..|++++|...++++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=1e-07 Score=98.31 Aligned_cols=192 Identities=12% Similarity=-0.001 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-------CC----ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCC--C--Cc
Q 005268 269 GNAVVDMYAKLGIINSACAVFEGLP-------VK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN--P--NQ 333 (705)
Q Consensus 269 ~~~li~~y~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--p--~~ 333 (705)
...+...|...|++++|...+++.. .+ ....+..+...+...|++++|...+++... .... | ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHH
Confidence 4455666666677766666665432 11 123445566666777777777777776654 1110 1 01
Q ss_pred ccccchhHHhhccCchHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCcc-------
Q 005268 334 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV-FVAT-----CLVDMYGKCGRIDDAMSLFYQVPRSSSV------- 400 (705)
Q Consensus 334 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~k~g~~~~A~~~~~~~~~~~~~------- 400 (705)
.++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++....+..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 22334444555666666666666665543111110 1111 2233455667777777766666532211
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
.+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2344555566666666666666655442 1111111 33333444555555555555555443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=1.5e-09 Score=106.95 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDE------G 429 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 429 (705)
...++..+...|...|++++|...|++... + ....|..+...|...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345566666777777777777776665441 1 1233666777777777777777777777653 1
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-----CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 005268 430 VRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP----- 497 (705)
Q Consensus 430 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 497 (705)
-.|+ ..++..+...+...|++++|..+++.+.+.. +-.| ....+..+...|.+.|++++|...++++-
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 3466667777777888888888777766431 0022 23566777777888888888877776551
Q ss_pred -----CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 498 -----VRPD-ASIWGALLGACRIHGN------MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 498 -----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
..|. ...|..+.......+. +..+...++......|..+..+..++.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2334444433333332 22333333333334455566777888888888998888888887765
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=5.2e-09 Score=104.06 Aligned_cols=212 Identities=10% Similarity=-0.036 Sum_probs=133.6
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHH
Q 005268 281 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 360 (705)
Q Consensus 281 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 360 (705)
++++|...|++ ....|...|++++|++.|.+..+ +.+ +.|+..
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~---~~~-------------~~~~~~---------- 74 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAAD---YQK-------------KAGNED---------- 74 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHH---HHH-------------HTTCHH----------
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH---HHH-------------HhCCHH----------
Confidence 46777666544 36667777888888877777655 110 000000
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 005268 361 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIH-GQGDKALNFFRQMLDEGV 430 (705)
Q Consensus 361 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 430 (705)
....+++.+..+|.+.|++++|...|++... .+ ...|+.+...|... |++++|+..|++.++.
T Consensus 75 -----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-- 147 (292)
T 1qqe_A 75 -----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-- 147 (292)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--
Confidence 0123444455555555555555555544431 11 23467788888886 8999999998888773
Q ss_pred CCC-------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005268 431 RPD-------HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYGCMVDLFGRAGHLGMAHNFIQNM-P 497 (705)
Q Consensus 431 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~ 497 (705)
.|+ ..++..+...+...|++++|...|+...+...-.+.. ..|..++.++...|++++|...+++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2467788888999999999999999887642111121 14677788888999999999999887 4
Q ss_pred CCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCc
Q 005268 498 VRPDAS------IWGALLGACR--IHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 498 ~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
+.|+.. .+..++.++. ..+++++|+..|+++..++|.+.
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 455422 3445556664 34668888888888888888553
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=8.1e-09 Score=100.80 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---C---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---S---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD-HITFV 438 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 438 (705)
+...+-.+...+.+.|++++|...|+++... + ...|..+..+|.+.|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4555566667777778888888888776532 2 33466677777778888888888888777421 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005268 439 SLLTACSH--------SGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL 509 (705)
Q Consensus 439 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 509 (705)
.+..++.. .|++++|...|+.+.+. .|+. .....+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55566666 77777777777777654 3432 2222221111110011 11246678
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCc---chhhhhhhhhhhc----------CCcchHHHHHHHHHhCCCccCCceeEE
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANV----------GKWEGVDEVRSLARDRGLKKTPGWSSI 576 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 576 (705)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++.+.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999854 4678899999877 899999999999887532
Q ss_pred EECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHh
Q 005268 577 EVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 611 (705)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 611 (705)
.+|...+....+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666666666666654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=8.4e-10 Score=97.50 Aligned_cols=138 Identities=8% Similarity=-0.000 Sum_probs=93.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCH
Q 005268 409 HGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 409 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 486 (705)
+...|++++|++.+++... ..|+. ..+..+...|...|++++|++.|+...+. .| +...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3445556666666665544 23332 24445556666666666666666666543 44 345666677777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCcchhhhhhhhhhhcCC
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVA-SDRLFEVDSENVGYYVLMSNIYANVGK 551 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (705)
++|+..|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3345 467888888889999988766554 589999999999998888888877775
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=1.3e-08 Score=99.31 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=141.4
Q ss_pred CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---cchH
Q 005268 332 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVPR--S-S---SVPW 402 (705)
Q Consensus 332 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~ 402 (705)
+...+......+...|++++|...++.+++... .+ ...+..+..+|.+.|++++|...|++... | + ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344556667778899999999999999988642 23 56778889999999999999999998863 2 2 2347
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchH
Q 005268 403 NAIISCHGI--------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY 473 (705)
Q Consensus 403 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 473 (705)
..+..++.. .|++++|+..|++.++. .|+.. ....+ ..+...... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999984 46542 22111 111111110 01135
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCcch
Q 005268 474 GCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIH----------GNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999888876 22333 44677777777765 88899999999999999988643
Q ss_pred ---hhhhhhhhhhcCCcc
Q 005268 539 ---YVLMSNIYANVGKWE 553 (705)
Q Consensus 539 ---~~~l~~~~~~~g~~~ 553 (705)
...+..++...|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334555554444443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=6.2e-08 Score=94.51 Aligned_cols=175 Identities=9% Similarity=0.015 Sum_probs=126.9
Q ss_pred HHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 387 AMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 387 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666552 34445667778888889999999999888775532343 4667777888899999999999988875
Q ss_pred hhCCcC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 005268 463 EFGIKP-----HLKHYGCMVDL--FGRAG--HLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEV- 531 (705)
Q Consensus 463 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 531 (705)
. .| +..+...|+.+ ....| +.++|..+|+++. ..|+..+-..|++++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 56 24455555555 33334 8999999998883 3355333344555888999999999999988776
Q ss_pred ---------CCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 532 ---------DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 532 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+|+|+.++..++.+....|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888777777777886 8889999888763
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.4e-08 Score=83.91 Aligned_cols=130 Identities=16% Similarity=0.245 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 480 (705)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++.+.+. . +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 35566667777777777777777777642 224455666666667777777777777766543 1 12233445555555
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 481 GRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 11 12344555555555555555555555555555554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=5e-08 Score=92.71 Aligned_cols=179 Identities=9% Similarity=-0.045 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-c---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHH
Q 005268 369 FVATCLVDMYGKCGRIDDAMSLFYQVPR--SS-S---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----TFV 438 (705)
Q Consensus 369 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 438 (705)
..+..+...+.+.|++++|...|+++.. |+ . ..+..+..+|.+.|++++|+..|++.++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877652 22 1 24666777788888888888888888774 34321 333
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHhHHhhCCcCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005268 439 SLLTACSH------------------SGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVR 499 (705)
Q Consensus 439 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (705)
.+..++.. .|+.++|...|+.+.+. .|+.. .+..+.. .+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH---------
Confidence 33333332 34555555555555432 33221 1111100 00000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 500 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999876 5688899999999999999999999887754
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=8.3e-09 Score=91.03 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=102.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 516 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 516 (705)
|...+...|++++|+..++... ...| +...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445677889999999888765 3445 3456678899999999999999999987 4455 5789999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHH-HHHHHhC
Q 005268 517 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV-RSLARDR 565 (705)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 565 (705)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988765 4777664
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.1e-08 Score=114.50 Aligned_cols=169 Identities=11% Similarity=-0.066 Sum_probs=137.6
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 005268 379 GKCGRIDDAMSLFYQVP-----------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH 446 (705)
Q Consensus 379 ~k~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 446 (705)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.++. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788999998888765 445566888889999999999999999999984 454 4678888888999
Q ss_pred cCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAV 523 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 523 (705)
.|++++|.+.|++..+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988754 55 45788889999999999999 8888877 3444 57789999999999999999999
Q ss_pred HHHHHhccCCCCcchhhhhhhhhhhcCCcc
Q 005268 524 ASDRLFEVDSENVGYYVLMSNIYANVGKWE 553 (705)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (705)
.++++++++|++..++..++.+|...|+.+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999988777633
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=6.3e-08 Score=95.15 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDE------GV 430 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 430 (705)
..++..+...|...|++++|...|++... + ....|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556666666677777777666665531 1 1233677777888888888888888888764 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh------CCcCC-cchHHHHHHHHHhcC------CHHHHHHHHHhC
Q 005268 431 RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF------GIKPH-LKHYGCMVDLFGRAG------HLGMAHNFIQNM 496 (705)
Q Consensus 431 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~ 496 (705)
.|+ ..++..+..++...|++++|.++++...+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3477788888999999999999998877531 11222 234444444443333 345555555555
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 005268 497 P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 531 (705)
Q Consensus 497 ~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 531 (705)
. ..|+ ..+|..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 2233 457888999999999999999999998875
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=3e-08 Score=98.22 Aligned_cols=162 Identities=9% Similarity=-0.061 Sum_probs=124.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHH
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 475 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 475 (705)
.+...+..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++.+.. ..|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~ 189 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGL 189 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHH
Confidence 3344455666777788888888888888888 4564 45777777888888999999888887753 3555433322
Q ss_pred HH-HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchhhhhhhhhhhcC
Q 005268 476 MV-DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANVG 550 (705)
Q Consensus 476 li-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g 550 (705)
.. ..+.+.|+.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ +..+..|+.+|...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22 2366777788888877766 2344 57789999999999999999999999999999987 778999999999999
Q ss_pred CcchHHHHHHHHH
Q 005268 551 KWEGVDEVRSLAR 563 (705)
Q Consensus 551 ~~~~a~~~~~~m~ 563 (705)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998877654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=2.8e-08 Score=85.15 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=112.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACR 513 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~ 513 (705)
.+..+...+...|++++|..+++.+.+. . +.+...+..++..+.+.|++++|...++++ . .+.+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4567778889999999999999998764 1 235667888999999999999999999887 2 2345778999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
..|++++|...++++++..|+++..+..++.+|...|++++|...++.+.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999987653
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=2.2e-07 Score=90.65 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005268 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS-----SSVPWNAIISCHGIHGQGDKALNFFRQML 426 (705)
Q Consensus 352 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (705)
+...++..+..+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666665554 344555567888899999999999999887433 34447778889999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005268 427 DEGVRP-----DHITFVSLLTA--CSHSG--LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 497 (705)
Q Consensus 427 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 497 (705)
+ ..| +..+...+..+ ....| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35666666665 33334 899999999998754 4543333444558889999999999987652
Q ss_pred -C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 498 -V----------RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 498 -~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
. .| |+.+.-.++......|+ +|.++++++.+..|++|..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 24 45566566666667786 8899999999999988754
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=3.6e-08 Score=89.59 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=59.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 489 AHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 489 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
|...+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...++....
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44445444 2344 47788888889999999999999999999999864 45788899999999999999988877654
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=2.1e-07 Score=87.34 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=124.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhHHhhCCcCCcch
Q 005268 397 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG----LVSEGQRYFHMMQEEFGIKPHLKH 472 (705)
Q Consensus 397 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 472 (705)
.+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + +.++|.++|+...+. | +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 344556666666777778888888888887755 45566666666766 6 788888888877643 2 4557
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchhh
Q 005268 473 YGCMVDLFGR----AGHLGMAHNFIQNMP-VRPD---ASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 473 ~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
+..|..+|.. .+++++|++.|++.- ..|+ +..+..|...|.. .++.++|...++++.++ |+++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 789999999998874 3342 7788888888888 78999999999999988 66778889
Q ss_pred hhhhhhhhc-C-----CcchHHHHHHHHHhCCC
Q 005268 541 LMSNIYANV-G-----KWEGVDEVRSLARDRGL 567 (705)
Q Consensus 541 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 567 (705)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999988764
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.2e-07 Score=95.01 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=152.0
Q ss_pred cCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005268 310 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 389 (705)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 389 (705)
.|++++|.+++++..+ ..+.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k---~~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK---YLKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHH---HHCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHH---Hcccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888887765 22211 1 11146777777776654 446777888888888
Q ss_pred HHhhCCC-----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHH
Q 005268 390 LFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---RPD--HITFVSLLTACSHSGLVSEGQR 455 (705)
Q Consensus 390 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 455 (705)
.|.+... .+ ...|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8776541 11 23488888999999999999999998876311 122 2467788888888 99999999
Q ss_pred HHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 005268 456 YFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAV 523 (705)
Q Consensus 456 ~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~ 523 (705)
.|++..+.+.-..+ ...+..+...|.+.|++++|+..+++.- ..++ ...|..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988754211111 3578888999999999999999998762 1122 2366677777888899999999
Q ss_pred HHHHHhccCCCCcch-----hhhhhhhhhhcCCcchHHH
Q 005268 524 ASDRLFEVDSENVGY-----YVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 524 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 557 (705)
.+++.+ ++|+.... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99975543 23344444 4566555544
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=1.6e-07 Score=87.90 Aligned_cols=125 Identities=9% Similarity=0.014 Sum_probs=94.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHh
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR 482 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 482 (705)
+...|.+.|++++|+..|++.++ +.|+ ...+..+..++...|++++|...|+...+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 88888899999999999999998 4565 467888888899999999999999988754 55 45678888888766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 483 AGH--LGMAHNFIQNMPVRPDA--SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 483 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
.|. .+++...+++.. .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 3443 345556667778899999999999999999953
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.6e-07 Score=105.06 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=145.3
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhc
Q 005268 344 SHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH 412 (705)
Q Consensus 344 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 412 (705)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888988888887 32 24466778888899999999999999999877 45666789999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAH 490 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 490 (705)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 4565 4688888889999999999 9999988754 55 4568889999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCcch
Q 005268 491 NFIQNM-PVRPD-ASIWGALLGACRIHGN-----MELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 491 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 538 (705)
+.|+++ ...|+ ...|..+..++...++ .+...++.+.+..+.++++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999998 46676 5678778777766555 244444445555555544443
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=3.7e-08 Score=86.55 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=88.3
Q ss_pred CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhh
Q 005268 465 GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 541 (705)
Q Consensus 465 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (705)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 3456777788888889999999888877 3345 58899999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 542 MSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 542 l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=9.3e-08 Score=104.89 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=124.1
Q ss_pred cCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 005268 381 CGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRY 456 (705)
Q Consensus 381 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 456 (705)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998873 3456699999999999999999999999998 4565 56888888999999999999999
Q ss_pred HHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 005268 457 FHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNMELGAVASDRLFE 530 (705)
Q Consensus 457 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 530 (705)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998864 45 4678899999999999999999999887 3344 577899999999999 999999999999999
Q ss_pred cCCCCcchhhhhh
Q 005268 531 VDSENVGYYVLMS 543 (705)
Q Consensus 531 ~~p~~~~~~~~l~ 543 (705)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=3.4e-08 Score=86.77 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=84.7
Q ss_pred CcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhh
Q 005268 466 IKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 466 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 3456667778888888888888888876 2334 678899999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcchHHHHHHHHHhC
Q 005268 543 SNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 543 ~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.+|...|++++|.+.++...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=2.1e-07 Score=102.00 Aligned_cols=145 Identities=10% Similarity=-0.011 Sum_probs=107.4
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 005268 346 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 422 (705)
Q Consensus 346 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 422 (705)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477889999999887753 3457788889999999999999999998876 344566888999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 005268 423 RQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA---GHLGMAHNFIQNM 496 (705)
Q Consensus 423 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 496 (705)
++..+. .|+ ...+..+..++...|++++|.+.++...+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999984 454 568888889999999999999999988764 44 456788899999999 9999999999877
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=5.3e-08 Score=97.49 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=150.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005268 345 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
..|++++|.++++++.+.... . .+...+++++|...|.+ ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357888999999888765221 1 11115889999888765 36778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc--C--CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 425 MLDEGV---RP-D-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--P--HLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 425 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
..+... .| . ..+|..+...|...|++++|...|+...+.+.-. | ...++..+..+|.+ |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 2478888889999999999999999876542111 1 13577888899988 999999999987
Q ss_pred CC-CC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hhhhhhhhhhhcCCcchHHHHHHH
Q 005268 496 MP-VR---PD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 496 ~~-~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
.- +. .+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 61 11 11 457888999999999999999999999998765432 566678888889999999999998
Q ss_pred HH
Q 005268 562 AR 563 (705)
Q Consensus 562 m~ 563 (705)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=2.3e-07 Score=84.22 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSH 446 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 446 (705)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4455667778888888888888877 345566888888888888888888888887763 4443322221111 112
Q ss_pred cCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 521 (705)
.+...++...++...+. .| +...+..+...|.+.|++++|...++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223467777777643 55 4677888888999999999999988876 44554 55788889999999999999
Q ss_pred HHHHHHHhc
Q 005268 522 AVASDRLFE 530 (705)
Q Consensus 522 ~~~~~~~~~ 530 (705)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=1.2e-07 Score=80.64 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (705)
+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 333444444444444444444443 1222 34444444455555555555555555555555555555555555555555
Q ss_pred CcchHHHHHHHHHh
Q 005268 551 KWEGVDEVRSLARD 564 (705)
Q Consensus 551 ~~~~a~~~~~~m~~ 564 (705)
++++|.+.+++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=4e-07 Score=86.36 Aligned_cols=183 Identities=13% Similarity=-0.006 Sum_probs=130.4
Q ss_pred cccchhHHhhccCchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cc---hHHHHH
Q 005268 335 TYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--SS-SV---PWNAII 406 (705)
Q Consensus 335 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~~li 406 (705)
.+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ .. .|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445667888999999999999999864322 235677889999999999999999998762 22 22 355555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc
Q 005268 407 SCHGI------------------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467 (705)
Q Consensus 407 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 467 (705)
.++.. .|++++|+..|+++++ ..|+.. ....... . ..+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l------~~~~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----L------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----H------HHHHHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----H------HHHHHHHH------
Confidence 55554 5789999999999998 467653 2221111 0 01111111
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 468 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 468 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999887 23344 2468889999999999999999999999999976543
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=2.2e-07 Score=78.88 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=88.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 005268 430 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 505 (705)
Q Consensus 430 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 505 (705)
+.|+. ..+......+.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45553 35666677777778888888887777643 34 4567777778888888888888887776 3344 57789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
..+..++...|++++|+..++++++++|+++.++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998887776643
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=6.8e-06 Score=87.54 Aligned_cols=366 Identities=13% Similarity=0.056 Sum_probs=192.4
Q ss_pred hCC-ChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC-HHHH
Q 005268 106 QSG-NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM-MRHA 183 (705)
Q Consensus 106 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A 183 (705)
+.| ++..|..+|+.+... -|. ++.+.+.++|+..+.. .|++..|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 346 377888888887753 233 8899999999999884 4688899888887777663 3445
Q ss_pred HHHHhccCC------CCeehHHHHHHHHHc----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHc---cCChhhHH
Q 005268 184 LRVFDQMME------RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ---LNDCRNSR 250 (705)
Q Consensus 184 ~~~f~~m~~------~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a~ 250 (705)
..+|+.... .+...|...+.-+.. +++.+.+..+|++.... ++. .+..+-..+.. ..+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHH
Confidence 566665421 345677777765442 35677888888888763 221 11222222211 11111111
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCC-------hhHHHHH
Q 005268 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNGL-------ASEAIEV 319 (705)
Q Consensus 251 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~ 319 (705)
.+... +. +.+..|+.+++.+. ..+...|...+.--..++. .+.+..+
T Consensus 144 ~~~~~--------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 144 KIVGD--------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHH--------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHH--------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 11111 00 11222222221111 1133355554443322211 2345566
Q ss_pred HHhhhhcCCCCC-CcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC--
Q 005268 320 FQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA-MSLFYQVP-- 395 (705)
Q Consensus 320 ~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~-- 395 (705)
|+++.. ..| +...|...+.-+...|+++.|..+++++++. +.+...+.. |+...+.++. ..+.+...
T Consensus 202 ye~al~---~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 202 HNYILD---SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHH---HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHH---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhh
Confidence 666665 223 3344444555556667777777777777776 333332222 2221111111 11111110
Q ss_pred ----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhHHhh
Q 005268 396 ----------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC-SHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 396 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~ 464 (705)
......|-..+....+.+..+.|..+|++. .. ..++...|......- ...++.+.|+.+|+...+.+
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001123666666666677788888888877 31 112333333222111 12235788888888777653
Q ss_pred CCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 465 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 465 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
+- ++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 351 ~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 23345666777777888888888888873 2566777777777777777777777776653
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=2e-06 Score=85.00 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 442 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 442 (705)
+...+..+...|.+.|++++|...|+++...+... +......+...++.++|+..|++..+. .|+ ...+..+..
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~ 227 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLAL 227 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHH
Confidence 45566778888888888888888888887433322 222233356677788888888888884 454 457777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCC---cchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
++...|++++|...|..+.+. .|+ ...+..++.+|...|+.++|...+++
T Consensus 228 ~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 228 QLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 888888888888888888765 343 44566666666666766666665543
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=4.4e-06 Score=82.33 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=100.0
Q ss_pred CHHHHHHHHhhCC---CCCcchHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH-
Q 005268 383 RIDDAMSLFYQVP---RSSSVPWNAIISCH----GIH---GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS- 451 (705)
Q Consensus 383 ~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 451 (705)
+++++++.++.+. +++...|+.-...+ ... +++++++++++++.+.. +-|...|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 5555555555443 23333344433333 333 55666666666666632 223445555555555555555
Q ss_pred -HHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChh-H
Q 005268 452 -EGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGH------LGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNME-L 520 (705)
Q Consensus 452 -~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~-~ 520 (705)
+++++++.+.+. .| +...|+.-..++.+.|+ ++++++.++++ ... -|...|+.+...+.+.|+.. .
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666543 33 33445555555555554 66666666554 222 35667777766666666533 3
Q ss_pred HHHHHHHHhccC---CCCcchhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 521 GAVASDRLFEVD---SENVGYYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 521 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
...+++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 445666666655 66666666777777777777777777777654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=6.6e-07 Score=83.88 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 481 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 481 (705)
+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.|+...+. .|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~------------- 68 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DK------------- 68 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cc-------------
Confidence 334444455555555555555544 2344445555555555555555555555544432 12
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----------------chhhhhhhh
Q 005268 482 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV----------------GYYVLMSNI 545 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~ 545 (705)
.+...|..+...+...|++++|+..+++++++.|++. ..+..++.+
T Consensus 69 ------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 69 ------------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 2344455555555555555555555555555554444 445555555
Q ss_pred hhhcCCcchHHHHHHHHHhC
Q 005268 546 YANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 546 ~~~~g~~~~a~~~~~~m~~~ 565 (705)
|...|++++|.+.++.+.+.
T Consensus 131 ~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHc
Confidence 55555555555555555443
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=8.9e-06 Score=80.12 Aligned_cols=227 Identities=7% Similarity=0.021 Sum_probs=162.4
Q ss_pred CChhHHHHHHHhhhhcCCCCCCccc-ccchhHHhhccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 005268 311 GLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVG--ALRQGIKIHARVIKNCLCFDVFVATCLVDMY----GKC-- 381 (705)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~k~-- 381 (705)
...++|++++..+.. +.|+..| ++.--..+...+ +++++...++.++.... -+..+++---..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence 344577777777776 6665443 344444445555 77777777777776542 2333443333333 444
Q ss_pred -CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------
Q 005268 382 -GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGD--KALNFFRQMLDEGVRPDHITFVSLLTACSHSGL------ 449 (705)
Q Consensus 382 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 449 (705)
+++++++.+++.+. +++...|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78889999988876 566677888888888888888 9999999999964 3355677666666666666
Q ss_pred HHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChhHHH
Q 005268 450 VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGM-AHNFIQNMP-V----RPDASIWGALLGACRIHGNMELGA 522 (705)
Q Consensus 450 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~ 522 (705)
+++++++++.+... .| |...|+.+..++.+.|+..+ +.++..+.- . ..+...+..+...+.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999888754 45 66788888889999988554 556777652 1 246788999999999999999999
Q ss_pred HHHHHHhc-cCCCCcchhhhhhhh
Q 005268 523 VASDRLFE-VDSENVGYYVLMSNI 545 (705)
Q Consensus 523 ~~~~~~~~-~~p~~~~~~~~l~~~ 545 (705)
++++.+.+ .+|.....+...++.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHhccChHHHHHHHHHHhh
Confidence 99999996 899877766655443
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=3.2e-07 Score=79.88 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=80.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
..+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45556667778888888888888776 2334 677888999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 005268 549 VGKWEGVDEVRSLARDR 565 (705)
Q Consensus 549 ~g~~~~a~~~~~~m~~~ 565 (705)
.|++++|.+.++...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.7e-06 Score=84.27 Aligned_cols=161 Identities=6% Similarity=-0.038 Sum_probs=120.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc----chHH
Q 005268 404 AIISCHGIHGQGDKALNFFRQMLDEGV-RPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL----KHYG 474 (705)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~ 474 (705)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+...+...-.++. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887321 22211 23345666777889999999999888632222232 2688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-----C--C-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchh
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNMP-----V--R-PD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYY 539 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~-----~--~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 539 (705)
.+...|...|++++|+..++++- . . |. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887762 1 1 22 3478899999999999999999999999875433 4567
Q ss_pred hhhhhhhhhcCC-cchHHHHHHHHHh
Q 005268 540 VLMSNIYANVGK-WEGVDEVRSLARD 564 (705)
Q Consensus 540 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 564 (705)
..++.+|...|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999995 5999999988764
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=1.4e-07 Score=92.98 Aligned_cols=191 Identities=12% Similarity=0.000 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005268 367 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 442 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 442 (705)
+...+..+...|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556667777788888888888887665 34556688888888888888888888888887 4554 457777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 521 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 521 (705)
++...|++++|...|+...+. .|+. ..+...+....+.++...... .......++..+...+. .+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 888888899988888877653 2321 111112222222221111111 22223334444444442 22 36888999
Q ss_pred HHHHHHHhccCCCCcchhhhhhhhhhhc-CCcchHHHHHHHHHhC
Q 005268 522 AVASDRLFEVDSENVGYYVLMSNIYANV-GKWEGVDEVRSLARDR 565 (705)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 565 (705)
.+.++++++++|++......+...+... +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777766 7788999999887653
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=8.3e-07 Score=88.06 Aligned_cols=163 Identities=7% Similarity=-0.044 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 472 (705)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...-..+ ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 455667778888999999998888874321111 12334455667788999999998877643111112 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Ccc
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNMP----VRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE------NVG 537 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 537 (705)
|+.+...|...|++++|...++++- ..|+ ..++..+...|...|++++|...+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888899999999999998887752 1222 258889999999999999999999999876532 145
Q ss_pred hhhhhhhhhhhcCCcchH-HHHHHHHHh
Q 005268 538 YYVLMSNIYANVGKWEGV-DEVRSLARD 564 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 564 (705)
+|..++.+|...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 678899999999999999 777777654
No 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=7.2e-07 Score=83.41 Aligned_cols=185 Identities=14% Similarity=0.027 Sum_probs=120.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 300 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 379 (705)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 379 (705)
+-.....+...|++++|+..|++..+ ..|+........ . ... .........+.+...|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~-~---~~~--------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWT-N---VDK--------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHH-H---SCT--------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHh-h---hcc--------------hhhhhHHHHHHHHHHHH
Confidence 33445566778888888888888877 555432110000 0 000 00112223445778888
Q ss_pred hcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc--HHHH
Q 005268 380 KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGL--VSEG 453 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a 453 (705)
+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999998776 45566788899999999999999999999998 4565 4577777777765554 3444
Q ss_pred HHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005268 454 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLG 510 (705)
Q Consensus 454 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 510 (705)
...++... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55554432 22232234445566777789999999999887 67788776665554
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=2.7e-06 Score=79.55 Aligned_cols=145 Identities=8% Similarity=-0.080 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLV 450 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 450 (705)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++.++.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44567778899999999999999988888889999999999999999999999999853 33456888888899999999
Q ss_pred HHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 451 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 451 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
++|.+.|+...+. .|+..... +...| +...|+ ...|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999988764 23211000 00000 012333 4567777778888888888888888888
Q ss_pred ccCCCC
Q 005268 530 EVDSEN 535 (705)
Q Consensus 530 ~~~p~~ 535 (705)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888765
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=3.3e-06 Score=79.15 Aligned_cols=173 Identities=6% Similarity=-0.096 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcC----ChHHHHHHHHHH
Q 005268 351 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SSSVPWNAIISCHGIHG----QGDKALNFFRQM 425 (705)
Q Consensus 351 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 425 (705)
+|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .+...+..|...|.. + ++++|+++|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455666666654 666777788888888899999888887763 455567777777777 6 889999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhhCCcCC---cchHHHHHHHHHh----cCCHHHHHHHHH
Q 005268 426 LDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGR----AGHLGMAHNFIQ 494 (705)
Q Consensus 426 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~ 494 (705)
.+.| +...+..|...|.. .+++++|.++|+...+ ..|. +..+..|..+|.. .+++++|+..|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8755 55667777777776 7899999999988763 3442 6788888888888 789999999998
Q ss_pred hCC-CCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 005268 495 NMP-VRPDASIWGALLGACRIH-G-----NMELGAVASDRLFEVDS 533 (705)
Q Consensus 495 ~~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 533 (705)
+.- ..++...+..|...|... | |.++|...++++.+..+
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 873 334666777787777653 3 89999999999888754
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.47 E-value=1.6e-05 Score=84.61 Aligned_cols=98 Identities=7% Similarity=-0.061 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--CCeehHHHHHHHHHcCCC-hhhHHHHHHHH
Q 005268 145 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSND-PITAHGFFTTM 221 (705)
Q Consensus 145 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 221 (705)
+..|+.+++.++..- |. |+.+.+..+|++... |++..|...+.-..+.+. .+....+|+..
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666777777766542 11 788888888887755 677777777666555442 34455566555
Q ss_pred HHC-CCCC-ChhhHHHHHHHHH----ccCChhhHHHHHHHHHH
Q 005268 222 QQA-GIQP-DLLTLVSLTSIVA----QLNDCRNSRSVHGFIMR 258 (705)
Q Consensus 222 ~~~-g~~p-~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~ 258 (705)
... |..| +...|...+.-+. ..++.+.++.+++.++.
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 432 3333 2223333333222 12334455555555554
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=1.4e-06 Score=73.16 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGAC 512 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~ 512 (705)
..+..+...+...|++++|.++++.+.+. .+.+...+..++..+.+.|++++|...++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34455555556666666666666655543 1123445566666666667777776666655 1 223567788888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcC
Q 005268 513 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 550 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (705)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999988888888877765543
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=9.5e-07 Score=74.87 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4556667777888888888887766 2333 5778888888899999999999999999999999888899999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 005268 550 GKWEGVDEVRSLARDR 565 (705)
Q Consensus 550 g~~~~a~~~~~~m~~~ 565 (705)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 9999999988888765
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=1.5e-06 Score=77.51 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACR 513 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 513 (705)
+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++. ... .+...|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444555555555555555555432 22 3445555666666666666666666554 222 34667888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhh--hhhhhhcCCcchHHHHHHHHHh
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLM--SNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
..|++++|...+++++++.|+++..+..+ +..+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88889999999999888888887777444 4447778888888888876643
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=8.8e-07 Score=89.70 Aligned_cols=94 Identities=5% Similarity=-0.063 Sum_probs=80.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
..|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57788888888899999998888877 3334 578899999999999999999999999999999999999999999999
Q ss_pred cCCcchH-HHHHHHHHh
Q 005268 549 VGKWEGV-DEVRSLARD 564 (705)
Q Consensus 549 ~g~~~~a-~~~~~~m~~ 564 (705)
.|++++| ...++.|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 456666643
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=1.5e-06 Score=73.71 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 513 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 513 (705)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4455555566666666666666665543 1123455666666666777777777666655 2223 4677888888899
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcc
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 553 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (705)
..|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988888888888888887753
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=3.7e-06 Score=83.34 Aligned_cols=162 Identities=7% Similarity=-0.063 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCc------chHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVPR---SSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGV---RPD--HI 435 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 435 (705)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778889999999988875431 111 1134456667788999999999999886321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------CH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRP-------DA 502 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 502 (705)
+++.+...|...|++++|..+|+...+.....|+ ...+..+...|.+.|++++|+..+++.- ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988743222333 2578889999999999999999998761 111 16
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 005268 503 SIWGALLGACRIHGNMELG-AVASDRLFEV 531 (705)
Q Consensus 503 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 531 (705)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6888999999999999999 7778887764
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=5.4e-07 Score=86.67 Aligned_cols=138 Identities=9% Similarity=-0.044 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC--cchHHHHHHHH
Q 005268 403 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLF 480 (705)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 480 (705)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34566677788888888888877763 465544444555788888999999888744321 0 111 23677788889
Q ss_pred HhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhh
Q 005268 481 GRAGHLGMAHNFIQNMP---VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
.+.|++++|++.|++.. ..|. ...+..+..++...|+.++|...|+++...+|+ +.....|.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999998772 2243 336777888899999999999999999999997 6666666543
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=1.4e-06 Score=76.37 Aligned_cols=104 Identities=7% Similarity=-0.024 Sum_probs=85.7
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 005268 430 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 505 (705)
Q Consensus 430 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 505 (705)
+.|+. ..+..+...+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|+..|+++ ...| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45654 36777777888999999999999988754 55 5678888999999999999999999887 3444 46788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 506 GALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998653
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-06 Score=74.13 Aligned_cols=80 Identities=6% Similarity=-0.077 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
.+..+...|...|++++|...+++. .. +.+...|..+...+...|++++|...++++++++|++...+..++.++...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 3444444444444444444444443 11 224667778888888888888888888888888888888888888777665
Q ss_pred CC
Q 005268 550 GK 551 (705)
Q Consensus 550 g~ 551 (705)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=1.8e-06 Score=70.84 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=79.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--Ccchhhhhhhh
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNI 545 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 545 (705)
...+..+...+.+.|++++|...+++. .. +.+..+|..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 456667777788888888888888766 22 235678888888899999999999999999999998 88888889999
Q ss_pred hhhc-CCcchHHHHHHHHHhCCC
Q 005268 546 YANV-GKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 546 ~~~~-g~~~~a~~~~~~m~~~~~ 567 (705)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=6.8e-07 Score=86.01 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=136.9
Q ss_pred hcCCHHHHHHHHhhCC---CCCcchHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCHH--------------
Q 005268 380 KCGRIDDAMSLFYQVP---RSSSVPWNAI-------ISCHGIHGQGDKALNFFRQMLDEGVRPDHI-------------- 435 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 435 (705)
..++...|.+.|.++. +.....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5788999999998877 3344558877 4566666666666666665555 444321
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 005268 436 --------TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA----S 503 (705)
Q Consensus 436 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 503 (705)
....+..++...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223355678889999999999987763 2454336667778899999999999999877544433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEVD--SE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67888999999999999999999998543 54 4456778999999999999999999999876
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=8.8e-07 Score=77.62 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=82.1
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005268 422 FRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 498 (705)
Q Consensus 422 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 498 (705)
|++++. +.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|+..|++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 44543 35556666777778888888888777643 44 4566777777888888888888888776 23
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 499 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 499 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
.| +...|..+..++...|++++|+..+++++++.|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 34 467788889999999999999999999999999877553
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=2.8e-06 Score=90.40 Aligned_cols=116 Identities=9% Similarity=0.012 Sum_probs=83.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME 519 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 519 (705)
.+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556666666666665543 33 3456666677777777777777777665 2344 4678889999999999999
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhh--hhhcCCcchHHHHHHH
Q 005268 520 LGAVASDRLFEVDSENVGYYVLMSNI--YANVGKWEGVDEVRSL 561 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 561 (705)
+|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999888888887 8888999999998874
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=9.3e-07 Score=74.38 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=82.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
..+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566777888999999999999887 3344 578899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 005268 549 VGKWEGVDEVRSLARDR 565 (705)
Q Consensus 549 ~g~~~~a~~~~~~m~~~ 565 (705)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=3.5e-05 Score=76.17 Aligned_cols=158 Identities=8% Similarity=-0.053 Sum_probs=119.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCc---c------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 005268 374 LVDMYGKCGRIDDAMSLFYQVPRSSS---V------PWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVS 439 (705)
Q Consensus 374 li~~y~k~g~~~~A~~~~~~~~~~~~---~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 439 (705)
.+..+...|++++|...+++...... . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999987653211 1 1334666677778999999999999984322 22 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhC----CcCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFG----IKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP-------VRPD-ASIWG 506 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 506 (705)
+..+|...|++++|..+|+.+.+... ..+. ..+|..+...|.+.|++++|...+++.- ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998875321 1121 2478889999999999999999987761 1222 66889
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 005268 507 ALLGACRIHGN-MELGAVASDRLFEV 531 (705)
Q Consensus 507 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 531 (705)
.+...+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998875
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=8.3e-07 Score=80.48 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=55.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hHHHHHHHHHhccCCCCcchhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA-CRIHGNM--ELGAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
..|..+...|...|++++|...+++. ...| +...|..+... +...|++ ++|+..++++++.+|+++..+..++.+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD 124 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444444444444444444444443 1112 34455555555 5566666 667777777776667666666666777
Q ss_pred hhhcCCcchHHHHHHHHHhC
Q 005268 546 YANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 546 ~~~~g~~~~a~~~~~~m~~~ 565 (705)
|...|++++|...++.+.+.
T Consensus 125 ~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 125 AFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHhh
Confidence 77777777777766666654
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=4e-06 Score=75.86 Aligned_cols=126 Identities=7% Similarity=0.099 Sum_probs=98.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHH-HHhcCCH-
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDL-FGRAGHL- 486 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 486 (705)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678889999999888853 335568888888999999999999999988764 34 55677778888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 487 -GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 487 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999877 3344 477889999999999999999999999999999876544
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=7.4e-06 Score=75.76 Aligned_cols=151 Identities=14% Similarity=0.030 Sum_probs=70.3
Q ss_pred hcCCHHHHHH---HHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHH
Q 005268 380 KCGRIDDAMS---LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVS 451 (705)
Q Consensus 380 k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 451 (705)
..|++++|.+ .+..-+......++.+...+...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 443322233344566666666666666666666665541 11111 234555555566666666
Q ss_pred HHHHHHHHhHHhhCCcC-C----cchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 005268 452 EGQRYFHMMQEEFGIKP-H----LKHYGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNM 518 (705)
Q Consensus 452 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~ 518 (705)
+|.+.++...+...-.+ + ...+..+...+...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543311111 1 1234444455555555555555544331 0011 11234444444555555
Q ss_pred hHHHHHHHHHhc
Q 005268 519 ELGAVASDRLFE 530 (705)
Q Consensus 519 ~~a~~~~~~~~~ 530 (705)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=3.1e-06 Score=72.69 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=75.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4456666777777777777777777665 2233 4677888888888888888888888888888888888888888888
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 005268 547 ANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~ 565 (705)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887764
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=9.4e-06 Score=86.28 Aligned_cols=113 Identities=13% Similarity=0.035 Sum_probs=58.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCH
Q 005268 409 HGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 409 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 486 (705)
+.+.|++++|++.|++.++. .|+ ...+..+..++...|++++|.+.+++..+. .| +...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCH
Confidence 34455666666666666553 333 345555555666666666666666655532 33 334555566666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 005268 487 GMAHNFIQNM-PVRP-DASIWGALLGA--CRIHGNMELGAVASD 526 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 526 (705)
++|++.++++ ...| +...|..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666554 1222 22334444333 555666666666666
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=6.8e-06 Score=68.03 Aligned_cols=89 Identities=8% Similarity=0.042 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCc
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 552 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (705)
.++..+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence 3334444444444444444433 1111 3444444444444555555555555555555554444444555555555555
Q ss_pred chHHHHHHHHH
Q 005268 553 EGVDEVRSLAR 563 (705)
Q Consensus 553 ~~a~~~~~~m~ 563 (705)
++|.+.++...
T Consensus 89 ~~A~~~~~~~~ 99 (118)
T 1elw_A 89 EEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=2.1e-06 Score=76.61 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
.+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555544 1222 4555666666666666666666666666666666666666666666666
Q ss_pred CCcchHHHHHHHHHhC
Q 005268 550 GKWEGVDEVRSLARDR 565 (705)
Q Consensus 550 g~~~~a~~~~~~m~~~ 565 (705)
|++++|.+.+++..+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666665543
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=1.8e-06 Score=73.35 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hhhhh
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-------YYVLM 542 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 542 (705)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788888888888888888876 3444 4778999999999999999999999999999887654 56678
Q ss_pred hhhhhhcCCcchHHHHHHHHHhC
Q 005268 543 SNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 543 ~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.+|...|++++|.+.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999987754
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=1.3e-05 Score=73.96 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=114.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCcC-CcchHHHHHHHHHhcC
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCMVDLFGRAG 484 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g 484 (705)
...|++++|.++++.+.. .++ ...++..+...+...|++++|...+++..+.. +..| ....+..+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457999999996655543 222 34578888889999999999999999887632 1222 3457888899999999
Q ss_pred CHHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC--CCc----chhhhhhhhhhhc
Q 005268 485 HLGMAHNFIQNMP----VRP-D----ASIWGALLGACRIHGNMELGAVASDRLFEVDS--ENV----GYYVLMSNIYANV 549 (705)
Q Consensus 485 ~~~~A~~~~~~~~----~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~ 549 (705)
++++|.+.+++.- ..+ + ..++..+...+...|++++|...+++++++.+ +++ ..+..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 9999999887761 122 2 34678888899999999999999999987532 222 2356899999999
Q ss_pred CCcchHHHHHHHHHhC
Q 005268 550 GKWEGVDEVRSLARDR 565 (705)
Q Consensus 550 g~~~~a~~~~~~m~~~ 565 (705)
|++++|.+.+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=1e-05 Score=67.76 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=86.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhh
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 547 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (705)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 457788889999999999999999887 22 3467889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 005268 548 NVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 548 ~~g~~~~a~~~~~~m~~~ 565 (705)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1e-05 Score=70.36 Aligned_cols=103 Identities=8% Similarity=-0.046 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGAL 508 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 508 (705)
..+..+...+...|++++|.+.|+... ...|+ ...+..+...|.+.|++++|+..+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444445555555555555555444 22333 234444444444444444444444433 1112 23344444
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 509 LGACRIHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 509 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
...+...|++++|...++++++++|+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 44444444444444444444444444443333
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=6.8e-06 Score=69.87 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=86.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
+...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|+..++++++.+|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3456777888889999999999998876 3444 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 005268 547 ANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~ 565 (705)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-05 Score=69.47 Aligned_cols=93 Identities=12% Similarity=-0.046 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchH
Q 005268 399 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHY 473 (705)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~ 473 (705)
...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+. .| +...+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 102 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKAL 102 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHH
Confidence 34466666667777777777777777766 4455 345566666666777777777777666543 33 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 005268 474 GCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
..+..+|.+.|++++|...+++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666777777777777776655
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=1.2e-05 Score=66.43 Aligned_cols=106 Identities=9% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 513 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 513 (705)
+..+...+...|++++|...++..... .| +...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444455555555555555554432 22 3344555555555666666666655554 1223 4667778888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhh
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888887766665544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=2.3e-06 Score=74.26 Aligned_cols=104 Identities=8% Similarity=-0.075 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 512 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 512 (705)
.+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4445555666777777777777766643 34 4456666777777777777777777665 2233 456778888889
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchhhhh
Q 005268 513 RIHGNMELGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
...|++++|+..+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999877654443
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=5.5e-06 Score=73.74 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999888765
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=1.7e-05 Score=70.51 Aligned_cols=125 Identities=11% Similarity=-0.008 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLF 480 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 480 (705)
|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .| +...+..+...+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 4555566666677777777777766632 223456666666677777777777777766643 23 345666777777
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChhHHHHHHHHHhc
Q 005268 481 GRAGHLGMAHNFIQNM-PVRP-DASIWGAL--LGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 530 (705)
.+.|++++|...++++ ...| +...|..+ +..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777665 2223 34444333 3336667778888887776654
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=7.8e-06 Score=75.53 Aligned_cols=169 Identities=8% Similarity=-0.053 Sum_probs=102.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 005268 375 VDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 451 (705)
Q Consensus 375 i~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 451 (705)
+......|++++|.+.++.-.. .....|..+...+...|++++|+..|++.++. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344455677777766654432 12334777777788888888888888888873 3332111000 000
Q ss_pred HHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 005268 452 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLF 529 (705)
Q Consensus 452 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 529 (705)
.-. ..+ ....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 1235666777788888888888887766 2233 57788899999999999999999999999
Q ss_pred ccCCCCcchhhhhhhhhhhcCCcchHH-HHHHHHHh
Q 005268 530 EVDSENVGYYVLMSNIYANVGKWEGVD-EVRSLARD 564 (705)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 564 (705)
+++|+++..+..++.++...|+.+++. ..++.|..
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998888877776 44444443
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=8.3e-06 Score=68.93 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh
Q 005268 469 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 546 (705)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (705)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3457778889999999999999999887 2333 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 005268 547 ANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~ 565 (705)
...|++++|...++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998875
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=3.4e-06 Score=73.15 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCcchh----hhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 504 IWGALLGACRIHGNMELGAVASDRLFEV-------DSENVGYY----VLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 504 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...+++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777888888888888888888888887 88888888 88888888888888888888887654
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00013 Score=72.18 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=121.2
Q ss_pred HcCChh-HHHHHHHhhhhcCCCCCCccc-ccchhHHhhccCc----------hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 309 QNGLAS-EAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGA----------LRQGIKIHARVIKNCLCFDVFVATCLVD 376 (705)
Q Consensus 309 ~~g~~~-~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~ 376 (705)
+.|.++ +|++++..+.. +.|+..| ++.--..+...+. ++.+..+++.++... +-+..+++--..
T Consensus 41 ~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444444 67777777776 6665544 2211111111111 455666666666543 335555555555
Q ss_pred HHHhcC--CHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 005268 377 MYGKCG--RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ-GDKALNFFRQMLDEGVRPDHITFVSLLTACSHS--- 447 (705)
Q Consensus 377 ~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 447 (705)
.+.+.| .++++..+++.+. .+|...|+--.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 555666 3677777777665 4455556666666666666 477777777777743 22344555444433333
Q ss_pred -----------CcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHH
Q 005268 448 -----------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA-----------GHLGMAHNFIQNM-PVRPDAS 503 (705)
Q Consensus 448 -----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 503 (705)
+.++++++++...... .| |...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 4466666666666543 44 344555454444444 3456666666655 344543
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCcchhhhh
Q 005268 504 IWGALLGAC-----RIHGNMELGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 504 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
.|..+..+. ...|..++....+.++.+++|...+.|..+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 343222221 123455566666777777777555444444
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=2.9e-05 Score=76.19 Aligned_cols=88 Identities=14% Similarity=-0.065 Sum_probs=61.0
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChhHH
Q 005268 240 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEA 316 (705)
Q Consensus 240 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 316 (705)
+...|+++.|...+..+++. .+.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...|++++|
T Consensus 14 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33334444444444444433 35567777888888888888888888887654 33667788888888889999999
Q ss_pred HHHHHhhhhcCCCCCC
Q 005268 317 IEVFQMMEECNEINPN 332 (705)
Q Consensus 317 ~~~~~~m~~~~~~~p~ 332 (705)
+..|++..+ +.|+
T Consensus 92 ~~~~~~al~---l~p~ 104 (281)
T 2c2l_A 92 IANLQRAYS---LAKE 104 (281)
T ss_dssp HHHHHHHHH---HHHH
T ss_pred HHHHHHHHH---hCcc
Confidence 998888876 4553
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.09 E-value=1.6e-05 Score=70.73 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA 511 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 511 (705)
..+..+...+...|++++|.+.|+...+. .| +...|..+...|.+.|++++|+..+++. ...| +...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555555666666666666666666543 33 4456666777777777777777777665 2334 47788999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 512 CRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
+...|++++|+..++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887655443
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.4e-05 Score=67.55 Aligned_cols=105 Identities=10% Similarity=-0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005268 437 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 513 (705)
Q Consensus 437 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 513 (705)
+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444455555555555555554432 22 3345555555666666666666665554 2233 4667777888888
Q ss_pred hcCChhHHHHHHHHHhccC------CCCcchhhhhhh
Q 005268 514 IHGNMELGAVASDRLFEVD------SENVGYYVLMSN 544 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 544 (705)
..|++++|+..++++++++ |+++.....+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 8888888888888888888 666555555443
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.08 E-value=0.00053 Score=68.23 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=71.1
Q ss_pred HHHHcCChhHHHHHHHhhhhcCCCCCCccc-ccchhHHhhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C
Q 005268 306 GYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-G 382 (705)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-g 382 (705)
.....+..++|++++.++.. +.|+..| ++.--..+...+ .++++...++.++... +-+..+++--...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33444555677777777776 6665433 333333333344 3555666665555542 22334444444444443 4
Q ss_pred -CHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-
Q 005268 383 -RIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGD--------KALNFFRQMLDEGVRPDHITFVSLLTACSHSGL- 449 (705)
Q Consensus 383 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 449 (705)
++++++++++++.+. |...|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-...+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 555555555555532 2333444333333333333 5555555555532 2233444444444444433
Q ss_pred ------HHHHHHHHHHhH
Q 005268 450 ------VSEGQRYFHMMQ 461 (705)
Q Consensus 450 ------~~~a~~~~~~m~ 461 (705)
+++++++++.+.
T Consensus 218 ~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSI 235 (349)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 344444444444
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.00013 Score=72.48 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=153.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCCcchHHHHHHHHHhc-C-ChHHHHHH
Q 005268 348 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIH-G-QGDKALNF 421 (705)
Q Consensus 348 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~ 421 (705)
..++|.++.+.++... +-+..+++.--..+...| .+++++..++.+. .++...|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3467888999988874 335566777667777788 5999999999887 45556688877777776 7 89999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCC------
Q 005268 422 FRQMLDEGVRP-DHITFVSLLTACSHSGLVS--------EGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGH------ 485 (705)
Q Consensus 422 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------ 485 (705)
++++++. .| |...|..-.....+.|.++ +++++++.+.+. .| |...|+....++.+.|+
T Consensus 148 ~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 148 IHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999984 44 4567766655666655555 899999988864 44 56678888888888886
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccC------CCCc
Q 005268 486 -LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM--------------------ELGAVASDRLFEVD------SENV 536 (705)
Q Consensus 486 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 536 (705)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78899988776 3344 688999888888777654 22222333333222 3455
Q ss_pred chhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 537 GYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.+...|+++|...|+.++|.++++.+.++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 56678999999999999999999998643
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=7.5e-06 Score=69.37 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchhhhhhhhh
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNM-PVRPD-A---SIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIY 546 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 546 (705)
.+...+.+.|++++|...|++. ...|+ . ..|..+...+...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566666666666666654 11232 2 356666677777777777777777777777776 55577777777
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 005268 547 ANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 547 ~~~g~~~~a~~~~~~m~~~ 565 (705)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=2e-05 Score=66.49 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVL 541 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 541 (705)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35566677777788888888877766 2 23357788888888999999999999999999888766 677888
Q ss_pred hhhhhhhcCCcchHHHHHHHHHhC
Q 005268 542 MSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 542 l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
++.+|...|++++|.+.++.+.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988775
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=2.2e-06 Score=71.57 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 483 AGHLGMAHNFIQNM-PV---RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 483 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
.|++++|+..|++. .. .|+ ..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666555 22 132 44666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 005268 558 VRSLARDR 565 (705)
Q Consensus 558 ~~~~m~~~ 565 (705)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.3e-05 Score=69.58 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIW----GALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
.|..+..++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666555444 33776 5588 999999999999999999999999999988766
Q ss_pred hhhh
Q 005268 539 YVLM 542 (705)
Q Consensus 539 ~~~l 542 (705)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5443
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=3e-05 Score=82.00 Aligned_cols=94 Identities=9% Similarity=-0.010 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
..|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57778888888999999999888877 3334 577899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHH-HHHHHHh
Q 005268 549 VGKWEGVDE-VRSLARD 564 (705)
Q Consensus 549 ~g~~~~a~~-~~~~m~~ 564 (705)
.|+++++.+ .++.|..
T Consensus 398 ~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 398 AKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 999988874 4555443
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=2.5e-05 Score=63.83 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=55.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 005268 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP---DASIWGALLGACRI 514 (705)
Q Consensus 439 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~ 514 (705)
.+...+...|++++|...++...+. .+.+...+..+...+.+.|++++|...+++. ...| +..+|..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 3333444444444444444444432 0112334445555555555666665555544 2223 46677778888888
Q ss_pred c-CChhHHHHHHHHHhccCCCCc
Q 005268 515 H-GNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 515 ~-g~~~~a~~~~~~~~~~~p~~~ 536 (705)
. |++++|.+.++++++..|+++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 8 888888888888888887654
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.98 E-value=2.5e-05 Score=65.44 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=51.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 518 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 518 (705)
..+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+...+...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444455555555555554432 23 3344555555555555555555555554 2234 456777777788888888
Q ss_pred hHHHHHHHHHhccCCCCc
Q 005268 519 ELGAVASDRLFEVDSENV 536 (705)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~ 536 (705)
++|+..++++++++|+++
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 888888888888887653
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=4.7e-05 Score=70.19 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-D----------------ASIWGALLGACRIHGNMELGAVASDRLFEVDS 533 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 533 (705)
.+..+...+.+.|++++|...|++. ...| + ..+|..+...+...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 4555566666777777777766654 1111 1 26888899999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 534 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+++.++..++.+|...|++++|.+.++...+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.97 E-value=4.6e-05 Score=76.93 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----------------HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 464 (705)
.|..+...|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|+..++...+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3555666666667777777777777663 343 256777777788888888888888777653
Q ss_pred CCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHhc
Q 005268 465 GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG-AVASDRLFE 530 (705)
Q Consensus 465 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 530 (705)
.| +...|..+..+|...|++++|+..|+++ ...| +..+|..+...+...|+.++| ...++++++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 4567777788888888888888888776 3344 466788888888888888887 446666664
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.97 E-value=0.00033 Score=69.33 Aligned_cols=211 Identities=9% Similarity=0.035 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC--
Q 005268 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR----------IDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ-- 414 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 414 (705)
++|....+.++.... -+..+++.--..+...|. ++++...++.+. +++...|+.-.-.+...|+
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 467888888877542 233444443333333332 678888888776 5667778888888888884
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhc---------
Q 005268 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA--------- 483 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------- 483 (705)
+++++.+++++.+.. +-|...|+.-..++...|. +++++++++.+.+. .| |...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccc
Confidence 799999999999953 3355677777667777787 69999999999865 44 556777776666655
Q ss_pred -----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcchhhhhhhh
Q 005268 484 -----GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 484 -----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.++++++++|++.-.+..++..
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 5688899988877 2334 688998776666655 457899999999999999986554443322
Q ss_pred ---hhhcCCcchHHHHHHHHHhC
Q 005268 546 ---YANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 546 ---~~~~g~~~~a~~~~~~m~~~ 565 (705)
....|..++....+.++++.
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHh
Confidence 22457777888888888764
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=6.3e-05 Score=63.49 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=55.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCcCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 005268 443 ACSHSGLVSEGQRYFHMMQEEFGIKPHL----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACR 513 (705)
Q Consensus 443 a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~ 513 (705)
.+...|++++|...|+.+.+. .|+. ..+..+...+.+.|++++|...+++. ...|+ ...+..+...+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555544432 2221 24444555555556666665555544 11222 455667777788
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhh
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYV 540 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (705)
..|++++|...++++++..|+++....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 888888888888888888887655443
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=2.5e-05 Score=66.82 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005268 433 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALL 509 (705)
Q Consensus 433 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 509 (705)
+...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|...+++. ...| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3445556666666666666666666665543 23 3456666666777777777777766655 2233 466788888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
..+...|++++|+..+++++++.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 88888899999999999888888863
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.4e-05 Score=78.88 Aligned_cols=163 Identities=6% Similarity=-0.147 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCcCC-cch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH-LKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~ 472 (705)
+..+...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|..+++.+++....... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4566777777777777777777765521 111211 22223334456678888888877665421 11221 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CC----cc
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNMP-------VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS---EN----VG 537 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 537 (705)
+..++..|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++...| ++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888888888888877651 1222 44777888888899999999999888876532 22 23
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677888888999999887766643
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00026 Score=76.55 Aligned_cols=168 Identities=10% Similarity=0.006 Sum_probs=136.8
Q ss_pred CCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 005268 382 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ----------GDKALNFFRQMLDEGVRPD-HITFVSLLTACSHS 447 (705)
Q Consensus 382 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 447 (705)
..-++|.+.++.+. +.+...|+.--..+...|+ ++++++.++++.+. .|. ...|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34567788888776 4445568887777777777 89999999999994 454 56888888888888
Q ss_pred C--cHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 005268 448 G--LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAG-HLGMAHNFIQNM-PVRP-DASIWGALLGACRIH------ 515 (705)
Q Consensus 448 g--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 515 (705)
+ ++++++++++.+.+. .| +...|+.-..++.+.| ..+++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 779999999999865 45 5567888888888899 899999999888 4445 688999888887763
Q ss_pred --------CChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcch
Q 005268 516 --------GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554 (705)
Q Consensus 516 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (705)
+.++++.+.+.+++.++|++.++|..+..++.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998666
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=3.6e-05 Score=67.70 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Ccc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE------NVG 537 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 537 (705)
.+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 33444444455555555544444330 0011 335556666677777777777777776654221 134
Q ss_pred hhhhhhhhhhhcCCcchHHHHHHHHHh
Q 005268 538 YYVLMSNIYANVGKWEGVDEVRSLARD 564 (705)
Q Consensus 538 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 564 (705)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466777888888888888888777654
No 183
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=4.4e-05 Score=64.53 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC--------cch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--------LKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~ 472 (705)
|..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.++...+. .|+ ...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHHH
Confidence 44555666666666666666666666 3444 345566666666666666666666665532 221 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWG 506 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 506 (705)
|..+...+...|++++|++.|++. ...||..+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 555666677777777777776654 3345554443
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.2e-05 Score=79.42 Aligned_cols=146 Identities=5% Similarity=-0.118 Sum_probs=86.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHH
Q 005268 400 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 479 (705)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 479 (705)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3477788888889999999999999888 4565542 234455555443321 1277888999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhh-hhcCCcchHH
Q 005268 480 FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKWEGVD 556 (705)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 556 (705)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 3344 5788999999999999999999999999999999999988888774 4456777888
Q ss_pred HHHHHHHhC
Q 005268 557 EVRSLARDR 565 (705)
Q Consensus 557 ~~~~~m~~~ 565 (705)
+.++.|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=2.1e-05 Score=66.47 Aligned_cols=112 Identities=7% Similarity=-0.060 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHH
Q 005268 401 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 480 (705)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 480 (705)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 35555666666666666666666666532 2233455555555556666666666655554321 10
Q ss_pred HhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhh
Q 005268 481 GRAGHLGMAHNFIQNMPVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 545 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (705)
..++ ..+|..+...+...|++++|...++++++..| ++.....+..+
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 0111 44566666667777777777777777777666 44444444433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=4.1e-05 Score=78.30 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLF 480 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 480 (705)
|..+...+.+.|++++|++.|++.++. .|+.. .....+++. ...| +...|..+..+|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHHHH
Confidence 666667777777777777777776652 11100 000011110 1222 345788888999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHH
Q 005268 481 GRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 557 (705)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 557 (705)
.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4555 477899999999999999999999999999999999999999998888887776654
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=5e-05 Score=80.15 Aligned_cols=125 Identities=10% Similarity=0.027 Sum_probs=93.1
Q ss_pred HhccCcHHHHHHHHHHhHHhhC--CcC----CcchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 005268 444 CSHSGLVSEGQRYFHMMQEEFG--IKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGA 507 (705)
Q Consensus 444 ~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 507 (705)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567777888777776654321 112 1346777888888888888888877665 23354 457899
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCcchh---hhhhhhhhhcCCcchHHHHHHHHHhCCCc
Q 005268 508 LLGACRIHGNMELGAVASDRLFE-----VDSENVGYY---VLMSNIYANVGKWEGVDEVRSLARDRGLK 568 (705)
Q Consensus 508 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 568 (705)
|...|...|++++|+.+++++++ +.|+.|.+- ..|...+..+|++++|..++..+++...+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999886 467776553 56788889999999999999999876443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=3.1e-05 Score=78.29 Aligned_cols=151 Identities=10% Similarity=-0.000 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005268 368 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 447 (705)
Q Consensus 368 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 447 (705)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788889999999999999988653221111 1222333344333221 13677777888889
Q ss_pred CcHHHHHHHHHHhHHhhCCcC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHH
Q 005268 448 GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA-CRIHGNMELGAV 523 (705)
Q Consensus 448 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 523 (705)
|++++|+..++...+. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 45 5678888889999999999999999887 45564 4455555554 334566788889
Q ss_pred HHHHHhccCCCCc
Q 005268 524 ASDRLFEVDSENV 536 (705)
Q Consensus 524 ~~~~~~~~~p~~~ 536 (705)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999998764
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=2.3e-05 Score=65.18 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=44.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
..+..+...|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++..|+++...
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34445555555555555555555554 2223 356777777788888888888888888888888776543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00041 Score=72.61 Aligned_cols=121 Identities=8% Similarity=-0.028 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHhhCC-----CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCCH-HHHHHHH
Q 005268 376 DMYGKCGRIDDAMSLFYQVP-----RSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDE--GV--RPDH-ITFVSLL 441 (705)
Q Consensus 376 ~~y~k~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~~-~t~~~ll 441 (705)
..+...|+.+.|..+++... ..+ ...+..+...|...|++++|..++++.... +. +|.. .++..++
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 34444566666666665443 111 123566777777888888888888777653 11 2222 3666777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 442 TACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 442 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
..|...|++++|..+++.......-.++ ...+..++..+...|++++|...|.+.
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7888888888888888776543211122 245666677777888888887766544
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=7.8e-05 Score=65.49 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cch
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 472 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 472 (705)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444555555555555555555442100 11 124555555666666777776666665442111111 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNMP----VRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVD 532 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 532 (705)
+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777665541 0111 3456777788888899999988888877654
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=3.2e-05 Score=63.25 Aligned_cols=90 Identities=9% Similarity=-0.047 Sum_probs=72.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchhhh
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVL 541 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 541 (705)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667778888888888888888776 2334 57789999999999999999999999999999988 667778
Q ss_pred hhhhhhhcCCcchHHHHH
Q 005268 542 MSNIYANVGKWEGVDEVR 559 (705)
Q Consensus 542 l~~~~~~~g~~~~a~~~~ 559 (705)
++.++...|++++|...+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 888888888877775544
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.75 E-value=8.2e-05 Score=76.04 Aligned_cols=112 Identities=7% Similarity=-0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACR 513 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 513 (705)
..+..+...+...|++++|.+.|+...+.. |.. ...-..+++.. ..| +..+|..+...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777665421 100 00001111111 223 4568899999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 514 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998875
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.73 E-value=6.3e-05 Score=60.44 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 501 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 501 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999988764
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00016 Score=76.33 Aligned_cols=65 Identities=9% Similarity=-0.038 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56888999999999999999999999999999999999999999999999999999999988753
No 196
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.72 E-value=6.2e-05 Score=66.75 Aligned_cols=74 Identities=11% Similarity=-0.043 Sum_probs=59.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-chhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV-GYYVLMSN 544 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~ 544 (705)
..|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46777888888888888888888776 3344 577899999999999999999999999999999887 43444433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00012 Score=57.16 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhh
Q 005268 471 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 548 (705)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (705)
..+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45666677777777888777777665 2233 567888888899999999999999999999999988888888887765
Q ss_pred cC
Q 005268 549 VG 550 (705)
Q Consensus 549 ~g 550 (705)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 44
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=7.5e-05 Score=61.71 Aligned_cols=77 Identities=8% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 489 AHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 489 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555544 3334 57788888899999999999999999999999999889999999999999999999999888764
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=3.3e-05 Score=66.77 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=64.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCcchhhhhhhhhhhc
Q 005268 482 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN----------MELGAVASDRLFEVDSENVGYYVLMSNIYANV 549 (705)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (705)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444556666555554 2233 45566666666665554 56999999999999999999999999999987
Q ss_pred C-----------CcchHHHHHHHHHhCC
Q 005268 550 G-----------KWEGVDEVRSLARDRG 566 (705)
Q Consensus 550 g-----------~~~~a~~~~~~m~~~~ 566 (705)
| ++++|.+.++++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998764
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=8.1e-05 Score=64.37 Aligned_cols=100 Identities=7% Similarity=-0.085 Sum_probs=59.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHH
Q 005268 410 GIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 488 (705)
Q Consensus 410 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 488 (705)
.+.+++++|++.+++..+. .|+ ...|..+..++...++++.+....+ .+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 4455667777777777763 343 4456656666666655432211110 1335
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcc
Q 005268 489 AHNFIQNM-PVRPD-ASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 489 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
|+..|++. .+.|+ ..+|..+..+|... |++++|+..|+++++++|++..
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 55555444 23343 44555666666554 5899999999999999998753
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.44 E-value=0.00034 Score=55.00 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 499 RPDASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 499 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
++|+..|..+..++...++ .++|...++++++++|+++.+...++..+...|++++|...|+.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888876555 69999999999999999999999999999999999999999999988754
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.00017 Score=76.19 Aligned_cols=114 Identities=10% Similarity=-0.033 Sum_probs=86.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc---chhh
Q 005268 479 LFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFE-----VDSENV---GYYV 540 (705)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 540 (705)
.+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 12344 45889999999999999999999999886 356554 4577
Q ss_pred hhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHH
Q 005268 541 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610 (705)
Q Consensus 541 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 610 (705)
.|+.+|..+|++++|..+++++.+...+ .-...||...++...+.....++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988753210 112459988887776666555443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00032 Score=57.11 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 500 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 500 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788999999999999999999999999999999999999999999999999999999988753
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0011 Score=56.76 Aligned_cols=110 Identities=10% Similarity=-0.047 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHh----cCCHHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGM 488 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 488 (705)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45666777777776665 33333 444555556666666666665542 233444555555544 445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcc
Q 005268 489 AHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEV 531 (705)
Q Consensus 489 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 531 (705)
|.+.|++.-..-++..+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555544222334444444444444 44444444444444443
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.00022 Score=74.14 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=84.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-----CCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCc---chh
Q 005268 478 DLFGRAGHLGMAHNFIQNM-P-----VRP---D-ASIWGALLGACRIHGNMELGAVASDRLFEV-----DSENV---GYY 539 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~-----~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 539 (705)
.-+.+.|++++|++++++. . +.| + ..+++.|..+|...|++++|+.++++++++ .|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667777777777654 1 222 2 447888889999999999999999988763 45554 457
Q ss_pred hhhhhhhhhcCCcchHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHH
Q 005268 540 VLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 610 (705)
Q Consensus 540 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 610 (705)
..|+.+|..+|++++|..+++++.+.-. + .-...||...+++..+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999998876311 0 112469999998888888877775
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.0026 Score=68.79 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhhCCcC-CcchHHHHHHHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGL----------VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLF 480 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 480 (705)
...++|++.++++++ +.|+.. .|+.--.++.+.|+ +++++++++.+.+. .| +...|..-.-++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 345688999999999 567754 56655555666666 89999999999864 45 456788888888
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchhhhhhhhhhhc------
Q 005268 481 GRAG--HLGMAHNFIQNM-PVR-PDASIWGALLGACRIHG-NMELGAVASDRLFEVDSENVGYYVLMSNIYANV------ 549 (705)
Q Consensus 481 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 549 (705)
.+.| ++++|+++++++ ... .|...|+.-.......| .++++.+.++++++.+|.|.++|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999998 333 46889999999999999 899999999999999999999999888887664
Q ss_pred --------CCcchHHHHHHHHHhCC
Q 005268 550 --------GKWEGVDEVRSLARDRG 566 (705)
Q Consensus 550 --------g~~~~a~~~~~~m~~~~ 566 (705)
++++++.+.++.+....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 55788888888887653
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.0033 Score=62.38 Aligned_cols=140 Identities=9% Similarity=-0.027 Sum_probs=80.5
Q ss_pred CCCCcchHHHHHHHHHh--cCC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cC-----cHHHHHHHHHHh
Q 005268 395 PRSSSVPWNAIISCHGI--HGQ---GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSH---SG-----LVSEGQRYFHMM 460 (705)
Q Consensus 395 ~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~m 460 (705)
...+...|...+.+... .++ ..+|+.+|++.++ ..|+. ..+..+..++.. .+ ......+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34567778877766543 333 4789999999999 67875 345444444431 00 111111111111
Q ss_pred HHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 461 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 461 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
........+...|..+.-.+...|++++|...++++ ..+|+...|..+...+...|+.++|...+++++.++|..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 110011334556666655565667777777777666 3456666666666667777777777777777777777543
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.20 E-value=0.0013 Score=51.09 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 502 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 502 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678888999999999999999999999999999999999999999999999999999998775
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.18 E-value=0.0014 Score=56.12 Aligned_cols=113 Identities=6% Similarity=-0.077 Sum_probs=91.3
Q ss_pred cCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 005268 447 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGA 522 (705)
Q Consensus 447 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 522 (705)
.+++++|.++|+...+. | .|+ .. |..+|...+.+++|.+.|++.-...+...+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34678899999888764 4 233 33 778888888899999999887444678888888888887 78999999
Q ss_pred HHHHHHhccCCCCcchhhhhhhhhhh----cCCcchHHHHHHHHHhCCC
Q 005268 523 VASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 567 (705)
..++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998876 467888889999988 8899999999999888764
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.00022 Score=73.93 Aligned_cols=83 Identities=6% Similarity=0.018 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCc---chhhhhhh
Q 005268 483 AGHLGMAHNFIQNM---------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV-----DSENV---GYYVLMSN 544 (705)
Q Consensus 483 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 544 (705)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|++| ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 12333 357888888888899999998888888763 45544 45778999
Q ss_pred hhhhcCCcchHHHHHHHHHhC
Q 005268 545 IYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 545 ~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+|..+|++++|..+++++.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999888753
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.86 E-value=0.0039 Score=49.64 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005268 398 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 462 (705)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 462 (705)
+...|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344666666666666666666666666663 333 34566666666666667766666665553
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.004 Score=64.46 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=66.2
Q ss_pred ccCcHHHHHHHHHHhHHhhC--CcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 005268 446 HSGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGALL 509 (705)
Q Consensus 446 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll 509 (705)
..|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777776654321 2222 256777788888888888888777665 23455 45789999
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----cCCCCcchh
Q 005268 510 GACRIHGNMELGAVASDRLFE-----VDSENVGYY 539 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 539 (705)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999886 467766543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.043 Score=62.40 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=75.8
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHH
Q 005268 275 MYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 354 (705)
Q Consensus 275 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~ 354 (705)
....+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHH
Confidence 4567788999988887764 567899999999999999999999988765 2334444555666665555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005268 355 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 424 (705)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (705)
+-+.+...| -++....+|.++|++++|.+++ .+.+++++|..+-+.
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 555444443 1233444566677777777665 344666666665543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0025 Score=50.43 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 476 MVDLFGRAGHLGMAHNFIQNM-PVRP-DAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
....+.+.|++++|...+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666655 2223 344 566666666666666666666666666666655544
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.76 E-value=0.0048 Score=52.63 Aligned_cols=90 Identities=14% Similarity=0.064 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCccCCcee
Q 005268 500 PDASIWGALLGACRIHG---NMELGAVASDRLFEVD-S-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWS 574 (705)
Q Consensus 500 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 574 (705)
++..+.-.+.+++.+.+ ++++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56777777777887777 5668888888888877 6 45666777888888888888888888887765
Q ss_pred EEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcc
Q 005268 575 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615 (705)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 615 (705)
.|...+.......+.+++++.|++
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 333344444455566667776655
No 216
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.0054 Score=50.16 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444445555555544442 222 2344444444455555555555554443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.60 E-value=0.0051 Score=48.59 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=62.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCcC-Ccc-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 005268 440 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLK-HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIH 515 (705)
Q Consensus 440 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 515 (705)
....+...|++++|.+.|+...+. .| +.. .+..+...|.+.|++++|.+.|++. ...|+ ...|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 445677889999999999988764 45 446 7888888999999999999998877 33444 223311
Q ss_pred CChhHHHHHHHHHhccCCCCcc
Q 005268 516 GNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
+.+.++...+++....+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 5567777888887777776543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.0087 Score=62.02 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCc
Q 005268 472 HYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFE-----VDSENV 536 (705)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 536 (705)
+++.|+.+|...|++++|+.+++++ +..|+ ..+++.|...|...|++++|+.+++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4555555555556666665555443 23344 44678888888888888888888888876 467776
Q ss_pred chhh
Q 005268 537 GYYV 540 (705)
Q Consensus 537 ~~~~ 540 (705)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.58 E-value=0.0012 Score=66.71 Aligned_cols=238 Identities=11% Similarity=0.073 Sum_probs=155.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 005268 163 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 242 (705)
Q Consensus 163 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 242 (705)
.+.+|+.|..++.+.+++.+|.+-| +...|+..|..+|....+.|.+++-+..+...++..-.| ..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4456667777777777766666554 333566667777777777777777777666555443333 333456677777
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC------------------------CCChh
Q 005268 243 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP------------------------VKDVI 298 (705)
Q Consensus 243 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------~~~~~ 298 (705)
.+++.+-+++. -.||..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 129 ~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 129 TNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp SCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 77766544443 24455445566666777777777777776554 23778
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005268 299 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 378 (705)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 378 (705)
+|-.+-.+|...+.+.-|.-.--.+. +.| ..+..++.-|...|-+++-..+++..+.. -....-+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI----vha--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV----VHA--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH----CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc----ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHH
Confidence 99999999999999887654433333 223 34556778888899999888888876632 235677888888888
Q ss_pred HhcCCHHHHHHHHhhCC----CC-------CcchHHHHHHHHHhcCChHHHHH
Q 005268 379 GKCGRIDDAMSLFYQVP----RS-------SSVPWNAIISCHGIHGQGDKALN 420 (705)
Q Consensus 379 ~k~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 420 (705)
+|- ++++-.+-++... -| ....|..++-.|.+-.+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 4555555444332 22 22339999999998888887653
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.40 E-value=0.12 Score=42.30 Aligned_cols=139 Identities=10% Similarity=0.026 Sum_probs=95.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHH
Q 005268 411 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 490 (705)
Q Consensus 411 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 490 (705)
..|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+- .| +..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHHH
Confidence 356667777777776653 23334444444333444444445555444322 22 23577888877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCCc
Q 005268 491 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 568 (705)
Q Consensus 491 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 568 (705)
..+-.+. .+....+.-++....+|.-+.-.+++..++.-+|.+|+...-++++|.+.|+..+|.+++.++-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7777765 244445677888889999999999999977767668899999999999999999999999999999984
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.35 E-value=0.0014 Score=66.27 Aligned_cols=433 Identities=11% Similarity=0.054 Sum_probs=248.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc
Q 005268 62 DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141 (705)
Q Consensus 62 ~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (705)
.+.+|..|..++.+.|++.+|.+-|=+ ..|+..|..+|.+..+.|.+++-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 456788899999999999988876644 3466678899999999999999888877666542 344555678888888
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC------------------------CCeeh
Q 005268 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------------RDVVS 197 (705)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 197 (705)
.+++.+-.+++ -.||..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88876544433 245665566677777788888888888876632 36678
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 005268 198 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 277 (705)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 277 (705)
|-.+-.+|...+.+.-|--.--.+.- .|| .+..++.-|...|.+++-..+++.-... -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHH
Confidence 88888888888877766544433321 111 1223344466667777766666655421 2345678888888888
Q ss_pred hcCCHHHHHHHHh----cCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhcc
Q 005268 278 KLGIINSACAVFE----GLPVK-------DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV 346 (705)
Q Consensus 278 ~~g~~~~A~~~f~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~ 346 (705)
|-. .++-.+.++ ++.-| ....|.-++-.|.+..+++.|... |.+ -.|+...-........+.
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~---h~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMN---HPTDAWKEGQFKDIITKV 347 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTS---CHHHHCCGGGGTTTGGGC
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHh---CChhhccHHHHHHHHHHc
Confidence 863 333333333 22222 345699999999999888877543 433 223333333334444455
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHH-------------HHHHhcCCHHHHHHHHhhCCCCCcchHH-HHHHHHHhc
Q 005268 347 GALRQGIKIHARVIKNCLCFDVFVATCLV-------------DMYGKCGRIDDAMSLFYQVPRSSSVPWN-AIISCHGIH 412 (705)
Q Consensus 347 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li-------------~~y~k~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~ 412 (705)
.+.+---+....-++. .+...+-|+ ..+.|.|++.-....+......|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 5544332222222221 122233333 3444445444444444444444443322 233333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 492 (705)
.|+ .+...-+.+|-.-..+.-|.++ ++ .+-.+.-..-...|.+.++++++.++
T Consensus 424 EDy-------------------~~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 424 EDY-------------------QALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp TCC-------------------HHHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hhH-------------------HHHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHHHHH
Confidence 333 2233333333333333333332 11 11122223334567888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHH
Q 005268 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 558 (705)
Q Consensus 493 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 558 (705)
.++=..-.|. +...+..|+.+.++++++-.++.+ +...+....-.|...=+.+-+.++
T Consensus 477 ~KkDklykDA------ietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKKDSLYKDA------MQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSTTCCTTGG------GTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHhcccHHHH------HHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence 7554322232 333456777777777777766543 334555555556566666655543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.29 E-value=0.0085 Score=56.96 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=70.0
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-cchhhhhhhhhhhc-CCcch
Q 005268 486 LGMAHNFIQNM-PVRPD---ASIWGALLGACRI-----HGNMELGAVASDRLFEVDSEN-VGYYVLMSNIYANV-GKWEG 554 (705)
Q Consensus 486 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 554 (705)
..+|...+++. .+.|+ ...|.+|...|.+ -|+.++|++.|+++++++|+. ...++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555 45666 5678888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 005268 555 VDEVRSLARDRGLKKTPG 572 (705)
Q Consensus 555 a~~~~~~m~~~~~~~~~~ 572 (705)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876654454
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.00 E-value=0.042 Score=54.54 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHhHHhhCCcCCc-chHHHHHHHHH----hcC-------CHHHHHHH
Q 005268 430 VRPDHITFVSLLTACS--H---SGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG----RAG-------HLGMAHNF 492 (705)
Q Consensus 430 ~~p~~~t~~~ll~a~~--~---~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~----~~g-------~~~~A~~~ 492 (705)
.+.+...|...+.+.. . .....+|+.+|++..+. .|+- ..|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4555666777666543 2 33468899999998854 7763 33433332221 111 11223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCCC
Q 005268 493 IQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 567 (705)
Q Consensus 493 ~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 567 (705)
...+. .+.+..+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.++++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23332 234678888888888888999999999999999997 566788999999999999999999999887643
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.94 E-value=0.26 Score=55.92 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=53.2
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005268 378 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 457 (705)
Q Consensus 378 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 457 (705)
..++|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345666777766665552 344577777777777777777777766543 223333344455554444433
Q ss_pred HHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 458 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 458 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
+..... | .++.-..+|.+.|++++|++++.++
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 322221 1 2233334455556666666665554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.57 E-value=0.036 Score=43.17 Aligned_cols=68 Identities=6% Similarity=0.006 Sum_probs=51.5
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 468 PHLKHYGCMVDLFGRAGH---LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 468 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455667777777754444 68888888776 3445 46677788888999999999999999999999873
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.39 E-value=0.12 Score=44.02 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHH
Q 005268 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSG---LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 492 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 492 (705)
..+.+-|.+....|. ++..+-..+..++.+++ ++++|+.+|+...+. . .|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~----------------------- 68 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE----------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH-----------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc-----------------------
Confidence 344555555555443 55555555555666666 555777777666543 1 120
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchh
Q 005268 493 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 539 (705)
Q Consensus 493 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (705)
-+...+-.|.-+|.+.|++++|.+.++.+++++|+|..+.
T Consensus 69 -------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 69 -------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp -------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 0123344566788999999999999999999999876543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.27 E-value=0.053 Score=43.27 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhh
Q 005268 474 GCMVDLFGRAGHLGMAHNFIQNMP---------VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 542 (705)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (705)
-.|...+.+.|+++.|...++.+- -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 334444445555555544443330 123466888999999999999999999999999999887664444
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.84 Score=39.84 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=67.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHH
Q 005268 274 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 353 (705)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 353 (705)
+...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHH
Confidence 3456788999998887765 4677899999999999999999999988765 334444555566666555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 005268 354 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 394 (705)
Q Consensus 354 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 394 (705)
.+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5544444443 1233333344556666666665443
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.93 E-value=5 Score=43.18 Aligned_cols=268 Identities=7% Similarity=0.020 Sum_probs=132.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCC
Q 005268 251 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 330 (705)
Q Consensus 251 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 330 (705)
++-..+.+..+.+......+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-. .| .
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~-~ 133 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TG-K 133 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CS-S
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CC-C
Confidence 33344444332444445556667777888889888887776 444555555567777888888878777777654 22 1
Q ss_pred CCcccccchhHHhhccCchHH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005268 331 PNQGTYVSILPAYSHVGALRQ--GIKIHARVIKNC-----------LCFDV-FVATCLVDMYGKCGRIDDAMSLFYQVPR 396 (705)
Q Consensus 331 p~~~t~~~ll~a~~~~~~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~ 396 (705)
........++....+.|.+.. ..+-+..+...| ++++. .....++..+.+-..+ ........
T Consensus 134 ~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~~- 209 (618)
T 1qsa_A 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG- 209 (618)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-
T ss_pred CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhccC-
Confidence 223334445555444333221 111111111111 11111 1112222222211111 11111111
Q ss_pred CCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC
Q 005268 397 SSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT----FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 469 (705)
Q Consensus 397 ~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 469 (705)
++... ...-+.-++ ..+++.|..+|......+ ..+... ...+.......+...++...+...... .++
T Consensus 210 ~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~ 284 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQS 284 (618)
T ss_dssp CCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCC
T ss_pred CChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCC
Confidence 11111 111122222 347788888888876543 223222 222232334445345556666554322 233
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCChhHHHHHHHHHhc
Q 005268 470 LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIW-GALLGACRIHGNMELGAVASDRLFE 530 (705)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 530 (705)
.....-.+....+.|+++.|...|+.|+..+ +..-| -=+..+....|+.++|...|+++.+
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3233334444457799999999999886432 21211 1234466778899999998888875
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.5 Score=41.25 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=84.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005268 377 MYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 456 (705)
Q Consensus 377 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 456 (705)
...++|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888887766 4556688888888888888888888887765 44455556667777665554
Q ss_pred HHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005268 457 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 528 (705)
Q Consensus 457 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 528 (705)
-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|..+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4333322 1 34444555667888888888888875333222 1234467777777777665
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.68 E-value=0.092 Score=42.96 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=12.8
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
-++.+.|++++|.+.++.+++.+|+|
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555544
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.92 E-value=0.66 Score=38.63 Aligned_cols=67 Identities=4% Similarity=-0.049 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCC-cchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 499 RPDASIWGALLGACRIHGN---MELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 499 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
.|+..+--.+.+++.+..+ ..+++.+++.++..+|.+ -.....|+-++.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3555555556666666554 346777777777766643 233445677778888888888877777654
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.64 E-value=0.68 Score=44.02 Aligned_cols=112 Identities=10% Similarity=0.044 Sum_probs=72.2
Q ss_pred hcCCHHHHHHHHhhCCCCCcch--HHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHh
Q 005268 380 KCGRIDDAMSLFYQVPRSSSVP--WNAIISC-HGIH--GQ------GDKALNFFRQMLDEGVRPD---HITFVSLLTACS 445 (705)
Q Consensus 380 k~g~~~~A~~~~~~~~~~~~~~--~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 445 (705)
+.|+..+-.+.+.+..+.++.. |..++.+ +... |+ ..+|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 3455555556666666555443 7666653 3332 32 3567777777777 6777 346777777777
Q ss_pred cc-----CcHHHHHHHHHHhHHhhCCcC--CcchHHHHHHHHHhc-CCHHHHHHHHHhC
Q 005268 446 HS-----GLVSEGQRYFHMMQEEFGIKP--HLKHYGCMVDLFGRA-GHLGMAHNFIQNM 496 (705)
Q Consensus 446 ~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 496 (705)
.. |+.++|.+.|++..+ +.| +..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 73 788888888887774 355 366677777777774 7777777777665
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.18 Score=55.46 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=49.6
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 510 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
.-|...|+++.|+.+++++...-|.+-.++..|+.+|...|+|+.|.-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678999999999999999999999999999999999999999999888774
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.56 E-value=0.68 Score=37.82 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhHHhhCCcC--CcchHHHHHHHHHhcCCHH
Q 005268 413 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE---GQRYFHMMQEEFGIKP--HLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 413 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~ 487 (705)
.....+.+-|.+....|. |+..+-..+..++.++....+ |+.++....+. + .| .....-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344555666666666553 666666666677777776555 77777776643 1 13 2334445667788888888
Q ss_pred HHHHHHHhC-CCCCC
Q 005268 488 MAHNFIQNM-PVRPD 501 (705)
Q Consensus 488 ~A~~~~~~~-~~~p~ 501 (705)
+|.+.++.+ ..+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888776 34554
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.23 E-value=0.69 Score=36.56 Aligned_cols=65 Identities=8% Similarity=-0.092 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCcchhhhhhhhhhhcCCcchHHHHHHHHHhC
Q 005268 501 DASIWGALLGACRIHGNMELGAVASDRLFEVD-------SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 565 (705)
Q Consensus 501 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 565 (705)
+..-.-.|...+...|+++.|..-++++++.. +..+..+..|+.+|.+.|++++|...++.+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455678899999999999999999998753 234566889999999999999999999998765
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.85 E-value=7.3 Score=32.01 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCC
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 466 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 466 (705)
.+.-+..+...|.-++-.+++.++... .+|++.....+.+||.+.|+..++.+++.+..++ |+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 344455566666666666666664332 4666666666777777777777777777666654 44
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.98 E-value=0.92 Score=37.23 Aligned_cols=44 Identities=7% Similarity=0.057 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccCCCC-cchhhhhhhhhhhcCCcchHHHHHHHHH
Q 005268 520 LGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLAR 563 (705)
Q Consensus 520 ~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 563 (705)
+|+.+++.++..+|.. -..+..|+-++.+.|++++|++..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555544444421 2223344444555555555555554444
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.88 E-value=35 Score=38.45 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=129.0
Q ss_pred HHccCChhhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----------hhHHHHHHHHH
Q 005268 240 VAQLNDCRNSRSVHGFIMRRG-WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP-VKD----------VISWNTLITGY 307 (705)
Q Consensus 240 ~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~----------~~~~~~li~~~ 307 (705)
....++.+++..++......+ .-.+.......+.-+...+|.-+++..++.... ..+ +..-.++.-|+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777766665543211 012233444555555666666666666554432 111 11223333344
Q ss_pred HHcCC-hhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCCH
Q 005268 308 AQNGL-ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG--KCGRI 384 (705)
Q Consensus 308 ~~~g~-~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--k~g~~ 384 (705)
+-.|. -+++.+.+..+............-.++...+...|+.+....++..+.+.. +..+...++.+++ -.|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 44443 245666666665411100000111122233445677777777777666532 2233333444433 55777
Q ss_pred HHHHHHHhhCC-CCCcc-hHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005268 385 DDAMSLFYQVP-RSSSV-PWN---AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 459 (705)
Q Consensus 385 ~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 459 (705)
+.+..+.+.+. ..+.. -|. ++..+|+-.|+.....++++.+.... ..+......+.-++...|..+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 77766666654 22322 243 33456677778766666888877631 12222222222244445555555666654
Q ss_pred hHHhhCCcCCcchHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 005268 460 MQEEFGIKPHLKHYGCMVDLFGRAGHL-GMAHNFIQNMPVRPDASIWGALLGA 511 (705)
Q Consensus 460 m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ll~~ 511 (705)
+.+ ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+-..-+-+
T Consensus 620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 443 2234443334444444444443 5677777777555665544333333
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.40 E-value=3.1 Score=34.93 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=63.0
Q ss_pred CCCCcchHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHHH---HhccCcHHHHHHHHHHhH
Q 005268 395 PRSSSVPWNAIISCHGIHGQG------DKALNFFRQMLDEGVRPDHI----TFVSLLTA---CSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 395 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~ 461 (705)
...|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|..+.-- +...+++++|+++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366777788888887777888 7778888877775 666531 11111110 011133333333333332
Q ss_pred HhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 005268 462 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 536 (705)
Q Consensus 462 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (705)
+. ..+ =..+|-....--.++|++..|.+++.+++.+.|.+.
T Consensus 88 ~~---------------------------------hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 AN---------------------------------CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HH---------------------------------CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HH---------------------------------hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 21 011 166676666667778888888888888888877543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.69 E-value=20 Score=36.83 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHh-CCCCchhHHHHHHH----HHHcc
Q 005268 108 GNAVEALDILDEMRLE-----GVSMDPITVASILPVCARSDNILSGLLIHLYIVKH-GLEFNLFVSNNLIN----MYAKF 177 (705)
Q Consensus 108 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~----~y~~~ 177 (705)
|++++|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+. ....++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 7888999888666542 23334556777888899999998887766655443 32222 2233332 22222
Q ss_pred CCH--HHHHHHHhccCC---CCe-------ehHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCChh-----hHHHHHHHH
Q 005268 178 GMM--RHALRVFDQMME---RDV-------VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL-----TLVSLTSIV 240 (705)
Q Consensus 178 g~~--~~A~~~f~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~ 240 (705)
... +.-..+.+.... .-. .....|...|...|++.+|.+++..+...-...+.. .+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222 222333333321 111 112456777888888888888888885432222211 233344555
Q ss_pred HccCChhhHHHHHHHH
Q 005268 241 AQLNDCRNSRSVHGFI 256 (705)
Q Consensus 241 ~~~~~~~~a~~i~~~~ 256 (705)
...+++..+..+...+
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5556666665555554
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.59 E-value=41 Score=37.83 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=128.6
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCh--hHHHHHHHHHHHcCChhHHHHHHHhhhhcCCC------CCCcc--cccchh
Q 005268 275 MYAKLGIINSACAVFEGLPV----KDV--ISWNTLITGYAQNGLASEAIEVFQMMEECNEI------NPNQG--TYVSIL 340 (705)
Q Consensus 275 ~y~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------~p~~~--t~~~ll 340 (705)
+....|+.+++..+++.-.. .+. ..-..+.-|....|..+++..++......... .+... ....+.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888889999887664 222 23334455667777777888877776541110 00000 111222
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCCh
Q 005268 341 PAYSHVGALRQGIKIHARVIKNCLCFDV--FVATCLVDMYGKCGRIDDAMSLFYQVPR--SS-SVPWNAIISCHGIHGQG 415 (705)
Q Consensus 341 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~ 415 (705)
-++...++ +++...+..++...- +.. ...-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22333333 344444444443211 111 1122333344556777776776665432 22 22234444556678999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHH
Q 005268 416 DKALNFFRQMLDEGVRPDH-ITFV---SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 491 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 491 (705)
+.+..+.+.+... +|. .-|. .+.-+|+..|+.....++++.+... ...++.....+.-++.-.|+.+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988873 333 3343 3344788899988888898887753 22222222333333444666666666
Q ss_pred HHHhCCCCCCHHHHHHH--HHHHHhcCCh-hHHHHHHHHHh
Q 005268 492 FIQNMPVRPDASIWGAL--LGACRIHGNM-ELGAVASDRLF 529 (705)
Q Consensus 492 ~~~~~~~~p~~~~~~~l--l~~~~~~g~~-~~a~~~~~~~~ 529 (705)
+++.+....|..+-... .-|....|+. .++...+..+.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66544322333332222 2233333333 45666666654
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.59 E-value=22 Score=34.60 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHhHHHHhh
Q 005268 65 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL----DEMRLEGVSMDPITVASILPVCA 140 (705)
Q Consensus 65 ~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 140 (705)
.+.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 566677778889999999887432 234566778877776665 44456788899888877777776
Q ss_pred cCCC--hHH---HHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhh
Q 005268 141 RSDN--ILS---GLLIHLYIVKHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 213 (705)
Q Consensus 141 ~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 213 (705)
.... ... ..+....-.+.| ..-|+.....+...|.+.+++.+|+.-|=.-..+++..+..|+..+.+.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 5543 121 222233333444 445778888888999999999999988842222223566555544444443333
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.93 E-value=23 Score=34.16 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=86.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHH----HHHHHHCCCCCChhhHHHHHHHHHc
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF----FTTMQQAGIQPDLLTLVSLTSIVAQ 242 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 242 (705)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445666678888888888876322 2345566776655554 4445566888888877777777665
Q ss_pred cCCh-----hhHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CCh
Q 005268 243 LNDC-----RNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN---GLA 313 (705)
Q Consensus 243 ~~~~-----~~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~ 313 (705)
...- ........+..+.|. ..-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 4322 222333333444432 2247788899999999999999999988633222455665555555444 544
Q ss_pred hHH
Q 005268 314 SEA 316 (705)
Q Consensus 314 ~~A 316 (705)
.++
T Consensus 185 ~e~ 187 (312)
T 2wpv_A 185 STV 187 (312)
T ss_dssp HHH
T ss_pred chH
Confidence 443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.82 E-value=8.5 Score=29.53 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 428 (705)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||..+|-+|-. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4556666555555443 22222222345667899999999999999999999988865 4668888888888788777
Q ss_pred CCCCCHHHHHH
Q 005268 429 GVRPDHITFVS 439 (705)
Q Consensus 429 g~~p~~~t~~~ 439 (705)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.21 E-value=8 Score=29.61 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005268 349 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 428 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 428 (705)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||..+|-+|-. .+.|..+++..-+.++-.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4556556555555443 22222222345667899999999999999999999988755 4678888888888888887
Q ss_pred CCCCCHHHHHH
Q 005268 429 GVRPDHITFVS 439 (705)
Q Consensus 429 g~~p~~~t~~~ 439 (705)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.17 E-value=31 Score=33.23 Aligned_cols=169 Identities=5% Similarity=0.009 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHH----HHhhhhcCCCCCCcccccchhHHh
Q 005268 268 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV----FQMMEECNEINPNQGTYVSILPAY 343 (705)
Q Consensus 268 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~p~~~t~~~ll~a~ 343 (705)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+ .+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 344555568888899998887542 22334555665554443 333344 56666666555555554
Q ss_pred hccCchH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhc---C
Q 005268 344 SHVGALR-QGIKIHARVIK----NC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH---G 413 (705)
Q Consensus 344 ~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 413 (705)
.....-+ .-..+...+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 4322111 11233333333 22 2237788888999999999999999877532222333333333333222 2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005268 414 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 463 (705)
Q Consensus 414 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 463 (705)
...++ +...-..++ -|...|++..|..+|+...+.
T Consensus 183 ~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 22221 111112222 355678899999999877654
No 248
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.92 E-value=36 Score=36.70 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhc
Q 005268 96 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 141 (705)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (705)
.| ++|--+.+.|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 44 4566788899999999888766431 11112456666676663
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.93 E-value=39 Score=32.80 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHH----HHHHHCCCCCChhhHHHHHHHHHc
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFF----TTMQQAGIQPDLLTLVSLTSIVAQ 242 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 242 (705)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++- +...+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344556678888888888875322 33456667766555544 555667888888887777777766
Q ss_pred cCChh-----hHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 005268 243 LNDCR-----NSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 311 (705)
Q Consensus 243 ~~~~~-----~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 311 (705)
...-+ .......+-.+.|. ..-|+.....+...|.+.+++.+|+..|-.-..+....+..|+.-+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 55422 12223333344331 23467778888899999999999988884322222355655554444433
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.65 E-value=11 Score=31.80 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 107 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172 (705)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 172 (705)
.+++++|.++|+.++..+-.- ...|..-..-=.+.|++..|++++...+..+..|....-.++-+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 478888899998887642222 33333333334678889999999988888877665544444433
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.07 E-value=8.5 Score=32.99 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhH
Q 005268 436 TFVSLLTACSHSGLVSEGQRYFHMMQ 461 (705)
Q Consensus 436 t~~~ll~a~~~~g~~~~a~~~~~~m~ 461 (705)
++..+..++...+.+..|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444455555555555555555543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.52 E-value=9 Score=29.56 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 415 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 415 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
.-+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 44666677777777899999999999999999999999999999887653 334556777765
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.37 E-value=6.3 Score=43.32 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=44.0
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 005268 239 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 293 (705)
Q Consensus 239 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 293 (705)
-|.+.++++.|..+-...+.. .|.+-.+|..|...|.+.|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 355677788888887777776 47788899999999999999999999999887
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.32 E-value=11 Score=32.27 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=41.8
Q ss_pred cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 428 EGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-------KHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 428 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34555543 33344556677788888877776655443334442 35677888999999999998888774
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.11 E-value=23 Score=41.53 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCc
Q 005268 269 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 348 (705)
Q Consensus 269 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~ 348 (705)
...++..+.+.+..+-+.++..-.+. +..+--.+...|...|++++|.+.|.+.. .|+.++......+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~-------- 883 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLR-------- 883 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHH--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhc--------
Confidence 34566667778888888776655543 44444556677889999999999998875 34444332221111
Q ss_pred hHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhh----CCCCCc--c--hHHHHHHHHHhcCChHHH
Q 005268 349 LRQGIKIHARVIKNC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQ----VPRSSS--V--PWNAIISCHGIHGQGDKA 418 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~----~~~~~~--~--~~~~li~~~~~~g~~~~A 418 (705)
. +..+.... ...-..-|.-++..+.+.|.++.+.+.-.. ..+.+. . .|..+..++...|++++|
T Consensus 884 --~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 884 --E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp --H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred --c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 11111110 111233466677777777877766655432 222222 1 388999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 005268 419 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 453 (705)
Q Consensus 419 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 453 (705)
...+-.+-.... -...+..|+..++..|.++.-
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 999988876433 345666677766666655443
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.42 E-value=13 Score=37.52 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCcCCcch
Q 005268 405 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE----EFGIKPHLKH 472 (705)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 472 (705)
++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4555667777788887777777642 33566788888888888888888888776543 4577777544
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.95 E-value=16 Score=28.00 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCCCCeehHHHHHHHHHcCCChhhHHHHHHHH
Q 005268 142 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTM 221 (705)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 221 (705)
....++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-+|... +.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456777777777666553 333333334556788999999999999999999999988654 678788888777777
Q ss_pred HHCC
Q 005268 222 QQAG 225 (705)
Q Consensus 222 ~~~g 225 (705)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 6654
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.46 E-value=11 Score=31.39 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 507 ALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 507 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
.|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45668999999999999999999999988544
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.88 E-value=25 Score=27.04 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhh
Q 005268 245 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 324 (705)
Q Consensus 245 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (705)
.-++|..|-+.+...+ . ...+.-.-+..+...|++++|..+.+.+.-||.+.|-+|-.. +.|..+++..-+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~-~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG-E--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-c--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 4566666666666665 2 333333444557789999999999999999999999887654 6688888887777776
Q ss_pred h
Q 005268 325 E 325 (705)
Q Consensus 325 ~ 325 (705)
.
T Consensus 97 ~ 97 (116)
T 2p58_C 97 R 97 (116)
T ss_dssp T
T ss_pred h
Confidence 5
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.69 E-value=15 Score=28.31 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005268 109 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 171 (705)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 171 (705)
+.-+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344566666777777788888888888888888888888888888775542 22234555554
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.32 E-value=92 Score=33.36 Aligned_cols=306 Identities=13% Similarity=0.041 Sum_probs=159.6
Q ss_pred hhcCCchHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCchHHHHHHHHHHhCCCC-CHHHHHHHHHHHHcCCChhHHHH
Q 005268 6 VRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEW-DVFVAASLLHMYCRFGLANVARK 84 (705)
Q Consensus 6 ~~~g~~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ll~~y~~~g~~~~A~~ 84 (705)
.+.|++..+..+-.. +....+.| -..|..+....... ...++-..+.+..-.| ....-+.-+..+.+.+++.....
T Consensus 17 ~~~~~~~~~~~l~~~-l~~~pL~~-yl~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~ 93 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPG-LKDYPLYP-YLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLA 93 (618)
T ss_dssp HHTTCHHHHHHHSGG-GTTSTTHH-HHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHh-hcCCCcHH-HHHHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345666655554433 32211111 12344443333221 2456666666653233 33445666777888999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHH--HHHHHHHHHHhC---
Q 005268 85 LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS--GLLIHLYIVKHG--- 159 (705)
Q Consensus 85 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~g--- 159 (705)
.+.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.+.. ..+-+..+...|
T Consensus 94 ~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~ 171 (618)
T 1qsa_A 94 FSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTG 171 (618)
T ss_dssp HCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHH
T ss_pred hccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Confidence 8877 44444445556777888899888888888887665 3345556666666665554322 222222222222
Q ss_pred --------CCCch-hHHHHHHHHHHccCCHHHHHHHHhccCCCCeeh---HHHHHHHHHcCCChhhHHHHHHHHHHCCCC
Q 005268 160 --------LEFNL-FVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---WNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 227 (705)
Q Consensus 160 --------~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 227 (705)
++++. .....++..+.+-..+ ....... .++... ...-+.-+.+ .+++.|...|....... .
T Consensus 172 ~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~ 245 (618)
T 1qsa_A 172 LVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-Q 245 (618)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-C
Confidence 11111 1122233332222221 2222211 111111 1111222333 37899999998886543 2
Q ss_pred CChhhHHHHHHHHH----ccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHH
Q 005268 228 PDLLTLVSLTSIVA----QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISW 300 (705)
Q Consensus 228 p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~ 300 (705)
.+......+-...+ ..+....+...+....... .+.....-.+..-.+.|+++.|...|+.|+... ....
T Consensus 246 ~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 246 LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC---CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 33333333333332 2232334444444433322 222233444455567899999999999998642 1112
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhhh
Q 005268 301 NTLITGYAQNGLASEAIEVFQMMEE 325 (705)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~ 325 (705)
-=+..++...|+.++|..+|..+..
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2234566788999999999998865
No 262
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.20 E-value=32 Score=37.17 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCC---CCeehHHHHHHHHHcC
Q 005268 166 VSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQS 208 (705)
Q Consensus 166 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 208 (705)
+| ++|-.+.|||++++|.++.++... .-...+-..+..|+..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 45 467778899999999999877743 1123566666777643
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.89 E-value=4.4 Score=40.98 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHh-----CCCccCC
Q 005268 506 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD-----RGLKKTP 571 (705)
Q Consensus 506 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 571 (705)
..++.++...|+.+++...++.++..+|-+...+..|..+|.+.|+..+|.+.|+...+ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34455566677777777777777777777766777777777777777777776666543 3655544
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.68 E-value=50 Score=38.73 Aligned_cols=142 Identities=10% Similarity=-0.003 Sum_probs=84.9
Q ss_pred chhHHhhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---------------
Q 005268 338 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR----SS--------------- 398 (705)
Q Consensus 338 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----~~--------------- 398 (705)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|++... .+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344445556666665554332 233444444566778889999999999987641 00
Q ss_pred ------cch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCc
Q 005268 399 ------SVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--I--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 467 (705)
Q Consensus 399 ------~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 467 (705)
... |.-++..|.++|.++.++++-+..++..-+-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 000 556677777888888888877777664221111 1 4566777788888888887777655432 2
Q ss_pred CCcchHHHHHHHHHhcCCHH
Q 005268 468 PHLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 468 p~~~~~~~li~~~~~~g~~~ 487 (705)
-.......||..++..|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhCCChh
Confidence 22335555666666555444
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.19 E-value=24 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 005268 505 WGALLGACRIHGNMELGAVASDRLFEVDSENVGY 538 (705)
Q Consensus 505 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (705)
+--|.-|+.+.|++++|.+..+.+++.+|+|..+
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3345567788888888888888888888887543
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.17 E-value=26 Score=28.70 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHH
Q 005268 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 478 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 478 (705)
-+..+-++.+....+-|++......|.+|.+.+++.-|.++|+..+.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 355566667777778999999999999999999999999999988765 3444567877765
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.78 E-value=51 Score=30.79 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=63.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCH
Q 005268 408 CHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 486 (705)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 486 (705)
...+.|..++|++....-++. .|. ...=..++..++-.|+++.|.+-++...+ +.|+...-..+..-+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 344567777777777777664 343 33444555677777788887777766653 245432211111111111
Q ss_pred HHHH-HHHHhC--C-CCCCHHHH-HHHHHHHH--hcCChhHHHHHHHHHhccCCCCcc
Q 005268 487 GMAH-NFIQNM--P-VRPDASIW-GALLGACR--IHGNMELGAVASDRLFEVDSENVG 537 (705)
Q Consensus 487 ~~A~-~~~~~~--~-~~p~~~~~-~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 537 (705)
+... ++|..- | +--.+.-| ..|+.+.. ..|+.++|..+-.++++.-|..+.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 222211 1 00012224 33444433 458888888888888877765544
No 268
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.84 E-value=45 Score=32.00 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 493 IQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 493 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
|...+++|. ..++++-++.+.+++|+.-|..+.++++++.|... ..++|+++.....+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444456665 34677888889999999999999999999998421 3356777777766543
No 269
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.34 E-value=70 Score=27.96 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 005268 264 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 312 (705)
Q Consensus 264 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 312 (705)
+|..+....+..+.+.+..+....+.+.+..+|...-...+.++...+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444444443333333333444444333333444444443
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.82 E-value=1.3e+02 Score=30.73 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCcCC----cch
Q 005268 403 NAIISCHGIHGQGDKALNFFRQMLDE--GVRPDH---ITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPH----LKH 472 (705)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~----~~~ 472 (705)
..|...|...|++.+|..++.++... |..+.. ..+...+..|...+++.+|..++..+.... ...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45778888999999999999998753 222221 245566778999999999999998875321 22222 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 473 YGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888899999999998877655
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.30 E-value=1.2e+02 Score=30.27 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=31.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 439 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 439 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
-+...|...|++.+|.+++..+.+...-..+ .++|..-+.+|...|++.++...+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455566666666666666666543211111 133444555666666666666665444
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.91 E-value=33 Score=28.09 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005268 110 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 172 (705)
Q Consensus 110 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 172 (705)
.-+..+-++.+...++.|++....+.|++|.+.+|+..|.++++-+...- .+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33456666677777888999999999999999999999999998776542 333445655543
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.69 E-value=1.4e+02 Score=29.81 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCCcch-----HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 005268 373 CLVDMYGKCGRIDDAMSLFYQVP----RSSSVP-----WNAIISCHGIHGQGDKALNFFRQMLDE--GVRPDHITFVSL- 440 (705)
Q Consensus 373 ~li~~y~k~g~~~~A~~~~~~~~----~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 440 (705)
.|+..|...|++.+|..++.++. ..|..+ +-.-+..|...++..++...+.+.... .+.|++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56777777888888877666554 222222 444556677777888877777766542 232333322111
Q ss_pred ---HHHHh-ccCcHHHHHHHHHHhHHhh
Q 005268 441 ---LTACS-HSGLVSEGQRYFHMMQEEF 464 (705)
Q Consensus 441 ---l~a~~-~~g~~~~a~~~~~~m~~~~ 464 (705)
...+. ..+++..|...|-+..+.+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 11344 6777888877776655433
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.40 E-value=93 Score=27.39 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=6.8
Q ss_pred chhHHHHHHHHHHhcCC
Q 005268 367 DVFVATCLVDMYGKCGR 383 (705)
Q Consensus 367 ~~~~~~~li~~y~k~g~ 383 (705)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333334444444443
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.11 E-value=10 Score=35.48 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 005268 478 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 535 (705)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (705)
..+.+.|.+++|++....- +.+| |...-..|+..++..|+++.|..-++...+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4466889999998877554 3344 56677788899999999999999999999999954
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.37 E-value=1.2e+02 Score=27.95 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=24.7
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHh
Q 005268 344 SHVGALRQGIKIHARVIKNCLCFDVF--VATCLVDMYGKCGRIDDAMSLFY 392 (705)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~k~g~~~~A~~~~~ 392 (705)
+..+......++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33444444455666666666554432 11223344445566666666655
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.40 E-value=1.3e+02 Score=29.54 Aligned_cols=242 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChhHHHHHhccCCCCC--cchHHHHHHHHHhCCChhH--HHHHHHHHHHCCCCCChhhHHhHHHHhhc
Q 005268 66 AASLLHMYCRFGLANVARKLFDDMPVRD--SGSWNAMISGYCQSGNAVE--ALDILDEMRLEGVSMDPITVASILPVCAR 141 (705)
Q Consensus 66 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (705)
...+|.=|...|+.++|...++++..|. ...-..+|..-...++.+. +-.++..+. .++-+.......+...+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q ss_pred CCC--------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhccCC--CCeehHHHHHHHHHcCCCh
Q 005268 142 SDN--------ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDP 211 (705)
Q Consensus 142 ~~~--------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~ 211 (705)
..+ .+..-.++..++..++-|-.++....... .-..+.++++.... .....+..+-+.+...|..
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCHHHHHHHHhc
Q 005268 212 ITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 291 (705)
Q Consensus 212 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 291 (705)
....++-+++ +.++.-|...|+.++|.+.+++
T Consensus 211 ~~veelkkki------------------------------------------------~~lL~EY~~s~D~~EA~~ci~E 242 (358)
T 3eiq_C 211 QPVNHLVKEI------------------------------------------------DMLLKEYLLSGDISEAEHCLKE 242 (358)
T ss_dssp SCHHHHHHHH------------------------------------------------HHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHH------------------------------------------------HHHHHHhccCCCHHHHHHHHHH
Q ss_pred CCCC---ChhHHHHHHHHHHHcC--ChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchH----HHHHHHHHHHHh
Q 005268 292 LPVK---DVISWNTLITGYAQNG--LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR----QGIKIHARVIKN 362 (705)
Q Consensus 292 ~~~~---~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~----~a~~~~~~~~~~ 362 (705)
+..| ..+....+..++-+.+ ..+...+++..+.. .|+-+.......+...+....++. .|..++..++..
T Consensus 243 L~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~-~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 243 LEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.50 E-value=1.2e+02 Score=26.44 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhh
Q 005268 61 WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140 (705)
Q Consensus 61 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 140 (705)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444555555444444444444444444444444455555543 33333333432 244444444555555
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 005268 141 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 179 (705)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 179 (705)
..++.+....+. .++ -.++..+-...+.++.+.++
T Consensus 102 ~~~~~~~~~~L~-~~l---~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 102 QIGDERAVEPLI-KAL---KDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHCCGGGHHHHH-HHT---TCSSHHHHHHHHHHHHHHTC
T ss_pred HhCcHHHHHHHH-HHH---cCCCHHHHHHHHHHHHHhCC
Confidence 444432221221 111 13444444444555554444
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.70 E-value=49 Score=33.66 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005268 370 VATCLVDMYGKCGRIDDAMSLFYQVPRS------SSVPWNAIISCHGIHGQGDKALNFFRQML 426 (705)
Q Consensus 370 ~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (705)
+...+.+.|.++|++++|.+.|.++... -+..|-..|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666666666666666666655411 11124555555556666666666665554
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.57 E-value=1.3e+02 Score=26.64 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=68.6
Q ss_pred HHHHHHHhCC-CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchhhhhhhhhhhcCCcchHHHHHHH
Q 005268 488 MAHNFIQNMP-VRPDA---SIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRSL 561 (705)
Q Consensus 488 ~A~~~~~~~~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 561 (705)
.+...|...+ .+.|. ..|-..+..| ..++...+..+|..|.. +.-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444442 34453 3565555544 23446688889988876 4455677788999999999999999999999
Q ss_pred HHhCCCccCCceeEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHhCCcc
Q 005268 562 ARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 615 (705)
Q Consensus 562 m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 615 (705)
-++++-.|. ..+.....+....|.+.+++
T Consensus 141 GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCRPY-------------------------NRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCCC
Confidence 888765431 34444556677778877763
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.10 E-value=2.2e+02 Score=28.51 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHcCCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHhHHHHhhcCCCh
Q 005268 71 HMYCRFGLANVARKLFDDMPVRDS---GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNI 145 (705)
Q Consensus 71 ~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~ 145 (705)
..-++.|+++-...+++.-..++. ...+ .+...++.|+.+-+.-++ +.|..++.. .-.+.+...+..|+.
T Consensus 19 ~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 334455666666666554332221 1122 233334455544333333 333333221 111223333344554
Q ss_pred HHHHHHHHHHHHhCCCCchh--HHHHHHHHHHccCCHHHHHHHHhcc
Q 005268 146 LSGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQM 190 (705)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m 190 (705)
+ +.+.+++.|..++.. ...+.+...++.|..+....+++.-
T Consensus 94 ~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 94 N----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp H----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred H----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 4 333344445443321 1122334445566766666666543
No 282
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=46.73 E-value=6.1 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=11.2
Q ss_pred CCccccc-cccccCCCCC
Q 005268 688 SNRFHHF-KDGICSCGDY 704 (705)
Q Consensus 688 ~~~~h~~-~~g~~s~~~~ 704 (705)
|-.-|.. ++|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3333443 6899999976
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.47 E-value=1.2e+02 Score=26.28 Aligned_cols=150 Identities=8% Similarity=0.062 Sum_probs=69.8
Q ss_pred HHcCCChhHHHHHhccCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--HHhHHHHhhcCCChH
Q 005268 73 YCRFGLANVARKLFDDMP-V---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT--VASILPVCARSDNIL 146 (705)
Q Consensus 73 y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 146 (705)
.+..|+.+....+++.-. . +|..-++.|.. .++.|+. ++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 355677777777776544 2 23333444433 3445554 34444455565554322 122233334456655
Q ss_pred HHHHHHHHHHHhCCCCchh--HHHHHHHHHHccCCHHHHHHHHhcc-CC---CCeehHHHHHHHHHcCCChhhHHHHHHH
Q 005268 147 SGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQM-ME---RDVVSWNSIIAAYEQSNDPITAHGFFTT 220 (705)
Q Consensus 147 ~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 220 (705)
-.+.+++. .+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.++.+.
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 44443322 22222111 1112234455667777766666554 22 2333344444443322223333566666
Q ss_pred HHHCCCCCCh
Q 005268 221 MQQAGIQPDL 230 (705)
Q Consensus 221 m~~~g~~p~~ 230 (705)
+.+.|..++.
T Consensus 164 Ll~~ga~~~~ 173 (201)
T 3hra_A 164 LMENGADQSI 173 (201)
T ss_dssp HHHTTCCTTC
T ss_pred HHHCCCCCCc
Confidence 6666766653
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.57 E-value=62 Score=32.89 Aligned_cols=95 Identities=12% Similarity=-0.044 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--ChhhHHhHHHHhhcCCChHHHHHHHHHHHHhCC-CCchhHHHHH--
Q 005268 96 SWNAMISGYCQSGNAVEALDILDEMRLEGVSM--DPITVASILPVCARSDNILSGLLIHLYIVKHGL-EFNLFVSNNL-- 170 (705)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~L-- 170 (705)
++..+..-|.+.|++++|.+.|.++......+ -...+-.+++.+...+++..+......+...-. .++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45666777777777777777777776543222 234566666777777777777777766644311 1222222111
Q ss_pred --HHHHHccCCHHHHHHHHhcc
Q 005268 171 --INMYAKFGMMRHALRVFDQM 190 (705)
Q Consensus 171 --i~~y~~~g~~~~A~~~f~~m 190 (705)
.-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 11123457777777766544
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.48 E-value=1.6e+02 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhccCCCCe-ehHHH-------HHHHHHcCCChhhHHHHHHHHHHC
Q 005268 164 LFVSNNLINMYAKFGMMRHALRVFDQMMERDV-VSWNS-------IIAAYEQSNDPITAHGFFTTMQQA 224 (705)
Q Consensus 164 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 224 (705)
..++|.|+..|...+.++.|..+.....-|.. .+.+- +...+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46688888999999999999999988865532 22222 335566788999999888887654
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.74 E-value=1e+02 Score=27.31 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHH
Q 005268 349 LRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 409 (705)
Q Consensus 349 ~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 409 (705)
......+|..|...|+-. -...|......+...|++++|.++|+.-.+....+..-|...|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 446667777777666543 3445666777777777777777777766666666655554433
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.89 E-value=1e+02 Score=25.03 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC---eehHHHHHHHHHcCCC--hhhHHHHHHHHHHCCCCCChh
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDLL 231 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 231 (705)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3557777888888888888888887652 2233444555555432 356777777777766554433
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.24 E-value=2e+02 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=12.0
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCC
Q 005268 206 EQSNDPITAHGFFTTMQQAGIQPD 229 (705)
Q Consensus 206 ~~~g~~~~A~~~~~~m~~~g~~p~ 229 (705)
++.|+.+-...+++.+.+.|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 445555555555554444444443
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.95 E-value=1.6e+02 Score=26.28 Aligned_cols=84 Identities=10% Similarity=0.032 Sum_probs=37.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhh--HHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHccC
Q 005268 103 GYCQSGNAVEALDILDEMRLEGVSMDPIT--VASILPVCARSDNILSGLLIHLYIVKHGLEFNLFV--SNNLINMYAKFG 178 (705)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g 178 (705)
..++.|+.+-...+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34455666655555555555554443221 112233333444443 3334444554433211 122333444566
Q ss_pred CHHHHHHHHhcc
Q 005268 179 MMRHALRVFDQM 190 (705)
Q Consensus 179 ~~~~A~~~f~~m 190 (705)
+.+-...+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666666665554
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.21 E-value=1.2e+02 Score=24.59 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSV---PWNAIISCHGIHGQ--GDKALNFFRQMLDEGVRPD 433 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 433 (705)
.+.++.-|...|+.++|.+.++++..+... ...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356777788888999998888888754322 23444445554432 3456677777776664443
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.23 E-value=2.2e+02 Score=24.84 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhh
Q 005268 61 WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 140 (705)
Q Consensus 61 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 140 (705)
+|..+-...+..+++.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444455555555544334444444444444444444455554442 23333333332 234444444444444
Q ss_pred cCCC
Q 005268 141 RSDN 144 (705)
Q Consensus 141 ~~~~ 144 (705)
..++
T Consensus 107 ~~~~ 110 (211)
T 3ltm_A 107 QIGD 110 (211)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.10 E-value=1.4e+02 Score=27.83 Aligned_cols=91 Identities=9% Similarity=0.068 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcch
Q 005268 475 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 554 (705)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (705)
+.+...+..|+.+-+..+++.-....+...-.+.+......|+.+....+++.-...+..+..-.......-...|+.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344555567777766666665432223212233344445677777777776665444432322222211122234443
Q ss_pred HHHHHHHHHhCCCcc
Q 005268 555 VDEVRSLARDRGLKK 569 (705)
Q Consensus 555 a~~~~~~m~~~~~~~ 569 (705)
++.+.+.+.|...
T Consensus 209 --~~v~~Ll~~gad~ 221 (285)
T 3kea_A 209 --EMLQALFKYDINI 221 (285)
T ss_dssp --HHHHHHTTSCBCS
T ss_pred --HHHHHHHHcCCCC
Confidence 4455556666543
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.91 E-value=1.5e+02 Score=24.80 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHH
Q 005268 352 GIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 403 (705)
Q Consensus 352 a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~ 403 (705)
...+|..|...|+-. -...|......+...|++++|.++|+.-.+.+..+..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 444444444444332 2233444444444455555555555444433433333
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.92 E-value=2.8e+02 Score=25.18 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 005268 273 VDMYAKLGIINSACAVFEG 291 (705)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~ 291 (705)
+...++.|+++....+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334455555555555543
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.85 E-value=74 Score=26.74 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=33.4
Q ss_pred HHHHHhccCCCCCc-----chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005268 81 VARKLFDDMPVRDS-----GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 128 (705)
Q Consensus 81 ~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 128 (705)
++..+|..|..... .-|..-...+-..|++.+|.++|+.-++.+.+|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36677766654433 3366667777778888888888888887777764
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.72 E-value=1.9e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhh
Q 005268 486 LGMAHNFIQNMPVRPDAS--IWG-----ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 543 (705)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~--~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (705)
++.|+.+++.+...-|.. .-. ..+..|.+.|.+++|.+++++.++..|.+...-..|.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 567788888875333311 122 2345799999999999999999988776544333333
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.36 E-value=1.4e+02 Score=27.30 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=19.7
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 467 KPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 467 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
.++.......+..+.|.|+-++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 33444555666778888888888887744
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.06 E-value=1.1e+02 Score=28.02 Aligned_cols=89 Identities=4% Similarity=-0.061 Sum_probs=43.4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhh-------HHhHHHHhh--cCCChHHHHHHHHHHHHhC---------CCCch
Q 005268 103 GYCQSGNAVEALDILDEMRLEGVSMDPIT-------VASILPVCA--RSDNILSGLLIHLYIVKHG---------LEFNL 164 (705)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~ 164 (705)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-++.+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34556777776666666666555555332 233333332 4566666655555433211 00000
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhccC
Q 005268 165 FVSNNLINMYAKFGMMRHALRVFDQMM 191 (705)
Q Consensus 165 ~~~~~Li~~y~~~g~~~~A~~~f~~m~ 191 (705)
....+.+...+..|+.+-+..+++.-.
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 011223344455677776666666443
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.83 E-value=1.6e+02 Score=26.72 Aligned_cols=53 Identities=6% Similarity=-0.032 Sum_probs=28.5
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCCCChhh-------HHHHHHHHH--ccCChhhHHHHHHHH
Q 005268 204 AYEQSNDPITAHGFFTTMQQAGIQPDLLT-------LVSLTSIVA--QLNDCRNSRSVHGFI 256 (705)
Q Consensus 204 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~a~~i~~~~ 256 (705)
..++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+..+.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 33556777776667776666666555332 233333332 456666555555443
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.18 E-value=1.4e+02 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchhhhhhhhhhhcCCcchHHHHHHHHHhCC
Q 005268 492 FIQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 566 (705)
Q Consensus 492 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 566 (705)
+|...+++|. ..++++-++...+++|+.-|..+.++++++.|+.. ..++|+++.....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3444456665 34677788889999999999999999999987421 2355777777776554
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.04 E-value=2.9e+02 Score=24.36 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=34.1
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 005268 404 AIISCHG---IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449 (705)
Q Consensus 404 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 449 (705)
-+|+++. +..+++.|+-.+-+|++.| .|..+.=..++.|...-|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3555554 4679999999999999999 7777766677767766664
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.94 E-value=3.3e+02 Score=25.00 Aligned_cols=239 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC----hhHHHHHHHhhhhcCCCCCCcccccc
Q 005268 263 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL----ASEAIEVFQMMEECNEINPNQGTYVS 338 (705)
Q Consensus 263 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~p~~~t~~~ 338 (705)
.++..+...-+..+.+.|..+....+.+.+..++...-...+.++.+.|. ....+.++..+.. -.++...-..
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~---~d~~~~vr~~ 110 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL---NDKSACVRAT 110 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH---HCSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHh---cCCCHHHHHH
Q ss_pred hhHHhhccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcC-Ch
Q 005268 339 ILPAYSHVG--ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHG-QG 415 (705)
Q Consensus 339 ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 415 (705)
.+.++...+ +......+...+.+.--.++..+-...+.++++.|+.+....+.+.+..++...-...+.++...| +.
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005268 416 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 495 (705)
Q Consensus 416 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (705)
..+...+.++.. .++...-...+.++...|..+....+...+. .|+ .-...+.++++.|..+-.-.+.+.
T Consensus 191 ~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-----d~~--vr~~a~~aL~~i~~~~~~~~L~~~ 260 (280)
T 1oyz_A 191 SDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-----KNT--VYDDIIEAAGELGDKTLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-----SSS--CCHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-----Ccc--HHHHHHHHHHhcCchhhhHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 005268 496 MPVRPDASIWGALLGACRI 514 (705)
Q Consensus 496 ~~~~p~~~~~~~ll~~~~~ 514 (705)
+...++.......+.+..+
T Consensus 261 l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 261 LYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HTTSSCCHHHHHHHHHHTC
T ss_pred HhcCCCcHHHHHHHHHhhc
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.38 E-value=2.1e+02 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.9
Q ss_pred HccCCHHHHHHHHh
Q 005268 175 AKFGMMRHALRVFD 188 (705)
Q Consensus 175 ~~~g~~~~A~~~f~ 188 (705)
+..|..+-+..+++
T Consensus 117 ~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 117 AQFGHTSIVAYLIA 130 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHh
Confidence 33444444444443
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.37 E-value=4.3e+02 Score=26.19 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCCCHH--HHHHHHHHHHcCCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005268 49 KIHCSVLKLGFEWDVF--VAASLLHMYCRFGLANVARKLFDDMPVR---DSGSWNAMISGYCQSGNAVEALDILDEMRLE 123 (705)
Q Consensus 49 ~~~~~~~~~g~~~~~~--~~~~ll~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 123 (705)
.+...+++.|..++.. .....+...++.|+.+-+..+++.-... |..-++.| ...++.|+.+- .+.+.+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNM----VKLLLEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHTCHHH----HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHH----HHHHHhC
Confidence 3444455555544322 1122344445567777666666543322 22223333 33345555443 3333334
Q ss_pred CCCCChhh--HHhHHHHhhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHccCCHHHHHHHHhccC
Q 005268 124 GVSMDPIT--VASILPVCARSDNILSGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQMM 191 (705)
Q Consensus 124 g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~ 191 (705)
|..|+... -.+.+...+..|+.+....++ +.+..++.. ...+.+...++.|+.+-+..+++.-.
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 54443221 112333334455555444433 333322211 11123444456677766666665443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.64 E-value=1.2e+02 Score=25.43 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 005268 371 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSV---PWNAIISCHGIHGQ--GDKALNFFRQMLDEGVRP 432 (705)
Q Consensus 371 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 432 (705)
.+.++.-|...|+.++|.+.++++..+... ...++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356777788888888888888888654322 13444445544322 345666777777666444
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.00 E-value=2.1e+02 Score=24.38 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=50.7
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCcchhhhhhhhhhhcCCcchHHHHHH
Q 005268 487 GMAHNFIQNM-PVRPDAS---IWGALLGACRIHGNMELGAVASDRLFEV--DSENVGYYVLMSNIYANVGKWEGVDEVRS 560 (705)
Q Consensus 487 ~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 560 (705)
+.+...|... ..+.|.. +|-.++..| + .+..+|..|... .-.-+..|...+..+...|++.+|.++++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444433 2344543 454444443 3 366778877654 45566778889999999999999999999
Q ss_pred HHHhCCCcc
Q 005268 561 LARDRGLKK 569 (705)
Q Consensus 561 ~m~~~~~~~ 569 (705)
.-++++-.|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Confidence 988876543
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.74 E-value=4e+02 Score=25.33 Aligned_cols=193 Identities=7% Similarity=0.095 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCh--hHHHHHHHHHHHcCCh--hHHHHHHHhhhhcCCCCCCcc--cccchhHH
Q 005268 269 GNAVVDMYAKLGIINSACAVFEGLPVKDV--ISWNTLITGYAQNGLA--SEAIEVFQMMEECNEINPNQG--TYVSILPA 342 (705)
Q Consensus 269 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~p~~~--t~~~ll~a 342 (705)
...++.-|...|+.++|...++++..+.- ..-..+|..-...++. +.+-.++..+.. .-+.++.. .|..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999886641 2222333333333322 334556666653 22322221 13333333
Q ss_pred hhccC-chHHHHHHH----HHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHh------hCC----CCCc-ch---
Q 005268 343 YSHVG-ALRQGIKIH----ARVIKNCLCFDVFVATCLVDMYGKCG--RIDDAMSLFY------QVP----RSSS-VP--- 401 (705)
Q Consensus 343 ~~~~~-~~~~a~~~~----~~~~~~g~~~~~~~~~~li~~y~k~g--~~~~A~~~~~------~~~----~~~~-~~--- 401 (705)
+.... +...|..++ .+++..++-|-..+....-..-...| -+..|..++. .+. ..+. .+
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 32221 222333333 33333333222211111000000000 1233333331 111 0111 11
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHhHHh
Q 005268 402 ----WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL--VSEGQRYFHMMQEE 463 (705)
Q Consensus 402 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~ 463 (705)
.+.++.-|...|+.++|.+.++++..-...| .+....+..+..+.+. .+....++..+.+.
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 5677888888899999998888875211111 2344445555555432 45566777766654
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.51 E-value=1.2e+02 Score=25.45 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC---eehHHHHHHHHHcCCC--hhhHHHHHHHHHHCCCCCCh
Q 005268 167 SNNLINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDL 230 (705)
Q Consensus 167 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 230 (705)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3557777878888888888888887652 2233444455554322 34567777777766654443
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.32 E-value=3.2e+02 Score=24.01 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=67.5
Q ss_pred HHHHcCCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCChhhHHhHHHHhhcC
Q 005268 71 HMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG----VSMDPITVASILPVCARS 142 (705)
Q Consensus 71 ~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~ 142 (705)
...++.|+.+....+++.-. .+|..-++.|. ..+..|+.+-+..+++.-.... ...|..-.+.+ ...+..
T Consensus 8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~~ 85 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVIN 85 (232)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHHc
Confidence 34456677777777766521 22333334433 3345566554444444321100 00111222333 333344
Q ss_pred CChHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHccCCHHHHHHHHhccCCC---CeehHHHHHHH
Q 005268 143 DNILSGLLIHLYIVKHGLEFNLF---------------VSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAA 204 (705)
Q Consensus 143 ~~~~~a~~~~~~~~~~g~~~~~~---------------~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~ 204 (705)
|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++. +..
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~ 160 (232)
T 2rfa_A 86 QNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-LHI 160 (232)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHH
T ss_pred CCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHH
Confidence 5544 334444555544432 1223344445556666665555543222 2222222 233
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCC
Q 005268 205 YEQSNDPITAHGFFTTMQQAGIQP 228 (705)
Q Consensus 205 ~~~~g~~~~A~~~~~~m~~~g~~p 228 (705)
.+..|+.+-+..+++.+.+.|..+
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHcCChHHHHHHHHHHHhcCCch
Confidence 345566666656666666665433
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.76 E-value=2.2e+02 Score=24.36 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=64.7
Q ss_pred hhcCCchHHHHHHHHHhHhCCCCCC---ccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHH--HHHHHHHHHcCCChh
Q 005268 6 VRCGRLSEAVDCFYQFTLTSGLRPD---FYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFV--AASLLHMYCRFGLAN 80 (705)
Q Consensus 6 ~~~g~~~~A~~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~ 80 (705)
+..|+.+....++.. .+..++ ..-.+.+..++.. + -.++...+++.|..++... ....+...+..|+.+
T Consensus 13 ~~~g~~~~v~~ll~~----~~~~~~~~~~~g~t~L~~A~~~-~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 13 ANQRDTKKVKEILQD----TTYQVDEVDTEGNTPLNIAVHN-N-DIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHTTCHHHHHHHHTC----TTCCTTCCCTTSCCHHHHHHHH-T-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHc----CCCCCCCCCCCCCCHHHHHHHc-C-CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 456666655554433 222332 2223344444322 1 1345556666665544221 122333445667777
Q ss_pred HHHHHhccCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC---ChhhHHhHHHHhhcCCChHHHHHHH
Q 005268 81 VARKLFDDMP----VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSM---DPITVASILPVCARSDNILSGLLIH 152 (705)
Q Consensus 81 ~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~~~ 152 (705)
-+..+++.-. .+|..-++.+ ...++.|+.+-+..+++ .| ..+ |..-.+.+..++........-.++.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 7777774332 1222222222 23345555543333332 23 222 2233344444443332233334566
Q ss_pred HHHHHhCCCCc
Q 005268 153 LYIVKHGLEFN 163 (705)
Q Consensus 153 ~~~~~~g~~~~ 163 (705)
+.+++.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66666665554
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.08 E-value=2e+02 Score=26.19 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=17.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 005268 100 MISGYCQSGNAVEALDILDEMRL 122 (705)
Q Consensus 100 li~~~~~~g~~~~A~~~~~~m~~ 122 (705)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677778888888888877653
No 312
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.00 E-value=2.8e+02 Score=23.78 Aligned_cols=30 Identities=20% Similarity=-0.031 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005268 350 RQGIKIHARVIKNCLCFDVFVATCLVDMYG 379 (705)
Q Consensus 350 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 379 (705)
+....++..+.+.|+-.|.....+.+....
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~ 79 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMM 79 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345556666666676666555555554443
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.98 E-value=3e+02 Score=24.27 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHHHHCCCCCChhhHHhHHHHhhcCCC-----hHHHHHHHHHHHHhCC
Q 005268 97 WNAMISGYC---QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN-----ILSGLLIHLYIVKHGL 160 (705)
Q Consensus 97 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 160 (705)
.--+|+++. +..+++.|+-.+-+|++.| .|.-..-..++-+.-.-|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344566664 4578888888888888888 5544444444444433332 2334444444455554
No 314
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=25.48 E-value=13 Score=19.59 Aligned_cols=14 Identities=43% Similarity=1.424 Sum_probs=9.5
Q ss_pred cccccccc--CCCCCC
Q 005268 692 HHFKDGIC--SCGDYW 705 (705)
Q Consensus 692 h~~~~g~~--s~~~~w 705 (705)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36777877 566665
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.59 E-value=2.9e+02 Score=25.63 Aligned_cols=16 Identities=0% Similarity=-0.089 Sum_probs=7.0
Q ss_pred HHccCCHHHHHHHHhc
Q 005268 174 YAKFGMMRHALRVFDQ 189 (705)
Q Consensus 174 y~~~g~~~~A~~~f~~ 189 (705)
.+..|..+-+..+++.
T Consensus 136 A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 136 AVMLNDVSIVSYFLSE 151 (285)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3344444444444433
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.52 E-value=2.7e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005268 402 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP 432 (705)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 432 (705)
|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4444444455555555555555555555555
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.26 E-value=67 Score=24.54 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=31.2
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHH
Q 005268 77 GLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALD 115 (705)
Q Consensus 77 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 115 (705)
.+.+.|+++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999999888899999999877776654433
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.25 E-value=1.8e+02 Score=30.22 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCC-c-----ch-HHHHHHHHHhcCCHHHHHHHHHhC
Q 005268 435 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-L-----KH-YGCMVDLFGRAGHLGMAHNFIQNM 496 (705)
Q Consensus 435 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-----~~-~~~li~~~~~~g~~~~A~~~~~~~ 496 (705)
..++.++..|.+.+.+++|..+..... ++.. . .. +-.++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456666777777777777777776542 1111 1 11 122345556667777777666554
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.60 E-value=2.1e+02 Score=27.77 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=21.1
Q ss_pred HHHHcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 005268 71 HMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 119 (705)
Q Consensus 71 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 119 (705)
...++.|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 3334455555555555544333221111222333445555544444444
No 320
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.49 E-value=29 Score=21.50 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=8.6
Q ss_pred ccccccchhH
Q 005268 661 NLRVCGDCHN 670 (705)
Q Consensus 661 n~~~~~~~h~ 670 (705)
+-|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 6799999984
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.29 E-value=6.2e+02 Score=28.67 Aligned_cols=127 Identities=11% Similarity=0.008 Sum_probs=76.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCChhHHHHHHHhhhhcCCCCCCcccccchhHHhhccCchHH
Q 005268 272 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 351 (705)
Q Consensus 272 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 351 (705)
++..+...|..+-|.++..-++. +..+--.+..+|...|++++|...|++.. .|+.++.......- .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~----------~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLR----------E 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGH----------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchh----------h
Confidence 66777788999988887766664 44433456778899999999999999875 45544433222111 1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh----hCCCCCcc----hHHHHHHHHHhcC
Q 005268 352 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY----QVPRSSSV----PWNAIISCHGIHG 413 (705)
Q Consensus 352 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~----~~~~~~~~----~~~~li~~~~~~g 413 (705)
...++.... .......-|.-++..+-+.+.++.+.++-+ .+...|.. .|+.++.+.+..|
T Consensus 883 ~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111000 001122367778888888888887765543 33333333 2777777766544
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.26 E-value=3.1e+02 Score=24.07 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 005268 405 IISCHG---IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 448 (705)
Q Consensus 405 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 448 (705)
+|+++. +..+++.|+-.+-+|++.|-.|..+.=..++.|...-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455553 46789999999999999998887776666666655544
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.12 E-value=93 Score=23.70 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHH
Q 005268 382 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 419 (705)
Q Consensus 382 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 419 (705)
...+.|.++++.++.++...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888999888888888888888887767655443
No 324
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.36 E-value=4.3e+02 Score=23.44 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=35.5
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 005268 402 WNAIISCHG---IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL 449 (705)
Q Consensus 402 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 449 (705)
..-+|+++- +..+++.|+-.+-+|++.|-.|..+.=..++.|...-|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 334556654 467999999999999999988877766666666655553
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.40 E-value=2.2e+02 Score=23.38 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCcCCcchHHHHHHHHHhcCCHH
Q 005268 423 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 487 (705)
Q Consensus 423 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 487 (705)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..+..--++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777766533 2333333444555677777777654 44445555556667888888754
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.09 E-value=1.2e+02 Score=27.25 Aligned_cols=93 Identities=9% Similarity=0.070 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHhCCCCCCccchHHHHHHhcCCchHHHHHHHHHHhCCCCCHHH-HHHHHHHHHcCCChhHHHHHhccC
Q 005268 11 LSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFV-AASLLHMYCRFGLANVARKLFDDM 89 (705)
Q Consensus 11 ~~~A~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ll~~y~~~g~~~~A~~~f~~~ 89 (705)
++.+++.|.. ....+-|..-+..=|.-.....+...+|..|...|+...... |......+-..|++.+|..+|+.-
T Consensus 100 LErc~~~F~~---~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVR---NPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTT---CGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcc---cccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred CCCCcchHHHHHHHHHh
Q 005268 90 PVRDSGSWNAMISGYCQ 106 (705)
Q Consensus 90 ~~~~~~~~~~li~~~~~ 106 (705)
.+.++.....|...|..
T Consensus 177 i~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 177 KRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp HHHTCBSHHHHHHHHHH
T ss_pred HHcCCccHHHHHHHHHH
No 327
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.07 E-value=34 Score=27.97 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCceEEee----ccccccchhHHHHHHhhhhCceEEEecCCccccccccccC
Q 005268 653 KSPIQIFK----NLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 700 (705)
Q Consensus 653 ~~~~~~~~----n~~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s 700 (705)
...+||+. +.++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 55677774 57777776 444454555789999999999874
Done!