Query 005273
Match_columns 704
No_of_seqs 622 out of 5021
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2509 Uncharacterized FAD-de 100.0 6.1E-63 1.3E-67 520.0 34.3 478 80-683 1-484 (486)
2 PF03486 HI0933_like: HI0933-l 100.0 4.2E-38 9.1E-43 344.4 14.4 380 220-676 1-408 (409)
3 COG2081 Predicted flavoprotein 100.0 9.3E-36 2E-40 312.1 18.5 379 219-681 3-406 (408)
4 TIGR00275 flavoprotein, HI0933 100.0 4.3E-30 9.4E-35 283.4 19.1 380 223-676 1-400 (400)
5 COG0445 GidA Flavin-dependent 100.0 1.2E-27 2.7E-32 257.5 18.2 378 219-696 4-410 (621)
6 TIGR03862 flavo_PP4765 unchara 99.9 9.5E-26 2.1E-30 243.1 20.0 355 242-682 1-375 (376)
7 PRK05192 tRNA uridine 5-carbox 99.9 2.5E-24 5.4E-29 242.4 24.8 106 580-696 299-409 (618)
8 COG0029 NadB Aspartate oxidase 99.9 3.7E-24 8E-29 229.5 20.9 240 221-497 9-305 (518)
9 TIGR00136 gidA glucose-inhibit 99.9 2.5E-23 5.5E-28 233.9 25.6 105 582-696 299-408 (617)
10 KOG2311 NAD/FAD-utilizing prot 99.9 1E-24 2.2E-29 229.5 13.0 107 580-696 328-439 (679)
11 PRK06452 sdhA succinate dehydr 99.9 4.7E-21 1E-25 220.2 27.5 246 219-483 5-291 (566)
12 PF01134 GIDA: Glucose inhibit 99.9 6.9E-21 1.5E-25 204.6 22.7 144 221-396 1-151 (392)
13 PRK08626 fumarate reductase fl 99.9 1.6E-20 3.4E-25 218.5 26.5 246 219-483 5-314 (657)
14 PLN02815 L-aspartate oxidase 99.9 1.2E-20 2.5E-25 216.8 21.6 258 217-492 27-336 (594)
15 PRK07573 sdhA succinate dehydr 99.9 2.8E-20 6E-25 216.1 24.7 256 218-483 34-345 (640)
16 PTZ00139 Succinate dehydrogena 99.9 3.4E-20 7.5E-25 214.7 25.3 246 218-482 28-321 (617)
17 TIGR01811 sdhA_Bsu succinate d 99.9 1.6E-20 3.5E-25 216.8 22.3 251 222-483 1-309 (603)
18 PRK08958 sdhA succinate dehydr 99.9 3.5E-20 7.7E-25 213.6 24.6 244 219-482 7-298 (588)
19 PLN00128 Succinate dehydrogena 99.9 1.4E-20 3E-25 217.9 21.2 245 218-481 49-341 (635)
20 PRK06175 L-aspartate oxidase; 99.9 2.5E-20 5.3E-25 207.8 21.7 243 219-481 4-278 (433)
21 PRK05945 sdhA succinate dehydr 99.9 7.6E-20 1.7E-24 210.9 26.2 245 219-482 3-289 (575)
22 PRK09078 sdhA succinate dehydr 99.9 4.8E-20 1E-24 213.1 24.3 245 218-481 11-303 (598)
23 PRK07395 L-aspartate oxidase; 99.8 2.3E-20 5.1E-25 213.4 20.1 245 218-482 8-291 (553)
24 TIGR00551 nadB L-aspartate oxi 99.8 4.1E-20 9E-25 209.4 21.5 244 219-482 2-283 (488)
25 PRK07512 L-aspartate oxidase; 99.8 9.4E-20 2E-24 207.3 24.2 243 218-481 8-290 (513)
26 PRK08071 L-aspartate oxidase; 99.8 4.7E-20 1E-24 209.6 21.4 252 219-491 3-292 (510)
27 PRK07804 L-aspartate oxidase; 99.8 1.6E-19 3.4E-24 206.8 25.4 250 218-481 15-306 (541)
28 TIGR01812 sdhA_frdA_Gneg succi 99.8 1.2E-19 2.6E-24 209.5 24.3 242 221-481 1-282 (566)
29 PRK09231 fumarate reductase fl 99.8 1.2E-19 2.5E-24 209.2 23.9 244 219-482 4-299 (582)
30 PRK06069 sdhA succinate dehydr 99.8 1.7E-19 3.6E-24 208.3 24.6 244 219-482 5-292 (577)
31 TIGR01176 fum_red_Fp fumarate 99.8 1.9E-19 4.1E-24 207.1 23.5 244 219-482 3-298 (580)
32 PRK07057 sdhA succinate dehydr 99.8 2.6E-19 5.7E-24 206.7 24.6 246 219-483 12-304 (591)
33 PRK07803 sdhA succinate dehydr 99.8 8.7E-20 1.9E-24 211.8 20.1 232 219-466 8-286 (626)
34 PRK08401 L-aspartate oxidase; 99.8 2E-19 4.3E-24 202.6 20.8 245 220-491 2-270 (466)
35 PRK08205 sdhA succinate dehydr 99.8 2.2E-19 4.8E-24 207.3 21.5 243 219-481 5-297 (583)
36 PRK08641 sdhA succinate dehydr 99.8 8.3E-19 1.8E-23 202.5 25.7 246 219-481 3-296 (589)
37 PRK06263 sdhA succinate dehydr 99.8 2.3E-19 5E-24 205.8 20.3 244 219-481 7-292 (543)
38 PRK09077 L-aspartate oxidase; 99.8 5.6E-19 1.2E-23 202.1 22.5 245 218-480 7-299 (536)
39 PRK06481 fumarate reductase fl 99.8 1.6E-18 3.5E-23 197.1 23.8 248 218-479 60-345 (506)
40 KOG2404 Fumarate reductase, fl 99.8 1.6E-19 3.6E-24 182.4 12.4 247 221-479 11-308 (477)
41 PRK06854 adenylylsulfate reduc 99.8 7E-18 1.5E-22 195.3 25.7 256 219-494 11-315 (608)
42 PRK08275 putative oxidoreducta 99.8 9.9E-18 2.2E-22 192.7 22.5 256 219-494 9-304 (554)
43 COG1053 SdhA Succinate dehydro 99.8 6.8E-18 1.5E-22 191.5 17.4 256 218-486 5-300 (562)
44 PTZ00306 NADH-dependent fumara 99.8 1.3E-16 2.9E-21 196.6 27.3 252 217-481 407-726 (1167)
45 PRK13800 putative oxidoreducta 99.8 6E-17 1.3E-21 195.6 23.6 174 218-398 12-206 (897)
46 PRK07121 hypothetical protein; 99.8 3.1E-17 6.7E-22 186.4 19.9 247 218-479 19-325 (492)
47 TIGR02061 aprA adenosine phosp 99.7 1.6E-16 3.6E-21 182.7 25.4 171 221-398 1-192 (614)
48 TIGR01813 flavo_cyto_c flavocy 99.7 6.4E-17 1.4E-21 181.3 18.5 250 221-480 1-288 (439)
49 PRK12844 3-ketosteroid-delta-1 99.7 6E-16 1.3E-20 177.8 25.3 181 219-408 6-279 (557)
50 PRK12845 3-ketosteroid-delta-1 99.7 1.3E-16 2.8E-21 183.0 19.5 141 333-479 218-376 (564)
51 PRK08274 tricarballylate dehyd 99.7 2.5E-15 5.5E-20 169.7 29.5 174 219-399 4-194 (466)
52 PRK12837 3-ketosteroid-delta-1 99.7 1.7E-16 3.8E-21 180.8 19.2 251 219-480 7-329 (513)
53 TIGR00137 gid_trmFO tRNA:m(5)U 99.7 2.4E-16 5.2E-21 172.3 15.5 103 583-696 271-379 (433)
54 PF00890 FAD_binding_2: FAD bi 99.7 7E-16 1.5E-20 171.7 18.4 168 221-398 1-204 (417)
55 PRK05675 sdhA succinate dehydr 99.7 1.1E-15 2.3E-20 176.0 19.9 231 232-481 1-280 (570)
56 PRK05335 tRNA (uracil-5-)-meth 99.7 7.5E-16 1.6E-20 167.3 16.1 102 583-695 272-379 (436)
57 TIGR02485 CobZ_N-term precorri 99.7 8.7E-15 1.9E-19 163.7 24.0 166 224-399 1-185 (432)
58 PRK12842 putative succinate de 99.6 6.6E-15 1.4E-19 170.1 20.7 68 333-406 215-283 (574)
59 PRK12835 3-ketosteroid-delta-1 99.6 6.3E-15 1.4E-19 170.0 20.4 70 334-409 215-286 (584)
60 TIGR01816 sdhA_forward succina 99.6 3E-15 6.6E-20 172.3 16.4 225 238-481 1-272 (565)
61 PRK12839 hypothetical protein; 99.6 2E-14 4.3E-19 165.5 21.7 69 333-406 215-284 (572)
62 PRK12779 putative bifunctional 99.6 6E-16 1.3E-20 186.0 9.5 183 110-396 213-403 (944)
63 PRK12834 putative FAD-binding 99.6 9.4E-14 2E-18 159.8 26.6 186 219-407 4-236 (549)
64 PRK07843 3-ketosteroid-delta-1 99.6 9.3E-15 2E-19 168.1 18.2 139 333-478 209-364 (557)
65 PRK06134 putative FAD-binding 99.6 4.5E-14 9.7E-19 163.3 22.3 63 333-400 218-281 (581)
66 PRK12843 putative FAD-binding 99.6 1.1E-13 2.3E-18 160.0 24.4 70 333-408 222-292 (578)
67 PRK12831 putative oxidoreducta 99.6 4.9E-15 1.1E-19 166.7 9.1 123 110-255 53-176 (464)
68 PRK12769 putative oxidoreducta 99.6 4E-15 8.6E-20 174.5 8.1 124 110-255 239-363 (654)
69 PRK12775 putative trifunctiona 99.6 5.5E-15 1.2E-19 179.2 9.3 122 110-255 344-466 (1006)
70 PRK09853 putative selenate red 99.5 2E-14 4.3E-19 170.6 12.6 123 110-256 452-576 (1019)
71 TIGR01318 gltD_gamma_fam gluta 99.5 6.5E-15 1.4E-19 165.9 7.9 124 110-255 53-177 (467)
72 PRK12809 putative oxidoreducta 99.5 6E-15 1.3E-19 172.3 7.6 124 110-255 222-346 (639)
73 KOG0399 Glutamate synthase [Am 99.5 1.5E-14 3.2E-19 164.6 7.0 121 110-255 1699-1821(2142)
74 TIGR03315 Se_ygfK putative sel 99.5 3.3E-14 7.2E-19 169.5 10.3 123 110-256 450-574 (1012)
75 PRK12810 gltD glutamate syntha 99.5 3.5E-14 7.7E-19 160.3 7.5 122 110-255 57-179 (471)
76 PRK12778 putative bifunctional 99.5 5.1E-14 1.1E-18 167.7 7.6 124 110-255 342-467 (752)
77 TIGR01317 GOGAT_sm_gam glutama 99.5 1E-13 2.2E-18 157.0 8.3 122 110-255 57-179 (485)
78 PRK04176 ribulose-1,5-biphosph 99.4 3.4E-12 7.5E-17 132.4 18.1 153 218-404 24-180 (257)
79 TIGR00292 thiazole biosynthesi 99.4 5E-12 1.1E-16 130.8 18.6 157 218-408 20-181 (254)
80 TIGR01316 gltA glutamate synth 99.4 1.7E-13 3.6E-18 153.9 7.7 124 110-255 41-169 (449)
81 PRK12814 putative NADPH-depend 99.4 2.7E-13 5.9E-18 158.6 6.8 122 110-255 107-229 (652)
82 COG1635 THI4 Ribulose 1,5-bisp 99.4 7.5E-12 1.6E-16 121.8 15.4 148 219-400 30-181 (262)
83 COG0493 GltD NADPH-dependent g 99.4 2.7E-13 5.8E-18 150.4 6.0 185 110-397 35-220 (457)
84 PRK11749 dihydropyrimidine deh 99.4 5.7E-13 1.2E-17 150.1 7.4 123 110-255 53-176 (457)
85 PF01266 DAO: FAD dependent ox 99.3 5.9E-12 1.3E-16 136.1 10.0 177 221-409 1-212 (358)
86 PF01946 Thi4: Thi4 family; PD 99.3 3.4E-11 7.5E-16 118.1 13.4 146 219-398 17-166 (230)
87 PRK12771 putative glutamate sy 99.3 4.5E-12 9.8E-17 146.5 7.7 122 109-255 51-173 (564)
88 PRK06567 putative bifunctional 99.3 5.5E-12 1.2E-16 148.1 8.2 124 109-254 282-418 (1028)
89 PLN02661 Putative thiazole syn 99.3 9.1E-11 2E-15 124.9 16.3 149 216-398 89-245 (357)
90 PRK13984 putative oxidoreducta 99.2 1.6E-11 3.4E-16 143.2 8.6 122 110-255 196-319 (604)
91 PRK11101 glpA sn-glycerol-3-ph 99.2 2.2E-10 4.7E-15 131.8 16.7 183 219-404 6-218 (546)
92 TIGR01377 soxA_mon sarcosine o 99.2 3.7E-10 8.1E-15 124.0 17.0 171 220-402 1-205 (380)
93 PRK10157 putative oxidoreducta 99.1 6.9E-10 1.5E-14 124.0 16.7 152 219-398 5-165 (428)
94 COG0644 FixC Dehydrogenases (f 99.1 1.2E-09 2.5E-14 121.1 16.3 155 219-410 3-161 (396)
95 PRK00711 D-amino acid dehydrog 99.1 1.1E-09 2.4E-14 121.8 14.7 63 330-401 199-261 (416)
96 PRK11259 solA N-methyltryptoph 99.1 2.5E-09 5.5E-14 117.2 17.2 170 219-400 3-207 (376)
97 PRK10015 oxidoreductase; Provi 99.1 1.7E-09 3.8E-14 120.8 15.9 155 219-398 5-165 (429)
98 PF12831 FAD_oxidored: FAD dep 99.1 8.3E-11 1.8E-15 131.4 5.1 147 221-395 1-148 (428)
99 PRK11728 hydroxyglutarate oxid 99.1 2.1E-09 4.5E-14 118.9 16.1 172 220-402 3-209 (393)
100 TIGR02032 GG-red-SF geranylger 99.1 4.3E-09 9.3E-14 110.9 16.8 147 220-398 1-149 (295)
101 PRK06185 hypothetical protein; 99.0 5.6E-09 1.2E-13 115.9 16.9 156 218-398 5-170 (407)
102 PF01494 FAD_binding_3: FAD bi 99.0 1.4E-09 2.9E-14 117.5 11.4 63 333-399 112-174 (356)
103 PRK06184 hypothetical protein; 99.0 4.5E-09 9.7E-14 120.1 15.7 166 219-412 3-179 (502)
104 TIGR03329 Phn_aa_oxid putative 99.0 2.8E-09 6.2E-14 120.3 13.6 174 215-399 20-239 (460)
105 PRK12409 D-amino acid dehydrog 99.0 6.2E-09 1.3E-13 115.7 16.2 69 330-402 195-263 (410)
106 cd02931 ER_like_FMN Enoate red 99.0 1.6E-10 3.5E-15 126.6 3.0 126 49-195 248-382 (382)
107 TIGR01373 soxB sarcosine oxida 99.0 1.5E-08 3.3E-13 112.5 18.7 176 217-401 28-244 (407)
108 PRK07364 2-octaprenyl-6-methox 99.0 3.5E-09 7.5E-14 117.8 12.9 157 218-398 17-182 (415)
109 PRK08244 hypothetical protein; 99.0 7.2E-09 1.6E-13 118.1 15.7 156 219-398 2-160 (493)
110 PRK06847 hypothetical protein; 99.0 6.6E-09 1.4E-13 114.0 14.7 153 219-399 4-165 (375)
111 COG1249 Lpd Pyruvate/2-oxoglut 99.0 4.8E-09 1E-13 116.6 13.2 149 217-444 171-334 (454)
112 COG0579 Predicted dehydrogenas 99.0 1.5E-08 3.2E-13 111.1 16.7 179 219-411 3-222 (429)
113 PRK06834 hypothetical protein; 99.0 1.2E-08 2.6E-13 115.8 16.6 164 219-414 3-169 (488)
114 PF13738 Pyr_redox_3: Pyridine 99.0 5.6E-09 1.2E-13 104.1 12.3 136 223-397 1-138 (203)
115 PLN02172 flavin-containing mon 99.0 7.6E-09 1.7E-13 116.3 14.7 160 218-397 9-173 (461)
116 COG0654 UbiH 2-polyprenyl-6-me 99.0 6.9E-09 1.5E-13 114.5 14.1 58 332-398 104-163 (387)
117 PLN02464 glycerol-3-phosphate 98.9 4.9E-09 1.1E-13 122.2 12.8 72 330-404 230-303 (627)
118 PRK06126 hypothetical protein; 98.9 1.4E-08 3E-13 117.3 16.4 71 334-412 128-199 (545)
119 PRK07190 hypothetical protein; 98.9 1.7E-08 3.6E-13 114.6 16.6 163 219-412 5-176 (487)
120 TIGR03364 HpnW_proposed FAD de 98.9 3.3E-09 7.2E-14 116.0 10.3 57 330-400 143-200 (365)
121 COG0665 DadA Glycine/D-amino a 98.9 1.5E-08 3.2E-13 111.6 14.5 177 218-404 3-219 (387)
122 PRK08773 2-octaprenyl-3-methyl 98.9 1.8E-08 3.9E-13 111.3 15.2 58 332-398 113-170 (392)
123 TIGR02023 BchP-ChlP geranylger 98.9 1.6E-08 3.6E-13 111.6 14.8 151 220-398 1-156 (388)
124 PRK07333 2-octaprenyl-6-methox 98.9 1E-08 2.3E-13 113.5 13.2 58 332-398 111-168 (403)
125 TIGR01988 Ubi-OHases Ubiquinon 98.9 1.3E-08 2.7E-13 111.9 13.5 57 333-398 107-164 (385)
126 PRK05714 2-octaprenyl-3-methyl 98.9 1.2E-08 2.7E-13 113.2 13.5 58 332-398 112-169 (405)
127 PTZ00383 malate:quinone oxidor 98.9 1.9E-08 4.1E-13 113.7 14.9 64 330-402 209-278 (497)
128 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.6E-08 7.8E-13 113.6 17.5 158 217-398 8-175 (538)
129 PRK07608 ubiquinone biosynthes 98.9 2.5E-08 5.4E-13 109.9 15.4 155 219-398 5-168 (388)
130 PRK08163 salicylate hydroxylas 98.9 1.6E-08 3.5E-13 111.8 13.6 154 219-399 4-168 (396)
131 KOG2415 Electron transfer flav 98.9 1.5E-08 3.3E-13 106.8 12.0 183 217-420 74-281 (621)
132 TIGR01292 TRX_reduct thioredox 98.9 2.9E-08 6.3E-13 105.0 14.6 113 220-398 1-113 (300)
133 PRK12266 glpD glycerol-3-phosp 98.9 3.5E-08 7.5E-13 112.7 15.8 68 331-402 154-221 (508)
134 cd02929 TMADH_HD_FMN Trimethyl 98.9 1.2E-09 2.5E-14 119.3 3.4 122 50-196 236-366 (370)
135 PLN02463 lycopene beta cyclase 98.8 2.4E-08 5.3E-13 111.6 13.8 146 216-398 25-170 (447)
136 COG0578 GlpA Glycerol-3-phosph 98.8 5E-08 1.1E-12 109.0 16.1 68 333-404 165-232 (532)
137 PRK08013 oxidoreductase; Provi 98.8 2.9E-08 6.2E-13 110.1 14.1 57 333-398 112-169 (400)
138 TIGR01320 mal_quin_oxido malat 98.8 4.2E-08 9.1E-13 111.0 15.6 75 330-410 176-250 (483)
139 COG0492 TrxB Thioredoxin reduc 98.8 3.4E-08 7.4E-13 104.7 13.9 112 219-398 3-116 (305)
140 TIGR01984 UbiH 2-polyprenyl-6- 98.8 3.3E-08 7.1E-13 108.8 14.4 58 332-398 105-163 (382)
141 PF00070 Pyr_redox: Pyridine n 98.8 4.7E-08 1E-12 82.6 11.9 80 221-373 1-80 (80)
142 KOG2403 Succinate dehydrogenas 98.8 9.4E-09 2E-13 112.0 9.3 251 219-480 55-344 (642)
143 PRK13369 glycerol-3-phosphate 98.8 8.9E-08 1.9E-12 109.3 17.8 67 331-402 154-220 (502)
144 KOG0404 Thioredoxin reductase 98.8 6.2E-08 1.3E-12 94.6 13.9 117 219-398 8-125 (322)
145 PRK06617 2-octaprenyl-6-methox 98.8 4.6E-08 1E-12 107.5 15.0 57 332-398 104-161 (374)
146 PRK07236 hypothetical protein; 98.8 5.9E-08 1.3E-12 107.1 15.5 35 219-253 6-40 (386)
147 PRK07045 putative monooxygenas 98.8 1.6E-08 3.6E-13 111.5 11.0 152 219-399 5-167 (388)
148 PLN02697 lycopene epsilon cycl 98.8 4.7E-08 1E-12 111.2 14.7 144 217-398 106-249 (529)
149 PRK08132 FAD-dependent oxidore 98.8 7.9E-08 1.7E-12 111.0 16.7 161 218-398 22-186 (547)
150 PRK09126 hypothetical protein; 98.8 6.3E-08 1.4E-12 106.9 15.1 57 333-398 111-168 (392)
151 PRK01747 mnmC bifunctional tRN 98.8 7E-08 1.5E-12 113.9 16.3 62 328-399 404-465 (662)
152 PRK07494 2-octaprenyl-6-methox 98.8 6.5E-08 1.4E-12 106.7 15.0 150 219-398 7-168 (388)
153 TIGR02028 ChlP geranylgeranyl 98.8 5.7E-08 1.2E-12 107.6 14.5 152 220-398 1-161 (398)
154 PRK08243 4-hydroxybenzoate 3-m 98.8 3E-08 6.6E-13 109.6 12.3 60 333-398 104-164 (392)
155 PLN02985 squalene monooxygenas 98.8 9.1E-08 2E-12 109.1 16.4 159 217-399 41-210 (514)
156 PRK13977 myosin-cross-reactive 98.8 1.6E-07 3.6E-12 106.1 18.1 67 330-398 224-294 (576)
157 cd02930 DCR_FMN 2,4-dienoyl-Co 98.8 2E-09 4.3E-14 117.1 2.6 121 39-170 208-339 (353)
158 PRK07588 hypothetical protein; 98.8 3.4E-08 7.3E-13 109.1 12.2 56 334-399 105-160 (391)
159 PRK06475 salicylate hydroxylas 98.8 8.1E-08 1.8E-12 106.5 14.9 159 220-399 3-169 (400)
160 KOG2844 Dimethylglycine dehydr 98.8 4E-08 8.7E-13 109.2 11.9 182 218-414 38-259 (856)
161 PRK15317 alkyl hydroperoxide r 98.8 6.9E-08 1.5E-12 110.6 14.3 115 217-398 209-323 (517)
162 KOG2820 FAD-dependent oxidored 98.8 3.3E-08 7.1E-13 102.3 10.3 167 218-399 6-214 (399)
163 PRK08849 2-octaprenyl-3-methyl 98.8 8E-08 1.7E-12 105.9 14.3 57 333-398 111-168 (384)
164 PRK08020 ubiF 2-octaprenyl-3-m 98.8 9.1E-08 2E-12 105.7 14.6 57 333-398 113-170 (391)
165 PRK06753 hypothetical protein; 98.8 5.7E-08 1.2E-12 106.5 12.8 36 220-255 1-36 (373)
166 PLN00093 geranylgeranyl diphos 98.8 2.9E-07 6.3E-12 103.4 18.4 37 217-253 37-73 (450)
167 PRK05868 hypothetical protein; 98.7 5.5E-08 1.2E-12 106.8 12.2 36 220-255 2-37 (372)
168 TIGR03143 AhpF_homolog putativ 98.7 7.8E-08 1.7E-12 111.0 14.0 112 219-398 4-115 (555)
169 TIGR01790 carotene-cycl lycope 98.7 9.2E-08 2E-12 105.5 14.0 141 221-397 1-141 (388)
170 PRK08850 2-octaprenyl-6-methox 98.7 1.1E-07 2.5E-12 105.5 14.8 57 333-398 112-169 (405)
171 TIGR03140 AhpF alkyl hydropero 98.7 1.1E-07 2.3E-12 108.9 14.4 114 217-397 210-323 (515)
172 PRK11445 putative oxidoreducta 98.7 1.7E-07 3.8E-12 102.0 15.1 34 220-254 2-35 (351)
173 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 8.7E-08 1.9E-12 105.9 12.9 60 333-398 104-164 (390)
174 PRK05732 2-octaprenyl-6-methox 98.7 1.6E-07 3.5E-12 103.7 15.0 57 333-398 113-170 (395)
175 PRK08294 phenol 2-monooxygenas 98.7 1.7E-07 3.8E-12 109.5 15.8 175 219-413 32-222 (634)
176 KOG4254 Phytoene desaturase [C 98.7 1.1E-06 2.3E-11 94.3 19.8 57 332-396 264-320 (561)
177 PRK13339 malate:quinone oxidor 98.7 1.9E-07 4.1E-12 105.4 15.0 73 330-410 182-257 (497)
178 KOG1335 Dihydrolipoamide dehyd 98.7 1.2E-07 2.7E-12 99.3 12.2 113 326-441 246-373 (506)
179 PRK07538 hypothetical protein; 98.7 1.5E-07 3.3E-12 104.8 13.7 36 220-255 1-36 (413)
180 TIGR01421 gluta_reduc_1 glutat 98.7 6.6E-08 1.4E-12 108.9 10.8 37 219-256 2-38 (450)
181 PRK05257 malate:quinone oxidor 98.7 3.7E-07 8.1E-12 103.5 16.4 75 330-410 181-256 (494)
182 PRK06467 dihydrolipoamide dehy 98.7 1.4E-07 3E-12 106.9 12.5 39 219-257 4-42 (471)
183 TIGR01989 COQ6 Ubiquinone bios 98.6 2.3E-07 5E-12 104.2 13.5 69 333-413 118-195 (437)
184 TIGR01424 gluta_reduc_2 glutat 98.6 1.5E-07 3.3E-12 105.9 11.9 38 219-257 2-39 (446)
185 COG1233 Phytoene dehydrogenase 98.6 2.3E-07 5E-12 105.4 13.3 58 330-395 222-279 (487)
186 TIGR01421 gluta_reduc_1 glutat 98.6 2.8E-07 6.1E-12 103.8 13.8 102 219-399 166-267 (450)
187 PRK05249 soluble pyridine nucl 98.6 2.4E-07 5.2E-12 104.7 13.2 142 218-440 174-330 (461)
188 PRK10262 thioredoxin reductase 98.6 5.3E-07 1.2E-11 96.9 15.3 115 217-398 4-118 (321)
189 PRK07818 dihydrolipoamide dehy 98.6 3.3E-07 7.2E-12 103.7 14.2 149 219-444 172-335 (466)
190 PRK06416 dihydrolipoamide dehy 98.6 3.9E-07 8.4E-12 103.1 14.7 38 219-257 4-41 (462)
191 PRK09897 hypothetical protein; 98.6 8.8E-07 1.9E-11 100.9 17.4 151 220-397 2-166 (534)
192 PLN02852 ferredoxin-NADP+ redu 98.6 5.7E-08 1.2E-12 109.3 7.5 39 217-255 24-64 (491)
193 PRK06116 glutathione reductase 98.6 3E-07 6.6E-12 103.6 13.5 101 219-399 167-267 (450)
194 PRK06416 dihydrolipoamide dehy 98.6 2.8E-07 6.1E-12 104.2 13.1 144 219-440 172-329 (462)
195 TIGR02730 carot_isom carotene 98.6 1.2E-06 2.6E-11 99.9 18.3 59 331-397 228-286 (493)
196 PF00743 FMO-like: Flavin-bind 98.6 2.2E-07 4.8E-12 106.0 12.2 143 220-397 2-150 (531)
197 TIGR01350 lipoamide_DH dihydro 98.6 3E-07 6.6E-12 103.9 13.2 143 219-440 170-327 (461)
198 PRK05249 soluble pyridine nucl 98.6 1.3E-07 2.7E-12 107.0 10.0 39 219-257 5-43 (461)
199 KOG1399 Flavin-containing mono 98.6 3.7E-07 8E-12 101.3 13.2 137 219-397 6-153 (448)
200 COG1206 Gid NAD(FAD)-utilizing 98.6 2.4E-07 5.2E-12 95.4 10.2 73 609-684 295-373 (439)
201 TIGR01423 trypano_reduc trypan 98.6 3.3E-07 7.2E-12 103.9 12.5 140 219-438 187-344 (486)
202 PRK04965 NADH:flavorubredoxin 98.6 1.1E-06 2.4E-11 96.7 16.3 124 219-424 141-277 (377)
203 PRK09754 phenylpropionate diox 98.6 1E-06 2.2E-11 97.6 15.9 123 219-424 144-279 (396)
204 PRK06116 glutathione reductase 98.6 2.9E-07 6.3E-12 103.7 11.3 37 219-256 4-40 (450)
205 PRK05976 dihydrolipoamide dehy 98.6 3.2E-07 7E-12 104.0 11.7 39 218-257 3-41 (472)
206 PRK06370 mercuric reductase; V 98.6 2.6E-07 5.6E-12 104.5 10.9 34 219-252 5-38 (463)
207 PRK07233 hypothetical protein; 98.6 1.7E-06 3.6E-11 96.7 17.2 56 331-395 197-252 (434)
208 PRK06912 acoL dihydrolipoamide 98.6 4.3E-07 9.4E-12 102.6 12.6 101 219-399 170-270 (458)
209 PRK06370 mercuric reductase; V 98.6 5.3E-07 1.2E-11 102.0 13.3 103 219-399 171-273 (463)
210 cd04734 OYE_like_3_FMN Old yel 98.6 3.5E-08 7.6E-13 106.7 3.5 117 39-165 212-343 (343)
211 TIGR03219 salicylate_mono sali 98.6 5.4E-07 1.2E-11 100.4 13.1 35 221-255 2-37 (414)
212 PRK05976 dihydrolipoamide dehy 98.5 4.9E-07 1.1E-11 102.6 12.6 103 219-399 180-283 (472)
213 PRK06996 hypothetical protein; 98.5 7.5E-07 1.6E-11 98.7 13.8 59 332-396 115-173 (398)
214 PRK06327 dihydrolipoamide dehy 98.5 7.3E-07 1.6E-11 101.2 13.9 104 219-399 183-286 (475)
215 PRK08010 pyridine nucleotide-d 98.5 7.8E-07 1.7E-11 100.0 13.7 99 219-399 158-256 (441)
216 PTZ00367 squalene epoxidase; P 98.5 7.6E-07 1.6E-11 102.4 13.7 35 218-252 32-66 (567)
217 PRK09564 coenzyme A disulfide 98.5 1.5E-06 3.3E-11 97.6 16.0 123 219-424 149-286 (444)
218 PRK07845 flavoprotein disulfid 98.5 7.1E-07 1.5E-11 101.0 13.0 100 219-399 177-276 (466)
219 PRK06115 dihydrolipoamide dehy 98.5 1E-06 2.2E-11 99.8 14.0 106 218-399 173-278 (466)
220 TIGR02053 MerA mercuric reduct 98.5 7.9E-07 1.7E-11 100.6 13.1 103 219-399 166-268 (463)
221 PRK14727 putative mercuric red 98.5 8.3E-07 1.8E-11 100.8 13.2 138 219-439 188-340 (479)
222 PRK06115 dihydrolipoamide dehy 98.5 6.3E-07 1.4E-11 101.4 12.1 39 219-257 3-41 (466)
223 PF07992 Pyr_redox_2: Pyridine 98.5 2.6E-07 5.6E-12 91.8 7.9 115 221-397 1-122 (201)
224 PRK07251 pyridine nucleotide-d 98.5 1.1E-06 2.4E-11 98.7 13.8 38 219-256 3-41 (438)
225 PF00732 GMC_oxred_N: GMC oxid 98.5 7.2E-07 1.6E-11 94.6 11.6 72 334-409 195-268 (296)
226 KOG1298 Squalene monooxygenase 98.5 8.3E-07 1.8E-11 93.3 11.5 174 217-424 43-233 (509)
227 PRK14694 putative mercuric red 98.5 9.9E-07 2.1E-11 99.9 13.1 127 219-428 178-318 (468)
228 PRK13748 putative mercuric red 98.5 8.4E-07 1.8E-11 102.9 12.7 127 219-428 270-411 (561)
229 TIGR02733 desat_CrtD C-3',4' d 98.5 4.3E-06 9.2E-11 95.4 18.2 63 331-396 231-293 (492)
230 COG3380 Predicted NAD/FAD-depe 98.5 7.1E-07 1.5E-11 90.0 10.2 142 221-395 3-158 (331)
231 PLN02507 glutathione reductase 98.5 1E-06 2.2E-11 100.4 13.0 100 219-399 203-302 (499)
232 PRK14989 nitrite reductase sub 98.5 1.6E-06 3.6E-11 104.1 15.3 126 219-425 145-286 (847)
233 PRK07251 pyridine nucleotide-d 98.5 1.4E-06 3E-11 97.9 13.8 98 219-398 157-254 (438)
234 PRK06467 dihydrolipoamide dehy 98.5 1E-06 2.2E-11 99.8 12.7 143 219-439 174-331 (471)
235 TIGR01424 gluta_reduc_2 glutat 98.5 9.1E-07 2E-11 99.6 12.1 100 219-399 166-265 (446)
236 PF05834 Lycopene_cycl: Lycope 98.5 6.3E-07 1.4E-11 98.5 10.4 132 221-397 1-142 (374)
237 PLN02507 glutathione reductase 98.5 1.4E-06 3E-11 99.4 13.3 34 217-250 23-56 (499)
238 TIGR02734 crtI_fam phytoene de 98.5 1.7E-06 3.8E-11 98.8 14.3 57 332-396 219-275 (502)
239 TIGR01350 lipoamide_DH dihydro 98.4 9.4E-07 2E-11 99.9 11.6 37 220-257 2-38 (461)
240 PTZ00188 adrenodoxin reductase 98.4 2.9E-07 6.3E-12 102.2 7.0 40 217-256 37-77 (506)
241 PTZ00058 glutathione reductase 98.4 7.7E-07 1.7E-11 102.3 10.7 41 216-257 45-85 (561)
242 PRK07208 hypothetical protein; 98.4 7.2E-06 1.6E-10 93.2 18.4 40 219-258 4-43 (479)
243 TIGR02374 nitri_red_nirB nitri 98.4 2.3E-06 4.9E-11 102.7 14.8 126 219-426 140-278 (785)
244 TIGR01372 soxA sarcosine oxida 98.4 2.4E-06 5.2E-11 104.9 15.0 39 218-256 162-200 (985)
245 COG2072 TrkA Predicted flavopr 98.4 2.4E-06 5.3E-11 95.7 13.8 135 217-397 6-144 (443)
246 PLN02927 antheraxanthin epoxid 98.4 1.6E-06 3.4E-11 100.7 12.5 36 217-252 79-114 (668)
247 PLN02546 glutathione reductase 98.4 1.6E-06 3.5E-11 99.7 12.4 33 218-250 78-110 (558)
248 PRK07845 flavoprotein disulfid 98.4 1.5E-06 3.2E-11 98.5 12.0 36 220-256 2-37 (466)
249 PRK07846 mycothione reductase; 98.4 2.1E-06 4.6E-11 96.7 13.2 99 219-399 166-264 (451)
250 COG3573 Predicted oxidoreducta 98.4 4E-06 8.7E-11 86.6 13.7 181 219-399 5-230 (552)
251 TIGR01438 TGR thioredoxin and 98.4 2E-06 4.4E-11 97.6 12.8 102 219-399 180-281 (484)
252 PTZ00052 thioredoxin reductase 98.4 1.1E-06 2.3E-11 100.4 10.5 33 219-251 5-37 (499)
253 PRK06327 dihydrolipoamide dehy 98.4 1.5E-06 3.3E-11 98.6 11.7 32 219-250 4-35 (475)
254 PLN02546 glutathione reductase 98.4 2.3E-06 5.1E-11 98.4 13.1 128 219-426 252-394 (558)
255 TIGR01423 trypano_reduc trypan 98.4 1.6E-06 3.4E-11 98.5 11.2 34 218-251 2-36 (486)
256 PTZ00052 thioredoxin reductase 98.4 2.6E-06 5.6E-11 97.2 12.9 123 219-423 182-318 (499)
257 PRK08010 pyridine nucleotide-d 98.4 3.6E-06 7.9E-11 94.6 13.8 38 219-256 3-41 (441)
258 PF13454 NAD_binding_9: FAD-NA 98.4 5.6E-06 1.2E-10 79.4 13.0 145 223-395 1-155 (156)
259 PRK07818 dihydrolipoamide dehy 98.4 2.5E-06 5.4E-11 96.6 12.4 37 219-256 4-40 (466)
260 PRK06292 dihydrolipoamide dehy 98.4 2.6E-06 5.7E-11 96.3 12.4 100 219-399 169-270 (460)
261 COG1902 NemA NADH:flavin oxido 98.4 2E-07 4.3E-12 100.7 3.1 118 39-170 220-351 (363)
262 TIGR03452 mycothione_red mycot 98.4 3.3E-06 7.1E-11 95.2 13.0 99 219-399 169-267 (452)
263 KOG2852 Possible oxidoreductas 98.4 9.6E-07 2.1E-11 89.6 7.6 178 217-399 8-210 (380)
264 PRK02106 choline dehydrogenase 98.4 6.6E-06 1.4E-10 95.4 15.7 56 338-397 207-262 (560)
265 PRK09564 coenzyme A disulfide 98.3 2.2E-06 4.7E-11 96.5 11.4 113 220-397 1-115 (444)
266 TIGR03385 CoA_CoA_reduc CoA-di 98.3 8E-06 1.7E-10 91.4 15.8 99 219-399 137-235 (427)
267 PRK14694 putative mercuric red 98.3 5.4E-06 1.2E-10 93.9 14.4 39 217-256 4-42 (468)
268 PRK13512 coenzyme A disulfide 98.3 6.7E-06 1.4E-10 92.4 14.9 106 219-411 148-253 (438)
269 PTZ00058 glutathione reductase 98.3 4.4E-06 9.5E-11 96.1 13.2 100 219-398 237-337 (561)
270 PRK09754 phenylpropionate diox 98.3 2E-06 4.2E-11 95.4 9.9 35 219-253 3-39 (396)
271 TIGR03140 AhpF alkyl hydropero 98.3 6.3E-06 1.4E-10 94.5 14.3 100 219-399 352-452 (515)
272 TIGR02053 MerA mercuric reduct 98.3 2.6E-06 5.7E-11 96.3 11.0 36 220-256 1-36 (463)
273 TIGR01810 betA choline dehydro 98.3 1E-05 2.2E-10 93.2 15.8 57 336-396 198-254 (532)
274 TIGR01316 gltA glutamate synth 98.3 4E-06 8.6E-11 94.5 12.1 116 218-411 271-399 (449)
275 PRK08255 salicylyl-CoA 5-hydro 98.3 5.8E-06 1.3E-10 99.0 14.2 133 220-399 1-143 (765)
276 PTZ00363 rab-GDP dissociation 98.3 9.7E-06 2.1E-10 90.6 14.9 58 332-397 232-290 (443)
277 TIGR03378 glycerol3P_GlpB glyc 98.3 1.8E-05 3.9E-10 87.0 16.5 62 333-400 264-326 (419)
278 PRK13512 coenzyme A disulfide 98.3 4.5E-06 9.7E-11 93.8 11.8 35 220-254 2-38 (438)
279 PRK14727 putative mercuric red 98.3 3.7E-06 8.1E-11 95.5 11.2 39 219-257 16-54 (479)
280 PRK06912 acoL dihydrolipoamide 98.3 5.1E-06 1.1E-10 93.9 11.6 32 221-252 2-33 (458)
281 TIGR02731 phytoene_desat phyto 98.2 1.3E-05 2.9E-10 90.4 14.7 61 332-395 213-274 (453)
282 TIGR01789 lycopene_cycl lycope 98.2 8.3E-06 1.8E-10 89.5 12.7 35 221-255 1-37 (370)
283 COG1252 Ndh NADH dehydrogenase 98.2 5.2E-06 1.1E-10 90.6 10.9 100 220-403 156-268 (405)
284 PRK13748 putative mercuric red 98.2 9.5E-06 2.1E-10 94.1 13.8 38 219-257 98-135 (561)
285 PRK12770 putative glutamate sy 98.2 1.7E-06 3.6E-11 94.4 7.0 39 217-255 16-54 (352)
286 COG1249 Lpd Pyruvate/2-oxoglut 98.2 6.8E-06 1.5E-10 91.7 11.7 41 218-258 3-43 (454)
287 PLN02612 phytoene desaturase 98.2 2.4E-05 5.1E-10 90.7 16.6 55 333-395 309-364 (567)
288 TIGR01438 TGR thioredoxin and 98.2 5.7E-06 1.2E-10 94.0 11.1 33 219-251 2-34 (484)
289 KOG0042 Glycerol-3-phosphate d 98.2 1.9E-06 4.1E-11 94.2 6.8 78 326-406 218-296 (680)
290 PF04820 Trp_halogenase: Trypt 98.2 1.2E-05 2.6E-10 90.5 13.2 57 332-397 154-211 (454)
291 PLN02487 zeta-carotene desatur 98.2 2.2E-05 4.8E-10 90.3 15.5 60 333-397 296-360 (569)
292 PRK06292 dihydrolipoamide dehy 98.2 6.3E-06 1.4E-10 93.1 10.7 37 219-256 3-39 (460)
293 PF06039 Mqo: Malate:quinone o 98.2 5.2E-05 1.1E-09 82.9 17.0 74 331-410 180-254 (488)
294 TIGR01292 TRX_reduct thioredox 98.2 2.2E-05 4.7E-10 83.0 13.5 99 219-399 141-240 (300)
295 TIGR02732 zeta_caro_desat caro 98.1 6.3E-05 1.4E-09 85.4 17.3 59 334-397 221-284 (474)
296 COG0446 HcaD Uncharacterized N 98.1 1.9E-05 4.1E-10 87.3 12.8 101 219-398 136-238 (415)
297 PF13450 NAD_binding_8: NAD(P) 98.1 3.2E-06 6.9E-11 69.1 4.8 35 224-258 1-35 (68)
298 PRK10262 thioredoxin reductase 98.1 2.4E-05 5.1E-10 84.1 12.9 105 219-399 146-250 (321)
299 PRK13523 NADPH dehydrogenase N 98.1 9.5E-07 2.1E-11 95.2 2.0 104 39-151 211-325 (337)
300 KOG2614 Kynurenine 3-monooxyge 98.1 9.3E-06 2E-10 87.0 9.1 38 219-256 2-39 (420)
301 PTZ00153 lipoamide dehydrogena 98.1 2.3E-05 5E-10 91.6 13.0 109 219-399 312-429 (659)
302 PLN02529 lysine-specific histo 98.1 3.2E-06 7E-11 99.3 5.9 56 191-258 144-199 (738)
303 KOG2853 Possible oxidoreductas 98.1 3.8E-05 8.2E-10 79.8 12.7 180 219-404 86-327 (509)
304 PRK04965 NADH:flavorubredoxin 98.1 2.3E-05 4.9E-10 86.3 12.1 106 220-397 3-111 (377)
305 PTZ00318 NADH dehydrogenase-li 98.1 4.2E-05 9.1E-10 85.6 13.9 95 220-399 174-282 (424)
306 PTZ00153 lipoamide dehydrogena 98.1 2.3E-05 4.9E-10 91.6 12.0 40 218-257 115-155 (659)
307 PRK12831 putative oxidoreducta 98.1 3E-05 6.4E-10 87.7 12.5 107 217-399 279-398 (464)
308 PRK12810 gltD glutamate syntha 98.0 2.2E-05 4.7E-10 89.1 11.0 115 218-398 280-401 (471)
309 COG1232 HemY Protoporphyrinoge 98.0 5.1E-05 1.1E-09 84.1 13.4 38 220-257 1-40 (444)
310 PRK15317 alkyl hydroperoxide r 98.0 3.4E-05 7.3E-10 88.6 12.5 100 218-398 350-450 (517)
311 TIGR02374 nitri_red_nirB nitri 98.0 1.8E-05 3.9E-10 95.1 10.2 106 222-398 1-109 (785)
312 cd04735 OYE_like_4_FMN Old yel 98.0 1.6E-06 3.4E-11 94.4 1.1 112 39-166 219-342 (353)
313 TIGR03377 glycerol3P_GlpA glyc 98.0 5.9E-05 1.3E-09 86.6 14.0 72 330-404 126-197 (516)
314 COG3634 AhpF Alkyl hydroperoxi 98.0 9.5E-06 2.1E-10 84.3 6.5 118 215-398 207-326 (520)
315 TIGR03169 Nterm_to_SelD pyridi 98.0 3E-05 6.6E-10 84.8 10.5 105 221-398 1-108 (364)
316 PRK11749 dihydropyrimidine deh 98.0 3.5E-05 7.5E-10 87.1 11.2 106 218-399 272-389 (457)
317 cd04733 OYE_like_2_FMN Old yel 98.0 4.4E-06 9.5E-11 90.5 3.5 108 39-147 220-338 (338)
318 PRK14989 nitrite reductase sub 97.9 4.7E-05 1E-09 91.8 12.0 107 220-398 4-114 (847)
319 PRK12770 putative glutamate sy 97.9 5.1E-05 1.1E-09 82.7 11.3 104 219-399 172-288 (352)
320 PRK07846 mycothione reductase; 97.9 4.7E-05 1E-09 85.8 11.1 34 220-256 2-35 (451)
321 PF00724 Oxidored_FMN: NADH:fl 97.9 1.5E-06 3.2E-11 94.2 -1.1 110 39-150 220-340 (341)
322 PTZ00318 NADH dehydrogenase-li 97.9 4.2E-05 9E-10 85.6 10.5 36 218-253 9-44 (424)
323 KOG1336 Monodehydroascorbate/f 97.9 7.2E-05 1.6E-09 81.6 10.7 132 219-429 213-357 (478)
324 TIGR03452 mycothione_red mycot 97.9 6.4E-05 1.4E-09 84.8 10.7 53 625-681 276-328 (452)
325 COG3075 GlpB Anaerobic glycero 97.8 0.00033 7.1E-09 72.9 14.3 58 334-397 260-317 (421)
326 PLN02785 Protein HOTHEAD 97.8 0.00021 4.5E-09 83.0 14.3 36 217-253 53-88 (587)
327 PF13434 K_oxygenase: L-lysine 97.8 1.7E-05 3.8E-10 85.8 4.7 153 219-397 2-159 (341)
328 TIGR02462 pyranose_ox pyranose 97.8 0.00024 5.2E-09 81.1 14.1 36 220-255 1-36 (544)
329 cd02933 OYE_like_FMN Old yello 97.8 7.8E-06 1.7E-10 88.3 1.5 87 50-149 238-332 (338)
330 cd04747 OYE_like_5_FMN Old yel 97.8 7.5E-06 1.6E-10 88.9 1.4 91 49-151 231-348 (361)
331 PRK12769 putative oxidoreducta 97.8 0.00012 2.7E-09 86.4 11.7 105 218-398 467-585 (654)
332 TIGR02352 thiamin_ThiO glycine 97.8 5.8E-05 1.2E-09 81.2 8.1 63 328-399 133-195 (337)
333 PRK12778 putative bifunctional 97.8 0.00018 3.9E-09 86.4 12.6 106 218-399 569-688 (752)
334 KOG0405 Pyridine nucleotide-di 97.7 8E-05 1.7E-09 77.7 8.1 115 218-412 188-302 (478)
335 COG1148 HdrA Heterodisulfide r 97.7 5.7E-05 1.2E-09 82.0 7.3 41 217-257 122-162 (622)
336 KOG0029 Amine oxidase [Seconda 97.7 3.2E-05 6.9E-10 87.5 5.5 42 217-258 13-54 (501)
337 KOG2665 Predicted FAD-dependen 97.7 0.00027 5.8E-09 73.0 10.9 188 217-413 46-270 (453)
338 COG4529 Uncharacterized protei 97.7 0.00054 1.2E-08 75.4 13.5 37 220-256 2-41 (474)
339 PLN02411 12-oxophytodienoate r 97.7 1.6E-05 3.5E-10 87.4 1.7 80 66-149 273-360 (391)
340 COG2303 BetA Choline dehydroge 97.6 0.00082 1.8E-08 77.5 15.4 60 337-398 208-267 (542)
341 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00051 1.1E-08 75.1 13.1 53 334-399 193-245 (364)
342 PRK11883 protoporphyrinogen ox 97.6 4.7E-05 1E-09 85.6 5.0 39 220-258 1-41 (451)
343 COG3349 Uncharacterized conser 97.6 4.8E-05 1E-09 84.2 4.8 39 220-258 1-39 (485)
344 COG1251 NirB NAD(P)H-nitrite r 97.6 8.8E-05 1.9E-09 84.6 6.9 113 218-412 144-256 (793)
345 PRK10605 N-ethylmaleimide redu 97.6 2.7E-05 5.9E-10 84.8 2.6 89 47-149 242-339 (362)
346 KOG1800 Ferredoxin/adrenodoxin 97.6 8.5E-05 1.8E-09 78.5 6.0 99 219-398 20-121 (468)
347 KOG2960 Protein involved in th 97.6 0.00012 2.6E-09 71.4 6.2 146 219-398 76-235 (328)
348 PRK12779 putative bifunctional 97.6 0.00057 1.2E-08 83.4 13.1 145 218-439 446-619 (944)
349 TIGR01372 soxA sarcosine oxida 97.5 0.0012 2.6E-08 81.5 15.4 96 219-399 317-413 (985)
350 PRK09853 putative selenate red 97.5 0.00077 1.7E-08 81.5 13.0 148 218-444 667-839 (1019)
351 PLN02576 protoporphyrinogen ox 97.5 0.00011 2.3E-09 84.0 5.6 41 218-258 11-52 (496)
352 PRK12814 putative NADPH-depend 97.5 0.00063 1.4E-08 80.3 11.8 35 218-252 322-357 (652)
353 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.00069 1.5E-08 74.6 11.4 64 327-400 130-193 (381)
354 PLN02268 probable polyamine ox 97.5 0.00011 2.4E-09 82.4 5.1 39 220-258 1-39 (435)
355 TIGR00562 proto_IX_ox protopor 97.4 0.00013 2.9E-09 82.4 5.1 40 219-258 2-45 (462)
356 TIGR03143 AhpF_homolog putativ 97.4 0.001 2.2E-08 77.1 12.4 36 218-253 142-177 (555)
357 KOG4716 Thioredoxin reductase 97.4 0.00026 5.6E-09 73.7 6.4 115 207-398 187-301 (503)
358 COG0492 TrxB Thioredoxin reduc 97.4 0.0018 3.9E-08 68.9 13.0 97 219-399 143-240 (305)
359 PRK12809 putative oxidoreducta 97.4 0.00073 1.6E-08 79.6 11.1 117 218-411 450-580 (639)
360 PF06100 Strep_67kDa_ant: Stre 97.4 0.0024 5.2E-08 70.8 14.1 65 329-396 204-273 (500)
361 PLN02328 lysine-specific histo 97.4 0.00022 4.8E-09 84.6 6.5 44 215-258 234-277 (808)
362 COG1252 Ndh NADH dehydrogenase 97.3 0.00078 1.7E-08 73.8 9.6 107 219-398 3-112 (405)
363 KOG4716 Thioredoxin reductase 97.3 0.0041 8.8E-08 65.0 14.1 38 215-252 15-52 (503)
364 COG3634 AhpF Alkyl hydroperoxi 97.3 0.0013 2.7E-08 69.0 10.4 102 217-399 352-454 (520)
365 TIGR03315 Se_ygfK putative sel 97.3 0.0017 3.6E-08 79.0 13.0 145 218-442 665-835 (1012)
366 PRK12775 putative trifunctiona 97.3 0.0019 4.2E-08 79.5 13.4 106 218-399 570-688 (1006)
367 PRK12416 protoporphyrinogen ox 97.3 0.00021 4.6E-09 80.8 4.8 39 220-258 2-46 (463)
368 TIGR01318 gltD_gamma_fam gluta 97.3 0.0019 4.2E-08 73.2 12.1 104 218-397 281-398 (467)
369 PRK01438 murD UDP-N-acetylmura 97.3 0.0012 2.5E-08 75.2 10.2 34 219-252 16-49 (480)
370 PF13434 K_oxygenase: L-lysine 97.2 0.0012 2.5E-08 71.7 9.0 142 217-394 188-338 (341)
371 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00039 8.5E-09 76.1 5.2 38 220-257 2-39 (377)
372 TIGR01317 GOGAT_sm_gam glutama 97.2 0.0039 8.4E-08 71.1 13.5 36 218-253 282-318 (485)
373 cd02803 OYE_like_FMN_family Ol 97.2 0.00024 5.2E-09 76.6 3.4 95 48-146 223-326 (327)
374 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00016 3.4E-09 86.9 1.6 97 44-148 629-734 (765)
375 COG2907 Predicted NAD/FAD-bind 97.1 0.00038 8.2E-09 73.0 4.0 42 218-260 7-48 (447)
376 cd02932 OYE_YqiM_FMN Old yello 97.1 0.00023 4.9E-09 77.1 2.0 90 48-145 236-334 (336)
377 PRK05329 anaerobic glycerol-3- 97.0 0.003 6.6E-08 70.3 10.3 59 334-398 261-319 (422)
378 PLN02568 polyamine oxidase 97.0 0.0008 1.7E-08 77.4 5.4 40 219-258 5-49 (539)
379 COG1231 Monoamine oxidase [Ami 97.0 0.00089 1.9E-08 73.1 5.2 42 218-259 6-47 (450)
380 PLN02676 polyamine oxidase 96.9 0.0012 2.5E-08 75.3 5.4 41 218-258 25-66 (487)
381 PRK12771 putative glutamate sy 96.9 0.008 1.7E-07 69.9 12.4 105 218-398 266-381 (564)
382 PRK13984 putative oxidoreducta 96.8 0.0098 2.1E-07 69.7 12.5 55 343-397 473-538 (604)
383 PRK05329 anaerobic glycerol-3- 96.8 0.0049 1.1E-07 68.7 9.0 34 219-252 2-35 (422)
384 COG0562 Glf UDP-galactopyranos 96.7 0.002 4.4E-08 67.1 5.1 39 220-258 2-40 (374)
385 KOG2495 NADH-dehydrogenase (ub 96.7 0.006 1.3E-07 65.9 8.4 60 334-402 275-334 (491)
386 KOG1276 Protoporphyrinogen oxi 96.6 0.0051 1.1E-07 66.5 7.8 42 217-258 9-52 (491)
387 KOG0405 Pyridine nucleotide-di 96.6 0.02 4.3E-07 60.3 11.4 41 217-257 18-58 (478)
388 KOG0685 Flavin-containing amin 96.5 0.0027 5.9E-08 69.5 5.0 41 219-259 21-62 (498)
389 PLN03000 amine oxidase 96.5 0.0033 7.1E-08 75.0 5.7 41 218-258 183-223 (881)
390 PLN02976 amine oxidase 96.4 0.0049 1.1E-07 76.1 6.4 44 215-258 689-732 (1713)
391 KOG1238 Glucose dehydrogenase/ 96.3 0.057 1.2E-06 61.7 14.0 39 216-254 54-93 (623)
392 KOG1336 Monodehydroascorbate/f 96.3 0.015 3.2E-07 63.9 8.6 106 219-397 74-181 (478)
393 PRK14106 murD UDP-N-acetylmura 96.0 0.025 5.3E-07 63.8 9.5 34 219-252 5-38 (450)
394 KOG0404 Thioredoxin reductase 96.0 0.04 8.7E-07 54.7 9.5 100 219-399 157-257 (322)
395 KOG3855 Monooxygenase involved 96.0 0.016 3.5E-07 62.5 6.9 57 334-398 152-218 (481)
396 PRK02705 murD UDP-N-acetylmura 95.7 0.035 7.5E-07 62.8 8.8 33 221-253 2-34 (459)
397 COG1251 NirB NAD(P)H-nitrite r 95.7 0.056 1.2E-06 62.5 10.2 108 219-397 3-113 (793)
398 COG3486 IucD Lysine/ornithine 95.7 0.059 1.3E-06 58.3 9.7 150 218-397 4-157 (436)
399 PLN02172 flavin-containing mon 95.4 0.023 4.9E-07 64.3 6.0 35 218-252 203-237 (461)
400 PLN02852 ferredoxin-NADP+ redu 95.3 0.21 4.4E-06 56.8 13.2 53 345-397 288-354 (491)
401 PF00996 GDI: GDP dissociation 95.3 0.52 1.1E-05 52.6 16.0 41 218-258 3-43 (438)
402 COG2509 Uncharacterized FAD-de 95.1 0.021 4.6E-07 62.4 4.3 73 219-292 18-97 (486)
403 KOG3923 D-aspartate oxidase [A 95.1 0.014 3.1E-07 60.3 2.6 34 219-252 3-43 (342)
404 PRK06567 putative bifunctional 94.7 0.17 3.6E-06 61.3 10.5 60 340-399 648-730 (1028)
405 KOG1346 Programmed cell death 94.6 0.089 1.9E-06 56.7 7.1 69 334-413 395-463 (659)
406 KOG2495 NADH-dehydrogenase (ub 94.1 0.38 8.2E-06 52.5 10.7 118 217-398 53-171 (491)
407 PRK10550 tRNA-dihydrouridine s 93.9 0.03 6.5E-07 59.9 1.9 84 52-146 147-239 (312)
408 KOG2755 Oxidoreductase [Genera 93.8 0.17 3.6E-06 51.7 6.9 34 221-254 1-36 (334)
409 PF00743 FMO-like: Flavin-bind 93.5 0.18 3.9E-06 58.0 7.6 35 218-252 182-216 (531)
410 PF01210 NAD_Gly3P_dh_N: NAD-d 93.3 0.071 1.5E-06 51.1 3.2 32 221-252 1-32 (157)
411 COG0446 HcaD Uncharacterized N 93.2 0.22 4.7E-06 54.8 7.6 44 343-398 64-107 (415)
412 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.084 1.8E-06 52.1 3.6 34 220-253 1-34 (185)
413 PRK07259 dihydroorotate dehydr 92.9 0.04 8.7E-07 58.7 1.0 97 53-149 169-281 (301)
414 PF02737 3HCDH_N: 3-hydroxyacy 92.7 0.13 2.8E-06 50.4 4.3 33 221-253 1-33 (180)
415 PF13738 Pyr_redox_3: Pyridine 92.7 0.12 2.7E-06 51.0 4.2 36 218-253 166-201 (203)
416 cd02801 DUS_like_FMN Dihydrour 92.5 0.085 1.8E-06 53.7 2.8 82 53-146 138-228 (231)
417 TIGR03385 CoA_CoA_reduc CoA-di 92.2 0.42 9.1E-06 53.5 8.1 49 342-398 54-104 (427)
418 PF01593 Amino_oxidase: Flavin 92.1 0.14 3.1E-06 56.2 4.1 50 338-396 215-264 (450)
419 PF02558 ApbA: Ketopantoate re 91.6 0.22 4.9E-06 46.9 4.3 31 222-252 1-31 (151)
420 TIGR01037 pyrD_sub1_fam dihydr 91.5 0.11 2.3E-06 55.5 2.2 99 51-149 167-281 (300)
421 PF13241 NAD_binding_7: Putati 91.4 0.17 3.8E-06 44.7 3.2 35 218-252 6-40 (103)
422 COG0569 TrkA K+ transport syst 91.3 0.25 5.4E-06 50.3 4.6 34 220-253 1-34 (225)
423 TIGR01470 cysG_Nterm siroheme 90.9 0.32 6.9E-06 48.8 4.8 34 219-252 9-42 (205)
424 PF01262 AlaDh_PNT_C: Alanine 90.7 0.34 7.3E-06 46.9 4.7 35 219-253 20-54 (168)
425 COG3486 IucD Lysine/ornithine 90.4 2.1 4.6E-05 46.7 10.6 61 333-396 276-339 (436)
426 PF01488 Shikimate_DH: Shikima 90.2 0.51 1.1E-05 43.9 5.2 35 218-252 11-46 (135)
427 PRK06719 precorrin-2 dehydroge 90.2 0.41 8.8E-06 45.9 4.7 32 218-249 12-43 (157)
428 PRK06129 3-hydroxyacyl-CoA deh 90.0 0.34 7.4E-06 51.8 4.4 34 220-253 3-36 (308)
429 PRK09260 3-hydroxybutyryl-CoA 89.6 0.4 8.7E-06 50.7 4.5 34 220-253 2-35 (288)
430 PF14691 Fer4_20: Dihydroprymi 89.6 0.1 2.3E-06 46.8 0.1 62 110-189 35-97 (111)
431 PRK08293 3-hydroxybutyryl-CoA 89.6 0.41 8.9E-06 50.6 4.6 34 220-253 4-37 (287)
432 PRK07819 3-hydroxybutyryl-CoA 89.4 0.42 9.1E-06 50.6 4.5 35 220-254 6-40 (286)
433 PRK06718 precorrin-2 dehydroge 89.4 0.5 1.1E-05 47.2 4.8 33 219-251 10-42 (202)
434 PRK07066 3-hydroxybutyryl-CoA 89.3 0.53 1.1E-05 50.6 5.2 35 219-253 7-41 (321)
435 PRK06249 2-dehydropantoate 2-r 89.3 0.55 1.2E-05 50.3 5.4 34 219-252 5-38 (313)
436 COG1004 Ugd Predicted UDP-gluc 89.2 0.45 9.7E-06 51.7 4.4 34 220-253 1-34 (414)
437 cd02810 DHOD_DHPD_FMN Dihydroo 89.1 0.27 5.8E-06 52.0 2.7 96 50-145 173-287 (289)
438 KOG3851 Sulfide:quinone oxidor 89.0 0.46 9.9E-06 49.9 4.2 37 217-253 37-75 (446)
439 PRK05708 2-dehydropantoate 2-r 89.0 0.56 1.2E-05 50.1 5.1 33 220-252 3-35 (305)
440 COG3573 Predicted oxidoreducta 88.7 0.065 1.4E-06 56.2 -2.2 52 623-680 487-550 (552)
441 PRK04148 hypothetical protein; 88.6 0.52 1.1E-05 43.7 3.9 35 218-253 16-50 (134)
442 TIGR00737 nifR3_yhdG putative 88.5 0.57 1.2E-05 50.4 4.8 80 53-144 147-235 (319)
443 PRK07530 3-hydroxybutyryl-CoA 88.5 0.55 1.2E-05 49.7 4.6 34 220-253 5-38 (292)
444 PRK12921 2-dehydropantoate 2-r 88.3 0.58 1.3E-05 49.7 4.7 30 221-250 2-31 (305)
445 PRK06522 2-dehydropantoate 2-r 88.1 0.62 1.3E-05 49.3 4.7 32 221-252 2-33 (304)
446 PRK06035 3-hydroxyacyl-CoA deh 87.8 0.62 1.3E-05 49.3 4.5 34 220-253 4-37 (291)
447 PRK09424 pntA NAD(P) transhydr 87.2 0.71 1.5E-05 52.6 4.7 36 218-253 164-199 (509)
448 TIGR02354 thiF_fam2 thiamine b 87.2 0.8 1.7E-05 45.7 4.6 34 219-252 21-55 (200)
449 TIGR00518 alaDH alanine dehydr 87.1 0.79 1.7E-05 50.4 4.9 34 219-252 167-200 (370)
450 COG0686 Ald Alanine dehydrogen 87.0 0.65 1.4E-05 48.7 3.8 37 217-253 166-202 (371)
451 TIGR03467 HpnE squalene-associ 86.9 1.4 3E-05 48.7 6.9 54 335-396 200-253 (419)
452 cd00401 AdoHcyase S-adenosyl-L 86.9 0.84 1.8E-05 50.6 5.0 36 218-253 201-236 (413)
453 PF00899 ThiF: ThiF family; I 86.2 0.89 1.9E-05 42.1 4.1 35 219-253 2-37 (135)
454 PRK05808 3-hydroxybutyryl-CoA 86.0 0.91 2E-05 47.8 4.5 34 220-253 4-37 (282)
455 PRK08229 2-dehydropantoate 2-r 85.7 0.96 2.1E-05 48.9 4.7 33 220-252 3-35 (341)
456 PRK15116 sulfur acceptor prote 85.4 1.2 2.6E-05 46.5 5.0 35 219-253 30-65 (268)
457 PRK11064 wecC UDP-N-acetyl-D-m 85.4 0.91 2E-05 50.7 4.4 34 220-253 4-37 (415)
458 cd04740 DHOD_1B_like Dihydroor 85.3 0.27 5.8E-06 52.3 0.1 96 53-149 166-278 (296)
459 cd05292 LDH_2 A subgroup of L- 85.0 1.2 2.5E-05 47.8 4.8 33 221-253 2-36 (308)
460 PRK02472 murD UDP-N-acetylmura 84.7 1.1 2.4E-05 50.5 4.7 34 219-252 5-38 (447)
461 TIGR03026 NDP-sugDHase nucleot 84.4 1.1 2.3E-05 50.1 4.3 33 221-253 2-34 (411)
462 cd01075 NAD_bind_Leu_Phe_Val_D 84.3 1.4 3.1E-05 43.9 4.7 35 218-252 27-61 (200)
463 PRK14619 NAD(P)H-dependent gly 84.1 1.5 3.3E-05 46.8 5.2 34 219-252 4-37 (308)
464 PRK06130 3-hydroxybutyryl-CoA 84.1 1.4 3E-05 47.1 5.0 34 220-253 5-38 (311)
465 PRK10415 tRNA-dihydrouridine s 84.1 1.3 2.8E-05 47.6 4.7 75 54-140 150-233 (321)
466 TIGR02734 crtI_fam phytoene de 84.0 0.95 2.1E-05 51.8 3.9 37 222-258 1-37 (502)
467 TIGR01763 MalateDH_bact malate 83.9 1.4 3E-05 47.1 4.8 33 220-252 2-35 (305)
468 PRK12549 shikimate 5-dehydroge 83.8 1.4 2.9E-05 46.6 4.6 34 219-252 127-161 (284)
469 COG0493 GltD NADPH-dependent g 83.8 1.8 4E-05 48.7 5.9 35 215-249 258-293 (457)
470 PRK12475 thiamine/molybdopteri 83.4 1.5 3.2E-05 47.6 4.8 34 219-252 24-58 (338)
471 PRK04308 murD UDP-N-acetylmura 83.3 1.5 3.2E-05 49.4 5.0 35 219-253 5-39 (445)
472 PLN02545 3-hydroxybutyryl-CoA 83.2 1.4 3.1E-05 46.7 4.5 34 220-253 5-38 (295)
473 KOG1335 Dihydrolipoamide dehyd 83.1 0.71 1.5E-05 49.7 2.1 40 218-257 210-249 (506)
474 PRK08306 dipicolinate synthase 83.1 1.7 3.6E-05 46.3 4.9 35 219-253 152-186 (296)
475 TIGR02730 carot_isom carotene 83.0 0.95 2.1E-05 51.7 3.3 39 220-258 1-39 (493)
476 PRK00094 gpsA NAD(P)H-dependen 83.0 1.5 3.3E-05 46.8 4.8 34 220-253 2-35 (325)
477 PRK14620 NAD(P)H-dependent gly 83.0 1.5 3.2E-05 47.2 4.6 32 221-252 2-33 (326)
478 PRK14618 NAD(P)H-dependent gly 83.0 1.6 3.5E-05 47.0 4.9 35 219-253 4-38 (328)
479 TIGR02853 spore_dpaA dipicolin 82.7 1.7 3.6E-05 46.0 4.8 36 218-253 150-185 (287)
480 TIGR02356 adenyl_thiF thiazole 82.6 1.8 4E-05 43.2 4.8 35 219-253 21-56 (202)
481 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.5 1.5 3.2E-05 50.3 4.5 36 219-254 5-40 (503)
482 TIGR00936 ahcY adenosylhomocys 82.4 1.7 3.8E-05 48.1 4.9 36 218-253 194-229 (406)
483 COG1748 LYS9 Saccharopine dehy 82.0 1.8 3.9E-05 47.5 4.7 34 220-253 2-36 (389)
484 PF02254 TrkA_N: TrkA-N domain 82.0 2.2 4.8E-05 38.0 4.6 32 222-253 1-32 (116)
485 cd05311 NAD_bind_2_malic_enz N 81.7 2 4.3E-05 43.7 4.8 35 219-253 25-62 (226)
486 PRK07688 thiamine/molybdopteri 81.7 2 4.4E-05 46.5 5.0 34 219-252 24-58 (339)
487 PRK01710 murD UDP-N-acetylmura 81.6 1.7 3.6E-05 49.3 4.6 35 219-253 14-48 (458)
488 PRK03369 murD UDP-N-acetylmura 81.6 1.7 3.7E-05 49.6 4.6 33 219-251 12-44 (488)
489 PF00670 AdoHcyase_NAD: S-aden 81.6 2 4.4E-05 41.2 4.4 35 219-253 23-57 (162)
490 PRK12548 shikimate 5-dehydroge 81.5 2.1 4.6E-05 45.3 5.0 34 219-252 126-160 (289)
491 cd01078 NAD_bind_H4MPT_DH NADP 81.5 2.1 4.6E-05 42.2 4.8 34 219-252 28-62 (194)
492 cd05291 HicDH_like L-2-hydroxy 81.5 2 4.2E-05 45.9 4.8 33 221-253 2-36 (306)
493 cd01080 NAD_bind_m-THF_DH_Cycl 81.3 2.4 5.1E-05 41.1 4.8 34 218-251 43-77 (168)
494 PF03446 NAD_binding_2: NAD bi 81.3 2 4.4E-05 41.2 4.4 34 220-253 2-35 (163)
495 PRK11730 fadB multifunctional 81.1 1.8 4E-05 51.8 4.9 36 219-254 313-348 (715)
496 TIGR00561 pntA NAD(P) transhyd 81.1 2 4.3E-05 49.0 4.8 35 219-253 164-198 (511)
497 TIGR02437 FadB fatty oxidation 80.9 1.9 4.1E-05 51.6 4.9 37 218-254 312-348 (714)
498 TIGR02355 moeB molybdopterin s 80.8 2.3 5E-05 43.7 4.9 35 219-253 24-59 (240)
499 cd01487 E1_ThiF_like E1_ThiF_l 80.8 2.4 5.3E-05 41.2 4.8 33 221-253 1-34 (174)
500 COG2072 TrkA Predicted flavopr 80.7 1.8 3.9E-05 48.8 4.4 37 218-254 174-210 (443)
No 1
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=6.1e-63 Score=519.99 Aligned_cols=478 Identities=34% Similarity=0.533 Sum_probs=395.3
Q ss_pred ecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCCCChhhHHHHHhcccccccccCCCeEEEEEEEeeccccccCCchh
Q 005273 80 SKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVASMLPAEAFTVVRKSFDARKVLKEPKFVYTVDMDVSKLLDLEPRTW 159 (704)
Q Consensus 80 ~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~~~p~~a~~i~~~~~DaR~~ladp~~~~kv~~~~~~~~~~~~~~~ 159 (704)
+++++|++++. ..+..++-+.+.+... |.-.+.+++.+.|+| + .+..++|.++.+...+
T Consensus 1 ~~i~~~~~~~~--------~~~~~~~~~vvivgag---~~g~f~a~~~s~~ar-~-~~~~~i~~vd~g~~~~-------- 59 (486)
T COG2509 1 SEIKLPIDHDQ--------EALMNAALDVVIVGAG---PAGLFAAYELSGDAR-K-VPILKIYVVDVGLDIE-------- 59 (486)
T ss_pred CcccccCCCCh--------HHHhhhccceEEECCC---chHHHHHHHHhhhcc-c-CCceEEEEEEeccchh--------
Confidence 46788888775 4555556666666655 444789999999999 5 6899999999997643
Q ss_pred hhhhccccccccccccccccccCCceeeecccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHH
Q 005273 160 DFISRLEAKVGSVEHMLDKRASGDLINIIHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLA 239 (704)
Q Consensus 160 ~~i~~~~~~~~~~e~~~~~~~~~~~v~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~ 239 (704)
.|.||... .+.+ .|. .-....+++|-|+||+.++..|+
T Consensus 60 ---~r~~~~~~------------~~~~---~c~------------------------~~~~~~I~~G~GgaG~fs~g~ln 97 (486)
T COG2509 60 ---QRLCPKDE------------KKLE---KCP------------------------KCDPCPIVIGFGGAGLFSDGILN 97 (486)
T ss_pred ---hhhccccc------------cchh---hcC------------------------CCCCceeEeccccccccccccee
Confidence 23444211 0110 010 01245789999999999999888
Q ss_pred HcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCchhHHHHHHHHHHcCCCceee
Q 005273 240 ELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANIL 319 (704)
Q Consensus 240 ~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~ 319 (704)
++.. ++..+..+..+...+|....++..+|++||++|+++|++ +...+.+ ..+..+|++.+++
T Consensus 98 ---l~P~---~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~--~~e~ikd---------~e~~aa~a~~eil 160 (486)
T COG2509 98 ---LRPI---RGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSD--LTEQIKD---------IEFRAAGAGEEIL 160 (486)
T ss_pred ---cccc---cccchhhhhCChHHHHHHHhccchhheecCCCcCcccCC--chhhhhH---------HHHHHhCCCceee
Confidence 3332 565565566677788888888999999999999999987 3333322 3577899999999
Q ss_pred cCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 320 VDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 320 ~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+..++|+|++.+..+++.+++.++++|++|+|+|+|.++..+++.+.+|.+.++ .++.+|.||+|.|+++++
T Consensus 161 ~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--------~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 161 PIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--------EEIEADYVVLAPGRSGRD 232 (486)
T ss_pred eccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--------cEEecCEEEEccCcchHH
Confidence 999999999999999999999999999999999999999999998889998877 479999999999999999
Q ss_pred HHHHHHhC-CCcccccceeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCCCCCccccchhhhh
Q 005273 400 IYEMLVSH-NINLVPKDFAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCY 478 (704)
Q Consensus 400 ~~~~l~~~-gi~l~~~~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~ 478 (704)
|+.++.+. |+.+.++|+++|+|++||+.+|+...- +..++|.+++.. ...|.+|
T Consensus 233 w~~~l~~K~Gv~~~~~p~dIGVRvE~p~~vmd~~~~-------------~~~~~k~~~~t~------------k~~~~Vr 287 (486)
T COG2509 233 WFEMLHKKLGVKMRAKPFDIGVRVEHPQSVMDPHTR-------------LGAAPKFLYYTK------------KYGDGVR 287 (486)
T ss_pred HHHHHHHhcCcccccCCeeEEEEEecchHhhCcccc-------------ccccceeEEEec------------cCCCeEE
Confidence 99877655 999999999999999999999987431 122345555433 2467899
Q ss_pred hhhccCCceEEEccCCCCcceecCcccccCCCccccceeEEeeecCCcCcccCCCCchhhHHHHHHHHHHHHhCCCceee
Q 005273 479 SFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRWANAALVVTVSAKDFDTLDLHGPLAGVKFQREFEQRAAIMGGGNFVV 558 (704)
Q Consensus 479 ~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~~n~~~~~~v~~~d~~p~~~~~~l~g~~~~~~~e~~a~~~gg~~~~~ 558 (704)
+|||||+|.|+...|+.+.+.+||||++.++++|+|+++++.++..| |+++ +++||++|+++++.+||++ +
T Consensus 288 tFCmcP~G~VV~e~~e~g~~~vNG~S~~~r~s~NtNfAllV~i~~te--p~~~-----~~ey~r~ia~lA~~lgGg~--~ 358 (486)
T COG2509 288 TFCMCPGGEVVAENYEDGFVVVNGHSYYARKSENTNFALLVTIEFTE--PFED-----GIEYGRSIARLATTLGGGK--A 358 (486)
T ss_pred EEEECCCCeEEeeeccCceEEEcccchhcccccCcceEEEEeccccC--CCCc-----hHHHHHHHHHHHHHhcCCc--c
Confidence 99999999999999999999999999999999999999999886654 4322 7999999999999999998 7
Q ss_pred ccccHHhhhcCCCCC-CCC----CCCcccCceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeEEEEEEeeecCc
Q 005273 559 PAQKVTDFLENKLSA-SPL----PPSSYRLGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGLLHGVETRTSCP 633 (704)
Q Consensus 559 p~q~l~dfl~~~~~~-~~l----~~~~~~~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~~~Gve~~~~~p 633 (704)
|.|++.||+.+|.+. ..+ ..+++.+ +++.||+..||..+++.|+++|++|++.+|||.++++++||||+++||
T Consensus 359 i~Q~~gDf~~gRrSt~~ri~~~~v~PTlk~-v~pgDls~~lP~~v~~~iiE~le~ldk~ipG~as~dtlLygvE~k~ys- 436 (486)
T COG2509 359 IIQRVGDFLKGRRSTWSRIGRVFVEPTLKP-VTPGDLSLALPDRVVEDLIEALENLDKVIPGVASDDTLLYGVETKFYS- 436 (486)
T ss_pred hHHHhhHHHcCCcChHHHhhcccccccccc-cccCchhhhCCHHHHHHHHHHHHHhhccCCCcccccceeeeeeeeeee-
Confidence 899999999999873 122 2234555 889999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCcCCeeEccccchhhHHHHHHHHHHHHHHHHHHhhcC
Q 005273 634 LQIPRNNETCESTSLKGLYPVGEGAGYAGGIVSAAADGMYAGFAVAKDFG 683 (704)
Q Consensus 634 ~~i~~~~~tles~~i~GLy~~GE~aG~~GGi~sA~~~G~~Aa~~i~~~~~ 683 (704)
+|+.+|.+ ++++++|||++||+||++|||++|+++|++||++|+.++.
T Consensus 437 ~ri~~d~~--~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 437 VRIKVDED--LSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eeEeeccc--ceeeecceEEccccccccchhHHHhhhhHHHHHHHHHHhc
Confidence 99999965 5579999999999999999999999999999999998764
No 2
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=100.00 E-value=4.2e-38 Score=344.38 Aligned_cols=380 Identities=23% Similarity=0.311 Sum_probs=232.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCccc-----ccCcchhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGT-----WSDGKLVTR 294 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~-----~sdg~l~~~ 294 (704)
|||+|||||||||+||+.|++.|++|+|+||++.+|.+-...+ +..||+......... ..+++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG--------~GrCN~tn~~~~~~~~~~~~~~~~~f~~~ 72 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITG--------NGRCNLTNLNIDPSEFLSGYGRNPKFLKS 72 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCG--------GGT-EEEETTSSGGGEECS-TBTTTCTHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecC--------CCCccccccccchhhHhhhcccchHHHHH
Confidence 6899999999999999999999999999999999875432222 233554442222111 124555544
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCC
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSK 374 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~ 374 (704)
.-... ...+++++|.+.|++.....+++.|+.++++..+++.|++.++++||+++++++|.+|..+++.+..|.+.+.
T Consensus 73 ~l~~f-~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~- 150 (409)
T PF03486_consen 73 ALKRF-SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG- 150 (409)
T ss_dssp HHHHS--HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT-
T ss_pred HHhcC-CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc-
Confidence 32222 3567889999999999988999999999999999999999999999999999999999999999889988433
Q ss_pred CCCCCceeEEecCeEEEcCCCCh-------HHHHHHHHhCCCccccc-ceeeEEEEecchhhhcccccccchhhhcccCC
Q 005273 375 DNSQSDIQKLGFDAVILAVGHSA-------RDIYEMLVSHNINLVPK-DFAVGLRMEHPQELINSIQYSELATEVQKGRG 446 (704)
Q Consensus 375 ~~~~~~~~~i~Ad~VVlAtG~~s-------~~~~~~l~~~gi~l~~~-~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g 446 (704)
..+.||.||+|+|+.+ .+.+.+++++|+++.+. |..+++.++.+..+....+...
T Consensus 151 -------~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~---------- 213 (409)
T PF03486_consen 151 -------GEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWLFFKELSGVR---------- 213 (409)
T ss_dssp -------EEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHHHTGGGTT-E----------
T ss_pred -------ccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhhhhhhhCCCc----------
Confidence 5899999999999754 46899999999999875 6678888876543223332110
Q ss_pred CCccccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEccCCCCcceecCcccccCCCcc--ccceeEEeeecC
Q 005273 447 KVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRW--ANAALVVTVSAK 524 (704)
Q Consensus 447 ~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~--~n~~~~~~v~~~ 524 (704)
+.. ... .+. .+.. ....|+++||+++.+|+++ |++|+...+. .+..... ..
T Consensus 214 ---~~~-~~~-~~~-------------~~~~----~~~~GellfT~~GiSGp~i--l~lS~~~~~~l~~~~~~~i---~i 266 (409)
T PF03486_consen 214 ---LKA-VIS-LLD-------------GKKK----ASETGELLFTHYGISGPAI--LQLSRFIARALNKKKKVEI---SI 266 (409)
T ss_dssp ---EEE-EEE-EE--------------ECTC----EEEEEEEEE-SSEEESHHH--HHHTTTHHHHHH--TTEEE---EE
T ss_pred ---eee-EEE-Eec-------------cCCc----cceeeeEEEECCccchHHH--HHHHHHHHHHHHhcCCceE---EE
Confidence 000 000 000 0001 2446899999999999999 4444332111 1233222 35
Q ss_pred CcCcccCCCCchhhHHHHHHHHHHHHhCCCceeeccccHHhhhcCCCCCC----CCCCCcc-cCceeEccCCccChHHHH
Q 005273 525 DFDTLDLHGPLAGVKFQREFEQRAAIMGGGNFVVPAQKVTDFLENKLSAS----PLPPSSY-RLGVKAASLHELFPTHLT 599 (704)
Q Consensus 525 d~~p~~~~~~l~g~~~~~~~e~~a~~~gg~~~~~p~q~l~dfl~~~~~~~----~l~~~~~-~~~~~~~~l~~~~p~~~~ 599 (704)
||.| .++..++.+.+.++....+ .+.+.++|.+.+... .+....+ .+... -..+.++..
T Consensus 267 d~~p-----~~~~e~l~~~l~~~~~~~~-------~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~----~~~l~~~~~ 330 (409)
T PF03486_consen 267 DFLP-----DLSEEELEELLQERKEKNP-------KRTLKNFLKGLLPKRLALALLKRAGIKDPDKK----VSELSKKER 330 (409)
T ss_dssp ESST-----TS-HHHHHHHHHHHHHHTT-------TSBHHHHHTTTS-HHHHHHHHHHTTS-STTSB----GGGS-HHHH
T ss_pred EeCC-----CCCHHHHHHHHHHHHHHHH-------hhHHHHHHHHHhHHHHHHHHHHHcCCCccccc----hhhcCHHHH
Confidence 7777 2444566666666554433 345666666544311 0000001 11111 133455677
Q ss_pred HHHHHHHHhhhhcC---CCCCCCCeEEEEEEeeecCceeccCCCCCccccCcCCeeEcccc---chhhHH--HHHHHHHH
Q 005273 600 DALKHSISMFDEEL---PGFISDTGLLHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEG---AGYAGG--IVSAAADG 671 (704)
Q Consensus 600 ~~l~~~l~~~~~~~---~G~~~~~a~~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~---aG~~GG--i~sA~~~G 671 (704)
..|.+.|++|.-.+ .||..++++.|||.+++ +|++||||+.+||||||||+ +|.||| ++|||++|
T Consensus 331 ~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~e-------id~~TmeSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG 403 (409)
T PF03486_consen 331 NRLANLLKRFPFTVTGTGGFDKAQVTAGGVDLKE-------IDPKTMESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSG 403 (409)
T ss_dssp HHHHHHHHCEEEEESEE--TTT-SEEEEEE-GGG-------B-TTT-BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHH
T ss_pred HHHHHHHHhCceeecccCCCceEEEECCCcCHHH-------CCHhhhcccCCCCeEEEEEEEEeccCcCchhHhHHHHHH
Confidence 88899999998544 57778899999999999 88899999999999999999 899999 78999999
Q ss_pred HHHHH
Q 005273 672 MYAGF 676 (704)
Q Consensus 672 ~~Aa~ 676 (704)
+.||+
T Consensus 404 ~~Ag~ 408 (409)
T PF03486_consen 404 YLAGK 408 (409)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99986
No 3
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=100.00 E-value=9.3e-36 Score=312.10 Aligned_cols=379 Identities=20% Similarity=0.268 Sum_probs=254.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccc-----cCcchhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTW-----SDGKLVT 293 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~-----sdg~l~~ 293 (704)
.+||+|||||||||+||..++++|++|+|||+++.+|.+-.-.++ ..||+..... ...| .++++..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGg--------GrCN~Tn~~~-~~~~ls~~p~~~~fl~ 73 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGG--------GRCNFTNSEA-PDEFLSRNPGNGHFLK 73 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCC--------CCcccccccc-HHHHHHhCCCcchHHH
Confidence 579999999999999999999999999999999998765332221 1233322111 0000 1112222
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCC
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDS 373 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~ 373 (704)
..-. .....+.++|+..+|++......|+.++-++++.++++.|.+++++.||+++++++|.++..++ ....+.+.++
T Consensus 74 sal~-~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~f~l~t~~g 151 (408)
T COG2081 74 SALA-RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SGFRLDTSSG 151 (408)
T ss_pred HHHH-hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ceEEEEcCCC
Confidence 1111 1124568889999999999999999999999999999999999999999999999999998876 3344555554
Q ss_pred CCCCCCceeEEecCeEEEcCCCCh-------HHHHHHHHhCCCccccc-ceeeEEEEecchhhhcccccccchhhhcccC
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSA-------RDIYEMLVSHNINLVPK-DFAVGLRMEHPQELINSIQYSELATEVQKGR 445 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s-------~~~~~~l~~~gi~l~~~-~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~ 445 (704)
.+++||.+|+|+|+.| ..+|.+++++|+++.+. |..+++.+..|. ++..+ |.
T Consensus 152 --------~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~--~~~l~----------gl 211 (408)
T COG2081 152 --------ETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESF--LERLA----------GL 211 (408)
T ss_pred --------CEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHH--HHHhc----------CC
Confidence 3799999999999644 36899999999999875 555776665442 23333 11
Q ss_pred CCCccccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEccCCCCcceecCcccccCCCccccceeEEeeecCC
Q 005273 446 GKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRWANAALVVTVSAKD 525 (704)
Q Consensus 446 g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~~n~~~~~~v~~~d 525 (704)
. ..+..+....+. + .+ -.|+++||+++++|+.+.-+|.+-+. ...+....+ ..|
T Consensus 212 s---~~~v~~~v~~~~--------------g-~~----~~g~~LfTh~GiSGPavl~~Ss~~~~-~~~~~~~~i---~iD 265 (408)
T COG2081 212 S---LKSVPLSVTAGK--------------G-IT----FQGDLLFTHRGLSGPAVLQLSSYWRL-LEKKGGATL---SID 265 (408)
T ss_pred c---ccceEEEEecCC--------------C-ce----eecceEEEecCCcHHHHHHHHHHHHH-hccCCCceE---EEe
Confidence 1 111111111100 0 11 23789999999999999666665443 222222223 256
Q ss_pred cCcccCCCCchhhHHHHHHHHHHHHhCCCceeeccccHHhhhcCCCCC----CCCCCCcccCceeEccCCccChHHHHHH
Q 005273 526 FDTLDLHGPLAGVKFQREFEQRAAIMGGGNFVVPAQKVTDFLENKLSA----SPLPPSSYRLGVKAASLHELFPTHLTDA 601 (704)
Q Consensus 526 ~~p~~~~~~l~g~~~~~~~e~~a~~~gg~~~~~p~q~l~dfl~~~~~~----~~l~~~~~~~~~~~~~l~~~~p~~~~~~ 601 (704)
+.|. ++-.++.+.+.+ . .|.|.+..+|.+.+.. ..+.. -++ +......+.+...+.
T Consensus 266 llP~-----~~~~~l~~~l~~-----~-----~~~kslkn~L~~~lp~rlv~~~l~~----~~i-~~~~~~~ls~~~~~~ 325 (408)
T COG2081 266 LLPD-----VDAEELLRELRR-----A-----NPKKSLKNALAKLLPKRLVEFLLER----AGI-PDEPLAQLSPKELAQ 325 (408)
T ss_pred cCCC-----CCHHHHHHHHHh-----h-----ChhhHHHHHHHHHhhhHHHHHHHHh----ccC-CCcchhhcCHHHHHH
Confidence 6662 222333333311 1 2345555555543321 11111 112 112222333455678
Q ss_pred HHHHHHhhhhcC---CCCCCCCeEEEEEEeeecCceeccCCCCCccccCcCCeeEcccc---chhhHH--HHHHHHHHHH
Q 005273 602 LKHSISMFDEEL---PGFISDTGLLHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEG---AGYAGG--IVSAAADGMY 673 (704)
Q Consensus 602 l~~~l~~~~~~~---~G~~~~~a~~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~---aG~~GG--i~sA~~~G~~ 673 (704)
|...|+.|.-.. .+|..+++++|||++++ +|++||||+.+||||||||+ .|++|| +++||++|..
T Consensus 326 l~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~e-------id~kTmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~ 398 (408)
T COG2081 326 LAAALKAWPITPNGTEPYREAEVTAGGVDTKE-------IDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWA 398 (408)
T ss_pred HHHHHhcCeeeccCCcccceeEEecCceehhh-------cCHHHHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHH
Confidence 888999998554 46667788899999999 88899999999999999999 899999 7899999999
Q ss_pred HHHHHHhh
Q 005273 674 AGFAVAKD 681 (704)
Q Consensus 674 Aa~~i~~~ 681 (704)
||+.+...
T Consensus 399 Ag~~~~~~ 406 (408)
T COG2081 399 AGQGAAAW 406 (408)
T ss_pred HHHhhhhh
Confidence 99998764
No 4
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.97 E-value=4.3e-30 Score=283.40 Aligned_cols=380 Identities=21% Similarity=0.255 Sum_probs=238.1
Q ss_pred EEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCc---ccc-cCcchhhhhccC
Q 005273 223 AVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGA---GTW-SDGKLVTRIGRN 298 (704)
Q Consensus 223 ~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~---~~~-sdg~l~~~~~~~ 298 (704)
+|||||++||+||+.|++.|++|+|+||++.+|.+....+. ..||+....... ..+ .+..+.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~--------grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~ 72 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGG--------GRCNLTNSCPTPEFVAYYPRNGKFLRSALSR 72 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCC--------ceEEccCCCcchhHHHhcCCCcHHHHHHHHh
Confidence 59999999999999999999999999999887653221111 011111000000 001 111221111111
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.++++...|++......++.++..+....+++.|.+.+++.|++++++++|+++..+++ .+.|++. +
T Consensus 73 -~~~~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~~v~~~-~----- 144 (400)
T TIGR00275 73 -FSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN-GFGVETS-G----- 144 (400)
T ss_pred -CCHHHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-eEEEEEC-C-----
Confidence 1234567788899998887777777777777888999999999999999999999999976555 3455552 2
Q ss_pred CceeEEecCeEEEcCCCCh-------HHHHHHHHhCCCcccc-cceeeEEEEecchhhhcccccccchhhhcccCCCCcc
Q 005273 379 SDIQKLGFDAVILAVGHSA-------RDIYEMLVSHNINLVP-KDFAVGLRMEHPQELINSIQYSELATEVQKGRGKVPV 450 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s-------~~~~~~l~~~gi~l~~-~~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~ 450 (704)
..+.+|.||+|+|+++ .+.+.+++++|+.+.+ .|..+++.+..+. ....+ | +..
T Consensus 145 ---~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~~~--~~~l~----------G---v~~ 206 (400)
T TIGR00275 145 ---GEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESF--LKELS----------G---ISL 206 (400)
T ss_pred ---cEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCCcc--cccCC----------C---CcC
Confidence 2689999999999854 4678999999998765 4667777766541 11111 1 111
Q ss_pred ccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEccCCCCcceecCcccccCCCccccceeEEeeecCCcCccc
Q 005273 451 ADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRWANAALVVTVSAKDFDTLD 530 (704)
Q Consensus 451 ~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~~n~~~~~~v~~~d~~p~~ 530 (704)
.....+...+. . + ....|+++||+++.+|+++..+|............ +.+ ..||.|.
T Consensus 207 ~~~~~~~~~~~--------------~---~-~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~--~~~-~id~~p~- 264 (400)
T TIGR00275 207 DGVVLSLVNGK--------------K---V-LEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKG--VEL-EIDLLPD- 264 (400)
T ss_pred ccEEEEecCCc--------------E---E-EeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCC--cEE-EEEcCCC-
Confidence 00000000010 0 1 13468999999999999995444332110000111 112 3577772
Q ss_pred CCCCchhhHHHHHHHHHHHHhCCCceeeccccHHhhhcCCCCCCCCCCCcccCceeEccCCccChHHHHHHHHHHHHhhh
Q 005273 531 LHGPLAGVKFQREFEQRAAIMGGGNFVVPAQKVTDFLENKLSASPLPPSSYRLGVKAASLHELFPTHLTDALKHSISMFD 610 (704)
Q Consensus 531 ~~~~l~g~~~~~~~e~~a~~~gg~~~~~p~q~l~dfl~~~~~~~~l~~~~~~~~~~~~~l~~~~p~~~~~~l~~~l~~~~ 610 (704)
++..++.+.+.+.....+... ..+.+..+++.++....+....+.+....++ +.+...+.|.+.|++|.
T Consensus 265 ----~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~lk~~~ 333 (400)
T TIGR00275 265 ----LSEEELEQRLKRLRKSNPKKT---VKNILKGLLPKRLAELLLEQLGIDPDLPAAQ----LSKKEIKKLVQLLKNWP 333 (400)
T ss_pred ----CCHHHHHHHHHHHHHHChhhh---HHHHhhhhhhHHHHHHHHHHcCCCCCCChHH----CCHHHHHHHHHHHhCCE
Confidence 334455555555443322221 1333444444444322111111112222222 33455678888899888
Q ss_pred hcC---CCCCCCCeEEEEEEeeecCceeccCCCCCccccCcCCeeEcccc---chhhHH--HHHHHHHHHHHHH
Q 005273 611 EEL---PGFISDTGLLHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEG---AGYAGG--IVSAAADGMYAGF 676 (704)
Q Consensus 611 ~~~---~G~~~~~a~~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~---aG~~GG--i~sA~~~G~~Aa~ 676 (704)
-.+ .||..++++.|||.+++ +|+.||||+.+||||||||+ +|.||| +++||++|+.||.
T Consensus 334 ~~~~g~~~~~~a~vt~GGv~~~e-------i~~~~m~~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 334 FTVSGTRGFKEAEVTAGGVSLKE-------INPKTMESKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred EEecCcCccceeEEecCcccchh-------cChhhhhhcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhcC
Confidence 554 46778899999999999 88899999999999999999 899999 7899999999973
No 5
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-27 Score=257.50 Aligned_cols=378 Identities=21% Similarity=0.288 Sum_probs=220.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.+||+|||||.||++||+++||.|.++.|+.-+... +-...||-..|-- ..+.+++.+..-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dt--------------ig~msCNPaIGG~-----~KG~lvrEIDAL 64 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDT--------------IGEMSCNPAIGGP-----GKGHLVREIDAL 64 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCc--------------eeecccccccCCc-----ccceeEEeehhc
Confidence 489999999999999999999999999999876432 1123455544332 334445444333
Q ss_pred chhHHHHHHHHHHcCCCceeecCCcc-ccCCC----ChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCC-EEEEEEEc
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKS-HLGTD----RLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENA-RIVGVKVS 371 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~-~~g~~----~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g-~v~GV~~~ 371 (704)
.+.+..+. ...++.+.++...+. ....- .-..+.+.+++.++.. +.+++ ...|++|+.+++ +|+||++.
T Consensus 65 GG~Mg~~~---D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~ 140 (621)
T COG0445 65 GGLMGKAA---DKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTA 140 (621)
T ss_pred cchHHHhh---hhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeC
Confidence 33333322 356777777766542 11111 1123667788888776 56655 567899999777 59999999
Q ss_pred CCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccccceeeEEEEecchhhh-ccccc-ccchhhhcccCCCCc
Q 005273 372 DSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEHPQELI-NSIQY-SELATEVQKGRGKVP 449 (704)
Q Consensus 372 ~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~~~~avG~~~~~p~~~~-~~~~~-~~l~~e~~~g~g~~~ 449 (704)
++ ..+.|++||++||.+-+.. +.+-...+.-|-.-+.|...+ +.+.. +......-.|.+ |
T Consensus 141 ~G--------~~~~a~aVVlTTGTFL~G~--------I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTP--p 202 (621)
T COG0445 141 DG--------PEFHAKAVVLTTGTFLRGK--------IHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTP--P 202 (621)
T ss_pred CC--------CeeecCEEEEeecccccce--------EEeccccccCCCCCCccchHHHHHHHhcCcEEeeeccCCC--C
Confidence 87 5799999999999875310 000000111110000110000 00000 000000000111 1
Q ss_pred cccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEccCCCCcceecCcccccCCCccccceeEEeeecCC----
Q 005273 450 VADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRWANAALVVTVSAKD---- 525 (704)
Q Consensus 450 ~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~~n~~~~~~v~~~d---- 525 (704)
+.+-+.+. |+. |.. +++...+..+|+.. ......+-+.++...
T Consensus 203 Ri~~~sID--------------------fs~-le~---------q~gD~~~~~fs~~~---~~~~~Qi~C~iT~Tn~~TH 249 (621)
T COG0445 203 RIDARSID--------------------FSK-LEE---------QPGDEPPPVFSFTT---EPHPPQIPCYITYTNEKTH 249 (621)
T ss_pred ccCCCccC--------------------hhh-hcc---------CcCCCCCCccccCC---CCCccccceeeecCChHHH
Confidence 11101000 000 000 00000111122221 011111111111110
Q ss_pred --------cCcccCCCCch--hhHHHHHHHHHHHHhCCCceeeccccHHhhhcCCCCCCCCCCCc-ccCceeEccCCccC
Q 005273 526 --------FDTLDLHGPLA--GVKFQREFEQRAAIMGGGNFVVPAQKVTDFLENKLSASPLPPSS-YRLGVKAASLHELF 594 (704)
Q Consensus 526 --------~~p~~~~~~l~--g~~~~~~~e~~a~~~gg~~~~~p~q~l~dfl~~~~~~~~l~~~~-~~~~~~~~~l~~~~ 594 (704)
..|+ -.|.+. |-.|+.++|.+ +..|-++..++-++.|.+ -...+++++|+..+
T Consensus 250 ~iIr~Nl~rSpm-ysG~Ieg~GPRYCPSIEDK---------------IvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSl 313 (621)
T COG0445 250 EIIRDNLHRSPM-YSGEIEGVGPRYCPSIEDK---------------IVRFADKERHQIFLEPEGLDTDEVYPNGLSTSL 313 (621)
T ss_pred HHHHHhhhhCch-hcccccccCCCCCCCHHHh---------------hccCCCCccceEEecCCCCCCceEecCcccccC
Confidence 0010 001111 11344444443 334444333443444433 44679999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCCeE--EEEEEeeecCceeccCCCCCccccCcCCeeEccccchhhHH---HHHHHH
Q 005273 595 PTHLTDALKHSISMFDEELPGFISDTGL--LHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAGYAGG---IVSAAA 669 (704)
Q Consensus 595 p~~~~~~l~~~l~~~~~~~~G~~~~~a~--~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~aG~~GG---i~sA~~ 669 (704)
|.+++..+.++| ||+.+++.+ .|+||+++.+|.++. .|||||.|+|||+||+++|++|+ .+|+++
T Consensus 314 P~dVQ~~~irsi-------pGlEna~i~rpgYAIEYD~v~p~qL~---~tLEtK~I~GLf~AGQINGTtGYEEAAaQGli 383 (621)
T COG0445 314 PEDVQEQIIRSI-------PGLENAEILRPGYAIEYDYVDPRQLK---PTLETKKIKGLFFAGQINGTTGYEEAAAQGLI 383 (621)
T ss_pred CHHHHHHHHHhC-------cccccceeeccceeeeecccChhhcc---cchhhceecceEEcccccCCchhHHHHhhhHH
Confidence 999998887555 888888888 899999999999997 78999999999999999999998 679999
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhhhhh
Q 005273 670 DGMYAGFAVAKDFGLFPADIESILGKA 696 (704)
Q Consensus 670 ~G~~Aa~~i~~~~~~~~~~~~~~~g~~ 696 (704)
+|++||..+..+.++.+.|.|+|||+-
T Consensus 384 AGiNAal~~~~~~p~il~R~eaYIGVl 410 (621)
T COG0445 384 AGINAALKVQGKEPFILRRDEAYIGVL 410 (621)
T ss_pred HHHHHHHHhcCCCCcccccCcceeeeE
Confidence 999999999999999999999999974
No 6
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.94 E-value=9.5e-26 Score=243.12 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=224.1
Q ss_pred CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCc---ccc-cCcchhhhhccCchhHHHHHHHHHHcCCCce
Q 005273 242 GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGA---GTW-SDGKLVTRIGRNSNSVLAVMNTLVHFGAPAN 317 (704)
Q Consensus 242 g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~---~~~-sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~ 317 (704)
|.+|+|+|+++.+|.+-...+ +..||+....... ..+ .+++++...-.. ....+.++||.+.|++..
T Consensus 1 g~~V~ilEkn~~~GkKil~TG--------~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~-f~~~d~~~fF~~~Gi~~~ 71 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAG--------KSGLNLTHSEPLPRFIERYGDAAEWLAPWLEA-FDAVALQDWARGLGIETF 71 (376)
T ss_pred CCeEEEEeCCCCccceeEEcC--------CCCcccCCCCchHHHHHhcCCchHHHHHHHHh-CCHHHHHHHHHHCCCceE
Confidence 578999999999876543332 1224433211100 011 223333322111 235668899999999999
Q ss_pred eecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 318 ILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 318 ~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
...+++.++.++++..+++.|..++++.||+|+++++|++| ++++ +.+.+.+.. ..++||.||+|||+.+
T Consensus 72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~-------~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQ-------STIEADAVVLALGGAS 141 (376)
T ss_pred ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCc-------eEEecCEEEEcCCCcc
Confidence 88899999999999999999999999999999999999998 4443 456654321 3589999999999854
Q ss_pred -------HHHHHHHHhCCCccccc-ceeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCCCCCc
Q 005273 398 -------RDIYEMLVSHNINLVPK-DFAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSG 469 (704)
Q Consensus 398 -------~~~~~~l~~~gi~l~~~-~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~ 469 (704)
.+.|.+++++|+.+.+. |..+++.+..+..+....+ |- ........ .+
T Consensus 142 ~p~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~----------Gv---~~~~~~~~--~~--------- 197 (376)
T TIGR03862 142 WSQLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDWSAHFASRFA----------GE---PLKRVNAT--AG--------- 197 (376)
T ss_pred ccccCCCcHHHHHHHHCCCcccCCcCeeceEEccCchhhHhhcC----------CC---cccceEEE--eC---------
Confidence 46889999999999875 6667777654211111111 11 00000000 00
Q ss_pred cccchhhhhhhhccCCceEEEccCCCCcceecCcccccCCCccccceeEEeeecCCcCcccCCCCchhhHHHHHHHHHHH
Q 005273 470 VVTTNRSCYSFCMCPGGQIVLTSTNPLELCINGMSFSRRSSRWANAALVVTVSAKDFDTLDLHGPLAGVKFQREFEQRAA 549 (704)
Q Consensus 470 Rd~~~r~v~~fc~~~gG~vv~~~~~~~~~~vng~s~~~r~~~~~n~~~~~~v~~~d~~p~~~~~~l~g~~~~~~~e~~a~ 549 (704)
+ ....|+++||+++.+|+++..+|... .+......-+.+ ..||.|. ++..++.+.+.+.
T Consensus 198 -----~------~~~~GellFTh~GiSGpavl~lS~~~--~~~~~~~~~~~i-~idf~P~-----~~~~~l~~~l~~~-- 256 (376)
T TIGR03862 198 -----T------QQTRGEIVITARGLEGGLIYALSAAL--REQIKAGGSANL-FLDLLPD-----LSLEQVTKRLAAP-- 256 (376)
T ss_pred -----C------eeEeeeEEEECCCccHHHHHHHHHHH--HHHHhcCCceEE-EEECCCC-----CCHHHHHHHHHhh--
Confidence 0 01248999999999999994444332 111111111112 3577772 2222333333221
Q ss_pred HhCCCceeeccccHHhhhcCCCCCCCCCCCcccCceeEccCCccChHHHHHHHHHHHHhhhhcCC---CCCCCCeEEEEE
Q 005273 550 IMGGGNFVVPAQKVTDFLENKLSASPLPPSSYRLGVKAASLHELFPTHLTDALKHSISMFDEELP---GFISDTGLLHGV 626 (704)
Q Consensus 550 ~~gg~~~~~p~q~l~dfl~~~~~~~~l~~~~~~~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~---G~~~~~a~~~Gv 626 (704)
. |.+.+..+|.+... +++.... ...++.....+...+.|.+.|+.|.-.+. ||..++++.|||
T Consensus 257 -~-------~~k~l~~~L~~~~g---i~~~~~~---~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV 322 (376)
T TIGR03862 257 -R-------GKQSLSNHLRKALG---LDGVKRA---LLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGV 322 (376)
T ss_pred -c-------ccchHHHHHHHHhC---CCHHHHH---HHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcc
Confidence 1 35667777764431 1111000 00111111113456788889999885554 566788889999
Q ss_pred EeeecCceeccCCCCCccccCcCCeeEcccc---chhhHH--HHHHHHHHHHHHHHHHhhc
Q 005273 627 ETRTSCPLQIPRNNETCESTSLKGLYPVGEG---AGYAGG--IVSAAADGMYAGFAVAKDF 682 (704)
Q Consensus 627 e~~~~~p~~i~~~~~tles~~i~GLy~~GE~---aG~~GG--i~sA~~~G~~Aa~~i~~~~ 682 (704)
++++ +| .+|||+.+||||||||+ +|.||| ++|||++|+.||+++..-+
T Consensus 323 ~~~E-------I~-~~~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 323 RQDA-------LD-ESLMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cHHH-------cC-hhhhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 77 45789999999999999 899999 7899999999999987543
No 7
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.93 E-value=2.5e-24 Score=242.42 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=94.5
Q ss_pred cccCceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeE--EEEEEeeecCceeccCCCCCccccCcCCeeEcccc
Q 005273 580 SYRLGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGL--LHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEG 657 (704)
Q Consensus 580 ~~~~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~--~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~ 657 (704)
.....+++.+++..||.+++..+.+ .+||+.+++.+ .|+||+++.+|.++. .|||+|.++|||+||++
T Consensus 299 ~~~~~~y~~G~stslp~~~Q~~~~r-------~ipGle~a~i~r~gy~ieyd~i~p~~L~---~~Le~k~~~~lf~AGQi 368 (618)
T PRK05192 299 LDTNEVYPNGISTSLPEDVQLEMLR-------SIPGLENAEILRPGYAIEYDYVDPRQLK---PTLETKKIKGLFFAGQI 368 (618)
T ss_pred CCCCEEeccCccCCCCHHHHHHHHh-------cCcCccceeEeecccceeecccChhhcc---hhheecCCCCeEECccc
Confidence 3446788999999999999977774 45888888888 889999999999986 78999999999999999
Q ss_pred chhhHH---HHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhh
Q 005273 658 AGYAGG---IVSAAADGMYAGFAVAKDFGLFPADIESILGKA 696 (704)
Q Consensus 658 aG~~GG---i~sA~~~G~~Aa~~i~~~~~~~~~~~~~~~g~~ 696 (704)
+|++|+ .+|++++|++||..+. +.++.+.|.++|||+-
T Consensus 369 nGt~GYeEaaaqGl~AgiNaa~~~~-~~~~~~~r~~~yiGvl 409 (618)
T PRK05192 369 NGTTGYEEAAAQGLIAGINAALKVQ-GEPFILKRSEAYIGVL 409 (618)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcchhhHHHH
Confidence 999998 6799999999999998 8889999999999973
No 8
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.92 E-value=3.7e-24 Score=229.53 Aligned_cols=240 Identities=24% Similarity=0.298 Sum_probs=176.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcc-ccc------------
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAG-TWS------------ 287 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~-~~s------------ 287 (704)
||+|||+|.|||++|+.|++. ++|+|+.|++... ++..+.+||.. .++
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~------------------~sS~~AQGGIAa~~~~~Ds~~~Hv~DT 69 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE------------------SSSYWAQGGIAAALSEDDSPELHVADT 69 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC------------------ccchhhcCceEeeeCCCCCHHHHHHHH
Confidence 899999999999999999987 9999999987642 23334444421 222
Q ss_pred --------CcchhhhhccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHH-
Q 005273 288 --------DGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQR- 344 (704)
Q Consensus 288 --------dg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~- 344 (704)
|.+.+..+.. .....++++..+|++++....+.. |.+..-...+++.|.+++++
T Consensus 70 L~AG~glcD~~aV~~iv~---~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~ 146 (518)
T COG0029 70 LAAGAGLCDEEAVEFIVS---EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNR 146 (518)
T ss_pred HHhcCCCCcHHHHHHHHH---hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcC
Confidence 2222222211 234578899999999998776532 33334456799999999987
Q ss_pred CCCEEEeCeEEEEEEEeCC-EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCc
Q 005273 345 LGVTIKFGTRVDDLLIENA-RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNIN 410 (704)
Q Consensus 345 ~Gv~i~~~t~V~~i~~~~g-~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~ 410 (704)
.+|+++.++.+.+|+.+++ .+.||.+.+..+ +..++.|+.||||||+.+ .+...|+...|..
T Consensus 147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~----~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~ 222 (518)
T COG0029 147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNG----ELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAA 222 (518)
T ss_pred CCcEEEecchhhhhhhcCCceEeEEEEecCCC----eEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCe
Confidence 5899999999999999998 555999876532 246899999999999864 3555677777777
Q ss_pred ccccceeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhhccC
Q 005273 411 LVPKDFAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFCMCP 484 (704)
Q Consensus 411 l~~~~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc~~~ 484 (704)
+....| .+.||+.+...-.-..|++|++||+|.+++ +..++|||. ||+|||+|+|++|.+ |..
T Consensus 223 v~DlEF----vQFHPT~l~~~~~~~~LiSEAVRGEGA~L~------~~~GeRFm~~~~p~~ELAPRDVVARAI~~e-~~~ 291 (518)
T COG0029 223 VADLEF----VQFHPTALYIPQRRAFLISEAVRGEGAILV------NEDGERFMPDYHPRGELAPRDVVARAIDAE-MKR 291 (518)
T ss_pred ecCccc----eeeccceecCCCCccceeehhhhcCccEEE------CCCCCccccCCCCccccchHHHHHHHHHHH-HHh
Confidence 766544 678998876663345799999999998544 466778874 999999999999988 666
Q ss_pred Cce-EEEccCCCCc
Q 005273 485 GGQ-IVLTSTNPLE 497 (704)
Q Consensus 485 gG~-vv~~~~~~~~ 497 (704)
+|. |+++.++..+
T Consensus 292 ~g~~V~LD~s~~~~ 305 (518)
T COG0029 292 GGADVFLDISHIPG 305 (518)
T ss_pred cCCeEEEeccCCCc
Confidence 665 8888777543
No 9
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.92 E-value=2.5e-23 Score=233.86 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=91.3
Q ss_pred cCceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeEE--EEEEeeecCceeccCCCCCccccCcCCeeEccccch
Q 005273 582 RLGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGLL--HGVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAG 659 (704)
Q Consensus 582 ~~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~~--~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~aG 659 (704)
...+++.+++..+|..++..+.++ +||+.+++.+. |++|+++.+|.++. .+||++.++|||+|||++|
T Consensus 299 ~~~~~~~G~st~lp~~~q~~i~~~-------ipGle~a~~~r~gy~~e~~~i~p~~l~---~~le~k~~~gLf~AGqi~G 368 (617)
T TIGR00136 299 SDEIYPNGLSTSLPEDVQLQIVRS-------IPGLENAEILRPGYAIEYDFFDPRQLK---PTLETKLIQGLFFAGQING 368 (617)
T ss_pred CCeEEecCeecCCCHHHHHHHHHc-------CcCcccceEeccccceEEeEEChhhCc---hhheeCCCCCeEEccccCC
Confidence 345888999999999999888866 79999999996 88899999998665 6899999999999999999
Q ss_pred hhHH---HHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhh
Q 005273 660 YAGG---IVSAAADGMYAGFAVAKDFGLFPADIESILGKA 696 (704)
Q Consensus 660 ~~GG---i~sA~~~G~~Aa~~i~~~~~~~~~~~~~~~g~~ 696 (704)
.+|. +++++++|++||..+..+.++.+.|.++|||+-
T Consensus 369 t~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l~r~~~yiGvl 408 (617)
T TIGR00136 369 TTGYEEAAAQGLMAGINAALKLQNKEPFILKRSEAYIGVL 408 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccchHhHH
Confidence 8776 567788888888888888899999999999973
No 10
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1e-24 Score=229.55 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=96.3
Q ss_pred cccCceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeE--EEEEEeeecCceeccCCCCCccccCcCCeeEcccc
Q 005273 580 SYRLGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGL--LHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEG 657 (704)
Q Consensus 580 ~~~~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~--~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~ 657 (704)
.-.+-+++.+++..+|++++..|.++| ||..+.+.+ .||||+++.+|.++. .+||++.|+||||+|++
T Consensus 328 lDs~~iYpqG~S~tlpee~Q~~lir~I-------pGLEn~~i~qP~YgVeYDyv~prQlk---~sLeTkkV~GLF~AGQI 397 (679)
T KOG2311|consen 328 LDSDLIYPQGLSNTLPEELQLQLIRSI-------PGLENAEILQPGYGVEYDYVDPRQLK---PSLETKKVQGLFFAGQI 397 (679)
T ss_pred CCCCcccccccccCCCHHHHHHHHHhc-------cCcccceeecccccceecccChHHcc---hhhhhhhccceEEeeee
Confidence 345679999999999999998888766 777777777 899999999999998 68999999999999999
Q ss_pred chhhHH---HHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhh
Q 005273 658 AGYAGG---IVSAAADGMYAGFAVAKDFGLFPADIESILGKA 696 (704)
Q Consensus 658 aG~~GG---i~sA~~~G~~Aa~~i~~~~~~~~~~~~~~~g~~ 696 (704)
+|+||+ .+|++++|++|+.....+.+...+|.|+|||+-
T Consensus 398 NGTTGYEEAAAQGIiAGiNA~~~a~~~~~~~v~Rte~yIGvL 439 (679)
T KOG2311|consen 398 NGTTGYEEAAAQGIIAGINASLRASGKPPVVVSRTEGYIGVL 439 (679)
T ss_pred cCccchHHHHhhhhHhhhhhhhhhcCCCCeeeecccceeEEE
Confidence 999998 679999999999998899999999999999974
No 11
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.88 E-value=4.7e-21 Score=220.21 Aligned_cols=246 Identities=19% Similarity=0.202 Sum_probs=157.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhh---ccccccc-c---ccCCcccccCcch
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML---EMESNFC-F---GEGGAGTWSDGKL 291 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l---~~~~n~~-~---g~gG~~~~sdg~l 291 (704)
..||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+..... ....+.. + ...+.....|.++
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 5799999999999999999999999999999987655433222211111110 0000000 0 0000111245555
Q ss_pred hhhhccCchhHHHHHHHHHHcCCCceeecCCc---------c-----ccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEE
Q 005273 292 VTRIGRNSNSVLAVMNTLVHFGAPANILVDGK---------S-----HLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDD 357 (704)
Q Consensus 292 ~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~---------~-----~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~ 357 (704)
+..+..+ ..+.++|+.++|+++....++. . |.+......+++.|.+.+.+.||++++++.+++
T Consensus 85 v~~~~~~---s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~ 161 (566)
T PRK06452 85 AELLSNK---SGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHH---HHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEE
Confidence 5555443 3445667788999886543321 0 111123456888898888888999999999999
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEec
Q 005273 358 LLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 358 i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
|+.++++|+||.+.+.+++ +...+.|+.||||||+++ .+...|+...|..+....+ .+.|
T Consensus 162 Li~~~g~v~Gv~~~~~~~g---~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~----~q~~ 234 (566)
T PRK06452 162 LVTDNKKVVGIVAMQMKTL---TPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEF----VQFH 234 (566)
T ss_pred EEEECCEEEEEEEEECCCC---eEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcc----eEEe
Confidence 9999999999998764321 235789999999999865 2455666666666544322 3334
Q ss_pred chhhhcccccccchhhhcccCCCCccccccceecccCCCCCC-------CCccccchhhhhhhhcc
Q 005273 425 PQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGDA-------LSGVVTTNRSCYSFCMC 483 (704)
Q Consensus 425 p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e-------~a~Rd~~~r~v~~fc~~ 483 (704)
|..+.. .+.+.++.++|.+. .+++..++||+++ +++||.++|+++.++..
T Consensus 235 pt~~~~---~~~l~~e~~rg~g~------ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~ 291 (566)
T PRK06452 235 PTALYP---SDVLISEAARGEGG------ILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIRE 291 (566)
T ss_pred eeEECC---CCeEEEEeeecCCC------EEECCCCCCCccccCccccccCCccHHHHHHHHHHHh
Confidence 532211 12345556666654 4556778888874 79999999999988643
No 12
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.87 E-value=6.9e-21 Score=204.65 Aligned_cols=144 Identities=31% Similarity=0.391 Sum_probs=89.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEe-CccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIER-GQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNS 299 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~-~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~ 299 (704)
||+|||||+||++||+++|+.|.+|+|+.. .+.++ ...||-.++.- ..+.+...+..-.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~---------------~~~Cnpsigg~-----~kg~L~~Eidalg 60 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG---------------EMSCNPSIGGI-----AKGHLVREIDALG 60 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-----------------SSSSEEEST-----THHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc---------------cccchhhhccc-----cccchhHHHhhhh
Confidence 799999999999999999999999999933 33322 22233332221 2233333322211
Q ss_pred hhHHHHHHHHHHcCCCceeecCCccccC-----CCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCC
Q 005273 300 NSVLAVMNTLVHFGAPANILVDGKSHLG-----TDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDS 373 (704)
Q Consensus 300 ~~~~~~l~~l~~~G~~~~~~~~g~~~~g-----~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~ 373 (704)
..+. +.....++.+.++...+...+ .-.-..+.+.+++.+++. +++++ ..+|++|..++++|.||.+.++
T Consensus 61 g~m~---~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g 136 (392)
T PF01134_consen 61 GLMG---RAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDG 136 (392)
T ss_dssp -SHH---HHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTS
T ss_pred hHHH---HHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCC
Confidence 2222 233455565666543332111 112234677888888875 67775 6799999999999999999876
Q ss_pred CCCCCCceeEEecCeEEEcCCCC
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
..+.+|.||+|||.+
T Consensus 137 --------~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 137 --------EEIEADAVVLATGTF 151 (392)
T ss_dssp --------EEEEECEEEE-TTTG
T ss_pred --------CEEecCEEEEecccc
Confidence 589999999999983
No 13
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.87 E-value=1.6e-20 Score=218.52 Aligned_cols=246 Identities=16% Similarity=0.136 Sum_probs=154.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc----cccccc--c--ccCCcccccCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE----MESNFC--F--GEGGAGTWSDGK 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~----~~~n~~--~--g~gG~~~~sdg~ 290 (704)
..||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+....-+ ...+.. + ...+.....|.+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~~ 84 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQE 84 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCHH
Confidence 57999999999999999999999999999999877544322211111111100 000000 0 000001113334
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCCc-------------------------cccC----------CCChHHHH
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDGK-------------------------SHLG----------TDRLIPLL 335 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~-------------------------~~~g----------~~~~~~l~ 335 (704)
++..+... ..+.++|+..+|+++.....+. .+.+ ......++
T Consensus 85 ~vr~~v~~---sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~ 161 (657)
T PRK08626 85 VARMFVHT---APKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTML 161 (657)
T ss_pred HHHHHHHH---HHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHH
Confidence 43433332 3446677888899876543210 1111 11234577
Q ss_pred HHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHH
Q 005273 336 RNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYE 402 (704)
Q Consensus 336 ~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~ 402 (704)
..|.+.+.+.||+|++++.|++|+.++++|.||.+.+..+ ++...+.|+.||||||++++ +...
T Consensus 162 ~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~---G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~~ 238 (657)
T PRK08626 162 YAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLIT---GELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGAA 238 (657)
T ss_pred HHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCC---CcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHHH
Confidence 7888888899999999999999999889999998875321 12456889999999998763 4555
Q ss_pred HHHhCCC-cccccceeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccch
Q 005273 403 MLVSHNI-NLVPKDFAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTN 474 (704)
Q Consensus 403 ~l~~~gi-~l~~~~~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~ 474 (704)
|+.+.|. .+.... +.+.||..+.. .+.+.++.++|.+. .+++..++||++ |+++||.++
T Consensus 239 mA~~aGaa~l~~mE----~vqfhPt~~~~---~g~l~~e~~rg~G~------ilvn~~G~RF~~~y~p~~~Ela~rd~vs 305 (657)
T PRK08626 239 IALETGVAPLGNME----AVQFHPTAIVP---SGILVTEGCRGDGG------LLRDKDGYRFMPDYEPEKKELASRDVVS 305 (657)
T ss_pred HHHHcCCccccCcc----ceEEeccEECC---CCeEEEeeccCCCE------EEECCCCCCCCcccCcccccccchhHHH
Confidence 6666664 443332 23345543221 23456677777765 344566777775 899999999
Q ss_pred hhhhhhhcc
Q 005273 475 RSCYSFCMC 483 (704)
Q Consensus 475 r~v~~fc~~ 483 (704)
|+++.++..
T Consensus 306 rai~~~~~~ 314 (657)
T PRK08626 306 RRMTEHIRK 314 (657)
T ss_pred HHHHHHHHh
Confidence 999988543
No 14
>PLN02815 L-aspartate oxidase
Probab=99.86 E-value=1.2e-20 Score=216.84 Aligned_cols=258 Identities=19% Similarity=0.161 Sum_probs=159.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccc----ccccCCcccccCcchh
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNF----CFGEGGAGTWSDGKLV 292 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~----~~g~gG~~~~sdg~l~ 292 (704)
....||+|||+|.|||.||+.+++.| +|+|+||....++.+.-..+.+ ...+....+. ...........|++++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi-~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 104 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGV-SAVLDPSDSVESHMRDTIVAGAFLCDEETV 104 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhccc-ccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 34579999999999999999999999 9999999987665332111110 0001110000 0000001122455555
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDD 357 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~ 357 (704)
..+..+. .+.++||.++|+++.....+.. |.+......++..|.+.+++. |+++++++.+++
T Consensus 105 ~~~~~~s---~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 105 RVVCTEG---PERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHH---HHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 5554443 4456677889998875433221 111112345788888888775 899999999999
Q ss_pred EEEeC-C---EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEE
Q 005273 358 LLIEN-A---RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGL 420 (704)
Q Consensus 358 i~~~~-g---~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~ 420 (704)
|+.++ + +|+||.+.+..+ +....+.|+.||||||+++. +.+.|+...|..+....|
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~---g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mef---- 254 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRT---GEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEF---- 254 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCC---CeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCce----
Confidence 99853 3 389998754322 12457899999999998752 455666677766654433
Q ss_pred EEecchhhhccc---------ccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhhccCC
Q 005273 421 RMEHPQELINSI---------QYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFCMCPG 485 (704)
Q Consensus 421 ~~~~p~~~~~~~---------~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc~~~g 485 (704)
.+.||+.+.... ....+.++.++|.+. .+++..++||++ |+++||.++|+++.+....+
T Consensus 255 vQfhPt~~~~~~~~~~~~~~~~~~~l~~ea~rg~G~------ilvN~~GeRF~~~y~~~~ela~rd~va~ai~~e~~~~~ 328 (594)
T PLN02815 255 VQFHPTALADEGLPIKPAKARENAFLITEAVRGDGG------ILYNLAGERFMPLYDERAELAPRDVVARSIDDQLKKRN 328 (594)
T ss_pred eEEeeeeecCCCccccccccccccceeehhhccCCc------EEECCCCCCCccccCcccccCChHHHHHHHHHHHHhcC
Confidence 344564432210 112355667777665 345567778874 79999999999998753322
Q ss_pred c-eEEEcc
Q 005273 486 G-QIVLTS 492 (704)
Q Consensus 486 G-~vv~~~ 492 (704)
+ .|+++.
T Consensus 329 ~~~v~lD~ 336 (594)
T PLN02815 329 EKYVLLDI 336 (594)
T ss_pred CCEEEEeC
Confidence 2 355543
No 15
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.86 E-value=2.8e-20 Score=216.09 Aligned_cols=256 Identities=18% Similarity=0.181 Sum_probs=155.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc-cccch-hHHHHHH-hhccccccc--c--ccCCcccccCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ-RGRDI-GALVVRR-MLEMESNFC--F--GEGGAGTWSDGK 290 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~-~~~~~-~~~~~~~-~l~~~~n~~--~--g~gG~~~~sdg~ 290 (704)
...||+|||+|.|||+||+.+++.|.+|+|+||...+++ .+... +++.... ......+.. + ...+.....+.+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 357999999999999999999999999999999766542 21111 1111100 000111100 0 000111224455
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCC---------cc-----ccCCCCh----HHHHHHHHHHHHHCCCEEEeC
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDG---------KS-----HLGTDRL----IPLLRNFRQHLQRLGVTIKFG 352 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g---------~~-----~~g~~~~----~~l~~~L~~~l~~~Gv~i~~~ 352 (704)
++..+.... .+.++||.++|+++.....+ +. +...... ..+.+.|.+.+++.||+|+++
T Consensus 114 lv~~l~~~s---~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~ 190 (640)
T PRK07573 114 NVYRLAEVS---VNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTR 190 (640)
T ss_pred HHHHHHHHH---HHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEec
Confidence 555554443 45667888999998643222 11 0100011 123366777788889999999
Q ss_pred eEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeE
Q 005273 353 TRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVG 419 (704)
Q Consensus 353 t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG 419 (704)
+.|++|+.++++|+||.+.+..++ ....+.|+.||||||++++ +.+.|+.+.|..+....
T Consensus 191 t~v~~Li~d~g~V~GV~~~~~~~g---~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~me---- 263 (640)
T PRK07573 191 TEMLDLVVVDGRARGIVARNLVTG---EIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANPC---- 263 (640)
T ss_pred eEEEEEEEeCCEEEEEEEEECCCC---cEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCcc----
Confidence 999999988899999998753211 2357899999999999653 45567777777765443
Q ss_pred EEEecchhhhccc---ccccchhhhcccCCCCccccc-c---ceecc--cCC--CC-------CCCCccccchhhhhhhh
Q 005273 420 LRMEHPQELINSI---QYSELATEVQKGRGKVPVADY-K---VAKYV--SGE--DG-------DALSGVVTTNRSCYSFC 481 (704)
Q Consensus 420 ~~~~~p~~~~~~~---~~~~l~~e~~~g~g~~~~~d~-~---~~~~~--~~~--~~-------~e~a~Rd~~~r~v~~fc 481 (704)
+.+.||+.+...- ....+++|.++|.|.+.++.- . ..+.. +++ |+ .+++|||+++|+++.++
T Consensus 264 ~vq~hPt~~~~~g~~~~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~~~~~~f~~~~~~~~~el~~rd~v~rai~~e~ 343 (640)
T PRK07573 264 FTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLERRYPAFGNLVPRDVASRAAKERC 343 (640)
T ss_pred ceeeccccccCCCcccccceEEeccccCCceEEEcCcccccccccccccchhhhchhhhCccccCCCCcCHHHHHHHHHH
Confidence 3445665432211 112466778888876655421 0 00000 122 43 48999999999999886
Q ss_pred cc
Q 005273 482 MC 483 (704)
Q Consensus 482 ~~ 483 (704)
..
T Consensus 344 ~~ 345 (640)
T PRK07573 344 DA 345 (640)
T ss_pred Hh
Confidence 54
No 16
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.86 E-value=3.4e-20 Score=214.65 Aligned_cols=246 Identities=20% Similarity=0.193 Sum_probs=157.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc-cccccc----cccCCcccccCcchh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNFC----FGEGGAGTWSDGKLV 292 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~~----~g~gG~~~~sdg~l~ 292 (704)
...||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+.....+ .+.+.. ..........|.+++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 357999999999999999999999999999999887554322111110000000 000000 000000112455555
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc----ccC------------------CCChHHHHHHHHHHHHHCCCEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS----HLG------------------TDRLIPLLRNFRQHLQRLGVTIK 350 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~----~~g------------------~~~~~~l~~~L~~~l~~~Gv~i~ 350 (704)
..+.+. ..+.++||.++|+++....++.. +.+ ......++..|.+.+++.|++++
T Consensus 108 ~~l~~~---s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~ 184 (617)
T PTZ00139 108 QYMCRE---APQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFF 184 (617)
T ss_pred HHHHHH---HHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 555443 34566778899999876433221 000 01234688899999999999999
Q ss_pred eCeEEEEEEE-eCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccce
Q 005273 351 FGTRVDDLLI-ENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDF 416 (704)
Q Consensus 351 ~~t~V~~i~~-~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~ 416 (704)
.++.+++|+. ++++|.||.+.+..+ +....+.|++||||||++++ +.+.|+.+.|..+....+
T Consensus 185 ~~~~~~~Li~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef 261 (617)
T PTZ00139 185 IEYFALDLIMDEDGECRGVIAMSMED---GSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEF 261 (617)
T ss_pred eceEEEEEEECCCCEEEEEEEEECCC---CeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCce
Confidence 9999999998 678999998754221 12457899999999999753 455677777776654433
Q ss_pred eeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhhc
Q 005273 417 AVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 417 avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc~ 482 (704)
.+.||+.+.. .+.+.++.++|.+. .+++..++||++ |+++||.++|+++.+.+
T Consensus 262 ----~q~~pt~~~~---~~~l~~e~~rg~g~------~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~ 321 (617)
T PTZ00139 262 ----VQFHPTGIYG---AGCLITEGCRGEGG------ILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEIL 321 (617)
T ss_pred ----EEeccccccC---CCcEEEeeccCCCc------EEECCCCCCcccccCccccccccchHHHHHHHHHHH
Confidence 4446643322 12355666666654 455677888876 69999999999987643
No 17
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.86 E-value=1.6e-20 Score=216.80 Aligned_cols=251 Identities=19% Similarity=0.165 Sum_probs=153.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc-cccchhHHHHHHhhc---ccccc-cc---ccCCcccccCcchhh
Q 005273 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ-RGRDIGALVVRRMLE---MESNF-CF---GEGGAGTWSDGKLVT 293 (704)
Q Consensus 222 v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~-~~~~~~~~~~~~~l~---~~~n~-~~---g~gG~~~~sdg~l~~ 293 (704)
|+|||+|+|||+||+.+++.|.+|+|+||...+++ .+....+.+ ...++ ...+. .+ .........|.+++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi-~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGI-NGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhh-hhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999999999984432 221111111 11111 00000 00 000011223445555
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCc---------c-----ccCCCChHHHHHHHHHHHHH----CCCEEEeCeEE
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGK---------S-----HLGTDRLIPLLRNFRQHLQR----LGVTIKFGTRV 355 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~---------~-----~~g~~~~~~l~~~L~~~l~~----~Gv~i~~~t~V 355 (704)
.+.... .+.++||.++|+++.....+. . +........++..|.+.+++ .||++++++.+
T Consensus 80 ~l~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v 156 (603)
T TIGR01811 80 RLAVAS---PEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEM 156 (603)
T ss_pred HHHHHH---HHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEE
Confidence 544433 346678889999886543321 1 11111234566666665544 38999999999
Q ss_pred EEEEEeC-CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEE
Q 005273 356 DDLLIEN-ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLR 421 (704)
Q Consensus 356 ~~i~~~~-g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~ 421 (704)
++|+.++ ++|+||.+.+..++ ....+.|+.||+|||+++ .+.+.|+.+.|..+....+ .
T Consensus 157 ~~Li~dd~grV~GV~~~~~~~g---~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~----v 229 (603)
T TIGR01811 157 LDIIVVDGNRARGIIARNLVTG---EIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEF----I 229 (603)
T ss_pred EEEEEcCCCEEEEEEEEECCCC---cEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcc----e
Confidence 9998854 59999998753211 235789999999999964 3567788888887765433 3
Q ss_pred Eecchhhhccc---ccccchhhhcccCCCCcccc----ccceec--ccCC--CC-------CCCCccccchhhhhhhhcc
Q 005273 422 MEHPQELINSI---QYSELATEVQKGRGKVPVAD----YKVAKY--VSGE--DG-------DALSGVVTTNRSCYSFCMC 483 (704)
Q Consensus 422 ~~~p~~~~~~~---~~~~l~~e~~~g~g~~~~~d----~~~~~~--~~~~--~~-------~e~a~Rd~~~r~v~~fc~~ 483 (704)
+.||+.+...- ....+++|.++|.|.+.++. ..+++. .+++ || .+++|||+++|+++..+..
T Consensus 230 q~~Pt~~~~~g~~~~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~ 309 (603)
T TIGR01811 230 QIHPTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDA 309 (603)
T ss_pred EEEeeeecCCCcccccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHh
Confidence 44665432210 11236678888887765542 222322 4455 43 2799999999999998754
No 18
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.86 E-value=3.5e-20 Score=213.60 Aligned_cols=244 Identities=20% Similarity=0.206 Sum_probs=156.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc--cccccc--c--ccCCcccccCcchh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE--MESNFC--F--GEGGAGTWSDGKLV 292 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~--~~~n~~--~--g~gG~~~~sdg~l~ 292 (704)
..||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+. .... .+.... + .........|++++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~-a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGIT-VALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHh-hhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 579999999999999999999999999999999776543322211111 1111 111110 0 00011123455666
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc----ccC-----------------CCChHHHHHHHHHHHHHCCCEEEe
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS----HLG-----------------TDRLIPLLRNFRQHLQRLGVTIKF 351 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~----~~g-----------------~~~~~~l~~~L~~~l~~~Gv~i~~ 351 (704)
..+..+. .+.++||.++|+++....++.. +.+ ......++..|.+++.+.|+++++
T Consensus 86 ~~~~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~ 162 (588)
T PRK08958 86 EYMCKTG---PEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFS 162 (588)
T ss_pred HHHHHHH---HHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEe
Confidence 6555443 4456677889999875432211 101 112456888899888889999999
Q ss_pred CeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCccccccee
Q 005273 352 GTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFA 417 (704)
Q Consensus 352 ~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~a 417 (704)
++.+++|+.+ +++|.||.+.+..+ +....+.|+.||||||+++. +.+.|+.+.|..+....+
T Consensus 163 ~~~~~~Li~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~- 238 (588)
T PRK08958 163 EWYALDLVKNQDGAVVGCTAICIET---GEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEM- 238 (588)
T ss_pred CcEEEEEEECCCCEEEEEEEEEcCC---CcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcc-
Confidence 9999999985 78999998754211 12457899999999999763 344556566655544332
Q ss_pred eEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhhc
Q 005273 418 VGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 418 vG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc~ 482 (704)
.+.||..+.. .+.+..+.++|.+. .+++..++||++ ++++||.++|+++.+.+
T Consensus 239 ---~q~~Pt~~~~---~~~l~~e~~rg~g~------ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~ 298 (588)
T PRK08958 239 ---WQFHPTGIAG---AGVLVTEGCRGEGG------YLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIR 298 (588)
T ss_pred ---eEeecCcccC---CceEEeeccccCce------EEECCCCCChhhhhCccccccCChhHHHHHHHHHHH
Confidence 3345543221 23455666666654 345567778876 68999999999998753
No 19
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.86 E-value=1.4e-20 Score=217.95 Aligned_cols=245 Identities=19% Similarity=0.191 Sum_probs=157.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc-cccccc----cccCCcccccCcchh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNFC----FGEGGAGTWSDGKLV 292 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~~----~g~gG~~~~sdg~l~ 292 (704)
...||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+...... ...+.. ..........|++++
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 357999999999999999999999999999999877654322111111000000 000000 000001123455666
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc----cc------------------CCCChHHHHHHHHHHHHHCCCEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS----HL------------------GTDRLIPLLRNFRQHLQRLGVTIK 350 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~----~~------------------g~~~~~~l~~~L~~~l~~~Gv~i~ 350 (704)
..+.++. .+.++|+.++|+++....++.. +. +......+++.|.+.+.+.||+|+
T Consensus 129 ~~l~~~s---~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~ 205 (635)
T PLN00128 129 QYMCREA---PKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFF 205 (635)
T ss_pred HHHHHhH---HHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 6555543 4456678889999875433210 00 111234688899998988999999
Q ss_pred eCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccce
Q 005273 351 FGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDF 416 (704)
Q Consensus 351 ~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~ 416 (704)
.++.+++|+.+ +++|.||.+.+..+ ++...+.|++||||||++++ +.+.|+.+.|..+....+
T Consensus 206 ~~~~~~~Li~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mef 282 (635)
T PLN00128 206 VEYFALDLIMDSDGACQGVIALNMED---GTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEF 282 (635)
T ss_pred EeeEEEEEEEcCCCEEEEEEEEEcCC---CeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcc
Confidence 99999999887 68999998855321 12467899999999999763 455666667766654433
Q ss_pred eeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 417 AVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 417 avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
.+.||+.+.. .+.+.++.++|.+. .+++..++||++ |+++||.++|+++.++
T Consensus 283 ----vqfhPt~~~~---~~~l~~ea~rg~g~------~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~ 341 (635)
T PLN00128 283 ----VQFHPTGIYG---AGCLITEGSRGEGG------ILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEI 341 (635)
T ss_pred ----eEEecccccC---CCeEEeeeccCCCc------EEECCCCCCcccccCcccccccchhHHHHHHHHHH
Confidence 3446654321 12355666777664 345567778775 6899999999998764
No 20
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.85 E-value=2.5e-20 Score=207.79 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=152.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccccc-c-cCCcc-cccCcchhhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCF-G-EGGAG-TWSDGKLVTRI 295 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~-g-~gG~~-~~sdg~l~~~~ 295 (704)
..||||||+|.|||.||+.++ .|.+|+|+||....++.+.-..+.+. ...+.++...+ . .-..+ ...+.+++..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~-~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGIS-VARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhhe-eCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 479999999999999999975 79999999999876543221111110 00000000000 0 00001 11344444444
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecC--------Ccc-----ccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEEEe
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVD--------GKS-----HLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLLIE 361 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~--------g~~-----~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~ 361 (704)
..+ ..+.++|+.++|+++..... ++. +........+++.|.+.+++ .||+|+++++|++|+.+
T Consensus 82 ~~~---s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~ 158 (433)
T PRK06175 82 ANE---SIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN 158 (433)
T ss_pred HHH---HHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec
Confidence 433 34456677888988754211 110 11112345688888888876 49999999999999888
Q ss_pred CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEecchhh
Q 005273 362 NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEHPQEL 428 (704)
Q Consensus 362 ~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~p~~~ 428 (704)
+++|+||.+.+..+ ...+.|+.||+|||+++ .+.+.++.+.|..+....+ .+.||..+
T Consensus 159 ~~~v~Gv~~~~~g~-----~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~----~q~~p~~~ 229 (433)
T PRK06175 159 DNTCIGAICLKDNK-----QINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDY----IQIHPTAF 229 (433)
T ss_pred CCEEEEEEEEECCc-----EEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCce----EEEeceEe
Confidence 88999987543211 24689999999999865 3567788888888766543 23355432
Q ss_pred hccc--ccccchhhhcccCCCCccccccceecccCCCCCCCCccccchhhhhhhh
Q 005273 429 INSI--QYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFC 481 (704)
Q Consensus 429 ~~~~--~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc 481 (704)
...- ....+.++.+++.+. .+++..++||++|+++||.+++.++.+.
T Consensus 230 ~~~~~~~~~~l~~~~~~~~g~------ilVN~~G~RF~~E~~~~~~~~~ai~~~~ 278 (433)
T PRK06175 230 YEETIEGKKFLISESVRGEGG------KLLNSKGERFVDELLPRDVVTKAILEEM 278 (433)
T ss_pred ccCCCCCcceEeehhhcCCce------EEECCCCCChhhccccHHHHHHHHHHHH
Confidence 2110 111234445555543 5667889999999999999999998764
No 21
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.85 E-value=7.6e-20 Score=210.91 Aligned_cols=245 Identities=22% Similarity=0.246 Sum_probs=154.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccccchhHHHHHHhh--ccccccc----cccCCcccccCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRGRDIGALVVRRML--EMESNFC----FGEGGAGTWSDGK 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~~~~~~~~~~~~l--~~~~n~~----~g~gG~~~~sdg~ 290 (704)
..||+|||+|.|||+||+.+++.| .+|+|+||....++.+....+.+..... ....... ....+.....+.+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999874 8999999987655432211111110000 0000000 0000011123444
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHHCCCEEEeCeEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVD 356 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~ 356 (704)
++..+... ....++|+.++|+++....+++. |........+++.|.+.+++.||++++++.|+
T Consensus 83 ~v~~l~~~---a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~ 159 (575)
T PRK05945 83 AVAILTQE---APDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVM 159 (575)
T ss_pred HHHHHHHH---HHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEE
Confidence 55444433 23456678889999876543321 11112345688899999999999999999999
Q ss_pred EEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEe
Q 005273 357 DLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRME 423 (704)
Q Consensus 357 ~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~ 423 (704)
+|+.++++|.|+...+... ++...+.|+.||+|||+++ .+.+.|+.+.|..+....| .+.
T Consensus 160 ~L~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~----~qf 232 (575)
T PRK05945 160 RLILEDNQAKGVVMYHIAD---GRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEF----VQF 232 (575)
T ss_pred EEEEECCEEEEEEEEEcCC---CeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcc----eEE
Confidence 9998889999998643211 1234689999999999975 2456677777777655433 334
Q ss_pred cchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhhc
Q 005273 424 HPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 424 ~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc~ 482 (704)
||..+.. .+.+.++.++|.+. .+++..++||++ |+++||.++|+++.+..
T Consensus 233 ~pt~~~~---~~~l~~~~~rg~g~------~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~ 289 (575)
T PRK05945 233 HPTGLYP---VGVLISEAVRGEGA------YLINSEGDRFMADYAPSRMELAPRDITSRAITLEIR 289 (575)
T ss_pred eeeeecC---CCeEEeeecccCce------EEECCCCCCcccccCccccccCchhHHHHHHHHHHH
Confidence 5533211 12345555666554 455667788886 78999999999998753
No 22
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.85 E-value=4.8e-20 Score=213.08 Aligned_cols=245 Identities=20% Similarity=0.215 Sum_probs=152.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc-cccccc--c--ccCCcccccCcchh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNFC--F--GEGGAGTWSDGKLV 292 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~~--~--g~gG~~~~sdg~l~ 292 (704)
...||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+....-. ...... + .........|.+++
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 357999999999999999999999999999999876543221111100000000 000000 0 00000112344555
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc-------c---------------cCCCChHHHHHHHHHHHHHCCCEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS-------H---------------LGTDRLIPLLRNFRQHLQRLGVTIK 350 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~-------~---------------~g~~~~~~l~~~L~~~l~~~Gv~i~ 350 (704)
..+..+. .+.++|+.++|+++....+++. | ........++..|.+.+++.||+++
T Consensus 91 ~~l~~~s---~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~ 167 (598)
T PRK09078 91 EYMCREA---PAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFF 167 (598)
T ss_pred HHHHHHH---HHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 5444433 3455678889998865433211 0 0011234688899999989999999
Q ss_pred eCeEEEEEEEeC-CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccce
Q 005273 351 FGTRVDDLLIEN-ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDF 416 (704)
Q Consensus 351 ~~t~V~~i~~~~-g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~ 416 (704)
+++.+++|+.++ ++|.||.+.+..+ +....+.|+.||||||++++ +.+.|+...|..+....
T Consensus 168 ~~~~v~~Li~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me- 243 (598)
T PRK09078 168 IEYFALDLIMDDGGVCRGVVAWNLDD---GTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDME- 243 (598)
T ss_pred EeEEEEEEEEcCCCEEEEEEEEECCC---CcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCc-
Confidence 999999999876 7899998753211 12457899999999999764 34455555555554332
Q ss_pred eeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 417 AVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 417 avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
+.+.||..+.. .+.+.++.+++.+. .+++..++||++ |+++||.++|+++.+.
T Consensus 244 ---~~q~~pt~~~~---~~~l~~e~~rg~G~------ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~ 303 (598)
T PRK09078 244 ---FVQFHPTGIYG---AGCLITEGARGEGG------YLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEI 303 (598)
T ss_pred ---hheecccccCC---CceEEeecccCCce------EEECCCCCCCchhcCccccccccchHHHHHHHHHH
Confidence 23345543221 12344566666554 455677888886 5899999999999864
No 23
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.85 E-value=2.3e-20 Score=213.42 Aligned_cols=245 Identities=19% Similarity=0.186 Sum_probs=155.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccc----cccccCCcccccCcchhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESN----FCFGEGGAGTWSDGKLVT 293 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n----~~~g~gG~~~~sdg~l~~ 293 (704)
...||+|||+|.|||.||+.++ .|.+|+|+||....++.+....+.+. .......+ +...........|++++.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~-a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIA-AAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccce-ecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4579999999999999999986 49999999999876553321111100 00001000 000000111234556666
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeec--------CCcc-----ccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEE
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILV--------DGKS-----HLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLL 359 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~--------~g~~-----~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~ 359 (704)
.+... ..+.++|+.++|+++.... .++. |.+......++..|.+.+++. |+++++++.+++|+
T Consensus 86 ~~~~~---s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li 162 (553)
T PRK07395 86 FLVEQ---APEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW 162 (553)
T ss_pred HHHHH---HHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhe
Confidence 55544 3455667888999886431 1111 111112456888888888765 99999999999998
Q ss_pred EeC--CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEec
Q 005273 360 IEN--ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 360 ~~~--g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
.++ ++|.||.+.+.. ....+.|+.||||||+++ .+.+.|+...|..+....+ .+.|
T Consensus 163 ~~~~~g~v~Gv~~~~~g-----~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~----~q~h 233 (553)
T PRK07395 163 LEPETGRCQGISLLYQG-----QITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEF----FQFH 233 (553)
T ss_pred ecCCCCEEEEEEEEECC-----eEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcc----eeEE
Confidence 863 789999876421 234689999999999953 3456777777777765433 3445
Q ss_pred chhhhcccccccchhhhcccCCCCccccccceecccCCCC------CCCCccccchhhhhhhhc
Q 005273 425 PQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDG------DALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 425 p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~------~e~a~Rd~~~r~v~~fc~ 482 (704)
|+.+........+.++.+++.+. .+++..++||+ +|+++||.++|+++.+..
T Consensus 234 pt~~~~~~~~~~l~~e~~rg~g~------ilvn~~G~RF~~~y~~~~El~~rd~v~~ai~~e~~ 291 (553)
T PRK07395 234 PTALTKPGAPRFLISEAVRGEGA------HLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQ 291 (553)
T ss_pred eeeecCCCCCceeeehhccCCcE------EEECCCCCCCccccCcccccccHHHHHHHHHHHHH
Confidence 54332111112355666676654 45567788888 799999999999998753
No 24
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.85 E-value=4.1e-20 Score=209.38 Aligned_cols=244 Identities=21% Similarity=0.215 Sum_probs=155.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccc----cccccCCcccccCcchhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESN----FCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n----~~~g~gG~~~~sdg~l~~~ 294 (704)
..||+|||+|.|||.||+.+++.|. |+|+||.+..++.+.-..+.+. .......+ +...........|++++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~-~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIA-AVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCee-eeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 3699999999999999999999997 9999999765543211111000 00000000 0000000112245555555
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCc---------c-----ccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEE
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGK---------S-----HLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLL 359 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~---------~-----~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~ 359 (704)
+... ..+.++|+.++|+++.....+. . |.+......+.+.|.+.+++ .|+++++++.|++|+
T Consensus 80 ~~~~---~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~ 156 (488)
T TIGR00551 80 VVSD---ARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLL 156 (488)
T ss_pred HHHh---HHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeee
Confidence 5443 3456677888999887543321 1 11112345688899999988 699999999999998
Q ss_pred EeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEEEEecch
Q 005273 360 IENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGLRMEHPQ 426 (704)
Q Consensus 360 ~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~~~~~p~ 426 (704)
.+++++.||.+.+..+ ...+.|+.||+|||+++. +.+.++...|..+....+ .+.||+
T Consensus 157 ~~~g~v~Gv~~~~~~~-----~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~----~q~~pt 227 (488)
T TIGR00551 157 IETGRVVGVWVWNRET-----VETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEF----NQFHPT 227 (488)
T ss_pred ccCCEEEEEEEEECCc-----EEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcc----eEEEee
Confidence 8888999998875421 247899999999999864 345577777777654433 334554
Q ss_pred hhhcccccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhhc
Q 005273 427 ELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 427 ~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc~ 482 (704)
.+...-.-..+.++.++|.+. .+++..++||++ |+++||.++|+++.+..
T Consensus 228 ~~~~~~~~~~l~~~~~~g~g~------~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~ 283 (488)
T TIGR00551 228 ALYKPRARYFLITEAVRGEGA------YLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMK 283 (488)
T ss_pred EecCCCCcceeeehhhcCCce------EEECCCCCChhhccCcccccCchHHHHHHHHHHHH
Confidence 332211112345566666654 355566778887 89999999999998743
No 25
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.85 E-value=9.4e-20 Score=207.26 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=155.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc-ccccccchhHHHHHHhhcccccc----ccccCCcccccCcchh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA-VEQRGRDIGALVVRRMLEMESNF----CFGEGGAGTWSDGKLV 292 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~-~~~~~~~~~~~~~~~~l~~~~n~----~~g~gG~~~~sdg~l~ 292 (704)
...||+|||+|.|||.||+.++ |.+|+|+||... .++.+....+.+.. ......+. ...........|.+++
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~-~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAA-ALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhcccc-ccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 3579999999999999999986 579999999886 23322111111100 01110000 0000001122455555
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCccc--------------c-CCCChHHHHHHHHHHHHHC-CCEEEeCeEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKSH--------------L-GTDRLIPLLRNFRQHLQRL-GVTIKFGTRVD 356 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~--------------~-g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~ 356 (704)
..+... ..+.++||.++|+++.....+... . +......+++.|.+.+++. ||+++.++.|+
T Consensus 85 ~~~~~~---s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~ 161 (513)
T PRK07512 85 ALITAE---APAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEAR 161 (513)
T ss_pred HHHHHH---HHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChh
Confidence 555443 344667888899988654333211 1 1123456888898888875 89999999999
Q ss_pred EEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEe
Q 005273 357 DLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRME 423 (704)
Q Consensus 357 ~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~ 423 (704)
+|+.++++|+||.+.+..+ ...+.|+.||+|||+++ .+.+.|+...|..+.+..+ .+.
T Consensus 162 ~Li~~~g~v~Gv~~~~~~~-----~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~----~q~ 232 (513)
T PRK07512 162 RLLVDDGAVAGVLAATAGG-----PVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEF----VQF 232 (513)
T ss_pred heeecCCEEEEEEEEeCCe-----EEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcc----eEE
Confidence 9988888999998865321 24689999999999964 3567788888888766543 334
Q ss_pred cchhhhcccccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhh
Q 005273 424 HPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 424 ~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc 481 (704)
||+.+........+.++.++|.+. .+++..++||++ |+++||.++|+++...
T Consensus 233 ~Pt~~~~~~~~~~l~~~~~rg~g~------~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~ 290 (513)
T PRK07512 233 HPTAIDIGRDPAPLATEALRGEGA------ILINEDGERFMADIHPGAELAPRDVVARAVFAEI 290 (513)
T ss_pred EeeeecCCCCCcceeehhhhCCce------EEECCCCCChhhhcCCccccCcHHHHHHHHHHHH
Confidence 554332211113455666676654 445667888885 7999999999999773
No 26
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.85 E-value=4.7e-20 Score=209.55 Aligned_cols=252 Identities=21% Similarity=0.184 Sum_probs=156.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccc----ccccCCcccccCcchhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNF----CFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~----~~g~gG~~~~sdg~l~~~ 294 (704)
..||+|||+|.|||.||+.+++ |.+|+|+||....++.+.-..+.+. .......+. ...........|.+++..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~-~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIA-AAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccce-ecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 4699999999999999999976 9999999999876554321111110 000010000 000000111245555555
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCc---------c-----ccC-CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEE
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGK---------S-----HLG-TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLL 359 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~---------~-----~~g-~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~ 359 (704)
+... ..+.++|+.++|+++....++. . |.+ ......+++.|.+.++ .||++++++.|++|+
T Consensus 81 ~~~~---s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li 156 (510)
T PRK08071 81 LVEE---GPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLI 156 (510)
T ss_pred HHHH---HHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhhee
Confidence 5443 3445667888999887432221 1 111 1123457888888776 699999999999998
Q ss_pred EeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEEEEecch
Q 005273 360 IENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGLRMEHPQ 426 (704)
Q Consensus 360 ~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~~~~~p~ 426 (704)
.++++|.||.+.+.++ +...+.|+.||+|||+++. +.+.++...|..+....+ .+.||+
T Consensus 157 ~~~g~v~Gv~~~~~~g----~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~----~q~~pt 228 (510)
T PRK08071 157 IENGRCIGVLTKDSEG----KLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEF----IQFHPT 228 (510)
T ss_pred ecCCEEEEEEEEECCC----cEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcc----eeEeee
Confidence 8889999998866422 2357899999999999763 456777788887765433 333554
Q ss_pred hhhcccccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhhccCCceEEEc
Q 005273 427 ELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFCMCPGGQIVLT 491 (704)
Q Consensus 427 ~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc~~~gG~vv~~ 491 (704)
.+........++++.++|.+. .+++..++||++ +++|||.++|+++.+. ..++.++++
T Consensus 229 ~~~~~~~~~~li~e~~rg~g~------~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~-~~~~~v~ld 292 (510)
T PRK08071 229 MLYANGRCVGLVSEAVRGEGA------VLINEDGRRFMMGIHPLADLAPRDVVARAIHEEL-LSGEKVYLN 292 (510)
T ss_pred EecCCCccceeechhhcCCce------EEECCCCCCCccccCccccCCCHHHHHHHHHHHH-HcCCeEEEe
Confidence 322211111245566666654 345566777776 6899999999998763 223344443
No 27
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.84 E-value=1.6e-19 Score=206.77 Aligned_cols=250 Identities=18% Similarity=0.169 Sum_probs=158.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccc----ccccCCcccccCcchhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNF----CFGEGGAGTWSDGKLVT 293 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~----~~g~gG~~~~sdg~l~~ 293 (704)
...||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+. .......+. ...........|.+++.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~-a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIA-AVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhcccee-eccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 3579999999999999999999999999999999876543221111000 000000000 00000011224555555
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCcc--------------cc-CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEE
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HL-GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDL 358 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~-g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i 358 (704)
.+... ..+.++|+.++|+++....++.. |. +......+.+.|.+.+++.||++++++.|++|
T Consensus 94 ~~~~~---s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~L 170 (541)
T PRK07804 94 SLVAE---GPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDL 170 (541)
T ss_pred HHHHH---HHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeee
Confidence 54443 33456778889998865433221 11 11134568899999999999999999999999
Q ss_pred EEeC-CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEec
Q 005273 359 LIEN-ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 359 ~~~~-g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
+.++ ++|.||.+.+...........+.|+.||+|||+++ .+.+.|+...|..+.+..+ .+.|
T Consensus 171 i~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~----~q~~ 246 (541)
T PRK07804 171 LTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEF----VQFH 246 (541)
T ss_pred EEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcc----eeEe
Confidence 8875 69999987631100001124789999999999965 3566788888888766543 3345
Q ss_pred chhhhccc---ccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhhh
Q 005273 425 PQELINSI---QYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 425 p~~~~~~~---~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~fc 481 (704)
|+.+.... ....+.++.+++.+. .+++..++||++ |+++||.++|+++.+.
T Consensus 247 pt~~~~~~~~~~~~~l~~~~~r~~g~------~lvn~~G~RF~~~~~~~~E~a~rd~v~~ai~~~~ 306 (541)
T PRK07804 247 PTVLFLGPAAGGQRPLISEAVRGEGA------ILVDAQGNRFMAGVHPLADLAPRDVVAKAIDRRM 306 (541)
T ss_pred cceecCCcccccccceechhhcCCce------EEECCCCCCCccccCcccccCcHHHHHHHHHHHH
Confidence 54332111 112345666666654 445567888885 8999999999999874
No 28
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.84 E-value=1.2e-19 Score=209.52 Aligned_cols=242 Identities=21% Similarity=0.237 Sum_probs=150.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhh--ccccccc--c--ccCCcccccCcchhhh
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML--EMESNFC--F--GEGGAGTWSDGKLVTR 294 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l--~~~~n~~--~--g~gG~~~~sdg~l~~~ 294 (704)
||+|||+|+|||+||+.+++.|.+|+|+||....++.+....+.+..... ....... + .........+.+++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 79999999999999999999999999999987654332111100000000 0000000 0 0000011234444444
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI 360 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~ 360 (704)
+..+. .+.++|+.++|+++....++.. |........+...|.+.+++.|+++++++.|++|+.
T Consensus 81 ~~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~ 157 (566)
T TIGR01812 81 MCQEA---PKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIH 157 (566)
T ss_pred HHHHH---HHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEE
Confidence 44432 3456678889998865433311 111122345788888989889999999999999998
Q ss_pred eCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEecchh
Q 005273 361 ENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEHPQE 427 (704)
Q Consensus 361 ~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~p~~ 427 (704)
++++|.||.+.+..++ +...+.|+.||+|||+++ .+.+.|+...|..+....+ .+.||..
T Consensus 158 ~~g~v~Gv~~~~~~~g---~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~----~q~~p~~ 230 (566)
T TIGR01812 158 DDGRVRGVVAYDLKTG---EIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEF----VQFHPTG 230 (566)
T ss_pred eCCEEEEEEEEECCCC---cEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcc----eEEeeee
Confidence 8899999987542211 234689999999999975 3455666666766654332 2334432
Q ss_pred hhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 428 LINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 428 ~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
+.. .+.+.++.+++.+. .+++..++||++ |+++||.+.++++.+.
T Consensus 231 ~~~---~~~~~~e~~~~~g~------~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~ 282 (566)
T TIGR01812 231 LYP---SGILITEGCRGEGG------YLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEI 282 (566)
T ss_pred eCC---CCcEEeccccCCce------EEECCCCCCCCcccCccccccCchhHHHHHHHHHH
Confidence 211 12344555555543 456677888886 6899999999998774
No 29
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.84 E-value=1.2e-19 Score=209.24 Aligned_cols=244 Identities=18% Similarity=0.207 Sum_probs=154.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccccccc----cccCCcccccCcchh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFC----FGEGGAGTWSDGKLV 292 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~----~g~gG~~~~sdg~l~ 292 (704)
..||+|||+|.|||+||+.+++. |.+|+|+||....++.+....+.+.. ....+.+.. ..........|.+++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~-~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAA-VAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhh-hcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 47999999999999999999987 47999999997766543222211111 111111100 000011123455566
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDD 357 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~ 357 (704)
..+..+. .+.++||.++|+++....+++. |........+++.|.+.+.+. +++++.++.+++
T Consensus 83 ~~~~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 159 (582)
T PRK09231 83 EYFVHHC---PTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLD 159 (582)
T ss_pred HHHHHHH---HHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEE
Confidence 5555443 3456678889999875433210 111112345778888887775 799999999999
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEec
Q 005273 358 LLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 358 i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
|+.++++|.||.+.+..+ +....+.|+.||+|||+++ .+.+.|+.+.|..+....+ .+.|
T Consensus 160 Li~~~g~v~Gv~~~~~~~---g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~----~q~~ 232 (582)
T PRK09231 160 ILVDDGHVRGLVAMNMME---GTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEF----VQYH 232 (582)
T ss_pred EEEeCCEEEEEEEEEcCC---CcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccc----eeee
Confidence 999899999988643211 1235789999999999866 2455677777776654433 3446
Q ss_pred chhhhcccccccchhhhcccCCCCccccccceecccCCCCC------------------CCCccccchhhhhhhhc
Q 005273 425 PQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------------------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 425 p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------------------e~a~Rd~~~r~v~~fc~ 482 (704)
|+... ..+.+.++.++|.+.+ +++..++||++ |+++||.++|+++....
T Consensus 233 Pt~~~---~~~~l~~e~~rg~g~~------lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~ 299 (582)
T PRK09231 233 PTGLP---GSGILMTEGCRGEGGI------LVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWR 299 (582)
T ss_pred cceeC---CCCceeeecccCCCeE------EECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 64332 1234556667776653 34455556553 78999999999987753
No 30
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.84 E-value=1.7e-19 Score=208.34 Aligned_cols=244 Identities=21% Similarity=0.228 Sum_probs=155.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC---CcEEEEEeCccccccccchhHHHHHHhhcc--cccc----ccccCCcccccCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG---ADVTLIERGQAVEQRGRDIGALVVRRMLEM--ESNF----CFGEGGAGTWSDG 289 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g---~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~--~~n~----~~g~gG~~~~sdg 289 (704)
..||+|||+|.|||+||+.+++.| .+|+|+||....++.+...++.+.. .+.. ..+. ...........|+
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a-~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAA-VLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccce-eeccccCCCHHHHHHHHHHhhcccCCH
Confidence 479999999999999999999998 8999999998765433221111100 0110 0000 0000001122455
Q ss_pred chhhhhccCchhHHHHHHHHHHcCCCceeecCCcc---------c-----cCCCChHHHHHHHHHHHHH-CCCEEEeCeE
Q 005273 290 KLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKS---------H-----LGTDRLIPLLRNFRQHLQR-LGVTIKFGTR 354 (704)
Q Consensus 290 ~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~---------~-----~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~ 354 (704)
+++..+.... .+.++|+.++|+++.....++. + ........+++.|.+.+.+ .||++++++.
T Consensus 84 ~lv~~~~~~s---~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~ 160 (577)
T PRK06069 84 DAVEVFVREA---PEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHF 160 (577)
T ss_pred HHHHHHHHHH---HHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCE
Confidence 5555554443 3456778889998865433321 1 1111234578888888876 5999999999
Q ss_pred EEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEE
Q 005273 355 VDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLR 421 (704)
Q Consensus 355 V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~ 421 (704)
+++++.++++|.||.+.+..++ +...+.|+.||+|||+++ .+.+.|+.+.|..+....+ .
T Consensus 161 v~~Li~~~g~v~Gv~~~~~~~g---~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~----~ 233 (577)
T PRK06069 161 VTSLIVENGVFKGVTAIDLKRG---EFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEF----V 233 (577)
T ss_pred EEEEEEECCEEEEEEEEEcCCC---eEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcc----e
Confidence 9999988899999987542211 234689999999999974 2456677777777655433 3
Q ss_pred EecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhhc
Q 005273 422 MEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 422 ~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc~ 482 (704)
+.||..+.. .+.+.++.++|.+. .+++..++||++ |+++||.++|+++.+..
T Consensus 234 q~~pt~~~~---~g~l~~e~~~g~g~------~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~ 292 (577)
T PRK06069 234 QFHPTGLVP---SGILITEAARGEGG------YLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIM 292 (577)
T ss_pred eEeeeeeCC---CCcEEEeeccCCCe------EEECCCCCCcccccCccccccCCccHHHHHHHHHHH
Confidence 345533221 12345566666654 455667788876 68999999999998754
No 31
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.84 E-value=1.9e-19 Score=207.06 Aligned_cols=244 Identities=21% Similarity=0.218 Sum_probs=154.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccccccc----cccCCcccccCcchh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFC----FGEGGAGTWSDGKLV 292 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~----~g~gG~~~~sdg~l~ 292 (704)
..||+|||+|.|||+||+.+++. |.+|+|+||....++.+...++... .......+.. ..........|.+++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~-~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSA-AVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchh-hhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 46999999999999999999987 5799999999876654322211111 0111111100 000011123456666
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc--------------ccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS--------------HLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDD 357 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~--------------~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~ 357 (704)
..+.... .+.++||.++|+++....+++. |........+++.|.+.+.+. +++++.++.+++
T Consensus 82 ~~l~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 158 (580)
T TIGR01176 82 EYFVAEA---PKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD 158 (580)
T ss_pred HHHHHHh---HHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence 6655543 3455677889999876543321 111113456888898888775 899999999999
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEEEEec
Q 005273 358 LLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 358 i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
|+.++++|.||...+..+ +....+.|+.||+|||+++. +...|+.+.|..+....+ .+.|
T Consensus 159 Li~~~g~v~Gv~~~~~~~---g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~----~q~h 231 (580)
T TIGR01176 159 LLVDDGRVCGLVAIEMAE---GRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEF----VQYH 231 (580)
T ss_pred EEeeCCEEEEEEEEEcCC---CcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcc----eEEE
Confidence 999899999998754211 12457899999999999763 445566666666554332 3346
Q ss_pred chhhhcccccccchhhhcccCCCCccccccceecccCCCC------------------CCCCccccchhhhhhhhc
Q 005273 425 PQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDG------------------DALSGVVTTNRSCYSFCM 482 (704)
Q Consensus 425 p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~------------------~e~a~Rd~~~r~v~~fc~ 482 (704)
|+.+. ..+.+.++.++|.+.+.+ +..++||+ .+++|||.++|+++.++.
T Consensus 232 Pt~~~---~~~~l~~e~~rg~g~~lv------n~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~ 298 (580)
T TIGR01176 232 PTGLP---GTGILMTEGCRGEGGILV------NKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHN 298 (580)
T ss_pred ccccC---CCceEEeecccCCceEEE------CCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHH
Confidence 65432 123456677777765443 33344433 378999999999987743
No 32
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.84 E-value=2.6e-19 Score=206.68 Aligned_cols=246 Identities=22% Similarity=0.220 Sum_probs=151.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc-ccccc--cc--ccCCcccccCcchhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNF--CF--GEGGAGTWSDGKLVT 293 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~--~~--g~gG~~~~sdg~l~~ 293 (704)
..||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.+....-+ ..... .+ .........+.+++.
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 57999999999999999999999999999999866544322111100000000 00000 00 000011223444444
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCcc----ccC-----------------CCChHHHHHHHHHHHHHCCCEEEeC
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGKS----HLG-----------------TDRLIPLLRNFRQHLQRLGVTIKFG 352 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~----~~g-----------------~~~~~~l~~~L~~~l~~~Gv~i~~~ 352 (704)
.+... ..+.++|+.++|+++....++.. +.+ ......+++.|.+.+.+.|++++++
T Consensus 92 ~~~~~---a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~ 168 (591)
T PRK07057 92 FMCRE---APNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVE 168 (591)
T ss_pred HHHHH---HHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeC
Confidence 44333 33456677889998875433211 111 1123458888988888899999999
Q ss_pred eEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceee
Q 005273 353 TRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAV 418 (704)
Q Consensus 353 t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~av 418 (704)
+.+++|+.+ +++|.||.+.+..++ ....+.|+.||+|||+++. +.+.|+...|..+....
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~~~~g---~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me--- 242 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALEMETG---DVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDME--- 242 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEEcCCC---eEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcc---
Confidence 999999876 578999988543211 2357899999999999753 34455555665554332
Q ss_pred EEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhhcc
Q 005273 419 GLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFCMC 483 (704)
Q Consensus 419 G~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc~~ 483 (704)
+.+.||+.... .+.+.++.+++.+. .+++..++||++ ++++||.++|.++.++..
T Consensus 243 -~~q~~pt~~~~---~~~l~~e~~rg~g~------ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~ 304 (591)
T PRK07057 243 -FWQFHPTGVAG---AGVLITEGVRGEGG------ILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKE 304 (591)
T ss_pred -cccccCCccCC---CceEEeecccCCce------EEECCCCCCchhhcCccccccccHHHHHHHHHHHHHh
Confidence 22335533221 12345566666654 344566777775 689999999999987543
No 33
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.83 E-value=8.7e-20 Score=211.84 Aligned_cols=232 Identities=20% Similarity=0.230 Sum_probs=141.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc--cccccc--c--ccCCcccccCcchh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE--MESNFC--F--GEGGAGTWSDGKLV 292 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~--~~~n~~--~--g~gG~~~~sdg~l~ 292 (704)
..||+|||+|.|||+||+.+++.|.+|+|+||....++.+....+......-+ ...++. + .........|.+++
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v 87 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMA 87 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHH
Confidence 47999999999999999999999999999999976543221111100000000 000000 0 00000112334444
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCc---------c-----ccCCCChHHHHHHHHHHHHHC--------C----
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGK---------S-----HLGTDRLIPLLRNFRQHLQRL--------G---- 346 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~---------~-----~~g~~~~~~l~~~L~~~l~~~--------G---- 346 (704)
..+... ..+.++|+.++|+++....+++ . |.+......+++.|.+.+++. |
T Consensus 88 ~~~~~~---s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~ 164 (626)
T PRK07803 88 ELHAKE---APDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEA 164 (626)
T ss_pred HHHHHH---hHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcC
Confidence 433333 2334567888999987543331 1 111223456888888888776 7
Q ss_pred -CEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCccc
Q 005273 347 -VTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLV 412 (704)
Q Consensus 347 -v~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~ 412 (704)
|++++++.|++|+.++++|.||...+..+ ++...+.|+.||+|||+++ .+.+.|+...|..+.
T Consensus 165 ~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~---g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~ 241 (626)
T PRK07803 165 RIKVFAECTITELLKDGGRIAGAFGYWRES---GRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLI 241 (626)
T ss_pred ceEEEeCCEEEEEEEECCEEEEEEEEECCC---CeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEe
Confidence 99999999999998889999987654221 1235789999999999853 356778888888776
Q ss_pred ccceeeEEEEecchhhhcc-cccccchhhhcccCCCCccccccceecccCCCCCC
Q 005273 413 PKDFAVGLRMEHPQELINS-IQYSELATEVQKGRGKVPVADYKVAKYVSGEDGDA 466 (704)
Q Consensus 413 ~~~~avG~~~~~p~~~~~~-~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e 466 (704)
...+ .+.||+.+... ...+.++++.+||.+.+ +++..++||+++
T Consensus 242 ~me~----~q~~Pt~~~~~~~~~~~li~e~~rg~g~i------lvN~~G~RF~~~ 286 (626)
T PRK07803 242 NMEF----VQFHPTGMVWPPSVKGILVTEGVRGDGGV------LKNSEGKRFMFD 286 (626)
T ss_pred CCcc----eeecccccccCCCcCceEEeeeccCCceE------EECCCCCCcccc
Confidence 5433 34466543211 11234566777776653 445566777653
No 34
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.83 E-value=2e-19 Score=202.58 Aligned_cols=245 Identities=22% Similarity=0.221 Sum_probs=146.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccc----cccccCCcccccCcchhhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESN----FCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n----~~~g~gG~~~~sdg~l~~~~ 295 (704)
+||+|||+|+|||.||+.+++.|.+|+|+||....+......++. ...+....+ +...........|++++..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi--~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGI--AFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCc--ccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 699999999999999999999999999999985321110000000 000000000 00000001112344555444
Q ss_pred ccCchhHHHHHHHHHHcCCCceee--cCCcccc-----CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEE
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANIL--VDGKSHL-----GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGV 368 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~--~~g~~~~-----g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV 368 (704)
..+ ..+.++|+.++|+++... ..++.+. .......+++.|.+.+++.|++++++ .++++..++++++||
T Consensus 80 ~~~---~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv 155 (466)
T PRK08401 80 ISK---SSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGV 155 (466)
T ss_pred HHH---HHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEE
Confidence 333 345667888899987642 2232221 12234568899999999999999876 788988778899998
Q ss_pred EEcCCCCCCCCceeEEecCeEEEcCCCChHH-------------HHHHHHhCCCcccccceeeEEEEecchhhhcccccc
Q 005273 369 KVSDSKDNSQSDIQKLGFDAVILAVGHSARD-------------IYEMLVSHNINLVPKDFAVGLRMEHPQELINSIQYS 435 (704)
Q Consensus 369 ~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~-------------~~~~l~~~gi~l~~~~~avG~~~~~p~~~~~~~~~~ 435 (704)
.+. + ..+.++.||+|||+++.. ...+....|..+... .+.+.||..+... ...
T Consensus 156 ~~~-g--------~~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~m----e~~q~~p~~~~~~-~~~ 221 (466)
T PRK08401 156 FLD-G--------ELLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDL----EFVQFHPTGFIGK-RGT 221 (466)
T ss_pred EEC-C--------EEEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCc----eeeEEecccccCC-CCC
Confidence 873 2 368999999999998753 222333333333221 2233355432211 112
Q ss_pred cchhhhcccCCCCccccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEc
Q 005273 436 ELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLT 491 (704)
Q Consensus 436 ~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~ 491 (704)
.+.++.+++.+. .+++..++||++|+++||.+++.++.+. ..++.++++
T Consensus 222 ~l~~e~~r~~g~------ilvN~~G~RF~~E~~~rd~v~~ai~~~~-~~~~~v~ld 270 (466)
T PRK08401 222 YLISEAVRGAGA------KLVTGDGERFVNELETRDIVARAIYRKM-QEGKGVFLD 270 (466)
T ss_pred eEEeeecccCce------EEECCCCCChhcccccHHHHHHHHHHHH-hcCCEEEEe
Confidence 344555555543 4567889999999999999999998763 333334443
No 35
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.83 E-value=2.2e-19 Score=207.27 Aligned_cols=243 Identities=19% Similarity=0.211 Sum_probs=152.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc-cccccc--c--ccCCcccccCcchhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNFC--F--GEGGAGTWSDGKLVT 293 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~~--~--g~gG~~~~sdg~l~~ 293 (704)
..||+|||+|.|||.||+.+++. .+|+|+||....++.+....+.+...... ...... + ...+.....|.+++.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 46999999999999999999986 89999999876544322111111000000 000000 0 000011123455555
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCcc---------------------ccCCCChHHHHHHHHHHHHHCCCEEEeC
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGKS---------------------HLGTDRLIPLLRNFRQHLQRLGVTIKFG 352 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~---------------------~~g~~~~~~l~~~L~~~l~~~Gv~i~~~ 352 (704)
.+..+ ..+.++|+.++|+++....++.. |........+++.|.+.+++.||+++++
T Consensus 84 ~~~~~---~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 160 (583)
T PRK08205 84 IMAKE---AIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNE 160 (583)
T ss_pred HHHHH---HHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 44433 34456788899999865433211 1111123568889999999999999999
Q ss_pred eEEEEEEEeC----CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccc
Q 005273 353 TRVDDLLIEN----ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKD 415 (704)
Q Consensus 353 t~V~~i~~~~----g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~ 415 (704)
+.|++|+.++ ++|.||.+.+..+ ++...+.|+.||||||+++. +.+.|+.+.|..+....
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~~~~---g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me 237 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYELAT---GEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDME 237 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEEcCC---CeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCcc
Confidence 9999998776 7999998753211 12346899999999999762 45566667776665443
Q ss_pred eeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 416 FAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 416 ~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
+ .+.||+.+.. .+.+.++.+++.+. .+++..++||++ |+++||.+.|+++.+.
T Consensus 238 ~----~q~~Pt~~~~---~~~l~~e~~rg~g~------ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~ 297 (583)
T PRK08205 238 F----HQFHPTGLAG---LGILISEAARGEGG------ILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEV 297 (583)
T ss_pred c----eEEecceecC---CceEeeecccCCce------EEECCCCCCCccccCccccccccHHHHHHHHHHHH
Confidence 2 3345543321 13345566666654 455667788876 6899999999998764
No 36
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.83 E-value=8.3e-19 Score=202.47 Aligned_cols=246 Identities=20% Similarity=0.184 Sum_probs=151.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhc---ccccc----ccccCCcccccCcch
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLE---MESNF----CFGEGGAGTWSDGKL 291 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~---~~~n~----~~g~gG~~~~sdg~l 291 (704)
+.||+|||+|.|||.||+.+++.|.+|+|+||....++.+...++.+. .... ...+. ...........+.++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~-a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGIN-GAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeE-EecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 359999999999999999999999999999999875543221111000 0000 00000 000000011234455
Q ss_pred hhhhccCchhHHHHHHHHHHcCCCceeecCC---------cc-----ccCCCChHHHHHHHHHHHHHCC----CEEEeCe
Q 005273 292 VTRIGRNSNSVLAVMNTLVHFGAPANILVDG---------KS-----HLGTDRLIPLLRNFRQHLQRLG----VTIKFGT 353 (704)
Q Consensus 292 ~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g---------~~-----~~g~~~~~~l~~~L~~~l~~~G----v~i~~~t 353 (704)
+..+.... .+.++|+.++|+++....++ +. +.+......++..|.+.+++.+ |+++.++
T Consensus 82 v~~~~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~ 158 (589)
T PRK08641 82 VKAMCEAA---PGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGW 158 (589)
T ss_pred HHHHHHHH---HHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeE
Confidence 55544433 34567788899998643322 11 1111234457788888777653 8899999
Q ss_pred EEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeE
Q 005273 354 RVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVG 419 (704)
Q Consensus 354 ~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG 419 (704)
.+++++.+ +++|+||.+.+..++ +...+.|+.||||||+++. +.+.|+.+.|..+....|
T Consensus 159 ~~~~Li~~~~g~v~Gv~~~~~~~g---~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef--- 232 (589)
T PRK08641 159 EFLGAVLDDEGVCRGIVAQDLFTM---EIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEF--- 232 (589)
T ss_pred EEEEEEECCCCEEEEEEEEECCCC---cEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCcc---
Confidence 99999885 689999998764221 2356899999999999763 556677777777655433
Q ss_pred EEEecchhhhcccccccchhhhcccCCCCccccccceecccCC--CCC-------CCCccccchhhhhhhh
Q 005273 420 LRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGE--DGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 420 ~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~--~~~-------e~a~Rd~~~r~v~~fc 481 (704)
.+.||+.+.... ...+.++.++|.|.... ++..++| |++ ++++||.++|+++.++
T Consensus 233 -~q~hPt~~~~~~-~~~l~~e~~rg~G~~l~-----~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~ 296 (589)
T PRK08641 233 -IQIHPTAIPGDD-KLRLMSESARGEGGRVW-----TYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVC 296 (589)
T ss_pred -EEEeeeeecCCC-cceEeeeeeccCCcEEE-----ECCCCCCcccccccCCcccccCChhHHHHHHHHHH
Confidence 445665432210 11356777777764211 2334556 333 5999999999999865
No 37
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.82 E-value=2.3e-19 Score=205.80 Aligned_cols=244 Identities=21% Similarity=0.247 Sum_probs=149.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc-ccccccchhHHHHHHhhccccccc--c--ccCCcccccCcchhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA-VEQRGRDIGALVVRRMLEMESNFC--F--GEGGAGTWSDGKLVT 293 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~-~~~~~~~~~~~~~~~~l~~~~n~~--~--g~gG~~~~sdg~l~~ 293 (704)
..||+|||+|.|||.||+.+ +.|.+|+|+||... .++.+....+.+ ........... + .........|.+++.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~-~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGY-NAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceE-EEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 57999999999999999999 89999999999864 222211100000 00000000000 0 000001123455555
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCC---------cc-----ccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEE
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDG---------KS-----HLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLL 359 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g---------~~-----~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~ 359 (704)
.+... ..+.++|+.++|+++....++ +. +.+......++..|.+.+++.||++++++.+++|+
T Consensus 85 ~~~~~---s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li 161 (543)
T PRK06263 85 ILVKE---APKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLI 161 (543)
T ss_pred HHHHH---HHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeE
Confidence 44443 334566788899988643322 11 11111245688889998988999999999999998
Q ss_pred EeCCE-EEEEEEcC-CCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEEEEec
Q 005273 360 IENAR-IVGVKVSD-SKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 360 ~~~g~-v~GV~~~~-~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
.++++ |+||.+.+ ..+ ....+.|+.||+|||+++ .+.+.|+...|..+....+ .+.+
T Consensus 162 ~~~~~~v~Gv~~~~~~~g----~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~----~q~~ 233 (543)
T PRK06263 162 VDENREVIGAIFLDLRNG----EIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEM----VQFH 233 (543)
T ss_pred EeCCcEEEEEEEEECCCC----cEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccc----eeEe
Confidence 87765 99988754 222 235789999999999964 3566777777777755433 2234
Q ss_pred chhhhccc-ccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 425 PQELINSI-QYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 425 p~~~~~~~-~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
|..+.... ..+.+.++.+++.+. .+++..++||++ |+++||.+.+.++.+.
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~g~------~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~ 292 (543)
T PRK06263 234 PTGMVYPYSGRGILVTEAVRGEGG------ILYNKNGERFMKRYDPERMELSTRDVVARAIYTEI 292 (543)
T ss_pred cceeccCCCCCceEEeeeecCCcc------EEECCCCCCcccccCcccccccchhHHHHHHHHHH
Confidence 43221110 112333444444443 455677888876 8899999999998763
No 38
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.82 E-value=5.6e-19 Score=202.08 Aligned_cols=245 Identities=20% Similarity=0.195 Sum_probs=151.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccc----ccccCCcccccCcchhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNF----CFGEGGAGTWSDGKLVT 293 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~----~~g~gG~~~~sdg~l~~ 293 (704)
...||+|||+|.|||.||+.+++. .+|+|+||....++.+....+.+ ........+. ...........|.+++.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi-~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGI-AAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCe-eeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 357999999999999999999986 89999999987654322111100 0000000000 00000001123444554
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecC--C-----------cc-----ccCCCChHHHHHHHHHHHHHC-CCEEEeCeE
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVD--G-----------KS-----HLGTDRLIPLLRNFRQHLQRL-GVTIKFGTR 354 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~--g-----------~~-----~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~ 354 (704)
.+... ..+.++|+.++|+++..... + +. |.+......+...|.+.+++. ||++++++.
T Consensus 85 ~~~~~---~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~ 161 (536)
T PRK09077 85 FIAEN---AREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHN 161 (536)
T ss_pred HHHHH---HHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEE
Confidence 44433 33456677889998865322 1 10 111112345778888888775 899999999
Q ss_pred EEEEEEeC------CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccc
Q 005273 355 VDDLLIEN------ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKD 415 (704)
Q Consensus 355 V~~i~~~~------g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~ 415 (704)
+++++.++ ++|.||.+.+..++ +...+.|+.||+|||++++ +.+.|+...|..+....
T Consensus 162 v~~Li~~~~~~~~~g~v~Gv~~~~~~~g---~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me 238 (536)
T PRK09077 162 AIDLITSDKLGLPGRRVVGAYVLNRNKE---RVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANME 238 (536)
T ss_pred eeeeeecccccCCCCEEEEEEEEECCCC---cEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCcc
Confidence 99998764 79999988653221 2457899999999999652 45567777777665443
Q ss_pred eeeEEEEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCC------CCCccccchhhhhhh
Q 005273 416 FAVGLRMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD------ALSGVVTTNRSCYSF 480 (704)
Q Consensus 416 ~avG~~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~------e~a~Rd~~~r~v~~f 480 (704)
+ .+.||+.+........+.++.+++.+. .+++..++||++ +++|||.++|+++.+
T Consensus 239 ~----~q~~pt~~~~~~~~~~l~~e~~rg~g~------~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~ 299 (536)
T PRK09077 239 F----NQFHPTCLYHPQARSFLITEALRGEGA------YLKLPDGTRFMPDFDERAELAPRDIVARAIDHE 299 (536)
T ss_pred c----eeEecceecCCCCCceeecHHHcCCCC------EEECCCCCCcccccCcccccCchhHHHHHHHHH
Confidence 2 344554332111123355666777665 345566777774 689999999999876
No 39
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.81 E-value=1.6e-18 Score=197.07 Aligned_cols=248 Identities=17% Similarity=0.209 Sum_probs=146.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc-hhHHH------HHHhhccccccccc---cCCccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD-IGALV------VRRMLEMESNFCFG---EGGAGTWS 287 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~-~~~~~------~~~~l~~~~n~~~g---~gG~~~~s 287 (704)
...||||||+|.+|++||+.+++.|.+|+|+||....++.+.. .+.++ ........+...+- ..+.....
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 3679999999999999999999999999999999887764321 11111 00000000000000 00111234
Q ss_pred CcchhhhhccCchhHHHHHHHHHHcCCCceeec--CCc-------cccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEE
Q 005273 288 DGKLVTRIGRNSNSVLAVMNTLVHFGAPANILV--DGK-------SHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDL 358 (704)
Q Consensus 288 dg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~--~g~-------~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i 358 (704)
+++++..+.++.. ..++|+.+.|+++.... .+. +..+......+++.|.+.+++.|++++++++|++|
T Consensus 140 d~~l~~~~~~~s~---~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l 216 (506)
T PRK06481 140 DKALLRYFVDNSA---SAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKI 216 (506)
T ss_pred CHHHHHHHHhccH---HHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEE
Confidence 5555555544433 35667788888765321 111 11122223457889999999999999999999999
Q ss_pred EEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc-----ccceeeE------EEEecchh
Q 005273 359 LIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV-----PKDFAVG------LRMEHPQE 427 (704)
Q Consensus 359 ~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~-----~~~~avG------~~~~~p~~ 427 (704)
..++++|+||.+...++ +...+.|+.||+|+|+++.+ .+|+.++..... ..+...| ........
T Consensus 217 ~~~~g~V~Gv~~~~~~g----~~~~i~a~~VVlAtGG~~~n-~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~aGA~~~ 291 (506)
T PRK06481 217 TEKDGKVTGVKVKINGK----ETKTISSKAVVVTTGGFGAN-KDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGGTTV 291 (506)
T ss_pred EecCCEEEEEEEEeCCC----eEEEEecCeEEEeCCCcccC-HHHHHHhCccccCCccCCCCCCChHHHHHHHHcCCCcc
Confidence 88888999998864321 13579999999999998764 244444432211 0111111 11111111
Q ss_pred hhcccccccc--------hhhhcccCCCCccccccceecccCCCCCCCCccccchhhhhh
Q 005273 428 LINSIQYSEL--------ATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYS 479 (704)
Q Consensus 428 ~~~~~~~~~l--------~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~ 479 (704)
.++.+++.+. ..+.+++ ....+++..++||++|+.+|+.+++.++.
T Consensus 292 ~~~~~~~~p~~~~~~~~~~~~~~~~------~~~i~Vn~~G~RF~nE~~~~~~~~~~~~~ 345 (506)
T PRK06481 292 DMDQIQIHPTVQQSKSYLIGEAVRG------EGAILVNQKGKRFGNELDTRDKVSAAINK 345 (506)
T ss_pred CchhhhhCCCccCCCcceehhhccC------CceEEECCCCCCCCCCCccHHHHHHHHHh
Confidence 1222222111 1111111 12356778899999999999988877654
No 40
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.81 E-value=1.6e-19 Score=182.43 Aligned_cols=247 Identities=22% Similarity=0.277 Sum_probs=159.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHH-------HHHHhhcccccccccc---CCcccccCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGAL-------VVRRMLEMESNFCFGE---GGAGTWSDGK 290 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~-------~~~~~l~~~~n~~~g~---gG~~~~sdg~ 290 (704)
.|||||+|.|||+|+..+...|-.|+|+|+....|+.+...... .+....-.++.-.|-. ..+..-..++
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 69999999999999999999988899999999888754221110 0000000011100100 0011123456
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeec--CCc----cccCCCC---hHHHHHHHHHHHHHC------CCEEEeCeEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILV--DGK----SHLGTDR---LIPLLRNFRQHLQRL------GVTIKFGTRV 355 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~--~g~----~~~g~~~---~~~l~~~L~~~l~~~------Gv~i~~~t~V 355 (704)
+...+..++....+|++. ++++..+.+. .|+ .|.++.. ..+++..|..++++. -++|..+++|
T Consensus 91 Lm~~La~~S~~AvewL~~--ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskv 168 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRG--EFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKV 168 (477)
T ss_pred HHHHHHhcCHHHHHHHhh--hcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhccee
Confidence 666666666555555432 1333222211 111 1111111 234666666666542 3789999999
Q ss_pred EEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc-----ccceeeEE----------
Q 005273 356 DDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV-----PKDFAVGL---------- 420 (704)
Q Consensus 356 ~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~-----~~~~avG~---------- 420 (704)
++|..++|+|.||+..+..+. ...+.++.||+|+|+++..-.+||+.+++.+. +.+++.|+
T Consensus 169 v~il~n~gkVsgVeymd~sge----k~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~l~klga 244 (477)
T KOG2404|consen 169 VDILRNNGKVSGVEYMDASGE----KSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKMLMKLGA 244 (477)
T ss_pred eeeecCCCeEEEEEEEcCCCC----ccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHHHHHhCc
Confidence 999999999999999876543 45688999999999998644578887766544 33555544
Q ss_pred -------EEecchhhhccc----ccccchhhhcccCCCCccccccceecccCCCCCCCCccccchhhhhh
Q 005273 421 -------RMEHPQELINSI----QYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYS 479 (704)
Q Consensus 421 -------~~~~p~~~~~~~----~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~ 479 (704)
.+-||+.++++- .+..+++|++||.|++++ +..+.||.+||..||.+.-.+..
T Consensus 245 ~liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl------~s~GrRF~nELg~RDyvTgei~k 308 (477)
T KOG2404|consen 245 SLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILL------NSTGRRFGNELGTRDYVTGEIQK 308 (477)
T ss_pred cccccceeEecccCccCCCCchhHHHHHHHHHhccCceEEE------eccchhhhcccccchhhhHhHHh
Confidence 345888887765 245689999999998655 35688999999999999988876
No 41
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.80 E-value=7e-18 Score=195.35 Aligned_cols=256 Identities=15% Similarity=0.107 Sum_probs=147.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccccc----cccccCCcccccCcchh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEMESN----FCFGEGGAGTWSDGKLV 292 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n----~~~g~gG~~~~sdg~l~ 292 (704)
..||+|||+|.|||.||+.+++. |.+|+|+||....+......+.......+..... +.........+.+.+++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 47999999999999999999998 9999999998764322110000000000000000 00000011123455555
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCccccCC-----CChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGT-----DRLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~-----~~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~ 366 (704)
..+... ..+.++||..+|+++.....+..+... .....+.+.|.+.+++.+ |++++++.|++|+.++++|+
T Consensus 91 ~~~~~~---s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~ 167 (608)
T PRK06854 91 YDIARH---VDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIA 167 (608)
T ss_pred HHHHHh---HHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEE
Confidence 554443 345667788999988765444322110 123357778888888775 99999999999988888999
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCCChH----------------------HHHHHHHhCCCcccccceeeEEEEec
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR----------------------DIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~----------------------~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
||.+.+..+ ++...+.|+.||+|||+++. +.+.|+...|..+....+ +.|
T Consensus 168 Gv~~~~~~~---g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~-----qf~ 239 (608)
T PRK06854 168 GAVGFSVRE---NKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFEN-----RFI 239 (608)
T ss_pred EEEEEEccC---CcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCCcc-----eEe
Confidence 987543211 12347899999999998763 234455555555443322 123
Q ss_pred chhhhcccccccchhhhcccCCCCccccccceecccCCCCC---------------CCCccccchhhhhhhhccCCceEE
Q 005273 425 PQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD---------------ALSGVVTTNRSCYSFCMCPGGQIV 489 (704)
Q Consensus 425 p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~---------------e~a~Rd~~~r~v~~fc~~~gG~vv 489 (704)
|.......... ....++.+. .+++..++||++ +++|||++.|+++......+|.|+
T Consensus 240 p~~~~~~~~~~---~~~~~~~ga------~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e~~~g~g~v~ 310 (608)
T PRK06854 240 PLRFKDGYGPV---GAWFLLFKA------KAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRGPIY 310 (608)
T ss_pred ccccCCCCCCc---ccceeecCc------eeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHHHhcCCCCeE
Confidence 33221111000 001123332 344556666664 357899999999877443344455
Q ss_pred EccCC
Q 005273 490 LTSTN 494 (704)
Q Consensus 490 ~~~~~ 494 (704)
++.++
T Consensus 311 lD~~~ 315 (608)
T PRK06854 311 MDTEE 315 (608)
T ss_pred EEccc
Confidence 55444
No 42
>PRK08275 putative oxidoreductase; Provisional
Probab=99.78 E-value=9.9e-18 Score=192.70 Aligned_cols=256 Identities=17% Similarity=0.156 Sum_probs=148.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccc-ccc-cc---ccCCcccccCcch
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEME-SNF-CF---GEGGAGTWSDGKL 291 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~-~n~-~~---g~gG~~~~sdg~l 291 (704)
.+||+|||+|.|||.||+.+++. |.+|+|+||....++.....+.......+..+ .+. .+ .........+.++
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 47999999999999999999987 68999999998643221111110111111110 000 00 0000112245555
Q ss_pred hhhhccCchhHHHHHHHHHHcCCCceeecCCcc-----c-cC-----CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE
Q 005273 292 VTRIGRNSNSVLAVMNTLVHFGAPANILVDGKS-----H-LG-----TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI 360 (704)
Q Consensus 292 ~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~-----~-~g-----~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~ 360 (704)
+..+.... .+.++|+.++|+++.....+.. + .+ ......+.+.|.+.+++.|+++++++.|++|+.
T Consensus 89 v~~~~~~s---~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 89 VYAYAEHS---FETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHhh---HHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 55554433 4456677889998876443321 1 11 112345788999999999999999999999988
Q ss_pred e-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH--------------------HHHHHHhCCCcccccceeeE
Q 005273 361 E-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD--------------------IYEMLVSHNINLVPKDFAVG 419 (704)
Q Consensus 361 ~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~--------------------~~~~l~~~gi~l~~~~~avG 419 (704)
+ +++|.||.+.+... ++...+.|+.||+|||++++. .+.|+...|..+.+..+
T Consensus 166 ~~~g~v~Gv~~~~~~~---g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--- 239 (554)
T PRK08275 166 DADGRVAGALGFDCRT---GEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC--- 239 (554)
T ss_pred cCCCeEEEEEEEecCC---CcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE---
Confidence 7 78899998654211 123568999999999997642 22333333433332211
Q ss_pred EEEecchhhhcccccccchhhhcc-cCCCCccccccceecccCCCCCCCCccccchhhhhhhhccCCceEEEccCC
Q 005273 420 LRMEHPQELINSIQYSELATEVQK-GRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSFCMCPGGQIVLTSTN 494 (704)
Q Consensus 420 ~~~~~p~~~~~~~~~~~l~~e~~~-g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~fc~~~gG~vv~~~~~ 494 (704)
.+.||... . .. +.... .+. +.| ..+++..++||++...+++.+.|+++......+|.|+++.++
T Consensus 240 -~q~~p~~~-~-~~-~~~~~-~~~~~~g------~~lvn~~G~RF~~~~~~~~~~~~ai~~e~~~g~g~v~ld~~~ 304 (554)
T PRK08275 240 -FQINPLIK-D-YN-GPACA-YVTGPLG------GYTANAKGERFIECDYWSGQMMWEFYQELQSGNGPVFLKLDH 304 (554)
T ss_pred -EEEeceee-c-CC-CCccc-eeccccC------cEEeCCCCCccccccCCchHHHHHHHHHHHcCCCcEEEECCC
Confidence 12233210 0 00 00000 000 111 256677889999888888888999988755444555555443
No 43
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.76 E-value=6.8e-18 Score=191.52 Aligned_cols=256 Identities=22% Similarity=0.264 Sum_probs=167.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccc-----c---ccccccCCcccccCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEME-----S---NFCFGEGGAGTWSDG 289 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~-----~---n~~~g~gG~~~~sdg 289 (704)
..+||+|||+|.|||.||+.+++.|.+|+|+||....++.+....+.....+-+.. + .+.....+.....|.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dq 84 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQ 84 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCH
Confidence 35799999999999999999999999999999998876433222111111110010 0 000011111222344
Q ss_pred chhhhhccCchhHHHHHHHHHHcCCCceeecCCc--------------cccCCCChHHHHHHHHHHHHH-CCCEEEeCeE
Q 005273 290 KLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGK--------------SHLGTDRLIPLLRNFRQHLQR-LGVTIKFGTR 354 (704)
Q Consensus 290 ~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~--------------~~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~ 354 (704)
+++..+.+. ....+.+|.++|.++....+|. ++.+......++..|.+++.+ .+++++.+..
T Consensus 85 d~i~~~~~~---ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~ 161 (562)
T COG1053 85 DAVEAFADE---APEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYF 161 (562)
T ss_pred HHHHHHHHh---hHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhh
Confidence 444443332 3446778889999998777651 222223345688889999988 5678999999
Q ss_pred EEEEEEeCCE-EEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh-------------HHHHHHHHhCCCcccccceeeEE
Q 005273 355 VDDLLIENAR-IVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA-------------RDIYEMLVSHNINLVPKDFAVGL 420 (704)
Q Consensus 355 V~~i~~~~g~-v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s-------------~~~~~~l~~~gi~l~~~~~avG~ 420 (704)
+.+|+.+++. |.|+...+..+ ++...+.+++||+|||+.+ .+.+.|+.+.|.++..+.+
T Consensus 162 ~~~l~~~~~~~v~Gvv~~~~~~---g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~---- 234 (562)
T COG1053 162 VLDLLVDDGGGVAGVVARDLRT---GELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEF---- 234 (562)
T ss_pred hhhheecCCCcEEEEEEEEecC---CcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCc----
Confidence 9999988665 88888766543 2456788999999999876 2556677777777655433
Q ss_pred EEecchhhhcccccccchhhhcccCCCCccc--cccceeccc-CCCCCCCCccccchhhhhhhhccCCc
Q 005273 421 RMEHPQELINSIQYSELATEVQKGRGKVPVA--DYKVAKYVS-GEDGDALSGVVTTNRSCYSFCMCPGG 486 (704)
Q Consensus 421 ~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~--d~~~~~~~~-~~~~~e~a~Rd~~~r~v~~fc~~~gG 486 (704)
.+.||+.+.. .+.+++|.+||.|+++.+ ..+++.... .....+++|||.++|+++..++..+|
T Consensus 235 ~Q~hpt~~~~---~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g 300 (562)
T COG1053 235 VQFHPTGLVG---SGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRG 300 (562)
T ss_pred cccccceecC---CceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCC
Confidence 4557765544 567889999999887665 223322211 11122599999999999998765444
No 44
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.75 E-value=1.3e-16 Score=196.65 Aligned_cols=252 Identities=24% Similarity=0.289 Sum_probs=147.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch-hHHHH------HHhhccccccccc----cCCccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI-GALVV------RRMLEMESNFCFG----EGGAGT 285 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~-~~~~~------~~~l~~~~n~~~g----~gG~~~ 285 (704)
+...||||||+|.|||.||+.+++.|.+|+|+||....|+.+... ++++. ...-..++...+. ..+.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 345899999999999999999999999999999998877654211 11110 0000000000000 001112
Q ss_pred ccCcchhhhhccCchhHHHHHHHHHHcCCCceeec--CCcc----cc------CC--CChHHHHHHHHHHHHH---CCCE
Q 005273 286 WSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILV--DGKS----HL------GT--DRLIPLLRNFRQHLQR---LGVT 348 (704)
Q Consensus 286 ~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~--~g~~----~~------g~--~~~~~l~~~L~~~l~~---~Gv~ 348 (704)
..|++++..+..++ .+.++|+.++|+++.... .+.. +. +. .....+++.|.+.+++ .|++
T Consensus 487 ~~d~~lv~~~~~~s---~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~ 563 (1167)
T PTZ00306 487 HCDPGLVKTLSVKS---ADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT 563 (1167)
T ss_pred CCCHHHHHHHHHhh---HHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcE
Confidence 34556666555544 345567778898876421 1111 10 00 0124467778777765 4999
Q ss_pred EEeCeEEEEEEEeC-----C----EEEEEEEcCC---CCCCCCceeEEecCeEEEcCCCChHHHH--HHHHhCCCccc--
Q 005273 349 IKFGTRVDDLLIEN-----A----RIVGVKVSDS---KDNSQSDIQKLGFDAVILAVGHSARDIY--EMLVSHNINLV-- 412 (704)
Q Consensus 349 i~~~t~V~~i~~~~-----g----~v~GV~~~~~---~~~~~~~~~~i~Ad~VVlAtG~~s~~~~--~~l~~~gi~l~-- 412 (704)
|++++++++|+.++ | +|+||.+.+. ++ +...+.|+.||||||+++.+.. +|++++...+.
T Consensus 564 i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g----~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~~ 639 (1167)
T PTZ00306 564 IMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASG----QVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGF 639 (1167)
T ss_pred EEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCC----cEEEEEeceEEEecCCcccCccHHHHHHHhCccccCC
Confidence 99999999999864 2 8999998754 22 2467999999999999987532 46665543211
Q ss_pred ---ccceeeEEE------Eecchhhhcccccccc---------------hhhhcccCCCCccccccceecccCCCCCCCC
Q 005273 413 ---PKDFAVGLR------MEHPQELINSIQYSEL---------------ATEVQKGRGKVPVADYKVAKYVSGEDGDALS 468 (704)
Q Consensus 413 ---~~~~avG~~------~~~p~~~~~~~~~~~l---------------~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a 468 (704)
..+...|.- +......++.+++.+. ..+.+++ ....+++..|+||++|+.
T Consensus 640 ~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~g~ilVN~~GkRF~nE~~ 713 (1167)
T PTZ00306 640 PTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRG------SGGVLLNKNGERFVNELD 713 (1167)
T ss_pred CCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcC------CceEEECCCCCCcccccC
Confidence 112222211 1111111222222110 0011111 123567888999999999
Q ss_pred ccccchhhhhhhh
Q 005273 469 GVVTTNRSCYSFC 481 (704)
Q Consensus 469 ~Rd~~~r~v~~fc 481 (704)
+|+.+.++++.+.
T Consensus 714 ~~~~~~~ai~~~~ 726 (1167)
T PTZ00306 714 LRSVVSQAIIAQG 726 (1167)
T ss_pred cHHHHHHHHHhhc
Confidence 9999999887653
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.75 E-value=6e-17 Score=195.55 Aligned_cols=174 Identities=22% Similarity=0.285 Sum_probs=109.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch-hHHHH-HHhhccccc----cccccCCcccccCcch
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI-GALVV-RRMLEMESN----FCFGEGGAGTWSDGKL 291 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~-~~~~~-~~~l~~~~n----~~~g~gG~~~~sdg~l 291 (704)
..+||+|||+|.|||.||+.+++.|.+|+|+||..... .+... +.... ........+ +.....+.....|.++
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~-sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRH-SGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccC-CCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 35799999999999999999999999999999987521 11111 10011 111110000 0001111122345555
Q ss_pred hhhhccCchhHHHHHHHHHHcCCCceeecCCcc-----cc------CCCChHHHHHHHHHHHHHC----CCEEEeCeEEE
Q 005273 292 VTRIGRNSNSVLAVMNTLVHFGAPANILVDGKS-----HL------GTDRLIPLLRNFRQHLQRL----GVTIKFGTRVD 356 (704)
Q Consensus 292 ~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~-----~~------g~~~~~~l~~~L~~~l~~~----Gv~i~~~t~V~ 356 (704)
+..+..+. ...++|+.++|+++....++.. +. +......+.+.|.+.+.+. ++.+..++.+.
T Consensus 91 v~~~~~~a---~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~ 167 (897)
T PRK13800 91 VYQTATRG---FAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPV 167 (897)
T ss_pred HHHHHHhH---HHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeE
Confidence 55554433 3466788899999987655431 10 0112345667777777654 68888888888
Q ss_pred EEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 357 DLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 357 ~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+|+.++++|.||.+.+..+ ++...+.|+.||+|||++++
T Consensus 168 ~Li~~~g~v~Gv~~~~~~~---g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 168 RVLTEGGRAVGAAALNTRT---GEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred EEEeeCCEEEEEEEEecCC---CcEEEEECCEEEECCCcccc
Confidence 9988889999998754321 13467899999999999753
No 46
>PRK07121 hypothetical protein; Validated
Probab=99.75 E-value=3.1e-17 Score=186.36 Aligned_cols=247 Identities=19% Similarity=0.205 Sum_probs=140.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHH-H------HHhhcccccc-c-cc--cCCcccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALV-V------RRMLEMESNF-C-FG--EGGAGTW 286 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~-~------~~~l~~~~n~-~-~g--~gG~~~~ 286 (704)
...||||||+|.|||+||+.+++.|.+|+|+||....++.+...++.+ . ........+. . +. ....+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~~ 98 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGPG 98 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 357999999999999999999999999999999988776543222110 0 0000000000 0 00 0000112
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHcCCCceeecC----------------C----cc-----------cc--CC-C--C
Q 005273 287 SDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVD----------------G----KS-----------HL--GT-D--R 330 (704)
Q Consensus 287 sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~----------------g----~~-----------~~--g~-~--~ 330 (704)
.+.+++..+..+. .+.++|+.++|+++..... + .+ +. .. . .
T Consensus 99 ~d~~l~~~~~~~s---~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (492)
T PRK07121 99 VDEEKLRRYCEGS---VEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGG 175 (492)
T ss_pred CCHHHHHHHHHcc---HHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCc
Confidence 3444554444443 3345677778877653210 0 00 00 00 1 2
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCCCCCCCCceeEEec-CeEEEcCCCChHHHHHHHHhCC
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDSKDNSQSDIQKLGF-DAVILAVGHSARDIYEMLVSHN 408 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~~~~~~~~~~~i~A-d~VVlAtG~~s~~~~~~l~~~g 408 (704)
...+++.|.+.+++.|++|+++++|++|+.++ ++|+||++.+.. +...+.| +.||+|||+++.+ .+|++.+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~-----~~~~i~a~k~VVlAtGg~~~N-~em~~~~~ 249 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYG-----ETVAIRARKGVVLAAGGFAMN-REMVARYA 249 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCC-----cEEEEEeCCEEEECCCCcCcC-HHHHHHhC
Confidence 45688899999999999999999999998864 689999886432 1357889 9999999998864 24555443
Q ss_pred Cccc-----ccceeeEE------EEecchhhhcccccccchhhhcccCCCCccccccceecccCCCCCCCCccccchhhh
Q 005273 409 INLV-----PKDFAVGL------RMEHPQELINSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSC 477 (704)
Q Consensus 409 i~l~-----~~~~avG~------~~~~p~~~~~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v 477 (704)
.... ..+...|. ........++..+...... .+. ......+++..++||++|..+++.+.+.+
T Consensus 250 p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~-----~~~-~~~~~i~Vn~~G~RF~nE~~~~~~~~~~~ 323 (492)
T PRK07121 250 PAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIY-----PPS-ALLRGILVNARGQRFVNEDTYGARIGQFI 323 (492)
T ss_pred CcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCccc-----CCC-CcCCeEEECCCCCEeecCCCcHHHHHHHH
Confidence 2211 01111121 1111111111111110000 000 01123577788999999988888777665
Q ss_pred hh
Q 005273 478 YS 479 (704)
Q Consensus 478 ~~ 479 (704)
..
T Consensus 324 ~~ 325 (492)
T PRK07121 324 LE 325 (492)
T ss_pred Hh
Confidence 43
No 47
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.75 E-value=1.6e-16 Score=182.72 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=107.2
Q ss_pred cEEEEcCCHHHHHHHHHHH----HcCCcEEEEEeCccccccccchhHH-HHHHhhcc----c---cccccccCCcccccC
Q 005273 221 KVAVVGGGPSGLFASLVLA----ELGADVTLIERGQAVEQRGRDIGAL-VVRRMLEM----E---SNFCFGEGGAGTWSD 288 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~----~~g~~v~l~e~~~~~~~~~~~~~~~-~~~~~l~~----~---~n~~~g~gG~~~~sd 288 (704)
||+|||+|.|||.||+.++ +.|.+|+|+||....+..+. ..+. .....+.. + ..+...........|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~-A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAV-AQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCcc-ccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 7999999999999999998 67999999999876432221 1111 11111110 0 000000000112355
Q ss_pred cchhhhhccCchhHHHHHHHHHHcCCCceeec-CCcccc-C----CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC
Q 005273 289 GKLVTRIGRNSNSVLAVMNTLVHFGAPANILV-DGKSHL-G----TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN 362 (704)
Q Consensus 289 g~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~-~g~~~~-g----~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~ 362 (704)
.+++..+..+. .+.++||.++|+++.... .+.... + ......+.+.+...+.+.+++++.++.+++|+.++
T Consensus 80 ~~lV~~lv~~s---~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~ 156 (614)
T TIGR02061 80 EDLIFDMARHV---DDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDK 156 (614)
T ss_pred HHHHHHHHHHH---HHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecC
Confidence 66666555543 456677788999997642 332111 0 00123455566667777788999999999999865
Q ss_pred ---CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 363 ---ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 363 ---g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
++|+||.+.+..+ ++...+.|++||+|||+++.
T Consensus 157 ~~~GrV~Gv~~~~~~~---g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 157 NTPNRIAGAVGFNVRA---NEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred CCCCeEEEEEEEEeCC---CcEEEEECCEEEECCCcccc
Confidence 7999998754322 12457899999999999764
No 48
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.73 E-value=6.4e-17 Score=181.30 Aligned_cols=250 Identities=21% Similarity=0.223 Sum_probs=139.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCccccccccchhHHHHH------Hhhcccccc--cc--ccCCcccccCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAVEQRGRDIGALVVR------RMLEMESNF--CF--GEGGAGTWSDG 289 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~~~~~~~~~~~~~~~------~~l~~~~n~--~~--g~gG~~~~sdg 289 (704)
||||||+|.+|++||+.++++| .+|+|+||....++.+...++.+.. ......... .+ -......+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999998876654322211100 000000000 00 00011223455
Q ss_pred chhhhhccCchhHHHHHHHHHHcCCCceee----cCCccc-------cCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEE
Q 005273 290 KLVTRIGRNSNSVLAVMNTLVHFGAPANIL----VDGKSH-------LGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDL 358 (704)
Q Consensus 290 ~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~----~~g~~~-------~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i 358 (704)
+++..+...... .++|+. .++.+... ..+... .+......+++.|.+.+++.|++++++++|++|
T Consensus 81 ~l~~~~~~~~~~---~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l 156 (439)
T TIGR01813 81 ELVRILAEESAD---AVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDL 156 (439)
T ss_pred HHHHHHHhccHH---HHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEe
Confidence 666665555443 345555 44433221 111111 111234568899999999999999999999999
Q ss_pred EEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc-----ccceeeE------EEEecch
Q 005273 359 LIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV-----PKDFAVG------LRMEHPQ 426 (704)
Q Consensus 359 ~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~-----~~~~avG------~~~~~p~ 426 (704)
+.+ +++++||++.+.++ +...+.++.||+|+|+++.+ .+|++.+..... ..+...| .......
T Consensus 157 ~~~~~g~v~Gv~~~~~~g----~~~~~~a~~VVlAtGg~~~n-~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l 231 (439)
T TIGR01813 157 IQDDQGTVVGVVVKGKGK----GIYIKAAKAVVLATGGFGSN-KEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGAAL 231 (439)
T ss_pred EECCCCcEEEEEEEeCCC----eEEEEecceEEEecCCCCCC-HHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCCCc
Confidence 885 56899998875432 12457899999999998864 245544422110 0111111 1111111
Q ss_pred hhhcccccccchhhh----cccCCCCccccccceecccCCCCCCCCccccchhhhhhh
Q 005273 427 ELINSIQYSELATEV----QKGRGKVPVADYKVAKYVSGEDGDALSGVVTTNRSCYSF 480 (704)
Q Consensus 427 ~~~~~~~~~~l~~e~----~~g~g~~~~~d~~~~~~~~~~~~~e~a~Rd~~~r~v~~f 480 (704)
..++..++.+..... ..+. ........+++..++||++|+.+++.+.+.++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~vn~~G~RF~~E~~~~~~~~~~~~~~ 288 (439)
T TIGR01813 232 VDMDYIQAHPTASPDEGGFLISE-AVRGYGAILVNKTGERFMNELATRDTVSDAILAQ 288 (439)
T ss_pred cCCchhheecccccCCcceeehh-hcccCcEEEECCCCCCccccCCcHHHHHHHHHhC
Confidence 111222221111000 0000 0000113566788999999999999888877654
No 49
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.72 E-value=6e-16 Score=177.76 Aligned_cols=181 Identities=23% Similarity=0.236 Sum_probs=112.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHH-------HHHHhhccccccc-----c-ccCCccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGAL-------VVRRMLEMESNFC-----F-GEGGAGT 285 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~-------~~~~~l~~~~n~~-----~-g~gG~~~ 285 (704)
.+||+|||+|.+|+.||+.+++.|.+|+|||+....|+.+...++. +....-..++... . -..+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~ 85 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQGP 85 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhccccc
Confidence 5799999999999999999999999999999998776643222111 0000000000000 0 0001111
Q ss_pred ccCcchhhhhccCchhHHHHHHHHHHcCCCceeec----------CCccc-----c-----------------------C
Q 005273 286 WSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILV----------DGKSH-----L-----------------------G 327 (704)
Q Consensus 286 ~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~----------~g~~~-----~-----------------------g 327 (704)
..+.+++..+.+.. .+.++|+.+.|+++.... .+..+ . +
T Consensus 86 ~~~~~~~~~~~~~s---~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK12844 86 ASSPERREAYLRAG---PAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPG 162 (557)
T ss_pred CCCHHHHHHHHhhh---HHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccc
Confidence 13334444444433 345567778888775321 11100 0 0
Q ss_pred -----------------------------------------CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEE
Q 005273 328 -----------------------------------------TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 328 -----------------------------------------~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
......++..|.+.+++.|++++++++|++|+.++++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~ 242 (557)
T PRK12844 163 TVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVV 242 (557)
T ss_pred ccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEE
Confidence 001234667788889999999999999999999899999
Q ss_pred EEEEcCCCCCCCCceeEEec-CeEEEcCCCChHHHHHHHHhCC
Q 005273 367 GVKVSDSKDNSQSDIQKLGF-DAVILAVGHSARDIYEMLVSHN 408 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~A-d~VVlAtG~~s~~~~~~l~~~g 408 (704)
||.+.... +...+.| +.||||||+++.+ .+|++.+.
T Consensus 243 Gv~~~~~g-----~~~~i~A~~aVIlAtGG~~~N-~em~~~~~ 279 (557)
T PRK12844 243 GVVVVRDG-----REVLIRARRGVLLASGGFGHN-AEMRKRYQ 279 (557)
T ss_pred EEEEEECC-----eEEEEEecceEEEecCCccCC-HHHHHHhc
Confidence 99886421 2356888 4899999999875 34555443
No 50
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.72 E-value=1.3e-16 Score=182.98 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEec-CeEEEcCCCChHHHHHHHHhCCCc-
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGF-DAVILAVGHSARDIYEMLVSHNIN- 410 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~A-d~VVlAtG~~s~~~~~~l~~~gi~- 410 (704)
.++..|.+.+++.||+|+++++|++|+.++++|+||.+.+..+ ...+.| +.||||||+++.+ .+|++++...
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~-----~~~i~a~kaVILAtGGf~~n-~em~~~y~p~~ 291 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGR-----EVTVTARRGVVLAAGGFDHD-MEMRWKFQSES 291 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCc-----EEEEEcCCEEEEecCCcccc-HHHHHHhCCCc
Confidence 3566788888899999999999999998788999998764321 245666 6899999999875 3555554321
Q ss_pred -----ccccceeeEE------EEecchhhhcccccccchhhhcccCCCCc-----cccccceecccCCCCCCCCccccch
Q 005273 411 -----LVPKDFAVGL------RMEHPQELINSIQYSELATEVQKGRGKVP-----VADYKVAKYVSGEDGDALSGVVTTN 474 (704)
Q Consensus 411 -----l~~~~~avG~------~~~~p~~~~~~~~~~~l~~e~~~g~g~~~-----~~d~~~~~~~~~~~~~e~a~Rd~~~ 474 (704)
....+...|. .+......++..++.+.......+..... .....+++..++||++|..++....
T Consensus 292 ~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~~~~ 371 (564)
T PRK12845 292 LGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQAWWFPAVAPLPGGAPAVMLAERSLPGSLIVDQTGRRFVNEATDYMSFG 371 (564)
T ss_pred cccccccCCCCCCCHHHHHHHHcCCCccCCccceEecccccCCCCCcccchhhhccCceEEECCCCCEecCCCCchhHHH
Confidence 1111222221 11111111222232221110000000000 0113567888999999988887776
Q ss_pred hhhhh
Q 005273 475 RSCYS 479 (704)
Q Consensus 475 r~v~~ 479 (704)
+.++.
T Consensus 372 ~~~~~ 376 (564)
T PRK12845 372 QRVLE 376 (564)
T ss_pred HHHHh
Confidence 66654
No 51
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.72 E-value=2.5e-15 Score=169.70 Aligned_cols=174 Identities=24% Similarity=0.325 Sum_probs=109.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc--ccccccchhHHHH-HH----hh-cccccc-ccc--cCCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA--VEQRGRDIGALVV-RR----ML-EMESNF-CFG--EGGAGTWS 287 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~--~~~~~~~~~~~~~-~~----~l-~~~~n~-~~g--~gG~~~~s 287 (704)
..||||||+|++|++||+.+++.|.+|+|+||.+. .|+.+....++.. .. .. ...+.. .+. ....+...
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 47999999999999999999999999999999874 4443322111100 00 00 000000 000 00000112
Q ss_pred CcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCC------CChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe
Q 005273 288 DGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGT------DRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE 361 (704)
Q Consensus 288 dg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~------~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~ 361 (704)
+..++..+.... .+.++|+.+.|+++.....+..+... .....++..|.+.+++.|++++++++|++|+.+
T Consensus 84 ~~~~~~~~~~~s---~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~ 160 (466)
T PRK08274 84 DEALARLLIRES---SDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD 160 (466)
T ss_pred CHHHHHHHHHcC---HHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec
Confidence 333333333322 34566788889887654433221111 113468888999999999999999999999988
Q ss_pred CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 362 NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 362 ~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+++|+||++.+..+ +...+.|+.||+|+|+++.+
T Consensus 161 ~g~v~gv~~~~~~g----~~~~i~a~~VIlAtGg~~~n 194 (466)
T PRK08274 161 DGRFVGARAGSAAG----GAERIRAKAVVLAAGGFESN 194 (466)
T ss_pred CCeEEEEEEEccCC----ceEEEECCEEEECCCCCCCC
Confidence 89999998853221 13578999999999998654
No 52
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.71 E-value=1.7e-16 Score=180.77 Aligned_cols=251 Identities=17% Similarity=0.182 Sum_probs=137.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhH--HHH--HHhhcc---ccccc----cccCCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGA--LVV--RRMLEM---ESNFC----FGEGGAGTWS 287 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~--~~~--~~~l~~---~~n~~----~g~gG~~~~s 287 (704)
..||||||+| +||+||+.+++.|.+|+|+||....|+.+...++ ++. ...... ..... +-....+...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 85 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGDRT 85 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcccC
Confidence 5799999999 9999999999999999999999877664432211 110 000000 00000 0000000112
Q ss_pred CcchhhhhccCchhHHHHHHHHHH-cCCCceeec----CC----------c-----ccc--------------------C
Q 005273 288 DGKLVTRIGRNSNSVLAVMNTLVH-FGAPANILV----DG----------K-----SHL--------------------G 327 (704)
Q Consensus 288 dg~l~~~~~~~~~~~~~~l~~l~~-~G~~~~~~~----~g----------~-----~~~--------------------g 327 (704)
+.+++..+..+. ...++|+.+ .|+.+.... .+ + ++. +
T Consensus 86 ~~~l~~~~~~~s---~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
T PRK12837 86 PRDLQETYVRGG---APLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLG 162 (513)
T ss_pred CHHHHHHHHHHH---HHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhc
Confidence 334443333332 334556654 476654321 00 0 000 0
Q ss_pred C------CChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecC-eEEEcCCCChHH
Q 005273 328 T------DRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFD-AVILAVGHSARD 399 (704)
Q Consensus 328 ~------~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad-~VVlAtG~~s~~ 399 (704)
. .....++..|.+.+.+. |++|+++++|++|+.++++|+||.+.... ....+.|+ .||||||++..+
T Consensus 163 ~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g-----~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 163 APPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGG-----ERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred cCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECC-----cEEEEEeCceEEEeCCCccCC
Confidence 0 01224666777777664 99999999999999888999999875432 23578896 899999999765
Q ss_pred HHHHHHhCCCcc-----cccceeeEEE------EecchhhhcccccccchhhhcccCCC--CccccccceecccCCCCCC
Q 005273 400 IYEMLVSHNINL-----VPKDFAVGLR------MEHPQELINSIQYSELATEVQKGRGK--VPVADYKVAKYVSGEDGDA 466 (704)
Q Consensus 400 ~~~~l~~~gi~l-----~~~~~avG~~------~~~p~~~~~~~~~~~l~~e~~~g~g~--~~~~d~~~~~~~~~~~~~e 466 (704)
. +|++.+..+. ...+...|.- +......++..++.+..... .+... .......+++..+.||++|
T Consensus 238 ~-~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~-~~~~~~~~~~~~~i~Vn~~GkRF~nE 315 (513)
T PRK12837 238 D-DMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHP-DGRSAFALWFTGGIFVDQHGERFVNE 315 (513)
T ss_pred H-HHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecC-CCcceeccccCceEEECCCCCCcccC
Confidence 2 5666554221 1112222221 11111112222222211000 00000 0001235677889999999
Q ss_pred CCccccchhhhhhh
Q 005273 467 LSGVVTTNRSCYSF 480 (704)
Q Consensus 467 ~a~Rd~~~r~v~~f 480 (704)
+.+||.+++.++..
T Consensus 316 ~~~~~~~~~a~~~~ 329 (513)
T PRK12837 316 SAPYDRLGRAVIAE 329 (513)
T ss_pred CCcHhHHHHHHHhh
Confidence 99999999988764
No 53
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=99.69 E-value=2.4e-16 Score=172.28 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred CceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeEEEEEE--eeecC-ceeccCCCCCccccCcCCeeEccccch
Q 005273 583 LGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGLLHGVE--TRTSC-PLQIPRNNETCESTSLKGLYPVGEGAG 659 (704)
Q Consensus 583 ~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~~~Gve--~~~~~-p~~i~~~~~tles~~i~GLy~~GE~aG 659 (704)
..++..+++..||..++.++.+ .+||+.+++.+.+|+. +++.+ |..+. .|||+|.++||||||+++|
T Consensus 271 ~~~~~~G~~t~l~~~~Q~~~~r-------~ipgle~a~~~r~g~~~~~~~i~~p~~L~---~~l~~k~~~~lf~AGQi~G 340 (433)
T TIGR00137 271 TLWNMVGFQTNLRWGEQKRVFR-------LIPGLENAEFVRMGVMHRNTFINSPQLLT---ASLHFKDRQTLFFAGQLTG 340 (433)
T ss_pred CEEecccccCCCCHHHHHHHHh-------cCcCccceEEeecceEEeeeeeCCHHHhh---HHhccCCCCCEEECccccc
Confidence 4577789999999998877764 4599999999988777 55666 57775 6899999999999999999
Q ss_pred hhHH---HHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhh
Q 005273 660 YAGG---IVSAAADGMYAGFAVAKDFGLFPADIESILGKA 696 (704)
Q Consensus 660 ~~GG---i~sA~~~G~~Aa~~i~~~~~~~~~~~~~~~g~~ 696 (704)
.+|+ .+|++++|++||+.+..+.++.+. .++|||.-
T Consensus 341 ~~GY~Eaaa~Gl~agina~~~~~~~~~~~~~-~~~~iG~l 379 (433)
T TIGR00137 341 VEGYVASTAGGWLAGINAARLALGEPLLTLP-AETMMGAL 379 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CcchHHHH
Confidence 9988 679999999999999988888888 79999963
No 54
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.68 E-value=7e-16 Score=171.71 Aligned_cols=168 Identities=29% Similarity=0.384 Sum_probs=102.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccc--ccc------------CCcccc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFC--FGE------------GGAGTW 286 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~--~g~------------gG~~~~ 286 (704)
||||||+|.|||.||+.|+++|.+|+|+||....++......+.+ .-..+..+ .+. ......
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGF----DAAGTPPQREAGIEDSPEEFFQDIMAAGGGL 76 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEE----EESSSHSSHHTTTTCHHHHHHHHHHHHTTT-
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCce----eeecccccccccccccccccceeeecccccc
Confidence 799999999999999999999999999999998765322111000 00000000 000 000011
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHcCCCceeecCC---------c--c---cc-CCC-------ChHHHHHHHHHHHHH
Q 005273 287 SDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDG---------K--S---HL-GTD-------RLIPLLRNFRQHLQR 344 (704)
Q Consensus 287 sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g---------~--~---~~-g~~-------~~~~l~~~L~~~l~~ 344 (704)
.+..++..+.+ ...+.++||.+.|+++.....+ . . +. ..+ ....++..|.+.+++
T Consensus 77 ~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 77 NDPDLVRAFVE---NSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp S-HHHHHHHHH---HHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhh---cccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 23333333322 2445677888888887761111 0 1 11 111 346688999999999
Q ss_pred CCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 345 LGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 345 ~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+|++|++++++++|+.++++|+||.+.+..+ +....++|+.||+|||+++.
T Consensus 154 ~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~---g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITEDGRVTGVVAENPAD---GEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp TTEEEEESEEEEEEEEETTEEEEEEEEETTT---CEEEEEEESEEEE----BGG
T ss_pred cCeeeeccceeeeEEEeCCceeEEEEEECCC---CeEEEEeeeEEEeccCcccc
Confidence 9999999999999999999999999984322 23467999999999999986
No 55
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.68 E-value=1.1e-15 Score=176.02 Aligned_cols=231 Identities=17% Similarity=0.133 Sum_probs=144.2
Q ss_pred HHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhh--ccccccc----cccCCcccccCcchhhhhccCchhHHHH
Q 005273 232 LFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRML--EMESNFC----FGEGGAGTWSDGKLVTRIGRNSNSVLAV 305 (704)
Q Consensus 232 l~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l--~~~~n~~----~g~gG~~~~sdg~l~~~~~~~~~~~~~~ 305 (704)
|.||+.+++.|.+|+|+||....++.+....+.+....- .+..+.. ..........|.+++..+..+ ..+.
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~---a~~~ 77 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSV---GPEA 77 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHH
Confidence 578999999999999999998765433222211111110 0111100 000011123455555555443 3456
Q ss_pred HHHHHHcCCCceeecCCccc----c------------------CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-C
Q 005273 306 MNTLVHFGAPANILVDGKSH----L------------------GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-N 362 (704)
Q Consensus 306 l~~l~~~G~~~~~~~~g~~~----~------------------g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~ 362 (704)
++|+.++|+++....+++.+ . .......++..|.+.+++.||+++.++.+++|+.+ +
T Consensus 78 i~~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~ 157 (570)
T PRK05675 78 VFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD 157 (570)
T ss_pred HHHHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC
Confidence 67788899998764332211 0 11124568899999998899999999999999985 6
Q ss_pred CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEEEEecchhhh
Q 005273 363 ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGLRMEHPQELI 429 (704)
Q Consensus 363 g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~~~~~p~~~~ 429 (704)
++|+||...+..+ +....+.|++||||||+++. +.+.|+...|..+....+ .+.||+.+.
T Consensus 158 g~v~Gv~~~~~~~---g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~----~q~~Pt~~~ 230 (570)
T PRK05675 158 GAVVGVIAICIET---GETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM----WQFHPTGIA 230 (570)
T ss_pred CeEEEEEEEEcCC---CcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccc----eeeecceeC
Confidence 8999998754221 13467899999999999763 445566666665544332 334554322
Q ss_pred cccccccchhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 430 NSIQYSELATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 430 ~~~~~~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
. .+.++++.++|.+. .+++..++||++ |+++||.++|+++.+.
T Consensus 231 ~---~~~l~~e~~rg~g~------~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei 280 (570)
T PRK05675 231 G---AGVLVTEGCRGEGG------YLINKHGERFMERYAPNAKDLAGRDVVARSMVKEI 280 (570)
T ss_pred C---CceEeeccccCCCc------EEECCCCCCcccccCcccccccchhHHHHHHHHHH
Confidence 1 23455666676664 345567778775 6899999999998874
No 56
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.67 E-value=7.5e-16 Score=167.29 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=80.6
Q ss_pred CceeEccCCccChHHHHHHHHHHHHhhhhcCCCCCCCCeEEEEE--EeeecC-ceeccCCCCCccccCcCCeeEccccch
Q 005273 583 LGVKAASLHELFPTHLTDALKHSISMFDEELPGFISDTGLLHGV--ETRTSC-PLQIPRNNETCESTSLKGLYPVGEGAG 659 (704)
Q Consensus 583 ~~~~~~~l~~~~p~~~~~~l~~~l~~~~~~~~G~~~~~a~~~Gv--e~~~~~-p~~i~~~~~tles~~i~GLy~~GE~aG 659 (704)
..++..+++..||..++.++.++ +||+.+++.+.+|+ +.++.+ |..+. +|||++.++|||||||+.|
T Consensus 272 ~~~~~~Gfqt~l~~~~Q~~~~r~-------Ipgle~a~~~r~G~~~~~~~i~~p~~l~---~~l~~k~~~~l~~AGqi~g 341 (436)
T PRK05335 272 TLYNIVGFQTKLKWGEQKRVFRM-------IPGLENAEFVRYGVMHRNTFINSPKLLD---PTLQLKKRPNLFFAGQITG 341 (436)
T ss_pred CeEecccccCCCCHHHHHHHHhc-------ccchhceEEEeceEEeeccccCChhhCc---hhccccCCCCEEeeeeecC
Confidence 45667789999999988777654 58999999998888 445544 65543 7899999999999999988
Q ss_pred hhHH---HHHHHHHHHHHHHHHHhhcCCCcchhhhhhhh
Q 005273 660 YAGG---IVSAAADGMYAGFAVAKDFGLFPADIESILGK 695 (704)
Q Consensus 660 ~~GG---i~sA~~~G~~Aa~~i~~~~~~~~~~~~~~~g~ 695 (704)
..|+ +++++++|++|+..+..+.++.+.+.++ ||.
T Consensus 342 ~~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~-iG~ 379 (436)
T PRK05335 342 VEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGA 379 (436)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCc-HHH
Confidence 7766 5677888888888877777778888766 885
No 57
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.66 E-value=8.7e-15 Score=163.71 Aligned_cols=166 Identities=20% Similarity=0.174 Sum_probs=103.8
Q ss_pred EEcCCHHHHHHHHHHHHcCCcEEEEEeCccc--cccccchhHHHHH-----Hhhcc-cc--c-cccccCCcccccCcchh
Q 005273 224 VVGGGPSGLFASLVLAELGADVTLIERGQAV--EQRGRDIGALVVR-----RMLEM-ES--N-FCFGEGGAGTWSDGKLV 292 (704)
Q Consensus 224 vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~--~~~~~~~~~~~~~-----~~l~~-~~--n-~~~g~gG~~~~sdg~l~ 292 (704)
|||+|.+|+.||+.+++.|.+|+|+||.+.. ++........... ..... .+ . +..-....+...+..++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence 7999999999999999999999999998752 3322111110000 00000 00 0 00000000112334444
Q ss_pred hhhccCchhHHHHHHHHHHcCCCceeecCCcc-cc-----CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe--CCE
Q 005273 293 TRIGRNSNSVLAVMNTLVHFGAPANILVDGKS-HL-----GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE--NAR 364 (704)
Q Consensus 293 ~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~-~~-----g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~--~g~ 364 (704)
..+.... .+.++|+.++|+++.....+.. .. .......+++.|.+.+++.|++|+++++|++|+.+ +++
T Consensus 81 ~~~~~~s---~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~ 157 (432)
T TIGR02485 81 RLGIGRG---SRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGA 157 (432)
T ss_pred HHHHhcc---hhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCe
Confidence 4443332 3456788889988765433321 10 01234568899999999999999999999999876 578
Q ss_pred EEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 365 IVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 365 v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++||...+. ...+.|+.||+|||+++.+
T Consensus 158 v~gv~~~~~-------~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 158 HDGPLTTVG-------THRITTQALVLAAGGLGAN 185 (432)
T ss_pred EEEEEEcCC-------cEEEEcCEEEEcCCCcccC
Confidence 888877432 1478999999999998864
No 58
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.64 E-value=6.6e-15 Score=170.12 Aligned_cols=68 Identities=28% Similarity=0.452 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecC-eEEEcCCCChHHHHHHHHh
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFD-AVILAVGHSARDIYEMLVS 406 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad-~VVlAtG~~s~~~~~~l~~ 406 (704)
.++..|.+.+++.|++|++++.|++|+.++++|+||++.+.++ ...+.++ .||+|||+++.+. +++..
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~-----~~~i~a~k~VVlAtGg~~~n~-~~~~~ 283 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGG-----ERRITARRGVVLACGGFSHDL-ARIAR 283 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCc-----eEEEEeCCEEEEcCCCccchH-HHHHH
Confidence 4666788888899999999999999999889999999876432 2457785 8999999998654 34443
No 59
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.64 E-value=6.3e-15 Score=170.04 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecC-eEEEcCCCChHHHHHHHHhCCC
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFD-AVILAVGHSARDIYEMLVSHNI 409 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad-~VVlAtG~~s~~~~~~l~~~gi 409 (704)
++..|.+.+++.|++|++++++++|+.+ +++|+||.+.... ....+.|+ .||||||+++.+ .+|++++..
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~-----~~~~i~a~~aVilAtGGf~~N-~em~~~y~p 286 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREG-----RTLRIGARRGVILATGGFDHD-MDWRKEYLP 286 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCC-----cEEEEEeceeEEEecCcccCC-HHHHHHhCC
Confidence 4556777888889999999999999986 5899999886432 23568897 799999999875 356666543
No 60
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=99.63 E-value=3e-15 Score=172.28 Aligned_cols=225 Identities=19% Similarity=0.169 Sum_probs=137.3
Q ss_pred HHHcCCcEEEEEeCccccccccchhHHHHHHhhc-cccccc--c--ccCCcccccCcchhhhhccCchhHHHHHHHHHHc
Q 005273 238 LAELGADVTLIERGQAVEQRGRDIGALVVRRMLE-MESNFC--F--GEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHF 312 (704)
Q Consensus 238 l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~-~~~n~~--~--g~gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~ 312 (704)
|++.|.+|+|+||....++.+....+.+....-+ .+.... + .........|.+++..+..+ ..+.++|+.++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~---s~~~i~~L~~~ 77 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQ---APEAVLELEHM 77 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHHHHHHHhc
Confidence 4567999999999887654332221111000000 001000 0 00011123455555555443 34566778889
Q ss_pred CCCceeecCCcc----c------------------cCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEE
Q 005273 313 GAPANILVDGKS----H------------------LGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKV 370 (704)
Q Consensus 313 G~~~~~~~~g~~----~------------------~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~ 370 (704)
|+++....++.. + ........+++.|.+.+++.||+|+.++.+++|+.++++|+||..
T Consensus 78 Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~ 157 (565)
T TIGR01816 78 GMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIA 157 (565)
T ss_pred CcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEE
Confidence 999865333211 0 111123468899999999999999999999999988899999987
Q ss_pred cCCCCCCCCceeEEecCeEEEcCCCChH-------------HHHHHHHhCCCcccccceeeEEEEecchhhhcccccccc
Q 005273 371 SDSKDNSQSDIQKLGFDAVILAVGHSAR-------------DIYEMLVSHNINLVPKDFAVGLRMEHPQELINSIQYSEL 437 (704)
Q Consensus 371 ~~~~~~~~~~~~~i~Ad~VVlAtG~~s~-------------~~~~~l~~~gi~l~~~~~avG~~~~~p~~~~~~~~~~~l 437 (704)
.+..+ +....+.|++||||||+++. +.+.|+.+.|..+....+ .+.||..+.. .+.+
T Consensus 158 ~~~~~---g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~----~q~~pt~~~~---~~~l 227 (565)
T TIGR01816 158 YCLET---GEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEF----VQFHPTGIAG---AGCL 227 (565)
T ss_pred EEcCC---CcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcc----eEEccCcccC---CceE
Confidence 54221 12457899999999999753 455666666666654432 3345543221 2234
Q ss_pred hhhhcccCCCCccccccceecccCCCCC-------CCCccccchhhhhhhh
Q 005273 438 ATEVQKGRGKVPVADYKVAKYVSGEDGD-------ALSGVVTTNRSCYSFC 481 (704)
Q Consensus 438 ~~e~~~g~g~~~~~d~~~~~~~~~~~~~-------e~a~Rd~~~r~v~~fc 481 (704)
.++.+++.+. .+++..++||++ |+++||.++|+++.+.
T Consensus 228 ~~e~~r~~g~------~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~ 272 (565)
T TIGR01816 228 ITEGCRGEGG------ILINANGERFMERYAPTAKDLASRDVVSRSMTLEI 272 (565)
T ss_pred EeccccCCce------EEECCCCCCCccccCccccccCchhHHHHHHHHHH
Confidence 5555666554 455667788876 6899999999998764
No 61
>PRK12839 hypothetical protein; Provisional
Probab=99.62 E-value=2e-14 Score=165.45 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHh
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVS 406 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~ 406 (704)
.++..|.+.+++.|++|++++.|++|+.+ +++|+||.+.+.++. ...+.++.||||||+++.+. +++..
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~----~~i~aak~VVLAtGGf~~n~-~~~~~ 284 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA----VTVEATRGVVLATGGFPNDV-DRRKE 284 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc----EEEEeCCEEEEcCCCcccCH-HHHHH
Confidence 45677888889999999999999999875 689999988654332 23344589999999998754 34443
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.62 E-value=6e-16 Score=185.97 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=124.1
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+...+|++...|.++.++ |-..|. + .+++|.+|+|+||...+||.+|.+. ++||+|+
T Consensus 213 ~CP~~~~Ip~~i~~i~~g~~~~A~~~i~-------------~----~np~p~~~GrVCp~~~~CE~~C~~~--~~pV~I~ 273 (944)
T PRK12779 213 GCPVKIHIPEMLDLLGNGKHREALELIE-------------S----CNPLPNVTGRVCPQELQCQGVCTHT--KRPIEIG 273 (944)
T ss_pred CCcCCCcHHHHHHHHHCCCHHHHHHHHH-------------H----hCChhHHhcCcCCCccCHHHhccCC--CcCcchh
Confidence 677777779998888777766 433321 1 2569999999999777999999987 5799998
Q ss_pred cccccccchhhhhhhhccCC------CC-ccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch
Q 005273 189 HDCKKVSDDTLLRKEISSGS------EG-LYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI 261 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~ 261 (704)
.. ++++ +|.....+. +. +....+.++++|+|||||||||+||+.|+++||+|+|||+.+.+|+.
T Consensus 274 ~l----er~i-~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~---- 344 (944)
T PRK12779 274 QL----EWYL-PQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV---- 344 (944)
T ss_pred HH----HHHH-HHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce----
Confidence 62 1111 111110010 00 01112345799999999999999999999999999999999876531
Q ss_pred hHHHHHHhhccccccccccCCcccccCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHH
Q 005273 262 GALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQH 341 (704)
Q Consensus 262 ~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~ 341 (704)
..+|+|...+ ...+++...+.
T Consensus 345 ------------------------------------------------l~yGIP~~rl-----------p~~vi~~~i~~ 365 (944)
T PRK12779 345 ------------------------------------------------LRYGIPEFRL-----------PNQLIDDVVEK 365 (944)
T ss_pred ------------------------------------------------EEccCCCCcC-----------hHHHHHHHHHH
Confidence 1234443221 12477777888
Q ss_pred HHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 342 LQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 342 l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
+++.||+|++|+.+-.- +.+.+. ....+|+||+|||++
T Consensus 366 l~~~Gv~f~~n~~vG~d---------it~~~l--------~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 366 IKLLGGRFVKNFVVGKT---------ATLEDL--------KAAGFWKIFVGTGAG 403 (944)
T ss_pred HHhhcCeEEEeEEeccE---------EeHHHh--------ccccCCEEEEeCCCC
Confidence 99999999999876211 222221 234689999999986
No 63
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.62 E-value=9.4e-14 Score=159.78 Aligned_cols=186 Identities=20% Similarity=0.209 Sum_probs=107.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc--cccccccchh-HHHHH-Hhhcc----ccccc--cc--cCCcccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ--AVEQRGRDIG-ALVVR-RMLEM----ESNFC--FG--EGGAGTW 286 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~--~~~~~~~~~~-~~~~~-~~l~~----~~n~~--~g--~gG~~~~ 286 (704)
..||+|||+|.|||.||+.+++.|.+|+|+||.+ ..|+.+.... .++.. ..... ..+.. +. .......
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~~ 83 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGFD 83 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCCC
Confidence 5799999999999999999999999999999998 5555432111 11100 00000 00000 00 0000001
Q ss_pred cCcch-----hhhhccCchhHHHHHHHHHHcCCCceeecC----------Cc------cccCCCChHHHHHHHHHHHH--
Q 005273 287 SDGKL-----VTRIGRNSNSVLAVMNTLVHFGAPANILVD----------GK------SHLGTDRLIPLLRNFRQHLQ-- 343 (704)
Q Consensus 287 sdg~l-----~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~----------g~------~~~g~~~~~~l~~~L~~~l~-- 343 (704)
.+..+ +..+... ...+.++|+.+.|+++..... ++ .|........+++.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~ 161 (549)
T PRK12834 84 RPEDHWPRQWAEAYVDF--AAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREA 161 (549)
T ss_pred CccccchHHHHHHHHHh--CCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHH
Confidence 11111 1111111 024566778889988754221 00 01111122346777776665
Q ss_pred -HC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC----------CCCceeEEecCeEEEcCCCChHHHHHHHHhC
Q 005273 344 -RL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDN----------SQSDIQKLGFDAVILAVGHSARDIYEMLVSH 407 (704)
Q Consensus 344 -~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~----------~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~ 407 (704)
+. |++|++++++++|+.++++|+||.+.+.... .......+.|+.||||||+++.+ .+|++++
T Consensus 162 ~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n-~em~~~~ 236 (549)
T PRK12834 162 AARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN-HELVRRN 236 (549)
T ss_pred HHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccC-HHHHHHh
Confidence 23 5999999999999998899999986321000 00123578999999999999875 4666654
No 64
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.62 E-value=9.3e-15 Score=168.07 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecC-eEEEcCCCChHHHHHHHHhCCCc-
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFD-AVILAVGHSARDIYEMLVSHNIN- 410 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad-~VVlAtG~~s~~~~~~l~~~gi~- 410 (704)
.+...|.+.+++.|++++++++|++|+.++++|+||.+.... +...+.|+ .||||||++..+. +|++.+...
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g-----~~~~i~A~~~VIlAtGG~~~n~-~m~~~~~~~~ 282 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESG-----EPQLIRARRGVILASGGFEHNE-QMRAKYQRAP 282 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCC-----cEEEEEeceeEEEccCCcCcCH-HHHHHhcCCc
Confidence 466778888888999999999999999888999999886422 23578896 7999999988642 444443211
Q ss_pred -----ccccceeeEE------EEecchhhhcccccccchhhhcccCCCCc----cccccceecccCCCCCCCCccccchh
Q 005273 411 -----LVPKDFAVGL------RMEHPQELINSIQYSELATEVQKGRGKVP----VADYKVAKYVSGEDGDALSGVVTTNR 475 (704)
Q Consensus 411 -----l~~~~~avG~------~~~~p~~~~~~~~~~~l~~e~~~g~g~~~----~~d~~~~~~~~~~~~~e~a~Rd~~~r 475 (704)
....+...|. .+......++..++.+.... ..+..... .....+++..++||++|..+++...+
T Consensus 283 ~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~~~p~~~~-~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~~~~~ 361 (557)
T PRK07843 283 IGTEWTVGAKANTGDGILAGEKLGAALDLMDDAWWGPTIPL-PGGPWFALSERNLPGSIIVNMSGKRFMNESAPYVEAVH 361 (557)
T ss_pred ccCcccCCCCCCCcHHHHHHHHcCCCccCchhhccCCcccc-CCCcchhhhhhccCCeEEECCCCCcccCCCCcHHHHHH
Confidence 0111122221 11111111222222221100 00000000 01135778889999999998887776
Q ss_pred hhh
Q 005273 476 SCY 478 (704)
Q Consensus 476 ~v~ 478 (704)
.++
T Consensus 362 a~~ 364 (557)
T PRK07843 362 HMY 364 (557)
T ss_pred HHH
Confidence 655
No 65
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.60 E-value=4.5e-14 Score=163.27 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEec-CeEEEcCCCChHHH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGF-DAVILAVGHSARDI 400 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~A-d~VVlAtG~~s~~~ 400 (704)
.++..|.+.+++.|++|+++++|++|+.++++|+||.+.+.++ ...+.| +.||+|+|+++.+.
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-----~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGG-----LQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCc-----EEEEEeCCEEEEcCCCcccCH
Confidence 3667888899999999999999999988889999998865322 246889 99999999998754
No 66
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.59 E-value=1.1e-13 Score=160.03 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEec-CeEEEcCCCChHHHHHHHHhCC
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGF-DAVILAVGHSARDIYEMLVSHN 408 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~A-d~VVlAtG~~s~~~~~~l~~~g 408 (704)
.++..|.+.+++.|+++++++.|++|+.++++|+||.+.+.. +...+.| +.||||||+++.+ .+|++++.
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g-----~~~~i~A~~~VVlAtGg~~~n-~em~~~~~ 292 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGG-----VRRRIRARGGVVLATGGFNRH-PQLRRELL 292 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCC-----eEEEEEccceEEECCCCcccC-HHHHHHhC
Confidence 477889999999999999999999998888999999886532 1346776 7999999999875 36666553
No 67
>PRK12831 putative oxidoreductase; Provisional
Probab=99.56 E-value=4.9e-15 Score=166.67 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=89.5
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||...-.|++...|-++.++ |-..|. . .+++|.+|+|+||.+++||.+|.++..++||+|+
T Consensus 53 ~CP~~~~i~~~~~~~~~~~~~~a~~~~~------------~-----~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~ 115 (464)
T PRK12831 53 GCPVSINIPGFISKLKEGDFEEAAKIIA------------K-----YNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIG 115 (464)
T ss_pred hCCCCCCHHHHHHHHHCCCHHHHHHHHH------------H-----hCCchhhhhccCCCCCChHHHhcCCCCCCCeehh
Confidence 466665558887777776666 433321 1 2469999999999777999999999889999998
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-... .|.....+.. +....+.+.++|+|||||||||+||+.|++.|++|+|+|+.+.+|
T Consensus 116 ~l~r~~-----~~~~~~~~~~-~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 116 KLERFV-----ADWARENGID-LSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred HHHHHH-----HHHHHHcCCC-CCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 622211 2233322332 222234567899999999999999999999999999999987654
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.56 E-value=4e-15 Score=174.49 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=90.5
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+....|++...|.++.++ |...|. + .++||.++||+||.+++||.+|.++..++||+|+
T Consensus 239 ~CP~~~~i~~~~~~~~~g~~~~A~~~~~-------------~----~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~ 301 (654)
T PRK12769 239 TCPLHNHIPQWIELVKAGNIDAAVELSH-------------Q----TNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIG 301 (654)
T ss_pred cCCCCCcHHHHHHHHHCCCHHHHHHHHH-------------H----hCCchhHhcccCCCCCChHHhccCCCCCCCeecC
Confidence 355555569998887777765 544421 1 2469999999999888999999999888999999
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-. ++ .|.....++.......+...++|+|||+|||||+||..|++.|++|+|+|+.+.+|
T Consensus 302 ~l~r----~~-~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 302 NIER----YI-SDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred HHHH----HH-HHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 7222 11 23333333321111122357899999999999999999999999999999987764
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.56 E-value=5.5e-15 Score=179.23 Aligned_cols=122 Identities=23% Similarity=0.178 Sum_probs=89.7
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+....|++...|.++.++ |...|. . .+++|.+|+|+||.+++||.+|.++..++||+|+
T Consensus 344 ~CP~~~dip~~~~~i~~g~~~~A~~~i~------------~-----~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~ 406 (1006)
T PRK12775 344 GCPVQIDIPVFIRHVVVRDFDGALEVIY------------E-----ASIFPSICGRVCPQETQCEAQCIIAKKHESVGIG 406 (1006)
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHH------------H-----hCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeec
Confidence 567776669998888777766 444321 1 2469999999999778999999999889999999
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-. ++ +|.....+.. .+..+.+.++|+|||||||||+||+.|+++|++|+|||+.+.+|
T Consensus 407 ~ler----~~-~d~~~~~~~~--~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 407 RLER----FV-GDNARAKPVK--PPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred HHHH----HH-HHHHHHcCCC--CCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 7222 11 2222211221 11122347899999999999999999999999999999987764
No 70
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.55 E-value=2e-14 Score=170.61 Aligned_cols=123 Identities=21% Similarity=0.216 Sum_probs=87.2
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||...-.|++...|-++.++ |-..|. . .+++|.+|||+|| ++||.+|+|+..++||+|+
T Consensus 452 ~CP~~~dIp~yi~li~~g~~~~A~~~I~------------~-----~nPlP~icGrVCp--h~Ce~~C~R~~~d~pV~I~ 512 (1019)
T PRK09853 452 ACPINQDIPEYIRLVGEGRYAEALELIY------------Q-----RNALPAITGHICD--HQCQYNCTRLDYDEAVNIR 512 (1019)
T ss_pred CCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCChhhHhhCcCC--chhHHHhcCCCCCCCeecc
Confidence 678776668887776666655 544421 1 2469999999988 7999999999899999999
Q ss_pred cccccccchhhhhhhhccCCCCccCC-CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNY-PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
...... .|............+ ++.++++|+|||||||||+||+.|+++|++|+|+|+.+.+|+
T Consensus 513 ~Lkr~a-----~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 513 ELKKVA-----LEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred HHHHHH-----HhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 732211 111111111111111 234678999999999999999999999999999999887653
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.54 E-value=6.5e-15 Score=165.93 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||...-.|++...|-++.++ |.+.|. . .++++.+|+|+||.+++||..|.|+..++||+|+
T Consensus 53 ~CP~~~~~~~~~~~~~~g~~~~a~~~~~------------~-----~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~ 115 (467)
T TIGR01318 53 KCPVHNAIPQWLQLVQEGRIDEAAELSH------------Q-----TNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIG 115 (467)
T ss_pred cCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCCchHhhcccCCCCCChHHhCcCCCCCCCccHH
Confidence 456665558887777666665 544421 1 2469999999999889999999999888999998
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-... .|.....++.......+.+.++|+|||+||+||+||..|+++|++|+|+|+.+.+|
T Consensus 116 ~l~r~~-----~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 116 NLERYI-----TDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred HHHHHH-----HHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 632211 12222222211111123357899999999999999999999999999999987764
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.54 E-value=6e-15 Score=172.31 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=90.6
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+....|++...|.++.++ |...|. . .++||.+++|+||.+++||.+|.++..++||+|+
T Consensus 222 ~CP~~~~i~~~~~~~~~g~~~~a~~~~~------------~-----~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~ 284 (639)
T PRK12809 222 HCPLHNAIPDYIRLVQEGKIIEAAELCH------------Q-----TSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIG 284 (639)
T ss_pred cCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCCcchhhcccCCCCCChHHhccCCCcCCCcChh
Confidence 455555569998887777765 544431 1 1469999999999889999999999888999999
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..- +++ .|.....++.......+.+.++|+|||+||+||++|+.|++.|++|+|+|+.+.+|
T Consensus 285 ~l~----r~~-~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 285 NLE----RYI-TDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred HHH----HHH-HHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 722 111 23333334322221122357899999999999999999999999999999998764
No 73
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.51 E-value=1.5e-14 Score=164.60 Aligned_cols=121 Identities=23% Similarity=0.324 Sum_probs=100.9
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||..+++|.|.+-+.+..+. |= ...+.+| .+|++.+|+|| .|||.+|..+....||.|.
T Consensus 1699 gcpl~n~ip~~nelvfk~~wk~al----------------~~ll~tn-nfpeftgrvcp--apcegactlgiie~pv~ik 1759 (2142)
T KOG0399|consen 1699 GCPLGNIIPKFNELVFKNQWKEAL----------------EQLLETN-NFPEFTGRVCP--APCEGACTLGIIEPPVGIK 1759 (2142)
T ss_pred CCccccccccHHHHHHHHHHHHHH----------------HHHHhhC-CCccccCccCC--CCcCcceeeecccCCcccc
Confidence 788888999999888877654 31 1222233 49999999998 8999999998888999987
Q ss_pred c-ccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 H-DCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~-~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
. .|+. .|.++..||..|-++...++++|+|||+|||||.||-.|-+.||.|+|+||.+.+|
T Consensus 1760 sie~ai------id~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1760 SIECAI------IDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred chhhHH------HHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 6 5765 46778889988877767788999999999999999999999999999999999876
No 74
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.51 E-value=3.3e-14 Score=169.50 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=87.5
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||...-.|++...|-++.++ |-..|. . .+++|.+|+|+|| ++||..|+|+..++||+|+
T Consensus 450 ~CP~~~dIp~yi~~i~~g~~~~A~~vi~------------~-----~nPlp~icGrVC~--h~Ce~~C~R~~~d~pV~I~ 510 (1012)
T TIGR03315 450 GCPINQDIPEYIRLVGEKRYLEALEVIY------------D-----KNPLPAITGTICD--HQCQYKCTRLDYDESVNIR 510 (1012)
T ss_pred CCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCChhhHhhCcCC--cchHHHhcCCCCCCCCccc
Confidence 678776568887777666655 544421 1 2469999999988 7999999999999999999
Q ss_pred cccccccchhhhhhhhccCCCCcc-CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLY-NYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
...... .|........... +.++...++|+|||||||||+||+.|+++|++|+|+|+.+.+|+
T Consensus 511 ~Lkr~a-----~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 511 EMKKVA-----AEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred HHHHHH-----HhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 732221 1111111111111 11234568999999999999999999999999999999887653
No 75
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.48 E-value=3.5e-14 Score=160.35 Aligned_cols=122 Identities=25% Similarity=0.278 Sum_probs=88.2
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||.....|++...|-++.++ |.+.|. . .++++.+|+|+|| ++||..|.+...++||+|+
T Consensus 57 ~CP~~~~~~~~~~~~~~~~~~~a~~~~~------------~-----~~p~~~~~g~vC~--~~Ce~~C~~~~~~~~v~i~ 117 (471)
T PRK12810 57 GCPVHNYIPEWNDLVYRGRWEEAAERLH------------Q-----TNNFPEFTGRVCP--APCEGACTLNINFGPVTIK 117 (471)
T ss_pred cCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCChhHHhcCcCC--chhHHhccCCCCCCCccHH
Confidence 567776678888877777665 555432 1 2469999999998 7899999999889999998
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-... .|.....++..+...++...++|+|||+||+|++||..|++.|++|+|+|+.+.+|
T Consensus 118 ~l~r~~-----~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 118 NIERYI-----IDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred HHHHHH-----HHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 632211 12222112111222233457899999999999999999999999999999987764
No 76
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.47 E-value=5.1e-14 Score=167.68 Aligned_cols=124 Identities=27% Similarity=0.251 Sum_probs=87.6
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccC-Cceee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASG-DLINI 187 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~~v~i 187 (704)
.||.....|++...|-++.++ |...|. . .+++|.+|+|+||..++||..|.+...+ +||+|
T Consensus 342 ~Cp~~~~i~~~~~~~~~g~~~~a~~~~~------------~-----~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i 404 (752)
T PRK12778 342 GCPVGIDIPRFIKNIERGNFLEAAKILK------------E-----TSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAI 404 (752)
T ss_pred cCcCCCCHHHHHHHHHCCCHHHHHHHHH------------h-----hCCchhHhcCcCCCcCchHHhcccCCCCCCCcCH
Confidence 345555558888887777766 544421 1 2469999999999888999999998877 89998
Q ss_pred ecccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 188 IHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 188 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
...-...+ |.....+........+.+.++|+|||||||||+||..|+++|++|+|+|+.+.+|
T Consensus 405 ~~l~r~~~-----d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 405 GYLERFVA-----DYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred HHHHHHHH-----HHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 86322221 2111111111111123457899999999999999999999999999999976654
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.45 E-value=1e-13 Score=156.97 Aligned_cols=122 Identities=25% Similarity=0.266 Sum_probs=87.7
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+....|++...+.++.++ |...|. + .+++|.+|+|+|| ++||..|.++..+++|+|.
T Consensus 57 ~CP~~~~i~~~~~~~~~g~~~~a~~~~~-------------~----~~p~p~~~grvC~--~~Ce~~C~~~~~~~~v~I~ 117 (485)
T TIGR01317 57 GCPLNNLIPEFNDLVFRGRWKEALDRLH-------------A----TNNFPEFTGRVCP--APCEGACTLGISEDPVGIK 117 (485)
T ss_pred CCCCCCcHHHHHHHHHCCCHHHHHHHHH-------------h----hCCchhHHhCcCC--hhhHHhccCCCCCCCcchh
Confidence 677776668888877777766 544421 1 2469999999998 7999999999888999998
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..-. +. .|......+..++...+...++|+|||+|++|++||..|++.|++|+|+|+.+.++
T Consensus 118 ~l~r----~~-~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 118 SIER----II-IDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG 179 (485)
T ss_pred HHHH----HH-HHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 6211 11 12222222222222223446899999999999999999999999999999987654
No 78
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.44 E-value=3.4e-12 Score=132.35 Aligned_cols=153 Identities=26% Similarity=0.348 Sum_probs=105.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..+||+||||||+|+.||+.|++.|++|+|+|+...+++.. |..+.+....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~---------------------------~~gg~~~~~~-- 74 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM---------------------------WGGGMLFNKI-- 74 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc---------------------------ccCccccccc--
Confidence 45899999999999999999999999999999988765321 0000000000
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCC-EEEEEEEcCCC--
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENA-RIVGVKVSDSK-- 374 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g-~v~GV~~~~~~-- 374 (704)
.......+++.++|+++.....+... .....+...|.+.+.+.|++++++++|.++..+++ ++.||.+....
T Consensus 75 --~v~~~~~~~l~~~gv~~~~~~~g~~~---vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~ 149 (257)
T PRK04176 75 --VVQEEADEILDEFGIRYKEVEDGLYV---ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVE 149 (257)
T ss_pred --cchHHHHHHHHHCCCCceeecCccee---ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEcccccc
Confidence 00113456677888887654333221 22356788899999999999999999999988666 89998875321
Q ss_pred -CCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 375 -DNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 375 -~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
.....+...++|+.||+|||+++.....+.
T Consensus 150 ~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 150 MAGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred ccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 000112357999999999999986443333
No 79
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.43 E-value=5e-12 Score=130.75 Aligned_cols=157 Identities=26% Similarity=0.311 Sum_probs=106.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..+||+||||||+||.||+.|++.|++|+|+||...+|+.. |..+.+...+.-
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~---------------------------~~gg~~~~~~~~ 72 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS---------------------------WGGGMLFSKIVV 72 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc---------------------------cCCCcceecccc
Confidence 46899999999999999999999999999999998765321 111111110000
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCC--EEEEEEEcCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENA--RIVGVKVSDSKD 375 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g--~v~GV~~~~~~~ 375 (704)
.....+++.++|+++.....+. ... ....+.+.|.+.+.+.|+++++++.|.++..+++ ++.||.+.....
T Consensus 73 ----~~~~~~~l~~~gi~~~~~~~g~--~~~-~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v 145 (254)
T TIGR00292 73 ----EKPAHEILDEFGIRYEDEGDGY--VVA-DSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAI 145 (254)
T ss_pred ----cchHHHHHHHCCCCeeeccCce--EEe-eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccc
Confidence 0123346667888765332221 111 2246788899999999999999999999998777 699998853210
Q ss_pred C---CCCceeEEecCeEEEcCCCChHHHHHHHHhCC
Q 005273 376 N---SQSDIQKLGFDAVILAVGHSARDIYEMLVSHN 408 (704)
Q Consensus 376 ~---~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~g 408 (704)
. ...+...++|+.||.|||+.+.....+.+..+
T Consensus 146 ~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~ 181 (254)
T TIGR00292 146 ELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIV 181 (254)
T ss_pred cccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcC
Confidence 0 00123579999999999998865444444433
No 80
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.43 E-value=1.7e-13 Score=153.93 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccc----cCCc
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRA----SGDL 184 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~----~~~~ 184 (704)
.||...-.|++...+-++.+. |-..|. . .+++|.+|+|+||...+||.+|.+.. .++|
T Consensus 41 ~CP~~~~i~~~~~~~~~g~~~~A~~~~~------------~-----~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~ 103 (449)
T TIGR01316 41 GCPVHVPIPEFIAKIQEGDFKGAVDIIK------------T-----TSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKP 103 (449)
T ss_pred hCCCCCCHHHHHHHHHCCCHHHHHHHHH------------H-----hCChhHHhccCCCCccchHhhCcCCCcCCCCCCC
Confidence 566665558887766666554 443321 1 24699999999996669999998765 7899
Q ss_pred eeeecccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 185 INIIHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 185 v~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
|+|+..-... .|.....+........+...++|+|||+|++||+||..|++.|++|+|+|+.+.+|
T Consensus 104 v~i~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 104 VSIGALERFV-----ADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred ccHHHHHHHH-----HhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 9998632221 12222122221111223457899999999999999999999999999999987654
No 81
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.39 E-value=2.7e-13 Score=158.59 Aligned_cols=122 Identities=19% Similarity=0.284 Sum_probs=86.6
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||+..-.|++...|-++.++ |...|. . .+++|.+|||+|| ++||..|.+...++||+|+
T Consensus 107 ~CP~~~~~~~~~~~~~~g~~~~a~~~~~------------~-----~~p~p~~~grvC~--~~Ce~~C~r~~~~~~v~i~ 167 (652)
T PRK12814 107 ACPAGCNIPGFIAAIARGDDREAIRIIK------------E-----TIPLPGILGRICP--APCEEACRRHGVDEPVSIC 167 (652)
T ss_pred CCCCCCcHHHHHHHHHCCCHHHHHHHHH------------h-----hCCccceeeCCcC--chhhHHHcCCCCCCCcchh
Confidence 678776668887777777766 544421 1 2469999999998 6999999998888998865
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
. ++... .|.....+.......++...++|+|||+||+||+||+.|++.|++|+|+|+.+.+|
T Consensus 168 ~---l~r~~--~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 168 A---LKRYA--ADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred H---HHHHH--HHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4 33211 11111111111112234457899999999999999999999999999999988765
No 82
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.5e-12 Score=121.79 Aligned_cols=148 Identities=28% Similarity=0.378 Sum_probs=106.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
..||+|||+||+||+||++||++|.+|+|+||.-.+|+ +.|..+-+...+.-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG---------------------------G~w~GGmlf~~iVv- 81 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG---------------------------GIWGGGMLFNKIVV- 81 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC---------------------------cccccccccceeee-
Confidence 56999999999999999999999999999999977653 23333333222111
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCC-EEEEEEEcCCCC--
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENA-RIVGVKVSDSKD-- 375 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g-~v~GV~~~~~~~-- 375 (704)
.....+.|.++|++.....++. -......+...|...+.+.|++|+..+.|+|++..++ +|.||.++=.--
T Consensus 82 ---~~~a~~iL~e~gI~ye~~e~g~---~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~ 155 (262)
T COG1635 82 ---REEADEILDEFGIRYEEEEDGY---YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQM 155 (262)
T ss_pred ---cchHHHHHHHhCCcceecCCce---EEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhh
Confidence 1233457788999877554442 1223345777888888889999999999999999988 899998753210
Q ss_pred -CCCCceeEEecCeEEEcCCCChHHH
Q 005273 376 -NSQSDIQKLGFDAVILAVGHSARDI 400 (704)
Q Consensus 376 -~~~~~~~~i~Ad~VVlAtG~~s~~~ 400 (704)
....+...++|+.||-|||+-+.-.
T Consensus 156 ~~lhvDPl~i~a~~VvDaTGHda~v~ 181 (262)
T COG1635 156 AGLHVDPLTIRAKAVVDATGHDAEVV 181 (262)
T ss_pred cccccCcceeeEEEEEeCCCCchHHH
Confidence 0112345799999999999987643
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.39 E-value=2.7e-13 Score=150.43 Aligned_cols=185 Identities=25% Similarity=0.187 Sum_probs=126.5
Q ss_pred CCCCCCCChhhHHHHHhcccccccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeeec
Q 005273 110 QFPVASMLPAEAFTVVRKSFDARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINIIH 189 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~DaR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~~ 189 (704)
+||+...+|++...|.++.+...-+ .+.+ + +.++.+++|+||..+.||..|.....+.|++|++
T Consensus 35 ~cp~~~~IP~~~~lv~~g~~~~a~~------------~i~~---t-n~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~ 98 (457)
T COG0493 35 GCPVHNDIPEPIGLVREGVDHEAIK------------LIHK---T-NNLPAITGRVCPLGNLCEGACVLGIEELPVNIGA 98 (457)
T ss_pred CCcCCCcCCCHHHHHhcCCcHHHHH------------HHHH---h-CCCccccCccCCCCCceeeeeeeccCCCchhhhh
Confidence 4666667788865554444332111 0111 1 3489999999998888999999877788999886
Q ss_pred ccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHh
Q 005273 190 DCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRM 269 (704)
Q Consensus 190 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~ 269 (704)
. .+++ .|.....++.........+.++|+|||+|||||.||..|++.|+.|+++|+.+..|+.
T Consensus 99 l----e~~i-~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl------------ 161 (457)
T COG0493 99 L----ERAI-GDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL------------ 161 (457)
T ss_pred H----HHHH-hhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee------------
Confidence 1 1111 2334433443333222445689999999999999999999999999999999887642
Q ss_pred hccccccccccCCcccccCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEE
Q 005273 270 LEMESNFCFGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTI 349 (704)
Q Consensus 270 l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i 349 (704)
..+|+|...+.. .+++..++.|++.|++|
T Consensus 162 ----------------------------------------l~yGIP~~kl~k-----------~i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 162 ----------------------------------------LLYGIPDFKLPK-----------DILDRRLELLERSGVEF 190 (457)
T ss_pred ----------------------------------------EEecCchhhccc-----------hHHHHHHHHHHHcCeEE
Confidence 234454433322 47888889999999999
Q ss_pred EeCeEEE-EEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 350 KFGTRVD-DLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 350 ~~~t~V~-~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
+.++++- ++..++ ..-..|+|++|+|...
T Consensus 191 ~~~~~vG~~it~~~-------------------L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 191 KLNVRVGRDITLEE-------------------LLKEYDAVFLATGAGK 220 (457)
T ss_pred EEcceECCcCCHHH-------------------HHHhhCEEEEeccccC
Confidence 9999874 443321 1123399999999865
No 84
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.37 E-value=5.7e-13 Score=150.13 Aligned_cols=123 Identities=22% Similarity=0.226 Sum_probs=84.8
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||...-.|++...+-++.++ |...|. . .+++|.+|+|+||....|+..|.+...++|++|.
T Consensus 53 ~cp~~~~~~~~~~~~~~~~~~~a~~~~~------------~-----~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~ 115 (457)
T PRK11749 53 ACPVSIDIPEFIRLIAEGNLKGAAETIL------------E-----TNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIG 115 (457)
T ss_pred cCCCcCCHHHHHHHHHCCCHHHHHHHHH------------H-----hCCchhhhcCcCCCccCHHHHhcCCCCCCCcchH
Confidence 356555558887777666666 444321 1 2469999999999555599999987777888766
Q ss_pred cccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
|..++. .+.....++. +...++...++|+||||||+||++|..|+++|++|+|+|+.+.++
T Consensus 116 --~l~~~~---~~~~~~~~~~-~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 116 --RLERYI---TDWAMETGWV-LFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred --HHHHHH---HHHHHhcCCC-CCCCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 333321 1222212221 112234567899999999999999999999999999999987654
No 85
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.30 E-value=5.9e-12 Score=136.05 Aligned_cols=177 Identities=27% Similarity=0.381 Sum_probs=105.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHH---------------HHHHhhccccccccccCCccc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGAL---------------VVRRMLEMESNFCFGEGGAGT 285 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~---------------~~~~~l~~~~n~~~g~gG~~~ 285 (704)
||+|||||++|+++|+.|+++|++|+|+|++...++.+....+. +..........+.-..+....
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 69999999999999999999999999999995443322111000 000000000000000010111
Q ss_pred c-cCcchhhh-hccCchhHHHHHHHHHHcCCCceeecCCc------------------cccCCCChHHHHHHHHHHHHHC
Q 005273 286 W-SDGKLVTR-IGRNSNSVLAVMNTLVHFGAPANILVDGK------------------SHLGTDRLIPLLRNFRQHLQRL 345 (704)
Q Consensus 286 ~-sdg~l~~~-~~~~~~~~~~~l~~l~~~G~~~~~~~~g~------------------~~~g~~~~~~l~~~L~~~l~~~ 345 (704)
| ..+.+... ............+.+...+++...+...+ +..+.-....+++.|.+.+++.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 1 11111111 01111123445566667777544332110 1112234567999999999999
Q ss_pred CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCC
Q 005273 346 GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNI 409 (704)
Q Consensus 346 Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi 409 (704)
|++++++++|++|..+++++.||.+.++ .+.||.||+|+|.++.. ++...+.
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g---------~i~ad~vV~a~G~~s~~---l~~~~~~ 212 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDG---------EIRADRVVLAAGAWSPQ---LLPLLGL 212 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTE---------EEEECEEEE--GGGHHH---HHHTTTT
T ss_pred hhhccccccccchhhccccccccccccc---------ccccceeEeccccccee---eeecccc
Confidence 9999999999999999999999999876 49999999999999864 4445555
No 86
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.29 E-value=3.4e-11 Score=118.14 Aligned_cols=146 Identities=27% Similarity=0.371 Sum_probs=91.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.+||+|||+||+||+||+.|++.|++|.++|++..+|+. .|..+.+...+.-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg---------------------------~~~Gg~lf~~iVVq 69 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG---------------------------MWGGGMLFNKIVVQ 69 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT---------------------------TTS-CTT---EEEE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc---------------------------ccccccccchhhhh
Confidence 579999999999999999999999999999999877642 23222222221100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCC---C
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDS---K 374 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~---~ 374 (704)
......+.++|++.....++ .-......+...|...+.+.|++++..+.|+|+...+ ++|.||.++-. .
T Consensus 70 ----~~a~~iL~elgi~y~~~~~g---~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~ 142 (230)
T PF01946_consen 70 ----EEADEILDELGIPYEEYGDG---YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEM 142 (230)
T ss_dssp ----TTTHHHHHHHT---EE-SSE---EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHT
T ss_pred ----hhHHHHHHhCCceeEEeCCe---EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhH
Confidence 01223567788877644332 1233445677778888878999999999999999988 89999988521 0
Q ss_pred CCCCCceeEEecCeEEEcCCCChH
Q 005273 375 DNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 375 ~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+..-+...++|+.||-|||+-+.
T Consensus 143 ~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 143 AGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp T--T-B-EEEEESEEEE---SSSS
T ss_pred hhcCCCcceEEEeEEEeCCCCchH
Confidence 000113468999999999999763
No 87
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.28 E-value=4.5e-12 Score=146.47 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=87.5
Q ss_pred cCCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceee
Q 005273 109 LQFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINI 187 (704)
Q Consensus 109 ~~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i 187 (704)
.+||.....|++...|-++.++ |.+.+. . .++++.+|+|+|| ++||..|.|...+.+|+|
T Consensus 51 ~~CP~~~~i~~~~~~~~~g~~~~a~~~~~------------~-----~np~~~~~grvc~--~~ce~~C~r~~~~~~v~i 111 (564)
T PRK12771 51 AACPAGEDIRGWLALVRGGDYEYAWRRLT------------K-----DNPFPAVMGRVCY--HPCESGCNRGQVDDAVGI 111 (564)
T ss_pred cCCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCCcchHhhCcCC--chhHHhccCCCCCCCcCH
Confidence 4799887678888777676665 544421 1 2469999999998 699999999988889988
Q ss_pred ecccccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 188 IHDCKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 188 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
+..-. +. .|.....++. +........++|+|||+||+||++|+.|++.|++|+|+|+.+.+|
T Consensus 112 ~~l~r----~~-~~~~~~~~~~-~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 112 NAVER----FL-GDYAIANGWK-FPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred HHHHH----HH-HHHHHHcCCC-CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 75211 10 1122211221 111124457899999999999999999999999999999998765
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.27 E-value=5.5e-12 Score=148.11 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=79.7
Q ss_pred cCCCCCCCChhhHHHHHhcc--cccccccCCCeEEEEEEEeeccccccCCchhhhhh-ccccccccccccccccccCCce
Q 005273 109 LQFPVASMLPAEAFTVVRKS--FDARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFIS-RLEAKVGSVEHMLDKRASGDLI 185 (704)
Q Consensus 109 ~~ipv~~~~p~~a~~i~~~~--~DaR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~-~~~~~~~~~e~~~~~~~~~~~v 185 (704)
.+||...-+|++. .+.+++ .+|=..| . .+++++..|+ |+|+ +||.+|++. .++||
T Consensus 282 ~~CPa~~~Ip~~~-~~~~~g~~~~Al~ii-------------~----~~NP~p~~~G~RVCp---~CE~aC~r~-~dePV 339 (1028)
T PRK06567 282 QGCPLKQKISEMN-YVKAQGFNLSALAII-------------V----IDNPMVAATGHRICN---DCSKACIYQ-KQDPV 339 (1028)
T ss_pred cCCCCCCcchHHH-HHHHCCCHHHHHHHH-------------H----HhCCChHhhCCccCc---chHHHhcCC-CCCCe
Confidence 4799887778743 344444 2332221 1 1257999999 9998 599999998 78999
Q ss_pred eeecccccccchh---hhhh---hhccCCC--Ccc--CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 186 NIIHDCKKVSDDT---LLRK---EISSGSE--GLY--NYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 186 ~i~~~c~~~~~~~---~~~~---~~~~~~~--~~~--~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
+|+..-....... +... .+..++. ..+ .+++.++++|+|||+|||||+||+.|+++||+|+|+|+.+..
T Consensus 340 ~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 340 NIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKIT 418 (1028)
T ss_pred ehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccc
Confidence 9997322110000 0000 0000111 111 123356899999999999999999999999999999987543
No 89
>PLN02661 Putative thiazole synthesis
Probab=99.27 E-value=9.1e-11 Score=124.94 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhh
Q 005273 216 RTRKPKVAVVGGGPSGLFASLVLAEL-GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 216 ~~~~~~v~vvG~G~aGl~aA~~l~~~-g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~ 294 (704)
.....||+|||+|++|++||+.|++. |++|+|+|+...+|+.. |..+.+...
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~---------------------------~~gg~l~~~ 141 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA---------------------------WLGGQLFSA 141 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce---------------------------eeCcccccc
Confidence 34467999999999999999999986 89999999987765321 111111111
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEEEeCCEEEEEEEc--
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLLIENARIVGVKVS-- 371 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~~g~v~GV~~~-- 371 (704)
+.-.. ...+++.++|++++.. ++ +.-......+.+.|.+++.+ .|++++.++.|.+++.+++++.||.+.
T Consensus 142 ~vv~~----~a~e~LeElGV~fd~~-dg--y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~ 214 (357)
T PLN02661 142 MVVRK----PAHLFLDELGVPYDEQ-EN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWA 214 (357)
T ss_pred ccccc----HHHHHHHHcCCCcccC-CC--eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecc
Confidence 00000 1234677889887543 21 11122334566777776655 689999999999999999999999863
Q ss_pred ----CCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 372 ----DSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 372 ----~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
++.+....+...+.|++||+|||+.+.
T Consensus 215 ~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 215 LVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred hhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 221110112347899999999998763
No 90
>PRK13984 putative oxidoreductase; Provisional
Probab=99.22 E-value=1.6e-11 Score=143.22 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=80.8
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
.||.....|++...+.++.++ |-+.+.. .++++.+|+|+|| ++||.+|.++..++||.|+
T Consensus 196 ~CP~~~~i~~~~~~i~~~~~~~a~~~~~~-----------------~np~~~~~g~vC~--~~Ce~~C~~~~~~~~~~i~ 256 (604)
T PRK13984 196 TCPAHMDIPQYIKAIYKDDLEEGLRWLYK-----------------TNPLSMVCGRVCT--HKCETVCSIGHRGEPIAIR 256 (604)
T ss_pred cCCCCCCHHHHHHHHHcCCHHHHHHHHHh-----------------cCCccchhhCcCC--chHHHhhcccCCCCCeEeC
Confidence 355544447766666555455 3222111 1468999999998 7999999999888999988
Q ss_pred cccccccchhhhhhhhccCCCCc-cCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 189 HDCKKVSDDTLLRKEISSGSEGL-YNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 189 ~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..- +++ .|.......... ......+.++|+|||+|++|+++|..|+++|++|+|+|+.+.++
T Consensus 257 ~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 257 WLK----RYI-VDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred cHH----HHH-HhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 521 111 111100011000 11223457899999999999999999999999999999988764
No 91
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.21 E-value=2.2e-10 Score=131.77 Aligned_cols=183 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHH--hhccc---------cccccccCCcc-cc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRR--MLEME---------SNFCFGEGGAG-TW 286 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~--~l~~~---------~n~~~g~gG~~-~~ 286 (704)
.+||+|||||+.|+++|+.|+++|++|+|+|+++...+.+....+....+ .+... .+..+..-... ..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~ 85 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVE 85 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhc
Confidence 58999999999999999999999999999999875443222111110000 00000 00000000000 00
Q ss_pred cCcchhhhhc-cCchhHHHHHHHHHHcCCCceeecCC-----ccc------------cCCCChHHHHHHHHHHHHHCCCE
Q 005273 287 SDGKLVTRIG-RNSNSVLAVMNTLVHFGAPANILVDG-----KSH------------LGTDRLIPLLRNFRQHLQRLGVT 348 (704)
Q Consensus 287 sdg~l~~~~~-~~~~~~~~~l~~l~~~G~~~~~~~~g-----~~~------------~g~~~~~~l~~~L~~~l~~~Gv~ 348 (704)
..+.+..... ..........+.+...|++...+... .|. .+......++..+...+.++|++
T Consensus 86 ~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~ 165 (546)
T PRK11101 86 PTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQ 165 (546)
T ss_pred ccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCCCE
Confidence 0011111111 11112233445556677665443211 011 12334455777888888999999
Q ss_pred EEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 349 IKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 349 i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
++++++|+++..+++++++|++.+..++ +...+.|+.||+|+|.|+..+..++
T Consensus 166 i~~~t~V~~i~~~~~~v~gv~v~d~~~g---~~~~i~A~~VVnAaG~wa~~l~~~~ 218 (546)
T PRK11101 166 ILTYHEVTGLIREGDTVCGVRVRDHLTG---ETQEIHAPVVVNAAGIWGQHIAEYA 218 (546)
T ss_pred EEeccEEEEEEEcCCeEEEEEEEEcCCC---cEEEEECCEEEECCChhHHHHHHhc
Confidence 9999999999988889999988653211 1247999999999999998765544
No 92
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.19 E-value=3.7e-10 Score=123.99 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=98.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc--cccchhH---------H---HHHHhhccccccccccCCcc-
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ--RGRDIGA---------L---VVRRMLEMESNFCFGEGGAG- 284 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~--~~~~~~~---------~---~~~~~l~~~~n~~~g~gG~~- 284 (704)
+||+|||||++|+++|+.|+++|++|+|+|+...... .+..... . +.....+....+. ...+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~-~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLE-KEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHH-HHhCCee
Confidence 4899999999999999999999999999999765421 1110000 0 0000000000000 000000
Q ss_pred cccCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCc-----c--------------ccCCCChHHHHHHHHHHHHHC
Q 005273 285 TWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGK-----S--------------HLGTDRLIPLLRNFRQHLQRL 345 (704)
Q Consensus 285 ~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~-----~--------------~~g~~~~~~l~~~L~~~l~~~ 345 (704)
....+.+....... .......+.+...|.+...+.... | ..+.-....+.+.|.+.+++.
T Consensus 80 ~~~~G~l~~~~~~~-~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKEN-QFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH 158 (380)
T ss_pred EeecCeEEEcCCCc-HHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc
Confidence 11122222111111 233444555666676544332110 1 112223446788898889999
Q ss_pred CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 346 GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 346 Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
|++++++++|+++..+++.+ .|.+.++ ++.+|.||+|+|+|+..+..
T Consensus 159 g~~~~~~~~V~~i~~~~~~~-~v~~~~~---------~i~a~~vV~aaG~~~~~l~~ 205 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLV-TVKTTKG---------SYQANKLVVTAGAWTSKLLS 205 (380)
T ss_pred CCEEECCCeEEEEEecCCeE-EEEeCCC---------EEEeCEEEEecCcchHHHhh
Confidence 99999999999998776654 3555432 58999999999999865433
No 93
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.15 E-value=6.9e-10 Score=124.02 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=86.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHH---HHHhhccccccccccCCcccc-cCcchhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALV---VRRMLEMESNFCFGEGGAGTW-SDGKLVTR 294 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~---~~~~l~~~~n~~~g~gG~~~~-sdg~l~~~ 294 (704)
.+||+||||||||++||+.|+++|++|+|+||++.++.+...-+... ...+.. ++... .....+ ....+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~---~~~~~-~~~~~~~~~~~~--- 77 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP---GFADS-APVERLITHEKL--- 77 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh---hhhhc-CcccceeeeeeE---
Confidence 58999999999999999999999999999999987654321000000 000000 00000 000000 00000
Q ss_pred hccCchhHHHHHHHHHHcCC---CceeecCCccc-c-CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEE
Q 005273 295 IGRNSNSVLAVMNTLVHFGA---PANILVDGKSH-L-GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVK 369 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~---~~~~~~~g~~~-~-g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~ 369 (704)
.++...+. .+.......+. . ....-..+.+.|.+.+++.|++++++++|+++..+++++.++.
T Consensus 78 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~ 145 (428)
T PRK10157 78 ------------AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE 145 (428)
T ss_pred ------------EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE
Confidence 00000000 00000000000 0 0111234667888889899999999999999988888776665
Q ss_pred EcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 370 VSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 370 ~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.. + .++.|+.||+|+|.++.
T Consensus 146 ~~-g--------~~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 146 AD-G--------DVIEAKTVILADGVNSI 165 (428)
T ss_pred cC-C--------cEEECCEEEEEeCCCHH
Confidence 32 2 36899999999998763
No 94
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.11 E-value=1.2e-09 Score=121.06 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHH---HHHHhhccccc-cccccCCcccccCcchhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGAL---VVRRMLEMESN-FCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~---~~~~~l~~~~n-~~~g~gG~~~~sdg~l~~~ 294 (704)
.+||+||||||||++||+.|++.|++|+|+||+..+|.+....+.. ....+...... +.....+...+..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~------ 76 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFP------ 76 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEec------
Confidence 5899999999999999999999999999999999887643321111 11111100000 0000000000000
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCC
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSK 374 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~ 374 (704)
+....+.... +..-...-..+.++|.+++++.|++++.+++++++..+++.+..++..+.
T Consensus 77 ------------------~~~~~~~~~~-~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~- 136 (396)
T COG0644 77 ------------------GEKVAIEVPV-GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD- 136 (396)
T ss_pred ------------------CCceEEecCC-CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-
Confidence 0000000000 00001112347788999999999999999999999998876655555443
Q ss_pred CCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCc
Q 005273 375 DNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNIN 410 (704)
Q Consensus 375 ~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~ 410 (704)
.+++|+.||.|+|..+. +.+..+..
T Consensus 137 -------~e~~a~~vI~AdG~~s~----l~~~lg~~ 161 (396)
T COG0644 137 -------DEVRAKVVIDADGVNSA----LARKLGLK 161 (396)
T ss_pred -------EEEEcCEEEECCCcchH----HHHHhCCC
Confidence 47999999999998874 33444554
No 95
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.08 E-value=1.1e-09 Score=121.81 Aligned_cols=63 Identities=29% Similarity=0.481 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHH
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIY 401 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~ 401 (704)
....++..|.+.+++.|++|+++++|+++..+++++.+|++.++ ++.||.||+|+|.|+..+.
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~---------~~~a~~VV~a~G~~~~~l~ 261 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG---------VITADAYVVALGSYSTALL 261 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc---------EEeCCEEEECCCcchHHHH
Confidence 44568888999999999999999999999888887777776543 6899999999999987543
No 96
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.08 E-value=2.5e-09 Score=117.22 Aligned_cols=170 Identities=20% Similarity=0.253 Sum_probs=97.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc--ccc--------hh---HH--HHHHhhccccccccccCCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR--GRD--------IG---AL--VVRRMLEMESNFCFGEGGA 283 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~--~~~--------~~---~~--~~~~~l~~~~n~~~g~gG~ 283 (704)
.+||+|||||++|+++|+.|+++|++|+|+|++...+.. +.. .+ .. +..........+.. ..+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~-~~~~ 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELER-ESGE 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHH-HhCC
Confidence 479999999999999999999999999999998754211 100 00 00 00000000000000 0000
Q ss_pred ccc-cCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCc-----c--------------ccCCCChHHHHHHHHHHHH
Q 005273 284 GTW-SDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGK-----S--------------HLGTDRLIPLLRNFRQHLQ 343 (704)
Q Consensus 284 ~~~-sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~-----~--------------~~g~~~~~~l~~~L~~~l~ 343 (704)
..+ ..+.+... ...........+.+.++|++...+.... | ..+.-....++..+.+.+.
T Consensus 82 ~~~~~~G~l~~~-~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~ 160 (376)
T PRK11259 82 PLFVRTGVLNLG-PADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR 160 (376)
T ss_pred ccEEEECCEEEc-CCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH
Confidence 001 11111110 0111123344455666776654322110 1 1122233457778888888
Q ss_pred HCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHH
Q 005273 344 RLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDI 400 (704)
Q Consensus 344 ~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~ 400 (704)
+.|++++++++|+++..+++.+ .|.+.++ .+.+|.||+|+|.|+..+
T Consensus 161 ~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g---------~~~a~~vV~A~G~~~~~l 207 (376)
T PRK11259 161 EAGAELLFNEPVTAIEADGDGV-TVTTADG---------TYEAKKLVVSAGAWVKDL 207 (376)
T ss_pred HCCCEEECCCEEEEEEeeCCeE-EEEeCCC---------EEEeeEEEEecCcchhhh
Confidence 8999999999999998876643 4555443 589999999999998653
No 97
>PRK10015 oxidoreductase; Provisional
Probab=99.08 E-value=1.7e-09 Score=120.77 Aligned_cols=155 Identities=25% Similarity=0.293 Sum_probs=86.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHH----HHHhhccccccccccCCcccccCcchhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALV----VRRMLEMESNFCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~----~~~~l~~~~n~~~g~gG~~~~sdg~l~~~ 294 (704)
.+||+||||||||++||+.|++.|++|+|+||++.++.+... ++.. ...+.. .+.. ............+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~-gg~i~~~~~~~l~~---~~~~-~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT-GGRLYAHTLEAIIP---GFAA-SAPVERKVTREKISF 79 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccccc-CceeecccHHHHcc---cccc-cCCccccccceeEEE
Confidence 589999999999999999999999999999999876543210 1000 000000 0000 000000000000000
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCcccc-C-CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcC
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHL-G-TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSD 372 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~-g-~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~ 372 (704)
...... ..+++.....+.+.. + ...-..+-+.|.+++++.|++++.+++|+++..+++++.++...+
T Consensus 80 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~ 148 (429)
T PRK10015 80 LTEESA-----------VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD 148 (429)
T ss_pred EeCCCc-----------eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCC
Confidence 000000 000000000000000 0 111123556788888899999999999999988878887776532
Q ss_pred CCCCCCCceeEEecCeEEEcCCCChH
Q 005273 373 SKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 373 ~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.|+.||+|+|..+.
T Consensus 149 ---------~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 149 ---------DILEANVVILADGVNSM 165 (429)
T ss_pred ---------eEEECCEEEEccCcchh
Confidence 36999999999998763
No 98
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.07 E-value=8.3e-11 Score=131.36 Aligned_cols=147 Identities=27% Similarity=0.330 Sum_probs=34.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCch
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSN 300 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~ 300 (704)
||||||||++|+.||+.+|+.|.+|+|+|+...+|+.... ++...+........ ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~--------------------~~~~~~~~~~~~~~--~~~g 58 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS--------------------GGVSPFDGNHDEDQ--VIGG 58 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG--------------------SSS-EETTEEHHHH--HHHH
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE--------------------CCcCChhhcchhhc--cCCC
Confidence 7999999999999999999999999999999988753211 11111111000000 0000
Q ss_pred hHHHHHHHHHHcCCC-ceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCC
Q 005273 301 SVLAVMNTLVHFGAP-ANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQS 379 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~-~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~ 379 (704)
...++.+.+...+.. .. ...+......-....+...|.+.+++.|+++++++.|.++..+++++++|.+.+..+.
T Consensus 59 i~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~--- 134 (428)
T PF12831_consen 59 IFREFLNRLRARGGYPQE-DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGR--- 134 (428)
T ss_dssp HHHHHHHST-----------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhcccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 111222222111110 00 0000000000111123445666667789999999999999999999999999875432
Q ss_pred ceeEEecCeEEEcCCC
Q 005273 380 DIQKLGFDAVILAVGH 395 (704)
Q Consensus 380 ~~~~i~Ad~VVlAtG~ 395 (704)
.++.|+.||.|||-
T Consensus 135 --~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 135 --KEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------
T ss_pred --cccccccccccccc
Confidence 68999999999994
No 99
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.07 E-value=2.1e-09 Score=118.95 Aligned_cols=172 Identities=20% Similarity=0.290 Sum_probs=98.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCcccccc--ccchh-----------HHHH---HHhhccccccccccC
Q 005273 220 PKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQR--GRDIG-----------ALVV---RRMLEMESNFCFGEG 281 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~--~~~~~-----------~~~~---~~~l~~~~n~~~g~g 281 (704)
+||+|||||++|+++|+.|+++ |++|+|+||+..++.. +...+ .... .........+. .+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 81 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFC-DQH 81 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHH-HHc
Confidence 6999999999999999999999 9999999998654321 11100 0000 00000000000 000
Q ss_pred CcccccCcchhhhhc-cCchhHHHHHHHHHHcCCCceeecCC-----c-----------cccCCCChHHHHHHHHHHHHH
Q 005273 282 GAGTWSDGKLVTRIG-RNSNSVLAVMNTLVHFGAPANILVDG-----K-----------SHLGTDRLIPLLRNFRQHLQR 344 (704)
Q Consensus 282 G~~~~sdg~l~~~~~-~~~~~~~~~l~~l~~~G~~~~~~~~g-----~-----------~~~g~~~~~~l~~~L~~~l~~ 344 (704)
+......+.+..... ..........+.....|++...+... . +..+......+.+.|.+.+++
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 000001122211110 01112233344555666654332211 0 111233456788999999999
Q ss_pred CCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 345 LGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 345 ~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
.|++++++++|.++..+++.+ .|.+.++ .+.||.||+|+|.|+..+..
T Consensus 162 ~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g---------~i~ad~vV~A~G~~s~~l~~ 209 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHANGV-VVRTTQG---------EYEARTLINCAGLMSDRLAK 209 (393)
T ss_pred CCCEEEcCCEEEEEEecCCeE-EEEECCC---------EEEeCEEEECCCcchHHHHH
Confidence 999999999999998766654 4555432 58999999999999865433
No 100
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.05 E-value=4.3e-09 Score=110.87 Aligned_cols=147 Identities=23% Similarity=0.251 Sum_probs=84.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc--hhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD--IGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~--~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
+||+||||||+|+++|+.|++.|.+|+|+|+....+..... +..... ..+... +......+....+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~~~---- 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVL-EELDLP-----LELIVNLVRGARFFS---- 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHH-HHhcCC-----chhhhhheeeEEEEc----
Confidence 58999999999999999999999999999999765431110 000000 000000 000000000000000
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
..+-....... .+.........+.+.|.+.+++.|++++++++|+++..+++.+. +.+.++
T Consensus 71 -------------~~~~~~~~~~~-~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~---- 131 (295)
T TIGR02032 71 -------------PNGDSVEIPIE-TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGG---- 131 (295)
T ss_pred -------------CCCcEEEeccC-CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCc----
Confidence 00000000000 00001112234778888899899999999999999988777543 333332
Q ss_pred CCceeEEecCeEEEcCCCChH
Q 005273 378 QSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+++||.||+|+|.++.
T Consensus 132 ---~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 132 ---EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred ---cEEEEeCEEEECCCcchH
Confidence 147999999999999874
No 101
>PRK06185 hypothetical protein; Provisional
Probab=99.02 E-value=5.6e-09 Score=115.88 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=88.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc--cccchhHHHHHHhhcc-ccccccccCC------cccccC
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ--RGRDIGALVVRRMLEM-ESNFCFGEGG------AGTWSD 288 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~--~~~~~~~~~~~~~l~~-~~n~~~g~gG------~~~~sd 288 (704)
..+||+|||||++|+++|+.|++.|++|+|+|+.+.... ++..+.... ..+++. +-.-.+...+ ...|.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s-~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPST-LELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhH-HHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 357999999999999999999999999999999864321 111110000 001100 0000000000 000000
Q ss_pred cchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEE
Q 005273 289 GKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVG 367 (704)
Q Consensus 289 g~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~G 367 (704)
+..... ++ +.... ...++........+.+.|.+.+.+. |++++++++|+++..+++++.+
T Consensus 84 ~~~~~~-----------~~-~~~~~-------~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~ 144 (407)
T PRK06185 84 GRTVTL-----------AD-FSRLP-------TPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTG 144 (407)
T ss_pred CeEEEe-----------cc-hhhcC-------CCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEE
Confidence 000000 00 00000 0001111112234677888888765 8999999999999988888888
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
|.+...++ ..+++||.||.|+|.++.
T Consensus 145 v~~~~~~g-----~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 145 VRARTPDG-----PGEIRADLVVGADGRHSR 170 (407)
T ss_pred EEEEcCCC-----cEEEEeCEEEECCCCchH
Confidence 87764322 146999999999999984
No 102
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.02 E-value=1.4e-09 Score=117.52 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.+.+.|.+.+++.|++++++++++++..+++.+..+......+ +..+++||.||.|+|.+|..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g----~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDG----EEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTC----EEEEEEESEEEE-SGTT-HH
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCC----ceeEEEEeeeecccCcccch
Confidence 4778899999999999999999999998888766554433222 23579999999999999853
No 103
>PRK06184 hypothetical protein; Provisional
Probab=99.01 E-value=4.5e-09 Score=120.06 Aligned_cols=166 Identities=18% Similarity=0.243 Sum_probs=89.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccccc--chhHHHHHHhhcc-c--cccc-cc--cCCcccccC-c
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR--DIGALVVRRMLEM-E--SNFC-FG--EGGAGTWSD-G 289 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~--~~~~~~~~~~l~~-~--~n~~-~g--~gG~~~~sd-g 289 (704)
.++|+||||||+||++|+.|++.|++|+|+||.+.+....+ .+..... .+++. + ..+. .+ ......|.. +
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQ-EVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHH-HHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 47899999999999999999999999999999876532211 1111000 01100 0 0000 00 000001110 0
Q ss_pred chhhhhccCchhHHHHHHHHHHcCCCceeecCCccccC--CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEE
Q 005273 290 KLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLG--TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVG 367 (704)
Q Consensus 290 ~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g--~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~G 367 (704)
.+. .. ...... . .....++.. .-.-..+.+.|.+.+.+.|++++++++|+++..+++.+.
T Consensus 82 ~~~-~~-----------~~~~~~----~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~- 143 (502)
T PRK06184 82 SVA-ES-----------DMFAHL----E-PTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT- 143 (502)
T ss_pred eEE-Ee-----------eccccc----c-CCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-
Confidence 000 00 000000 0 000001110 011123557788888888999999999999987776554
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV 412 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~ 412 (704)
+.+.+..+ ..+++||.||.|+|.+|. ..+..++++.
T Consensus 144 v~~~~~~~-----~~~i~a~~vVgADG~~S~----vR~~lgi~~~ 179 (502)
T PRK06184 144 ARVAGPAG-----EETVRARYLVGADGGRSF----VRKALGIGFP 179 (502)
T ss_pred EEEEeCCC-----eEEEEeCEEEECCCCchH----HHHhCCCCcc
Confidence 33322111 257999999999999985 3344566554
No 104
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.00 E-value=2.8e-09 Score=120.29 Aligned_cols=174 Identities=24% Similarity=0.339 Sum_probs=98.3
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccc-cccchhHH---------HHH--------Hh-----
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQ-RGRDIGAL---------VVR--------RM----- 269 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~-~~~~~~~~---------~~~--------~~----- 269 (704)
+.....||+|||||++|+++|+.|+++ |.+|+|+|++....+ +++..+.. +.. .+
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 99 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASE 99 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHH
Confidence 344567999999999999999999998 899999999865322 22221100 000 00
Q ss_pred --hccccccccccCCccccc-Ccchhhhh-ccCchhHHHHHHHHHHcCCCc-eeecCC---------c-------cccCC
Q 005273 270 --LEMESNFCFGEGGAGTWS-DGKLVTRI-GRNSNSVLAVMNTLVHFGAPA-NILVDG---------K-------SHLGT 328 (704)
Q Consensus 270 --l~~~~n~~~g~gG~~~~s-dg~l~~~~-~~~~~~~~~~l~~l~~~G~~~-~~~~~g---------~-------~~~g~ 328 (704)
+..-..+.-..+....|. .+.+.... ...........+.+.+.|++. ..+... . +..+.
T Consensus 100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~ 179 (460)
T TIGR03329 100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAAS 179 (460)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeE
Confidence 000000000000001111 22221111 111122334445556667642 222110 0 11133
Q ss_pred CChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 329 DRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 329 ~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
-....++..|.+.+++.|++|+++++|+++.. + ..+.|++.++ .+.||.||+|+|+|+..
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~~~v~t~~g---------~v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G-QPAVVRTPDG---------QVTADKVVLALNAWMAS 239 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C-CceEEEeCCc---------EEECCEEEEcccccccc
Confidence 34556889999999999999999999999864 3 3344655443 58999999999999764
No 105
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.00 E-value=6.2e-09 Score=115.74 Aligned_cols=69 Identities=22% Similarity=0.445 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
....++..|.+.+++.|++++++++|+++..+++.+. +.+.+..+. ...++.||.||+|+|.|+..+..
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~---~~~~i~a~~vV~a~G~~s~~l~~ 263 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVV-LTVQPSAEH---PSRTLEFDGVVVCAGVGSRALAA 263 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCC---ccceEecCEEEECCCcChHHHHH
Confidence 4456788899999999999999999999987766553 444332110 01268999999999999875543
No 106
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.99 E-value=1.6e-10 Score=126.57 Aligned_cols=126 Identities=20% Similarity=0.190 Sum_probs=97.0
Q ss_pred CCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHH
Q 005273 49 QRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTV 124 (704)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i 124 (704)
+..+.|...+.++.+++++|++++|.|++.......|....+ .|++.++++.||+.+++||.. +. |+.++++
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~----~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 323 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQK----KGMYLPYCKALKEVVDVPVIMAGRMEDPELASEA 323 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCC----cchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 456678889999999999999999999754322233433333 578888999999999999963 54 9999999
Q ss_pred Hhcc-cc----cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeeeccccccc
Q 005273 125 VRKS-FD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINIIHDCKKVS 195 (704)
Q Consensus 125 ~~~~-~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~~~c~~~~ 195 (704)
++++ +| +|+.|+||+|+.|+..+..++ +++|++|+..|.+.. ..+.++ .|.+||
T Consensus 324 l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~------i~~Ci~Cn~~C~~~~-------~~~~~~----~C~~Np 382 (382)
T cd02931 324 INEGIADMISLGRPLLADPDVVNKIRRGRFKN------IRPCISCHDGCLGRM-------ALGGNL----SCAVNP 382 (382)
T ss_pred HHcCCCCeeeechHhHhCccHHHHHHcCCccc------CcCChhhHHHHhhHh-------cCCCCc----eecCCC
Confidence 9876 89 999999999999999998653 789999986564421 123344 399885
No 107
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.99 E-value=1.5e-08 Score=112.53 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=99.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEEeCccccccccchhHHH------------HHHhhccccccccccCC
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAEL-GA-DVTLIERGQAVEQRGRDIGALV------------VRRMLEMESNFCFGEGG 282 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~-g~-~v~l~e~~~~~~~~~~~~~~~~------------~~~~l~~~~n~~~g~gG 282 (704)
...+||+|||||++|+++|+.|+++ |. +|+|+|+.....+.+....+.. .........++.-..+.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~ 107 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNY 107 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCC
Confidence 3468999999999999999999995 95 8999999864432211110000 00000000000000000
Q ss_pred cccc-cCcchhhhhc-cCchhHHHHHHHHHHcCCCceeecCCc-----c-------------------ccCCCChHHHHH
Q 005273 283 AGTW-SDGKLVTRIG-RNSNSVLAVMNTLVHFGAPANILVDGK-----S-------------------HLGTDRLIPLLR 336 (704)
Q Consensus 283 ~~~~-sdg~l~~~~~-~~~~~~~~~l~~l~~~G~~~~~~~~g~-----~-------------------~~g~~~~~~l~~ 336 (704)
...| ..+.+..... ..........+.+...|++...+...+ | ..+......+..
T Consensus 108 ~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~ 187 (407)
T TIGR01373 108 NVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAW 187 (407)
T ss_pred CcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHH
Confidence 0011 1122211110 011112233344455666654432110 1 112223345667
Q ss_pred HHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHH
Q 005273 337 NFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIY 401 (704)
Q Consensus 337 ~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~ 401 (704)
.|.+.+.+.|++++++++|+++... ++++.+|++.++ .+.++.||+|+|+|+..+.
T Consensus 188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g---------~i~a~~vVvaagg~~~~l~ 244 (407)
T TIGR01373 188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG---------FIGAKKVGVAVAGHSSVVA 244 (407)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc---------eEECCEEEECCChhhHHHH
Confidence 7888999999999999999999764 567777877654 5899999999999986543
No 108
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.97 E-value=3.5e-09 Score=117.84 Aligned_cols=157 Identities=23% Similarity=0.268 Sum_probs=84.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc--cc--chhHHHHHHhhcc-c--cccccccCCcccccCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR--GR--DIGALVVRRMLEM-E--SNFCFGEGGAGTWSDGK 290 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~--~~--~~~~~~~~~~l~~-~--~n~~~g~gG~~~~sdg~ 290 (704)
..+||+||||||+|+.+|+.|++.|++|+|+|+.+..... +. .+..... ..+.. + ..+. ..+ ..+..-.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~-~~L~~lGl~~~l~--~~~-~~~~~~~ 92 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSA-RIFEGIGVWEKIL--PQI-GKFRQIR 92 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHH-HHHHHCChhhhhH--hhc-CCccEEE
Confidence 3589999999999999999999999999999998764311 11 1111000 01100 0 0000 000 0000000
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCCccccC-CCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLG-TDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGV 368 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g-~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV 368 (704)
+. +.... . ...+.. . .... ...+ ......+.+.|.+.+.+. +++++++++|+++..+++.+ .|
T Consensus 93 ~~----~~~~~--~----~~~~~~--~-~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~-~v 157 (415)
T PRK07364 93 LS----DADYP--G----VVKFQP--T-DLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA-TV 157 (415)
T ss_pred EE----eCCCC--c----eeeecc--c-cCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee-EE
Confidence 00 00000 0 000000 0 0000 0001 011134677788888775 79999999999998766654 36
Q ss_pred EEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 369 KVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 369 ~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.++ ..+++||.||.|+|.+|.
T Consensus 158 ~~~~~~~-----~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 158 TLEIEGK-----QQTLQSKLVVAADGARSP 182 (415)
T ss_pred EEccCCc-----ceEEeeeEEEEeCCCCch
Confidence 6654322 246999999999999885
No 109
>PRK08244 hypothetical protein; Provisional
Probab=98.97 E-value=7.2e-09 Score=118.08 Aligned_cols=156 Identities=22% Similarity=0.220 Sum_probs=84.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccccc--chhHHHHHHhhcc-ccccccccCCcccccCcchhhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR--DIGALVVRRMLEM-ESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~--~~~~~~~~~~l~~-~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
.+||+||||||+||++|+.|++.|++|+|+||.+.....++ .+..... .+++. +---.+...+ ..+....+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~-e~l~~lGl~~~l~~~~-~~~~~~~~~~-- 77 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTL-EILDMRGLLERFLEKG-RKLPSGHFAG-- 77 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHH-HHHHhcCcHHHHHhhc-ccccceEEec--
Confidence 36899999999999999999999999999999875432111 1111000 01100 0000000000 0000000000
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
. ....++.......++...-.-..+.+.|.+.+++.|++++++++|+++..+++.+. +.+.+.++
T Consensus 78 --~------------~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g 142 (493)
T PRK08244 78 --L------------DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDG 142 (493)
T ss_pred --c------------cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCc
Confidence 0 00000000000011100011123566777788888999999999999987777653 44443222
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+++||.||.|+|.+|.
T Consensus 143 -----~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 143 -----LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred -----cEEEEeCEEEECCCCChH
Confidence 147999999999999984
No 110
>PRK06847 hypothetical protein; Provisional
Probab=98.97 E-value=6.6e-09 Score=113.95 Aligned_cols=153 Identities=27% Similarity=0.367 Sum_probs=85.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch--hHHHHHHhhcccc--cc---ccccCCcccc-cCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI--GALVVRRMLEMES--NF---CFGEGGAGTW-SDGK 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~--~~~~~~~~l~~~~--n~---~~g~gG~~~~-sdg~ 290 (704)
.++|+||||||+|+++|+.|++.|++|+|+|+.+.....+..+ .......+-..+. .+ .........+ .++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 5789999999999999999999999999999987643222111 0000000000000 00 0000000000 0010
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeec-CCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILV-DGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVK 369 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~-~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~ 369 (704)
....+ +..... ...+....-.-..+.+.|.+.+.+.|++++++++|+++..+++.+ .|.
T Consensus 84 ~~~~~-------------------~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~-~v~ 143 (375)
T PRK06847 84 LLAEL-------------------PTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGV-TVT 143 (375)
T ss_pred EEEec-------------------CcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEE-EEE
Confidence 00000 000000 000101111123577888888888899999999999998766653 455
Q ss_pred EcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 370 VSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 370 ~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+.++ .++.+|.||+|+|.++..
T Consensus 144 ~~~g--------~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 144 FSDG--------TTGRYDLVVGADGLYSKV 165 (375)
T ss_pred EcCC--------CEEEcCEEEECcCCCcch
Confidence 5544 368999999999998854
No 111
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.96 E-value=4.8e-09 Score=116.64 Aligned_cols=149 Identities=26% Similarity=0.345 Sum_probs=110.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..+++++|||||+.|++.|..+++.|.+|||+|+.+.+...
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------------------------------------- 211 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------------------------------------- 211 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc---------------------------------------
Confidence 45789999999999999999999999999999999865210
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
.-.++.+.+.+.+++.|++++++++++.+...++. ..+.++++.+
T Consensus 212 ---------------------------------~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~- 256 (454)
T COG1249 212 ---------------------------------EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEG- 256 (454)
T ss_pred ---------------------------------CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCC-
Confidence 01247788888998888999999999999877665 5577766633
Q ss_pred CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc---------------ccceeeEEEEecchhhhcccccccchhhh
Q 005273 377 SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV---------------PKDFAVGLRMEHPQELINSIQYSELATEV 441 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~---------------~~~~avG~~~~~p~~~~~~~~~~~l~~e~ 441 (704)
.++.+|.|++|+|..++.-..-|++.|+.+. |..|++|+.+..|+........+..+.+.
T Consensus 257 -----~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~ 331 (454)
T COG1249 257 -----GTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAEN 331 (454)
T ss_pred -----CEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHH
Confidence 2688999999999988642223444454442 45788998887776444444445555555
Q ss_pred ccc
Q 005273 442 QKG 444 (704)
Q Consensus 442 ~~g 444 (704)
+.|
T Consensus 332 i~g 334 (454)
T COG1249 332 IAG 334 (454)
T ss_pred HhC
Confidence 544
No 112
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=111.10 Aligned_cols=179 Identities=21% Similarity=0.207 Sum_probs=110.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccccchhHHHHHHhhcccccccccc----------------
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGE---------------- 280 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~---------------- 280 (704)
.+||+|||||+.|+++|+.|++.+ ++|+|+||.+.++.-+...... ..+...+...+.
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSg----viHag~~y~p~slka~l~~~g~~~~~~~ 78 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSG----VIHAGLYYTPGSLKAKLCVAGNINEFAI 78 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCccc----ceeccccCCCcchhhHHHHHHHHHHHHH
Confidence 579999999999999999999998 9999999998876432211100 001000000000
Q ss_pred ---CCcccccCcchhhhhcc-CchhHHHHHHHHHHcCCC-ceeecCC-----cc-------------ccCCCChHHHHHH
Q 005273 281 ---GGAGTWSDGKLVTRIGR-NSNSVLAVMNTLVHFGAP-ANILVDG-----KS-------------HLGTDRLIPLLRN 337 (704)
Q Consensus 281 ---gG~~~~sdg~l~~~~~~-~~~~~~~~l~~l~~~G~~-~~~~~~g-----~~-------------~~g~~~~~~l~~~ 337 (704)
-+...-..++++....+ +...+....+.+...|++ ...+... .| ..+......+...
T Consensus 79 ~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 79 CKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 00000011333322221 223345556667777777 2221110 11 1223344568899
Q ss_pred HHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc
Q 005273 338 FRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL 411 (704)
Q Consensus 338 L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l 411 (704)
|.+.+.++|+++++|++|++|..+++.++-+.+.+++ .. ++|+.||.|+|..+..+ ++..|++.
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad~l---a~~~g~~~ 222 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE------ET-LEAKFVINAAGLYADPL---AQMAGIPE 222 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCc------EE-EEeeEEEECCchhHHHH---HHHhCCCc
Confidence 9999999999999999999999887766666666552 12 99999999999998644 44445544
No 113
>PRK06834 hypothetical protein; Provisional
Probab=98.96 E-value=1.2e-08 Score=115.84 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc---ccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE---QRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~---~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... .+...+..... .+++. -| .| ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~-~~L~~--------lG--l~------~~l 65 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTL-EVLDQ--------RG--IA------DRF 65 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHH-HHHHH--------cC--cH------HHH
Confidence 4799999999999999999999999999999987532 11111111000 00100 00 00 000
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
........ .. .+....+.........++...-.-..+.+.|.+.+++.|++++++++|+++..+++.+. |++.++
T Consensus 66 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~~~~g-- 140 (488)
T PRK06834 66 LAQGQVAQ-VT-GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VELSDG-- 140 (488)
T ss_pred HhcCCccc-cc-eeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EEECCC--
Confidence 00000000 00 00000000000000011111111234667788888889999999999999988776543 444433
Q ss_pred CCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccccc
Q 005273 376 NSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPK 414 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~~ 414 (704)
.++.+|.||.|+|.+|. ..+..|+.....
T Consensus 141 ------~~i~a~~vVgADG~~S~----vR~~lgi~~~g~ 169 (488)
T PRK06834 141 ------RTLRAQYLVGCDGGRSL----VRKAAGIDFPGW 169 (488)
T ss_pred ------CEEEeCEEEEecCCCCC----cHhhcCCCCCCC
Confidence 36899999999999984 223456655433
No 114
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.96 E-value=5.6e-09 Score=104.15 Aligned_cols=136 Identities=25% Similarity=0.293 Sum_probs=74.6
Q ss_pred EEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCccccc-CcchhhhhccCch
Q 005273 223 AVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWS-DGKLVTRIGRNSN 300 (704)
Q Consensus 223 ~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~s-dg~l~~~~~~~~~ 300 (704)
+||||||+||.+|..|.+.|.+ |+|||+++.+|+. |.... ...++. ... .+. +..+. .+.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~-------w~~~~--~~~~~~-~~~---~~~~~~~~~-~~~~--~ 64 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV-------WRRYY--SYTRLH-SPS---FFSSDFGLP-DFES--F 64 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH-------HHCH---TTTT-B-SSS---CCTGGSS---CCCH--S
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe-------eEEeC--CCCccc-cCc---cccccccCC-cccc--c
Confidence 6999999999999999999999 9999999887643 21100 000000 000 000 00000 0000 0
Q ss_pred hHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCc
Q 005273 301 SVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSD 380 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~ 380 (704)
.......+-.. ........+.++|.+.+++.+++++++++|+++..++++ +.|++.++
T Consensus 65 ~~~~~~~~~~~--------------~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~------- 122 (203)
T PF13738_consen 65 SFDDSPEWRWP--------------HDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDG------- 122 (203)
T ss_dssp CHHHHHHHHHS--------------BSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-------
T ss_pred ccccCCCCCCC--------------cccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEec-------
Confidence 00000000000 011223457888999999999999999999999998877 56777765
Q ss_pred eeEEecCeEEEcCCCCh
Q 005273 381 IQKLGFDAVILAVGHSA 397 (704)
Q Consensus 381 ~~~i~Ad~VVlAtG~~s 397 (704)
.++.|+.||+|||.++
T Consensus 123 -~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 123 -RTIRADRVVLATGHYS 138 (203)
T ss_dssp --EEEEEEEEE---SSC
T ss_pred -ceeeeeeEEEeeeccC
Confidence 4788999999999854
No 115
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.95 E-value=7.6e-09 Score=116.26 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..++|+|||||++||.||..|.+.|++|+|||+++.+|+.-...... .......... ..+....+...+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~-------~~d~~~~~~~--~~~~~s~~Y~~L~t 79 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKS-------ESDPLSLDPT--RSIVHSSVYESLRT 79 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCc-------CCCccccCCC--Ccccchhhhhhhhc
Confidence 35899999999999999999999999999999999887532100000 0000000000 00000000000000
Q ss_pred CchhHHHHHHHHHHcCCCceee---cCCccccCCCChHHHHHHHHHHHHHCCCE--EEeCeEEEEEEEeCCEEEEEEEcC
Q 005273 298 NSNSVLAVMNTLVHFGAPANIL---VDGKSHLGTDRLIPLLRNFRQHLQRLGVT--IKFGTRVDDLLIENARIVGVKVSD 372 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~---~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~--i~~~t~V~~i~~~~g~v~GV~~~~ 372 (704)
+.. .+.+ .+..+-.+.... .....++ ....+.++|.+.++..|+. |+++++|+++...++++ -|.+.+
T Consensus 80 n~p--~~~m-~f~dfp~~~~~~~~~~~~~~fp---~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w-~V~~~~ 152 (461)
T PLN02172 80 NLP--RECM-GYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKW-RVQSKN 152 (461)
T ss_pred cCC--Hhhc-cCCCCCCCcccccccCcCCCCC---CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeE-EEEEEc
Confidence 000 0000 000111100000 0011122 2346889999999999987 99999999998766543 455544
Q ss_pred CCCCCCCceeEEecCeEEEcCCCCh
Q 005273 373 SKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 373 ~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+ ...+..+|+||+|+|+++
T Consensus 153 ~~~----~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 153 SGG----FSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred CCC----ceEEEEcCEEEEeccCCC
Confidence 321 123567899999999764
No 116
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.95 E-value=6.9e-09 Score=114.52 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEc-CCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVS-DSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~-~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+.+.+ ++++++++|+.+..+++.+. +++. ++ .++.||.||.|+|.+|.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG--------~~~~a~llVgADG~~S~ 163 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDG--------ETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCC--------cEEecCEEEECCCCchH
Confidence 358889999998886 99999999999999888877 7777 44 37999999999999884
No 117
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.94 E-value=4.9e-09 Score=122.19 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe--CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE--NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~--~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
....+...|.+.+++.|++++.+++|+++..+ ++++++|.+.+..++ +...+.||.||+|+|.|+..+..++
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg---~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTG---KEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCC---cEEEEEeCEEEECCCHhHHHHHHhc
Confidence 44568888999999999999999999999876 478889887543211 1236899999999999998766554
No 118
>PRK06126 hypothetical protein; Provisional
Probab=98.94 E-value=1.4e-08 Score=117.26 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc
Q 005273 334 LLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV 412 (704)
Q Consensus 334 l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~ 412 (704)
+.+.|.+.+++. +++++++++|+++..+++.+. +.+.+..+ ++..++.+|.||.|+|.+|.. .+..+++..
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~---g~~~~i~ad~vVgADG~~S~V----R~~lgi~~~ 199 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDG---GESLTIRADYLVGCDGARSAV----RRSLGISYE 199 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCC---CcEEEEEEEEEEecCCcchHH----HHhcCCccc
Confidence 556777777765 899999999999988777665 44443211 123579999999999999852 234455543
No 119
>PRK07190 hypothetical protein; Provisional
Probab=98.93 E-value=1.7e-08 Score=114.57 Aligned_cols=163 Identities=19% Similarity=0.327 Sum_probs=90.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc--hhHHHHHHhhcc-c--cccc-cc--cCCcccccCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD--IGALVVRRMLEM-E--SNFC-FG--EGGAGTWSDGK 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~--~~~~~~~~~l~~-~--~n~~-~g--~gG~~~~sdg~ 290 (704)
.+||+||||||+||++|+.|++.|.+|+|+||.+.+...++. +..... .+++. + ..+. .+ ......|.++.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tl-e~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTL-QLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHH-HHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 479999999999999999999999999999999765332221 111000 00000 0 0000 00 00001222222
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCCccc-cCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSH-LGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVK 369 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~-~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~ 369 (704)
++..... ++... .....++ .... -..+.+.|.+.+++.|++++++++|+++..+++.+. +.
T Consensus 84 ~i~~~~~----------~~~~~------~~~~~~~~~~~~-q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~ 145 (487)
T PRK07190 84 FISRQSS----------WWEEL------EGCLHKHFLMLG-QSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TT 145 (487)
T ss_pred eEeeccc----------cCccC------CcCCCCceEecC-HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EE
Confidence 1100000 00000 0000000 0111 123556777888889999999999999988777554 33
Q ss_pred EcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc
Q 005273 370 VSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV 412 (704)
Q Consensus 370 ~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~ 412 (704)
+.++ .+++|+.||.|+|..+. ..+..|++..
T Consensus 146 ~~~g--------~~v~a~~vVgADG~~S~----vR~~lgi~f~ 176 (487)
T PRK07190 146 LSNG--------ERIQSRYVIGADGSRSF----VRNHFNVPFE 176 (487)
T ss_pred ECCC--------cEEEeCEEEECCCCCHH----HHHHcCCCcc
Confidence 3332 37999999999999874 3344566654
No 120
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.93 E-value=3.3e-09 Score=115.97 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHH
Q 005273 330 RLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDI 400 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~ 400 (704)
....++..|.+.+.+. |++++++++|++|.. + .|.+.++ .+.||.||+|+|.|+..+
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g---------~i~a~~VV~A~G~~s~~l 200 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRG---------DVHADQVFVCPGADFETL 200 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCC---------cEEeCEEEECCCCChhhh
Confidence 4456788888888775 999999999999853 2 4555443 478999999999998654
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.91 E-value=1.5e-08 Score=111.56 Aligned_cols=177 Identities=27% Similarity=0.296 Sum_probs=96.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccc---cccccCCcc----------
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESN---FCFGEGGAG---------- 284 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n---~~~g~gG~~---------- 284 (704)
..+||+|||||++|+++|+.|+++|.+|+++|+.....+.+....+...........+ .........
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999999999998865432211111111000000000 000000000
Q ss_pred ---cc-cCcchhhhhccC---chhHHHHHHHHHHcCCCceeec-----------------CC--ccccCCCChHHHHHHH
Q 005273 285 ---TW-SDGKLVTRIGRN---SNSVLAVMNTLVHFGAPANILV-----------------DG--KSHLGTDRLIPLLRNF 338 (704)
Q Consensus 285 ---~~-sdg~l~~~~~~~---~~~~~~~l~~l~~~G~~~~~~~-----------------~g--~~~~g~~~~~~l~~~L 338 (704)
.| ..+.+....... ........+.+........... .+ .+..+.-....+++.|
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~l 162 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRAL 162 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHHH
Confidence 00 001111111000 0112222333333332211000 00 0122233345688999
Q ss_pred HHHHHHCCC-EEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 339 RQHLQRLGV-TIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 339 ~~~l~~~Gv-~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
.+.++++|+ .+..++.+..+..+. ++.+|.+.++ .+.|+.||+|+|.|+..+..++
T Consensus 163 ~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g---------~i~a~~vv~a~G~~~~~l~~~~ 219 (387)
T COG0665 163 AAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGG---------TIEADKVVLAAGAWAGELAATL 219 (387)
T ss_pred HHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCc---------cEEeCEEEEcCchHHHHHHHhc
Confidence 999999995 566688998887653 5677777765 4999999999999997654433
No 122
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.90 E-value=1.8e-08 Score=111.34 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+++.|++++++++|+++..+++.+. |++.++ .++.+|.||.|+|.++.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~g--------~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LRLDDG--------RRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EEECCC--------CEEEeCEEEEecCCCch
Confidence 35778888889889999999999999987766553 555543 36899999999999984
No 123
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.90 E-value=1.6e-08 Score=111.58 Aligned_cols=151 Identities=22% Similarity=0.301 Sum_probs=80.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC-ccccccccchhHHHHHHhhccccccccccCC---cccccCcchhhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERG-QAVEQRGRDIGALVVRRMLEMESNFCFGEGG---AGTWSDGKLVTRI 295 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~-~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG---~~~~sdg~l~~~~ 295 (704)
+||+||||||||++||+.|++.|++|+|+|+. ..... .+.......++. ++... ...|....+..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~----cg~~i~~~~l~~-----l~i~~~~~~~~~~~~~~~~-- 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP----CGGAIPPCLIEE-----FDIPDSLIDRRVTQMRMIS-- 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc----CcCCcCHhhhhh-----cCCchHHHhhhcceeEEEc--
Confidence 58999999999999999999999999999997 22111 010000000000 00000 00000000000
Q ss_pred ccCchhHHHHHHHHHHcCCCceee-cCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANIL-VDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSK 374 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~-~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~ 374 (704)
..+...... .....+.+.-.-..+-+.|.+++.+.|++++.. .|+++..+++.+ .|.+.++.
T Consensus 70 ---------------~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~-~v~~~~~~ 132 (388)
T TIGR02023 70 ---------------PSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGV-TLTYRTPK 132 (388)
T ss_pred ---------------CCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeE-EEEEEecc
Confidence 000000000 000111111222346678888888899999755 699987766654 45554311
Q ss_pred CCCCCceeEEecCeEEEcCCCChH
Q 005273 375 DNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 375 ~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
....++..++.|+.||.|+|.++.
T Consensus 133 ~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 133 KGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred ccCCCcceEEEeCEEEECCCCCcH
Confidence 000011247999999999999884
No 124
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.90 E-value=1e-08 Score=113.52 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+.+.|++++++++|+++..+++.+ .|++.++ .++.+|.||.|+|.++.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~g--------~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGV-TVTLSDG--------SVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEE-EEEECCC--------CEEEeCEEEEcCCCChH
Confidence 4578889999988999999999999998776654 3555443 36899999999999885
No 125
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.90 E-value=1.3e-08 Score=111.94 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+.| ++++++++|+++..+++.+ .|.+.++ ..+.+|.||.|+|.++.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~v~~~~g--------~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHV-ELTLDDG--------QQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCee-EEEECCC--------CEEEeeEEEEeCCCCCH
Confidence 47788999998888 9999999999998777654 3555554 36899999999999884
No 126
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.89 E-value=1.2e-08 Score=113.15 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+.+.|++++++++|+++..+++.+ .|.+.++ .++.||.||.|+|.++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~g--------~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDW-LLTLADG--------RQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeE-EEEECCC--------CEEEeCEEEEecCCCch
Confidence 3567788888888899999999999998766654 3555544 36899999999999984
No 127
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.89 E-value=1.9e-08 Score=113.72 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHH----CC--CEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 330 RLIPLLRNFRQHLQR----LG--VTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~----~G--v~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
....+.+.|.+.+++ .| ++|+++++|++|..+++.++.|.+.++ ++.||.||+|+|+|+..+.+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G---------~i~A~~VVvaAG~~S~~La~ 278 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG---------EIRARFVVVSACGYSLLFAQ 278 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC---------EEEeCEEEECcChhHHHHHH
Confidence 445688899999988 77 789999999999887666667776544 69999999999999975443
No 128
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.89 E-value=3.6e-08 Score=113.60 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch--hHHHHHHhhcc-c--cccc---cccCCcccc-c
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI--GALVVRRMLEM-E--SNFC---FGEGGAGTW-S 287 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~--~~~~~~~~l~~-~--~n~~---~g~gG~~~~-s 287 (704)
...++|+||||||+|+++|+.|++.|++|+|+||........+.+ ..... .+++. + ..+. ....+...+ .
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~~~~~~~ 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEAL-RVLQAIGLADEVLPHTTPNHGMRFLDA 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHH-HHHHHcCChhHHHhhcccCCceEEEcC
Confidence 346899999999999999999999999999999997654322211 10000 00000 0 0000 000000000 0
Q ss_pred CcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEE
Q 005273 288 DGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 288 dg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
++.....+. .+. ....+.+....-.-..+.+.|++.+.+. |++++++++|+++..+++.+.
T Consensus 87 ~g~~~~~~~-----------------~~~-~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~ 148 (538)
T PRK06183 87 KGRCLAEIA-----------------RPS-TGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT 148 (538)
T ss_pred CCCEEEEEc-----------------CCC-CCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE
Confidence 111000000 000 0000001000111123556777777775 899999999999988777653
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
|.+.+.++ +..+++||.||.|+|.+|.
T Consensus 149 -v~~~~~~G----~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 149 -VTLTDADG----QRETVRARYVVGCDGANSF 175 (538)
T ss_pred -EEEEcCCC----CEEEEEEEEEEecCCCchh
Confidence 55553222 2357999999999999985
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.89 E-value=2.5e-08 Score=109.94 Aligned_cols=155 Identities=21% Similarity=0.170 Sum_probs=83.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc-------hhHHHHHHhhccccccccccCCcccccCcch
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD-------IGALVVRRMLEMESNFCFGEGGAGTWSDGKL 291 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~-------~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l 291 (704)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.....+.. +.... ..+++.- .+..... ...+.....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~-~~~l~~~-g~~~~~~-~~~~~~~~~ 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSS-QAFLERL-GVWQALD-AARLAPVYD 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHH-HHHHHHc-Cchhhhh-hhcCCcceE
Confidence 468999999999999999999999999999998765321100 00000 0011000 0000000 000000000
Q ss_pred hhhhccCchhHHHHHHHHHHcCCCceeecCCccccC-CCChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEE
Q 005273 292 VTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLG-TDRLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVK 369 (704)
Q Consensus 292 ~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g-~~~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~ 369 (704)
......... .+.........+... ......+.+.|.+.+++.| ++++ +++|+++..+++.+ .|+
T Consensus 82 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~-~v~ 147 (388)
T PRK07608 82 MRVFGDAHA------------RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAA-TLT 147 (388)
T ss_pred EEEEECCCc------------eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeE-EEE
Confidence 000000000 000000000111111 1123457788889998887 9998 99999997766654 466
Q ss_pred EcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 370 VSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 370 ~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+.++ .++.||.||.|+|.++.
T Consensus 148 ~~~g--------~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 148 LADG--------QVLRADLVVGADGAHSW 168 (388)
T ss_pred ECCC--------CEEEeeEEEEeCCCCch
Confidence 6554 36899999999999884
No 130
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.88 E-value=1.6e-08 Score=111.80 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchh--HHHHHHhhcc-cc--ccc-cc--cCCccccc--C
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIG--ALVVRRMLEM-ES--NFC-FG--EGGAGTWS--D 288 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~--~~~~~~~l~~-~~--n~~-~g--~gG~~~~s--d 288 (704)
..+|+|||||++||++|+.|++.|++|+|+||.+..+..+..+. .... .+++. +. .+. .+ ......+. +
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~-~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAF-SALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHH-HHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 46899999999999999999999999999999976643322110 0000 00100 00 000 00 00000000 0
Q ss_pred cchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEE
Q 005273 289 GKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVG 367 (704)
Q Consensus 289 g~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~G 367 (704)
+.....+.. .. .....++.+.. .-.-..+.+.|.+.+.+.+ ++++++++|+++..+++.+.
T Consensus 83 ~~~~~~~~~-----~~--~~~~~~~~~~~----------~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~- 144 (396)
T PRK08163 83 AEEVVRIPT-----GQ--AFRARFGNPYA----------VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT- 144 (396)
T ss_pred CCEEEEecc-----ch--hHHHhcCCcEE----------EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-
Confidence 100000000 00 00011121111 0112346778888887775 99999999999987666443
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
|.+.++ .++.||.||.|+|.++..
T Consensus 145 v~~~~g--------~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 145 VFDQQG--------NRWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEEcCC--------CEEecCEEEECCCcChHH
Confidence 454443 368999999999999864
No 131
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.87 E-value=1.5e-08 Score=106.79 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=111.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHH------cCCcEEEEEeCccccccccc---hhHHHHHHhhccccccccccCCccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAE------LGADVTLIERGQAVEQRGRD---IGALVVRRMLEMESNFCFGEGGAGTWS 287 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~------~g~~v~l~e~~~~~~~~~~~---~~~~~~~~~l~~~~n~~~g~gG~~~~s 287 (704)
....||+|||||||||+||+.|.+ .-.+|.|+||...+|+.... +.......++. .|.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P-------------~wk 140 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLP-------------DWK 140 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCc-------------chh
Confidence 346899999999999999998865 34689999999998865321 11111111111 111
Q ss_pred C-c-chhhhhccCchhHHHHHHHHH---HcCCCceeecCCcccc-CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe
Q 005273 288 D-G-KLVTRIGRNSNSVLAVMNTLV---HFGAPANILVDGKSHL-GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE 361 (704)
Q Consensus 288 d-g-~l~~~~~~~~~~~~~~l~~l~---~~G~~~~~~~~g~~~~-g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~ 361 (704)
+ + .+.+.+..+ .+.++. ++-+|. ......|. -..++..++++|-++++++||+|+.+..+.+++.+
T Consensus 141 e~~apl~t~vT~d------~~~fLt~~~~i~vPv--~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ 212 (621)
T KOG2415|consen 141 EDGAPLNTPVTSD------KFKFLTGKGRISVPV--PSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYD 212 (621)
T ss_pred hcCCccccccccc------ceeeeccCceeecCC--CcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEc
Confidence 0 0 000000000 000110 111111 10101111 12345679999999999999999999999998875
Q ss_pred -CCEEEEEEEcCCCCCCCC-------ceeEEecCeEEEcCCCChHHHHHHHHhCCCc--ccccceeeEE
Q 005273 362 -NARIVGVKVSDSKDNSQS-------DIQKLGFDAVILAVGHSARDIYEMLVSHNIN--LVPKDFAVGL 420 (704)
Q Consensus 362 -~g~v~GV~~~~~~~~~~~-------~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~--l~~~~~avG~ 420 (704)
|+.|.||.+.|-.-.++| ....+.|+..|+|-|..+....++++++++. ..+..|.+|+
T Consensus 213 edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGl 281 (621)
T KOG2415|consen 213 EDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGL 281 (621)
T ss_pred CCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceecccc
Confidence 578999998874322222 2257999999999999987777788888776 3445555554
No 132
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.87 E-value=2.9e-08 Score=104.96 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=76.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNS 299 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~ 299 (704)
+||+|||||++||+||..|++.|++|+|+|+++ .++..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~---------------------------~~~-------- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTT---------------------------TEV-------- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeec---------------------------ccc--------
Confidence 589999999999999999999999999999886 32210000 000
Q ss_pred hhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCC
Q 005273 300 NSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQS 379 (704)
Q Consensus 300 ~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~ 379 (704)
...| +.+ .......+...+.+.+++.|+++++ ++|+++..+++.+ .|.+.++
T Consensus 45 ------------~~~~------~~~--~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~-~v~~~~~------ 96 (300)
T TIGR01292 45 ------------ENYP------GFP--EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPF-KVKTGDG------ 96 (300)
T ss_pred ------------cccC------CCC--CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCee-EEEeCCC------
Confidence 0000 000 0011124777888889999999998 8999987765433 3444433
Q ss_pred ceeEEecCeEEEcCCCChH
Q 005273 380 DIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 380 ~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.||+|+|.+++
T Consensus 97 --~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 97 --KEYTAKAVIIATGASAR 113 (300)
T ss_pred --CEEEeCEEEECCCCCcc
Confidence 36899999999998753
No 133
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.86 E-value=3.5e-08 Score=112.71 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
...++..+...+.+.|++++++++|+++..+++. ++|.+.+..+ ++...+.|+.||+|+|.|+..+..
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~---g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTAT---GKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCC---CCEEEEEcCEEEECCCccHHHHHh
Confidence 3456677788888999999999999999876654 4676654211 113479999999999999976544
No 134
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.85 E-value=1.2e-09 Score=119.30 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHHH
Q 005273 50 RYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTVV 125 (704)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i~ 125 (704)
..+.|...+....++. +|++++|.|++.... .+.... ..|++.++++.||+.+++||+. +. |+.+++++
T Consensus 236 ~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~--~~~~~~----~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l 308 (370)
T cd02929 236 ESEGEGVEFVEMLDEL-PDLWDVNVGDWANDG--EDSRFY----PEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVV 308 (370)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEecCCCccccc--cccccC----CccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 3566777887777654 899999999765322 122222 2588899999999999999963 54 99999999
Q ss_pred hcc-cc----cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeeecccccccc
Q 005273 126 RKS-FD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINIIHDCKKVSD 196 (704)
Q Consensus 126 ~~~-~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~~~c~~~~~ 196 (704)
+.+ +| +|+.|+||+|++|+..+..++ +++|++|+. |..... .+.++ .|.+||.
T Consensus 309 ~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~------i~~Ci~Cn~-C~~~~~-------~~~~~----~C~vNp~ 366 (370)
T cd02929 309 KSGILDLIGAARPSIADPFLPKKIREGRIDD------IRECIGCNI-CISGDE-------GGVPM----RCTQNPT 366 (370)
T ss_pred HcCCCCeeeechHhhhCchHHHHHHcCCccc------cccCCchhh-hhcccc-------CCCCc----eeccCcc
Confidence 876 99 999999999999999997653 788999987 644211 12344 3999975
No 135
>PLN02463 lycopene beta cyclase
Probab=98.85 E-value=2.4e-08 Score=111.64 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 216 ~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
....+||+||||||||+++|..|++.|++|+|+|+.+...-. . ..+.|...+...+-.-.. ...|.+..+..
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p-~-~~g~w~~~l~~lgl~~~l----~~~w~~~~v~~-- 96 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP-N-NYGVWVDEFEALGLLDCL----DTTWPGAVVYI-- 96 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc-c-ccchHHHHHHHCCcHHHH----HhhCCCcEEEE--
Confidence 344689999999999999999999999999999997542100 0 001111000000000000 00111000000
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
.. +. ......++ +......+.+.|.+++.+.|++++ .++|+++..+++. ..|.+.++
T Consensus 97 ~~---------------~~---~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG-- 153 (447)
T PLN02463 97 DD---------------GK---KKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDG-- 153 (447)
T ss_pred eC---------------CC---CccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCC--
Confidence 00 00 00001111 112233577888888888999987 5789998876665 35666654
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.++.|+.||.|+|..+.
T Consensus 154 ------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 154 ------VKIQASLVLDATGFSRC 170 (447)
T ss_pred ------CEEEcCEEEECcCCCcC
Confidence 37999999999998864
No 136
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.85 E-value=5e-08 Score=109.01 Aligned_cols=68 Identities=28% Similarity=0.322 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
.++-.....+.+.|.+++..++|+.+..+++ ++||.+.|..+ ++...++|+.||.|||.|+..+.+++
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~t---g~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRET---GETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCC---CcEEEEEcCEEEECCCccHHHHHHhh
Confidence 4666666778889999999999999999888 99999998653 24678999999999999998776665
No 137
>PRK08013 oxidoreductase; Provisional
Probab=98.84 E-value=2.9e-08 Score=110.11 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+. |++++++++|+++..+++.+ .|.+.++ .+++||.||.|+|.+|.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v-~v~~~~g--------~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEA-FLTLKDG--------SMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE-EEEEcCC--------CEEEeeEEEEeCCCCcH
Confidence 4677888888776 79999999999997766544 3555544 37999999999999985
No 138
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.84 E-value=4.2e-08 Score=111.02 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCC
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNI 409 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi 409 (704)
....+...|.+.+++.|++++++++|+++..+++..+.+.+.+... ++..++.||.||+|+|+|+..+ ++..|+
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~---g~~~~i~A~~VV~AAG~~s~~L---a~~~Gi 249 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRT---GGKRTLNTRFVFVGAGGGALPL---LQKSGI 249 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccC---CceEEEECCEEEECCCcchHHH---HHHcCC
Confidence 4456889999999999999999999999987544323344332111 0123689999999999998654 444555
Q ss_pred c
Q 005273 410 N 410 (704)
Q Consensus 410 ~ 410 (704)
+
T Consensus 250 ~ 250 (483)
T TIGR01320 250 P 250 (483)
T ss_pred C
Confidence 4
No 139
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.4e-08 Score=104.67 Aligned_cols=112 Identities=27% Similarity=0.373 Sum_probs=77.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.+||+|||||||||+||+++++.+.+ ++|+|+... |+.-. .+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-gg~~~-------------------------~~----------- 45 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-GGQLT-------------------------KT----------- 45 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-CCccc-------------------------cc-----------
Confidence 58999999999999999999999999 666665533 21100 00
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCcc-ccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKS-HLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~-~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
....+.| +.+......+.+.+.++++..|+++.. ..|..+...++ .+-|++.++
T Consensus 46 --------------------~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~--- 100 (305)
T COG0492 46 --------------------TDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKG--- 100 (305)
T ss_pred --------------------eeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCC---
Confidence 0000111 112234456889999999999999887 67777765544 555666655
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+++|+.||+|||...+
T Consensus 101 ------~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 101 ------TYEAKAVIIATGAGAR 116 (305)
T ss_pred ------eEEEeEEEECcCCccc
Confidence 4999999999998874
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.84 E-value=3.3e-08 Score=108.76 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+.+. |++++++++|+++..+++.+ .|.+.++ .++.||.||.|+|.++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~g--------~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYV-RVTLDNG--------QQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeE-EEEECCC--------CEEEeeEEEEecCCChH
Confidence 35788888888884 99999999999998766654 3555443 36899999999999874
No 141
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.84 E-value=4.7e-08 Score=82.62 Aligned_cols=80 Identities=30% Similarity=0.431 Sum_probs=65.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCch
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSN 300 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~ 300 (704)
+|+|||||+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 5899999999999999999999999999999865200
Q ss_pred hHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCC
Q 005273 301 SVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDS 373 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~ 373 (704)
-...+...+.+.+++.||++++++.+.++..+++.+. |+++|+
T Consensus 38 -----------------------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~~~g 80 (80)
T PF00070_consen 38 -----------------------------FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTLEDG 80 (80)
T ss_dssp -----------------------------SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred -----------------------------cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence 0013667788889999999999999999998877666 777653
No 142
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=98.83 E-value=9.4e-09 Score=112.02 Aligned_cols=251 Identities=21% Similarity=0.220 Sum_probs=121.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcc---ccccccc-cCCcccc-cCcchhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEM---ESNFCFG-EGGAGTW-SDGKLVT 293 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~---~~n~~~g-~gG~~~~-sdg~l~~ 293 (704)
.+|-+|||+|.||+.+|..+++.|+.+.++-+-.+....+....+.....+.+. +..+.+. ......| .|.+-+.
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i~ 134 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAIH 134 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhhh
Confidence 389999999999999999999999999999886554322222111111111111 0111111 1111122 1222221
Q ss_pred hhccCchhHHHHHHHHHHcCCCceeecCCcccc----CC-----------------C-ChHHHHHHHHHHHHHCCCEEEe
Q 005273 294 RIGRNSNSVLAVMNTLVHFGAPANILVDGKSHL----GT-----------------D-RLIPLLRNFRQHLQRLGVTIKF 351 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~----g~-----------------~-~~~~l~~~L~~~l~~~Gv~i~~ 351 (704)
++... .......+..+|.|+....+++++. +. + -...+...|..+..+....+.-
T Consensus 135 ym~~e---a~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~~~~~f~ 211 (642)
T KOG2403|consen 135 YMCRE---APKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRHNTSFFV 211 (642)
T ss_pred HHHhh---cchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhccchhhHH
Confidence 11111 1123335667788877766654211 00 0 0012333333333322211111
Q ss_pred CeEEEEEEEeCCEEEEEE---EcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccccceeeEEEEecchhh
Q 005273 352 GTRVDDLLIENARIVGVK---VSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEHPQEL 428 (704)
Q Consensus 352 ~t~V~~i~~~~g~v~GV~---~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~~~~avG~~~~~p~~~ 428 (704)
.--..+++...+.+.++. +.++ ....++++.+|+|+|+.++..+.. ...+.......++-.+...|...
T Consensus 212 ~yfa~dll~~~g~~~~~va~~~~d~------~i~~~r~~~ti~a~gg~G~~y~s~--t~~~t~TgdG~a~~~ra~~~l~d 283 (642)
T KOG2403|consen 212 EYFALDLLMSQGECVGVIALNLEDG------TIHRFRAKNTILATGGYGRAYFSC--TSAHTCTGDGNAMASRAGAPLSD 283 (642)
T ss_pred HHHHHHHHHhccCceEEEEEEeecc------cceeeeeeeeEEEEeccceEEEEe--ccCeeEccCCCeEEeeccCCCcc
Confidence 111122222222233332 2333 235789999999999877532111 12233333344444555555555
Q ss_pred hccccc--------ccchhhhcccCCCCccccccceecccCCCCC-CCCccccchhhhhhh
Q 005273 429 INSIQY--------SELATEVQKGRGKVPVADYKVAKYVSGEDGD-ALSGVVTTNRSCYSF 480 (704)
Q Consensus 429 ~~~~~~--------~~l~~e~~~g~g~~~~~d~~~~~~~~~~~~~-e~a~Rd~~~r~v~~f 480 (704)
++..|+ +-+++|..+|+|+...+.-...+....+++. ++++||+++|++-..
T Consensus 284 ~efvqfhpt~i~g~Gcliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tme 344 (642)
T KOG2403|consen 284 MEFVQFHPTGIYGAGCLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTME 344 (642)
T ss_pred cceeeeeeecccccceeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhh
Confidence 555554 3467888888887655421111122223333 788999998887654
No 143
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.83 E-value=8.9e-08 Score=109.30 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
...++..+...++++|++++.+++|+++..+++ .++|.+.++.+ +..++.|+.||+|+|.|+..+..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~g----~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGG-LWRVETRDADG----ETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCC-EEEEEEEeCCC----CEEEEEecEEEECCCccHHHHHh
Confidence 345777788888999999999999999987655 45677665432 23579999999999999976544
No 144
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.2e-08 Score=94.57 Aligned_cols=117 Identities=27% Similarity=0.338 Sum_probs=77.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc-c
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG-R 297 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~-~ 297 (704)
..+|+|||+|||+-.||+++++.-.+.+|||-...-+ .+.|| +|.+... +
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~----------------------i~pGG-------QLtTTT~ve 58 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG----------------------IAPGG-------QLTTTTDVE 58 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC----------------------cCCCc-------eeeeeeccc
Confidence 3589999999999999999999999999999764311 00011 1111000 0
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
+ --|.|. ......+++.|+++.++.|.+|+.++ |.++..... ..-+.+..
T Consensus 59 N------------fPGFPd-----------gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ssk-pF~l~td~----- 108 (322)
T KOG0404|consen 59 N------------FPGFPD-----------GITGPELMDKMRKQSERFGTEIITET-VSKVDLSSK-PFKLWTDA----- 108 (322)
T ss_pred c------------CCCCCc-----------ccccHHHHHHHHHHHHhhcceeeeee-hhhccccCC-CeEEEecC-----
Confidence 0 001111 12234688999999999999998774 677665443 33344432
Q ss_pred CCceeEEecCeEEEcCCCChH
Q 005273 378 QSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.||+||+|||+.++
T Consensus 109 ----~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 109 ----RPVTADAVILATGASAK 125 (322)
T ss_pred ----CceeeeeEEEeccccee
Confidence 36899999999999875
No 145
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.83 E-value=4.6e-08 Score=107.45 Aligned_cols=57 Identities=11% Similarity=0.242 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 332 IPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 332 ~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+.|.+.+.+.+ ++++++++++++..+++.+. |.+.++ +++||.||.|+|.+|.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~~---------~~~adlvIgADG~~S~ 161 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFDDK---------QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEcCC---------EEeeCEEEEeCCCCch
Confidence 457788888888875 89999999999987776543 555432 6999999999999985
No 146
>PRK07236 hypothetical protein; Provisional
Probab=98.82 E-value=5.9e-08 Score=107.07 Aligned_cols=35 Identities=43% Similarity=0.763 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..+|+|||||++||++|+.|++.|++|+|+||.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 47899999999999999999999999999999864
No 147
>PRK07045 putative monooxygenase; Reviewed
Probab=98.82 E-value=1.6e-08 Score=111.50 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=84.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc--hhHHHHHHhhcc-c--cccc-cc---cCCcccccCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD--IGALVVRRMLEM-E--SNFC-FG---EGGAGTWSDG 289 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~--~~~~~~~~~l~~-~--~n~~-~g---~gG~~~~sdg 289 (704)
.++|+||||||+|+.+|+.|++.|++|+|+|+.+........ +.... ..+++. + ..+. .+ ......+.++
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~-~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSG-IGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccH-HHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 579999999999999999999999999999999865321110 00000 001100 0 0000 00 0000011111
Q ss_pred chhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEEEeCCE-EEE
Q 005273 290 KLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLLIENAR-IVG 367 (704)
Q Consensus 290 ~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~~g~-v~G 367 (704)
+....+. + .. ....+ +.. .-.-..+.+.|.+.+.+ .|++++++++|+++..+++. ++.
T Consensus 84 ~~~~~~~---------------~--~~-~~~~g-~~~-~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~ 143 (388)
T PRK07045 84 ELIASLD---------------Y--RS-ASALG-YFI-LIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTS 143 (388)
T ss_pred cEEEEec---------------C--Cc-cccCC-ceE-EccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEE
Confidence 1110000 0 00 00000 000 01112466777877764 47999999999999876543 456
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
|++.++ .++.+|.||.|+|.+|..
T Consensus 144 v~~~~g--------~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 144 VTLSDG--------ERVAPTVLVGADGARSMI 167 (388)
T ss_pred EEeCCC--------CEEECCEEEECCCCChHH
Confidence 776654 368999999999999853
No 148
>PLN02697 lycopene epsilon cyclase
Probab=98.81 E-value=4.7e-08 Score=111.17 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...+||+||||||||+++|+.|++.|++|+|+|+....... .+.|.......+ +...-...|.+......
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n----~GvW~~~l~~lg----l~~~i~~~w~~~~v~~~-- 175 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN----YGVWEDEFKDLG----LEDCIEHVWRDTIVYLD-- 175 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc----cccchhHHHhcC----cHHHHHhhcCCcEEEec--
Confidence 34589999999999999999999999999999986443211 001100000000 00000001111000000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
.+ .....+.++ +.-.-..+.+.|.+++.+.|+++ .+++|+++..+++.+..+...++
T Consensus 176 ---------------~~---~~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG--- 232 (529)
T PLN02697 176 ---------------DD---KPIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDG--- 232 (529)
T ss_pred ---------------CC---ceeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCC---
Confidence 00 000011111 11223457788888888899998 67899998876665544444443
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.++.|+.||+|+|.++.
T Consensus 233 -----~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 233 -----RVIPCRLATVASGAASG 249 (529)
T ss_pred -----cEEECCEEEECCCcChh
Confidence 36999999999999984
No 149
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.81 E-value=7.9e-08 Score=111.03 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccccc--chhHHHHHHhhcc-ccccccccCCcccccCcchhhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR--DIGALVVRRMLEM-ESNFCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~--~~~~~~~~~~l~~-~~n~~~g~gG~~~~sdg~l~~~ 294 (704)
..++|+||||||+||++|+.|++.|++|+|+||.+......+ .+..... .+++. +..-.+...+. .|.......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~-~~l~~lGl~~~l~~~~~-~~~~~~~~~- 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSL-EIFDRLGCGERMVDKGV-SWNVGKVFL- 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHH-HHHHHcCCcHHHHhhCc-eeeceeEEe-
Confidence 457999999999999999999999999999999975432211 1111000 00000 00000000000 000000000
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCC
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDS 373 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~ 373 (704)
... .+..+..... .....+....-.-..+.+.|.+.+.+. +++++++++|+++..+++.+. +.+.+.
T Consensus 99 -~~~---------~~~~~~~~~~-~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~ 166 (547)
T PRK08132 99 -RDE---------EVYRFDLLPE-PGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETP 166 (547)
T ss_pred -CCC---------eEEEecCCCC-CCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECC
Confidence 000 0000000000 000000000011123556777777776 799999999999987766543 444332
Q ss_pred CCCCCCceeEEecCeEEEcCCCChH
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
++ ..++++|.||.|+|.++.
T Consensus 167 ~g-----~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 167 DG-----PYTLEADWVIACDGARSP 186 (547)
T ss_pred CC-----cEEEEeCEEEECCCCCcH
Confidence 22 146899999999999985
No 150
>PRK09126 hypothetical protein; Provisional
Probab=98.80 E-value=6.3e-08 Score=106.89 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH-CCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQR-LGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+ .|++++++++|+++..+++.+ .|.+.++ .++.||.||.|+|..+.
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~~~g--------~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTLANG--------RRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEEcCC--------CEEEeCEEEEeCCCCch
Confidence 355666666654 589999999999998766643 4666544 37999999999999875
No 151
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.80 E-value=7e-08 Score=113.89 Aligned_cols=62 Identities=24% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 328 TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 328 ~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
......++..|.+.+++ |++++++++|+++..+++.+. |.+.++ ..+.||.||+|+|.++..
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~t~~g--------~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LDFAGG--------TLASAPVVVLANGHDAAR 465 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EEECCC--------cEEECCEEEECCCCCccc
Confidence 33455788999999988 999999999999988777654 555443 356899999999999864
No 152
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.80 E-value=6.5e-08 Score=106.70 Aligned_cols=150 Identities=24% Similarity=0.358 Sum_probs=82.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc-cccchhHHHHHHhhcc-c--cccc-cc--cCCccccc-Ccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ-RGRDIGALVVRRMLEM-E--SNFC-FG--EGGAGTWS-DGK 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~-~~~~~~~~~~~~~l~~-~--~n~~-~g--~gG~~~~s-dg~ 290 (704)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.... +...+... ...+++. + ..+. .+ ......|. ++.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~-s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGP-SIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHH-HHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 57999999999999999999999999999999875421 11110000 0011110 0 0000 00 00000000 000
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeec---CCccccC-CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILV---DGKSHLG-TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~---~g~~~~g-~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
... .+...+. .+....+ .-....+.+.|.+.+.+.+...+++++|+++..+++.+.
T Consensus 86 ~~~--------------------~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 145 (388)
T PRK07494 86 LIR--------------------APEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVT 145 (388)
T ss_pred CCC--------------------CceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEE
Confidence 000 0000000 0000001 111234778888888877544488999999987776654
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
|++.++ .++.||.||.|+|.++.
T Consensus 146 -v~~~~g--------~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 146 -VTLADG--------TTLSARLVVGADGRNSP 168 (388)
T ss_pred -EEECCC--------CEEEEeEEEEecCCCch
Confidence 555543 36899999999999884
No 153
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.80 E-value=5.7e-08 Score=107.63 Aligned_cols=152 Identities=25% Similarity=0.301 Sum_probs=79.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNS 299 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~ 299 (704)
+||+||||||||++||+.|+++|++|+|+|+....+... +.......+.. ++ .+ .++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c---g~~i~~~~l~~-----~g-----~~--~~~~~------ 59 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC---GGAIPLCMVDE-----FA-----LP--RDIID------ 59 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc---cccccHhhHhh-----cc-----Cc--hhHHH------
Confidence 489999999999999999999999999999976533211 11000000000 00 00 00000
Q ss_pred hhHHHHHHHHHHcCCCc--eeec----CCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE--eCCEEEEEEEc
Q 005273 300 NSVLAVMNTLVHFGAPA--NILV----DGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI--ENARIVGVKVS 371 (704)
Q Consensus 300 ~~~~~~l~~l~~~G~~~--~~~~----~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~--~~g~v~GV~~~ 371 (704)
...+.+. .-.+. .+.. ....+.+.-.-..+-+.|.+.+.+.|++++.++ +.++.. +.+...+|++.
T Consensus 60 ----~~i~~~~-~~~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~ 133 (398)
T TIGR02028 60 ----RRVTKMK-MISPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYI 133 (398)
T ss_pred ----hhhceeE-EecCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEe
Confidence 0000000 00000 0000 001111112223466778888889999998775 766643 22344455543
Q ss_pred CCC-CCCCCceeEEecCeEEEcCCCChH
Q 005273 372 DSK-DNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 372 ~~~-~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+ +...++..+++|+.||.|+|..+.
T Consensus 134 ~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 134 SSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred eccccccCCCccEEEeCEEEECCCcchH
Confidence 211 000012247999999999999885
No 154
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.80 E-value=3e-08 Score=109.59 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEc-CCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVS-DSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~-~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+.|++++++++++++...++....|++. ++ +..+++||.||.|+|..|.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G------~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDG------EEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCC------eEEEEEeCEEEECCCCCCc
Confidence 356677777778899999999999987533333456653 33 1247999999999999884
No 155
>PLN02985 squalene monooxygenase
Probab=98.80 E-value=9.1e-08 Score=109.15 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=87.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc--hhHHHHHHhhc---cccccc----cccCCccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD--IGALVVRRMLE---MESNFC----FGEGGAGTWS 287 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~--~~~~~~~~~l~---~~~n~~----~g~gG~~~~s 287 (704)
...+||+|||||++|+.+|+.|++.|++|+|+||......+... +..... ..+. ....+. ....+...|.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~-~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGR-FMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHH-HHHHHcCCcchhhhccCcccccEEEEE
Confidence 44679999999999999999999999999999997542222110 000000 0000 000000 0000011111
Q ss_pred Ccchh-hhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEE
Q 005273 288 DGKLV-TRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARI 365 (704)
Q Consensus 288 dg~l~-~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v 365 (704)
+++.. ..+... ..+. ...+....-....+.+.|++++.+. +++++.+ +++++..+++.+
T Consensus 120 ~g~~~~~~~~~~------------~~~~------~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v 180 (514)
T PLN02985 120 DGKEAVAPFPVD------------NNNF------PYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVI 180 (514)
T ss_pred CCEEEEEeCCCC------------CcCC------CcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEE
Confidence 11110 000000 0000 0000000111235788888888776 6888865 577877777778
Q ss_pred EEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 366 VGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 366 ~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.||++.+.++ +..++.||.||.|+|.+|..
T Consensus 181 ~gV~~~~~dG----~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 181 KGVTYKNSAG----EETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred EEEEEEcCCC----CEEEEECCEEEECCCCchHH
Confidence 8888764332 23467899999999999863
No 156
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.80 E-value=1.6e-07 Score=106.06 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe--C--CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE--N--ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~--~--g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+...++..|.+.|+++||+|+++++|++|..+ + ++|+||.+...+. .+......+|.||+|+|+...
T Consensus 224 qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~--~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 224 QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGK--EETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCc--eeEEEecCCCEEEEeCCcCcc
Confidence 34568999999999999999999999999885 3 5789998864211 112234567999999999764
No 157
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.79 E-value=2e-09 Score=117.11 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=90.8
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC-
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS- 115 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~- 115 (704)
++|-. +...++-.+.|..++.++.++.++|++++|.|.+....-..+. ..+ .+++.++.+.||+.+++||..
T Consensus 208 ~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-~~~----~~~~~~~~~~ik~~v~iPVi~~ 282 (353)
T cd02930 208 IYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIAT-SVP----RGAFAWATAKLKRAVDIPVIAS 282 (353)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc-cCC----chhhHHHHHHHHHhCCCCEEEc
Confidence 45533 3333445778888999999999999999999843222111111 112 477788999999999999963
Q ss_pred --CC-hhhHHHHHhcc-cc----cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccc
Q 005273 116 --ML-PAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVG 170 (704)
Q Consensus 116 --~~-p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (704)
+. |+.++++++.+ +| +|+.|+||+|+.|+..+..++ +++|++|+..|..
T Consensus 283 G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~~~~------i~~Ci~cn~~C~~ 339 (353)
T cd02930 283 NRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGRADE------INTCIACNQACLD 339 (353)
T ss_pred CCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCCccc------CcCchhhHHHHHH
Confidence 54 99999999876 99 999999999999999997643 7899999865543
No 158
>PRK07588 hypothetical protein; Provisional
Probab=98.79 E-value=3.4e-08 Score=109.13 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+.+.|.+.+. .+++++++++|+++..+++.+. |.+.++ ..+.+|.||.|+|.+|..
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~-v~~~~g--------~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVR-VTFERG--------TPRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEE-EEECCC--------CEEEeCEEEECCCCCccc
Confidence 5555655553 4799999999999988777654 556554 357899999999998853
No 159
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.78 E-value=8.1e-08 Score=106.51 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccch--hHHHHHHhhccc--cccc-cccCC-cccccCcchhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDI--GALVVRRMLEME--SNFC-FGEGG-AGTWSDGKLVT 293 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~--~~~~~~~~l~~~--~n~~-~g~gG-~~~~sdg~l~~ 293 (704)
.+|+||||||+||.+|+.|+++|++|+|+|+.+.....+..+ .......+-..+ ..+. .+... .-.+.++....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999987653222111 110000000000 0000 00000 00000100000
Q ss_pred hhccCchhHHHHHHHH-HHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEc
Q 005273 294 RIGRNSNSVLAVMNTL-VHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVS 371 (704)
Q Consensus 294 ~~~~~~~~~~~~l~~l-~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~ 371 (704)
..... ...... ..++ .++. ...-..+.+.|.+.+.+. +++++++++|+++..+++.+. +++.
T Consensus 83 ~~~~~-----~~~~~~~~~~~---------~~~~-~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~ 146 (400)
T PRK06475 83 PLLAM-----QLGDLARKRWH---------HPYI-VCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATII 146 (400)
T ss_pred eEEEe-----cchhhhhhcCC---------CCce-eECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEE
Confidence 00000 000000 0000 0110 111234778888888664 899999999999987666543 3333
Q ss_pred CCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 372 DSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 372 ~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+..+. .++.+|.||.|+|.+|..
T Consensus 147 ~~~~~-----~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 147 RTNSV-----ETVSAAYLIACDGVWSML 169 (400)
T ss_pred eCCCC-----cEEecCEEEECCCccHhH
Confidence 22211 468999999999999853
No 160
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.77 E-value=4e-08 Score=109.16 Aligned_cols=182 Identities=22% Similarity=0.274 Sum_probs=112.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHH-HH------------------HHhhccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGAL-VV------------------RRMLEMESNFC 277 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~-~~------------------~~~l~~~~n~~ 277 (704)
..-+|+|||||.+|..+|++||++|.+ .+++|+.....+.+.-..+. +. ...+..++.+.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~ 117 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH 117 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999999999999998 55555554332222111110 00 00111111111
Q ss_pred cccCCcccccCcchhh-hhccCchhHHHHHHHHHHcCCCceeecCC-------------------ccccCCCChHHHHHH
Q 005273 278 FGEGGAGTWSDGKLVT-RIGRNSNSVLAVMNTLVHFGAPANILVDG-------------------KSHLGTDRLIPLLRN 337 (704)
Q Consensus 278 ~g~gG~~~~sdg~l~~-~~~~~~~~~~~~l~~l~~~G~~~~~~~~g-------------------~~~~g~~~~~~l~~~ 337 (704)
.+...++.+.. ..-.........+..-..+|...+++... .|+.|......+..+
T Consensus 118 -----tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~a 192 (856)
T KOG2844|consen 118 -----TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQA 192 (856)
T ss_pred -----cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHH
Confidence 01112222211 00011111222233334455554443321 155566666778899
Q ss_pred HHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCccccc
Q 005273 338 FRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPK 414 (704)
Q Consensus 338 L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~~ 414 (704)
|...+.++|+.|+.++.|++|..+++++.||.+..+ .|++..||.|+|-|++....|.. ..+++.|.
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G---------~iet~~~VNaaGvWAr~Vg~m~g-vkvPL~p~ 259 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHVETDKFGGVETPHG---------SIETECVVNAAGVWAREVGAMAG-VKVPLVPM 259 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEeecCCccceeccCc---------ceecceEEechhHHHHHhhhhcC-Ccccceee
Confidence 999999999999999999999999988889998876 59999999999999987766553 45555554
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=6.9e-08 Score=110.64 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...+||+||||||+|++||..|++.|++|+|+++. +|++....
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~----------------------------------- 251 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT----------------------------------- 251 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-----------------------------------
Confidence 44689999999999999999999999999999763 43321000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
.+++. +.+.+ ......+.+.+.+.++++|++++++++|.++..+++. +.|.+.++
T Consensus 252 ---------------~~~~~---~~~~~---~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g--- 306 (517)
T PRK15317 252 ---------------MGIEN---FISVP---ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANG--- 306 (517)
T ss_pred ---------------Ccccc---cCCCC---CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCC---
Confidence 00000 00000 1123357888999999999999999999999776543 34555443
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.||+|||..++
T Consensus 307 -----~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 307 -----AVLKAKTVILATGARWR 323 (517)
T ss_pred -----CEEEcCEEEECCCCCcC
Confidence 36899999999998653
No 162
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.77 E-value=3.3e-08 Score=102.28 Aligned_cols=167 Identities=25% Similarity=0.298 Sum_probs=97.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhH--------------HHHHHhhcc------ccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGA--------------LVVRRMLEM------ESNFC 277 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~--------------~~~~~~l~~------~~n~~ 277 (704)
...+|+|||+|.-|+++|+.|+++|.++.++|+-+.+..++...+. .+..+.++. .....
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 3578999999999999999999999999999999876554422111 011111111 11111
Q ss_pred cccCCcccccCcchhhhhccCchhHHHHHHHHHHcC--------------CCce-eecCC-----ccccCCCChHHHHHH
Q 005273 278 FGEGGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFG--------------APAN-ILVDG-----KSHLGTDRLIPLLRN 337 (704)
Q Consensus 278 ~g~gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G--------------~~~~-~~~~g-----~~~~g~~~~~~l~~~ 337 (704)
+..+-.-.|.+..-- .+...+...+...+ .|.. .+.++ .++.|...+..-++.
T Consensus 86 ~~~~t~~~~~~~~e~-------~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 86 LHCGTGLLISGDPER-------QRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA 158 (399)
T ss_pred ecccceeeecCcHHH-------HHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence 111111112111100 00111111111111 1100 11111 123344555667889
Q ss_pred HHHHHHHCCCEEEeCeEEEEEEE--eCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 338 FRQHLQRLGVTIKFGTRVDDLLI--ENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 338 L~~~l~~~Gv~i~~~t~V~~i~~--~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++..++++|+.|+.+.+|..+.. +++...+|.+.++ ..+.|+.+|+|+|.|.+.
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g--------s~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG--------SIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccC--------CeeecceEEEEecHHHHh
Confidence 99999999999999999987764 3455667777766 369999999999999764
No 163
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.76 E-value=8e-08 Score=105.94 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+...|.+.+.+. |++++++++|+++..+++.+ .|++.++ .++.+|.||.|+|.+|.
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~-~v~~~~g--------~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN-RVTLESG--------AEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeE-EEEECCC--------CEEEeeEEEEecCCCch
Confidence 3556677777665 79999999999998876654 3666654 37999999999999985
No 164
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.76 E-value=9.1e-08 Score=105.65 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+. |++++++++|+++..+++.+ .|.+.++ .++.||.||.|+|.++.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g--------~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLADG--------EEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEECCC--------CEEEeCEEEEeCCCCch
Confidence 4667788888777 99999999999997766543 4555543 36899999999999985
No 165
>PRK06753 hypothetical protein; Provisional
Probab=98.76 E-value=5.7e-08 Score=106.50 Aligned_cols=36 Identities=36% Similarity=0.660 Sum_probs=33.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
.+|+||||||+|+++|+.|++.|++|+|+||.+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 379999999999999999999999999999998654
No 166
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.75 E-value=2.9e-07 Score=103.39 Aligned_cols=37 Identities=49% Similarity=0.686 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
...+||+||||||||++||+.|++.|++|+|+|+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3468999999999999999999999999999999753
No 167
>PRK05868 hypothetical protein; Validated
Probab=98.75 E-value=5.5e-08 Score=106.81 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
++|+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~ 37 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR 37 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999987654
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.75 E-value=7.8e-08 Score=111.01 Aligned_cols=112 Identities=24% Similarity=0.325 Sum_probs=75.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.+||+|||||||||+||+.|+++|++|+|+|++. .|+.... .. .
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~--------------------------~~-~-------- 47 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITI--------------------------TS-E-------- 47 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEe--------------------------cc-c--------
Confidence 5899999999999999999999999999999864 3321100 00 0
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
+ ..+.+. .......+.+.+.+.+++.|++++ +++|+.+..+++ ...|.+.++
T Consensus 48 ---------------i---~~~pg~---~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~-~~~V~~~~g----- 99 (555)
T TIGR03143 48 ---------------V---VNYPGI---LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGD-IKTIKTARG----- 99 (555)
T ss_pred ---------------c---ccCCCC---cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCC-EEEEEecCC-----
Confidence 0 000000 001123577888888888999985 778888876443 334544332
Q ss_pred CceeEEecCeEEEcCCCChH
Q 005273 379 SDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.++.||+|||++++
T Consensus 100 ----~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 100 ----DYKTLAVLIATGASPR 115 (555)
T ss_pred ----EEEEeEEEECCCCccC
Confidence 5789999999999764
No 169
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.75 E-value=9.2e-08 Score=105.51 Aligned_cols=141 Identities=22% Similarity=0.238 Sum_probs=80.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCch
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSN 300 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~ 300 (704)
||+||||||||+++|+.|++.|++|+|+|+.+..++... ..++...+.... +...-...|.....+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------- 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHT--YGVWDDDLSDLG----LADCVEHVWPDVYEY-------- 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcc--ccccHhhhhhhc----hhhHHhhcCCCceEE--------
Confidence 799999999999999999999999999999876542110 000100000000 000000001000000
Q ss_pred hHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCc
Q 005273 301 SVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSD 380 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~ 380 (704)
..+........++ .......+.+.|.+.+.+.|++++ .++|.++..+++..+.|.+.++
T Consensus 67 ------------~~~~~~~~~~~~~-~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g------- 125 (388)
T TIGR01790 67 ------------RFPKQPRKLGTAY-GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGG------- 125 (388)
T ss_pred ------------ecCCcchhcCCce-eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCC-------
Confidence 0000000000011 112234577888888888899886 5678888766454555666554
Q ss_pred eeEEecCeEEEcCCCCh
Q 005273 381 IQKLGFDAVILAVGHSA 397 (704)
Q Consensus 381 ~~~i~Ad~VVlAtG~~s 397 (704)
.+++|+.||.|+|.++
T Consensus 126 -~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 126 -QRIQARLVIDARGFGP 141 (388)
T ss_pred -CEEEeCEEEECCCCch
Confidence 3799999999999987
No 170
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.75 E-value=1.1e-07 Score=105.49 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+. |++++++++|+++..+++.+ .|.+.++ .++.||.||.|+|..|.
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~-~v~~~~g--------~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEA-WLTLDNG--------QALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE-EEEECCC--------CEEEeCEEEEeCCCCCh
Confidence 3566777877765 79999999999998766644 4666554 37999999999999874
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.73 E-value=1.1e-07 Score=108.94 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...+||+||||||||++||..|++.|++|+|++. .+|+.....
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~----------------------------------- 252 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT----------------------------------- 252 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-----------------------------------
Confidence 4468999999999999999999999999999974 233221000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
.++.. ..+.+ ......+.+.+.+.++++|++++++++|.++..+++. ..|.+.++
T Consensus 253 ---------------~~~~~---~~~~~---~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g--- 307 (515)
T TIGR03140 253 ---------------VGIEN---LISVP---YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESG--- 307 (515)
T ss_pred ---------------cCccc---ccccC---CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCC---
Confidence 00000 00000 0122357788888999999999999999998765543 34555443
Q ss_pred CCCceeEEecCeEEEcCCCCh
Q 005273 377 SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+.+|.||+|||..+
T Consensus 308 -----~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 308 -----EVLKAKSVIVATGARW 323 (515)
T ss_pred -----CEEEeCEEEECCCCCc
Confidence 3689999999999875
No 172
>PRK11445 putative oxidoreductase; Provisional
Probab=98.72 E-value=1.7e-07 Score=102.02 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=31.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
+||+||||||||+++|+.|++. ++|+|+|+.+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 6899999999999999999999 999999998754
No 173
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.72 E-value=8.7e-08 Score=105.92 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEc-CCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVS-DSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~-~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+.|+.++++++++.+...++....|.+. ++. ..+++||.||.|+|.+|.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~------~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE------RHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe------EEEEEeCEEEECCCCchh
Confidence 466778888888899999999887775433333456664 442 247899999999999985
No 174
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=1.6e-07 Score=103.70 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 333 PLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 333 ~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+.|.+.+.+. |++++++++|+++..+++.+. |.+.++ ..+.+|.||.|+|.++.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~g--------~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDDG--------ETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECCC--------CEEEeCEEEEecCCChh
Confidence 3556777777664 799999999999977666543 665544 36899999999999985
No 175
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.72 E-value=1.7e-07 Score=109.52 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEEeCccccccccch--hHHHHHHhhcc-c--cccc-cc--cCCcccccCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL-GADVTLIERGQAVEQRGRDI--GALVVRRMLEM-E--SNFC-FG--EGGAGTWSDG 289 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~-g~~v~l~e~~~~~~~~~~~~--~~~~~~~~l~~-~--~n~~-~g--~gG~~~~sdg 289 (704)
..+|+||||||+||++|+.|++. |.+|+|+|+.+.....++.. .... -.+++. + ..+. .+ ......|...
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prt-leiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRT-MEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHH-HHHHHhccchHHHHhhcccccceEEEcCC
Confidence 57999999999999999999994 99999999986543222211 1000 001110 0 0000 00 0000111110
Q ss_pred c-hhhhhccCchhHHHHHHHHHHcCCCceee--cCCccccCCCChHHHHHHHHHHHHHCC--CEEEeCeEEEEEEEeCC-
Q 005273 290 K-LVTRIGRNSNSVLAVMNTLVHFGAPANIL--VDGKSHLGTDRLIPLLRNFRQHLQRLG--VTIKFGTRVDDLLIENA- 363 (704)
Q Consensus 290 ~-l~~~~~~~~~~~~~~l~~l~~~G~~~~~~--~~g~~~~g~~~~~~l~~~L~~~l~~~G--v~i~~~t~V~~i~~~~g- 363 (704)
. ....+ ...+...... ....++....+ ..+.+.|.+.+.+.| ++++++++++++..+++
T Consensus 111 ~~~~~~i--------------~r~~~~~~~~~~~~~~~~~~l~Q-~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~ 175 (634)
T PRK08294 111 PADPSTI--------------VRTGRVQDTEDGLSEFPHVIVNQ-ARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEG 175 (634)
T ss_pred Cccccce--------------eccccccccCCCCCCCccEeeCH-HHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCC
Confidence 0 00000 0000000000 00111111111 236677888888776 47899999999987642
Q ss_pred -EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccc
Q 005273 364 -RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVP 413 (704)
Q Consensus 364 -~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~ 413 (704)
.-+.|++.+.++..+++.++++||.||.|+|..|.. .+..|+++..
T Consensus 176 ~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V----R~~lgi~~~G 222 (634)
T PRK08294 176 EYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV----RKAIGRELRG 222 (634)
T ss_pred CCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH----HHhcCCCccC
Confidence 223355554211111223589999999999999842 3345665543
No 176
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.1e-06 Score=94.29 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
..+..++.+-+++.|.+|.++..|.+|+.++|+++||++.++ +++.++.||--++.|
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG--------~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADG--------TEVRSKIVVSNATPW 320 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCC--------cEEEeeeeecCCchH
Confidence 357889999999999999999999999999999999999998 578888888777665
No 177
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.70 E-value=1.9e-07 Score=105.38 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEe-CCEEEEEEEc-CCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHh
Q 005273 330 RLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIE-NARIVGVKVS-DSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVS 406 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~-~g~v~GV~~~-~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~ 406 (704)
....+.+.|.+.+.+. |++++++++|+++..+ ++.+. +.+. ...+ +..++.||.||+|+|+|+..+ ++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g----~~~~i~Ad~VV~AAGawS~~L---a~~ 253 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTG----EKREQVADYVFIGAGGGAIPL---LQK 253 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCC----ceEEEEcCEEEECCCcchHHH---HHH
Confidence 3445788898888654 8999999999999876 55443 4332 1111 012589999999999999644 444
Q ss_pred CCCc
Q 005273 407 HNIN 410 (704)
Q Consensus 407 ~gi~ 410 (704)
.|++
T Consensus 254 ~Gi~ 257 (497)
T PRK13339 254 SGIP 257 (497)
T ss_pred cCCC
Confidence 5544
No 178
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.70 E-value=1.2e-07 Score=99.30 Aligned_cols=113 Identities=22% Similarity=0.254 Sum_probs=74.8
Q ss_pred cCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHH
Q 005273 326 LGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLV 405 (704)
Q Consensus 326 ~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~ 405 (704)
++..--.++.+.+++.|.+.|++|+++|+|.......+...-|.+.+..++ +.+++++|.+++|+|..+-.--.-++
T Consensus 246 i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~---k~~tle~DvlLVsiGRrP~t~GLgle 322 (506)
T KOG1335|consen 246 IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTG---KKETLECDVLLVSIGRRPFTEGLGLE 322 (506)
T ss_pred hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCC---ceeEEEeeEEEEEccCcccccCCChh
Confidence 333333468889999999999999999999999887664556777765443 35789999999999987632111222
Q ss_pred hCCCcc---------------cccceeeEEEEecchhhhcccccccchhhh
Q 005273 406 SHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELATEV 441 (704)
Q Consensus 406 ~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~~e~ 441 (704)
..|+.. .|..|++|+.+..|+....+...+..+.|.
T Consensus 323 ~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~ 373 (506)
T KOG1335|consen 323 KIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEG 373 (506)
T ss_pred hcccccccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheee
Confidence 333332 255677787777776655554444333333
No 179
>PRK07538 hypothetical protein; Provisional
Probab=98.69 E-value=1.5e-07 Score=104.77 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=33.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
+||+||||||+||++|+.|++.|++|+|+|+.+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 479999999999999999999999999999987653
No 180
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.69 E-value=6.6e-08 Score=108.85 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
.+||+||||||+|++||..|++.|++|+|+|+. .+|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG 38 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGG 38 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccc
Confidence 589999999999999999999999999999996 4554
No 181
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.67 E-value=3.7e-07 Score=103.52 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCC
Q 005273 330 RLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHN 408 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~g 408 (704)
....+.+.|.+.+++.| ++++++++|+++..+++..+.|.+.+... ++..++.|+.||+|+|+|+..+ ++..|
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~---G~~~~i~A~~VVvaAGg~s~~L---~~~~G 254 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKT---GEKRTVRAKFVFIGAGGGALPL---LQKSG 254 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCC---CceEEEEcCEEEECCCcchHHH---HHHcC
Confidence 34568899999999887 89999999999987554323344432110 0113689999999999998644 44555
Q ss_pred Cc
Q 005273 409 IN 410 (704)
Q Consensus 409 i~ 410 (704)
++
T Consensus 255 i~ 256 (494)
T PRK05257 255 IP 256 (494)
T ss_pred CC
Confidence 54
No 182
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.66 E-value=1.4e-07 Score=106.89 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+||+||||||+|+.||..|++.|++|+|+|+.+.+|+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~ 42 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV 42 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc
Confidence 589999999999999999999999999999998666654
No 183
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.65 E-value=2.3e-07 Score=104.15 Aligned_cols=69 Identities=25% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCC---CEEEeCeEEEEEEEe------CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHH
Q 005273 333 PLLRNFRQHLQRLG---VTIKFGTRVDDLLIE------NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEM 403 (704)
Q Consensus 333 ~l~~~L~~~l~~~G---v~i~~~t~V~~i~~~------~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~ 403 (704)
.+.+.|.+.+.+.+ ++++++++|+++..+ ++..+.|.+.++ ++++||.||.|+|.+|..
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g--------~~i~a~llVgADG~~S~v---- 185 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDG--------QVLYTKLLIGADGSNSNV---- 185 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCC--------CEEEeeEEEEecCCCChh----
Confidence 46778888888775 999999999999753 122234555544 479999999999999852
Q ss_pred HHhCCCcccc
Q 005273 404 LVSHNINLVP 413 (704)
Q Consensus 404 l~~~gi~l~~ 413 (704)
.+..+++...
T Consensus 186 R~~~gi~~~g 195 (437)
T TIGR01989 186 RKAANIDTTG 195 (437)
T ss_pred HHHcCCCccc
Confidence 2344555443
No 184
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.64 E-value=1.5e-07 Score=105.90 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=34.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
++||+||||||+|++||+.++++|++|+|+|+. .+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~ 39 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGT 39 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCce
Confidence 489999999999999999999999999999995 55553
No 185
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.64 E-value=2.3e-07 Score=105.39 Aligned_cols=58 Identities=26% Similarity=0.412 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCC
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
....++++|.+.+++.|++|+++++|++|..++++.+++...++ ..+.+|.||.+...
T Consensus 222 G~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g--------~~~~ad~vv~~~~~ 279 (487)
T COG1233 222 GMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG--------ENIEADAVVSNADP 279 (487)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecccc--------ceeccceeEecCch
Confidence 44569999999999999999999999999999998666665554 36899999988776
No 186
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.63 E-value=2.8e-07 Score=103.78 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=78.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||||+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~----------------------------------------- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS----------------------------------------- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------------------------------------
Confidence 579999999999999999999999999999998654100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|+++++++.|+++..+++....+.+.++
T Consensus 205 -------------------------------~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g----- 248 (450)
T TIGR01421 205 -------------------------------FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG----- 248 (450)
T ss_pred -------------------------------cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC-----
Confidence 00135567778888999999999999999765433234555443
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
...+.+|.||+|+|..++.
T Consensus 249 --~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 249 --KSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred --cEEEEcCEEEEeeCCCcCc
Confidence 1368999999999998764
No 187
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.63 E-value=2.4e-07 Score=104.73 Aligned_cols=142 Identities=22% Similarity=0.265 Sum_probs=96.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.+++|+|||+|+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------- 213 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF---------------------------------------- 213 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc----------------------------------------
Confidence 3579999999999999999999999999999998653100
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
....+...+.+.+++.|+++++++.|+++..+++.+ .+.+.++
T Consensus 214 --------------------------------~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~-~v~~~~g---- 256 (461)
T PRK05249 214 --------------------------------LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGV-IVHLKSG---- 256 (461)
T ss_pred --------------------------------CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeE-EEEECCC----
Confidence 001356677788888999999999999997665543 2444433
Q ss_pred CCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhcccccccchhh
Q 005273 378 QSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELATE 440 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~~e 440 (704)
..+.+|.||+|+|..++.-...+...++.+ .|..|++|+....|.........+..++.
T Consensus 257 ----~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ 330 (461)
T PRK05249 257 ----KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQ 330 (461)
T ss_pred ----CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHH
Confidence 368999999999998764211122222222 25578888877655433333333333333
No 188
>PRK10262 thioredoxin reductase; Provisional
Probab=98.63 E-value=5.3e-07 Score=96.89 Aligned_cols=115 Identities=22% Similarity=0.330 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...+||+|||||||||+||..|+++|++|+++|+.. .++.... .. .+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~--------------------------~~-~~----- 50 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTT--------------------------TT-EV----- 50 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceec--------------------------Cc-eE-----
Confidence 346899999999999999999999999999999653 3321000 00 00
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
++.| +.+ .......+.+.+.+.+...+++++.+ +|..+...++.+ .+....
T Consensus 51 ---------------~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~-~v~~~~---- 101 (321)
T PRK10262 51 ---------------ENWP------GDP--NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPF-RLTGDS---- 101 (321)
T ss_pred ---------------CCCC------CCC--CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeE-EEEecC----
Confidence 0000 000 00112246677788888888888776 566676655532 222221
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.||+|||.+++
T Consensus 102 -----~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 102 -----GEYTCDALIIATGASAR 118 (321)
T ss_pred -----CEEEECEEEECCCCCCC
Confidence 25899999999999763
No 189
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=3.3e-07 Score=103.74 Aligned_cols=149 Identities=25% Similarity=0.314 Sum_probs=96.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+|+.+.+...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------- 210 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN----------------------------------------- 210 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-----------------------------------------
Confidence 469999999999999999999999999999987643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ..++...+.+.+++.||+++++++|+++..+++.+ .+.+.+.++
T Consensus 211 -----------------------------~--d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g--- 255 (466)
T PRK07818 211 -----------------------------E--DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKV-TVTVSKKDG--- 255 (466)
T ss_pred -----------------------------c--CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeE-EEEEEecCC---
Confidence 0 01355677788889999999999999997655433 344431111
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhcccccccchhhhcc
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELATEVQK 443 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~~e~~~ 443 (704)
+..++.+|.||+|+|..++.....+...++.+ .|..|++|+....+.........+..++..+.
T Consensus 256 -~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 256 -KAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred -CeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHc
Confidence 12469999999999988764211122223222 14568888776544333333333444444333
Q ss_pred c
Q 005273 444 G 444 (704)
Q Consensus 444 g 444 (704)
|
T Consensus 335 g 335 (466)
T PRK07818 335 G 335 (466)
T ss_pred C
Confidence 3
No 190
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=3.9e-07 Score=103.08 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=34.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+||+||||||+|++||..|+++|++|+|+|+.. +|+.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~ 41 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGT 41 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccc
Confidence 5899999999999999999999999999999976 5543
No 191
>PRK09897 hypothetical protein; Provisional
Probab=98.62 E-value=8.8e-07 Score=100.88 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=85.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccc-cchhHHHHHHhhccc-cccccccCCcccccCcchhhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRG-RDIGALVVRRMLEME-SNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~-~~~~~~~~~~~l~~~-~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
++|+||||||+|+++|..|++.+ .+|+|||++..+|... ..... ....++.. .+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~--~~~~L~~N~~~~~~----------------- 62 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEE--NSKMMLANIASIEI----------------- 62 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCC--ChHHHHhccccccc-----------------
Confidence 58999999999999999998865 4899999988776321 00000 00000000 00000
Q ss_pred ccCchhHHHHHH-----HHHHcCCCceeecCCccccCCC---ChHHHHHHHHHHHHHCC--CEEEeCeEEEEEEEeCCEE
Q 005273 296 GRNSNSVLAVMN-----TLVHFGAPANILVDGKSHLGTD---RLIPLLRNFRQHLQRLG--VTIKFGTRVDDLLIENARI 365 (704)
Q Consensus 296 ~~~~~~~~~~l~-----~l~~~G~~~~~~~~g~~~~g~~---~~~~l~~~L~~~l~~~G--v~i~~~t~V~~i~~~~g~v 365 (704)
........+|+. ++.+.+.+...+..+...+... .+..+.+.+.+.+.+.| ++++.+++|+++..+++.+
T Consensus 63 p~~~~~f~~Wl~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~ 142 (534)
T PRK09897 63 PPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGV 142 (534)
T ss_pred CCChHHHHHHhhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEE
Confidence 000011111211 2334455443332222222222 23445566666677777 7888899999998877653
Q ss_pred EEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 366 VGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 366 ~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.|.+.++. ..+.+|.||+|+|+..
T Consensus 143 -~V~t~~gg-------~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 143 -MLATNQDL-------PSETFDLAVIATGHVW 166 (534)
T ss_pred -EEEECCCC-------eEEEcCEEEECCCCCC
Confidence 34443321 3689999999999864
No 192
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.62 E-value=5.7e-08 Score=109.30 Aligned_cols=39 Identities=36% Similarity=0.512 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHH--cCCcEEEEEeCcccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAE--LGADVTLIERGQAVE 255 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~--~g~~v~l~e~~~~~~ 255 (704)
..+++|+|||+|||||+||..|++ .|++|+|||+.+.++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 446899999999999999999987 799999999998765
No 193
>PRK06116 glutathione reductase; Validated
Probab=98.62 E-value=3e-07 Score=103.59 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=78.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+++++++.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 204 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------ 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence 57999999999999999999999999999998764310
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
.....+.+.+.+.+++.|++++++++|.++..+++....+.+.++
T Consensus 205 ------------------------------~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g----- 249 (450)
T PRK06116 205 ------------------------------GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG----- 249 (450)
T ss_pred ------------------------------ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC-----
Confidence 000135567778888999999999999999765443233555443
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+.+|.||+|+|..++.
T Consensus 250 ---~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 250 ---ETLTVDCLIWAIGREPNT 267 (450)
T ss_pred ---cEEEeCEEEEeeCCCcCC
Confidence 368999999999987754
No 194
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=2.8e-07 Score=104.22 Aligned_cols=144 Identities=23% Similarity=0.291 Sum_probs=96.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..|++.|.+|+|+++.+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------------------------------- 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----------------------------------------
Confidence 478999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.|++++++++|+++..+++.+ .+.+.++.
T Consensus 211 -------------------------------~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v-~v~~~~gg---- 254 (462)
T PRK06416 211 -------------------------------EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGV-TVTLEDGG---- 254 (462)
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEE-EEEEEeCC----
Confidence 001355667788889999999999999998766543 24443321
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc--------------cccceeeEEEEecchhhhcccccccchhh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL--------------VPKDFAVGLRMEHPQELINSIQYSELATE 440 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l--------------~~~~~avG~~~~~p~~~~~~~~~~~l~~e 440 (704)
+...+.+|.||+|+|..++....-+...++.+ .|..|++|+....|.........+..++.
T Consensus 255 -~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ 329 (462)
T PRK06416 255 -KEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAE 329 (462)
T ss_pred -eeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHH
Confidence 12468999999999988754211122222221 25578888876544433333333433333
No 195
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.61 E-value=1.2e-06 Score=99.91 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
...+++.|.+.++++|++|+++++|++|..+++++.+|++.++ ..+.||.||+|+|.+.
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g--------~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADG--------EKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCC--------CEEEcCEEEECCChHH
Confidence 4568899999999999999999999999988899999998766 3689999999999864
No 196
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.61 E-value=2.2e-07 Score=106.03 Aligned_cols=143 Identities=25% Similarity=0.348 Sum_probs=78.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNS 299 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~ 299 (704)
++|+|||||++||.+|..|.+.|++|++|||.+.+|+. |... .+.. .+....|.. +.+......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~-------W~~~-----~~~~--~g~~~~y~s--l~~n~sk~~ 65 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL-------WRYT-----ENPE--DGRSSVYDS--LHTNTSKEM 65 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG-------GCHS-----TTCC--CSEGGGSTT---B-SS-GGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc-------CeeC-----CcCC--CCccccccc--eEEeeCchH
Confidence 68999999999999999999999999999999988742 1000 0000 000000000 000000000
Q ss_pred hhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCC--EEEeCeEEEEEEEeCC----EEEEEEEcCC
Q 005273 300 NSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGV--TIKFGTRVDDLLIENA----RIVGVKVSDS 373 (704)
Q Consensus 300 ~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv--~i~~~t~V~~i~~~~g----~v~GV~~~~~ 373 (704)
-.+.++ |. ....|. --....+.++|...++..++ .|++||+|+++...++ .-+.|++.+.
T Consensus 66 -------~~fsdf--p~---p~~~p~--f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~ 131 (531)
T PF00743_consen 66 -------MAFSDF--PF---PEDYPD--FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND 131 (531)
T ss_dssp -------SCCTTS---H---CCCCSS--SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT
T ss_pred -------hcCCCc--CC---CCCCCC--CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC
Confidence 000000 10 011110 01224688889998888776 6999999999987542 1234555432
Q ss_pred CCCCCCceeEEecCeEEEcCCCCh
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
. +..+-.+|+||+|+|++.
T Consensus 132 g-----~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 132 G-----KEETEEFDAVVVATGHFS 150 (531)
T ss_dssp T-----EEEEEEECEEEEEE-SSS
T ss_pred C-----eEEEEEeCeEEEcCCCcC
Confidence 1 234556899999999976
No 197
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.61 E-value=3e-07 Score=103.88 Aligned_cols=143 Identities=22% Similarity=0.283 Sum_probs=95.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..|++.|.+|+|+|+.+.+...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG----------------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-----------------------------------------
Confidence 478999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|++++++++|.++..+++.+. +...++.
T Consensus 209 -------------------------------~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~---- 252 (461)
T TIGR01350 209 -------------------------------EDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YENKGGE---- 252 (461)
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEeCCc----
Confidence 0012456677888889999999999999987666543 4433331
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhcccccccchhh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELATE 440 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~~e 440 (704)
...+.+|.||+|+|..++.....++..++.+ .+..|++|.....+.........+..++.
T Consensus 253 --~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~ 327 (461)
T TIGR01350 253 --TETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAE 327 (461)
T ss_pred --EEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 1468999999999998753211122222221 24577788776544433333333333333
No 198
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.61 E-value=1.3e-07 Score=106.99 Aligned_cols=39 Identities=36% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+||+||||||+|+.||+.|++.|++|+|+|+...+|+.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 589999999999999999999999999999998777654
No 199
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=3.7e-07 Score=101.33 Aligned_cols=137 Identities=23% Similarity=0.306 Sum_probs=84.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCc--------c
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDG--------K 290 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg--------~ 290 (704)
.++|+|||||||||.+|..|.+.|++|+++||.+.+|+- |... .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl----------------------------W~y~~~~~~~~ss 57 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL----------------------------WKYTENVEVVHSS 57 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce----------------------------EeecCcccccccc
Confidence 579999999999999999999999999999999988641 1110 0
Q ss_pred hhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCC--EEEeCeEEEEEEEeC-CEEEE
Q 005273 291 LVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGV--TIKFGTRVDDLLIEN-ARIVG 367 (704)
Q Consensus 291 l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv--~i~~~t~V~~i~~~~-g~v~G 367 (704)
++..+.-+.. .+ .+.--..|+.... ...+ .....++++|...++..++ .|+++++|..+...+ |++ .
T Consensus 58 ~Y~~l~tn~p--Ke---~~~~~dfpf~~~~-~~~~---p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~ 127 (448)
T KOG1399|consen 58 VYKSLRTNLP--KE---MMGYSDFPFPERD-PRYF---PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-R 127 (448)
T ss_pred hhhhhhccCC--hh---hhcCCCCCCcccC-cccC---CCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-e
Confidence 0000000000 00 0000011111000 0000 1123588888888888775 689999888887766 554 4
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
|...+..++ ....-+|.||+|+|++.
T Consensus 128 V~~~~~~~~----~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 128 VTTKDNGTQ----IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred EEEecCCcc----eeEEEeeEEEEcccCcC
Confidence 555544321 24667899999999984
No 200
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.4e-07 Score=95.43 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=58.0
Q ss_pred hhhcCCCCCCCCeEEEEEEeee---cCceeccCCCCCccccCcCCeeEccccchhhHH---HHHHHHHHHHHHHHHHhhc
Q 005273 609 FDEELPGFISDTGLLHGVETRT---SCPLQIPRNNETCESTSLKGLYPVGEGAGYAGG---IVSAAADGMYAGFAVAKDF 682 (704)
Q Consensus 609 ~~~~~~G~~~~~a~~~Gve~~~---~~p~~i~~~~~tles~~i~GLy~~GE~aG~~GG---i~sA~~~G~~Aa~~i~~~~ 682 (704)
.-+.+||..+++...+||=-|- .||.-++ .+++.++-|+|||+|+++|.-|+ .+++|++|++||+-.....
T Consensus 295 Vf~mIPgLeNAefvRyGvmHRNtfinSP~lL~---~tl~lk~~p~l~fAGQitG~EGYveSaA~Gllag~naa~~~~g~~ 371 (439)
T COG1206 295 VFRMIPGLENAEFVRYGVMHRNTFINSPKLLD---PTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLALGEE 371 (439)
T ss_pred hhhhcCCcchhhhhhccceecccccCChhhhh---HHhhcccCCCcEEeeeeecchhhhHHhhhhHHHhhHHHHHhcCCC
Confidence 3366899999999999987763 2575554 68999999999999999988877 4577888888888777665
Q ss_pred CC
Q 005273 683 GL 684 (704)
Q Consensus 683 ~~ 684 (704)
+.
T Consensus 372 ~~ 373 (439)
T COG1206 372 PL 373 (439)
T ss_pred CC
Confidence 44
No 201
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.58 E-value=3.3e-07 Score=103.93 Aligned_cols=140 Identities=20% Similarity=0.240 Sum_probs=94.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc---CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL---GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~---g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
+++|+|||||+.|+++|..++.. |.+|+|+++.+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence 57899999999999999876554 9999999988754100
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
. ...+.+.+.+.+++.|+++++++.|+++..+++....+.+.++
T Consensus 229 --------------------------------~--d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g-- 272 (486)
T TIGR01423 229 --------------------------------F--DSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG-- 272 (486)
T ss_pred --------------------------------c--CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--
Confidence 0 0135677788889999999999999999765444344555443
Q ss_pred CCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhcccccccch
Q 005273 376 NSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELA 438 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~ 438 (704)
..+.+|.||+|+|..++.....+...++.+ .+..|++|+....+.....+...+..+
T Consensus 273 ------~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~a 344 (486)
T TIGR01423 273 ------KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAF 344 (486)
T ss_pred ------CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 369999999999988764221122222222 145788888776554333333333333
No 202
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.58 E-value=1.1e-06 Score=96.66 Aligned_cols=124 Identities=21% Similarity=0.327 Sum_probs=89.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|+.|+++|..|++.|.+|+++++.+.+..+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 180 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL---------------------------------------- 180 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh----------------------------------------
Confidence 5789999999999999999999999999999886531000
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.|++++++++|.++..+++. ..+.+.++
T Consensus 181 -------------------------------~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g----- 223 (377)
T PRK04965 181 -------------------------------MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDSG----- 223 (377)
T ss_pred -------------------------------CCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE-EEEEEcCC-----
Confidence 00124456777888899999999999998765543 34555554
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc-------------cccceeeEEEEec
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL-------------VPKDFAVGLRMEH 424 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l-------------~~~~~avG~~~~~ 424 (704)
.++.+|.||+|+|..++. .+++..++.. .+..|++|+....
T Consensus 224 ---~~i~~D~vI~a~G~~p~~--~l~~~~gl~~~~gi~vd~~l~ts~~~VyA~GD~a~~ 277 (377)
T PRK04965 224 ---RSIEVDAVIAAAGLRPNT--ALARRAGLAVNRGIVVDSYLQTSAPDIYALGDCAEI 277 (377)
T ss_pred ---cEEECCEEEECcCCCcch--HHHHHCCCCcCCCEEECCCcccCCCCEEEeeecEeE
Confidence 479999999999998764 2334444432 1446777766553
No 203
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.57 E-value=1e-06 Score=97.60 Aligned_cols=123 Identities=27% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|+.|+++|..|++.|.+|+|+++.+.+..+.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN---------------------------------------- 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence 5789999999999999999999999999999986542100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.||++++++.|+++.. ++. ..+.+.++
T Consensus 184 -------------------------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g----- 225 (396)
T PRK09754 184 -------------------------------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEK-VELTLQSG----- 225 (396)
T ss_pred -------------------------------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCE-EEEEECCC-----
Confidence 0012445677788889999999999999865 333 34555554
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc-------------cccceeeEEEEec
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL-------------VPKDFAVGLRMEH 424 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l-------------~~~~~avG~~~~~ 424 (704)
..+.+|.||+|+|..++.. +++..++.. .+..|++|+....
T Consensus 226 ---~~i~aD~Vv~a~G~~pn~~--l~~~~gl~~~~gi~vd~~~~ts~~~IyA~GD~a~~ 279 (396)
T PRK09754 226 ---ETLQADVVIYGIGISANDQ--LAREANLDTANGIVIDEACRTCDPAIFAGGDVAIT 279 (396)
T ss_pred ---CEEECCEEEECCCCChhhH--HHHhcCCCcCCCEEECCCCccCCCCEEEccceEee
Confidence 3689999999999988742 334444322 1346777776643
No 204
>PRK06116 glutathione reductase; Validated
Probab=98.56 E-value=2.9e-07 Score=103.73 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
.+||+||||||+|++||..|+++|++|+|+|+. .+|+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhh
Confidence 589999999999999999999999999999986 4554
No 205
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=3.2e-07 Score=104.02 Aligned_cols=39 Identities=28% Similarity=0.676 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
..+||+||||||+|++||..|++.|++|+|+|+. .+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~ 41 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGT 41 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcc
Confidence 3689999999999999999999999999999996 55554
No 206
>PRK06370 mercuric reductase; Validated
Probab=98.56 E-value=2.6e-07 Score=104.51 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.+||+|||+||+|++||+.|++.|++|+|+|+..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 5899999999999999999999999999999874
No 207
>PRK07233 hypothetical protein; Provisional
Probab=98.56 E-value=1.7e-06 Score=96.69 Aligned_cols=56 Identities=29% Similarity=0.513 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCC
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
...+.+.|.+.+++.|++|+++++|++|..+++++.++.. ++ ..+.+|.||+|+..
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~-~~--------~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEV-DG--------EEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEe-CC--------ceEECCEEEECCCH
Confidence 4468899999999999999999999999988877665553 22 36899999999975
No 208
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=4.3e-07 Score=102.55 Aligned_cols=101 Identities=23% Similarity=0.310 Sum_probs=76.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++++|||+|++|+++|..+++.|.+|+|+++.+.+...
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~----------------------------------------- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG----------------------------------------- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-----------------------------------------
Confidence 468999999999999999999999999999988653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
...++.+.+.+.+++.|++++++++|+++..++.. +.+.+..
T Consensus 209 -------------------------------~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~---v~~~~~g---- 250 (458)
T PRK06912 209 -------------------------------EDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQ---ALFEYEG---- 250 (458)
T ss_pred -------------------------------ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCE---EEEEECC----
Confidence 00135667778888999999999999998755442 2232211
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
....+.+|.||+|+|..++.
T Consensus 251 -~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 251 -SIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -ceEEEEeCEEEEecCCccCC
Confidence 12468999999999988753
No 209
>PRK06370 mercuric reductase; Validated
Probab=98.56 E-value=5.3e-07 Score=101.98 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=77.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence 579999999999999999999999999999998654100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|++++++++|.++..+++.+ .+.+....+
T Consensus 210 -------------------------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~--- 254 (463)
T PRK06370 210 -------------------------------EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGI-AVGLDCNGG--- 254 (463)
T ss_pred -------------------------------cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEEeCCC---
Confidence 001245667778888999999999999997655433 333322111
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
...+.+|.||+|+|..++.
T Consensus 255 --~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 255 --APEITGSHILVAVGRVPNT 273 (463)
T ss_pred --ceEEEeCEEEECcCCCcCC
Confidence 1469999999999988764
No 210
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.55 E-value=3.5e-08 Score=106.74 Aligned_cols=117 Identities=21% Similarity=0.152 Sum_probs=90.7
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcc-cccccccccceEee---cccccCCCCCCCCcccchHHHHHHHHHHcCCC
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVL-NDVNNKFEGFWRLS---KLAVPVHKDPGKDFIGVSHALLDEITKVLQFP 112 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~g~~~~~---~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ip 112 (704)
++|-. +...++-.+.|...+.++.++++ +|++++|.|++... ....|.... ..+++.++++.||+.+++|
T Consensus 212 ~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ik~~~~ip 287 (343)
T cd04734 212 GIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGM----PPGPFLPLAARIKQAVDLP 287 (343)
T ss_pred EEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCC----CcchhHHHHHHHHHHcCCC
Confidence 66744 44445567788899999999997 89999999976532 112232222 2577889999999999999
Q ss_pred CCC---C-ChhhHHHHHhcc-cc----cccccCCCeEEEEEEEeeccccccCCchhhhhhcc
Q 005273 113 VAS---M-LPAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRL 165 (704)
Q Consensus 113 v~~---~-~p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~ 165 (704)
|+. + +|+.++++++.+ +| +|..|+||+|++|+..+..++ +++|++|+
T Consensus 288 vi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~~~~------i~~C~~C~ 343 (343)
T cd04734 288 VFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGREDD------IRPCIGCN 343 (343)
T ss_pred EEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCCccC------cCcCcCCC
Confidence 963 5 499999999766 99 999999999999999998643 78888874
No 211
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.55 E-value=5.4e-07 Score=100.37 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=32.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcccc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVE 255 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~ 255 (704)
+|+|||||++||++|+.|++.|+ +|+|+||.+...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 79999999999999999999984 999999987654
No 212
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=4.9e-07 Score=102.56 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=78.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||||++|+++|..|++.|.+|+|+++++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~----------------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT----------------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----------------------------------------
Confidence 479999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE-eCCEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI-ENARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~-~~g~v~GV~~~~~~~~~ 377 (704)
....+.+.+.+.+++.|++++++++|+++.. +++++..+...+++
T Consensus 219 -------------------------------~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~--- 264 (472)
T PRK05976 219 -------------------------------EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGE--- 264 (472)
T ss_pred -------------------------------CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCc---
Confidence 0013556677788899999999999999875 24444444444432
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
...+.+|.||+|+|..++.
T Consensus 265 ---~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 265 ---EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ---eEEEEeCEEEEeeCCccCC
Confidence 2469999999999998753
No 213
>PRK06996 hypothetical protein; Provisional
Probab=98.54 E-value=7.5e-07 Score=98.73 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
..+.+.|.+.+.+.|++++++++++++..+++.+. +.+.++++. .+++||.||.|+|..
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~-v~~~~~~g~-----~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT-LALGTPQGA-----RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE-EEECCCCcc-----eEEeeeEEEECCCCC
Confidence 35788899999999999999999999876655442 445443221 479999999999963
No 214
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=7.3e-07 Score=101.17 Aligned_cols=104 Identities=24% Similarity=0.402 Sum_probs=79.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 221 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------------------------------------- 221 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----------------------------------------
Confidence 579999999999999999999999999999998643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ...+...+.+.+++.|++++++++|+++..+++.+ .+.+.++++
T Consensus 222 -----------------------------~--d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v-~v~~~~~~g--- 266 (475)
T PRK06327 222 -----------------------------A--DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGV-SVAYTDADG--- 266 (475)
T ss_pred -----------------------------C--CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEE-EEEEEeCCC---
Confidence 0 01355667778888999999999999997665544 344444321
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+...+.+|.||+|+|..++.
T Consensus 267 -~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 267 -EAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -ceeEEEcCEEEEccCCccCC
Confidence 12469999999999988764
No 215
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.53 E-value=7.8e-07 Score=100.00 Aligned_cols=99 Identities=22% Similarity=0.380 Sum_probs=76.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++++.+...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 196 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR----------------------------------------- 196 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-----------------------------------------
Confidence 468999999999999999999999999999997643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ...+...+.+.+++.|++++++++|+++..+++.+ .+...++
T Consensus 197 -----------------------------~--~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v-~v~~~~g----- 239 (441)
T PRK08010 197 -----------------------------E--DRDIADNIATILRDQGVDIILNAHVERISHHENQV-QVHSEHA----- 239 (441)
T ss_pred -----------------------------c--CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEcCC-----
Confidence 0 01355677788899999999999999997665543 2332222
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.+.+|.||+|+|..++.
T Consensus 240 ----~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 240 ----QLAVDALLIASGRQPAT 256 (441)
T ss_pred ----eEEeCEEEEeecCCcCC
Confidence 48899999999998864
No 216
>PTZ00367 squalene epoxidase; Provisional
Probab=98.53 E-value=7.6e-07 Score=102.40 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
..+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 217
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.53 E-value=1.5e-06 Score=97.64 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=88.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..|.+.|.+|+++++.+.+...
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 187 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------------------------------------- 187 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch-----------------------------------------
Confidence 578999999999999999999999999999987543100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
.....+.+.+.+.+++.|++++++++|+++.. ++++..+.+.++
T Consensus 188 ------------------------------~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~----- 231 (444)
T PRK09564 188 ------------------------------SFDKEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKG----- 231 (444)
T ss_pred ------------------------------hcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCC-----
Confidence 00013567778888999999999999999854 455555554432
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEec
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEH 424 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~ 424 (704)
.+.+|.||+|+|..++. .+++..++.+ .+..|++|+....
T Consensus 232 ----~i~~d~vi~a~G~~p~~--~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~ 286 (444)
T PRK09564 232 ----EYEADVVIVATGVKPNT--EFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATI 286 (444)
T ss_pred ----EEEcCEEEECcCCCcCH--HHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEE
Confidence 58999999999988753 2234333322 1457888887653
No 218
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.52 E-value=7.1e-07 Score=101.02 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++++|||+|+.|+++|..|++.|.+|+++++.+.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 215 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------------------------------------- 215 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------------------------------------
Confidence 468999999999999999999999999999987653110
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.||+++++++|+++..+++.+. +.+.++
T Consensus 216 -------------------------------~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~g----- 258 (466)
T PRK07845 216 -------------------------------EDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVV-VTLTDG----- 258 (466)
T ss_pred -------------------------------CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEECCC-----
Confidence 0012456677888899999999999999976655432 444433
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+.+|.||+|+|..++.
T Consensus 259 ---~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 259 ---RTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---cEEEecEEEEeecCCcCC
Confidence 368999999999988764
No 219
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1e-06 Score=99.81 Aligned_cols=106 Identities=22% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.+++|+|||+|+.|+++|..+++.|.+|+|+|+.+.+...
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~---------------------------------------- 212 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG---------------------------------------- 212 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC----------------------------------------
Confidence 3579999999999999999999999999999987653100
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
. ...+...+.+.+++.||++++++.|+++..+++.+ .+.+.+..+
T Consensus 213 ------------------------------~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~-- 257 (466)
T PRK06115 213 ------------------------------T--DTETAKTLQKALTKQGMKFKLGSKVTGATAGADGV-SLTLEPAAG-- 257 (466)
T ss_pred ------------------------------C--CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeE-EEEEEEcCC--
Confidence 0 01245667788889999999999999997654443 233331110
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++...+.+|.||+|+|..++.
T Consensus 258 -g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 258 -GAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -CceeEEEeCEEEEccCCcccc
Confidence 012469999999999988753
No 220
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.51 E-value=7.9e-07 Score=100.61 Aligned_cols=103 Identities=19% Similarity=0.343 Sum_probs=77.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..|++.|.+|+|+++.+.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 204 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR----------------------------------------- 204 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------------------------------------
Confidence 478999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ...+...+.+.+++.||+++++++|+++..+++. ..+.+...++
T Consensus 205 -----------------------------~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~--- 249 (463)
T TIGR02053 205 -----------------------------E--EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG-KIITVEKPGG--- 249 (463)
T ss_pred -----------------------------c--CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE-EEEEEEeCCC---
Confidence 0 0124566777888899999999999999765543 3344432111
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..++.+|.||+|+|..++.
T Consensus 250 --~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 250 --QGEVEADELLVATGRRPNT 268 (463)
T ss_pred --ceEEEeCEEEEeECCCcCC
Confidence 1479999999999987753
No 221
>PRK14727 putative mercuric reductase; Provisional
Probab=98.51 E-value=8.3e-07 Score=100.82 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=92.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++...+..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~------------------------------------------ 225 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR------------------------------------------ 225 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc------------------------------------------
Confidence 47899999999999999999999999999987532100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|++++++++|+++..+++.+ .+...+
T Consensus 226 -------------------------------~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~------ 267 (479)
T PRK14727 226 -------------------------------EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGF-VLTTGH------ 267 (479)
T ss_pred -------------------------------chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEE-EEEEcC------
Confidence 001255677788889999999999999997665532 233322
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCc--------c-------cccceeeEEEEecchhhhcccccccchh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNIN--------L-------VPKDFAVGLRMEHPQELINSIQYSELAT 439 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~--------l-------~~~~~avG~~~~~p~~~~~~~~~~~l~~ 439 (704)
.++.+|.||+|+|..++.....++..++. + .+..|++|+....|.....+...+..++
T Consensus 268 ---g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa 340 (479)
T PRK14727 268 ---GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAG 340 (479)
T ss_pred ---CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcchhhhHHHHHHHHHH
Confidence 25889999999999886421112222222 1 1457888887766554333333333333
No 222
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=6.3e-07 Score=101.40 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=35.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+||+|||+||+|+.||..+++.|++|+|+|+...+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 489999999999999999999999999999986666654
No 223
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.50 E-value=2.6e-07 Score=91.82 Aligned_cols=115 Identities=28% Similarity=0.507 Sum_probs=71.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCch
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSN 300 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~ 300 (704)
||+|||||+||+.||..|++.|++|+|+|+.+........+... .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~----~------------------------------- 45 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSP----L------------------------------- 45 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHH----H-------------------------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccc----c-------------------------------
Confidence 69999999999999999999999999998775431100000000 0
Q ss_pred hHHHHHHHHHHcCCCceeecCCccccCCCChHHHHH--HHHHHHHHCCCEEEeCeEEEEEEEeCCEEE----EEEE-cCC
Q 005273 301 SVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLR--NFRQHLQRLGVTIKFGTRVDDLLIENARIV----GVKV-SDS 373 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~--~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~----GV~~-~~~ 373 (704)
......... .... .+ .+.+.+...++++++++++.++....+.+. .+.. ...
T Consensus 46 -~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 104 (201)
T PF07992_consen 46 -LVEIAPHRH-------------------EFLP-ARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETG 104 (201)
T ss_dssp -HHHHHHHHH-------------------HHHH-HHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETT
T ss_pred -ccccccccc-------------------cccc-ccccccccccccceEEEeeccccccccccccccccCcccceeeccC
Confidence 000000000 0000 01 455566778999999999999988777531 1211 222
Q ss_pred CCCCCCceeEEecCeEEEcCCCCh
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
...++.+|.||+|||..+
T Consensus 105 ------~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 105 ------DGREIKYDYLVIATGSRP 122 (201)
T ss_dssp ------TEEEEEEEEEEEESTEEE
T ss_pred ------CceEecCCeeeecCcccc
Confidence 136899999999999654
No 224
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=1.1e-06 Score=98.70 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=34.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc-ccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA-VEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~-~~~ 256 (704)
.+||+||||||||++||..|++.|++|+|+|+++. +|+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG 41 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGG 41 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccce
Confidence 48999999999999999999999999999999863 444
No 225
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.50 E-value=7.2e-07 Score=94.57 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEe--CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCC
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIE--NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNI 409 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~--~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi 409 (704)
....|...+...+++|+++++|+.|..+ +++++||++.+..+. .....+.++.||||+|+... ..+|...|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~--~~~~~~~ak~VIlaAGai~T--p~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG--VQRRIVAAKEVILAAGAIGT--PRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS--EEEEEEEEEEEEE-SHHHHH--HHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc--ceeeeccceeEEeccCCCCC--hhhhccccc
Confidence 4455555554459999999999999876 789999999876442 12356788999999997542 234444443
No 226
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.49 E-value=8.3e-07 Score=93.30 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=100.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhcccccccccc---------------C
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGE---------------G 281 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~---------------g 281 (704)
....||+|||+|.+|...|+.|++.|.+|+|+||.-.--. + +..++++++.-..+.+ .
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPd--R-----ivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~ 115 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPD--R-----IVGELLQPGGYLALSKLGLEDCVEGIDAQRVT 115 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccch--H-----HHHHhcCcchhHHHHHhCHHHHhhcccceEee
Confidence 4467999999999999999999999999999999743211 1 1122222211110000 0
Q ss_pred CcccccCcchhhhhccCchhHHHHHHHHHHcCCCceeec-CCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEE
Q 005273 282 GAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILV-DGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLL 359 (704)
Q Consensus 282 G~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~-~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~ 359 (704)
|...|.|++-+. +|+.... ...+..-.-....+++.|++.+... +|++. +..|.+++
T Consensus 116 Gy~ifk~gk~v~--------------------~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~e-eGtV~sLl 174 (509)
T KOG1298|consen 116 GYAIFKDGKEVD--------------------LPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLE-EGTVKSLL 174 (509)
T ss_pred eeEEEeCCceee--------------------ccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEe-eeeHHHHH
Confidence 111112222110 0000000 0000000011124888999988777 56665 45688898
Q ss_pred EeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccccceeeEEEEec
Q 005273 360 IENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVPKDFAVGLRMEH 424 (704)
Q Consensus 360 ~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~~~~avG~~~~~ 424 (704)
.+++.+.||++.+.+++ ..+..|...|+|+|.+++-. ..|-+..++- -..+-+|+..+.
T Consensus 175 ee~gvvkGV~yk~k~ge----e~~~~ApLTvVCDGcfSnlR-rsL~~~~v~~-V~S~fVG~vl~N 233 (509)
T KOG1298|consen 175 EEEGVVKGVTYKNKEGE----EVEAFAPLTVVCDGCFSNLR-RSLCDPKVEE-VPSYFVGLVLKN 233 (509)
T ss_pred hccCeEEeEEEecCCCc----eEEEecceEEEecchhHHHH-HHhcCCcccc-cchheeeeeecC
Confidence 89999999999987654 46788899999999998632 2222222221 124457776654
No 227
>PRK14694 putative mercuric reductase; Provisional
Probab=98.49 E-value=9.9e-07 Score=99.93 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=87.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+++++...+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------------ 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ------------------------------------------ 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC------------------------------------------
Confidence 47999999999999999999999999999987532100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.|+++++++.|.++..+++.+ .+...+
T Consensus 216 -------------------------------~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~-~v~~~~------ 257 (468)
T PRK14694 216 -------------------------------EDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREF-ILETNA------ 257 (468)
T ss_pred -------------------------------CCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEECC------
Confidence 001355677888889999999999999987655432 233322
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCc-------c-------cccceeeEEEEecchhh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNIN-------L-------VPKDFAVGLRMEHPQEL 428 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~-------l-------~~~~~avG~~~~~p~~~ 428 (704)
.++.+|.||+|+|..++.....+...++. + .+..|++|+....|...
T Consensus 258 ---~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~ 318 (468)
T PRK14694 258 ---GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQPQFV 318 (468)
T ss_pred ---CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCcccH
Confidence 25999999999999876422111222221 1 24577888877655443
No 228
>PRK13748 putative mercuric reductase; Provisional
Probab=98.48 E-value=8.4e-07 Score=102.88 Aligned_cols=127 Identities=18% Similarity=0.263 Sum_probs=89.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++...+..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------------------------------------ 307 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR------------------------------------------ 307 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc------------------------------------------
Confidence 57899999999999999999999999999997532100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|+++++++.|+++..+++.+ .+...++
T Consensus 308 -------------------------------~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~-~v~~~~~----- 350 (561)
T PRK13748 308 -------------------------------EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEF-VLTTGHG----- 350 (561)
T ss_pred -------------------------------cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEE-EEEecCC-----
Confidence 001255667788889999999999999997665543 2333222
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQEL 428 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~ 428 (704)
.+.+|.||+|+|..++.....++..++.+ .+..|++|+.+..|...
T Consensus 351 ----~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~ 411 (561)
T PRK13748 351 ----ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFV 411 (561)
T ss_pred ----eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCccch
Confidence 58999999999998764211122333322 14578888877655433
No 229
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.48 E-value=4.3e-06 Score=95.40 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 331 LIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
...+.++|.+.+++.|++|+++++|++|..+++++.+|.+.++..+ ....+.||.||+++-..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~---~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQ---EDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCC---ceEEEECCEEEECCCHH
Confidence 4568899999999999999999999999998888888887654210 11368999999998764
No 230
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.48 E-value=7.1e-07 Score=90.03 Aligned_cols=142 Identities=27% Similarity=0.384 Sum_probs=83.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccCch
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRNSN 300 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~~~ 300 (704)
+|+|||+|++|++||+.|+..|..|+||||+.-+|+|... ..+.. +. |. -|+..|. ....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAt-------RRl~~-g~--~D-hGAqYfk---------~~~~ 62 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLAT-------RRLDG-GR--FD-HGAQYFK---------PRDE 62 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchhe-------eccCC-cc--cc-ccceeec---------CCch
Confidence 6999999999999999999999999999999888765321 11111 00 11 1121221 1112
Q ss_pred hHHHHHHHHHHcCCCcee------e--------cCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEE
Q 005273 301 SVLAVMNTLVHFGAPANI------L--------VDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 301 ~~~~~l~~l~~~G~~~~~------~--------~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
...++++.+.+.|+-..- . .+..|+.+.-....+.+ .+ ....+|+++++|+++-..++ .+
T Consensus 63 ~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak----~L-AtdL~V~~~~rVt~v~~~~~-~W 136 (331)
T COG3380 63 LFLRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAK----FL-ATDLTVVLETRVTEVARTDN-DW 136 (331)
T ss_pred HHHHHHHHHHhCCceeeccccccccccCCCCCCCCCCccccCcchHHHHH----HH-hccchhhhhhhhhhheecCC-ee
Confidence 223333344444432111 0 01112334433333333 32 35678999999999987744 45
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCC
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
.+...++. ....+|.||+|.=.
T Consensus 137 ~l~~~~g~-------~~~~~d~vvla~PA 158 (331)
T COG3380 137 TLHTDDGT-------RHTQFDDVVLAIPA 158 (331)
T ss_pred EEEecCCC-------cccccceEEEecCC
Confidence 56665553 35789999999753
No 231
>PLN02507 glutathione reductase
Probab=98.48 E-value=1e-06 Score=100.44 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|+.|+++|..+++.|.+|+|+++.+.+...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 241 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG----------------------------------------- 241 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-----------------------------------------
Confidence 468999999999999999999999999999987643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.|+++++++.|+++..+++.+ .+.+.++
T Consensus 242 -------------------------------~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~-~v~~~~g----- 284 (499)
T PLN02507 242 -------------------------------FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGI-KVITDHG----- 284 (499)
T ss_pred -------------------------------cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeE-EEEECCC-----
Confidence 001355667778889999999999999997655543 2444332
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.++.+|.||+|+|..++.
T Consensus 285 ---~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 285 ---EEFVADVVLFATGRAPNT 302 (499)
T ss_pred ---cEEEcCEEEEeecCCCCC
Confidence 369999999999988764
No 232
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.48 E-value=1.6e-06 Score=104.11 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=93.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++++|||||+.|+++|..|++.|.+|+|+|+.+.+..+ .
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------~----------------------------- 184 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------Q----------------------------- 184 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------h-----------------------------
Confidence 568999999999999999999999999999987653100 0
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~~~~~ 377 (704)
. .......+.+.++++||++++++.++++..++ +....+.+.++
T Consensus 185 ---------------l----------------d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG---- 229 (847)
T PRK14989 185 ---------------L----------------DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG---- 229 (847)
T ss_pred ---------------c----------------CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC----
Confidence 0 01245667788899999999999999986542 34556666655
Q ss_pred CCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecc
Q 005273 378 QSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHP 425 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p 425 (704)
..+.+|.||+|+|..++.. +++..|+.+ .|..|++|....++
T Consensus 230 ----~~i~~D~Vv~A~G~rPn~~--L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~ 286 (847)
T PRK14989 230 ----SELEVDFIVFSTGIRPQDK--LATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWN 286 (847)
T ss_pred ----CEEEcCEEEECCCcccCch--HHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEc
Confidence 3699999999999988753 344444332 25688999888764
No 233
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.47 E-value=1.4e-06 Score=97.86 Aligned_cols=98 Identities=19% Similarity=0.393 Sum_probs=74.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|++|+++|..|++.|.+|+|+++.+.+..+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------------------------------------- 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence 568999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ...+.+.+.+.+++.|++++++++|+++..+++.+. +. .++
T Consensus 196 -----------------------------~--~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~-v~-~~g----- 237 (438)
T PRK07251 196 -----------------------------E--EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL-VV-TED----- 237 (438)
T ss_pred -----------------------------C--CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE-EE-ECC-----
Confidence 0 012445566778889999999999999976554432 22 222
Q ss_pred CceeEEecCeEEEcCCCChH
Q 005273 379 SDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.++.+|.||+|+|..++
T Consensus 238 ---~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 238 ---ETYRFDALLYATGRKPN 254 (438)
T ss_pred ---eEEEcCEEEEeeCCCCC
Confidence 36899999999999875
No 234
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=1e-06 Score=99.80 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=95.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+|+.+.+...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~----------------------------------------- 212 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA----------------------------------------- 212 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-----------------------------------------
Confidence 479999999999999999999999999999998654100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++. +++++++.|+.+...++.+ .+.+.++++
T Consensus 213 -------------------------------~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~-~v~~~~~~~--- 256 (471)
T PRK06467 213 -------------------------------ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGI-YVTMEGKKA--- 256 (471)
T ss_pred -------------------------------CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEE-EEEEEeCCC---
Confidence 0013556677778778 9999999999997665543 344443321
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhcccccccchh
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSIQYSELAT 439 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~~~~~l~~ 439 (704)
+..++.+|.||+|+|..++.....+...++.+ .|..|++|+.+..|.....+...+..++
T Consensus 257 -~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa 331 (471)
T PRK06467 257 -PAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAA 331 (471)
T ss_pred -cceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHH
Confidence 12469999999999998764221233333322 2457788877655543333333333333
No 235
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.47 E-value=9.1e-07 Score=99.59 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=76.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..+++.|.+|+|+++++.+...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG----------------------------------------- 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-----------------------------------------
Confidence 578999999999999999999999999999987653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.|++++++++|+++..+++.+ .+.+.++
T Consensus 205 -------------------------------~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g----- 247 (446)
T TIGR01424 205 -------------------------------FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGL-KVTLSHG----- 247 (446)
T ss_pred -------------------------------cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeE-EEEEcCC-----
Confidence 001355667778888999999999999997654432 3444333
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.++.+|.||+|+|..++.
T Consensus 248 ---~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 248 ---EEIVADVVLFATGRSPNT 265 (446)
T ss_pred ---cEeecCEEEEeeCCCcCC
Confidence 368999999999988753
No 236
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.46 E-value=6.3e-07 Score=98.52 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=79.1
Q ss_pred cEEEEcCCHHHHHHHHHH--HHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 221 KVAVVGGGPSGLFASLVL--AELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l--~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
||+||||||||+++|+.| ++.|.+|+|+|+.+...-.......++..... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-------------------~-------- 53 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-------------------P-------- 53 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-------------------c--------
Confidence 799999999999999999 88999999999987652110001111100000 0
Q ss_pred chhHHHHHHHHHHcCCCce-eec-------CCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEE
Q 005273 299 SNSVLAVMNTLVHFGAPAN-ILV-------DGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKV 370 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~-~~~-------~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~ 370 (704)
++.+.....+.. +.. ...++ ..-....+.+.+.+++. .+..++.++.|+++...++ ...|++
T Consensus 54 -------~~~~v~~~w~~~~v~~~~~~~~~~~~~Y-~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~-~~~v~~ 123 (374)
T PF05834_consen 54 -------LDSLVSHRWSGWRVYFPDGSRILIDYPY-CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD-GVLVVL 123 (374)
T ss_pred -------hHHHHheecCceEEEeCCCceEEcccce-EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc-eEEEEE
Confidence 001111111100 000 00111 12233457778888888 5556788899999987665 334556
Q ss_pred cCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 371 SDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 371 ~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.++ .+++|+.||.|+|..+
T Consensus 124 ~~g--------~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 124 ADG--------RTIRARVVVDARGPSS 142 (374)
T ss_pred CCC--------CEEEeeEEEECCCccc
Confidence 555 3799999999999655
No 237
>PLN02507 glutathione reductase
Probab=98.46 E-value=1.4e-06 Score=99.40 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~ 250 (704)
...+||+|||+||+|+.||..+++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4468999999999999999999999999999997
No 238
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.46 E-value=1.7e-06 Score=98.83 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
..+.+.|.+.++++|++|++++.|++|..+++++++|++.++ ..+.||.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g--------~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADG--------ERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCC--------CEEECCEEEECCcHH
Confidence 458889999999999999999999999988888889988765 368999999988754
No 239
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=9.4e-07 Score=99.89 Aligned_cols=37 Identities=38% Similarity=0.682 Sum_probs=33.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
+||+||||||+|+.||+.|++.|++|+|+|+ +.+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~ 38 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGT 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCc
Confidence 7999999999999999999999999999999 666653
No 240
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.44 E-value=2.9e-07 Score=102.24 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHH-HHcCCcEEEEEeCccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVL-AELGADVTLIERGQAVEQ 256 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l-~~~g~~v~l~e~~~~~~~ 256 (704)
..+++|+|||||||||+||..| ++.|++|+|+|+.+.+++
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 3467999999999999999976 467999999999998753
No 241
>PTZ00058 glutathione reductase; Provisional
Probab=98.44 E-value=7.7e-07 Score=102.28 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=35.7
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 216 RTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 216 ~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
....+||+||||||+|+.||..+++.|.+|+|+|++ .+|+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt 85 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT 85 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence 335689999999999999999999999999999986 45543
No 242
>PRK07208 hypothetical protein; Provisional
Probab=98.43 E-value=7.2e-06 Score=93.17 Aligned_cols=40 Identities=35% Similarity=0.529 Sum_probs=37.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
.++|+|||||++||+||+.|+++|++|+|+|+.+.+|++.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5789999999999999999999999999999999998863
No 243
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.43 E-value=2.3e-06 Score=102.74 Aligned_cols=126 Identities=27% Similarity=0.378 Sum_probs=93.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||||+.|+++|..|++.|.+|+|+++.+.+..+.
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~---------------------------------------- 179 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ---------------------------------------- 179 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh----------------------------------------
Confidence 5789999999999999999999999999999876431000
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. .......+.+.++++||++++++.++++.. ++.+.+|.+.++
T Consensus 180 ---------------l----------------d~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~~~~v~~~dG----- 222 (785)
T TIGR02374 180 ---------------L----------------DQTAGRLLQRELEQKGLTFLLEKDTVEIVG-ATKADRIRFKDG----- 222 (785)
T ss_pred ---------------c----------------CHHHHHHHHHHHHHcCCEEEeCCceEEEEc-CCceEEEEECCC-----
Confidence 0 012445667788899999999999998864 455677887765
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc-------------cccceeeEEEEecch
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL-------------VPKDFAVGLRMEHPQ 426 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l-------------~~~~~avG~~~~~p~ 426 (704)
..+.+|.||+|+|..++.. ++...++.+ .|..|++|....++.
T Consensus 223 ---~~i~~D~Vi~a~G~~Pn~~--la~~~gl~~~ggI~Vd~~~~Ts~p~IyA~GD~a~~~~ 278 (785)
T TIGR02374 223 ---SSLEADLIVMAAGIRPNDE--LAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEHNG 278 (785)
T ss_pred ---CEEEcCEEEECCCCCcCcH--HHHhcCCccCCCEEECCCcccCCCCEEEeeecceeCC
Confidence 3799999999999987653 333333322 256899998876543
No 244
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.42 E-value=2.4e-06 Score=104.94 Aligned_cols=39 Identities=38% Similarity=0.547 Sum_probs=35.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
..+||+|||||||||+||+.|++.|++|+|+|+.+.+|+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG 200 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG 200 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 357999999999999999999999999999999987653
No 245
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.42 E-value=2.4e-06 Score=95.73 Aligned_cols=135 Identities=25% Similarity=0.326 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
....+|+|||||++||.+|+.|.+.|.. ++||||+..+|+.-... ....+...+ ++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~----ry~~l~~~~--------------p~----- 62 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN----RYPGLRLDS--------------PK----- 62 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc----cCCceEECC--------------ch-----
Confidence 3468999999999999999999999998 99999998876420000 000000000 00
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCC--EEEeCeEEEEEEEeC-CEEEEEEEcC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGV--TIKFGTRVDDLLIEN-ARIVGVKVSD 372 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv--~i~~~t~V~~i~~~~-g~v~GV~~~~ 372 (704)
+ ..+.++.-...... ......+...+...+++++. ++.+++.|.....++ +..+-|++.+
T Consensus 63 ------------~--~~~~~~~p~~~~~~---~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~ 125 (443)
T COG2072 63 ------------W--LLGFPFLPFRWDEA---FAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD 125 (443)
T ss_pred ------------h--eeccCCCccCCccc---CCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC
Confidence 0 00111111100000 11111256777788887775 567777776665554 3466777777
Q ss_pred CCCCCCCceeEEecCeEEEcCCCCh
Q 005273 373 SKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 373 ~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
+... ++.||.||+|||.++
T Consensus 126 ~~~~------~~~a~~vV~ATG~~~ 144 (443)
T COG2072 126 GGTG------ELTADFVVVATGHLS 144 (443)
T ss_pred CCee------eEecCEEEEeecCCC
Confidence 6431 278999999999865
No 246
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.41 E-value=1.6e-06 Score=100.69 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.+..+|+|||||++||++|+.|++.|++|+||||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346799999999999999999999999999999975
No 247
>PLN02546 glutathione reductase
Probab=98.41 E-value=1.6e-06 Score=99.69 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIER 250 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~ 250 (704)
..+||+|||+||+|+.||..+++.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 248
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.41 E-value=1.5e-06 Score=98.45 Aligned_cols=36 Identities=50% Similarity=0.864 Sum_probs=32.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
++|+|||+|++|+.||..++++|++|+|+|++. .|+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG 37 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGG 37 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCC
Confidence 589999999999999999999999999999875 444
No 249
>PRK07846 mycothione reductase; Reviewed
Probab=98.41 E-value=2.1e-06 Score=96.66 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH----------------------------------------- 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 579999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ..++.+.+.+ +.+.|++++++++|+++..+++.+ .+.+.++
T Consensus 205 -----------------------------~--d~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v-~v~~~~g----- 246 (451)
T PRK07846 205 -----------------------------L--DDDISERFTE-LASKRWDVRLGRNVVGVSQDGSGV-TLRLDDG----- 246 (451)
T ss_pred -----------------------------c--CHHHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEE-EEEECCC-----
Confidence 0 0123333333 345689999999999997655533 3444433
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+.+|.||+|+|..++.
T Consensus 247 ---~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 247 ---STVEADVLLVATGRVPNG 264 (451)
T ss_pred ---cEeecCEEEEEECCccCc
Confidence 369999999999998764
No 250
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.41 E-value=4e-06 Score=86.57 Aligned_cols=181 Identities=24% Similarity=0.315 Sum_probs=96.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc--ccccc-cchhHHH-----HHHhhcccccccc---ccCCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA--VEQRG-RDIGALV-----VRRMLEMESNFCF---GEGGAGTWS 287 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~--~~~~~-~~~~~~~-----~~~~l~~~~n~~~---g~gG~~~~s 287 (704)
..||+|||+|.|||.||..||.+|.+|+|+|+... +|++. .++++++ ....+....+..+ .+-|...|.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~FD 84 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAFD 84 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccccC
Confidence 57999999999999999999999999999998754 22221 1111111 0011111111110 011112222
Q ss_pred Ccch--hhhhccCch--hHHHHHHHHHHcCCCceeecC-----C-----c------ccc----CCCChHHHHHHHHHHHH
Q 005273 288 DGKL--VTRIGRNSN--SVLAVMNTLVHFGAPANILVD-----G-----K------SHL----GTDRLIPLLRNFRQHLQ 343 (704)
Q Consensus 288 dg~l--~~~~~~~~~--~~~~~l~~l~~~G~~~~~~~~-----g-----~------~~~----g~~~~~~l~~~L~~~l~ 343 (704)
.++- ...+..... ...+.-+|+.+.|..+.-... + + -|+ |...+.++++.+++..+
T Consensus 85 RPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~~ 164 (552)
T COG3573 85 RPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQR 164 (552)
T ss_pred CccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHHh
Confidence 1110 000000000 001122355555554332210 0 0 122 22334456666666665
Q ss_pred HCCCEEEeCeEEEEEEEeCCEEEEEEEcC---C---CCCC----CCceeEEecCeEEEcCCCChHH
Q 005273 344 RLGVTIKFGTRVDDLLIENARIVGVKVSD---S---KDNS----QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 344 ~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~---~---~~~~----~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+.-+++++.++|..+...+++|+||.-.- . .+.+ .....++.|.+||+++|+-+.+
T Consensus 165 ~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGGn 230 (552)
T COG3573 165 RGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGGN 230 (552)
T ss_pred CCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCCC
Confidence 55699999999999999999999886321 1 1111 1123578999999999987643
No 251
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.40 E-value=2e-06 Score=97.61 Aligned_cols=102 Identities=26% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++++|||||+.|+++|..|++.|.+|+|+++.....
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------------------------------- 216 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------------------------------- 216 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-------------------------------------------
Confidence 4589999999999999999999999999998742110
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
.. ...+.+.+.+.+++.||++++++.+.++...++.+ .|++.++.+
T Consensus 217 ----------------------------~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~-~v~~~~~~~--- 262 (484)
T TIGR01438 217 ----------------------------GF--DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKV-KVTFTDSTN--- 262 (484)
T ss_pred ----------------------------cc--CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEecCCc---
Confidence 00 01355667788889999999999998887655543 355544321
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..++.+|.||+|+|..++.
T Consensus 263 --~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 263 --GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred --ceEEEeCEEEEEecCCcCC
Confidence 1368999999999988764
No 252
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.40 E-value=1.1e-06 Score=100.35 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERG 251 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~ 251 (704)
.+||+||||||+|++||..|++.|++|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 253
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=1.5e-06 Score=98.62 Aligned_cols=32 Identities=41% Similarity=0.659 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIER 250 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~ 250 (704)
.+||+||||||+|+.||+.+++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 58999999999999999999999999999998
No 254
>PLN02546 glutathione reductase
Probab=98.39 E-value=2.3e-06 Score=98.38 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=87.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|+.|++.|..|++.|.+|+|+++.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~----------------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG----------------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence 579999999999999999999999999999987653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+...+.+.+++.||++++++.+.++...++....+...++
T Consensus 291 -------------------------------~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g----- 334 (558)
T PLN02546 291 -------------------------------FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG----- 334 (558)
T ss_pred -------------------------------cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe-----
Confidence 00135567778888999999999999998754333223433221
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCccc---------------ccceeeEEEEecch
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV---------------PKDFAVGLRMEHPQ 426 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~---------------~~~~avG~~~~~p~ 426 (704)
....+|.||+|+|..++.....++..++.+. +..|++|+....+.
T Consensus 335 ---~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~ 394 (558)
T PLN02546 335 ---TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRIN 394 (558)
T ss_pred ---EEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcc
Confidence 2345899999999987642111233333321 34677787765443
No 255
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.38 E-value=1.6e-06 Score=98.46 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEEeC
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAEL-GADVTLIERG 251 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~-g~~v~l~e~~ 251 (704)
+.+||+|||+||+|+.||..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 368999999999999999999997 8999999984
No 256
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.38 E-value=2.6e-06 Score=97.20 Aligned_cols=123 Identities=25% Similarity=0.232 Sum_probs=86.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++++|||+|+.|+++|..|++.|.+|+|+++...+. .
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~----------------------------------------- 219 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-G----------------------------------------- 219 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-c-----------------------------------------
Confidence 4589999999999999999999999999998742210 0
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
....+.+.+.+.+++.||++++++.+.++...++.+ .+.+.++
T Consensus 220 -------------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v~~~~g----- 262 (499)
T PTZ00052 220 -------------------------------FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKI-KVLFSDG----- 262 (499)
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeE-EEEECCC-----
Confidence 001255677788889999999999998887654433 3555443
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc--------------cccceeeEEEEe
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL--------------VPKDFAVGLRME 423 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l--------------~~~~~avG~~~~ 423 (704)
.++.+|.||+|+|..++.....+...++.+ .|..|++|+...
T Consensus 263 ---~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~~Ts~p~IyAiGDv~~ 318 (499)
T PTZ00052 263 ---TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGDVVE 318 (499)
T ss_pred ---CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCCcCCCCCEEEEEEecC
Confidence 358899999999998764221122233222 356788888764
No 257
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=3.6e-06 Score=94.59 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc-ccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA-VEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~-~~~ 256 (704)
.+||+||||||+|++||+.|+++|++|+|+|+++. .|+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG 41 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGG 41 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccce
Confidence 48999999999999999999999999999999753 444
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.36 E-value=5.6e-06 Score=79.37 Aligned_cols=145 Identities=23% Similarity=0.273 Sum_probs=74.0
Q ss_pred EEEcCCHHHHHHHHHHHHc-----CCcEEEEEeCcccc-ccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 223 AVVGGGPSGLFASLVLAEL-----GADVTLIERGQAVE-QRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 223 ~vvG~G~aGl~aA~~l~~~-----g~~v~l~e~~~~~~-~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
+|||+|++|++++..|.+. ..+|+|||+.+. | +...... .....++|..... ...+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~-~~~~~llN~~a~~------~s~~~~-------- 64 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPD-QPPSHLLNTPADQ------MSLFPD-------- 64 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCC-CChHHhhcccccc------cccccc--------
Confidence 5999999999999999887 468999999654 3 1110000 0011122221110 001111
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHH---HCCCEEE-eCeEEEEEEEeCCEEEEEEEcC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQ---RLGVTIK-FGTRVDDLLIENARIVGVKVSD 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~---~~Gv~i~-~~t~V~~i~~~~g~v~GV~~~~ 372 (704)
.. ...+.+|+...+...........++.......+++...+.+. ..|+++. ...+|+++...++.. .|.+.+
T Consensus 65 -~~--~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~~ 140 (156)
T PF13454_consen 65 -DP--GDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTAD 140 (156)
T ss_pred -cC--CCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEECC
Confidence 00 022344555554311001111112222112223332222222 3466553 466899998877653 566665
Q ss_pred CCCCCCCceeEEecCeEEEcCCC
Q 005273 373 SKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 373 ~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
+ ..+.+|.||||+|+
T Consensus 141 g--------~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 G--------QSIRADAVVLATGH 155 (156)
T ss_pred C--------CEEEeCEEEECCCC
Confidence 5 36899999999996
No 259
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=2.5e-06 Score=96.61 Aligned_cols=37 Identities=30% Similarity=0.508 Sum_probs=33.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
.+||+||||||+|+.||..|++.|++|+|+|++ .+|+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG 40 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGG 40 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCC
Confidence 489999999999999999999999999999986 3443
No 260
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.36 E-value=2.6e-06 Score=96.26 Aligned_cols=100 Identities=26% Similarity=0.378 Sum_probs=75.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..|++.|.+|+|+++++.+...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 207 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL----------------------------------------- 207 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence 579999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEE--cCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKV--SDSKDN 376 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~--~~~~~~ 376 (704)
....+.+.+.+.+++. ++++++++|.++..+++ .++++ .+++
T Consensus 208 -------------------------------~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~--~~v~~~~~~~~-- 251 (460)
T PRK06292 208 -------------------------------EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD--EKVEELEKGGK-- 251 (460)
T ss_pred -------------------------------hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC--ceEEEEEcCCc--
Confidence 0013556677788888 99999999999976543 12332 2222
Q ss_pred CCCceeEEecCeEEEcCCCChHH
Q 005273 377 SQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..++.+|.||+|+|..++.
T Consensus 252 ----~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 252 ----TETIEADYVLVATGRRPNT 270 (460)
T ss_pred ----eEEEEeCEEEEccCCccCC
Confidence 2479999999999987764
No 261
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.36 E-value=2e-07 Score=100.70 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=92.5
Q ss_pred eeEee--cc-CCCCCCcchhHHHHHHhhhcc-cccccccccceEeec-ccccCCCCCCCCcccchHHHHHHHHHHcCCCC
Q 005273 39 AIRCA--KR-TGKQRYPSEKKKLKQKHKQVL-NDVNNKFEGFWRLSK-LAVPVHKDPGKDFIGVSHALLDEITKVLQFPV 113 (704)
Q Consensus 39 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv 113 (704)
++|-+ +- .+.+....|...|.+..++.+ +|++|+|.|.+.... +.... .|+...+++.|++.+++|+
T Consensus 220 g~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~--------~~~~~~~a~~i~~~~~~pv 291 (363)
T COG1902 220 GVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG--------PGYQVEFAARIKKAVRIPV 291 (363)
T ss_pred EEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc--------cchhHHHHHHHHHhcCCCE
Confidence 67744 44 334555669999999999999 799999999754311 22111 3788999999999999999
Q ss_pred CC---CC-hhhHHHHHhcc-cc----cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccc
Q 005273 114 AS---ML-PAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVG 170 (704)
Q Consensus 114 ~~---~~-p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (704)
+. +. |+.|+++++.+ +| +|..|+||+|+.|++.+..+. ++.|+.|+..|.+
T Consensus 292 i~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~~~~------~~~~~~~~~~~~~ 351 (363)
T COG1902 292 IAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGRELE------IRPCIYCNQYCLG 351 (363)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCCCcc------ccccccccchhhh
Confidence 74 54 99999999887 88 999999999999999998753 6789988755533
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.35 E-value=3.3e-06 Score=95.24 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++++|||+|+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence 578999999999999999999999999999987643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ..++...+.+ +.+.|+++++++.|+++..+++.+ .+.+.++
T Consensus 208 -----------------------------~--d~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v-~v~~~~g----- 249 (452)
T TIGR03452 208 -----------------------------L--DEDISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGV-TLTLDDG----- 249 (452)
T ss_pred -----------------------------c--CHHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeE-EEEEcCC-----
Confidence 0 0013333433 334689999999999997665543 3444333
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+.+|.||+|+|..++.
T Consensus 250 ---~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 250 ---STVTADVLLVATGRVPNG 267 (452)
T ss_pred ---CEEEcCEEEEeeccCcCC
Confidence 369999999999988764
No 263
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.35 E-value=9.6e-07 Score=89.60 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=97.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcC------CcEEEEEeCccccccccchhHHHHHHhhccc----ccc--------cc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELG------ADVTLIERGQAVEQRGRDIGALVVRRMLEME----SNF--------CF 278 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g------~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~----~n~--------~~ 278 (704)
.+.++|+|||||+.|..+|++|++.+ +.|+|||+....++.+...+++...+..+.- ... ..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHH
Confidence 34589999999999999999999988 7899999998887765444444432222210 000 01
Q ss_pred ccCCcccccCcchhhhhcc-C-----chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCC-CEEEe
Q 005273 279 GEGGAGTWSDGKLVTRIGR-N-----SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLG-VTIKF 351 (704)
Q Consensus 279 g~gG~~~~sdg~l~~~~~~-~-----~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~G-v~i~~ 351 (704)
...|...|....+.+-... . .....+-++|...--+..-....+....+......+.+.+..++++.| |++.+
T Consensus 88 eydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~ 167 (380)
T KOG2852|consen 88 EYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVF 167 (380)
T ss_pred hhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence 1233334433322211000 0 000111122221111110000001011111122347788888887775 99998
Q ss_pred CeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 352 GTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 352 ~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+ .|.++..+.+++.++......+ ......++.+|+|.|.|+..
T Consensus 168 G-kv~ev~dEk~r~n~v~~ae~~~----ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 168 G-KVKEVSDEKHRINSVPKAEAED----TIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred e-eeEEeecccccccccchhhhcC----ceEEeeeeEEEEecCCCchh
Confidence 8 4677765666776665542211 13567788999999999864
No 264
>PRK02106 choline dehydrogenase; Validated
Probab=98.35 E-value=6.6e-06 Score=95.37 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 338 FRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 338 L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
|.....+.+++|+.++.|++|+.++++++||++.+..+ ....+.++.||||+|+..
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~----~~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGG----RETARARREVILSAGAIN 262 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCc----EEEEEeeeeEEEccCCCC
Confidence 33333345799999999999999888899999876432 134578999999999864
No 265
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.35 E-value=2.2e-06 Score=96.47 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=70.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
++|+|||||++|++||..|++.+ ++|+|+|+.+...-..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~--------------------------------------- 41 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA--------------------------------------- 41 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec---------------------------------------
Confidence 37999999999999999999875 4899999987542000
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
.+.+... .+. ......++....+.+++.|++++++++|+++..++.. |.+.+..++
T Consensus 42 --------------~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~---v~~~~~~~~- 97 (444)
T PRK09564 42 --------------CGLPYFV--GGF----FDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKT---ITVKNLKTG- 97 (444)
T ss_pred --------------CCCceEe--ccc----cCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCE---EEEEECCCC-
Confidence 0000000 000 0001122333445667789999999999998776553 344331111
Q ss_pred CCceeEEecCeEEEcCCCCh
Q 005273 378 QSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s 397 (704)
....+.+|.+|+|||+.+
T Consensus 98 --~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 98 --SIFNDTYDKLMIATGARP 115 (444)
T ss_pred --CEEEecCCEEEECCCCCC
Confidence 112334999999999875
No 266
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.34 E-value=8e-06 Score=91.42 Aligned_cols=99 Identities=24% Similarity=0.337 Sum_probs=75.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|++|+++|..|++.|.+|+++++.+.+...
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------------------------------------- 175 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------------------------------------- 175 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-----------------------------------------
Confidence 478999999999999999999999999999987643100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
.....+...+.+.+++.||++++++.|.++..+ +.+ +.+.++
T Consensus 176 ------------------------------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~--v~~~~g----- 217 (427)
T TIGR03385 176 ------------------------------LFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE-ERV--KVFTSG----- 217 (427)
T ss_pred ------------------------------ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC-CCE--EEEcCC-----
Confidence 000124566778888999999999999998643 332 344443
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+.+|.||+|+|..++.
T Consensus 218 ---~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 218 ---GVYQADMVILATGIKPNS 235 (427)
T ss_pred ---CEEEeCEEEECCCccCCH
Confidence 368999999999998763
No 267
>PRK14694 putative mercuric reductase; Provisional
Probab=98.34 E-value=5.4e-06 Score=93.94 Aligned_cols=39 Identities=44% Similarity=0.621 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
...+||+||||||+|+.||..|++.|.+|+|+|++ .+|+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GG 42 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGG 42 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccc
Confidence 35789999999999999999999999999999997 4544
No 268
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.34 E-value=6.7e-06 Score=92.37 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=78.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||||+.|+++|..|++.|.+|+|+++.+.+...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------------------------------- 186 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------------------------------- 186 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-----------------------------------------
Confidence 468999999999999999999999999999988653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
. ...+.+.+.+.+++.||+++++++|+++. +. .|++.++
T Consensus 187 -----------------------------~--d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g----- 225 (438)
T PRK13512 187 -----------------------------M--DADMNQPILDELDKREIPYRLNEEIDAIN--GN---EVTFKSG----- 225 (438)
T ss_pred -----------------------------c--CHHHHHHHHHHHHhcCCEEEECCeEEEEe--CC---EEEECCC-----
Confidence 0 01255667788889999999999999884 22 3555543
Q ss_pred CceeEEecCeEEEcCCCChHHHHHHHHhCCCcc
Q 005273 379 SDIQKLGFDAVILAVGHSARDIYEMLVSHNINL 411 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l 411 (704)
..+.+|.||+|+|..++. ..++..++.+
T Consensus 226 ---~~~~~D~vl~a~G~~pn~--~~l~~~gl~~ 253 (438)
T PRK13512 226 ---KVEHYDMIIEGVGTHPNS--KFIESSNIKL 253 (438)
T ss_pred ---CEEEeCEEEECcCCCcCh--HHHHhcCccc
Confidence 368999999999998763 2344444433
No 269
>PTZ00058 glutathione reductase; Provisional
Probab=98.32 E-value=4.4e-06 Score=96.11 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=75.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||+|+.|+++|..+++.|.+|+|+++++.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~----------------------------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK----------------------------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-----------------------------------------
Confidence 679999999999999999999999999999998653100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCC-EEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENA-RIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g-~v~GV~~~~~~~~~ 377 (704)
. ...+.+.+.+.+++.|+++++++.|.++..+++ .+. +...++
T Consensus 276 -----------------------------~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~---- 319 (561)
T PTZ00058 276 -----------------------------F--DETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDG---- 319 (561)
T ss_pred -----------------------------C--CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCC----
Confidence 0 013556677888899999999999999875433 232 233222
Q ss_pred CCceeEEecCeEEEcCCCChH
Q 005273 378 QSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
...+.+|.||+|+|..++
T Consensus 320 ---~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 320 ---RKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred ---CEEEECCEEEECcCCCCC
Confidence 146999999999998875
No 270
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.32 E-value=2e-06 Score=95.38 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA--DVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~--~v~l~e~~~~ 253 (704)
.++|+|||||+||++||..|++.|+ +|+|+++.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3689999999999999999999887 7999998754
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.31 E-value=6.3e-06 Score=94.48 Aligned_cols=100 Identities=23% Similarity=0.426 Sum_probs=77.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||||+.|+++|..|++.|.+|+|+++.+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------------- 388 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------------- 388 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence 5799999999999999999999999999999775421
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
....+.+.+++ .||++++++.++++..+++++.+|++.+...+
T Consensus 389 -----------------------------------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~- 432 (515)
T TIGR03140 389 -----------------------------------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSG- 432 (515)
T ss_pred -----------------------------------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCC-
Confidence 00123445555 59999999999999776678888887654211
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+..++.+|.||+|+|..++.
T Consensus 433 --~~~~i~~D~vi~a~G~~Pn~ 452 (515)
T TIGR03140 433 --EEKQLDLDGVFVQIGLVPNT 452 (515)
T ss_pred --cEEEEEcCEEEEEeCCcCCc
Confidence 23579999999999988764
No 272
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.31 E-value=2.6e-06 Score=96.34 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=33.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
+||+||||||+|+.||..|++.|++|+|+|++. +|+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG 36 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGG 36 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccC
Confidence 589999999999999999999999999999975 454
No 273
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.31 E-value=1e-05 Score=93.22 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 336 RNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 336 ~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
..+....++.+++|+.++.|++|+.++++++||++.+... ....+.++.||+|+|+.
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~----~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGR----KEHTEANKEVILSAGAI 254 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCc----EEEEEEeeeEEEccCCC
Confidence 3444433456799999999999999988999999875421 12346899999999983
No 274
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.30 E-value=4e-06 Score=94.47 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..++|+|||+|..|+.+|..|++.|.+|+++++......
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~----------------------------------------- 309 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM----------------------------------------- 309 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC-----------------------------------------
Confidence 457999999999999999999999999999998743100
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcC----
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSD---- 372 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~---- 372 (704)
. ......+.+++.||++++++.++++..+ ++++.+|.+..
T Consensus 310 ------------------------------~-----~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 354 (449)
T TIGR01316 310 ------------------------------T-----ARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQ 354 (449)
T ss_pred ------------------------------C-----CCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEec
Confidence 0 0012234567889999999999998754 46788887641
Q ss_pred ---CCCC-----CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc
Q 005273 373 ---SKDN-----SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL 411 (704)
Q Consensus 373 ---~~~~-----~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l 411 (704)
.++. ..++...+.+|.||+|+|..++. .++...++.+
T Consensus 355 ~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~--~~l~~~gl~~ 399 (449)
T TIGR01316 355 EQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP--IMAETTRLKT 399 (449)
T ss_pred CcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc--hhhhccCccc
Confidence 1110 01223579999999999987754 3444445443
No 275
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.30 E-value=5.8e-06 Score=99.04 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=76.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccc--hhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRD--IGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~--~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
++|+||||||+||++|+.|++. |++|+|+|+.+.....+.. +...... .+.. + +..+
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~-~L~~-------------~-~~~~---- 61 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLG-NLRA-------------A-DPVS---- 61 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHH-HHHh-------------c-CHHH----
Confidence 3799999999999999999998 8999999998754211110 0000000 0000 0 0000
Q ss_pred ccCchhHHHHHHHHHHcCC-----Cc-eeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEE
Q 005273 296 GRNSNSVLAVMNTLVHFGA-----PA-NILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVK 369 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~-----~~-~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~ 369 (704)
.......+..+.. .. .....+.++.. ..-..+.+.|.+++.+.||+++++++|+++..
T Consensus 62 ------~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------- 125 (765)
T PRK08255 62 ------AAAIGDAFNHWDDIDVHFKGRRIRSGGHGFAG-IGRKRLLNILQARCEELGVKLVFETEVPDDQA--------- 125 (765)
T ss_pred ------HHHHHHhcccCCceEEEECCEEEEECCeeEec-CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh---------
Confidence 0000000000000 00 00112222222 22356889999999999999999999876521
Q ss_pred EcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 370 VSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 370 ~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
....+|.||.|+|.++..
T Consensus 126 ------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 126 ------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred ------------hhcCCCEEEEcCCCCHHH
Confidence 124689999999998854
No 276
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.30 E-value=9.7e-06 Score=90.59 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+.+.|.+.++..|++++++++|.+|..++ +++++|++.++ +++.|+.||....-++
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~G--------e~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGG--------EVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCC--------cEEECCEEEECccccc
Confidence 4578888888899999999999999998875 57888988776 4789999999776665
No 277
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.29 E-value=1.8e-05 Score=87.04 Aligned_cols=62 Identities=23% Similarity=0.353 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC-hHHH
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS-ARDI 400 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~-s~~~ 400 (704)
.+.+.|.+.++++|++++.+++|.++..+++++++|.+.++.+ ..+.||.||+|+|+| +..+
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~------~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRD------IPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCcc------ceEECCEEEEccCCCcCHHH
Confidence 4788899999999999999999999999999999888766422 379999999999999 8654
No 278
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.28 E-value=4.5e-06 Score=93.79 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAV 254 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~ 254 (704)
++|||||||++|+.||..|++. +++|+|+|+++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 5899999999999999999886 6789999998754
No 279
>PRK14727 putative mercuric reductase; Provisional
Probab=98.28 E-value=3.7e-06 Score=95.49 Aligned_cols=39 Identities=33% Similarity=0.507 Sum_probs=35.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
++||+|||+||+|+.+|..|++.|.+|+|+|++..+|+.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~ 54 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGC 54 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeE
Confidence 589999999999999999999999999999998777654
No 280
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=5.1e-06 Score=93.90 Aligned_cols=32 Identities=44% Similarity=0.831 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
+|+|||+||+|+.||..+++.|.+|+|+|++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999975
No 281
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.25 E-value=1.3e-05 Score=90.37 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCC
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
..+.+.|.+.+++.|++|+++++|++|... ++++++|++.+++++ +..++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~---~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQ---RRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCC---ceeEEECCEEEEcCCH
Confidence 346788888898899999999999999764 456888988665321 1126899999999965
No 282
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.25 E-value=8.3e-06 Score=89.46 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=32.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCcccc
Q 005273 221 KVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVE 255 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~ 255 (704)
||+|||||+||+++|+.|++. |++|+|+|+.+..+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~ 37 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG 37 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 799999999999999999987 99999999987654
No 283
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.24 E-value=5.2e-06 Score=90.59 Aligned_cols=100 Identities=29% Similarity=0.423 Sum_probs=76.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-------------cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGA-------------DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTW 286 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~-------------~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~ 286 (704)
-.++|||||+.|.+.|-.|+.+-+ +|+|+|+++.+..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 479999999999999998876322 7888888876420
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEE
Q 005273 287 SDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 287 sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
.-...+.+...+.|+++||++++++.|+++..+
T Consensus 206 ------------------------------------------~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----- 238 (405)
T COG1252 206 ------------------------------------------MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----- 238 (405)
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----
Confidence 001236677888999999999999999998543
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHH
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEM 403 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~ 403 (704)
+|++.+++ ..|.++.||.|+|..++.+...
T Consensus 239 ~v~~~~g~-------~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 239 GVTLKDGE-------EEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred cEEEccCC-------eeEecCEEEEcCCCcCChhhhh
Confidence 57777662 2599999999999988765553
No 284
>PRK13748 putative mercuric reductase; Provisional
Probab=98.24 E-value=9.5e-06 Score=94.10 Aligned_cols=38 Identities=45% Similarity=0.615 Sum_probs=34.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+||+||||||+|+.||..|++.|.+|+|+|++ .+|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence 589999999999999999999999999999997 55543
No 285
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.24 E-value=1.7e-06 Score=94.37 Aligned_cols=39 Identities=36% Similarity=0.505 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
..+++|+|||+|++|+++|..|++.|++|+++|+.+.++
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 346799999999999999999999999999999987664
No 286
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.23 E-value=6.8e-06 Score=91.68 Aligned_cols=41 Identities=34% Similarity=0.654 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
..+|++|||+||+|..||..+++.|.+|.++|+...+|+.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC 43 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC 43 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence 36899999999999999999999999999999997777654
No 287
>PLN02612 phytoene desaturase
Probab=98.23 E-value=2.4e-05 Score=90.69 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCC
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGH 395 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~ 395 (704)
.+.+.|.+.+++.|++|+++++|++|..+ ++.+++|.+.++ ..+.||.||+|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G--------~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNG--------SVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCC--------cEEECCEEEECCCH
Confidence 46788888888899999999999999885 455677887654 36899999999864
No 288
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.22 E-value=5.7e-06 Score=94.01 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERG 251 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~ 251 (704)
.+||+|||+||+|+.||+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 479999999999999999999999999999974
No 289
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.22 E-value=1.9e-06 Score=94.22 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=57.1
Q ss_pred cCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 326 LGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 326 ~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
.|+..-..+.-.+.=.+.++|..+....+|.+++.++ +++.|+.+.|.- +|+...|+|+.||.|||.++..+.+|-
T Consensus 218 DGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~i---TG~e~~I~Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 218 DGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHI---TGKEYEIRAKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred cCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEee---cCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence 3444434444455555667899999889999988765 568899988753 235678999999999999998776665
Q ss_pred Hh
Q 005273 405 VS 406 (704)
Q Consensus 405 ~~ 406 (704)
..
T Consensus 295 d~ 296 (680)
T KOG0042|consen 295 DE 296 (680)
T ss_pred cc
Confidence 44
No 290
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.21 E-value=1.2e-05 Score=90.50 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 332 IPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 332 ~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+-+.|++.+.+.||+++.++ |+++..+ ++.+.+|++.++ .+++||.||-|+|..+
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g--------~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDG--------RTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTS--------EEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCC--------CEEEEeEEEECCCccc
Confidence 4577889999999999999885 6666554 567889998875 5799999999999766
No 291
>PLN02487 zeta-carotene desaturase
Probab=98.21 E-value=2.2e-05 Score=90.33 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCEEEeCeEEEEEEEeC---C--EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 333 PLLRNFRQHLQRLGVTIKFGTRVDDLLIEN---A--RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 333 ~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~---g--~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.+.+.+.+.+++.|++|++++.|.+|..++ + +++||.+.++.. ...+.+|.||+|++.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~-----~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATE-----KEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCC-----ceEEECCEEEECCCHHH
Confidence 378899999999999999999999999873 2 478998842111 14688999999999764
No 292
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=6.3e-06 Score=93.15 Aligned_cols=37 Identities=41% Similarity=0.620 Sum_probs=33.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
.+||+||||||+|+.||..|++.|++|+|+|+ ..+|+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccc
Confidence 48999999999999999999999999999999 45554
No 293
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.19 E-value=5.2e-05 Score=82.87 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCC
Q 005273 331 LIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNI 409 (704)
Q Consensus 331 ~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi 409 (704)
...+.+.|.+.+.+. |++++++++|++|...++.-+-|.+.+... +...++.|+.|++.+|+.+ +.+|++.|+
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~---~~~~~v~a~FVfvGAGG~a---L~LLqksgi 253 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKT---GEKREVRAKFVFVGAGGGA---LPLLQKSGI 253 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCC---CCeEEEECCEEEECCchHh---HHHHHHcCC
Confidence 345788888888887 999999999999998877656677655322 2346899999999999987 456777776
Q ss_pred c
Q 005273 410 N 410 (704)
Q Consensus 410 ~ 410 (704)
+
T Consensus 254 ~ 254 (488)
T PF06039_consen 254 P 254 (488)
T ss_pred h
Confidence 4
No 294
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.17 E-value=2.2e-05 Score=83.00 Aligned_cols=99 Identities=25% Similarity=0.486 Sum_probs=73.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------------- 177 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------------- 177 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------------------------------------
Confidence 5699999999999999999999999999999874320
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
....+.+.+++. |+++++++.++++..+ +++.++.+.+...
T Consensus 178 -----------------------------------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~-- 219 (300)
T TIGR01292 178 -----------------------------------AEKILLDRLRKNPNIEFLWNSTVKEIVGD-NKVEGVKIKNTVT-- 219 (300)
T ss_pred -----------------------------------cCHHHHHHHHhCCCeEEEeccEEEEEEcc-CcEEEEEEEecCC--
Confidence 001233455666 9999999999998754 4666676653211
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++..++.+|.||+|+|..++.
T Consensus 220 -g~~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 220 -GEEEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred -CceEEEEccEEEEeeCCCCCh
Confidence 123579999999999987653
No 295
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.14 E-value=6.3e-05 Score=85.36 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeC---C--EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIEN---A--RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~---g--~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
+.+.+.+.+++.|++|+++++|++|..++ + ++++|.+.++++. ..+.||+||+|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-----~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-----KVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-----eEEECCEEEECCChHH
Confidence 55678899999999999999999998754 2 3788888654321 3588999999999764
No 296
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.14 E-value=1.9e-05 Score=87.25 Aligned_cols=101 Identities=29% Similarity=0.371 Sum_probs=81.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++++|||+|++|+++|..|+++|++|+++|+.+.++++..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 47999999999999999999999999999999987642100
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEE--EEEcCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVG--VKVSDSKDN 376 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~G--V~~~~~~~~ 376 (704)
. ..+.+.+.+.+++.|+++++++.+.++...++.... +...++
T Consensus 177 ----------------------------~----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--- 221 (415)
T COG0446 177 ----------------------------D----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--- 221 (415)
T ss_pred ----------------------------h----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC---
Confidence 0 136677888999999999999999999876654443 333333
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.+++++|..++
T Consensus 222 -----~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 222 -----EEIKADLVIIGPGERPN 238 (415)
T ss_pred -----cEEEeeEEEEeeccccc
Confidence 47999999999999885
No 297
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.13 E-value=3.2e-06 Score=69.06 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=32.0
Q ss_pred EEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 224 VVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 224 vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
|||||++||.+|+.|++.|++|+|+|+.+.+|++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcce
Confidence 89999999999999999999999999999988654
No 298
>PRK10262 thioredoxin reductase; Provisional
Probab=98.12 E-value=2.4e-05 Score=84.13 Aligned_cols=105 Identities=22% Similarity=0.488 Sum_probs=80.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||+|..|+++|..|++.|.+|+++++.+....
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------ 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------ 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------
Confidence 57999999999999999999999999999998753210
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
+ ..+.+.+.+.+++.||++++++.++++..+++.+.+|++.+....
T Consensus 184 ------------------------------~--~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~-- 229 (321)
T PRK10262 184 ------------------------------E--KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS-- 229 (321)
T ss_pred ------------------------------C--HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCC--
Confidence 0 024456677788899999999999999765556777877653211
Q ss_pred CceeEEecCeEEEcCCCChHH
Q 005273 379 SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++..++.+|.||+|+|..++.
T Consensus 230 ~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 230 DNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred CeEEEEECCEEEEEeCCccCh
Confidence 123579999999999988764
No 299
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.12 E-value=9.5e-07 Score=95.18 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=82.3
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCC--
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVA-- 114 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~-- 114 (704)
.+|.. +-..++-.+.|...+.++.++.++|.+++|.|++... +.. ...|++.++++.||+.+++||.
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~----~~~-----~~~~~~~~~~~~ik~~~~ipVi~~ 281 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPA----RID-----VYPGYQVPFAEHIREHANIATGAV 281 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC----CCC-----CCccccHHHHHHHHhhcCCcEEEe
Confidence 45533 4444566788889999999999999999999975321 111 1247788999999999999986
Q ss_pred -CCC-hhhHHHHHhcc-cc----cccccCCCeEEEEEEEeeccc
Q 005273 115 -SML-PAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSKL 151 (704)
Q Consensus 115 -~~~-p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~~ 151 (704)
.+. |+.|+++++.+ +| +|+.|+||+|++|+..++..+
T Consensus 282 G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 282 GLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGFE 325 (337)
T ss_pred CCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCCC
Confidence 354 99999999876 99 999999999999998888765
No 300
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.11 E-value=9.3e-06 Score=87.03 Aligned_cols=38 Identities=39% Similarity=0.647 Sum_probs=34.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
..+|+|||||++|+.+|..|+++|.+|+|+|+...+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 35899999999999999999999999999999877643
No 301
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.10 E-value=2.3e-05 Score=91.57 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
+++|+|||||+.|++.|..|++.|.+|+|+|+.+.+...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~----------------------------------------- 350 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL----------------------------------------- 350 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------------------------------------
Confidence 468999999999999999999999999999998754210
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHH-HHCCCEEEeCeEEEEEEEeCC-EEEEEEEcCCC-C
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHL-QRLGVTIKFGTRVDDLLIENA-RIVGVKVSDSK-D 375 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l-~~~Gv~i~~~t~V~~i~~~~g-~v~GV~~~~~~-~ 375 (704)
. ...+.+.+.+.+ ++.||++++++.|+++...++ ....+.+.+.. +
T Consensus 351 -----------------------------~--d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~ 399 (659)
T PTZ00153 351 -----------------------------L--DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTG 399 (659)
T ss_pred -----------------------------C--CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccc
Confidence 0 012444555554 568999999999999975443 21223332211 0
Q ss_pred CCC------CceeEEecCeEEEcCCCChHH
Q 005273 376 NSQ------SDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 376 ~~~------~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
... .+..++.+|.||+|+|..++.
T Consensus 400 ~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 400 ESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred cccccccccccceEEEcCEEEEEECcccCC
Confidence 000 011369999999999998763
No 302
>PLN02529 lysine-specific histone demethylase 1
Probab=98.10 E-value=3.2e-06 Score=99.26 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=45.5
Q ss_pred cccccchhhhhhhhccCCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 191 CKKVSDDTLLRKEISSGSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 191 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
|.+||.. +. ++ .+....++|+|||||++||+||..|+++|++|+|+|+.+.+|++.
T Consensus 144 c~vnp~~---------~~--~~-~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 144 FGVSPSF---------AS--PI-PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred eeecccc---------cC--CC-CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 9999753 22 11 133456899999999999999999999999999999999888753
No 303
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.09 E-value=3.8e-05 Score=79.80 Aligned_cols=180 Identities=23% Similarity=0.290 Sum_probs=95.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH----cCCcEEEEEeCcccccccc--chhH--------------HHHHHhhcccccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAE----LGADVTLIERGQAVEQRGR--DIGA--------------LVVRRMLEMESNFCF 278 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~----~g~~v~l~e~~~~~~~~~~--~~~~--------------~~~~~~l~~~~n~~~ 278 (704)
..+|+|||||..|.+.|+-|.+ .|++|+|+|+++....... .+++ ++...++.. .+..+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~-a~ehl 164 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRN-AREHL 164 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHH-HHHhh
Confidence 5799999999999999998865 4799999999976432211 1111 011111100 00001
Q ss_pred cc-----CCcccccCcchhhhhccCchhHHHHHHHHHHcCCCceeecCC-----cccc---------------CCCChHH
Q 005273 279 GE-----GGAGTWSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDG-----KSHL---------------GTDRLIP 333 (704)
Q Consensus 279 g~-----gG~~~~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g-----~~~~---------------g~~~~~~ 333 (704)
+. -....+..+.|...-.+....+....+...+.|+....+... -|++ |.-....
T Consensus 165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~ 244 (509)
T KOG2853|consen 165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWA 244 (509)
T ss_pred ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHH
Confidence 10 001111222222111111122223333344555544433221 1221 2333445
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEe----------CC-------EEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIE----------NA-------RIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~----------~g-------~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
++..+++....+|+.+.-+ +|++++.+ ++ ++.++.+.-.+. ....+++..+|+|+|.|
T Consensus 245 LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~----~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 245 LLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDA----LARPVKFALCVNAAGAW 319 (509)
T ss_pred HHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCch----hcCceeEEEEEeccCcc
Confidence 8889999999999998744 67776654 22 344444442221 12578999999999999
Q ss_pred hHHHHHHH
Q 005273 397 ARDIYEML 404 (704)
Q Consensus 397 s~~~~~~l 404 (704)
+.....++
T Consensus 320 s~QvArlA 327 (509)
T KOG2853|consen 320 SGQVARLA 327 (509)
T ss_pred HHHHHHHh
Confidence 97654443
No 304
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.09 E-value=2.3e-05 Score=86.27 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=68.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
++|||||||+||+.+|..|.+.+ .+|+|+++.+... |+.+.+...+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~------------------------------y~~~~l~~~~~- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE------------------------------YNKPDLSHVFS- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC------------------------------cCcCcCcHHHh-
Confidence 58999999999999999998754 5799999876421 00000000000
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHH-HHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLR-NFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~-~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
+......+.. ...+.+++.|++++.+++|+.+..++.. |.+ ++
T Consensus 52 -----------------------------~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~---v~~-~~--- 95 (377)
T PRK04965 52 -----------------------------QGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQV---VKS-QG--- 95 (377)
T ss_pred -----------------------------CCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCE---EEE-CC---
Confidence 0001112222 2334556789999999999998765543 223 22
Q ss_pred CCCceeEEecCeEEEcCCCCh
Q 005273 377 SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+.+|.||+|||..+
T Consensus 96 -----~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 96 -----NQWQYDKLVLATGASA 111 (377)
T ss_pred -----eEEeCCEEEECCCCCC
Confidence 3689999999999875
No 305
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.07 E-value=4.2e-05 Score=85.59 Aligned_cols=95 Identities=29% Similarity=0.378 Sum_probs=72.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHH--------------cCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAE--------------LGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGT 285 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~--------------~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~ 285 (704)
++|+|||||++|++.|..|+. .+.+|+|+++++.+...
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 489999999999999998875 37889999988653100
Q ss_pred ccCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEE
Q 005273 286 WSDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARI 365 (704)
Q Consensus 286 ~sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v 365 (704)
-...+.+.+.+.+++.||+++++++|.++.. +
T Consensus 226 --------------------------------------------~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-- 257 (424)
T PTZ00318 226 --------------------------------------------FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K-- 257 (424)
T ss_pred --------------------------------------------CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C--
Confidence 0012556778888999999999999998753 3
Q ss_pred EEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 366 VGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 366 ~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.|.+.++ .++.+|.||+|+|..++.
T Consensus 258 -~v~~~~g--------~~i~~d~vi~~~G~~~~~ 282 (424)
T PTZ00318 258 -EVVLKDG--------EVIPTGLVVWSTGVGPGP 282 (424)
T ss_pred -EEEECCC--------CEEEccEEEEccCCCCcc
Confidence 3556654 379999999999987754
No 306
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.06 E-value=2.3e-05 Score=91.63 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC-cccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERG-QAVEQR 257 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~-~~~~~~ 257 (704)
..+||+|||+||+|..||+.+++.|.+|+|+|++ ..+|+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGt 155 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGT 155 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccc
Confidence 3689999999999999999999999999999975 346654
No 307
>PRK12831 putative oxidoreductase; Provisional
Probab=98.06 E-value=3e-05 Score=87.72 Aligned_cols=107 Identities=28% Similarity=0.363 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...++|+|||||..|+.+|..|.+.|.+|+|+.+.....
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~----------------------------------------- 317 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE----------------------------------------- 317 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc-----------------------------------------
Confidence 346899999999999999999999999999998764210
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~--- 372 (704)
. ... .. ..+.+++.||++++++.+.++..+ ++++.+|++..
T Consensus 318 -----------------m-------------~a~----~~-e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 362 (464)
T PRK12831 318 -----------------L-------------PAR----VE-EVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred -----------------C-------------CCC----HH-HHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence 0 000 01 113456789999999999998753 56788877641
Q ss_pred ----CCCCC-----CCceeEEecCeEEEcCCCChHH
Q 005273 373 ----SKDNS-----QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 373 ----~~~~~-----~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.++.. +++...+.+|.||+|+|..+..
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECCCCCCCh
Confidence 11100 1223579999999999987754
No 308
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.04 E-value=2.2e-05 Score=89.07 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..+.+.|. +|++++....+....
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~-------------------------------------- 321 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR-------------------------------------- 321 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc--------------------------------------
Confidence 46799999999999999998888886 688666543221000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcC---C
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSD---S 373 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~---~ 373 (704)
. ... ..... ......+.+++.||++++++.++++..+++++.+|++.. .
T Consensus 322 ---------------~--------~~~--~~~~~---~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~ 373 (471)
T PRK12810 322 ---------------N--------KNN--PWPYW---PMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELG 373 (471)
T ss_pred ---------------c--------ccc--CCccc---chHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEec
Confidence 0 000 00000 001124556778999999999999976678888887542 1
Q ss_pred CC---CCCCceeEEecCeEEEcCCCChH
Q 005273 374 KD---NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 374 ~~---~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
++ ...++..++.+|.||+|+|..++
T Consensus 374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 374 EGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred CCCccccCCceEEEECCEEEECcCcCCC
Confidence 10 00123467999999999997765
No 309
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.03 E-value=5.1e-05 Score=84.10 Aligned_cols=38 Identities=39% Similarity=0.588 Sum_probs=35.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCcccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQR 257 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~ 257 (704)
++|+|||||++||+||+.|++++ .+|+|||+++.+|+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 47999999999999999999999 999999999888763
No 310
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.03 E-value=3.4e-05 Score=88.56 Aligned_cols=100 Identities=23% Similarity=0.396 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..++|+|||||..|+++|..|+..+.+|+|+++.+.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~------------------------------------------ 387 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK------------------------------------------ 387 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc------------------------------------------
Confidence 35799999999999999999999999999999875431
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHH-CCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQR-LGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~-~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
....+.+.+.+ .||++++++.++++..+++++.++++.+..++
T Consensus 388 ------------------------------------~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g 431 (517)
T PRK15317 388 ------------------------------------ADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTG 431 (517)
T ss_pred ------------------------------------ccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCC
Confidence 00123344554 59999999999999876678888887754221
Q ss_pred CCCceeEEecCeEEEcCCCChH
Q 005273 377 SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+..++.+|.|++|+|..++
T Consensus 432 ---~~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 432 ---EEHHLELEGVFVQIGLVPN 450 (517)
T ss_pred ---cEEEEEcCEEEEeECCccC
Confidence 2357999999999998874
No 311
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.01 E-value=1.8e-05 Score=95.05 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=69.2
Q ss_pred EEEEcCCHHHHHHHHHHHHc---CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 222 VAVVGGGPSGLFASLVLAEL---GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 222 v~vvG~G~aGl~aA~~l~~~---g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
|||||+|+||+.||..|.+. +++|+||++.+.+.... ..+...+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r------------------------------~~L~~~l~-- 48 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNR------------------------------ILLSSVLQ-- 48 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccc------------------------------ccccHHHC--
Confidence 68999999999999988774 47899999987642100 00000000
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQ 378 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~ 378 (704)
+......+.....+.+++.|++++++++|+.|..+.. -|.+.++
T Consensus 49 ----------------------------g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k---~V~~~~g----- 92 (785)
T TIGR02374 49 ----------------------------GEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQK---QVITDAG----- 92 (785)
T ss_pred ----------------------------CCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCC---EEEECCC-----
Confidence 0001111222234456778999999999999876543 2445443
Q ss_pred CceeEEecCeEEEcCCCChH
Q 005273 379 SDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 379 ~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.+|+|||+.+.
T Consensus 93 ---~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 93 ---RTLSYDKLILATGSYPF 109 (785)
T ss_pred ---cEeeCCEEEECCCCCcC
Confidence 36899999999998763
No 312
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.01 E-value=1.6e-06 Score=94.38 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=84.7
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHc--CCCCC
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVL--QFPVA 114 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~--~ipv~ 114 (704)
++|-. +...++-++.|...+.++.++.++|++++|.|.+.......+. ...++.+.|++.+ ++||+
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~----------~~~~~~~~ik~~~~~~iPVi 288 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD----------DNQTIMELVKERIAGRLPLI 288 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc----------chHHHHHHHHHHhCCCCCEE
Confidence 55533 4334566778889999999999999999999965432211111 1356778888888 88986
Q ss_pred C---C-ChhhHHHHHhcccc----cccccCCCeEEEEEEEeeccccccCCchhhhhhccc
Q 005273 115 S---M-LPAEAFTVVRKSFD----ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLE 166 (704)
Q Consensus 115 ~---~-~p~~a~~i~~~~~D----aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~ 166 (704)
. + +|+.++++++.++| +|+.|+||+|++|+..+..++ |++||+|..
T Consensus 289 ~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~~G~~~~------ir~ci~~~~ 342 (353)
T cd04735 289 AVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIKEGREDE------INLEIDPDD 342 (353)
T ss_pred EECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHHcCChhh------hhhcCCHHH
Confidence 3 5 49999999987899 999999999999999997654 788887653
No 313
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.01 E-value=5.9e-05 Score=86.57 Aligned_cols=72 Identities=31% Similarity=0.305 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHH
Q 005273 330 RLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEML 404 (704)
Q Consensus 330 ~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l 404 (704)
....++..+.+.+.++|++++++++|+++..+++++++|++.+..+ ++...+.|+.||+|+|.|+..+..++
T Consensus 126 dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~---g~~~~i~a~~VVnAaG~wa~~l~~~~ 197 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKT---GEEERIEAQVVINAAGIWAGRIAEYA 197 (516)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCC---CcEEEEEcCEEEECCCcchHHHHHhc
Confidence 4456788888999999999999999999998889999998864211 11247999999999999998665544
No 314
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=9.5e-06 Score=84.34 Aligned_cols=118 Identities=25% Similarity=0.301 Sum_probs=80.5
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhh
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~ 294 (704)
..+..+||+||||||||-+||++.||+|.+.-|+- ...|++..+
T Consensus 207 ~~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvld---------------------------------- 250 (520)
T COG3634 207 NAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLD---------------------------------- 250 (520)
T ss_pred hccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecc----------------------------------
Confidence 34567999999999999999999999999876652 222222111
Q ss_pred hccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe--CCEEEEEEEcC
Q 005273 295 IGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE--NARIVGVKVSD 372 (704)
Q Consensus 295 ~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~--~g~v~GV~~~~ 372 (704)
..++...+.. | ......+..+|.+..+++.|++..-.+++++... .+....|++.+
T Consensus 251 ----------------T~~IENfIsv---~---~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n 308 (520)
T COG3634 251 ----------------TMGIENFISV---P---ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN 308 (520)
T ss_pred ----------------ccchhheecc---c---cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC
Confidence 0111111100 0 0112357888999999999999888888888763 34566788887
Q ss_pred CCCCCCCceeEEecCeEEEcCCCChH
Q 005273 373 SKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 373 ~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+ -.++++.||+|||+.=+
T Consensus 309 G--------avLkaktvIlstGArWR 326 (520)
T COG3634 309 G--------AVLKARTVILATGARWR 326 (520)
T ss_pred C--------ceeccceEEEecCcchh
Confidence 6 36899999999997543
No 315
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.98 E-value=3e-05 Score=84.77 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=68.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHc---CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 221 KVAVVGGGPSGLFASLVLAEL---GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~---g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
+|||||||+||+.+|..|.++ +++|+|+|+.+..-- .. .+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~------------------------------~~-~~------ 43 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPY------------------------------SG-ML------ 43 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcc------------------------------cc-hh------
Confidence 589999999999999998643 689999998764210 00 00
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
. .+.. +.....++...+.+.+++.|++++.+ +|+.+..++. .|.+.++
T Consensus 44 -----~----~~~~---------------g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~---~V~~~~g---- 91 (364)
T TIGR03169 44 -----P----GMIA---------------GHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR---KVLLANR---- 91 (364)
T ss_pred -----h----HHHh---------------eeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC---EEEECCC----
Confidence 0 0000 00011123344556677789998875 7888876654 3555554
Q ss_pred CCceeEEecCeEEEcCCCChH
Q 005273 378 QSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.++.+|.+|+|||+...
T Consensus 92 ----~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 92 ----PPLSYDVLSLDVGSTTP 108 (364)
T ss_pred ----CcccccEEEEccCCCCC
Confidence 35899999999998763
No 316
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.98 E-value=3.5e-05 Score=87.12 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..|++.|. +|+++++.....
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~----------------------------------------- 310 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE----------------------------------------- 310 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc-----------------------------------------
Confidence 46799999999999999999999998 899998864210
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDS--- 373 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~--- 373 (704)
.+ .. ....+.+++.||++++++.+.++..+++++.+|++...
T Consensus 311 -----------------~~-----------~~-------~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~ 355 (457)
T PRK11749 311 -----------------MP-----------AS-------EEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELG 355 (457)
T ss_pred -----------------CC-----------CC-------HHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEec
Confidence 00 00 11234567889999999999998766655556655311
Q ss_pred ----CCC----CCCceeEEecCeEEEcCCCChHH
Q 005273 374 ----KDN----SQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 374 ----~~~----~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.+. .+++..++.+|.||+|+|..++.
T Consensus 356 ~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 356 EPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred CcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 000 01223579999999999988763
No 317
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.97 E-value=4.4e-06 Score=90.49 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCC--
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVA-- 114 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~-- 114 (704)
.+|+. +-...+-.+.|...+.++.++.++|.++|+.|++....... ....+..+..+++.++++.||+.+++||.
T Consensus 220 ~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~ 298 (338)
T cd04733 220 GIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAG-AKKESTIAREAYFLEFAEKIRKVTKTPLMVT 298 (338)
T ss_pred EEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccc-cccCCccccchhhHHHHHHHHHHcCCCEEEe
Confidence 55544 33334456788889999999999999999999754221110 00111112247888999999999999996
Q ss_pred -CCC-hhhHHHHHhcc-cc----cccccCCCeEEEEEEEe
Q 005273 115 -SML-PAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMD 147 (704)
Q Consensus 115 -~~~-p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~ 147 (704)
.+. |+.++++++++ +| +|..|+||+|++|+..+
T Consensus 299 G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 299 GGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred CCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhcC
Confidence 354 99999999876 89 99999999999987653
No 318
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.95 E-value=4.7e-05 Score=91.76 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=70.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc----CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 220 PKVAVVGGGPSGLFASLVLAEL----GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~----g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
++|||||+|+||+.+|..|.++ +++|+|+++.+.+.-.. ..+...+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r------------------------------~~L~~~~ 53 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDR------------------------------VHLSSYF 53 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccC------------------------------CcchHhH
Confidence 5899999999999999999764 47899999987652100 0000000
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
.. .....+.....+.+++.|++++.++.|+.+..+.. -|.+.++
T Consensus 54 ~~-------------------------------~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~---~V~~~~G-- 97 (847)
T PRK14989 54 SH-------------------------------HTAEELSLVREGFYEKHGIKVLVGERAITINRQEK---VIHSSAG-- 97 (847)
T ss_pred cC-------------------------------CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCc---EEEECCC--
Confidence 00 00111222233456678999999999998866543 2344443
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.+|+|||+++.
T Consensus 98 ------~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 98 ------RTVFYDKLIMATGSYPW 114 (847)
T ss_pred ------cEEECCEEEECCCCCcC
Confidence 36899999999998763
No 319
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=5.1e-05 Score=82.73 Aligned_cols=104 Identities=28% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.++|+|||+|+.|+++|..|++.|.+ |+|+++.....
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~------------------------------------------ 209 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE------------------------------------------ 209 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh------------------------------------------
Confidence 57899999999999999999999987 99998764210
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC--
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD-- 375 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~-- 375 (704)
.+ ....+.+.++++|+++++++.+.++..+ +++..|.+.+..-
T Consensus 210 ----------------~~------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~ 254 (352)
T PRK12770 210 ----------------AP------------------AGKYEIERLIARGVEFLELVTPVRIIGE-GRVEGVELAKMRLGE 254 (352)
T ss_pred ----------------CC------------------CCHHHHHHHHHcCCEEeeccCceeeecC-CcEeEEEEEEEEecC
Confidence 00 0012334577899999999999888643 4555555432100
Q ss_pred ----------CCCCceeEEecCeEEEcCCCChHH
Q 005273 376 ----------NSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 376 ----------~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+++...+.+|.||+|+|..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 255 PDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred cCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 001123579999999999988754
No 320
>PRK07846 mycothione reductase; Reviewed
Probab=97.93 E-value=4.7e-05 Score=85.84 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=28.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQ 256 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~ 256 (704)
+|++|||+||+|..||.. +.|.+|+|+|++. +|+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GG 35 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGG 35 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCC
Confidence 799999999999988865 4699999999864 454
No 321
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.93 E-value=1.5e-06 Score=94.21 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=85.3
Q ss_pred eeEee--ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCC--
Q 005273 39 AIRCA--KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVA-- 114 (704)
Q Consensus 39 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~-- 114 (704)
++|-+ +...++....|...+....++.++|+++++.|.+..... |....+.....+++.++++.||+.+++||+
T Consensus 220 ~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~ 297 (341)
T PF00724_consen 220 GVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSE--PRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGV 297 (341)
T ss_dssp EEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEB--TSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEE
T ss_pred EEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccc--cccccccccccchhhhhhhhhhhhcCceEEEE
Confidence 67744 777788888999889999999999999999887553222 222222223357888999999999999996
Q ss_pred -CCC-hhhHHHHHhcc-cc----cccccCCCeEEEEEEEeecc
Q 005273 115 -SML-PAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSK 150 (704)
Q Consensus 115 -~~~-p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~ 150 (704)
.+. |+.|+++++++ +| +|+.|+||+|++|+..++.+
T Consensus 298 G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g~~d 340 (341)
T PF00724_consen 298 GGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREGRED 340 (341)
T ss_dssp SSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred eeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcCCcc
Confidence 366 88899999777 99 99999999999998877653
No 322
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.93 E-value=4.2e-05 Score=85.61 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.+++|||||||.||+.+|..|.+.+++|+|+++.+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 357899999999999999999877889999998764
No 323
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.88 E-value=7.2e-05 Score=81.60 Aligned_cols=132 Identities=25% Similarity=0.331 Sum_probs=96.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
...|++||+|..||++|..|...+++|+++++.+.+-.+ +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~-----------l----------------------------- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR-----------L----------------------------- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh-----------h-----------------------------
Confidence 568999999999999999999999999999988654110 0
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~GV~~~~~~~~~ 377 (704)
....+.+.+...++++||+++.++.+.++.... |+++-|.+.++
T Consensus 253 -------------------------------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg---- 297 (478)
T KOG1336|consen 253 -------------------------------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG---- 297 (478)
T ss_pred -------------------------------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC----
Confidence 001356777788899999999999999997654 78999999887
Q ss_pred CCceeEEecCeEEEcCCCChHHHH-H---HHHhC-CCcc-------cccceeeEEEEecchhhh
Q 005273 378 QSDIQKLGFDAVILAVGHSARDIY-E---MLVSH-NINL-------VPKDFAVGLRMEHPQELI 429 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~~~-~---~l~~~-gi~l-------~~~~~avG~~~~~p~~~~ 429 (704)
.++.||.||+.+|..+..-+ + ++... ++++ .+..|++|+....|...+
T Consensus 298 ----~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~ 357 (478)
T KOG1336|consen 298 ----KTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGY 357 (478)
T ss_pred ----CEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccc
Confidence 47999999999999875311 1 11111 1222 245677777766554443
No 324
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.86 E-value=6.4e-05 Score=84.81 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=36.1
Q ss_pred EEEeeecCceeccCCCCCccccCcCCeeEccccchhhHHHHHHHHHHHHHHHHHHhh
Q 005273 625 GVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAGYAGGIVSAAADGMYAGFAVAKD 681 (704)
Q Consensus 625 Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~aG~~GGi~sA~~~G~~Aa~~i~~~ 681 (704)
|++++...-+. +| +.|+ +++||+|++||+++...-...|...|..||+.|...
T Consensus 276 gl~~~~~G~i~--vd-~~~~-Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 276 GVEVDEDGRIK--VD-EYGR-TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CeeECCCCcEe--eC-CCcc-cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 66665433333 45 4688 599999999999864322335777788888888743
No 325
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00033 Score=72.89 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCCh
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
+.+.|.+++++.|+-+..+-+|.+....+++|+.|.+.+..+ ..++||..|+|+|++-
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~d------iP~~a~~~VLAsGsff 317 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHAD------IPLRADFYVLASGSFF 317 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEeccccc------CCCChhHeeeeccccc
Confidence 667899999999999999999999999999999999987643 5799999999999863
No 326
>PLN02785 Protein HOTHEAD
Probab=97.83 E-value=0.00021 Score=82.98 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
...+|+||||+|.+|+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 345899999999999999999999 689999999974
No 327
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.81 E-value=1.7e-05 Score=85.80 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCccccccccchhHHHHHHhhccccccccccC-CcccccCcchhhhhc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEG-GAGTWSDGKLVTRIG 296 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~g-G~~~~sdg~l~~~~~ 296 (704)
.+|+++||.||++|+.|..|.+.+ .++.+||+.+... |..+++-+++.++.... ...+..|+.-
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~---------Wh~gmll~~~~~q~~fl~Dlvt~~~P~s----- 67 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS---------WHPGMLLPGARMQVSFLKDLVTLRDPTS----- 67 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----------TTGGG--SS-B-SS-TTSSSSTTT-TTS-----
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC---------cCCccCCCCCccccccccccCcCcCCCC-----
Confidence 369999999999999999999876 8999999877531 22233333322221110 0011111110
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCC---EEEEEEEcCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENA---RIVGVKVSDS 373 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g---~v~GV~~~~~ 373 (704)
-..+++.+.+.|--......+..++... ++.++++-.+++..-.++++++|++|...++ ..+.|.+.+.
T Consensus 68 -----~~sflnYL~~~~rl~~f~~~~~~~p~R~---ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~ 139 (341)
T PF13434_consen 68 -----PFSFLNYLHEHGRLYEFYNRGYFFPSRR---EFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS 139 (341)
T ss_dssp -----TTSHHHHHHHTT-HHHHHHH--SS-BHH---HHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET
T ss_pred -----cccHHHHHHHcCChhhhhhcCCCCCCHH---HHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeec
Confidence 0011222222221111010111112222 2444444444445655899999999987653 3566776542
Q ss_pred CCCCCCceeEEecCeEEEcCCCCh
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.+ +...+.|+.||+|+|..+
T Consensus 140 ~g----~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 140 DG----DGETYRARNVVLATGGQP 159 (341)
T ss_dssp TS-----EEEEEESEEEE----EE
T ss_pred CC----CeeEEEeCeEEECcCCCC
Confidence 22 246899999999999665
No 328
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.81 E-value=0.00024 Score=81.11 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=34.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVE 255 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~ 255 (704)
+||+|||+||+|+.+|..|++.|++|+++|++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 589999999999999999999999999999998765
No 329
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.79 E-value=7.8e-06 Score=88.30 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=72.4
Q ss_pred CCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCC---CCChhhHHHHHh
Q 005273 50 RYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVA---SMLPAEAFTVVR 126 (704)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~---~~~p~~a~~i~~ 126 (704)
-.+.|...+...+++.++|++|+|.|.+.... .+++.++++.||+.+++||+ .+.|+.|+++++
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-------------~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~ 304 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-------------EDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALA 304 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------------cccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 34567788888899999999999999543111 26788999999999999996 366999999998
Q ss_pred cc-cc----cccccCCCeEEEEEEEeec
Q 005273 127 KS-FD----ARKVLKEPKFVYTVDMDVS 149 (704)
Q Consensus 127 ~~-~D----aR~~ladp~~~~kv~~~~~ 149 (704)
.+ +| +|+.|+||+|++|+..+..
T Consensus 305 ~g~~D~V~~gR~~ladP~~~~k~~~g~~ 332 (338)
T cd02933 305 DGKADLVAFGRPFIANPDLVERLKNGAP 332 (338)
T ss_pred cCCCCEEEeCHhhhhCcCHHHHHhcCCC
Confidence 76 99 9999999999999988754
No 330
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.78 E-value=7.5e-06 Score=88.86 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---C---------
Q 005273 49 QRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---M--------- 116 (704)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~--------- 116 (704)
+..+.|...+.+.+.+.++|++|+|.|.|.. | . +.|...++++.+|+.+++||.. +
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-----~-~------~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCSTRRFWE-----P-E------FEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCccC-----C-C------cCccchhHHHHHHHHcCCCEEEECCcccccccccc
Confidence 4567788888888899999999999995321 1 1 1245577899999999999853 4
Q ss_pred ----------ChhhHHHHHhcc-cc----cccccCCCeEEEEEEEeeccc
Q 005273 117 ----------LPAEAFTVVRKS-FD----ARKVLKEPKFVYTVDMDVSKL 151 (704)
Q Consensus 117 ----------~p~~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~~~~ 151 (704)
.|+.++++++.+ +| +|+.|+||+|++|+..+..++
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~ 348 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDE 348 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCccc
Confidence 589999999866 99 999999999999999998754
No 331
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.78 E-value=0.00012 Score=86.37 Aligned_cols=105 Identities=22% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..+.+.|. +|+++.+.+...
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~----------------------------------------- 505 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN----------------------------------------- 505 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC-----------------------------------------
Confidence 45799999999999999999999997 699998764310
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE-eCCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI-ENARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~-~~g~v~GV~~~~--- 372 (704)
.+ .. ....+.+++.||++++++.+.++.. +++++.+|++..
T Consensus 506 -----------------~~-----------~~-------~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 550 (654)
T PRK12769 506 -----------------MP-----------GS-------KKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRL 550 (654)
T ss_pred -----------------CC-----------CC-------HHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEe
Confidence 00 00 1123457788999999999999875 457888887631
Q ss_pred ----CCCC-----CCCceeEEecCeEEEcCCCChH
Q 005273 373 ----SKDN-----SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 373 ----~~~~-----~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.++. .+++...+.+|.||+|+|..+.
T Consensus 551 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 551 GEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred cCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 1111 0223457999999999997765
No 332
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.77 E-value=5.8e-05 Score=81.22 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 328 TDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 328 ~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
......++..|.+.+.+.|++++++++|+++..+++++++|.+.++ .+.||.||+|+|.|+..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g---------~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG---------DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC---------EEECCEEEEcCChhhhh
Confidence 3445678899999999999999999999999988888888876543 68999999999999864
No 333
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.75 E-value=0.00018 Score=86.38 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||||..|+.+|..+.+.|.+ |+|+++.....
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~----------------------------------------- 607 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEE----------------------------------------- 607 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc-----------------------------------------
Confidence 468999999999999999999999997 99998864210
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~--- 372 (704)
.+ .. .. ..+.+++.||++++++.+.++..+ ++++.+|++..
T Consensus 608 -----------------~~-------------~~----~~-e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 652 (752)
T PRK12778 608 -----------------MP-------------AR----LE-EVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMEL 652 (752)
T ss_pred -----------------CC-------------CC----HH-HHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEe
Confidence 00 00 00 113467789999999999988754 46788887631
Q ss_pred ----CCCC-----CCCceeEEecCeEEEcCCCChHH
Q 005273 373 ----SKDN-----SQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 373 ----~~~~-----~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
.++. .+++..++.+|.||+|+|..+..
T Consensus 653 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 653 GEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred cCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 1110 01233579999999999987653
No 334
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=8e-05 Score=77.74 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=84.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.+++++|||||..+++.|-.++..|.++.|+-|.+.+-..
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~---------------------------------------- 227 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG---------------------------------------- 227 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc----------------------------------------
Confidence 4789999999999999999999999999999998764100
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
| | ..+.+.+.+.++..|++++.++.++.++..++...-+....+
T Consensus 228 -----------F-------------------D--~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~---- 271 (478)
T KOG0405|consen 228 -----------F-------------------D--EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG---- 271 (478)
T ss_pred -----------h-------------------h--HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecc----
Confidence 0 0 024566677888899999999999999877654333433333
Q ss_pred CCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc
Q 005273 378 QSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV 412 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~ 412 (704)
.....|.++.|+|..++.-..-|+..|+.+.
T Consensus 272 ----~i~~vd~llwAiGR~Pntk~L~le~vGVk~~ 302 (478)
T KOG0405|consen 272 ----TIEDVDTLLWAIGRKPNTKGLNLENVGVKTD 302 (478)
T ss_pred ----ccccccEEEEEecCCCCcccccchhcceeeC
Confidence 2345899999999987643334555666554
No 335
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.75 E-value=5.7e-05 Score=81.95 Aligned_cols=41 Identities=37% Similarity=0.617 Sum_probs=38.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
...++++|||||+||++||+.|++.|++|+|+||.+.+|++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 34579999999999999999999999999999999999876
No 336
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.74 E-value=3.2e-05 Score=87.50 Aligned_cols=42 Identities=38% Similarity=0.516 Sum_probs=39.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
...++|+|||||+|||+||..|...|++|+|+|..+.+|||.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 446799999999999999999999999999999999999874
No 337
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.70 E-value=0.00027 Score=72.99 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=109.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCcccccc--ccchhHH----------HHHHhhccccccc---cc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQR--GRDIGAL----------VVRRMLEMESNFC---FG 279 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~--~~~~~~~----------~~~~~l~~~~n~~---~g 279 (704)
...+|.||||||+.|+..|..|.-+ +.+|.|+|+....+-. +..++-. ....++-.+..+. +.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4568999999999999999999877 8999999998776421 1111100 0000000000000 00
Q ss_pred cCCcccccCcchhhhhc-cCchhHHHHHHHHHHcCCCceeecCC-----------------ccccCCCChHHHHHHHHHH
Q 005273 280 EGGAGTWSDGKLVTRIG-RNSNSVLAVMNTLVHFGAPANILVDG-----------------KSHLGTDRLIPLLRNFRQH 341 (704)
Q Consensus 280 ~gG~~~~sdg~l~~~~~-~~~~~~~~~l~~l~~~G~~~~~~~~g-----------------~~~~g~~~~~~l~~~L~~~ 341 (704)
+-+..+-.-++|+.... .....+...+..-...|++.-++.++ .||.|...+..+...+.+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed 205 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED 205 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence 00011112233322221 11222333344444556665444333 2677777777788888899
Q ss_pred HHHCCCEEEeCeEEEEEEEeCCE--EEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccc
Q 005273 342 LQRLGVTIKFGTRVDDLLIENAR--IVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVP 413 (704)
Q Consensus 342 l~~~Gv~i~~~t~V~~i~~~~g~--v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~ 413 (704)
++..|..+++|-++..+...++. -.-+++.++.+ ++++.+.||-++|-++.. .....|.+..|
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~------ee~r~~~~vtc~gl~sdr---~aa~sgc~~dP 270 (453)
T KOG2665|consen 206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKG------EEKRTKNVVTCAGLQSDR---CAALSGCELDP 270 (453)
T ss_pred HHHhcccccccceeccchhccCCCCCCceEEecCcc------ceeEEeEEEEeccccHhH---HHHHhCCCCCC
Confidence 99999999999999998765542 12355555543 478999999999877642 33345666555
No 338
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.00054 Score=75.35 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC---CcEEEEEeCccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG---ADVTLIERGQAVEQ 256 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g---~~v~l~e~~~~~~~ 256 (704)
++|+|||+|++|+.+|..|.+.- ..|.|+|+....|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 68999999999999999998742 13999999987653
No 339
>PLN02411 12-oxophytodienoate reductase
Probab=97.66 E-value=1.6e-05 Score=87.42 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=60.3
Q ss_pred ccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CChhhHHHHHhcc-cc----cccccCC
Q 005273 66 LNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---MLPAEAFTVVRKS-FD----ARKVLKE 137 (704)
Q Consensus 66 ~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~p~~a~~i~~~~-~D----aR~~lad 137 (704)
++|++|+|.|.+.......+.... ..++..++++.||+.+++||+. +.|+.|+++++.+ +| +|+.|+|
T Consensus 273 ~vd~i~vs~g~~~~~~~~~~~~~~----~~~~~~~~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iad 348 (391)
T PLN02411 273 KLAYLHVTQPRYTAYGQTESGRHG----SEEEEAQLMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISN 348 (391)
T ss_pred CeEEEEecCCcccccCCCcccccC----CccchhHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 499999999965321111111111 1355667899999999999963 6799999999877 89 9999999
Q ss_pred CeEEEEEEEeec
Q 005273 138 PKFVYTVDMDVS 149 (704)
Q Consensus 138 p~~~~kv~~~~~ 149 (704)
|+|++|+..+..
T Consensus 349 Pdl~~k~~~g~~ 360 (391)
T PLN02411 349 PDLVLRFKLNAP 360 (391)
T ss_pred ccHHHHHhcCCC
Confidence 999999988753
No 340
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00082 Score=77.45 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 337 NFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 337 ~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.|...++..+++|++++.|+.|+.+++++++|.+....+. . ....+.++.||||+|+...
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~-~-~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGG-T-IETAVAAREVVLAAGAINS 267 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCC-c-eEEEecCceEEEeccccCC
Confidence 3444445557999999999999999999999998764321 0 1245678999999998764
No 341
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.64 E-value=0.00051 Score=75.13 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHH
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+...+.+.+++.||+++++++|.++. ++ .|.+.++ .++.+|.||+|+|..++.
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g--------~~i~~D~vi~a~G~~p~~ 245 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADG--------RTLPADAILWATGARAPP 245 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCC--------CEEecCEEEEccCCChhh
Confidence 45667778889999999999998874 33 4555544 379999999999988764
No 342
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.64 E-value=4.7e-05 Score=85.60 Aligned_cols=39 Identities=41% Similarity=0.624 Sum_probs=36.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~ 258 (704)
++|+|||||++||+||+.|++.| ++|+|+|+.+.+|++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 47999999999999999999988 8999999999998863
No 343
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=4.8e-05 Score=84.17 Aligned_cols=39 Identities=38% Similarity=0.510 Sum_probs=36.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
++|+|+|||.|||+||+.|+.+|++|+|+|+++.+|++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 589999999999999999999999999999999999864
No 344
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.63 E-value=8.8e-05 Score=84.62 Aligned_cols=113 Identities=26% Similarity=0.461 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..++-+|||||.-|++||..|...|.+|+|++-.+.+-.
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe----------------------------------------- 182 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME----------------------------------------- 182 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH-----------------------------------------
Confidence 345679999999999999999999999999987764310
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
..++ . .--..|++.+++.|++++++....++.. ++++.++.+.++
T Consensus 183 ------rQLD---~---------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG---- 227 (793)
T COG1251 183 ------RQLD---R---------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADG---- 227 (793)
T ss_pred ------Hhhh---h---------------------HHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecCC----
Confidence 0000 0 1225677888999999999988877765 778899999988
Q ss_pred CCceeEEecCeEEEcCCCChHHHHHHHHhCCCccc
Q 005273 378 QSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLV 412 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~ 412 (704)
..+.||.||+|+|-.+++ +.....|+.+.
T Consensus 228 ----~~i~ad~VV~a~GIrPn~--ela~~aGlavn 256 (793)
T COG1251 228 ----TEIPADLVVMAVGIRPND--ELAKEAGLAVN 256 (793)
T ss_pred ----CcccceeEEEeccccccc--HhHHhcCcCcC
Confidence 368999999999999875 44455555544
No 345
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.61 E-value=2.7e-05 Score=84.85 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=71.6
Q ss_pred CCCCCcch-hHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CChhhHH
Q 005273 47 GKQRYPSE-KKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---MLPAEAF 122 (704)
Q Consensus 47 ~~~~~~~~-~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~p~~a~ 122 (704)
.++..+.| ...+..++++.++|++|+|.|.+.. . ..+..+++++||+.+++||.. ++|+.|+
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~---------~-----~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae 307 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG---------G-----EPYSDAFREKVRARFHGVIIGAGAYTAEKAE 307 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC---------C-----ccccHHHHHHHHHHCCCCEEEeCCCCHHHHH
Confidence 34456667 6888888888999999999873211 1 134577899999999999863 5699999
Q ss_pred HHHhcc-cc----cccccCCCeEEEEEEEeec
Q 005273 123 TVVRKS-FD----ARKVLKEPKFVYTVDMDVS 149 (704)
Q Consensus 123 ~i~~~~-~D----aR~~ladp~~~~kv~~~~~ 149 (704)
++|+++ +| +|+.|+||+|++|+..+..
T Consensus 308 ~~i~~G~~D~V~~gR~~iadPd~~~k~~~g~~ 339 (362)
T PRK10605 308 TLIGKGLIDAVAFGRDYIANPDLVARLQRKAE 339 (362)
T ss_pred HHHHcCCCCEEEECHHhhhCccHHHHHhcCCC
Confidence 999877 89 9999999999999988754
No 346
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.61 E-value=8.5e-05 Score=78.50 Aligned_cols=99 Identities=23% Similarity=0.434 Sum_probs=68.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..+|.|||+||||+.+|..|.++ +.+|+|+|+.+.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG---------------------------------------- 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG---------------------------------------- 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc----------------------------------------
Confidence 34899999999999999988874 689999999987642
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEE-EEEEEeCCEEEEEEEcCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRV-DDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V-~~i~~~~g~v~GV~~~~~~~ 375 (704)
+.++|+..+ ......+++.+.+.++.....+..|..| +++...+
T Consensus 60 ------------LvRyGVAPD----------HpEvKnvintFt~~aE~~rfsf~gNv~vG~dvsl~e------------- 104 (468)
T KOG1800|consen 60 ------------LVRYGVAPD----------HPEVKNVINTFTKTAEHERFSFFGNVKVGRDVSLKE------------- 104 (468)
T ss_pred ------------eeeeccCCC----------CcchhhHHHHHHHHhhccceEEEecceecccccHHH-------------
Confidence 223343211 1112246777888787777788888777 4443321
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+-..|+||||.|+...
T Consensus 105 ------L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 105 ------LTDNYDAVVLAYGADGD 121 (468)
T ss_pred ------HhhcccEEEEEecCCCC
Confidence 12357999999998763
No 347
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.59 E-value=0.00012 Score=71.44 Aligned_cols=146 Identities=24% Similarity=0.324 Sum_probs=86.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL--GADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~--g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..||+|||+|.+||+|||..+++ ..+|.|+|..-.+|+ +.|-.+.+.....
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG---------------------------GaWLGGQLFSAMv 128 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG---------------------------GAWLGGQLFSAMV 128 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC---------------------------cccccchhhhhhh
Confidence 46999999999999999999853 578999999876653 2344444433211
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHH-HHHHHHHHHCCCEEEeCeEEEEEEEeCC-----EEEEEEE
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLL-RNFRQHLQRLGVTIKFGTRVDDLLIENA-----RIVGVKV 370 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~-~~L~~~l~~~Gv~i~~~t~V~~i~~~~g-----~v~GV~~ 370 (704)
-. ...--++.+.|+|.+-.-+ +.--..+.-+. ..|.+.|..-+|+++.-+.|++++...+ ++.||.+
T Consensus 129 vR----KPAhLFL~EigvpYedegd---YVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVT 201 (328)
T KOG2960|consen 129 VR----KPAHLFLQEIGVPYEDEGD---YVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVT 201 (328)
T ss_pred hc----ChHHHHHHHhCCCcccCCC---EEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEe
Confidence 00 0011256677887542111 11011112233 3444555555899888888899887633 4556554
Q ss_pred c------CCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 371 S------DSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 371 ~------~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+ +...+..-+...+++..||-+||+-+.
T Consensus 202 NWtLV~qnHgtQsCMDPNviea~~vvS~tGHDGP 235 (328)
T KOG2960|consen 202 NWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGP 235 (328)
T ss_pred eeEEeeeccCccccCCCCeeeEEEEEEccCCCCC
Confidence 2 221111222346889999999998653
No 348
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.56 E-value=0.00057 Score=83.39 Aligned_cols=145 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
..++|+|||||..|+.+|..+.+.|.+|+++.+..... |
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~------------------------------m----------- 484 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSE------------------------------M----------- 484 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccc------------------------------c-----------
Confidence 46899999999999999999999999999998763210 0
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC--CEEEEEEEcC---
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN--ARIVGVKVSD--- 372 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~--g~v~GV~~~~--- 372 (704)
| .....+ +.+.+.|+++++++.+.++..++ +++.++++..
T Consensus 485 -----------------p-----------------a~~~e~-~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l 529 (944)
T PRK12779 485 -----------------P-----------------ARVEEL-HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNEL 529 (944)
T ss_pred -----------------c-----------------ccHHHH-HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEe
Confidence 0 001111 22346799999999999987653 3677765421
Q ss_pred ----CCCC----CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCc----------------ccccceeeEEEEecchhh
Q 005273 373 ----SKDN----SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNIN----------------LVPKDFAVGLRMEHPQEL 428 (704)
Q Consensus 373 ----~~~~----~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~----------------l~~~~~avG~~~~~p~~~ 428 (704)
.++. .+++...+.||.||+|.|-.+..... ....++. -.+..|+.|+....+...
T Consensus 530 ~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~v 608 (944)
T PRK12779 530 GEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTA 608 (944)
T ss_pred ccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHH
Confidence 1110 02234679999999999987654321 1111221 124578888877655555
Q ss_pred hcccccccchh
Q 005273 429 INSIQYSELAT 439 (704)
Q Consensus 429 ~~~~~~~~l~~ 439 (704)
+.++..+..++
T Consensus 609 v~Ai~eGr~AA 619 (944)
T PRK12779 609 IRAAGDGQAAA 619 (944)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 349
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.52 E-value=0.0012 Score=81.51 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=73.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGR 297 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~ 297 (704)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 5799999999999999999999995 58888765421
Q ss_pred CchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 298 NSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 298 ~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
...+.+.+++.||++++++.|+++.- ++++.+|++....+
T Consensus 354 -------------------------------------~~~l~~~L~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g-- 393 (985)
T TIGR01372 354 -------------------------------------SPEARAEARELGIEVLTGHVVAATEG-GKRVSGVAVARNGG-- 393 (985)
T ss_pred -------------------------------------hHHHHHHHHHcCCEEEcCCeEEEEec-CCcEEEEEEEecCC--
Confidence 11244567889999999999998854 45677777763111
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+..++.+|.|+++.|..++.
T Consensus 394 --~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 394 --AGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred --ceEEEECCEEEEcCCcCchh
Confidence 12579999999999998864
No 350
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.51 E-value=0.00077 Score=81.54 Aligned_cols=148 Identities=21% Similarity=0.306 Sum_probs=90.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-C-CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAEL-G-ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~-g-~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
..++|+|||||..|+.+|..+.+. | .+|+++.+..... +
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~--------------M------------------------- 707 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE--------------M------------------------- 707 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc--------------c-------------------------
Confidence 468999999999999999998887 4 3899998874210 0
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEc----
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVS---- 371 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~---- 371 (704)
+ .....+ +.+.+.||++++++.+..+.. ++++......
T Consensus 708 -------------------P-----------------A~~eEl-e~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~ 749 (1019)
T PRK09853 708 -------------------P-----------------AWREEY-EEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEP 749 (1019)
T ss_pred -------------------c-----------------ccHHHH-HHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecc
Confidence 0 000111 222357999999988888753 4443322111
Q ss_pred CCCCC----CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc---------------cccceeeEEEEecchhhhccc
Q 005273 372 DSKDN----SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL---------------VPKDFAVGLRMEHPQELINSI 432 (704)
Q Consensus 372 ~~~~~----~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l---------------~~~~~avG~~~~~p~~~~~~~ 432 (704)
+..+. ..++...+.+|.||+|+|..++. ..+...|+.+ .+..|++|+....|.....++
T Consensus 750 d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt--elle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai 827 (1019)
T PRK09853 750 DESGRRRPVETGETVTLEADTVITAIGEQVDT--ELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAI 827 (1019)
T ss_pred cCCCceEEeeCCCeEEEEeCEEEECCCCcCCh--hHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHH
Confidence 00000 01123679999999999988753 2333333322 145788888776676666666
Q ss_pred ccccchhhhccc
Q 005273 433 QYSELATEVQKG 444 (704)
Q Consensus 433 ~~~~l~~e~~~g 444 (704)
..+..++..+.+
T Consensus 828 ~qGr~AA~nI~~ 839 (1019)
T PRK09853 828 ADARRAADAILS 839 (1019)
T ss_pred HHHHHHHHHHhh
Confidence 655555544433
No 351
>PLN02576 protoporphyrinogen oxidase
Probab=97.50 E-value=0.00011 Score=84.03 Aligned_cols=41 Identities=39% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEEeCccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAEL-GADVTLIERGQAVEQRG 258 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~-g~~v~l~e~~~~~~~~~ 258 (704)
..++|+|||||++||+||+.|++. |++|+|+|+.+.+|++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 356899999999999999999999 99999999999999864
No 352
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.48 E-value=0.00063 Score=80.27 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
..++|+|||+|..|+.+|..+.+.|. +|+|+.+..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 599998764
No 353
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.48 E-value=0.00069 Score=74.65 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHH
Q 005273 327 GTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDI 400 (704)
Q Consensus 327 g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~ 400 (704)
+.-....++..|.+.+++ |++++++++|+++..+++. +.|++.++ ..+.||.||+|+|.|+..+
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g--------~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANG--------EVIAASVVVLANGAQAGQL 193 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCC--------CEEEcCEEEEcCCcccccc
Confidence 344556788999999988 9999999999999877665 45665544 2589999999999998643
No 354
>PLN02268 probable polyamine oxidase
Probab=97.47 E-value=0.00011 Score=82.38 Aligned_cols=39 Identities=36% Similarity=0.556 Sum_probs=36.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
.+|+|||||.+||+||+.|.+.|++|+|+|+.+.+|++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 379999999999999999999999999999999999875
No 355
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.43 E-value=0.00013 Score=82.36 Aligned_cols=40 Identities=35% Similarity=0.526 Sum_probs=36.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEEeCccccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL----GADVTLIERGQAVEQRG 258 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~----g~~v~l~e~~~~~~~~~ 258 (704)
.+||+|||||++||+||+.|+++ |++|+|+|+.+.+|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 36899999999999999999998 99999999999998763
No 356
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.43 E-value=0.001 Score=77.06 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..++|+|||||+.|+++|..|++.|.+|+++++++.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 357999999999999999999999999999998753
No 357
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00026 Score=73.68 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=78.8
Q ss_pred CCCCccCCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccc
Q 005273 207 GSEGLYNYPRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTW 286 (704)
Q Consensus 207 ~~~~~~~~~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~ 286 (704)
.+.+.+.+|.. +-+-+|||+|..+|+||-.|+-.|+.|++.-|+-.+.+
T Consensus 187 TSDDlFsl~~~-PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG------------------------------ 235 (503)
T KOG4716|consen 187 TSDDLFSLPYE-PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG------------------------------ 235 (503)
T ss_pred cccccccccCC-CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc------------------------------
Confidence 45555555544 45678999999999999999999999999988755421
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEE
Q 005273 287 SDGKLVTRIGRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIV 366 (704)
Q Consensus 287 sdg~l~~~~~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~ 366 (704)
-| +++.+.+.+.+++.|++|...+....++..+++-.
T Consensus 236 -----------------------------------------FD--qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l 272 (503)
T KOG4716|consen 236 -----------------------------------------FD--QDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL 272 (503)
T ss_pred -----------------------------------------cc--HHHHHHHHHHHHHhCCceeecccceeeeeccCCcE
Confidence 00 13566677888899999988877777765443323
Q ss_pred EEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 367 GVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 367 GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
-|...+..++ +...-..|.|++|.|..+.
T Consensus 273 ~v~~k~t~t~---~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 273 RVFYKNTNTG---EEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred EEEeeccccc---ccccchhhhhhhhhccccc
Confidence 3443332211 1123457999999998764
No 358
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0018 Score=68.90 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=77.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.++|+|||||-+.+..|+.|++-+.+|+|+-|.+...
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r------------------------------------------- 179 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR------------------------------------------- 179 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-------------------------------------------
Confidence 5699999999999999999999999999998886531
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
-...+.+.++++ ++++++++.+.++.-++ +.+|++.+..+
T Consensus 180 -----------------------------------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~-- 220 (305)
T COG0492 180 -----------------------------------AEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKG-- 220 (305)
T ss_pred -----------------------------------cCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCC--
Confidence 013345566666 89999999999987654 77888887531
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+...+..|.|+++.|..+..
T Consensus 221 --~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 221 --EEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred --ceEEEEeceEEEecCCCCch
Confidence 24578999999999998864
No 359
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.41 E-value=0.00073 Score=79.58 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..+.+.|. +|+++.+.+...-
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~---------------------------------------- 489 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSM---------------------------------------- 489 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccC----------------------------------------
Confidence 46899999999999999999888895 7999988643200
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~--- 372 (704)
+ .. ...+ ..+++.||+|++++.++++..+ ++++.+|.+..
T Consensus 490 ------------------~-----------~~--~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 533 (639)
T PRK12809 490 ------------------P-----------GS--RKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAM 533 (639)
T ss_pred ------------------C-----------CC--HHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEe
Confidence 0 00 0011 2346789999999999998754 57788775421
Q ss_pred C----CCC-----CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc
Q 005273 373 S----KDN-----SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL 411 (704)
Q Consensus 373 ~----~~~-----~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l 411 (704)
+ ++. ..++...+.+|.||+|.|..+.+. .++...++.+
T Consensus 534 ~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~-~~~~~~gl~~ 580 (639)
T PRK12809 534 GEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAM-PWLQGSGIKL 580 (639)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECcCCCCCcc-ccccccCccc
Confidence 1 110 012346799999999999766432 2334444443
No 360
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.40 E-value=0.0024 Score=70.84 Aligned_cols=65 Identities=18% Similarity=0.344 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC---C-EEEEEEEcCCCCCCCCceeEEe-cCeEEEcCCCC
Q 005273 329 DRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN---A-RIVGVKVSDSKDNSQSDIQKLG-FDAVILAVGHS 396 (704)
Q Consensus 329 ~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~---g-~v~GV~~~~~~~~~~~~~~~i~-Ad~VVlAtG~~ 396 (704)
++...++.-|.+.|+++||+++++++|++|..+. . .+..+.+...+.. ....+. -|.|++..|+-
T Consensus 204 NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~---~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 204 NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKE---ETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCe---eEEEeCCCCEEEEECCcc
Confidence 3445688999999999999999999999998862 2 3455655432211 112333 46777777864
No 361
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.40 E-value=0.00022 Score=84.57 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=39.6
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
+....++|+|||||++||.||+.|+++|++|+|+|+...+|++.
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 44556899999999999999999999999999999999998763
No 362
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.35 E-value=0.00078 Score=73.78 Aligned_cols=107 Identities=25% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG--ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
.++|||||||.+|+.+|..|.+.- .+|+|+|+.+.---. +.+...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------------------------------plL~ev-- 49 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------------------------------PLLYEV-- 49 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------------------------------hhhhhh--
Confidence 478999999999999999999974 889999998642100 000000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
.. |+-....+.-.+++.++..+ ++++.+ +|++|..+..+ |.+.+.
T Consensus 50 --------------a~--------------g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~---V~~~~~-- 95 (405)
T COG1252 50 --------------AT--------------GTLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAKK---VTLADL-- 95 (405)
T ss_pred --------------hc--------------CCCChhheeccHHHHhcccCceEEEEE-EEEEEcccCCE---EEeCCC--
Confidence 00 11111224445556666555 777754 68999887764 445552
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+.+|.+|+|+|+...
T Consensus 96 ------~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 96 ------GEISYDYLVVALGSETN 112 (405)
T ss_pred ------ccccccEEEEecCCcCC
Confidence 36999999999998764
No 363
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0041 Score=65.03 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=33.9
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
..+..+|.+|||||.+||+||-.++..|.+|.++|--.
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 34567999999999999999999999999999998643
No 364
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0013 Score=68.97 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
-+.+||+|||||-+|++||+.||---.+|+|+|=.+.+.
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk----------------------------------------- 390 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK----------------------------------------- 390 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-----------------------------------------
Confidence 457899999999999999999997767899999776531
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
--..|++++.++ +++|..|..-+++.-++++|.|+...+...
T Consensus 391 -------------------------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~s 433 (520)
T COG3634 391 -------------------------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVS 433 (520)
T ss_pred -------------------------------------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccC
Confidence 113455667666 799999999999988778999999887643
Q ss_pred CCCCceeEEecCeEEEcCCCChHH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
+ +...+.-+-|++-.|--++.
T Consensus 434 g---e~~~l~LeGvFVqIGL~PNT 454 (520)
T COG3634 434 G---EEHHLELEGVFVQIGLLPNT 454 (520)
T ss_pred C---ceeEEEeeeeEEEEecccCh
Confidence 2 34566677888888877653
No 365
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.33 E-value=0.0017 Score=79.01 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=88.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAEL-GA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~-g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
..++|+|||||..|+.+|..+.+. |. +|+++.+..... +
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~--------------M------------------------- 705 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY--------------M------------------------- 705 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc--------------c-------------------------
Confidence 468999999999999999998886 75 799998864210 0
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEc----
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVS---- 371 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~---- 371 (704)
+ .....+ +.+.+.||++++.+.+..+. ++++......
T Consensus 706 -------------------p-----------------a~~eEl-~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~ 746 (1012)
T TIGR03315 706 -------------------P-----------------ASREEL-EEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEP 746 (1012)
T ss_pred -------------------c-----------------cCHHHH-HHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecc
Confidence 0 000111 22335799999988887775 4544332221
Q ss_pred CCCCC----CCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcc----------------cccceeeEEEEecchhhhcc
Q 005273 372 DSKDN----SQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINL----------------VPKDFAVGLRMEHPQELINS 431 (704)
Q Consensus 372 ~~~~~----~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l----------------~~~~~avG~~~~~p~~~~~~ 431 (704)
+..+. .+++...+.+|.||+|+|..+.. ..+...++.+ .+..|++|+....|.....+
T Consensus 747 d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt--~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~A 824 (1012)
T TIGR03315 747 DASGRRRPVGTGETVDLPADTVIAAVGEQVDT--DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEA 824 (1012)
T ss_pred cCCCceeeecCCCeEEEEeCEEEEecCCcCCh--HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHH
Confidence 10000 01234579999999999987653 2333344332 14577888876666666666
Q ss_pred cccccchhhhc
Q 005273 432 IQYSELATEVQ 442 (704)
Q Consensus 432 ~~~~~l~~e~~ 442 (704)
+..+..++..+
T Consensus 825 IaqGr~AA~nI 835 (1012)
T TIGR03315 825 IADGRKAANAI 835 (1012)
T ss_pred HHHHHHHHHHH
Confidence 66555554443
No 366
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.30 E-value=0.0019 Score=79.48 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
.+++|+|||||..|+.+|..+.+.|.+ |+++.+.....
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e----------------------------------------- 608 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE----------------------------------------- 608 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc-----------------------------------------
Confidence 468999999999999999999999985 77776543210
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEE-eCCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLI-ENARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~-~~g~v~GV~~~~--- 372 (704)
.+ . . ....+.+++.||++++++.+.++.. +++++.+|++..
T Consensus 609 -----------------m~-------------a----~-~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l 653 (1006)
T PRK12775 609 -----------------AP-------------A----R-IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMEL 653 (1006)
T ss_pred -----------------CC-------------C----C-HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEe
Confidence 00 0 0 0112346678999999999999875 357888887642
Q ss_pred ----CCCC----CCCceeEEecCeEEEcCCCChHH
Q 005273 373 ----SKDN----SQSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 373 ----~~~~----~~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
..+. .+++...+.+|.||+|.|..++.
T Consensus 654 ~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 654 GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred cccCCCCCccccCCCceEEEEcCEEEECCCcCCCh
Confidence 1110 01233579999999999987653
No 367
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.30 E-value=0.00021 Score=80.80 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=35.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc------CCcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAEL------GADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~------g~~v~l~e~~~~~~~~~ 258 (704)
++|+|||||++||+||+.|++. |++|+|+|+.+.+|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 5799999999999999999986 37899999999999864
No 368
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.27 E-value=0.0019 Score=73.17 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..+.+.|. +|+|+++.+...-
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~---------------------------------------- 320 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANM---------------------------------------- 320 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccC----------------------------------------
Confidence 46799999999999999999999996 6999998753200
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcC---
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSD--- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~--- 372 (704)
+ .. ....+.+++.||++++++.+.++..+ ++++.+|++..
T Consensus 321 ------------------~-----------~~-------~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 364 (467)
T TIGR01318 321 ------------------P-----------GS-------RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTAL 364 (467)
T ss_pred ------------------C-----------CC-------HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEe
Confidence 0 00 01123456789999999999998654 56787776531
Q ss_pred ----CCCC-----CCCceeEEecCeEEEcCCCCh
Q 005273 373 ----SKDN-----SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 373 ----~~~~-----~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.++. .+++...+.+|.||+|+|..+
T Consensus 365 ~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 365 GEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred cccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 1110 012345799999999999765
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.0012 Score=75.22 Aligned_cols=34 Identities=44% Similarity=0.601 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++|+|||+|++|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999999999999999999999998764
No 370
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.21 E-value=0.0012 Score=71.68 Aligned_cols=142 Identities=24% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhh
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGA--DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTR 294 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~--~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~ 294 (704)
...++|+|||||.++.+.+..|.+.+. +|+++-|+...-... .+.+ ...|-+++.+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d--------------~s~f------~ne~f~P~~v~~ 247 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD--------------DSPF------VNEIFSPEYVDY 247 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------CC------HHGGGSHHHHHH
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc--------------cccc------hhhhcCchhhhh
Confidence 456899999999999999999999875 799999886432110 0000 001122222222
Q ss_pred hccCchhH-HHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHH-----H-HCCCEEEeCeEEEEEEEeCCEEEE
Q 005273 295 IGRNSNSV-LAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHL-----Q-RLGVTIKFGTRVDDLLIENARIVG 367 (704)
Q Consensus 295 ~~~~~~~~-~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l-----~-~~Gv~i~~~t~V~~i~~~~g~v~G 367 (704)
+-...... ...++.... . .+ ..-..++++.|.+.+ . +..++++.+++|+++...++.-+.
T Consensus 248 f~~l~~~~R~~~l~~~~~--~----ny-------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~ 314 (341)
T PF13434_consen 248 FYSLPDEERRELLREQRH--T----NY-------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR 314 (341)
T ss_dssp HHTS-HHHHHHHHHHTGG--G----TS-------SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE
T ss_pred hhcCCHHHHHHHHHHhHh--h----cC-------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE
Confidence 21111111 111111110 0 00 011123444443333 1 224899999999999888732234
Q ss_pred EEEcCCCCCCCCceeEEecCeEEEcCC
Q 005273 368 VKVSDSKDNSQSDIQKLGFDAVILAVG 394 (704)
Q Consensus 368 V~~~~~~~~~~~~~~~i~Ad~VVlAtG 394 (704)
+.+.+... ++...+.+|.||+|||
T Consensus 315 l~~~~~~~---~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 315 LTLRHRQT---GEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEETTT-----EEEEEESEEEE---
T ss_pred EEEEECCC---CCeEEEecCEEEEcCC
Confidence 55555322 2356899999999999
No 371
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.19 E-value=0.00039 Score=76.09 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=35.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 58999999999999999999999999999999888764
No 372
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.19 E-value=0.0039 Score=71.06 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~ 253 (704)
..++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 46899999999999999888888775 6999998764
No 373
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.18 E-value=0.00024 Score=76.63 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHH
Q 005273 48 KQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFT 123 (704)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~ 123 (704)
++-.+.|...+..+.++.++|.++++.|.+.......+.... ..+++.++.+.|++.+++|+.. +. |+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~----~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~ 298 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYV----PEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEE 298 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCC----CcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHH
Confidence 445678889999999999999999999975432221211111 1367788999999999999963 65 999999
Q ss_pred HHhc-ccc----cccccCCCeEEEEEEE
Q 005273 124 VVRK-SFD----ARKVLKEPKFVYTVDM 146 (704)
Q Consensus 124 i~~~-~~D----aR~~ladp~~~~kv~~ 146 (704)
+++. ++| +|..|+||+|++|+..
T Consensus 299 ~l~~g~aD~V~igR~~ladP~l~~k~~~ 326 (327)
T cd02803 299 ILAEGKADLVALGRALLADPDLPNKARE 326 (327)
T ss_pred HHHCCCCCeeeecHHHHhCccHHHHHhc
Confidence 9977 599 9999999999987654
No 374
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.14 E-value=0.00016 Score=86.89 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=74.6
Q ss_pred ccCCCCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hh
Q 005273 44 KRTGKQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PA 119 (704)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~ 119 (704)
+-..++-.+.|...+.++.++.++|++++|.|.+.... .| .. ..+++.++++.||+.+++||+. |. |+
T Consensus 629 ~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~-~~-----~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~ 700 (765)
T PRK08255 629 DWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE--KP-VY-----GRMYQTPFADRIRNEAGIATIAVGAISEAD 700 (765)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC--CC-Cc-----CccccHHHHHHHHHHcCCEEEEeCCCCCHH
Confidence 43444566778889999999999999999999643211 11 11 1477789999999999999964 54 99
Q ss_pred hHHHHHhcc-cc----cccccCCCeEEEEEEEee
Q 005273 120 EAFTVVRKS-FD----ARKVLKEPKFVYTVDMDV 148 (704)
Q Consensus 120 ~a~~i~~~~-~D----aR~~ladp~~~~kv~~~~ 148 (704)
.++++++++ +| +|..|+||+|+.|....+
T Consensus 701 ~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~ 734 (765)
T PRK08255 701 HVNSIIAAGRADLCALARPHLADPAWTLHEAAEI 734 (765)
T ss_pred HHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHc
Confidence 999999776 99 999999999988765443
No 375
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.13 E-value=0.00038 Score=72.97 Aligned_cols=42 Identities=36% Similarity=0.518 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRD 260 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~ 260 (704)
...+|+|||+|++||+||+.|+++ ++|+|||.+..+|++...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 357899999999999999999986 799999999999987543
No 376
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.08 E-value=0.00023 Score=77.11 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCCCcchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---C-ChhhHHH
Q 005273 48 KQRYPSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---M-LPAEAFT 123 (704)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~-~p~~a~~ 123 (704)
.+..+.|...+.+..++.++|.++++.|.+...+. .|. ..+++.++.+.|++.+++||.. + .|+.+++
T Consensus 236 ~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~-~~~-------~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 236 GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-IPV-------GPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEA 307 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc-cCC-------CccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 45568888899999999999999999986532221 121 1356788999999999999963 5 4999999
Q ss_pred HHhcc-cc----cccccCCCeEEEEEE
Q 005273 124 VVRKS-FD----ARKVLKEPKFVYTVD 145 (704)
Q Consensus 124 i~~~~-~D----aR~~ladp~~~~kv~ 145 (704)
+++.+ +| +|+.|+||+|++|+.
T Consensus 308 ~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 308 ILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 99877 89 999999999988764
No 377
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.03 E-value=0.003 Score=70.27 Aligned_cols=59 Identities=25% Similarity=0.256 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+.+.|.+.+++.|++++++++|.++..+++++..+...++. ...+.||.||+|+|++..
T Consensus 261 L~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~------~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 261 LQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG------DIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc------eEEEECCEEEEeCCCccc
Confidence 66778888989999999999999998888877776644332 247999999999998753
No 378
>PLN02568 polyamine oxidase
Probab=96.98 E-value=0.0008 Score=77.36 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=36.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-----CcEEEEEeCccccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG-----ADVTLIERGQAVEQRG 258 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g-----~~v~l~e~~~~~~~~~ 258 (704)
.++|+|||||++||+||..|++.| ++|+|+|+...+|++.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 468999999999999999999887 8999999999998863
No 379
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00089 Score=73.12 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGR 259 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~ 259 (704)
...+|+|||+|.+||.||+.|.+.|++|+|+|..+.+|+|..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 367999999999999999999999999999999999998753
No 380
>PLN02676 polyamine oxidase
Probab=96.87 E-value=0.0012 Score=75.27 Aligned_cols=41 Identities=34% Similarity=0.550 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRG 258 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~ 258 (704)
..++|+|||||++||.||+.|++.|+ +|+|+|+...+|++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 35799999999999999999999998 599999999988864
No 381
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.86 E-value=0.008 Score=69.88 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
..++|+|||+|..|+.+|..+.+.| .+|+|+.+.+...-
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~---------------------------------------- 305 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM---------------------------------------- 305 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC----------------------------------------
Confidence 3679999999999999999888888 56888877643100
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcC----
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSD---- 372 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~---- 372 (704)
+ . . ....+.+.+.|+++++++.+.++..++++..++++..
T Consensus 306 ------------------~------------~-----~-~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~ 349 (564)
T PRK12771 306 ------------------P------------A-----H-DEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKM 349 (564)
T ss_pred ------------------C------------C-----C-HHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEec
Confidence 0 0 0 0112234568999999999999976654444654311
Q ss_pred ---CCCC---CCCceeEEecCeEEEcCCCChH
Q 005273 373 ---SKDN---SQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 373 ---~~~~---~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
..+. ..++..++.+|.||+|+|..+.
T Consensus 350 ~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 350 ELDEDGRPSPVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred ccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence 1110 0223468999999999998764
No 382
>PRK13984 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0098 Score=69.74 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=39.5
Q ss_pred HHCCCEEEeCeEEEEEEEeCCEEEEEEEcC------CCCC-----CCCceeEEecCeEEEcCCCCh
Q 005273 343 QRLGVTIKFGTRVDDLLIENARIVGVKVSD------SKDN-----SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 343 ~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~------~~~~-----~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.+.||++++++.+.++..+++++.+|++.. .++. .+++...+.+|.||+|+|..+
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 457999999999988877778888887642 1110 012235799999999999765
No 383
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.76 E-value=0.0049 Score=68.65 Aligned_cols=34 Identities=50% Similarity=0.743 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.+||+|||+|++|+.+|+.|++.|.+|+|+|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999874
No 384
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.71 E-value=0.002 Score=67.10 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=36.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
+|++|||+|.+|+..|..|++.|++|.|+||.+.+|+..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 689999999999999999999999999999999998764
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.66 E-value=0.006 Score=65.94 Aligned_cols=60 Identities=17% Similarity=0.391 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHH
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYE 402 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~ 402 (704)
+++.-.+++.+.|+++..++.|.++.-++ +.+.+.++ +...|..-.+|.|||..++....
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~~~-----I~~~~~~g----~~~~iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTEKT-----IHAKTKDG----EIEEIPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecCcE-----EEEEcCCC----ceeeecceEEEecCCCCCchhhh
Confidence 56666777888899999999998874322 33333322 24678899999999988765433
No 386
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.65 E-value=0.0051 Score=66.48 Aligned_cols=42 Identities=50% Similarity=0.572 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcE--EEEEeCccccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADV--TLIERGQAVEQRG 258 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v--~l~e~~~~~~~~~ 258 (704)
...++|+|||||++||.+|++|++++-+| +|+|+.+.+|+.-
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 34689999999999999999999998765 5699999988643
No 387
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.02 Score=60.35 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
...+|.+|||||-.|+.+|..++..|.+|.|+|..-.+|+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT 58 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT 58 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce
Confidence 34789999999999999999999999999999988666553
No 388
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.55 E-value=0.0027 Score=69.50 Aligned_cols=41 Identities=32% Similarity=0.491 Sum_probs=36.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcccccccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQAVEQRGR 259 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~~~~~~~ 259 (704)
..+|+|||||.|||.||..|.+.|. +|+|+|..+.+|+|..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 4589999999999999999997765 7999999999998853
No 389
>PLN03000 amine oxidase
Probab=96.50 E-value=0.0033 Score=74.96 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
...+|+|||||++||.||..|++.|++|+|+|+.+.+|++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 45799999999999999999999999999999999998864
No 390
>PLN02976 amine oxidase
Probab=96.39 E-value=0.0049 Score=76.12 Aligned_cols=44 Identities=34% Similarity=0.497 Sum_probs=39.4
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
+....++|+|||+|++|+.+|+.|++.|++|+|||+.+.+|++.
T Consensus 689 ~~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 689 DSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CcCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 44556899999999999999999999999999999998888753
No 391
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.32 E-value=0.057 Score=61.75 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEEeCccc
Q 005273 216 RTRKPKVAVVGGGPSGLFASLVLAEL-GADVTLIERGQAV 254 (704)
Q Consensus 216 ~~~~~~v~vvG~G~aGl~aA~~l~~~-g~~v~l~e~~~~~ 254 (704)
....+|.+|||||-||+..|-.|++. ..+|+|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999986 4699999999765
No 392
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.25 E-value=0.015 Score=63.92 Aligned_cols=106 Identities=23% Similarity=0.398 Sum_probs=70.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA--DVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~--~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...++|||+|++|..|+..+.+.|. +++++-+....-. ...+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~py------------------------------dr~~------ 117 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPY------------------------------DRAR------ 117 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcc------------------------------cchh------
Confidence 4689999999999999999999885 5777765543210 0000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDN 376 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~ 376 (704)
+.....+.+++ +.....+..++.|+++++++.|+.+...+. .+.+.++
T Consensus 118 ----------------------Ls~~~~~~~~~----~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K---~l~~~~G--- 165 (478)
T KOG1336|consen 118 ----------------------LSKFLLTVGEG----LAKRTPEFYKEKGIELILGTSVVKADLASK---TLVLGNG--- 165 (478)
T ss_pred ----------------------cccceeecccc----ccccChhhHhhcCceEEEcceeEEeecccc---EEEeCCC---
Confidence 00000001111 112223456789999999999999988765 3555555
Q ss_pred CCCceeEEecCeEEEcCCCCh
Q 005273 377 SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 377 ~~~~~~~i~Ad~VVlAtG~~s 397 (704)
+++..+.+|||||..+
T Consensus 166 -----e~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 166 -----ETLKYSKLIIATGSSA 181 (478)
T ss_pred -----ceeecceEEEeecCcc
Confidence 5799999999999955
No 393
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.025 Score=63.84 Aligned_cols=34 Identities=44% Similarity=0.579 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999874
No 394
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.04 Score=54.71 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=75.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhccC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIGRN 298 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~~~ 298 (704)
.+-.+|||||-+.++-|..|.+.+.+|.++-|.+...
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------------------------------------------- 193 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------------------------------------------- 193 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh-------------------------------------------
Confidence 5678999999999999999999999999999886531
Q ss_pred chhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHC-CCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCC
Q 005273 299 SNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRL-GVTIKFGTRVDDLLIENARIVGVKVSDSKDNS 377 (704)
Q Consensus 299 ~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~-Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~ 377 (704)
-.+.|++++++. ++++++|+.+.+..-+.+.+-++++.+-+.
T Consensus 194 -----------------------------------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~t-- 236 (322)
T KOG0404|consen 194 -----------------------------------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKT-- 236 (322)
T ss_pred -----------------------------------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEeccc--
Confidence 224455566555 789999998877655545556676665432
Q ss_pred CCceeEEecCeEEEcCCCChHH
Q 005273 378 QSDIQKLGFDAVILAVGHSARD 399 (704)
Q Consensus 378 ~~~~~~i~Ad~VVlAtG~~s~~ 399 (704)
++...+..+-++.|.|+.+..
T Consensus 237 -ge~~dl~v~GlFf~IGH~Pat 257 (322)
T KOG0404|consen 237 -GEETDLPVSGLFFAIGHSPAT 257 (322)
T ss_pred -CcccccccceeEEEecCCchh
Confidence 234578999999999999864
No 395
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.96 E-value=0.016 Score=62.47 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHHHHHH-HH--HHCCCEEEeCeEEEEEEE-------eCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 334 LLRNFRQ-HL--QRLGVTIKFGTRVDDLLI-------ENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 334 l~~~L~~-~l--~~~Gv~i~~~t~V~~i~~-------~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+...|.. ++ +...|++...+++.++.+ +++-+.-+.+.++ ..+..|.+|-|.|..+.
T Consensus 152 Iq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg--------~~~~~~LLigAdg~Ns~ 218 (481)
T KOG3855|consen 152 IQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDG--------INFATDLLIGADGFNSV 218 (481)
T ss_pred HHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccC--------ceeeeceeeccccccch
Confidence 4455553 33 234799999999888765 2455666666665 47889999999998874
No 396
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.035 Score=62.82 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
+|+|||.|++|+++|..|+++|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 397
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.68 E-value=0.056 Score=62.47 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=71.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH---cCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhh
Q 005273 219 KPKVAVVGGGPSGLFASLVLAE---LGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRI 295 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~---~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~ 295 (704)
..+++|||.|++|..+.-.+.+ .-+.|+++-..+.+..+- ..+...
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R------------------------------i~Ls~v- 51 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR------------------------------ILLSSV- 51 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc------------------------------eeeccc-
Confidence 3579999999999988887777 345789886665542110 000000
Q ss_pred ccCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 296 GRNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 296 ~~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
..+.....++.-.-..+.+++||+++.+.+|+.|...+. .|+...+
T Consensus 52 -----------------------------l~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k---~V~t~~g-- 97 (793)
T COG1251 52 -----------------------------LAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANK---VVTTDAG-- 97 (793)
T ss_pred -----------------------------cCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcc---eEEccCC--
Confidence 001111223333445677889999999999999976553 3444444
Q ss_pred CCCCceeEEecCeEEEcCCCCh
Q 005273 376 NSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.++..|.+|+|||+++
T Consensus 98 ------~~~~YDkLilATGS~p 113 (793)
T COG1251 98 ------RTVSYDKLIIATGSYP 113 (793)
T ss_pred ------cEeecceeEEecCccc
Confidence 5789999999999987
No 398
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.66 E-value=0.059 Score=58.32 Aligned_cols=150 Identities=20% Similarity=0.194 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
...|++.||-||+-|..|..|...+ .++..+||.+... |..+++-++++++...- .+|++...
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~---------WHpGmllegstlQv~Fl-------kDLVTl~~ 67 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS---------WHPGMLLEGSTLQVPFL-------KDLVTLVD 67 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC---------cCCCcccCCccccccch-------hhhccccC
Confidence 3579999999999999999998865 7899999987641 12222323333221100 01111110
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCCCEEEeCeEEEEEEEeC-CEEEE--EEEcCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLGVTIKFGTRVDDLLIEN-ARIVG--VKVSDS 373 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~-g~v~G--V~~~~~ 373 (704)
-. .....++.+.+.|--...+.-+.-++.......++++.... . -.++++++|++|...+ +.... +++.++
T Consensus 68 PT--s~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~---l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~ 141 (436)
T COG3486 68 PT--SPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQ---L-PSLRFGEEVTDISSLDGDAVVRLFVVTANG 141 (436)
T ss_pred CC--CchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhh---C-CccccCCeeccccccCCcceeEEEEEcCCC
Confidence 00 11223344444431111111111222222222233333332 2 5688999999774332 22222 333332
Q ss_pred CCCCCCceeEEecCeEEEcCCCCh
Q 005273 374 KDNSQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 374 ~~~~~~~~~~i~Ad~VVlAtG~~s 397 (704)
..+.|+.||+++|..+
T Consensus 142 --------~~y~ar~lVlg~G~~P 157 (436)
T COG3486 142 --------TVYRARNLVLGVGTQP 157 (436)
T ss_pred --------cEEEeeeEEEccCCCc
Confidence 3799999999999876
No 399
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.42 E-value=0.023 Score=64.27 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
..++|+|||+|.+|+..|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 46899999999999999999999999999998864
No 400
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.32 E-value=0.21 Score=56.85 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCCEEEeCeEEEEEEEe---CCEEEEEEEcCC-------CCC----CCCceeEEecCeEEEcCCCCh
Q 005273 345 LGVTIKFGTRVDDLLIE---NARIVGVKVSDS-------KDN----SQSDIQKLGFDAVILAVGHSA 397 (704)
Q Consensus 345 ~Gv~i~~~t~V~~i~~~---~g~v~GV~~~~~-------~~~----~~~~~~~i~Ad~VVlAtG~~s 397 (704)
.+++|+|...-.+|+.. +++|.++++... .+. .+++...+.+|.||.|.|..+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 47899999888888742 268999887521 111 134556899999999999763
No 401
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.28 E-value=0.52 Score=52.65 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
..+||+|+|.|..-.-.|.+|++.|.+|+.+|+++.-|+..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 36899999999999888889999999999999999888754
No 402
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.12 E-value=0.021 Score=62.42 Aligned_cols=73 Identities=32% Similarity=0.425 Sum_probs=54.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc-----CCcEEEEEeCccccccccchhHH--HHHHhhccccccccccCCcccccCcch
Q 005273 219 KPKVAVVGGGPSGLFASLVLAEL-----GADVTLIERGQAVEQRGRDIGAL--VVRRMLEMESNFCFGEGGAGTWSDGKL 291 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~-----g~~v~l~e~~~~~~~~~~~~~~~--~~~~~l~~~~n~~~g~gG~~~~sdg~l 291 (704)
.++|++||+|++|+++|+.++.. ..++.++|++.....+....... .....+. .|++..|.||++.|+++.+
T Consensus 18 ~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~-~~~I~~G~GgaG~fs~g~l 96 (486)
T COG2509 18 ALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCD-PCPIVIGFGGAGLFSDGIL 96 (486)
T ss_pred ccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccchhhcCCCC-CceeEecccccccccccce
Confidence 57999999999999999999863 57899999998766554332221 1111123 5789999999999999887
Q ss_pred h
Q 005273 292 V 292 (704)
Q Consensus 292 ~ 292 (704)
.
T Consensus 97 n 97 (486)
T COG2509 97 N 97 (486)
T ss_pred e
Confidence 6
No 403
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.05 E-value=0.014 Score=60.31 Aligned_cols=34 Identities=41% Similarity=0.609 Sum_probs=27.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-------CcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG-------ADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g-------~~v~l~e~~~ 252 (704)
..+|+|||+|..||+.|+.+.+.+ .+|++++-..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 468999999999999998888744 4688886544
No 404
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.65 E-value=0.17 Score=61.33 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=43.1
Q ss_pred HHHHHCCCEEEeCeEEEEEEEe-CCEEEEEEEcCCC-------C-CC--------------CCceeEEecCeEEEcCCCC
Q 005273 340 QHLQRLGVTIKFGTRVDDLLIE-NARIVGVKVSDSK-------D-NS--------------QSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 340 ~~l~~~Gv~i~~~t~V~~i~~~-~g~v~GV~~~~~~-------~-~~--------------~~~~~~i~Ad~VVlAtG~~ 396 (704)
+.+.+.||+|.+++...++..+ +|++.++++.... + .. .+...++.||.||+|+|..
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 4556789999999998888775 4889988875311 0 00 0133679999999999987
Q ss_pred hHH
Q 005273 397 ARD 399 (704)
Q Consensus 397 s~~ 399 (704)
.+.
T Consensus 728 ~~~ 730 (1028)
T PRK06567 728 NNT 730 (1028)
T ss_pred Ccc
Confidence 654
No 405
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.58 E-value=0.089 Score=56.71 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChHHHHHHHHhCCCcccc
Q 005273 334 LLRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSARDIYEMLVSHNINLVP 413 (704)
Q Consensus 334 l~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~~~~~~l~~~gi~l~~ 413 (704)
+.++-.+.+++.||.++.|..|.++......+ -+.+.|+ .++..|.||+|+|--++. ++++..|+.+..
T Consensus 395 ls~wt~ekir~~GV~V~pna~v~sv~~~~~nl-~lkL~dG--------~~l~tD~vVvavG~ePN~--ela~~sgLeiD~ 463 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL-VLKLSDG--------SELRTDLVVVAVGEEPNS--ELAEASGLEIDE 463 (659)
T ss_pred HHHHHHHHHHhcCceeccchhhhhhhhhccce-EEEecCC--------CeeeeeeEEEEecCCCch--hhcccccceeec
Confidence 45666778888999999999998876654433 3556665 479999999999988764 455555665543
No 406
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.12 E-value=0.38 Score=52.49 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccccchhHHHHHHhhccccccccccCCcccccCcchhhhhc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRGRDIGALVVRRMLEMESNFCFGEGGAGTWSDGKLVTRIG 296 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~~~~~~~~~~~~l~~~~n~~~g~gG~~~~sdg~l~~~~~ 296 (704)
.++++|||+|+|.+|.+..-.|-..-++|+|+......- |..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl----------------------FTP---------------- 94 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL----------------------FTP---------------- 94 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceE----------------------Eee----------------
Confidence 446899999999999999888888889999997654310 000
Q ss_pred cCchhHHHHHHHHHHcCCCceeecCCccccCCCChHHHHHHHHHHHHHCC-CEEEeCeEEEEEEEeCCEEEEEEEcCCCC
Q 005273 297 RNSNSVLAVMNTLVHFGAPANILVDGKSHLGTDRLIPLLRNFRQHLQRLG-VTIKFGTRVDDLLIENARIVGVKVSDSKD 375 (704)
Q Consensus 297 ~~~~~~~~~l~~l~~~G~~~~~~~~g~~~~g~~~~~~l~~~L~~~l~~~G-v~i~~~t~V~~i~~~~g~v~GV~~~~~~~ 375 (704)
+.. ....|+-.++.+++-++...+... -.-++..+..++..+..+|. ++.....+
T Consensus 95 ----------------------LLp-S~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~ 150 (491)
T KOG2495|consen 95 ----------------------LLP-STTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADS 150 (491)
T ss_pred ----------------------ccC-CccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCC
Confidence 000 012355566667777777776653 23344666777766555432 22111111
Q ss_pred CCCCceeEEecCeEEEcCCCChH
Q 005273 376 NSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 376 ~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
+.....+..|.+|+|+|+.++
T Consensus 151 --~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 151 --SDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred --CcceeeecccEEEEeccCCCC
Confidence 112467899999999999875
No 407
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=93.86 E-value=0.03 Score=59.88 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=63.0
Q ss_pred cchhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHHHhc
Q 005273 52 PSEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTVVRK 127 (704)
Q Consensus 52 ~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i~~~ 127 (704)
.+|...+.+..+++|+|++++..++. ......| ..+-+..++||+.++|||+. |. |+.++++++.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~-~~~y~g~----------~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTK-EDGYRAE----------HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCC-ccCCCCC----------cccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 45677888999999999999998742 1111111 11346899999999999963 54 9999999964
Q ss_pred c-cc----cccccCCCeEEEEEEE
Q 005273 128 S-FD----ARKVLKEPKFVYTVDM 146 (704)
Q Consensus 128 ~-~D----aR~~ladp~~~~kv~~ 146 (704)
. +| ||+.|+||.|..++..
T Consensus 216 ~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 216 TGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred cCCCEEEEcHHhHhCcHHHHHhhc
Confidence 4 99 9999999999876654
No 408
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.77 E-value=0.17 Score=51.67 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=27.9
Q ss_pred cEEEEcCCHHHHHHHHHHHH--cCCcEEEEEeCccc
Q 005273 221 KVAVVGGGPSGLFASLVLAE--LGADVTLIERGQAV 254 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~--~g~~v~l~e~~~~~ 254 (704)
+.+|||||+||.+||-.|+. ....|+|+...+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 35899999999999999987 35678888777654
No 409
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.50 E-value=0.18 Score=58.00 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.+++|+|||+|.+|.-.|..|++...+|++.-|..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 46899999999999999999999988999987764
No 410
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.27 E-value=0.071 Score=51.05 Aligned_cols=32 Identities=41% Similarity=0.590 Sum_probs=30.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
+|.|+|+|..|..+|..|+++|++|+|+.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998875
No 411
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.24 E-value=0.22 Score=54.83 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=34.1
Q ss_pred HHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCChH
Q 005273 343 QRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHSAR 398 (704)
Q Consensus 343 ~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~s~ 398 (704)
.+.+++++.+++|.++..+... |.+.++ .+..|.+|+|||....
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~~---v~~~~g---------~~~yd~LvlatGa~~~ 107 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENKV---VLLDDG---------EIEYDYLVLATGARPR 107 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCCE---EEECCC---------cccccEEEEcCCCccc
Confidence 4678999999999999776553 344443 4789999999999875
No 412
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.11 E-value=0.084 Score=52.05 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=27.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||.|..||..|..||+.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999999865
No 413
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.86 E-value=0.04 Score=58.72 Aligned_cols=97 Identities=8% Similarity=0.135 Sum_probs=65.1
Q ss_pred chhHHHHHHhhhcccccccc---cccceEeecccccC-CCC----CCCCcccchHHHHHHHHHHcCCCCCC---C-Chhh
Q 005273 53 SEKKKLKQKHKQVLNDVNNK---FEGFWRLSKLAVPV-HKD----PGKDFIGVSHALLDEITKVLQFPVAS---M-LPAE 120 (704)
Q Consensus 53 ~~~~~~~~~~~~~~~d~~~~---~~g~~~~~~~~~~~-~~~----~~~~~~g~~~~l~~~i~k~~~ipv~~---~-~p~~ 120 (704)
.+...+.++.+++|+|.+++ +.|+.....-..|. ... .++...-...++.+.|++.+++|++. | +++.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 46677888899999988765 44542110000010 000 00000113467889999999999964 5 4999
Q ss_pred HHHHHhcccc----cccccCCCeEEEEEEEeec
Q 005273 121 AFTVVRKSFD----ARKVLKEPKFVYTVDMDVS 149 (704)
Q Consensus 121 a~~i~~~~~D----aR~~ladp~~~~kv~~~~~ 149 (704)
+++++..++| +|+.++||+|+.++..++.
T Consensus 249 a~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~ 281 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYDPYAFPKIIEGLE 281 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHH
Confidence 9999988898 9999999999999887763
No 414
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.73 E-value=0.13 Score=50.44 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999865
No 415
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.67 E-value=0.12 Score=50.97 Aligned_cols=36 Identities=39% Similarity=0.588 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..++|+|||+|.+++.+|..|++.|.+|+++-|.+.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 358999999999999999999999999999988753
No 416
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.53 E-value=0.085 Score=53.71 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=62.7
Q ss_pred chhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHHHhc-
Q 005273 53 SEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTVVRK- 127 (704)
Q Consensus 53 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i~~~- 127 (704)
.|...+.+..++.++|.++++.+.... ... .+.+.+..+.|++.+++|+.. +. ++.+.++++.
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~-------~~~-----~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~ 205 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQ-------RYS-----GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT 205 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHH-------cCC-----CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc
Confidence 477788888888999999988764211 001 133467788999999999963 54 9999999976
Q ss_pred ccc----cccccCCCeEEEEEEE
Q 005273 128 SFD----ARKVLKEPKFVYTVDM 146 (704)
Q Consensus 128 ~~D----aR~~ladp~~~~kv~~ 146 (704)
++| ||..++||+|+.++..
T Consensus 206 gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 206 GVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CCCEEEEcHHhHhCCHHHHhhhh
Confidence 688 9999999999987654
No 417
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.21 E-value=0.42 Score=53.47 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred HHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEe--cCeEEEcCCCChH
Q 005273 342 LQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLG--FDAVILAVGHSAR 398 (704)
Q Consensus 342 l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~--Ad~VVlAtG~~s~ 398 (704)
+.+.|++++.+++|+.+..++.. |.+.+..+ ...+. +|.||+|||+.++
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~---v~~~~~~~-----~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQT---VVVRNNKT-----NETYEESYDYLILSPGASPI 104 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCE---EEEEECCC-----CCEEecCCCEEEECCCCCCC
Confidence 46789999999999998765553 33332211 12466 9999999998653
No 418
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.10 E-value=0.14 Score=56.17 Aligned_cols=50 Identities=30% Similarity=0.367 Sum_probs=37.3
Q ss_pred HHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 338 FRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 338 L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
+...+...|.+|+++++|+.|..++++|. |.+.++ ..+.||.||+|+...
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-v~~~~g--------~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVT-VTTEDG--------ETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEE-EEETTS--------SEEEESEEEE-S-HH
T ss_pred HHHHHhhcCceeecCCcceeccccccccc-cccccc--------eEEecceeeecCchh
Confidence 33444456789999999999999998775 666665 379999999999854
No 419
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.58 E-value=0.22 Score=46.89 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=29.6
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 222 v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
|+|+|+|..|...|+.|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999986
No 420
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=91.49 E-value=0.11 Score=55.45 Aligned_cols=99 Identities=8% Similarity=0.119 Sum_probs=65.3
Q ss_pred CcchhHHHHHHhhhcccccccccccceE--ee-cccccCCCC-CC----CCcccchHHHHHHHHHHcCCCCCC---CC-h
Q 005273 51 YPSEKKKLKQKHKQVLNDVNNKFEGFWR--LS-KLAVPVHKD-PG----KDFIGVSHALLDEITKVLQFPVAS---ML-P 118 (704)
Q Consensus 51 ~~~~~~~~~~~~~~~~~d~~~~~~g~~~--~~-~~~~~~~~~-~~----~~~~g~~~~l~~~i~k~~~ipv~~---~~-p 118 (704)
+..+...+.++.+++|+|.++++.++.. .. .-..|.... .+ +.......+....|++.+++|++. |. |
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~ 246 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSF 246 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCH
Confidence 3456778888899999999998865321 00 000111110 00 000011246788899999999974 54 9
Q ss_pred hhHHHHHhcccc----cccccCCCeEEEEEEEeec
Q 005273 119 AEAFTVVRKSFD----ARKVLKEPKFVYTVDMDVS 149 (704)
Q Consensus 119 ~~a~~i~~~~~D----aR~~ladp~~~~kv~~~~~ 149 (704)
+.++++++.++| +|..++||+|+.++..++.
T Consensus 247 ~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~ 281 (300)
T TIGR01037 247 EDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLI 281 (300)
T ss_pred HHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHH
Confidence 999999987798 9999999988776665543
No 421
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.44 E-value=0.17 Score=44.67 Aligned_cols=35 Identities=40% Similarity=0.558 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
++++|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 36799999999999999999999999999998774
No 422
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.25 Score=50.30 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++++|||+|..|...|..|.+.|+.|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999875
No 423
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.89 E-value=0.32 Score=48.78 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++|+|||||.+|...+..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5799999999999999999999999999997653
No 424
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.74 E-value=0.34 Score=46.93 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
+.+|+|+|+|.+|..||..|...|++|+++|....
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 47899999999999999999999999999998754
No 425
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.38 E-value=2.1 Score=46.71 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH---HCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 333 PLLRNFRQHLQ---RLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 333 ~l~~~L~~~l~---~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
++-+.|.++-. +..+.++.+++|..+...++.-..+.+.... +++..++.+|+||+|||-.
T Consensus 276 ~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~---~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 276 EIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE---TGELETVETDAVILATGYR 339 (436)
T ss_pred HHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc---CCCceEEEeeEEEEecccc
Confidence 44455554421 2357899999999998776432445444432 2245789999999999954
No 426
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.22 E-value=0.51 Score=43.93 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~ 252 (704)
..++++|||+|-+|-.++..|+..|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 368999999999999999999999987 99998874
No 427
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.21 E-value=0.41 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIE 249 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e 249 (704)
.+++|+|||||..|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 36799999999999999999999999999995
No 428
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.04 E-value=0.34 Score=51.78 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..|+++|++|+++++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4699999999999999999999999999999864
No 429
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.63 E-value=0.4 Score=50.68 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4699999999999999999999999999999864
No 430
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=89.62 E-value=0.1 Score=46.81 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=35.6
Q ss_pred CCCCCCCChhhHHHHHhcccc-cccccCCCeEEEEEEEeeccccccCCchhhhhhccccccccccccccccccCCceeee
Q 005273 110 QFPVASMLPAEAFTVVRKSFD-ARKVLKEPKFVYTVDMDVSKLLDLEPRTWDFISRLEAKVGSVEHMLDKRASGDLINII 188 (704)
Q Consensus 110 ~ipv~~~~p~~a~~i~~~~~D-aR~~ladp~~~~kv~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~v~i~ 188 (704)
+||+..-.|++...+-++.++ |...+. . .+++|.++||+|+...+||.+|.+. .++||+|+
T Consensus 35 aCP~~~dip~~i~~i~~g~~~~A~~~i~------------~-----~np~p~vcGrvCp~p~~Ce~~C~r~-~~~pV~I~ 96 (111)
T PF14691_consen 35 ACPAHIDIPEYIRLIREGNFKEAYELIR------------E-----DNPFPAVCGRVCPHPKQCESACRRG-KGEPVAIR 96 (111)
T ss_dssp TSTT---HHHHHHHHHCT-HHHHHHHHH------------H-----H-TTHHHHHHH--GGGSGGGG-GGG-ST-S--HH
T ss_pred CCCCCCcHHHHHHHHHCCCHHHHHHHHH------------H-----hCCCcccccCCCCCcchHHHHccCC-CCCCCcHH
Confidence 567665458777766666665 554421 1 1469999999998444499999998 45999988
Q ss_pred c
Q 005273 189 H 189 (704)
Q Consensus 189 ~ 189 (704)
.
T Consensus 97 ~ 97 (111)
T PF14691_consen 97 A 97 (111)
T ss_dssp H
T ss_pred H
Confidence 6
No 431
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.60 E-value=0.41 Score=50.57 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..+++.|++|+++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 432
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.43 E-value=0.42 Score=50.56 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
.+|.|||+|..|...|..+++.|++|+++|+.+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 47999999999999999999999999999998764
No 433
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.38 E-value=0.5 Score=47.25 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERG 251 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~ 251 (704)
.++|+|||||-.|...|..|.+.|++|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 579999999999999999999999999999754
No 434
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.32 E-value=0.53 Score=50.57 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
-++|.|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999999864
No 435
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.29 E-value=0.55 Score=50.26 Aligned_cols=34 Identities=32% Similarity=0.631 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
..+|+|||+|..|...|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999874
No 436
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.21 E-value=0.45 Score=51.68 Aligned_cols=34 Identities=35% Similarity=0.591 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||.|..||..|..||+.||+|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 437
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.10 E-value=0.27 Score=52.02 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=64.1
Q ss_pred CCcchhHHHHHHhhhcccccccccccceEe---ecccccCCCCCCCCccc-----chHHHHHHHHHHc--CCCCCC---C
Q 005273 50 RYPSEKKKLKQKHKQVLNDVNNKFEGFWRL---SKLAVPVHKDPGKDFIG-----VSHALLDEITKVL--QFPVAS---M 116 (704)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~---~~~~~~~~~~~~~~~~g-----~~~~l~~~i~k~~--~ipv~~---~ 116 (704)
-.+.|..++.+..+++|+|.+.++.+.... ..-..|....+..-..| ...++.+.|++.+ ++|++. |
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 345578889999999999999988664211 11011111111000011 1356788999999 899963 5
Q ss_pred C-hhhHHHHHhcccc----cccccCC-CeEEEEEE
Q 005273 117 L-PAEAFTVVRKSFD----ARKVLKE-PKFVYTVD 145 (704)
Q Consensus 117 ~-p~~a~~i~~~~~D----aR~~lad-p~~~~kv~ 145 (704)
. ++.+.++++.++| +|..++| |+++.++.
T Consensus 253 ~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 5 9999999988898 9999999 99877653
No 438
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=88.97 E-value=0.46 Score=49.90 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=30.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEEeCcc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAEL-GA-DVTLIERGQA 253 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~-g~-~v~l~e~~~~ 253 (704)
.++++|+|||||.+|+.+|..+.++ |. +|.|+|..+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4578999999999999999988774 33 6899987653
No 439
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.97 E-value=0.56 Score=50.06 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
++|+|||+|..|...|..|++.|++|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 579999999999999999999999999999964
No 440
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=88.73 E-value=0.065 Score=56.23 Aligned_cols=52 Identities=35% Similarity=0.537 Sum_probs=35.8
Q ss_pred EEEEEeeecCceeccCCCCCccccCcCCeeEccccchhhHH------------HHHHHHHHHHHHHHHHh
Q 005273 623 LHGVETRTSCPLQIPRNNETCESTSLKGLYPVGEGAGYAGG------------IVSAAADGMYAGFAVAK 680 (704)
Q Consensus 623 ~~Gve~~~~~p~~i~~~~~tles~~i~GLy~~GE~aG~~GG------------i~sA~~~G~~Aa~~i~~ 680 (704)
++|++|+-.+.| ++.+ -+.+||||++||.+|.-|| +-.++.+|..|++++..
T Consensus 487 LGGl~TdL~~rV---l~A~---GqPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa~ 550 (552)
T COG3573 487 LGGLETDLDARV---LGAD---GQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAAG 550 (552)
T ss_pred ccCcccchhhhh---hCCC---CCCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhhcc
Confidence 778888765433 2322 2589999999999887776 23566677777776643
No 441
>PRK04148 hypothetical protein; Provisional
Probab=88.60 E-value=0.52 Score=43.73 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
+.+++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34789999999 899889999999999999998875
No 442
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.55 E-value=0.57 Score=50.38 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=58.6
Q ss_pred chhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHHHh-c
Q 005273 53 SEKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTVVR-K 127 (704)
Q Consensus 53 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i~~-~ 127 (704)
.+...+.++.+++|+|.+.+..... . +..+ .+...++.+.|++.+++||+. +. ++.+.++++ .
T Consensus 147 ~~~~~~a~~l~~~G~d~i~vh~r~~---~-----~~~~----~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 147 INAVEAARIAEDAGAQAVTLHGRTR---A-----QGYS----GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred chHHHHHHHHHHhCCCEEEEEcccc---c-----ccCC----CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 3456788888999999998864321 0 0000 134568899999999999963 54 999999995 5
Q ss_pred ccc----cccccCCCeEEEEE
Q 005273 128 SFD----ARKVLKEPKFVYTV 144 (704)
Q Consensus 128 ~~D----aR~~ladp~~~~kv 144 (704)
++| ||+.|+||.|..++
T Consensus 215 gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 215 GCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred CCCEEEEChhhhhCChHHHHH
Confidence 588 99999999886543
No 443
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.47 E-value=0.55 Score=49.74 Aligned_cols=34 Identities=35% Similarity=0.347 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..|+++|++|+++++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 444
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.29 E-value=0.58 Score=49.68 Aligned_cols=30 Identities=43% Similarity=0.546 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIER 250 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~ 250 (704)
+|+|||+|..|...|..|++.|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 445
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.05 E-value=0.62 Score=49.35 Aligned_cols=32 Identities=41% Similarity=0.626 Sum_probs=29.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
+|.|||+|..|...|..|++.|++|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 446
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.84 E-value=0.62 Score=49.31 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998864
No 447
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.22 E-value=0.71 Score=52.61 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.+.+|+|+|+|++|+.|+..+...|.+|+++|..+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367999999999999999999999999999998764
No 448
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.18 E-value=0.8 Score=45.72 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
..+|+|||+|..|...|..|++.|. +++|+|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 699999874
No 449
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.11 E-value=0.79 Score=50.36 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
..+|+|||+|.+|+.+|..|.+.|.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999864
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.95 E-value=0.65 Score=48.69 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 217 TRKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 217 ~~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
-.+-+|+|||||.+|..||..+.-.|.+|+++|.+..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 3456899999999999999999999999999999843
No 451
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=86.95 E-value=1.4 Score=48.70 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCEEEeCeEEEEEEEeCCEEEEEEEcCCCCCCCCceeEEecCeEEEcCCCC
Q 005273 335 LRNFRQHLQRLGVTIKFGTRVDDLLIENARIVGVKVSDSKDNSQSDIQKLGFDAVILAVGHS 396 (704)
Q Consensus 335 ~~~L~~~l~~~Gv~i~~~t~V~~i~~~~g~v~GV~~~~~~~~~~~~~~~i~Ad~VVlAtG~~ 396 (704)
.+.|.+.+++.|++|+++++|++|..+++++..+...++ ..+.||.||+|+-..
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g--------~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGG--------ETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCC--------ccccCCEEEEcCCHH
Confidence 355888888899999999999999988876543333232 358899999987654
No 452
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.90 E-value=0.84 Score=50.64 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.+++|+|+|.|+.|+.+|..+...|.+|+++|..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 367999999999999999999999999999998753
No 453
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.19 E-value=0.89 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~ 253 (704)
..+|+|||+|..|.+.|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 6999998754
No 454
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.99 E-value=0.91 Score=47.80 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999998764
No 455
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=85.70 E-value=0.96 Score=48.92 Aligned_cols=33 Identities=42% Similarity=0.665 Sum_probs=30.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
++|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999864
No 456
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.41 E-value=1.2 Score=46.47 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~ 253 (704)
..+|+|||.|..|.++|..|++.| .+++|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 468999999999999999999999 58999997754
No 457
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.39 E-value=0.91 Score=50.70 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||.|..|+..|..|++.|++|+++|+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 458
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.31 E-value=0.27 Score=52.25 Aligned_cols=96 Identities=8% Similarity=0.181 Sum_probs=63.3
Q ss_pred chhHHHHHHhhhccccccccc---ccce-EeecccccCCCC-----CCCCcccchHHHHHHHHHHcCCCCCC---C-Chh
Q 005273 53 SEKKKLKQKHKQVLNDVNNKF---EGFW-RLSKLAVPVHKD-----PGKDFIGVSHALLDEITKVLQFPVAS---M-LPA 119 (704)
Q Consensus 53 ~~~~~~~~~~~~~~~d~~~~~---~g~~-~~~~~~~~~~~~-----~~~~~~g~~~~l~~~i~k~~~ipv~~---~-~p~ 119 (704)
+|...+.+..+++|+|.+.++ .|+. ..... -|.... .+....-...++.+.+++.+++|++. | +|+
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~-~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETR-KPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccC-ceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 467778888889999876553 4431 11111 111000 00000112457888999999999964 5 499
Q ss_pred hHHHHHhcccc----cccccCCCeEEEEEEEeec
Q 005273 120 EAFTVVRKSFD----ARKVLKEPKFVYTVDMDVS 149 (704)
Q Consensus 120 ~a~~i~~~~~D----aR~~ladp~~~~kv~~~~~ 149 (704)
.+.+.++.++| +|+.++||+|+.++..++.
T Consensus 245 da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 245 DALEFLMAGASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred HHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHH
Confidence 99999988899 9999999999887766654
No 459
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.01 E-value=1.2 Score=47.75 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELG--ADVTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~ 253 (704)
+|.|||+|..|..+|+.|+++| .+++++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 58999998754
No 460
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.73 E-value=1.1 Score=50.46 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=31.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++|+|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999998764
No 461
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.36 E-value=1.1 Score=50.11 Aligned_cols=33 Identities=42% Similarity=0.571 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
+|.|||.|..|+..|..|++.|++|+++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 689999999999999999999999999998754
No 462
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.28 E-value=1.4 Score=43.95 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.+++|+|+|.|-.|..+|..|.+.|++|+++|+..
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35789999999999999999999999999998764
No 463
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.13 E-value=1.5 Score=46.82 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++|.|||+|..|...|..|++.|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999875
No 464
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.12 E-value=1.4 Score=47.05 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..|++.|++|+++++...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5799999999999999999999999999998654
No 465
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=84.05 E-value=1.3 Score=47.63 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=54.7
Q ss_pred hhHHHHHHhhhcccccccccccceEeecccccCCCCCCCCcccchHHHHHHHHHHcCCCCCC---CC-hhhHHHHHhc-c
Q 005273 54 EKKKLKQKHKQVLNDVNNKFEGFWRLSKLAVPVHKDPGKDFIGVSHALLDEITKVLQFPVAS---ML-PAEAFTVVRK-S 128 (704)
Q Consensus 54 ~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~l~~~i~k~~~ipv~~---~~-p~~a~~i~~~-~ 128 (704)
+...+.++.+++|+|.+.+...+. .+.. .. ...-++.+.|++.+++||+. |. ++.+.++++. +
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~--~~~~-----~G-----~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTR--ACLF-----NG-----EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcc--cccc-----CC-----CcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccC
Confidence 456788888999999998876431 1100 00 02346889999999999963 54 9999999974 6
Q ss_pred cc----cccccCCCeE
Q 005273 129 FD----ARKVLKEPKF 140 (704)
Q Consensus 129 ~D----aR~~ladp~~ 140 (704)
+| ||+.|+||.+
T Consensus 218 adgVmiGR~~l~nP~i 233 (321)
T PRK10415 218 ADALMIGRAAQGRPWI 233 (321)
T ss_pred CCEEEEChHhhcCChH
Confidence 99 9999998865
No 466
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=84.03 E-value=0.95 Score=51.77 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=35.0
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 222 v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
|||||||++||+||..|++.|++|+|+|+.+.+|++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999998764
No 467
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.93 E-value=1.4 Score=47.12 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
++|.|||+|..|...|+.++.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999854
No 468
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.79 E-value=1.4 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
.++|+|||+|.+|..+|+.|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5789999999999999999999997 699998874
No 469
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=83.78 E-value=1.8 Score=48.74 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEE
Q 005273 215 PRTRKPKVAVVGGGPSGLFASLVLAELGA-DVTLIE 249 (704)
Q Consensus 215 ~~~~~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e 249 (704)
+....++|+|||+|-.++-||....+.|. +|+.++
T Consensus 258 ~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 258 PPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293 (457)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence 33445899999999999999999999998 688776
No 470
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.40 E-value=1.5 Score=47.57 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
..+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 799999875
No 471
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.34 E-value=1.5 Score=49.39 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.++|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 472
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.22 E-value=1.4 Score=46.66 Aligned_cols=34 Identities=38% Similarity=0.465 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 473
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=83.13 E-value=0.71 Score=49.71 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcccccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQR 257 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~ 257 (704)
.+++.+|||+|..||+.+....+.|.+||++|-.+.+++.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 4678999999999999999999999999999999888754
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.06 E-value=1.7 Score=46.29 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.++|+|||.|.+|..+|..|.+.|.+|+++++...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57999999999999999999999999999998853
No 475
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=83.05 E-value=0.95 Score=51.71 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=36.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccccccc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQAVEQRG 258 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~~~~~ 258 (704)
+||+|||+|++||+||..|+++|++|+|+||+..+|+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 39 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSA 39 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence 489999999999999999999999999999999998764
No 476
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.01 E-value=1.5 Score=46.84 Aligned_cols=34 Identities=44% Similarity=0.573 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|.|||+|..|...|..|++.|++|+++++.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4699999999999999999999999999998753
No 477
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.97 E-value=1.5 Score=47.19 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
+|.|||+|..|...|..|++.|++|+++.|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999864
No 478
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.97 E-value=1.6 Score=46.97 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.++|.|||+|..|...|..|++.|++|+++++...
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35799999999999999999999999999999643
No 479
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.68 E-value=1.7 Score=46.01 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..++|+|||.|.+|..+|..|...|.+|++++|...
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998753
No 480
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.63 E-value=1.8 Score=43.19 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~ 253 (704)
..+|+|||.|..|.++|..|++.|. +++|+|....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 5789999999999999999999997 7999998753
No 481
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.53 E-value=1.5 Score=50.27 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=32.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
-++|.|||+|..|...|..+++.|++|+++|+.+..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 357999999999999999999999999999998654
No 482
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.37 E-value=1.7 Score=48.06 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..++|+|+|.|+.|..+|..+...|.+|+++|..+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 467999999999999999999999999999998753
No 483
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.04 E-value=1.8 Score=47.53 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELG-ADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g-~~v~l~e~~~~ 253 (704)
++|+|||+|-.|..+|..|+++| .+|++.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 68999999999999999999999 89999999843
No 484
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.96 E-value=2.2 Score=38.03 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=28.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 222 VAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 222 v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
|+|+|.|..|...+..|.+.+.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999997779999999865
No 485
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=81.74 E-value=2 Score=43.75 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=31.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCc---EEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGAD---VTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~---v~l~e~~~~ 253 (704)
..+|+|+|+|-+|..+|..|.+.|.+ ++|++|...
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 46899999999999999999999974 999999743
No 486
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.73 E-value=2 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~ 252 (704)
..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999998 899999864
No 487
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.61 E-value=1.7 Score=49.26 Aligned_cols=35 Identities=40% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.++|+|+|.|.+|+.+|..|.+.|++|++.|+.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 46899999999999999999999999999998753
No 488
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.59 E-value=1.7 Score=49.64 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeC
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERG 251 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~ 251 (704)
.++|+|+|.|..|++++..|.+.|++|++.|..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999965
No 489
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.57 E-value=2 Score=41.17 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
.+.++|+|-|..|-.+|..|...|.+|+|.|..+.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 67899999999999999999999999999999874
No 490
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.52 E-value=2.1 Score=45.31 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGAD-VTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~ 252 (704)
.+.++|+|+|-+|..+|+.|++.|.+ |+|+.|..
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 56899999999999999999999986 99998874
No 491
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.50 E-value=2.1 Score=42.22 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=30.4
Q ss_pred CCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEEeCc
Q 005273 219 KPKVAVVGG-GPSGLFASLVLAELGADVTLIERGQ 252 (704)
Q Consensus 219 ~~~v~vvG~-G~aGl~aA~~l~~~g~~v~l~e~~~ 252 (704)
.++++|+|+ |..|..+|..|++.|++|+++.|..
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 578999997 9999999999999999999998763
No 492
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.48 E-value=2 Score=45.94 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC--CcEEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELG--ADVTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g--~~v~l~e~~~~ 253 (704)
+|+|||+|.+|..+|+.|+..| .+++|+++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 57999999754
No 493
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.27 E-value=2.4 Score=41.11 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCH-HHHHHHHHHHHcCCcEEEEEeC
Q 005273 218 RKPKVAVVGGGP-SGLFASLVLAELGADVTLIERG 251 (704)
Q Consensus 218 ~~~~v~vvG~G~-aGl~aA~~l~~~g~~v~l~e~~ 251 (704)
..++|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468999999996 6999999999999999999876
No 494
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.27 E-value=2 Score=41.19 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=29.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 220 PKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 220 ~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
++|-|||-|-.|...|..|.+.|++|+++++.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5799999999999999999999999999998854
No 495
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.08 E-value=1.8 Score=51.75 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
-++|.|||+|..|...|..++..|++|+|+|..+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 368999999999999999999999999999998653
No 496
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.08 E-value=2 Score=48.95 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGADVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~ 253 (704)
..+|+|+|+|++|+.++..+...|.+|+++|....
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998764
No 497
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.86 E-value=1.9 Score=51.56 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
.-++|.|||+|..|...|..++..|++|+++|.....
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 4468999999999999999999999999999998654
No 498
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.81 E-value=2.3 Score=43.70 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEEeCcc
Q 005273 219 KPKVAVVGGGPSGLFASLVLAELGA-DVTLIERGQA 253 (704)
Q Consensus 219 ~~~v~vvG~G~aGl~aA~~l~~~g~-~v~l~e~~~~ 253 (704)
..+|+|||+|..|..+|..|++.|. +++|+|....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999999999999999999996 6888887753
No 499
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.76 E-value=2.4 Score=41.25 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=29.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCc-EEEEEeCcc
Q 005273 221 KVAVVGGGPSGLFASLVLAELGAD-VTLIERGQA 253 (704)
Q Consensus 221 ~v~vvG~G~aGl~aA~~l~~~g~~-v~l~e~~~~ 253 (704)
+|+|||+|..|...|..|++.|.. ++|+|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 589999999999999999999984 999998753
No 500
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=80.74 E-value=1.8 Score=48.77 Aligned_cols=37 Identities=41% Similarity=0.530 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEEeCccc
Q 005273 218 RKPKVAVVGGGPSGLFASLVLAELGADVTLIERGQAV 254 (704)
Q Consensus 218 ~~~~v~vvG~G~aGl~aA~~l~~~g~~v~l~e~~~~~ 254 (704)
.+|+|+|||+|.+|...|..|++.|.+|+++-|.+..
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 4689999999999999999999999999999998764
Done!