BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005273
(704 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05627|Y202_CLOB8 Uncharacterized protein Cbei_0202 OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=Cbei_0202 PE=4 SV=2
Length = 533
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 207/555 (37%), Positives = 317/555 (57%), Gaps = 50/555 (9%)
Query: 137 EPKFVYTVDM---DVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINIIHDCKK 193
E K ++M D+S+L D+ R+ D + + KV ++ K+ L++ IHD K
Sbjct: 20 EKKICKKLNMSKEDISRL-DIIKRSIDARKKNDIKVSFSVNVFCKKEKM-LLSRIHD-KD 76
Query: 194 VSDDTLLRKE-ISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252
+S + + E I SG+E + K + VVG GP+G+FA+L LA G + ERG+
Sbjct: 77 ISFEEIREIESIKSGTEEI-------KARPVVVGFGPAGIFAALTLARYGYKPIVYERGE 129
Query: 253 AVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHF 312
V++R + L +ESN FGEGGAG +SDGKL TRI + S V++ L+
Sbjct: 130 DVDKRTETVEKFWKDGRLNLESNVQFGEGGAGAFSDGKLTTRIKDHRCSF--VLDELIKA 187
Query: 313 GAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSD 372
GAPA I + K+H+GTD L +++N R+ ++RLG + F ++++ + ++ ++ + V+
Sbjct: 188 GAPAEIKYESKAHVGTDLLKGVVKNIREEIKRLGGEVNFNSKLEKITYKDGKLESIVVNG 247
Query: 373 SKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEHPQELINSI 432
+ + +A++LA+GHS+RD YEML N+++ K FA+G+R+EHPQELIN
Sbjct: 248 ---------KNITCEALVLAIGHSSRDTYEMLYRENVSMDAKAFAIGVRIEHPQELINVN 298
Query: 433 QYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTS 492
QY K+ ADY++ Y S + R YSFCMCPGG +V +
Sbjct: 299 QYGN-----NHNHPKLHAADYRLT-YQSEK----------LKRGVYSFCMCPGGVVVAAA 342
Query: 493 TNPLELCINGMSFSRRSSRWANAALVVTVSAKDFDTLDLHGPLAGVKFQREFEQRAAIMG 552
+ L NGMS+ R AN+ALVVTVS +DF PL G++FQR +E A +G
Sbjct: 343 SEEGRLVSNGMSYHARDLDNANSALVVTVSPEDFKG---SSPLRGMEFQRHYESLAFKLG 399
Query: 553 GGNFVVPAQKVTDFLENKLS---ASPLPPSSYRLGVKAASLHELFPTHLTDALKHSISMF 609
GGN+ P Q V DF+++++S +P SY G + L E P ++ +ALK I F
Sbjct: 400 GGNYKAPVQLVGDFMKDRVSTKLGEVIP--SYTAGYEFRELKECLPDYVVEALKEGIINF 457
Query: 610 DEELPGFISDTGLLHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAGYAGGIVSAAA 669
D+++ G+ + +L G+ETRTS P+++ R N + ES ++ GLYP GEGAG+AGGI+SAA
Sbjct: 458 DKKIKGYAREDAILTGIETRTSAPVRLNR-NASLESINVCGLYPTGEGAGFAGGIISAAV 516
Query: 670 DGMYAGFAVAKDFGL 684
DG+ + + F L
Sbjct: 517 DGIKVAEHIIEKFDL 531
>sp|Q04564|TR2M_AGRVS Tryptophan 2-monooxygenase OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=iaaM PE=3 SV=1
Length = 723
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 208 SEGLYNYPR-TRKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQR 257
SEG+ ++P+ T+KPKVAV+G G SGL ++ +L G DVT+ E V R
Sbjct: 195 SEGVTSFPKETKKPKVAVIGAGISGLVSATLLLRNGIDDVTIFEAKNVVGGR 246
>sp|Q9HN74|DLDH_HALSA Dihydrolipoyl dehydrogenase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=lpdA PE=3 SV=1
Length = 474
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQAV-EQRGRDIGALVVRRMLEMESNFCFGEGG 282
+VGGG G+ S V A+LG DVT++E + Q G DI V +R E+ +F FG
Sbjct: 184 IVGGGYIGMELSTVFAKLGVDVTVVEMLDGILPQYGDDIARPVRQRAEELGIDFHFGL-A 242
Query: 283 AGTWSD 288
A +W+D
Sbjct: 243 ADSWTD 248
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
VAVVG GP G A++ +LG DVTL+E+
Sbjct: 11 DVAVVGAGPGGYVAAIRAGQLGLDVTLVEK 40
>sp|Q7D5C1|3O1D2_MYCTU 3-oxosteroid 1-dehydrogenase OS=Mycobacterium tuberculosis GN=kstD
PE=1 SV=1
Length = 566
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 322 GKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDI 381
GK+ +G R L+ R LQR GV ++ T DL +EN + GV V DS + ++
Sbjct: 201 GKNLVGMGRA--LIGPLRIGLQRAGVPVELNTAFTDLFVENGVVSGVYVRDSHEAESAEP 258
Query: 382 QKL-GFDAVILAVG 394
Q + VILA G
Sbjct: 259 QLIRARRGVILACG 272
>sp|P71864|3O1D1_MYCTU 3-oxosteroid 1-dehydrogenase OS=Mycobacterium tuberculosis GN=kstD
PE=1 SV=3
Length = 563
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 322 GKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDI 381
GK+ +G R L+ R LQR GV ++ T DL +EN + GV V DS + ++
Sbjct: 198 GKNLVGMGRA--LIGPLRIGLQRAGVPVELNTAFTDLFVENGVVSGVYVRDSHEAESAEP 255
Query: 382 QKL-GFDAVILAVG 394
Q + VILA G
Sbjct: 256 QLIRARRGVILACG 269
>sp|Q8Z5A6|PRET_SALTI NAD-dependent dihydropyrimidine dehydrogenase subunit PreT homolog
OS=Salmonella typhi GN=preT PE=3 SV=1
Length = 413
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 211 LYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+Y + KVA++G GP+GL AS+ L LG DVT+ E+
Sbjct: 116 IYQPGSKTRGKVAIIGAGPAGLQASVTLTHLGYDVTIYEK 155
>sp|Q8ZNL8|PRET_SALTY NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=preT PE=3 SV=1
Length = 413
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 211 LYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+Y + KVA++G GP+GL AS+ L LG DVT+ E+
Sbjct: 116 IYQPGSKTRGKVAIIGAGPAGLQASVTLTHLGYDVTIYEK 155
>sp|Q795R8|YTFP_BACSU Uncharacterized protein YtfP OS=Bacillus subtilis (strain 168)
GN=ytfP PE=4 SV=2
Length = 420
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI-----GALVVRRMLEMESNF 276
V V+GGGPSGL A++ E GA V LI++G + GR + G V L +E
Sbjct: 6 VIVIGGGPSGLMAAIAAGEQGAGVLLIDKGNKL---GRKLAISGGGRCNVTNRLPVEEII 62
Query: 277 CFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNT--LVHFGAPANILVDGKSH----LGTDR 330
K + GR S + N ++ F I + + H TD+
Sbjct: 63 -------------KHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDK 109
Query: 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVI 390
++ L++L VTI+ ++ +L E+ + G+ V+++ + S AVI
Sbjct: 110 AQSVVDALLNRLKQLRVTIRTNEKIKSVLYEDGQAAGI-VTNNGEMIHS-------QAVI 161
Query: 391 LAVG 394
+AVG
Sbjct: 162 IAVG 165
>sp|Q8BML1|MICA2_MOUSE Protein-methionine sulfoxide oxidase MICAL2 OS=Mus musculus
GN=Mical2 PE=1 SV=1
Length = 960
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 32/106 (30%)
Query: 151 LLDLEPRTW-DFISRLEAKVGSVE-----HMLDKRASGDLINIIHDCKKVSDDTLLRKEI 204
LLDL+P +F S+L++KV + + H LDKR S KE
Sbjct: 38 LLDLDPLDHRNFYSQLKSKVNTWKAKALWHKLDKRGS-------------------HKEY 78
Query: 205 SSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
G K +VGGGP GL ++ LA LGA V ++E+
Sbjct: 79 KRGKA-------CSNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEK 117
>sp|Q5UWH2|DLDH3_HALMA Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=lpdA3
PE=3 SV=1
Length = 477
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 208 SEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER-GQAVEQRGRDIGALVV 266
S+G N+ T ++ +VG G G+ + V + LG+DV++IE QA+ DI ++V
Sbjct: 169 SDGALNF-DTVPDELVIVGAGYIGMELATVYSRLGSDVSVIEMLEQALPSYEEDIASIVR 227
Query: 267 RRMLEMESNFCFGEGGAGTW--SDGKLV 292
+R + +F FG A +W SDGK V
Sbjct: 228 KRAERLGVDFHFGY-TADSWAASDGKAV 254
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252
T V V+G GP G A++ A+L DVTL+E+G+
Sbjct: 7 TTSTDVLVIGAGPGGYVAAIRAAQLALDVTLVEKGE 42
>sp|Q18KP1|RUBPS_HALWD Putative ribose 1,5-bisphosphate isomerase OS=Haloquadratum walsbyi
(strain DSM 16790) GN=HQ_1276A PE=3 SV=1
Length = 307
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
+V +VGGGPSGL + LAE G DVT++E+
Sbjct: 33 EVIIVGGGPSGLVTAKELAERGVDVTIVEK 62
>sp|Q9Z3S3|ORDL_RHIME Probable oxidoreductase OrdL OS=Rhizobium meliloti (strain 1021)
GN=ordL PE=4 SV=2
Length = 428
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249
P +RK VA++GGG +GL A+ LA G DVTLI+
Sbjct: 28 PGSRKADVAIIGGGYTGLQAACNLARSGTDVTLID 62
>sp|D4A1F2|MICA2_RAT Protein-methionine sulfoxide oxidase MICAL2 OS=Rattus norvegicus
GN=Mical2 PE=2 SV=1
Length = 961
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 32/106 (30%)
Query: 151 LLDLEPRTW-DFISRLEAKVGSVE-----HMLDKRASGDLINIIHDCKKVSDDTLLRKEI 204
LLDL+P +F ++L++KV + + H LDKR S KE
Sbjct: 38 LLDLDPLDHRNFYTQLKSKVNTWKAKALWHKLDKRGS-------------------HKEY 78
Query: 205 SSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
G K +VGGGP GL ++ LA LGA V ++E+
Sbjct: 79 KRGKA-------CSNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEK 117
>sp|Q04829|DLDH_HALVD Dihydrolipoyl dehydrogenase OS=Haloferax volcanii (strain ATCC
29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 /
VKM B-1768 / DS2) GN=lpdA PE=1 SV=3
Length = 475
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIER-GQAVEQRGRDIGALVVRRMLEMESN 275
T ++ VVGGG G+ S A+LGADVT++E + D+ +V +R E+ +
Sbjct: 177 TVPERLVVVGGGYIGMELSTTFAKLGADVTVVEMLDDILPGYESDVARVVRKRAEELGID 236
Query: 276 FCFGEGGAGTW---SDGKLVT 293
GEG +G W DG +VT
Sbjct: 237 MHLGEGASG-WREEDDGIMVT 256
>sp|B1YDX0|RUBPS_PYRNV Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=Tneu_1052 PE=3 SV=1
Length = 259
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 199 LLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+ R I G E LY Y VAVVG GP+GL A+ LAE G V + ER
Sbjct: 5 IARAIIKHGLEDLYEYSEV---DVAVVGAGPAGLTAARYLAERGHRVVVYER 53
>sp|A1RW13|RUBPS_PYRIL Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998
PE=3 SV=2
Length = 261
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 199 LLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+ R I G E LY Y VA+VG GP+GL A+ LAE G V + ER
Sbjct: 5 IARAIIKHGLEDLYEYSDV---DVAIVGAGPAGLTAARYLAERGHKVVVYER 53
>sp|A4WKY7|RUBPS_PYRAR Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498
PE=3 SV=2
Length = 261
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 201 RKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R I G E LY Y VA+VG GPSGL A+ LAE G V + ER
Sbjct: 7 RAIIKKGLEVLYEYSDV---DVAIVGAGPSGLTAARYLAEKGFKVLVFER 53
>sp|P50736|YPDA_BACSU Uncharacterized protein YpdA OS=Bacillus subtilis (strain 168)
GN=ypdA PE=4 SV=2
Length = 324
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254
+ K ++GGGP GL A++ L ++G D +IE+G V
Sbjct: 3 QEKAIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVV 38
>sp|A3MWF6|RUBPS_PYRCJ Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3
SV=1
Length = 261
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 201 RKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
R I G E LY Y VA+VG GP+GL A+ LAE G V + ER
Sbjct: 7 RAIIKHGLEDLYEYSDV---DVAIVGAGPAGLTAARYLAERGFKVLVFER 53
>sp|P68644|FIXC_ECOLI Protein FixC OS=Escherichia coli (strain K12) GN=fixC PE=3 SV=1
Length = 428
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGA 283
+VG G +G A+LVLA GA V +IERG + + G L + + F
Sbjct: 10 IVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGF------- 62
Query: 284 GTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRN-----F 338
+D V R+ ++ LA M A +G + R +LR+
Sbjct: 63 ---ADSAPVERL--ITHEKLAFMT---EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWL 114
Query: 339 RQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398
+ + G + G RVD+L+ + ++VGV ++D + VILA G ++
Sbjct: 115 MEQAEEAGAQLITGIRVDNLVQRDGKVVGV---------EADGDVIEAKTVILADGVNSI 165
Query: 399 DIYEMLVSHNINLVPKDFAVGLR--MEHPQELIN 430
++ ++ + P D AVG++ +E P+ +I
Sbjct: 166 LAEKLGMAKRVK--PTDVAVGVKELIELPKSVIE 197
>sp|P68645|FIXC_ECOL6 Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=fixC PE=3 SV=1
Length = 428
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 224 VVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGA 283
+VG G +G A+LVLA GA V +IERG + + G L + + F
Sbjct: 10 IVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGF------- 62
Query: 284 GTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRN-----F 338
+D V R+ ++ LA M A +G + R +LR+
Sbjct: 63 ---ADSAPVERL--ITHEKLAFMT---EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWL 114
Query: 339 RQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398
+ + G + G RVD+L+ + ++VGV ++D + VILA G ++
Sbjct: 115 MEQAEEAGAQLITGIRVDNLVQRDGKVVGV---------EADGDVIEAKTVILADGVNSI 165
Query: 399 DIYEMLVSHNINLVPKDFAVGLR--MEHPQELIN 430
++ ++ + P D AVG++ +E P+ +I
Sbjct: 166 LAEKLGMAKRVK--PTDVAVGVKELIELPKSVIE 197
>sp|P76440|PRET_ECOLI NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT
OS=Escherichia coli (strain K12) GN=preT PE=1 SV=1
Length = 412
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
KVA++G GP+GL AS+ L G DVT+ E+
Sbjct: 126 KVAIIGAGPAGLQASVTLTNQGYDVTIYEK 155
>sp|Q9HMC7|RUBPS_HALSA Putative ribose 1,5-bisphosphate isomerase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_2604G PE=3 SV=1
Length = 310
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+ V +VGGGPSGL A+ LA+ DVT+IE+
Sbjct: 31 ETDVIIVGGGPSGLMAAKELADRDVDVTIIEK 62
>sp|B0R884|RUBPS_HALS3 Putative ribose 1,5-bisphosphate isomerase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_4651F
PE=3 SV=1
Length = 310
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
+ V +VGGGPSGL A+ LA+ DVT+IE+
Sbjct: 31 ETDVIIVGGGPSGLMAAKELADRDVDVTIIEK 62
>sp|Q8X645|PRET_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Escherichia coli O157:H7 GN=preT PE=3 SV=1
Length = 412
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250
KVA++G GP+GL AS+ L G DVT+ E+
Sbjct: 126 KVAIIGAGPAGLQASVTLTNQGYDVTIYEK 155
>sp|Q5WWF9|MNMC_LEGPL tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Legionella pneumophila (strain Lens)
GN=mnmC PE=3 SV=1
Length = 666
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 213 NYPRTRKPKVA-VVGGGPSGLFASLVLAELGADVTLIERGQAV 254
NYP T++ + A +VGGG +G F + LA+ G +VT++E + V
Sbjct: 270 NYPVTKEERTALIVGGGLAGCFIANSLAKRGWEVTILEEKEKV 312
>sp|Q57NK9|DADA_SALCH D-amino acid dehydrogenase small subunit OS=Salmonella choleraesuis
(strain SC-B67) GN=dadA PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|F1MF74|MICA2_BOVIN Protein-methionine sulfoxide oxidase MICAL2 OS=Bos taurus GN=MICAL2
PE=3 SV=2
Length = 1101
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 32/109 (29%)
Query: 148 VSKLLDLEPRTW-DFISRLEAKVGSVE-----HMLDKRASGDLINIIHDCKKVSDDTLLR 201
+++ LDL+P +F S+L++KV + + + LDKR S
Sbjct: 35 LTRQLDLDPLDHRNFYSKLKSKVTTWKAKALWYKLDKRGS-------------------H 75
Query: 202 KEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
KE G + K ++GGGP GL ++ LA LGA V ++E+
Sbjct: 76 KEYKRGRSCM-------NTKCLIIGGGPCGLRTAIELAYLGAKVVVVEK 117
>sp|C0Q330|DADA_SALPC D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi C
(strain RKS4594) GN=dadA PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|Q8Z687|DADA_SALTI D-amino acid dehydrogenase small subunit OS=Salmonella typhi
GN=dadA PE=3 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|Q8ZP17|DADA_SALTY D-amino acid dehydrogenase small subunit OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B4TXX3|DADA_SALSV D-amino acid dehydrogenase small subunit OS=Salmonella
schwarzengrund (strain CVM19633) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B5BI50|DADA_SALPK D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi A
(strain AKU_12601) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|A9MVW7|DADA_SALPB D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|Q5PCU1|DADA_SALPA D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B4SUJ5|DADA_SALNS D-amino acid dehydrogenase small subunit OS=Salmonella newport
(strain SL254) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B4TKD3|DADA_SALHS D-amino acid dehydrogenase small subunit OS=Salmonella heidelberg
(strain SL476) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B5R2W7|DADA_SALEP D-amino acid dehydrogenase small subunit OS=Salmonella enteritidis
PT4 (strain P125109) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B5FTN1|DADA_SALDC D-amino acid dehydrogenase small subunit OS=Salmonella dublin
(strain CT_02021853) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|B5F4E4|DADA_SALA4 D-amino acid dehydrogenase small subunit OS=Salmonella agona
(strain SL483) GN=dadA PE=3 SV=1
Length = 432
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 338 FRQHLQRL----GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG 385
F Q L R+ GVT +F T V+ LL EN +I GVK +D + + + G
Sbjct: 203 FTQRLARMAEQAGVTFRFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFG 254
>sp|Q1H1H9|MNMC_METFK tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=mnmC PE=3 SV=2
Length = 647
Score = 36.2 bits (82), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 201 RKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR--G 258
++++ G L P R + V+GGG +G +S +LAE G V L+E+ A+ Q G
Sbjct: 226 KRDMLCGRFTLNERPAMRAGRAVVIGGGIAGTASSHMLAERGWQVNLVEQEPALAQHASG 285
Query: 259 RDIGAL 264
+G L
Sbjct: 286 NPVGVL 291
>sp|Q8N2N9|AN36B_HUMAN Ankyrin repeat domain-containing protein 36B OS=Homo sapiens
GN=ANKRD36B PE=2 SV=4
Length = 1353
Score = 36.2 bits (82), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 384 LGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEHPQELINSIQYSELATEVQK 443
LG A+ILAV +DI +L+ HNI++ +D L ++ E N + + +L E ++
Sbjct: 184 LGRSALILAVTLGEKDIVILLLQHNIDVFSRDVYGKLAEDYASEAENRVIF-DLIYEYKR 242
Query: 444 GR------GKVPVADYKV-AKYVSGEDGDALSGVVT 472
R PV+ K A+ + +D D++S + T
Sbjct: 243 KRYEDLPINSNPVSPQKQRAEKATSDDKDSVSNIAT 278
>sp|Q5UYG6|DLDH2_HALMA Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=lpdA2
PE=3 SV=1
Length = 472
Score = 36.2 bits (82), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVR-RMLEMESNFCFG 279
K+ VVG G G+ S V A+LGA+VT++E V D A VVR R E+ +F FG
Sbjct: 181 KLLVVGAGYIGMELSTVFAKLGAEVTVVEMLDDVLPGYEDDIATVVRDRAEELGIDFNFG 240
Query: 280 EGGAGTWSD 288
E A W +
Sbjct: 241 E-AADNWEE 248
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
T ++ V+GGGP G A++ A+LG D TL+ER
Sbjct: 7 TTGTELLVIGGGPGGYVAAIRGAQLGLDTTLVER 40
>sp|O94851|MICA2_HUMAN Protein-methionine sulfoxide oxidase MICAL2 OS=Homo sapiens
GN=MICAL2 PE=1 SV=1
Length = 1124
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 148 VSKLLDLEPRTW-DFISRLEAKVGSVE-----HMLDKRASGDLINIIHDCKKVSDDTLLR 201
+++ LDL+P +F S+L++KV + + + LDKR S
Sbjct: 35 LTRHLDLDPLDHRNFYSKLKSKVTTWKAKALWYKLDKRGS-------------------H 75
Query: 202 KEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250
KE G K +VGGGP GL ++ LA LGA V ++E+
Sbjct: 76 KEYKRGKS-------CTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEK 117
>sp|Q3ANV5|MURD_CHLCH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
chlorochromatii (strain CaD3) GN=murD PE=3 SV=1
Length = 464
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 221 KVAVVGGGPSGLFASLVLAELGADVTLIERG 251
KV V+GGG SG+ A+L+L +LGA V L E G
Sbjct: 7 KVTVLGGGKSGVAAALLLQQLGATVLLSEHG 37
>sp|A8ZVP3|THI4_DESOH Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans
(strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1
Length = 258
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 222 VAVVGGGPSGLFASLVLAELGADVTLIER 250
VAVVGGGPSGL A+ LA G V L ER
Sbjct: 28 VAVVGGGPSGLVAAWRLARAGRKVALFER 56
>sp|O17953|DLDH_CAEEL Dihydrolipoyl dehydrogenase, mitochondrial OS=Caenorhabditis
elegans GN=dld-1 PE=2 SV=2
Length = 495
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 213 NYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML 270
NY T+ + V+GGGP G A++ A+LG +E+ + ++G + + +L
Sbjct: 23 NYSNTQDADLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKALL 80
>sp|Q5X531|MNMC_LEGPA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Legionella pneumophila (strain Paris)
GN=mnmC PE=3 SV=1
Length = 666
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 213 NYPRTRKPKVA-VVGGGPSGLFASLVLAELGADVTLIERGQAV 254
NYP T+ + A +VGGG +G F + LA+ G +VT++E + V
Sbjct: 270 NYPVTKDERTALIVGGGLAGCFIANSLAKRGWEVTILEEKEKV 312
>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain
168) GN=gltB PE=2 SV=2
Length = 493
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 194 VSDDTLLRKEISSGSEGLYNYPRTRKP----KVAVVGGGPSGLFASLVLAELGADVTLIE 249
VS + R I G E + PR K KVA+VG GP+GL ++ L + G VT+ E
Sbjct: 123 VSIKNIERTIIDKGFENGWIQPRIPKKRTGKKVAIVGSGPAGLASADQLNQAGHSVTVFE 182
Query: 250 R 250
R
Sbjct: 183 R 183
>sp|Q5ZVA8|MNMC_LEGPH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=mnmC PE=3 SV=1
Length = 666
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 213 NYPRTRKPKVA-VVGGGPSGLFASLVLAELGADVTLIERGQAV 254
NYP T+ + A +VGGG +G F + LA+ G +VT++E + V
Sbjct: 270 NYPVTKDERTALIVGGGLAGCFIANSLAKRGWEVTILEEKEKV 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,588,216
Number of Sequences: 539616
Number of extensions: 11690463
Number of successful extensions: 35155
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 34857
Number of HSP's gapped (non-prelim): 350
length of query: 704
length of database: 191,569,459
effective HSP length: 125
effective length of query: 579
effective length of database: 124,117,459
effective search space: 71864008761
effective search space used: 71864008761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)