BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005273
(704 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 301 bits (771), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 214/607 (35%), Positives = 314/607 (51%), Gaps = 81/607 (13%)
Query: 78 RLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVASMLPAEAFTVVRKSFDARKVLKE 137
R++++ +P+ + G ALLD ITK L P ++ +F V R+ +DARK
Sbjct: 13 RINEIKLPLDHEEG--------ALLDAITKKLGIPAEKVI---SFNVFRRGYDARKKTN- 60
Query: 138 PKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINIIHDCKKVSDD 197
+YT+D+ V GD ++ K ++D
Sbjct: 61 IHLIYTLDIIVE--------------------------------GDETALL---AKFAND 85
Query: 198 TLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
+R+ + + P + V+G GP GLFA LVLA+ G + ++ERG+ V +R
Sbjct: 86 PHVRQTPDXEYKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQXGFNPIIVERGKEVRER 145
Query: 258 GRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPAN 317
+D +R L ESN FGEGGAGT+SDGKL +++ + V+ V GAP
Sbjct: 146 TKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEE 205
Query: 318 ILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377
IL K H+GT +L+ + R + LG I+F TRVDDL E+ +I GV +S+
Sbjct: 206 ILYVSKPHIGTFKLVTXIEKXRATIIELGGEIRFSTRVDDLHXEDGQITGVTLSNG---- 261
Query: 378 QSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEHPQELINSIQYSEL 437
+++ V+LAVGHSARD +E L + K F+VG R+EH Q I+ ++
Sbjct: 262 ----EEIKSRHVVLAVGHSARDTFEXLHERGVYXEAKPFSVGFRIEHKQSXIDEARFGPN 317
Query: 438 ATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTNPLE 497
A G + ADYK+ + R+ YSFC CPGG +V ++
Sbjct: 318 A-----GHPILGAADYKLVHHCK------------NGRTVYSFCXCPGGTVVAATSEEGR 360
Query: 498 LCINGMSFSRRSSRWANAALVVTVSAKDFDTLDLHG-PLAGVKFQREFEQRAAIMGGGNF 556
+ NG S R+ R AN+A+VV +S + +D G PLAG++FQRE E A +GG N+
Sbjct: 361 VVTNGXSQYSRAERNANSAIVVGISPE----VDYPGDPLAGIRFQRELESNAYKLGGENY 416
Query: 557 VVPAQKVTDFLENKLSAS--PLPPSSYRLGVKAASLHELFPTHLTDALKHSISMFDEELP 614
PAQK+ DFL+ + + + P S+ G+K L + P +A++ +I FD ++
Sbjct: 417 DAPAQKIGDFLKGRDPSQLGDVEP-SFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIK 475
Query: 615 GFISDTGLLHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAGYAGGIVSAAADGMYA 674
GF S+ GLL GVETRTS P+ I R + +S +LKG YP GEGAGYAGGI+SA DG+
Sbjct: 476 GFASEDGLLTGVETRTSSPVCIKRGKD-FQSVNLKGFYPAGEGAGYAGGILSAGIDGIKV 534
Query: 675 GFAVAKD 681
AVA+D
Sbjct: 535 AEAVARD 541
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+ KVA++GGGP+G A L L +LG DVT+ ER
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 9 VAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREAR 44
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 9 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 44
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 30 VAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREAR 65
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 72 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 163
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
VA++GGGP GL + +L + G DV++ ER E R
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR 64
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 73 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 132
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 133 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 164
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 72 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 163
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 72 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 163
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 72 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 132 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 163
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 121 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 180
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 181 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 212
>pdb|3LMC|A Chain A, Crystal Structure Of Zinc-Dependent Peptidase From
Methanocorpusculum Labreanum (Strain Z), Northeast
Structural Genomics Consortium Target Mur16
Length = 210
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 95 IGVSHALLDEITKVLQFPVA----SMLPAEAFTVVRKSFDARKVL 135
+G+S + +E++ VL+ PV+ + P E F VR +DA KVL
Sbjct: 13 VGLSRPVSEELSAVLEXPVSRIDDGIFPLEGFDPVRNQYDAVKVL 57
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 121 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 180
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 181 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 212
>pdb|1S9R|A Chain A, Crystal Structure Of Arginine Deiminase Covalently Linked
With A Reaction Intermediate
pdb|1S9R|B Chain B, Crystal Structure Of Arginine Deiminase Covalently Linked
With A Reaction Intermediate
Length = 410
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 26/115 (22%)
Query: 70 NNKFEGFWRLSKL----AVPVHKDPGKDFIGVSHALLDEITKVLQFPVASMLPAEAFTVV 125
++KF+G S++ +V VH +PG++ ++ A LDE+ F+ +
Sbjct: 5 DSKFKGIHVYSEIGELESVLVH-EPGREIDYITPARLDELL---------------FSAI 48
Query: 126 RKSFDARKVLKEPKFVYTV---DMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLD 177
+S DARK K+ FV + D++V +L+DL T+D S+ EAK +E L+
Sbjct: 49 LESHDARKEHKQ--FVAELKANDINVVELIDLVAETYDLASQ-EAKDKLIEEFLE 100
>pdb|1LXY|A Chain A, Crystal Structure Of Arginine Deiminase Covalently Linked
With L-Citrulline
pdb|1LXY|B Chain B, Crystal Structure Of Arginine Deiminase Covalently Linked
With L-Citrulline
Length = 409
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 26/115 (22%)
Query: 70 NNKFEGFWRLSKL----AVPVHKDPGKDFIGVSHALLDEITKVLQFPVASMLPAEAFTVV 125
++KF+G S++ +V VH +PG++ ++ A LDE+ F+ +
Sbjct: 4 DSKFKGIHVYSEIGELESVLVH-EPGREIDYITPARLDELL---------------FSAI 47
Query: 126 RKSFDARKVLKEPKFVYTV---DMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLD 177
+S DARK K+ FV + D++V +L+DL T+D S+ EAK +E L+
Sbjct: 48 LESHDARKEHKQ--FVAELKANDINVVELIDLVAETYDLASQ-EAKDKLIEEFLE 99
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEM 272
K +VA++G GPSGL +L + G D ++ER E GR ++ + M+++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDEVLGRIRAGVLEQGMVDL 55
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
K VVG GP GL A++ LA LGA V L+E+
Sbjct: 86 KCLVVGAGPCGLRAAVELALLGARVVLVEK 115
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
K VVG GP GL A++ LA LGA V L+E+
Sbjct: 94 KCLVVGAGPCGLRAAVELALLGARVVLVEK 123
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMES 274
++ V+GGG GL V LGA+VTLIE + +G A ++RR LE E
Sbjct: 171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEG 224
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Query: 195 SDDTLLRKEISSGSE--GLYNY---------PRTRKPKVAVVGGGPSGLFASLVLAELGA 243
+ DT+L + S E GL N+ P + KV ++G G SGL A+ L G
Sbjct: 243 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 302
Query: 244 DVTLIERGQAVEQR---------GRDIGALVV 266
DVTL+E V R D+GA+VV
Sbjct: 303 DVTLLEARDRVGGRVATFRKGNYVADLGAMVV 334
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEM 272
K +VA++G GPSGL +L + G D ++ER GR G ++ + M+++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRGGVLEQGMVDL 55
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
++AVVGG SGL A+L+L + G DV + ER
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYER 36
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 113 VASMLPAEAFTVVRKSFDARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSV 172
+A+ +P AF+ V + L V T ++ ++ D D +SR +A + S+
Sbjct: 259 IATPVPRGAFSWVTRKLKGHVSLP---LVTTNRINDPQVAD------DILSRGDADMVSM 309
Query: 173 E-------HMLDKRASG--DLINIIHDCKKVSDDTLLRKEISS--------GSEGLYNYP 215
+L K SG D IN C + D + +++S + P
Sbjct: 310 ARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILP 369
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
+K +AVVG GP+GL ++ A G VTL +
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFD 403
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 216 RTRKPK-VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR 259
+T PK V VVG G SGL A+ VLA G VT++E + R R
Sbjct: 29 KTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVR 73
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQ 252
VVG GP G A++ A+LG VT++E+G
Sbjct: 8 VVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVR 267
+V VVG GPSGL A+ L G DV L E GRD+G V +
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAE-------AGRDLGGRVTQ 432
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQA 253
V VVGGGPSGL A+L LA G V +++ G++
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR--GRDIGALVVRRMLEMES 274
T ++ +VGGG G + +LG VT++E G + R GR IGA + + E+
Sbjct: 141 TSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGV 200
Query: 275 NFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGA-PANILVDGKSHLGTDR 330
G G G +G+L + + S +A + L+ GA PA+ L ++ L DR
Sbjct: 201 QVELGTGVVGFSGEGQLEQVMASDGRSFVA-DSALICVGAEPADQLAR-QAGLACDR 255
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
K +VA++G GPSGL +L + G D ++ER
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 217 TRKPK-VAVVGGGPSGLFASLVLAELGADVTLIE 249
T PK V +VG G SGL A+ VLA G VT++E
Sbjct: 43 TSNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLE 76
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 207 GSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
G+E LY V V+GGGPSGL A++ AE GA+V L+++G + ++
Sbjct: 14 GTENLYFQSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK 64
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 220 PKVAVVGGGPSGLFASLVLAELG 242
PK+ ++G GP+GL A++ L ELG
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELG 32
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
++G G +GLF + LA+LG VT+ + G+ + GR I
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI---GRKI 43
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 179 RASGDLINIIHDCKKVSDDTLLRKEISSGSEGLYN------------YPRTRKPKVAVVG 226
R + D ++ D V+ + R+ SGS+ +N P R +AV+G
Sbjct: 125 RVTSDSTTVLADTVVVATGAVARRLYFSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIG 184
Query: 227 GGPSGLFASLVLAELGADVTLIER 250
GG S + L + G+ V +I R
Sbjct: 185 GGDSAMEEGNFLTKYGSQVYIIHR 208
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
T + VA+VG GPSGL A+ L + G V +IE
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
T + VA+VG GPSGL A+ L + G V +IE
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
T + VA+VG GPSGL A+ L + G V +IE
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 208 SEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
S G PR K V V+GGG GL V A LGA+VT++E
Sbjct: 164 STGALALPRVPKTMV-VIGGGVIGLELGSVWARLGAEVTVVE 204
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 221 KVAVVGGGPSGLF-ASLVLAELGAD-VTLIER 250
K+A++G GPSGL A +LAE D VTL ER
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFER 39
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 221 KVAVVGGGPSGLF-ASLVLAELGAD-VTLIER 250
K+A++G GPSGL A +LAE D VTL ER
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFER 41
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERG 251
+VG GP G+ A+ L+E G V L+ERG
Sbjct: 12 IVGAGPGGIIAADRLSEAGKKVLLLERG 39
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERG 251
+VG GP G+ A+ L+E G V L+ERG
Sbjct: 7 IVGAGPGGIIAADRLSEAGKKVLLLERG 34
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESN 275
R KVAV+GGG + + +L L+ + ++V LI R + G ++++R+++ N
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR-----RDGFRAEKILIKRLMDKVEN 196
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R KVAV+GGG + + +L L+ + ++V LI R
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R KVAV+GGG + + +L L+ + ++V LI R
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R KVAV+GGG + + +L L+ + ++V LI R
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 217 TRKPK-VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR 259
T PK V VVG G SGL A+ VL+ G VT++E + R R
Sbjct: 30 TSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVR 73
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R KVAV+GGG + + +L L+ + ++V LI R
Sbjct: 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
PRT VAVVGGG SGL + L G D L+E
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR 259
+V +VGGG S L ++ L + A VTL+ RG + G+
Sbjct: 165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
P + +VAV+GGG SG+ A++ LA + VTL+E
Sbjct: 140 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 174
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
P + +VAV+GGG SG+ A++ LA + VTL+E
Sbjct: 351 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 385
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIER 250
V ++GGGP+G A++ A+LG + +E+
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEK 36
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 217 TRKPK-VAVVGGGPSGLFASLVLAELGADVTLIE 249
T PK V +VG G +GL A+ VLA G VT++E
Sbjct: 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAV 254
P K+A++G GP+ + + LA LG +D+T+ E+ + V
Sbjct: 183 PEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 223
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAV 254
P K+A++G GP+ + + LA LG +D+T+ E+ + V
Sbjct: 183 PEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 223
>pdb|2D39|A Chain A, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|B Chain B, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|C Chain C, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
Length = 237
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 643 CESTSLKGLYPVGEGAGYAGGIVSAAADGMYAGFAVAKDFGLFPADIESIL 693
C +++L GLY +G YA GI +AA G + V+ + + PA +E L
Sbjct: 171 CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVS-EMKVRPAFLEQKL 220
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIE 249
V V+GGGP+GL ++ L + G VT++E
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLE 41
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 188 IHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTL 247
+H + D L E+ +G++ V+GGG GL A+ VL + G +VTL
Sbjct: 132 VHAVRTKEDADRLMAELDAGAK-----------NAVVIGGGYIGLEAAAVLTKFGVNVTL 180
Query: 248 IE 249
+E
Sbjct: 181 LE 182
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 233 FASLVLAE---LGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSD- 288
FAS L + LGADV L + +G +V E++ +F F + GAG
Sbjct: 190 FASPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGP 249
Query: 289 ----------GKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDG-KSHLGTDRLIPLLRN 337
LV R+ R+S + AV L A + +L G SH G +R
Sbjct: 250 FDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRG 309
Query: 338 F 338
F
Sbjct: 310 F 310
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIE 249
V V+GGG SGL A+ +L E G V ++E
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 613 LPGFISDTGLLHGVETRTSCPLQIPRN-NETCESTSLKGLYPVGEGAGYAGGIVSAAADG 671
+PG + + +GV R + L PR ET E +GLY G AG G + +AA G
Sbjct: 293 IPGLENAEIVRYGVMHRNTY-LNAPRLLGETLEFREAEGLYAAGVLAGVE-GYLESAATG 350
Query: 672 MYAGF-AVAKDFGLFPADI--ESILG 694
AG A K GL P ES+LG
Sbjct: 351 FLAGLNAARKALGLPPVAPPEESMLG 376
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIE 249
V V+GGG SGL A+ +L E G V ++E
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|1X74|A Chain A, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|B Chain B, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|C Chain C, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|D Chain D, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|2GCE|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2YIM|A Chain A, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|B Chain B, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|C Chain C, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|D Chain D, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
Length = 360
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD 260
V + G GP G A+++L +LGADV I+R +V+ RD
Sbjct: 11 VELAGIGP-GPHAAMILGDLGADVVRIDRPSSVDGISRD 48
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIE 249
V V+GGG SGL A+ +L E G V ++E
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLE 43
>pdb|2JHI|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Galactosamine
pdb|2JHK|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Glucosamine
Length = 218
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 643 CESTSLKGLYPVGEGAGYAGGIVSAAADGMYAGFAVAK 680
C +++L GLY +G YA GI +AA G + V++
Sbjct: 175 CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSE 212
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML 270
V V+G GP G A++ A+LG IE+ + + ++G + + +L
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALL 57
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML 270
V V+G GP G A++ A+LG IE+ + + ++G + + +L
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALL 57
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML 270
V V+G GP G A++ A+LG IE+ + + ++G + + +L
Sbjct: 30 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALL 78
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 173 EHMLD-----KRASGDLINIIHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGG 227
EH L+ +R S + I I K VS+ + ++ S +++ + K + +VGG
Sbjct: 141 EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLPKS-IVIVGG 199
Query: 228 GPSGLFASLVLAELGADVTLIERGQAV 254
G G+ + + LG TL+ RG +
Sbjct: 200 GYIGVEFANIFHGLGVKTTLLHRGDLI 226
>pdb|2JHH|C Chain C, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHH|F Chain F, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHL|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With
Sialic Acid
pdb|2JHM|F Chain F, Structure Of Globular Heads Of M-Ficolin At Neutral Ph
Length = 218
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 643 CESTSLKGLYPVGEGAGYAGGIVSAAADGMYAGFAVAK 680
C +++L GLY +G YA GI +AA G + V++
Sbjct: 175 CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSE 212
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 200 LRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254
L K I L + V ++GGG GL + ELG V +IER +
Sbjct: 167 LLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI 221
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257
++K V V+G GP G A++ A+LG LIE+ + E +
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 46 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 89
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 203 EISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254
E+ + S+G + K KV VVG G G+ + V LG++ L+ RG+ V
Sbjct: 170 ELGTDSDGFFRLEEQPK-KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV 220
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE 271
V+G GP G A++ A+LG V ++E+ +A+ +G + + +LE
Sbjct: 6 VIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLE 53
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 10 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 53
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 10 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 53
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 46 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 89
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 10 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 53
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261
+TR+ +VA GGG +GL A++ L + G DV L E+ + G I
Sbjct: 10 KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI 53
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 28/116 (24%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCF 278
K V +VG GPSG A+ VL E G V L + + + + AL
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALP------------- 435
Query: 279 GEGGAGTWS------DGKLVTRIGRNSNSVLAV------MNTLVHFGAPANILVDG 322
G G WS + ++ + +N S LA+ + ++ +GA I+ G
Sbjct: 436 ---GLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATG 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,604,889
Number of Sequences: 62578
Number of extensions: 867651
Number of successful extensions: 2487
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2331
Number of HSP's gapped (non-prelim): 178
length of query: 704
length of database: 14,973,337
effective HSP length: 106
effective length of query: 598
effective length of database: 8,340,069
effective search space: 4987361262
effective search space used: 4987361262
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)