BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005270
(705 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G +VV ++++G DVN A +G T LH AA G +EVVKLLL+A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 57
Query: 137 SADVNSVDAYGNRPADLIAKNCNL 160
ADVN+ D G P L A+N +L
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHL 81
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G +VV ++++G DVN A +G T LH AA G +EVVKLLL+A
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 90
Query: 137 SADVNSVDAYGNRPADLIAKNCNL 160
ADVN+ D G P L A+N +L
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHL 114
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 110 DGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNL 160
+G T LH AA G +EVVKLLL+A ADVN+ D G P L A+N +L
Sbjct: 1 NGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G +VV ++++G DVN A +G T LH AA G +EVVKLLL+A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 123
Query: 137 SA 138
A
Sbjct: 124 GA 125
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G +VV ++++G DVN A +G T LH AA G +EVVKLLL+A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 57
Query: 137 SADVNSVDAYGNRPADLIAKNCNL 160
ADVN+ D G P L A+N +L
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHL 81
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 110 DGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNL 160
+G T LH AA G +EVVKLLL+A ADVN+ D G P L A+N +L
Sbjct: 1 NGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G +VV ++++G DVN A +G T LH AA G +EVVKLLL+A
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 90
Query: 137 SA 138
A
Sbjct: 91 GA 92
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 11/101 (10%)
Query: 74 FEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
F TPL +A+ FG ++V ++K+G DVN A S GVT LH AA G +E+V++L
Sbjct: 45 FTGWTPLHLAAHFGHLEIVEVLLKNG-ADVN-AKDSLGVTPLHLAARRGH---LEIVEVL 99
Query: 134 LDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
L ADVN+ D++G P L AK +L ++++ LLK
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHL------EIVEVLLK 134
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A S G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNG-ADVN-ASDSHGFTPLHLAAKRGH---LEIVEVLLKNG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAG 124
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G P DL N N
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGN 146
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAG 91
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
ADVN+ D G P L A+ +L ++++ LLK
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 123
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A DG T LH AA G +E+V++LL A AD
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAGAD 60
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
VN+ D G P L A+ +L ++++ LLK
Sbjct: 61 VNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 90
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A +DG T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHG-ADVN-ARDTDGWTPLHLAADNGH---LEIVEVLLKYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ DAYG P L A +L ++++ LLK
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHL------EIVEVLLK 134
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A + G+T LH AA G +E+V++LL
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYG-ADVN-AQDAYGLTPLHLAADRGH---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL A+ G K+VV +I G DVN A SDG T LH AA G EVVKLL+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKG-ADVN-AKDSDGRTPLHHAAENGHK---EVVKLLISK 125
Query: 137 SADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D+ G P DL ++ N
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGN 148
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL A+ G K+VV +I G DVN A SDG T LH AA G EVVKLL+
Sbjct: 38 RTPLHHAAENGHKEVVKLLISKG-ADVN-AKDSDGRTPLHHAAENGHK---EVVKLLISK 92
Query: 137 SADVNSVDAYGNRPADLIAKN 157
ADVN+ D+ G P A+N
Sbjct: 93 GADVNAKDSDGRTPLHHAAEN 113
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G+KD V +I++G DVN A SDG T LH AA G EVVKLL+ AD
Sbjct: 8 LIEAAENGNKDRVKDLIENG-ADVN-ASDSDGRTPLHHAAENGHK---EVVKLLISKGAD 62
Query: 140 VNSVDAYGNRPADLIAKN 157
VN+ D+ G P A+N
Sbjct: 63 VNAKDSDGRTPLHHAAEN 80
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL A+ G K++V +I G DVN A SDG T LH AA G E+VKLL+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKG-ADVN-AKDSDGRTPLHYAAKEGHK---EIVKLLISK 125
Query: 137 SADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D+ G P DL ++ N
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGN 148
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL A+ G K++V +I G DVN A SDG T LH AA G E+VKLL+
Sbjct: 38 RTPLHYAAKEGHKEIVKLLISKG-ADVN-AKDSDGRTPLHYAAKEGHK---EIVKLLISK 92
Query: 137 SADVNSVDAYGNRPADLIAK 156
ADVN+ D+ G P AK
Sbjct: 93 GADVNAKDSDGRTPLHYAAK 112
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G+KD V +I++G DVN A SDG T LH AA G E+VKLL+ AD
Sbjct: 8 LIEAAENGNKDRVKDLIENG-ADVN-ASDSDGRTPLHYAAKEGHK---EIVKLLISKGAD 62
Query: 140 VNSVDAYGNRPADLIAK 156
VN+ D+ G P AK
Sbjct: 63 VNAKDSDGRTPLHYAAK 79
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAG 124
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
ADVN+ D +G P DL + G +VLQ
Sbjct: 125 ADVNAQDKFGKTPFDLAIRE---GHEDIAEVLQ 154
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 91
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
ADVN+ D G P L A+ +L ++++ LLK
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 123
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A DG T LH AA G +E+V++LL A AD
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAGAD 60
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
VN+ D G P L A+ +L ++++ LLK
Sbjct: 61 VNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 90
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+M G ++V ++K+G DVN A G+ G T LH AA A+ +E+V++LL
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNG-ADVN-ATGNTGRTPLHLAAW---ADHLEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ +G ++V ++K+G DVN A SDG+T LH AA G +E+V++LL
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNG-ADVN-AMDSDGMTPLHLAAKWGY---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DV+ A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHG-ADVD-ASDVFGYTPLHLAAYWGH---LEIVEVLLKNG 103
Query: 138 ADVNSVDAYGNRPADLIAK 156
ADVN++D+ G P L AK
Sbjct: 104 ADVNAMDSDGMTPLHLAAK 122
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A + G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-AADNTGTTPLHLAAYSG---HLEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
V++ D +G P L A
Sbjct: 73 VDASDVFGYTPLHLAA 88
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ FG ++V ++K+G DVN A +G+T LH AA+ G +E+V++LL
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNG-ADVN-AKDDNGITPLHLAANRGH---LEIVEVLLKYG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISINNGN 158
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ +G ++V ++K+G DVN A + G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNG-ADVN-AYDTLGSTPLHLAAHFGH---LEIVEVLLKNG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G P L A +L ++++ LLK
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHL------EIVEVLLK 134
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGRDDEVRILMANG-ADVN-AADVVGWTPLHLAAYWGH---LEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D G+ P L A +L ++++ LLK
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHL------EIVEVLLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 71 KMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVV 130
KMG TPL +A+++G ++V ++K+G DVN A + G T LH AA G +E+V
Sbjct: 78 KMG---DTPLHLAALYGHLEIVEVLLKNG-ADVN-ATDTYGFTPLHLAADAGH---LEIV 129
Query: 131 KLLLDASADVNSVDAYGNRPADLIAKNCN 159
++LL ADVN+ D +G D+ N N
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
+TPL +A++ G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHG-ADVN-AADKMGDTPLHLAALYGH---LEIVEVLLKN 102
Query: 137 SADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D YG P L A +L ++++ LLK
Sbjct: 103 GADVNATDTYGFTPLHLAADAGHL------EIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL +A+ G ++V ++++G DVN A ++G T LH AAS G +E+V++LL
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNG-ADVN-AVDTNGTTPLHLAASLGH---LEIVEVLLKY 90
Query: 137 SADVNSVDAYGNRPADLIA 155
ADVN+ DA G P L A
Sbjct: 91 GADVNAKDATGITPLYLAA 109
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A + G+T L+ AA G +E+V++LL
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYG-ADVN-AKDATGITPLYLAAYWGH---LEIVEVLLKHG 124
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
ADVN+ D +G D+ + ++G ++LQ
Sbjct: 125 ADVNAQDKFGKTAFDI---SIDIGNEDLAEILQ 154
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G D N A G T LH AA+ G +E+V++LL AD
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADAN-AYDHYGRTPLHMAAAVGH---LEIVEVLLRNGAD 60
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+VD G P L A +L ++++ LLK
Sbjct: 61 VNAVDTNGTTPLHLAASLGHL------EIVEVLLK 89
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ FG ++V ++K+G DVN A S GVT LH AA G +EVV++LL
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNG-ADVN-ADDSLGVTPLHLAADRG---HLEVVEVLLKNG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G P L A N+G ++++ LLK
Sbjct: 104 ADVNANDHNGFTPLHLAA---NIG---HLEIVEVLLK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G +VV ++K+G DVN A +G T LH AA+ G +E+V++LL
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNG-ADVN-ANDHNGFTPLHLAANIGH---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ASDHVGWTPLHLAAYFGH---LEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D+ G P L A +L +V++ LLK
Sbjct: 73 VNADDSLGVTPLHLAADRGHL------EVVEVLLK 101
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
ADVN+ D G P L A+ +L ++++ LLK
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 135
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A DG T LH AA G +E+V++LL A
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A DG T LH AA G +E+V++LL A AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
VN+ D G P L A+ +L ++++ LLK
Sbjct: 73 VNAKDKDGYTPLHLAAREGHL------EIVEVLLKA 102
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ +G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIXGSTPLHLAALIGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIA 155
ADVN+VD +G+ P L A
Sbjct: 104 ADVNAVDTWGDTPLHLAA 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A++ G ++V ++K G DVN A + G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIMGH---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A + G+T LH AA+ G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ATDASGLTPLHLAATYG---HLEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN++D G+ P L A
Sbjct: 73 VNAIDIXGSTPLHLAA 88
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A++FG ++V ++K+G DVN A +G T LH AA G +E+V++LL
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNG-ADVN-ANDMEGHTPLHLAAMFGH---LEIVEVLLKNG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A G+T L AA G +E+V++LL
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNG-ADVN-AVDHAGMTPLRLAALFG---HLEIVEVLLKNG 103
Query: 138 ADVNSVDAYGNRPADLIA 155
ADVN+ D G+ P L A
Sbjct: 104 ADVNANDMEGHTPLHLAA 121
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A + G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGRDDEVRILMANG-ADVN-AEDASGWTPLHLAAFNGH---LEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN+VD G P L A
Sbjct: 73 VNAVDHAGMTPLRLAA 88
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
E TPL +A+MFG ++V ++K+G DVN A G TA + G+ + E+++ L
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNG-ADVN-AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A G+T LH AA+ G +E+V++LL
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNG-ADVN-ASDLTGITPLHLAAATGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G+ P L AK +L ++++ LLK
Sbjct: 104 ADVNAYDNDGHTPLHLAAKYGHL------EIVEVLLK 134
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A +DG T LH AA G +E+V++LL
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHG-ADVN-AYDNDGHTPLHLAAKYGH---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A +DG T LH AAS G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ATDNDGYTPLHLAASNG---HLEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D G P L A +L ++++ LLK
Sbjct: 73 VNASDLTGITPLHLAAATGHL------EIVEVLLK 101
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ +G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIMGSTPLHLAALIGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIA 155
ADVN+VD +G+ P L A
Sbjct: 104 ADVNAVDTWGDTPLHLAA 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A++ G ++V ++K G DVN A + G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIMGH---LEIVEVLLKHG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A + G+T LH AA+ G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ATDASGLTPLHLAATYG---HLEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN++D G+ P L A
Sbjct: 73 VNAIDIMGSTPLHLAA 88
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
+TPL +A+ G K+VV ++ G D N A SDG T LH AA G EVVKLLL
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQG-ADPN-AKDSDGKTPLHLAAENGHK---EVVKLLLSQ 92
Query: 137 SADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALL 173
AD N+ D+ G P L A+ N K+V++ LL
Sbjct: 93 GADPNAKDSDGKTPLHLAAE------NGHKEVVKLLL 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
+TPL +A+ G K+VV ++ G D N A SDG T LH AA G EVVKLLL
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQG-ADPN-AKDSDGKTPLHLAAENGHK---EVVKLLLSQ 125
Query: 137 SADVNSVDAYGNRPADLIAKNCN 159
AD N+ D+ G P DL ++ N
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGN 148
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G+KD V ++++G DVN A SDG T LH AA G EVVKLLL AD
Sbjct: 8 LIEAAENGNKDRVKDLLENG-ADVN-ASDSDGKTPLHLAAENGHK---EVVKLLLSQGAD 62
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALL 173
N+ D+ G P L A+ N K+V++ LL
Sbjct: 63 PNAKDSDGKTPLHLAAE------NGHKEVVKLLL 90
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A S G+T LH AA G +E+V++LL
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNG-ADVN-ASDSAGITPLHLAAYDGH---LEIVEVLLKHG 95
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G P L A + L ++++ LLK
Sbjct: 96 ADVNAYDRAGWTPLHLAALSGQL------EIVEVLLK 126
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A +G+T LH AA+ G +E+V++LL AD
Sbjct: 10 LLEAAAAGQDDEVRILMANG-ADVN-ATDDNGLTPLHLAAANGQ---LEIVEVLLKNGAD 64
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D+ G P L A + +L ++++ LLK
Sbjct: 65 VNASDSAGITPLHLAAYDGHL------EIVEVLLK 93
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHG-ADVN-AYDRAGWTPLHLAALSGQ---LEIVEVLLKHG 128
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
ADVN+ DA G D+ + N G ++LQ
Sbjct: 129 ADVNAQDALGLTAFDI---SINQGQEDLAEILQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPL A+ G K++V ++ G D N A SDG T LH AA G E+VKLLL
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKG-ADPN-AKDSDGRTPLHYAAENGHK---EIVKLLLSK 125
Query: 137 SADVNSVDAYGNRPADLIAKNCN 159
AD N+ D+ G P DL ++ N
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGN 148
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G+KD V ++++G D N A SDG T LH AA G E+VKLLL AD
Sbjct: 8 LIEAAENGNKDRVKDLLENG-ADPN-ASDSDGRTPLHYAAENGHK---EIVKLLLSKGAD 62
Query: 140 VNSVDAYGNRPADLIAKN 157
N+ D+ G P A+N
Sbjct: 63 PNAKDSDGRTPLHYAAEN 80
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+M G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYG-ADVN-AFDMTGSTPLHLAADEGH---LEIVEVLLKYG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A++ G ++V ++K G DV+ A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHG-ADVD-AADVYGFTPLHLAAMTGH---LEIVEVLLKYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G+ P L A +L ++++ LLK
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHL------EIVEVLLK 134
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V +I +G DVN A + G+T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILIANG-ADVN-AVDNTGLTPLHLAAVSGH---LEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
V++ D YG P L A +L ++++ LLK
Sbjct: 73 VDAADVYGFTPLHLAAMTGHL------EIVEVLLK 101
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNG-ADVN-ALDFSGSTPLHLAAKRGH---LEIVEVLLKYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G+ P L A +L ++++ LLK
Sbjct: 104 ADVNADDTIGSTPLHLAADTGHL------EIVEVLLK 134
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 72 MGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVK 131
+ F TPL +A+ G ++V ++K G DVN A + G T LH AA G +E+V+
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYG-ADVN-ADDTIGSTPLHLAADTGH---LEIVE 130
Query: 132 LLLDASADVNSVDAYGNRPADLIAKNCN 159
+LL ADVN+ D +G D+ N N
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A + G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-AEDTYGDTPLHLAARVGH---LEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN++D G+ P L AK +L ++++ LLK
Sbjct: 73 VNALDFSGSTPLHLAAKRGHL------EIVEVLLK 101
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A S G T LH AA+ G +E+V++LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN-ASDSWGRTPLHLAATVGH---LEIVEVLLEYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A GVT LH AA G +E+V++LL AD
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN-AMDDAGVTPLHLAAKRGH---LEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN+ D++G P L A
Sbjct: 73 VNASDSWGRTPLHLAA 88
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A + G+T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYG-ADVN-AEDNFGITPLHLAAIRGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A DG+T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ALDEDGLTPLHLAAQLG---HLEIVEVLLKYGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D +G P L A +L ++++ LLK
Sbjct: 73 VNAEDNFGITPLHLAAIRGHL------EIVEVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ + ++V ++K G DVN A +DG T LH AA G +E+V++LL
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHG-ADVN-AHDNDGSTPLHLAALFGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYG-ADVN-AMDYQGYTPLHLAAEDGH---LEIVEVLLKYG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL + G +++ ++K DVN A G T LH AA G +E+V++LL
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYA-ADVN-ASDKSGWTPLHLAAYRGH---LEIVEVLLKYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN++D G P L A++ +L ++++ LLK
Sbjct: 104 ADVNAMDYQGYTPLHLAAEDGHL------EIVEVLLK 134
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 64 GRIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGS 123
G + GS+ + TPL A+ G + V ++ G DVN A DG T LH AA G
Sbjct: 1 GHMWGSK----DGNTPLHNAAKNGHAEEVKKLLSKG-ADVN-ARSKDGNTPLHLAAKNGH 54
Query: 124 ANSVEVVKLLLDASADVNSVDAYGNRPADLIAKN 157
A E+VKLLL ADVN+ GN P L KN
Sbjct: 55 A---EIVKLLLAKGADVNARSKDGNTPEHLAKKN 85
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A + G T LH AA G +E+V++LL
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYG-ADVN-AWDNYGATPLHLAADNGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
ADVN+ D G P L A + +L ++++ LLK
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHL------EIVEVLLK 134
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A +G T LH AA G +E+V++LL
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHG-ADVN-AKDYEGFTPLHLAAYDGH---LEIVEVLLKYG 136
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A G T LH AA G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-ATDWLGHTPLHLAAKTGH---LEIVEVLLKYGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN+ D YG P L A N +L ++++ LLK
Sbjct: 73 VNAWDNYGATPLHLAADNGHL------EIVEVLLK 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSD--GVTALHCAASGGSANSVEVVKLLLD 135
TPL +A+ G ++V ++K G DVN SD G T LH AA+ G +E+V++LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN---ASDIWGRTPLHLAATVGH---LEIVEVLLE 101
Query: 136 ASADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGN 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A GVT LH AA G +E+V++LL AD
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN-AMDDAGVTPLHLAAKRG---HLEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN+ D +G P L A
Sbjct: 73 VNASDIWGRTPLHLAA 88
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K+G DVN A + G T LH AA G +E+ ++LL
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNG-ADVN-AVDAIGFTPLHLAAFIG---HLEIAEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGN 125
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A G+T L+ A + G +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-AKDEYGLTPLYLATAHGH---LEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN+VDA G P L A
Sbjct: 73 VNAVDAIGFTPLHLAA 88
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 72 MGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVK 131
MG + L+ A+ G D V ++ +G DV A +G T LH AA G +EVVK
Sbjct: 2 MGSDLGKKLLEAARAGQDDEVRILMANG-ADV-AAKDKNGSTPLHLAARNGH---LEVVK 56
Query: 132 LLLDASADVNSVDAYGNRPADLIAKNCN 159
LLL+A ADVN+ D +G D+ N N
Sbjct: 57 LLLEAGADVNAQDKFGKTAFDISIDNGN 84
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G ++V ++K G DVN A G T LH AA+ G +E+V++LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN-ARDIWGRTPLHLAATVGH---LEIVEVLLEYG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A GVT LH AA G +E+V++LL AD
Sbjct: 18 LLEATRAGQDDEVRILMANG-ADVN-AMDDAGVTPLHLAAKRG---HLEIVEVLLKHGAD 72
Query: 140 VNSVDAYGNRPADLIA 155
VN+ D +G P L A
Sbjct: 73 VNARDIWGRTPLHLAA 88
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+M ++V ++K+G DVN A + G T LH A G +E+V++LL
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNG-ADVN-AIDAIGETPLHLVAMYGH---LEIVEVLLKHG 103
Query: 138 ADVNSVDAYGNRPADLIAKNCN 159
ADVN+ D +G D+ N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A G+T LH AA + +E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVN-AEDKVGLTPLHLAAMN---DHLEIVEVLLKNGAD 72
Query: 140 VNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLK 174
VN++DA G P L+A +L ++++ LLK
Sbjct: 73 VNAIDAIGETPLHLVAMYGHL------EIVEVLLK 101
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ A+ G D V ++ +G DVN A DG T LH AA G +E+V++LL A AD
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADVN-AKDKDGYTPLHLAAREGH---LEIVEVLLKAGAD 60
Query: 140 VNSVDAYGNRPADLIAKNCN 159
VN+ D +G D+ N N
Sbjct: 61 VNAQDKFGKTAFDISIDNGN 80
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 72 MGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVK 131
MG + L+ A+ G D V ++ +G DV A +G T LH AA G +EVVK
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANG-ADV-AAKDKNGSTPLHLAARNGH---LEVVK 74
Query: 132 LLLDASADVNSVDAYGNRPADLIAKNCN 159
LLL+A ADV + D +G D+ N N
Sbjct: 75 LLLEAGADVXAQDKFGKTAFDISIDNGN 102
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A+ G +V Y++++ VN A D T LHCAA G N +VKLLL+ +
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNK-AKVN-AKAKDDQTPLHCAARIGHTN---MVKLLLENN 103
Query: 138 ADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCV 181
A+ N G+ P + A+ ++ + VL L K + C+
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHV-----ETVLALLEKEASQACM 142
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 18/157 (11%)
Query: 23 QDGLCYNFSILLELTASDDL---DGFR--KAIEEDGH-DIDESGLWYGRII-GSRKMGFE 75
Q+G ++LL A+ +L G + ++GH + + + +G ++ + +MG+
Sbjct: 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY- 312
Query: 76 ERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLD 135
TPL +AS +G+ +V ++++ DVN A G + LH AA G ++V LLL
Sbjct: 313 --TPLHVASHYGNIKLVKFLLQH-QADVN-AKTKLGYSPLHQAAQQG---HTDIVTLLLK 365
Query: 136 ASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQAL 172
A N V + G P IAK LG+ S VL+ +
Sbjct: 366 NGASPNEVSSDGTTPLA-IAK--RLGYISVTDVLKVV 399
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 71 KMGFEERTPLMIASMFGSKDVVSYVI-KSGHVDVNRACGSDGVTALHCAASGGSANSVEV 129
K GF TPL +A+ +G V ++ + H + A G +G+T LH A N++++
Sbjct: 144 KKGF---TPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHH---NNLDI 194
Query: 130 VKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGTGCVEEIDNLC 188
VKLLL +S G P + AK ++ +V ++LL+ G+ E + +
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAK------QNQVEVARSLLQYGGSANAESVQGVT 247
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL IA+ +V +++ G A GVT LH AA G A E+V LLL
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYG--GSANAESVQGVTPLHLAAQEGHA---EMVALLLSKQ 268
Query: 138 ADVNSVDAYGNRPADLIAK 156
A+ N + G P L+A+
Sbjct: 269 ANGNLGNKSGLTPLHLVAQ 287
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
T L A G ++V ++++ G V+VN A SDG T LHCAA S N+V+V K L+++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFG-VNVN-AADSDGWTPLHCAA---SCNNVQVCKFLVESG 126
Query: 138 ADV 140
A V
Sbjct: 127 AAV 129
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 65 RIIGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSA 124
RI ++ F L+ +S+ G D+V +I VD +G+TALH A G
Sbjct: 26 RIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHT 83
Query: 125 NSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCN 159
E+VK L+ +VN+ D+ G P A +CN
Sbjct: 84 ---EIVKFLVQFGVNVNAADSDGWTPLH-CAASCN 114
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
T L A G ++V ++++ G V+VN A SDG T LHCAA S N+V+V K L+++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFG-VNVN-AADSDGWTPLHCAA---SCNNVQVCKFLVESG 126
Query: 138 ADV 140
A V
Sbjct: 127 AAV 129
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
L+ +S+ G D+V +I VD +G+TALH A G E+VK L+ +
Sbjct: 41 LLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHT---EIVKFLVQFGVN 95
Query: 140 VNSVDAYGNRPADLIAKNCN 159
VN+ D+ G P A +CN
Sbjct: 96 VNAADSDGWTPLH-CAASCN 114
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
E TPLM A+ G VV +++++G G + +L C S ++VK+LL
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLL 89
Query: 135 DASADVNSVDAYGNRP 150
D DVN D G P
Sbjct: 90 DCGVDVNEYDWNGGTP 105
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
E TPLM A+ G VV +++++G G + +L C S ++VK+LL
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLL 87
Query: 135 DASADVNSVDAYGNRP 150
D DVN D G P
Sbjct: 88 DCGVDVNEYDWNGGTP 103
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 70 RKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEV 129
+ + T L +AS+ G +V ++ G DVN +G TALH A + ++
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVD---LQNPDL 166
Query: 130 VKLLLDASADVNSVDAYGNRPADL 153
V LLL ADVN V G P L
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQL 190
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 46 RKAIEEDGH---------DIDESGLWYGRIIGSRKMGFEER----TPLMIASMFGSKDVV 92
R+A ED H D+D L + G + F+E TPL A +D+V
Sbjct: 19 RRAAVEDNHLLIKAVQNEDVD---LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 75
Query: 93 SYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYG 147
+++ G V R +G T AA GS V+++KL L ADVN D YG
Sbjct: 76 ELLLRHGADPVLRK--KNGATPFILAAIAGS---VKLLKLFLSKGADVNECDFYG 125
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTAL-HCAASGGSANSVEVVKLLLDA 136
T LM A+ G +V+ ++ DVN AC + G AL H S ++ + LLLD
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 137 SADVNSVDAYGNRPADLIAKNCNLGFNSR 165
ADVN G P L + +LG R
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQR 257
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 76 ERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLD 135
+RTPL +A+ G ++V ++K G DVN A +TALH A N EVV+LL+
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHG-ADVN-AKDMLKMTALHWATE---HNHQEVVELLIK 121
Query: 136 ASADVNSVDAYGNRPADLIAKNCN 159
ADV++ + D+ N N
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGN 145
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSD-GVTALHCAASGGSANSVEVVKLLLDA 136
+PL +A+ +G ++++G V+R + T LH AAS G AN VEV LL
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAG---VSRDARTKVDRTPLHMAASEGHANIVEV---LLKH 89
Query: 137 SADVNSVD 144
ADVN+ D
Sbjct: 90 GADVNAKD 97
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A + V +++SG DVN+ G D + LH A S E+ LL+D
Sbjct: 136 TPLYLACENQQRACVKKLLESG-ADVNQGKGQD--SPLHAVARTASE---ELACLLMDFG 189
Query: 138 ADVNSVDAYGNRPADLI 154
AD + +A G RP +L+
Sbjct: 190 ADTQAKNAEGKRPVELV 206
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
+PL +A++ G D++ ++K G R +D LH A G +VVK LLD++
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQGH---FQVVKCLLDSN 142
Query: 138 ADVNSVDAYGNRP 150
A N D GN P
Sbjct: 143 AKPNKKDLSGNTP 155
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
E TPLM A+ G VV +++++G G + +L C S ++VK+LL
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLL 105
Query: 135 DASADVNSVDAYGNRP 150
D DVN D G P
Sbjct: 106 DCGVDVNEYDWNGGTP 121
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGH-VDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
++RTPLM A+ + V Y+IK+G VD A +G T LH AA G EVV+ L
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA---EGSTCLHLAAKKG---HYEVVQYL 96
Query: 134 L-DASADVNSVDAYGNRP 150
L + DVN D G P
Sbjct: 97 LSNGQMDVNCQDDGGWTP 114
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 43/129 (33%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDG----------------------- 111
E T L +A+ G +VV Y++ +G +DVN C DG
Sbjct: 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVN--CQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 112 -----------VTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAK---- 156
LH AA G V++ ++LL A D+++V+ +G+ P + A+
Sbjct: 134 GSDINIRDNEENICLHWAAFSG---CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190
Query: 157 NCNLGFNSR 165
+C + F SR
Sbjct: 191 DCVVLFLSR 199
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTAL-HCAASGGSANSVEVVKLLLDA 136
T LM A+ G +V+ ++ DVN AC + G AL H S ++ + LLLD
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 137 SADVNSVDAYGNRPADLIAKNCNLGFNSR 165
ADVN G P L + +LG R
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQR 237
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 68 GSRKMGFEER----TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGS 123
G + F+E TPL A +D+V +++ G V R +G T AA GS
Sbjct: 27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK--KNGATPFLLAAIAGS 84
Query: 124 ANSVEVVKLLLDASADVNSVDAYG 147
V+++KL L ADVN D YG
Sbjct: 85 ---VKLLKLFLSKGADVNECDFYG 105
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL A G VV +++ H + G + LH AA G V++VKLLL
Sbjct: 45 TPLHEACNHGHLKVVELLLQ--HKALVNTTGYQNDSPLHDAAKNGH---VDIVKLLLSYG 99
Query: 138 ADVNSVDAYGNRPAD 152
A N+V+ +G RP D
Sbjct: 100 ASRNAVNIFGLRPVD 114
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
T L IAS+ G V Y++++G D N G T LH A + G ++VV+LLL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGS-DPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHK 66
Query: 138 ADVNSVDAYGNRPADLIAKN 157
A VN+ + P AKN
Sbjct: 67 ALVNTTGYQNDSPLHDAAKN 86
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 70 RKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEV 129
+ + T L +AS+ G +V ++ G DVN +G TALH A + ++
Sbjct: 108 KATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVD---LQNPDL 163
Query: 130 VKLLLDASADVNSVDAYGNRPADL 153
V LLL ADVN V G P L
Sbjct: 164 VSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
+ RT L A G ++V ++++ G V VN G + LH AAS G E+VK LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-DDAGWSPLHIAASAGRD---EIVKALL 93
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
A VN+V+ G P A +R ++ LL+G
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEG 128
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 96 IKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRP 150
+ SGH++ R S G TALH AA+ G EV+KLL+ A DVN D G P
Sbjct: 185 LNSGHINDVRHAKSGG-TALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTP 235
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
+ RT L A G ++V ++++ G V VN G + LH AAS G E+VK LL
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-DDAGWSPLHIAASAGRD---EIVKALL 94
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
A VN+V+ G P A +R ++ LL+G
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEG 129
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDAS 137
TPL +A + V +++SG DVN+ G D + LH S E+ LL+D
Sbjct: 192 TPLYLACENQQRACVKKLLESG-ADVNQGKGQD--SPLHAVVRTASE---ELACLLMDFG 245
Query: 138 ADVNSVDAYGNRPADLI 154
AD + +A G RP +L+
Sbjct: 246 ADTQAKNAEGKRPVELV 262
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 78 TPLMIASMFGSKDVVSYVIKSG-HVDV-NRACGSDGVTALHCAASGGSANSVEVVKLLLD 135
+PL A G VV +I G ++V NR G D T LH AAS G ++V+ LL
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNR--GDD--TPLHLAASHGHR---DIVQKLLQ 93
Query: 136 ASADVNSVDAYGNRP 150
AD+N+V+ +GN P
Sbjct: 94 YKADINAVNEHGNVP 108
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
+ RT L A G ++V ++++ G V VN G + LH AAS G E+VK LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-DDAGWSPLHIAASAGXD---EIVKALL 93
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
A VN+V+ G P A +R ++ LL+G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEG 128
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
+ RT L A G ++V ++++ G V VN G + LH AAS G E+VK LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-DDAGWSPLHIAASAGRD---EIVKALL 93
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKG 175
A VN+V+ G P A +R ++ LL+G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEG 128
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 78 TPLMIASMFGSKDVVSYVIKSG-HVDV-NRACGSDGVTALHCAASGGSANSVEVVKLLLD 135
+PL A G VV +I G ++V NR G D T LH AAS G ++V+ LL
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNR--GDD--TPLHLAASHGHR---DIVQKLLQ 88
Query: 136 ASADVNSVDAYGNRP 150
AD+N+V+ +GN P
Sbjct: 89 YKADINAVNEHGNVP 103
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 69 SRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVE 128
+R+ L+ A++ G +VV +K ++ +G+TALH A G +
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGA---NYS 68
Query: 129 VVKLLLDASADVNSVDAYGNRPADLIAKNCN 159
+V L+ A A+VNS D++G P A +CN
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLH-CAASCN 98
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 279 CVPCPEFRKGSCRQGDACEYAHGIFE---CWLHPAQYRTRLCK 318
C P E G+C+ G+ C++AHG E HP +Y+T LC+
Sbjct: 9 CRPFEE--SGTCKYGEKCQFAHGFHELRSLTRHP-KYKTELCR 48
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 282 CPEFRKGSCRQGDA-CEYAHGIFECWLHPAQYRTRLCKD--ETNCNRRVCFFAHKPEELR 338
C EF++G+C +G+ C +AH + + +C D + C R C + H P L+
Sbjct: 23 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 82
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 78 TPLMIASMFGSKDVVSYVIKSG---HVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
TPL+ AS FG + V ++++ G H+ + +AL A++GG ++V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHI-----LAKERESALSLASTGG---YTDIVGLLL 89
Query: 135 DASADVNSVDAYGNRP 150
+ D+N D G P
Sbjct: 90 ERDVDINIYDWNGGTP 105
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
E + L +AS G D+V +++ VD+N +G T L A G N V+ V+ LL
Sbjct: 68 ERESALSLASTGGYTDIVGLLLER-DVDIN-IYDWNGGTPLLYAVHG---NHVKCVEALL 122
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
AD+ + G P DL LG+ ++V++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVA---LGYRKVQQVIE 155
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 78 TPLMIASMFGSKDVVSYVIKSG---HVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
TPL+ AS FG + V ++++ G H+ + +AL A++GG ++V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHI-----LAKERESALSLASTGG---YTDIVGLLL 89
Query: 135 DASADVNSVDAYGNRP 150
+ D+N D G P
Sbjct: 90 ERDVDINIYDWNGGTP 105
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 75 EERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
E + L +AS G D+V +++ VD+N +G T L A G N V+ V+ LL
Sbjct: 68 ERESALSLASTGGYTDIVGLLLER-DVDIN-IYDWNGGTPLLYAVRG---NHVKCVEALL 122
Query: 135 DASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
AD+ + G P DL LG+ ++V++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVA---LGYRKVQQVIE 155
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 79 PLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASA 138
PL A +G +V ++K G V VN A T LH AA+ G E+ KLLL A
Sbjct: 78 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 132
Query: 139 DVNSVDAYGNRPADLI 154
D + GN P DL+
Sbjct: 133 DPTKKNRDGNTPLDLV 148
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 67 IGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANS 126
+ R + + TPL A+ + VV Y+++ G DV+ A G+ LH A S G
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVH-AKDKGGLVPLHNACSYG---H 87
Query: 127 VEVVKLLLDASADVNSVDAYGNRP 150
EV +LL+ A VN D + P
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTP 111
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 79 PLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASA 138
PL A +G +V ++K G V VN A T LH AA+ G E+ KLLL A
Sbjct: 82 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 136
Query: 139 DVNSVDAYGNRPADLI 154
D + GN P DL+
Sbjct: 137 DPTKKNRDGNTPLDLV 152
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 67 IGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANS 126
+ R + + TPL A+ + VV Y+++ G DV+ A G+ LH A S G
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVH-AKDKGGLVPLHNACSYG---H 91
Query: 127 VEVVKLLLDASADVNSVDAYGNRP 150
EV +LL+ A VN D + P
Sbjct: 92 YEVAELLVKHGAVVNVADLWKFTP 115
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 288 GSCRQGDACEYAHGIFECWL---HPAQYRTRLC---KDETNCNR-RVCFFAHKPEE 336
G CR G C++AHG+ E HP +Y+T LC K + C C F H P E
Sbjct: 22 GRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 79 PLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASA 138
PL A +G +V ++K G V VN A T LH AA+ G E+ KLLL A
Sbjct: 80 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 134
Query: 139 DVNSVDAYGNRPADLI 154
D + GN P DL+
Sbjct: 135 DPTKKNRDGNTPLDLV 150
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 67 IGSRKMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANS 126
+ R + + TPL A+ + VV Y+++ G DV+ A G+ LH A S G
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVH-AKDKGGLVPLHNACSYG---H 89
Query: 127 VEVVKLLLDASADVNSVDAYGNRP 150
EV +LL+ A VN D + P
Sbjct: 90 YEVAELLVKHGAVVNVADLWKFTP 113
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 74 FEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
F +TPLM + +FG ++ ++++ G +VN +G T L A+ G + E+VK L
Sbjct: 99 FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDR-NLEGETPLIVASKYGRS---EIVKKL 153
Query: 134 LDASADVNSVDAYG 147
L+ AD+++ D G
Sbjct: 154 LELGADISARDLTG 167
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RTPLM+A M G ++ + ++++ D +G TAL A N + + + LL
Sbjct: 36 RTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKN---NRLGIAEKLLSK 90
Query: 137 SADVNSVDAYGNRP 150
++VN+ D G P
Sbjct: 91 GSNVNTKDFSGKTP 104
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 276 HYSCVPCPEFRKGSCRQGDACEYAHG 301
H S PCP F +G CR + C ++HG
Sbjct: 73 HKSLKPCPFFLEGKCRFKENCRFSHG 98
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 74 FEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
++ TPL +A + ++V + +G D+N+ + G T LH A A + V++LL
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAV---EAQAASVLELL 211
Query: 134 LDASADVNSVDAYGNR 149
L A AD + YG R
Sbjct: 212 LKAGAD-PTARMYGGR 226
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 74 FEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
++ TPL +A + ++V + +G D+N+ + G T LH A A + V++LL
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAV---EAQAASVLELL 211
Query: 134 LDASADVNSVDAYGNR 149
L A AD + YG R
Sbjct: 212 LKAGAD-PTARMYGGR 226
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 282 CPEFRKGSCRQGDA-CEYAHGIFECWLHPAQYRTRLCKD--ETNCNRRVCFFAHKPEELR 338
C E+++G+C +G+ C +AH + +C D + C+R C + H P L+
Sbjct: 9 CREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQ 68
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 17/86 (19%)
Query: 78 TPLMIASMFG-------------SKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSA 124
TPLMIAS G + V+S I G ++ G TALH AA+ +
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGATALHLAAAYSRS 70
Query: 125 NSVEVVKLLLDASADVNSVDAYGNRP 150
++ K LL+ASAD N D G P
Sbjct: 71 DAA---KRLLEASADANIQDNMGRTP 93
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 71 KMGFEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVV 130
+ E R+P + ++ S G +D+ A DG+TALH A + E V
Sbjct: 84 HLACEHRSPTCLRALLDSA-------APGTLDLE-ARNYDGLTALHVAVN---TECQETV 132
Query: 131 KLLLDASADVNSVDAYGNR 149
+LLL+ AD+++VD R
Sbjct: 133 QLLLERGADIDAVDIKSGR 151
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 111 GVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
G +H AA G ++++ LL+ ADVN D GN P L AK +L +V++
Sbjct: 70 GFAVIHDAARAGQLDTLQT---LLEFQADVNIEDNEGNLPLHLAAKEGHL------RVVE 120
Query: 171 ALLKGSGT 178
L+K + +
Sbjct: 121 FLVKHTAS 128
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 78 TPLMIASMFG-------------SKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSA 124
TPLMIAS G + V+S I G ++ G TALH AA +
Sbjct: 13 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRS 71
Query: 125 NSVEVVKLLLDASADVNSVDAYGNRP 150
++ K LL+ASAD N D G P
Sbjct: 72 DAA---KRLLEASADANIQDNMGRTP 94
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 78 TPLMIASMFG-------------SKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSA 124
TPLMIAS G + V+S I G ++ G TALH AA +
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRS 70
Query: 125 NSVEVVKLLLDASADVNSVDAYGNRP 150
++ K LL+ASAD N D G P
Sbjct: 71 DAA---KRLLEASADANIQDNMGRTP 93
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 282 CPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKDETNC-NRRVCFFAHKP--EELR 338
C + G C + + C Y HG F C +L NC N C F+H P EE R
Sbjct: 16 CKFYITGFCARAENCPYMHGDFPC---------KLYHTTGNCINGDDCMFSHDPLTEETR 66
Query: 339 PL 340
L
Sbjct: 67 EL 68
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 78 TPLMIASMFGSKDVVSYVIKSGHVDVNRACGSD----GVTALHCAASGGSANSVEVVKLL 133
PL A +G +V ++K G AC + T LH AAS N VEV LL
Sbjct: 93 VPLHNACSYGHYEVTELLLKHG------ACVNAMDLWQFTPLHEAAS---KNRVEVCSLL 143
Query: 134 LDASADVNSVDAYGNRPADL 153
L AD V+ +G D+
Sbjct: 144 LSHGADPTLVNCHGKSAVDM 163
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 103 VNRAC-GSDG--VTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCN 159
+N C SDG T LH AA N V +V+LLL ADV++ D G P + C+
Sbjct: 47 LNVNCHASDGRKSTPLHLAAG---YNRVRIVQLLLQHGADVHAKDKGGLVP---LHNACS 100
Query: 160 LGFNSRKKVLQALLKGSGTGCVEEID 185
G +V + LLK CV +D
Sbjct: 101 YG---HYEVTELLLKHG--ACVNAMD 121
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 74 FEERTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLL 133
++ RT L A+ + +V Y++ + ++ DG T + AA G +EVV L
Sbjct: 277 YKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQ-DEDGKTPIXLAAQEGR---IEVVXYL 332
Query: 134 LDASADVNSVDA 145
+ A V +VDA
Sbjct: 333 IQQGASVEAVDA 344
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 111 GVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
G +H AA G ++++ LL+ ADVN D GN P L AK +L +V++
Sbjct: 70 GFAVIHDAARAGFLDTLQT---LLENQADVNIEDNEGNLPLHLAAKEGHL------RVVE 120
Query: 171 ALLKGSGT 178
L+K + +
Sbjct: 121 FLVKHTAS 128
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 80 LMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDASAD 139
+ +A+ FG +V+Y+I G DV+ +G+T L AA +SV+ +LLL +
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQ-DVD-MMDQNGMTPLMWAAY--RTHSVDPTRLLLTFNVS 168
Query: 140 VNSVDAYGNRPA 151
VN D Y A
Sbjct: 169 VNLGDKYHKNTA 180
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 111 GVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
G +H AA G ++++ LL+ ADVN D GN P L AK +L +V++
Sbjct: 70 GFAVIHDAARAGFLDTLQT---LLEFQADVNIEDNEGNLPLHLAAKEGHL------RVVE 120
Query: 171 ALLKGSGT 178
L+K + +
Sbjct: 121 FLVKHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 111 GVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQ 170
G +H AA G ++++ LL+ ADVN D GN P L AK +L +V++
Sbjct: 70 GFAVIHDAARAGFLDTLQT---LLEFQADVNIEDNEGNLPLHLAAKEGHL------RVVE 120
Query: 171 ALLKGSGT 178
L+K + +
Sbjct: 121 FLVKHTAS 128
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 106 ACGSDGVTALHCAASGGSANSVEVVKLLLDASADVNSVDAYGNRPADLI 154
A GS + A+ + VE V+ LL+A A+ N+ ++YG RP ++
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 280 VPCPEFRKGSCRQGDACEYAH-----GIFECWLHPAQYRTRLCKDETNCNRRVCFFAH-K 333
V C + +G C++GD CE+ H + EC+ + C+ + C F H
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFY---------SKFGECSNKECPFLHID 67
Query: 334 PE 335
PE
Sbjct: 68 PE 69
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 78 TPLMIASM--FGSKDVVSYVIKSGHV-DVNRACGSDGVTALHCAASGGSANSVEVVKLLL 134
+P+M+ ++ ++D + V++ + ++N G TAL A S G V+VVK LL
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGR---VDVVKALL 203
Query: 135 DASADVNSVDAYGN 148
ADVN D G+
Sbjct: 204 ACEADVNVQDDDGS 217
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 77 RTPLMIASMFGSKDVVSYVIKSGHVDVNRACGSDGVTALHCAASGGSANSVEVVKLLLDA 136
RT L + + + +++ + D+ G+ +H AA G ++++ LL+
Sbjct: 39 RTALQVMKLGNPEIARRLLLRGANPDLKDRTGN---AVIHDAARAGFLDTLQT---LLEF 92
Query: 137 SADVNSVDAYGNRPADLIAKNCNLGFNSRKKVLQALLKGSGT 178
ADVN D GN P L AK +L +V++ L+K + +
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHL------RVVEFLVKHTAS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,491,396
Number of Sequences: 62578
Number of extensions: 845246
Number of successful extensions: 2015
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 195
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)