BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005274
(704 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/702 (71%), Positives = 583/702 (83%), Gaps = 12/702 (1%)
Query: 5 LLLLFASPPIPALPANQQLKIYGKPI--NHRHLKSSRVSATRDDVDAFTEKSSYLFKLSS 62
+L L +S PI + PAN L I +P + R + VSA DVD+FT KS YLF LS+
Sbjct: 1 MLRLPSSMPIVSFPANPNLLINPQPSWPSRRGNSAVVVSAASRDVDSFTSKSGYLFSLSA 60
Query: 63 TDADSIVEYDLRKIASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRA 122
+ADS+ EY+ +I +Y++KPLILLRR+ Q+GTTF +WFG R DE +ERSDQMF VRA
Sbjct: 61 DEADSLSEYNFPRIDGMYKKKPLILLRRLAQIGTTFSYWFGLRLADEALERSDQMFKVRA 120
Query: 123 AELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELG 182
AELRK+LVELGPAYVKIAQAVSSRPDLIPP YLDELSLLQDQITPFS+EVAFN IE ELG
Sbjct: 121 AELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDELG 180
Query: 183 LPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAG 242
LPIDELFSEISPEPVAAASLGQVYQARLR+SG+VVAVKVQRPGV+AAI+LD IL +IAG
Sbjct: 181 LPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYIAG 240
Query: 243 LIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
LI+KA +FN+DL+AVVDEWA+SLF+E+DY EA+NG+KFR+LYGGI+DVL+P+MY E +T
Sbjct: 241 LIKKAGRFNSDLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLVPKMYTEYST 300
Query: 303 RKVLIMEWVEGQKLSEVKDLYLIEVGVYCSFNQLLEKGFYHADPHPGNLFRSYDGKLAYI 362
KVL+MEWVEGQKL+EV DLYL+EVGVYCSFNQLLE GFYHADPHPGN R+YDG+LAY+
Sbjct: 301 SKVLVMEWVEGQKLNEVNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYL 360
Query: 363 DFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQN 422
DFGMMG+F+ ELR+GF+EACLHLVNRDF ALAKDFVTLGLLPPTAEK AVTKALT VFQ+
Sbjct: 361 DFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQD 420
Query: 423 AVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGST 482
A+++GVRNISFGDLLG+LG TMY+FKFRIP YFSLVIRSLAVLEGIAI +PNYKVLGST
Sbjct: 421 AISRGVRNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGST 480
Query: 483 YPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLRARTEKALVKKQTEDTD 542
YP+IARK+LTDSSPQLKSSL LLY+EGVFRIDRLESLL+ESL RTE ALV+K T+
Sbjct: 481 YPWIARKILTDSSPQLKSSLQNLLYEEGVFRIDRLESLLSESL--RTETALVQKPVVGTE 538
Query: 543 SRLITKEILSFTLTEKGAFVREILLQEFAKGLDALGIATLDYFTSAVIPFAAPFSFSSLT 602
S + K++L+FT TE+G+FVREILL+EFAKGLDA G+ATLD FT F+ SSLT
Sbjct: 539 SNIAMKQMLAFTFTEQGSFVREILLREFAKGLDAYGLATLDSFT-----FSGSGPSSSLT 593
Query: 603 EEDRINLTNLRRLLLLLSRVQSSKSASVEVKEGSIYKNQTTYSEEASLVFYQLASAQEVL 662
EED NL RL+ L S +Q +KS +VK S Y T +EASLV YQL SAQE+L
Sbjct: 594 EEDMTNLRTFYRLISLFSGMQKAKS---QVKAVSKYGEALTPLDEASLVMYQLPSAQEML 650
Query: 663 PILSVIPELPPELQQEFLHLPADLAGRLISRAAARTIRRMFL 704
PILS++PELP E QQ L LP DL GRL++RA ARTIRR+FL
Sbjct: 651 PILSILPELPQESQQRLLQLPGDLVGRLVTRAFARTIRRIFL 692
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/527 (45%), Positives = 341/527 (64%), Gaps = 33/527 (6%)
Query: 70 EYDLRKIASVYRRKPLILLRRVFQV-----GTTFG-WWFGSRFVDELMERSDQMFPVRAA 123
EY I YR++PL +L R+ + G WW R D + R+ +A
Sbjct: 52 EYHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRA------KAI 105
Query: 124 ELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGL 183
+LR++L LGP Y+K+ QA+S+RPDL+PP +LDEL+ LQDQ+ F +EVA+ IE+ELG
Sbjct: 106 QLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGA 165
Query: 184 PIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGL 243
P +E+++E+SPEP+AAASLGQVY+ +L+ +G VAVKVQRP + I+LDI+I+ ++
Sbjct: 166 PAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSLSLW 224
Query: 244 IRKA-RKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
R++ ++ +DL A+ DE AS +F E++Y EA NG KF QLYG + ++ +P +Y + T
Sbjct: 225 ARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTG 284
Query: 303 RKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLFRS 354
R+VL MEWVEG KL+ +K + +L+EVGV CS QLLE GF+HADPHPGNL
Sbjct: 285 RRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAM 344
Query: 355 YDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTK 414
DG+LAY+DFGMM + R G IEA +HLVNRDFD+LAKD+V L L P + + +
Sbjct: 345 ADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIP 404
Query: 415 ALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNP 474
AL VF NA+ V ++F + + A MY+F FR+P+Y++L+IRS+ LEGIAI +P
Sbjct: 405 ALGQVFGNALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDP 464
Query: 475 NYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLRARTEKALV 534
N+KVL YPYIA+++LTD S +L++SL LL+KEG FR +RLE+LL +
Sbjct: 465 NFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNRLENLLRNA---------- 514
Query: 535 KKQTEDTDSRLITKEILSFTLTEKGAFVREILLQEFAKGLDALGIAT 581
K + D + E F L+++G F+R+ L+ E +D LG T
Sbjct: 515 -KNSPGFDFDYVLNEATEFLLSDRGQFIRDRLVAELVNSIDQLGRNT 560
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/522 (42%), Positives = 333/522 (63%), Gaps = 21/522 (4%)
Query: 76 IASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPA 135
IA + +P LRR ++ G + +D+ ++ RA ELR+I LGP
Sbjct: 101 IARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPT 160
Query: 136 YVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPE 195
+VK+ Q +S+RPDL PP YL+EL+ LQD + F AF IE+EL L ++ +FS +SPE
Sbjct: 161 FVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPE 220
Query: 196 PVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLIRKARKF-NTDL 254
P+AAASLGQVY+A+LR SG+VVAVKVQRPG++ AI LD +++ + LI K F TD+
Sbjct: 221 PIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDFITTDV 280
Query: 255 QAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQ 314
++DE+A +++EL+Y EA+N +F++LY DVL+P+++ + T+RKVL MEWVEG
Sbjct: 281 LTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGT 340
Query: 315 KLSE--------VKDLYLIEVGVYCSFNQLLEKGFYHADPHPGNLFRSYDGKLAYIDFGM 366
KL+E +K L L+ G+ CS QLLE GF+HADPHPGNL + DGKLA++DFGM
Sbjct: 341 KLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGM 400
Query: 367 MGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAK 426
M E EE R I +HLVNRD++A+A+D+ L L P + + AL F +A+
Sbjct: 401 MSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNY 460
Query: 427 GVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYI 486
V ++F L+ LGA Y++ F +P Y++L++RSL VLEG+A+ ++PN+KVL ++YPY
Sbjct: 461 TVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYF 520
Query: 487 ARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLRARTEKALVKKQTEDTDSRLI 546
A+++LTD +P L+ +L+ LL+K+G FR +RLE+LL + + R D ++
Sbjct: 521 AKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLQQGSKDR-----------DFSAKDA 569
Query: 547 TKEILSFTLTEKGAFVREILLQEFAKGLDALGIAT-LDYFTS 587
+ +L L G +R ++++E + +A+ + T +D + S
Sbjct: 570 LQPVLKLLLDPNGEELRLLVIKEAVRVSEAIALGTVVDTYNS 611
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/517 (38%), Positives = 323/517 (62%), Gaps = 24/517 (4%)
Query: 62 STDADSIVEYDLRKIASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVR 121
++ D+I Y+ + IA+ YRR+P +L R +V +FG++ D+ + + R
Sbjct: 10 QSELDNIRRYNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQR 69
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A +LR++L +LGP ++K+ QA+S+RPDL+ +L+EL LQDQ+ PF +++AF +E++L
Sbjct: 70 AEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQL 129
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIA 241
G+ +DE + EIS PVAAASLGQVY+A L SG VAVKVQRP ++ +SLD++++ A
Sbjct: 130 GMKVDEAYREISAHPVAAASLGQVYRAMLF-SGEEVAVKVQRPNLRPRLSLDLYLMRLGA 188
Query: 242 GLIRKARKFN--TDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVE 299
+ N DL +VDE+ LF E+DY E +N KF + + G +V +P +Y +
Sbjct: 189 QKFGRFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQ 248
Query: 300 QTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHPGNL 351
+ +KVL +EW++G KL++ + +I +GV QLLE GF+HADPHPGNL
Sbjct: 249 YSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNL 308
Query: 352 FRSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEA 411
F + DG++AYIDFGMM + + +E + + L+N+D+ AL +DF+ LG L P +
Sbjct: 309 FATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITP 368
Query: 412 VTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAIS 471
+ AL VF +A+ + V++ +F + + MY + FR+P+ F+L+IRSL EG+A+S
Sbjct: 369 IIPALENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALS 428
Query: 472 SNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLRARTEK 531
+PN+K++ YPY+AR++LT SPQL+ L+ +L+K G F+ RLE++L+ + R+ T+
Sbjct: 429 LDPNFKIVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQRLENMLSIA-RSDTKF 487
Query: 532 ALVKKQTEDTDSRLITKEI-LSFTLTEKGAFVREILL 567
L L T ++ L F +E+G ++R +L
Sbjct: 488 DL-----------LPTAQLGLQFLFSEEGLYLRRQIL 513
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 359 bits (921), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 277/446 (62%), Gaps = 10/446 (2%)
Query: 87 LLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSR 146
L+ R ++ T G ++ + D L+ R +++ P RA +LR +L LGP+++K Q +++R
Sbjct: 132 LVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLANR 191
Query: 147 PDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVY 206
PD+I Y++EL +LQD + PF +EVAFN IE+ELG P++ +FS+IS + +AAASLGQVY
Sbjct: 192 PDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVY 251
Query: 207 QARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLIR--KARKFNTDLQAVVDEWASS 264
+A LR +G VA+KVQRP ++ I D+F+ +A + +K + + +VDE+
Sbjct: 252 RATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAELIVDEFGEK 311
Query: 265 LFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSE---VKD 321
L ELDY +EA+N F + + V IP +Y +VL+MEW++G + ++ +KD
Sbjct: 312 LLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKD 371
Query: 322 LYL-----IEVGVYCSFNQLLEKGFYHADPHPGNLFRSYDGKLAYIDFGMMGEFKEELRE 376
+ + VGV + QLLE G +H DPHPGN+F DG++AY+DFG + ++ ++
Sbjct: 372 AGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQ 431
Query: 377 GFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDL 436
I+A +H VN D+ +A DF LG L + + AL ++QN+ KG+ + +F +
Sbjct: 432 ILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSV 491
Query: 437 LGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYIARKVLTDSSP 496
G +Y F RIP FSLVIRSL EGI + P++K L YPY+A+++LTD +P
Sbjct: 492 TGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 551
Query: 497 QLKSSLVALLYKEGVFRIDRLESLLT 522
L+ L+ +L+K+GVF+ RLE+LL+
Sbjct: 552 ALRERLIQVLFKDGVFQWKRLENLLS 577
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 253/456 (55%), Gaps = 31/456 (6%)
Query: 80 YRRKPLILLRRVFQVGTTFGWWFGSRFVDELME-RSDQMFPVRAAELRKILVELGPAYVK 138
+RR+ + + RVF + F W D L RS Q RA L + L+ LGP ++K
Sbjct: 23 WRRQ--LAVTRVFLLFVFFLSW------DRLTAPRSAQRRYRRAQWLVQQLLYLGPTFIK 74
Query: 139 IAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVA 198
I Q++S+R D+IP Y++ + LQD++ PF S A IEQEL IDE+F + P+A
Sbjct: 75 IGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLA 134
Query: 199 AASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH--------FIAGLIRKARKF 250
+ASLGQV++A L +G V VKVQRPG+ + ++LD +LH ++ G R A+K+
Sbjct: 135 SASLGQVHRAVL-PTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKY 193
Query: 251 NTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEW 310
+++A+ E+ S LF E+DY E KN +FRQ + V +PE+Y + TTR VL +E+
Sbjct: 194 --EIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEY 251
Query: 311 VEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLFRSYDGKLAYI 362
+ G K+ + + L +I+ G+ QLL GF+ +DPHPGN+ G L +
Sbjct: 252 LPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFY 311
Query: 363 DFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQN 422
DFG M E K ++ ++ ++ +D + + + + +GL+ P + + + + + N
Sbjct: 312 DFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDN 371
Query: 423 AVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGST 482
K + +F + + A + FR+P + +++S++ L+GIA + +P Y ++ ++
Sbjct: 372 FRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAAS 431
Query: 483 YPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLE 518
P+I + +T + P+ +S +ALL + F +D+L
Sbjct: 432 QPFI--QSITVAQPK-RSLAMALLQQVKQFALDQLN 464
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/407 (31%), Positives = 221/407 (54%), Gaps = 16/407 (3%)
Query: 100 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELS 159
W + + +E +++ + +A +R+ L+ LGP ++K+ Q S+R DL P Y++ELS
Sbjct: 66 WSYAGGYTEEKLQQRRRR---QAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELS 122
Query: 160 LLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAV 219
LQD++ FS E A IE+ELG PI +L+ P P+AAASLGQV++A+L +G V V
Sbjct: 123 KLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGEDVVV 181
Query: 220 KVQRPGVQAAISLDIFILHFIAGLIRKARKF--NTDLQAVVDEWASSLFRELDYKIEAKN 277
KVQRPG++ ++D+ IL IA + K+ D + +E L++E DY E ++
Sbjct: 182 KVQRPGLKKLFTIDLAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRS 241
Query: 278 GLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGV 329
FR+ + G V +P +Y T+ ++L +E++ G K+S L L ++G
Sbjct: 242 ADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGA 301
Query: 330 YCSFNQLLEKGFYHADPHPGNLFRSYD-GKLAYIDFGMMGEFKEELREGFIEACLHLVNR 388
QLL GF+HADPHPGNL S + G+L + DFGMMGE + + ++ + +
Sbjct: 302 RAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEK 361
Query: 389 DFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFK 448
+ + + V LG L T + + +++ + N + K S + +L Y
Sbjct: 362 NAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQP 421
Query: 449 FRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYIARKVLTDSS 495
FR P+ F+ V+R+ + LEG+ +P++ + P+ A +++ +S+
Sbjct: 422 FRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPF-ALQIMNNSN 467
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 212/407 (52%), Gaps = 26/407 (6%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
+R L LGP +VK Q +S+R DL+PP Y DEL+LLQD++ PF ++A +E+ LG
Sbjct: 52 VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRK 111
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQ----SGRVVAVKVQRPGVQAAISLDIFILHFI 240
++ELF + +PVA+AS+ QV++A LRQ GR VAVKV RPG+ I D+ ++ +
Sbjct: 112 VEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTL 171
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
AG + K L+ VV E+ L ELD EA N + R+ + G +++PE++
Sbjct: 172 AGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFY 231
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHPGN 350
+ ++R+VL +EW+ G + +++ L L GV F Q+ GF+HAD HPGN
Sbjct: 232 DYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGN 291
Query: 351 LFRSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKE 410
+F + DG+ +DFG++G + + L NRD+ +A + G +P E
Sbjct: 292 IFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAE 351
Query: 411 AVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAI 470
+ A+ V + K + ISFG +L L T +F I L+ ++L +EG+
Sbjct: 352 ELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGR 411
Query: 471 SSNPNYKVLGSTYPYIAR------------KVLTDSSPQLKSSLVAL 505
+P + + P++ + + L +PQ ++L L
Sbjct: 412 QLDPELDLWDTAKPFLTKWMNEQIGWRGLLRTLKHEAPQWATTLPTL 458
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 225/421 (53%), Gaps = 24/421 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D+L+LLQDQ+ PF ++A + +E ELG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQVAPFDGQLAKDQMEMELGGP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
+D F++ +P+A+AS+ QV+ A+L+ SGR + +KV RP ++ I DI +++ +A L+
Sbjct: 117 LDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLV 176
Query: 245 RK----ARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQ 300
+ AR+ V++E+ +L ELD + EA N ++ R+ + G +++ +PE+ ++
Sbjct: 177 EQHIPEARRLKP--VKVIEEYEKTLLDELDLRREASNAMQLRRNFEGSEELYVPEVILDL 234
Query: 301 TTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLF 352
++ +++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F
Sbjct: 235 SSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVF 294
Query: 353 RSYDG----KLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAE 408
+ D + +D G++G +E + E L N D+ +A+ V G +P
Sbjct: 295 VNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTN 354
Query: 409 KEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGI 468
E A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 355 VEEFEFAIRMVCEPIFAKPLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGL 414
Query: 469 AISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVF---RIDRLESLLTESL 525
P + + P++ + P ++ V L ++ F ++ L L+ +SL
Sbjct: 415 GRQLYPQLDLWATAKPFLETWMAKQVGP---AAFVTALSEKAPFWAEKLPELPDLVYDSL 471
Query: 526 R 526
R
Sbjct: 472 R 472
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 225/421 (53%), Gaps = 24/421 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D+L+LLQDQ+ PF ++A + +E ELG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQVAPFDGQLAKDQMEMELGGP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
+D F++ +P+A+AS+ QV+ A+L+ SGR + +KV RP ++ I DI +++ +A L+
Sbjct: 117 LDNWFTDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLV 176
Query: 245 RK----ARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQ 300
+ AR+ V++E+ +L ELD + EA N ++ R+ + G +++ +PE+ ++
Sbjct: 177 EQHIPEARRLKP--VEVIEEYEKTLLDELDLRREASNAMQLRRNFEGSEELYVPEVILDL 234
Query: 301 TTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLF 352
++ +++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F
Sbjct: 235 SSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVF 294
Query: 353 RSYDG----KLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAE 408
+ D + +D G++G +E + E L N D+ +A+ V G +P
Sbjct: 295 VNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTN 354
Query: 409 KEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGI 468
E A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 355 VEEFEFAIRMVCEPIFAKPLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGL 414
Query: 469 AISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVF---RIDRLESLLTESL 525
P + + P++ + P ++ V L ++ F ++ L L+ +SL
Sbjct: 415 GRQLYPQLDLWATAKPFLETWMAKQVGP---AAFVTALSEKAPFWAEKLPELPDLVYDSL 471
Query: 526 R 526
R
Sbjct: 472 R 472
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 204/391 (52%), Gaps = 14/391 (3%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R A +R LGP ++K Q +S+R DL+PP +EL+LLQD++ PF + A IE
Sbjct: 53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEAS 112
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG I+ LF + P+A+AS+ QV+ ARL+++GR + +KV RP ++ I D+ ++ +
Sbjct: 113 LGCTIETLFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQAL 172
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A L+ + + L+ VV+E+ ++ EL+ EA N ++ R+ + G + + +PE++
Sbjct: 173 ARLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVFT 232
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
E +VL+ME + G +S++ L L E GV F Q+ F+HAD HPGN
Sbjct: 233 EHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGN 292
Query: 351 LFRSYDGK----LAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F SY+ ID G++G E + E L NRD+ +A+ V G +PP
Sbjct: 293 IFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPD 352
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
+ + A+ V + K + ISFG +L NL T +F ++ L+ ++L +E
Sbjct: 353 TKVDEFEFAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMQVQPQLVLLQKTLLYVE 412
Query: 467 GIAISSNPNYKVLGSTYPYIARKVLTDSSPQ 497
G+ P + + PY+ + P+
Sbjct: 413 GLGRQLYPQLDLWQTAKPYLENWMYQQVGPK 443
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 214/420 (50%), Gaps = 14/420 (3%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R A +R LGP ++K Q +S+R DL+PP +EL++LQD++ PF + A IE+
Sbjct: 53 RGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEES 112
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG P++ LF + P+A+AS+ QV+ RL+++GR + +KV RP ++ I D+ ++ +
Sbjct: 113 LGCPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTL 172
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A L+ + + L+ VV+E+ ++ EL+ EA N ++ R+ + G + +PE++
Sbjct: 173 ARLVARFVPQSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFT 232
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
E VL+ME + G +S++ L L E GV F Q+ F+HAD HPGN
Sbjct: 233 EHCREHVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGN 292
Query: 351 LFRSY---DGKLAY-IDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F SY D L ID G++G E + E L NRD+ +A+ V G +PP
Sbjct: 293 IFVSYEHPDNPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPD 352
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
+ + A+ V + K + ISFG +L NL T +F + L+ ++L +E
Sbjct: 353 TKVDEFEFAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLLQKTLLYVE 412
Query: 467 GIAISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLR 526
G+ P + + PY+ + P+ + + ++ L L+ E+LR
Sbjct: 413 GLGRQLYPQLDLWQTAKPYLENWMHEQVGPKAVWNAIKEKAPFWAEKLPELPELVYETLR 472
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR+ L LGP +VK Q +S+R DL+P + +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQS---GRVVAVKVQRPGVQAAISLDIFILH 238
G ID LF E PVA+AS+ QV+ A+L+Q G+ VAVKV RP + I D+ ++
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
+ + +T VL+ME + G +S+V L L GV F Q+ GF+HAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|B7VHC3|UBIB_VIBSL Probable ubiquinone biosynthesis protein UbiB OS=Vibrio splendidus
(strain LGP32) GN=ubiB PE=3 SV=1
Length = 544
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 218/416 (52%), Gaps = 14/416 (3%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D+L+LLQDQ+ PF ++A +E+ LG
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADQLALLQDQVAPFDGQLAKRDMEKALGGR 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
+D F++ EP+A+AS+ QV+ A+L++SGR + +KV RP ++ I D+ ++H +A ++
Sbjct: 117 LDNWFTDFDIEPLASASIAQVHTAKLKESGREIVLKVIRPDIRPVIDADLKLMHRMARIV 176
Query: 245 RKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
K+ L+ VV E+ +L ELD + EA N ++ R+ + G +++ +PE+ + ++
Sbjct: 177 AKSLPEARRLKPVEVVHEYEKTLLDELDLRREAANAIQLRRNFEGSEELYVPEVIPDLSS 236
Query: 303 RKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLFRS 354
+++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F +
Sbjct: 237 ETLMVSERIYGIQVSDIETLEANGTNMKLLAERGVTVFFTQVFRDSFFHADMHPGNVFVN 296
Query: 355 YDG----KLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKE 410
+ + +D G++G E + E L NRD+ +A+ V G +P
Sbjct: 297 PENPDNPQWIGLDCGIVGTLNSEDKRYLAENLLAFFNRDYRKVAELHVDSGWVPHDTNVN 356
Query: 411 AVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAI 470
A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 357 DFEFAIRMVCEPIFAKPLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGR 416
Query: 471 SSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLESLLTESLR 526
P + + P++ ++ PQ + V ++ L LL +SLR
Sbjct: 417 QLYPQLDLWATAKPFLETWMMNQVGPQAVINAVKERAPFWAEKLPELPELLYDSLR 472
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 214/415 (51%), Gaps = 20/415 (4%)
Query: 100 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELS 159
W +R V L R D+ R LR+ L ELGP +VK Q +S+R DL+PP +EL+
Sbjct: 31 WMRRARAVLTLGRRLDK---PRGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELA 87
Query: 160 LLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQARLRQSG---RV 216
LQD++ PF S++A +TIE+ +D++F EPVA+AS+ QV+ A + R
Sbjct: 88 RLQDRVPPFDSQIAVDTIERAFRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRD 147
Query: 217 VAVKVQRPGVQAAISLDIFILHFIAGLIRKARKFNTDLQ--AVVDEWASSLFRELDYKIE 274
VAVKV RPG++ I D+ ++H +A + + L+ VV E+ + L ELD E
Sbjct: 148 VAVKVLRPGMKTVIDKDLALMHMMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIRE 207
Query: 275 AKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIE 326
A N + R+ G+ VLIPE+Y + V++M+ + G +S+V+ L L
Sbjct: 208 ASNAAQLRRNMEGLDLVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLAR 267
Query: 327 VGVYCSFNQLLEKGFYHADPHPGNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEAC 382
GV F Q+ GF+HAD HPGN+ S + G+ +DFG++G E +E +
Sbjct: 268 DGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNF 327
Query: 383 LHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGA 442
RD+ +A+ + G +PP+ + + A+ V + + + IS G +L L
Sbjct: 328 TAFFRRDYKRVAELHIESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQ 387
Query: 443 TMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYIARKVLTDSSPQ 497
T +F+ I L+ ++L +EG+ +PN + + P++ + +L PQ
Sbjct: 388 TSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGPQ 442
>sp|B6EHA6|UBIB_ALISL Probable ubiquinone biosynthesis protein UbiB OS=Aliivibrio
salmonicida (strain LFI1238) GN=ubiB PE=3 SV=1
Length = 543
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 223/420 (53%), Gaps = 22/420 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D+L+LLQDQ+ PF ++A + +E LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQVAPFDGQLAKDQMELSLGGP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
++ F++ P+A+AS+ QV+ A+L++SGR + +KV RP ++ I DI +++ +A L+
Sbjct: 117 LENWFTDFDIVPLASASIAQVHTAKLKESGREIVLKVIRPDIRPVIEADIRLMYRMATLV 176
Query: 245 RK----ARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQ 300
K AR+ V++E+ +L ELD + EA N ++ R+ + G +++ +PE+ ++
Sbjct: 177 EKHIPEARRLKP--VEVIEEYEKTLIDELDLRREASNAMQLRRNFEGSEELYVPEVILDV 234
Query: 301 TTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLF 352
++ +++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F
Sbjct: 235 SSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVF 294
Query: 353 RSYDG----KLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAE 408
+ D + +D G++G +E + E L N D+ +A+ + G +P
Sbjct: 295 VNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYRKVAQLHIDSGWVPAETN 354
Query: 409 KEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGI 468
E A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 355 VEEFEFAIRIVCEPIFAKPLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGL 414
Query: 469 AISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVF--RIDRLESLLTESLR 526
P + + P++ + P + L AL K + ++ L L+ +SLR
Sbjct: 415 GRQLYPQLDLWATAKPFLETWMAKQIGP--AAFLTALTEKAPFWAEKLPELPDLVYDSLR 472
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 202 bits (515), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 198/384 (51%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
LR L LGP +VK Q +S+R DL+P DEL+ LQDQ+ PF S VA +E L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENAL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLR---QSGRVVAVKVQRPGVQAAISLDIFILH 238
G P+D LF + PVA+AS+ QV+ A ++ +G+ VAVKV RP + I D+ +L
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
Y E T VL+ME + G +S+V+ L L GV F Q+ GF+HAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
PT E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 218/421 (51%), Gaps = 24/421 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D L+LLQDQ+ PF E+A +E+ LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGELAKQQMEKALGGP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH----FI 240
++ F+E +P+A+AS+ QV+ ARL+ + + V +KV RP ++ I D+ ++H +
Sbjct: 117 LENWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMARIV 176
Query: 241 AGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQ 300
AG + +AR+ VV E+ +L ELD + EA N ++ R+ + G +++ +PE++ +
Sbjct: 177 AGAMPEARRLKP--VEVVREYEKTLLDELDLRREAANAIQLRRNFEGSEELYVPEVFPDF 234
Query: 301 TTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLF 352
+ V++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F
Sbjct: 235 SNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVF 294
Query: 353 ----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAE 408
+ +D G++G E + E L NRD+ +A+ V G +P
Sbjct: 295 VKPEHPENPMWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVPADTN 354
Query: 409 KEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGI 468
+ A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 355 VDEFEFAIRIVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGL 414
Query: 469 AISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVF---RIDRLESLLTESL 525
P + + P++ ++ PQ +LV + F ++ L LL +SL
Sbjct: 415 GRQLYPQLDLWETAKPFLEEWMMNQVGPQ---ALVNSIKDRAPFWAEKLPELPELLYDSL 471
Query: 526 R 526
+
Sbjct: 472 K 472
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/444 (30%), Positives = 220/444 (49%), Gaps = 43/444 (9%)
Query: 89 RRVFQVGTTFGWWFGSRFVDELMERSDQMFPVR------------------AAELRKILV 130
RR + +G+ +DEL+ R Q +PVR A LR
Sbjct: 7 RRFYTIGSVLL----RHGLDELIPRHWQPWPVRLFRRSLFWLRNRYPEQSRGARLRHAFE 62
Query: 131 ELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFS 190
LGP ++K Q +S+R DL+PP +EL++LQD++ F ++A IEQ LG PI+ LF+
Sbjct: 63 GLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQPIEALFA 122
Query: 191 EISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLIRKARKF 250
+ +P+A+AS+ QV+ ARL+++ + +KV RP ++ I+ DI ++ A ++ F
Sbjct: 123 DFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKIV----AF 178
Query: 251 ---NTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKV 305
N L+ V++E+ +L EL+ EA N ++ R+ + + +P +Y + V
Sbjct: 179 LIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSDYCRESV 238
Query: 306 LIMEWVEGQKLSEV-------KDLYLI-EVGVYCSFNQLLEKGFYHADPHPGNLFRSY-- 355
L+ME + G +S+ DL L+ E GV F Q+ F+HAD HPGN+F SY
Sbjct: 239 LVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFVSYEH 298
Query: 356 --DGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVT 413
D + ID G++G + + E L NRD+ +A+ V G +PP + E
Sbjct: 299 PHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKVEEFE 358
Query: 414 KALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSN 473
AL V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 359 SALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIEGLGRHLY 418
Query: 474 PNYKVLGSTYPYIARKVLTDSSPQ 497
P + + P++ + P+
Sbjct: 419 PQLDLWQTAKPFLEHWMRQQIGPK 442
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 199/384 (51%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
LR L LGP +VK Q +S+R DL+P +EL+ LQDQ+ PF S VA +E+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLR---QSGRVVAVKVQRPGVQAAISLDIFILH 238
G P+D LF + PVA+AS+ QV+ A ++ +G+ VAVKV RP + I D+ +L
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHP 348
Y E T VL+ME + G +S+V+ L L GV F Q+ GF+HAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
PT E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|B5XYH9|UBIB_KLEP3 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae (strain 342) GN=ubiB PE=3 SV=1
Length = 546
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 202/382 (52%), Gaps = 19/382 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
LR L ELGP ++K Q +S+R DL PP D+L+LLQD++ PF ++A IE+ +
Sbjct: 54 GTRLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDRVAPFEGKLAQQQIEKAM 113
Query: 182 -GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH-- 238
GLP+D F + S EP+A+AS+ QV+ ARL+++G+ V +KV RP + I D+ +++
Sbjct: 114 GGLPVDAWFDDFSVEPLASASIAQVHTARLKENGKEVVIKVIRPDILPIIKADMKLIYRL 173
Query: 239 --FIAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
++ L+ R+ Q VV E+ +L EL+ E+ N ++ R+ + + +PE+
Sbjct: 174 ARWVPRLLPDGRRLRP--QEVVREYEKTLLDELNLLRESANAIQLRRNFEDSPMLYVPEV 231
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHP 348
Y + + +++ME + G +S+V+ L L E GV F Q+ F+HAD HP
Sbjct: 232 YPDYCSESMMVMERIYGIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFRDSFFHADMHP 291
Query: 349 GNLFRSY----DGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+F SY D + ID G++G +E + E + NRD+ +A+ V G +P
Sbjct: 292 GNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVP 351
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E A+ V + K + ISFG +L NL T +F + L+ ++L
Sbjct: 352 PDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLY 411
Query: 465 LEGIAISSNPNYKVLGSTYPYI 486
+EG+ P + + P++
Sbjct: 412 VEGVGRQLYPQLDLWKTAKPFL 433
>sp|A6TGL5|UBIB_KLEP7 Probable ubiquinone biosynthesis protein UbiB OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=ubiB PE=3 SV=1
Length = 546
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 203/382 (53%), Gaps = 19/382 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR L ELGP ++K Q +S+R DL PP D+L+LLQD++ PF ++A IE+ +
Sbjct: 54 GARLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDRVAPFEGKLAQQQIEKAM 113
Query: 182 -GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH-- 238
GLP++ F + S EP+A+AS+ QV+ ARL+++G+ V +KV RP + I D+ +++
Sbjct: 114 GGLPVETWFDDFSVEPLASASIAQVHTARLKENGKEVVIKVIRPDILPIIKADMKLIYRL 173
Query: 239 --FIAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
++ L+ R+ Q VV E+ +L EL+ E+ N ++ R+ + + +PE+
Sbjct: 174 ARWVPRLLPDGRRLRP--QEVVREYEKTLLDELNLLRESANAIQLRRNFEDSPMLYVPEV 231
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHP 348
Y + + +++ME + G +S+V+ L L E GV F Q+ F+HAD HP
Sbjct: 232 YPDYCSESMMVMERIYGIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFRDSFFHADMHP 291
Query: 349 GNLFRSY----DGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+F SY D + ID G++G +E + E + NRD+ +A+ V G +P
Sbjct: 292 GNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVP 351
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
P E A+ V + K + ISFG +L NL T +F + L+ ++L
Sbjct: 352 PDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLY 411
Query: 465 LEGIAISSNPNYKVLGSTYPYI 486
+EG+ P + + P++
Sbjct: 412 VEGVGRQLYPQLDLWKTAKPFL 433
>sp|A7MTX4|UBIB_VIBHB Probable ubiquinone biosynthesis protein UbiB OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=ubiB PE=3 SV=1
Length = 544
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 216/421 (51%), Gaps = 24/421 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D L+LLQDQ+ PF ++A +E LG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGQLAKEQMELALGGP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH----FI 240
+ F+E +P+A+AS+ QV+ ARL+ + + V +KV RP ++ I D+ ++H +
Sbjct: 117 LQNWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMASIV 176
Query: 241 AGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQ 300
AG + +AR+ VV E+ +L ELD + EA N ++ R+ + G +++ +PE++ +
Sbjct: 177 AGAMPEARRLKP--VEVVREYEKTLLDELDLRREAANAIQLRRNFEGSEELYVPEVFPDF 234
Query: 301 TTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLF 352
+ V++ E + G ++S+++ L L E GV F Q+ F+HAD HPGN+F
Sbjct: 235 SNETVMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVF 294
Query: 353 ----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAE 408
+ +D G++G E + E L NRD+ +A+ V G +P
Sbjct: 295 VKPEHPENPMWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVPADTN 354
Query: 409 KEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGI 468
+ A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 355 VDEFEFAIRIVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGL 414
Query: 469 AISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVF---RIDRLESLLTESL 525
P + + P++ ++ PQ +LV + F ++ L LL +SL
Sbjct: 415 GRQLYPQLDLWETAKPFLEEWMMNQVGPQ---ALVNAIKDRAPFWAEKLPELPELLYDSL 471
Query: 526 R 526
R
Sbjct: 472 R 472
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 17/384 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
LR L LGP +VK Q +S+R DL+ P EL+ LQDQ+ PF S VA IE+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSL 108
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLR---QSGRVVAVKVQRPGVQAAISLDIFILH 238
G P+D +F + PVA+AS+ QV+ A L+ +G+ VAVKV RP + I D+ +L
Sbjct: 109 GAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLR 168
Query: 239 FIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
IA + L+ VV E+ L ELD EA NG + R+ + G+ +L+PEM
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 297 YVEQTTRKVLIMEWVEGQKLSEVKDLYLIEV--------GVYCSFNQLLEKGFYHADPHP 348
Y E T VL+ME + G +S+V L + V GV F Q+ GF+HAD HP
Sbjct: 229 YWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 349 GNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+ S D G+ +DFG++G + + + L RD+ +A + G +P
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
T E + A+ V + + +++IS G +L L +T +F I L+ +++
Sbjct: 349 ATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 465 LEGIAISSNPNYKVLGSTYPYIAR 488
+EG+ S +P + + PY+ R
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 199 bits (505), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 15/390 (3%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R A LR L +LGP ++K Q +S+R DL+PP DEL+ LQDQ+ PF + A IE++
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG P+ +LF+ +P+A+AS+ QV+ A+L+ SG V VKV RPG++ I D+ L +
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A + +A L+ VV ++ ++F ELD EA N + R+ + G + +P++Y
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
+ +VL+ME + G ++++ L L E GV F Q+ F+HAD HPGN
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 351 LFRS----YDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F S + + ID G++G +E ++ + RD+ +A+ + G +P
Sbjct: 294 IFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAD 353
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
+ A+ V + K +++ISFG LL L T +F + L+ ++L +E
Sbjct: 354 TKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIE 413
Query: 467 GIAISSNPNYKVLGSTYPYIARKVLTDSSP 496
G+ P+ + + P++ R + SP
Sbjct: 414 GLGRQLYPDLDLWSTAQPFLERWMRERVSP 443
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 199 bits (505), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 201/386 (52%), Gaps = 11/386 (2%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR L LGP ++K Q +S+RPDLIP Y EL+ LQD++ PF + ++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIA 241
G I++L++E EP+A+AS+ QV++ARL SG VAVKV RP + I D+ ++ F A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 242 GLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVE 299
G + + L+ VV E+ L ELD EA N + + + +++P+++ +
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 300 QTTRKVLIMEWVEGQKLSEVK-------DLY-LIEVGVYCSFNQLLEKGFYHADPHPGNL 351
T VL +EW++G +S++ DL+ L + GV F Q+ GF+HAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 352 FRSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEA 411
+ D + +DFG++G + + L NRD+ +A + G +P E
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 412 VTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAIS 471
+ A+ V + K + ISFG +L L +F I L+ ++L +EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 472 SNPNYKVLGSTYPYIARKVLTDSSPQ 497
+P+ + + P++ + + P+
Sbjct: 410 LDPDLDLWKTAKPFLVKWMNGQVGPK 435
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 196/380 (51%), Gaps = 15/380 (3%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R LR L ELGP +VK Q +S+R DL+P + L LQD++ PF SE A IE+
Sbjct: 51 RGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKS 110
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG P+ ELF+E SP+P+A+AS+ QV+ A L +G+ V VKV RPG++ I D+ +++ +
Sbjct: 111 LGAPVSELFAEFSPDPMASASVAQVHAATL-PNGQKVVVKVLRPGIEKVIRQDLGLMYLM 169
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
AGL+ K L VV ++ S++ ELD + EA N + R+ + + IP +
Sbjct: 170 AGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDW 229
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
+ T + VL+ME + G +++V L L E GV F Q+ F+HAD HPGN
Sbjct: 230 DYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGN 289
Query: 351 LF----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F D K IDFG++G + + L RD+ +A+ + G +PP
Sbjct: 290 IFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPE 349
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
A+ V + + +++ISFG L L T +F + L+ ++L +E
Sbjct: 350 TRVNEFEAAIRTVCEPIFERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKTLLNVE 409
Query: 467 GIAISSNPNYKVLGSTYPYI 486
G+ P+ + + P++
Sbjct: 410 GLGRQLYPDLDLWSTAQPFL 429
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 224/447 (50%), Gaps = 16/447 (3%)
Query: 113 RSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEV 172
R+ V L+ ++ ELGP Y+K Q +S+R DL+ + +EL++LQD++ PF S +
Sbjct: 45 RNQHKDKVGGERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSI 104
Query: 173 AFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISL 232
A IE ELG ID F + P+A+AS+ QV+ A L+ +G+ V +KV RP V+A +
Sbjct: 105 AREMIELELGTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDA 164
Query: 233 DIFILHFIAGLIRKARKFNTDLQ--AVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQD 290
D+ ++ A + L+ VV+++ +++ EL+ K+EA N +K R +
Sbjct: 165 DLHLMSQAANFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGS 224
Query: 291 VLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFY 342
+ IP MY E ++++ME +EG +S++ L L E GV F Q+ F+
Sbjct: 225 LYIPYMYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFF 284
Query: 343 HADPHPGNLF--RSYDGKLAYI--DFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFV 398
HAD HPGN+F R + YI D G+MG EE + E L NRD+ +A+ ++
Sbjct: 285 HADMHPGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 399 TLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLV 458
G + P + A +A+ V + K + ISFG +L L T +F + L+
Sbjct: 345 ESGWVSPDTDIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLL 404
Query: 459 IRSLAVLEGIAISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEGVFRIDRLE 518
++L +EG+ P + + P++ + + P+ +S + + ++ L
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEKWMSEQVGPKGMASKIKKEFPYWADKLPELP 464
Query: 519 SLLTESLRARTEKALVKKQTEDTDSRL 545
L+ ++L + + VK Q + D L
Sbjct: 465 ELVYDNL--KMGRNFVKSQNQMLDRYL 489
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 198/380 (52%), Gaps = 15/380 (3%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R LR+ L ELGP +VK Q +S+R DL+P DEL LQD++ PF+S++A IE+
Sbjct: 51 RGERLRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEES 110
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
L P+ ELF++ P+A+AS+ QV+ A L+ +G+ V VKV RPG++ I LDI ++ +
Sbjct: 111 LKSPVSELFADFQTYPMASASIAQVHAATLK-NGKEVVVKVIRPGIEKTIRLDIALMLLV 169
Query: 241 AGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A L+ + L VV ++ ++ ELD + EA N + ++ + G + + IPE+Y
Sbjct: 170 ARLVENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVYW 229
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
E T +VL+ME + G +++V+ L L E GV F Q+ F+HAD HPGN
Sbjct: 230 EMTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGN 289
Query: 351 LF----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F + + ID G++G E + L RD+ +A ++ G +P
Sbjct: 290 IFVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSGWVPGH 349
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
A+ V + + +++ISFG L L T +F + L+ ++L +E
Sbjct: 350 TRVNEFEAAIRTVCEPIFERPLKDISFGQFLMRLFQTARRFDMEVQPQLVLLQKTLLNIE 409
Query: 467 GIAISSNPNYKVLGSTYPYI 486
G+ P+ + + P++
Sbjct: 410 GLGRQLYPDLDLWSTAQPFL 429
>sp|C3LPS7|UBIB_VIBCM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=ubiB PE=3 SV=1
Length = 544
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D L++LQD++ PF A IE+ELG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
++ F + +P+A+AS+ QV+ A+L+ +GR V +KV RP ++ I DI +++ +A ++
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 245 RKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
KA L+ VV E+ +L ELD + EA N ++ R+ + +++ +PE+ +
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFENSEELYVPEVLTDFCN 236
Query: 303 RKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHPGNLF-- 352
V++ E + G ++S++ L+ L E GV F Q+ F+HAD HPGN+F
Sbjct: 237 ETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVN 296
Query: 353 --RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKE 410
+ + +D G++G E + E L NRD+ +A+ V G +P +
Sbjct: 297 PNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVD 356
Query: 411 AVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAI 470
A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 357 EFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGR 416
Query: 471 SSNPNYKVLGSTYPYIARKVLTDSSPQ 497
P + + P++ + + PQ
Sbjct: 417 QLYPQLDLWQTAKPFLEKWMANQVGPQ 443
>sp|Q9KVQ4|UBIB_VIBCH Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=ubiB PE=3 SV=1
Length = 544
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D L++LQD++ PF A IE+ELG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
++ F + +P+A+AS+ QV+ A+L+ +GR V +KV RP ++ I DI +++ +A ++
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 245 RKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
KA L+ VV E+ +L ELD + EA N ++ R+ + +++ +PE+ +
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFENSEELYVPEVLTDFCN 236
Query: 303 RKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHPGNLF-- 352
V++ E + G ++S++ L+ L E GV F Q+ F+HAD HPGN+F
Sbjct: 237 ETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVN 296
Query: 353 --RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKE 410
+ + +D G++G E + E L NRD+ +A+ V G +P +
Sbjct: 297 PNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVD 356
Query: 411 AVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAI 470
A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 357 EFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGR 416
Query: 471 SSNPNYKVLGSTYPYIARKVLTDSSPQ 497
P + + P++ + + PQ
Sbjct: 417 QLYPQLDLWQTAKPFLEKWMANQVGPQ 443
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 213/419 (50%), Gaps = 21/419 (5%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R A LR L +LGP ++K Q +S+R DL+PP DEL LLQD++ PF + A IE++
Sbjct: 56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQ 115
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG + E+FS EP+A+AS+ QV+ ARL+ +G V VKV RPG++ I+ D+ L I
Sbjct: 116 LGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 241 AGLIRKARKFNTDLQAV--VDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A +A L V V ++ +++ ELD EA N + R+ + + + +P++Y
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYW 234
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
+ KVL+ME + G ++++ L L E GV F Q+ F+HAD HPGN
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGN 294
Query: 351 LF----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F + + + ID G++G E ++ RD+ +A+ + G +P
Sbjct: 295 IFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAN 354
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
+ A+ V + K +++ISFG +L L T +F + L+ ++L +E
Sbjct: 355 TKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIE 414
Query: 467 GIAISSNPNYKVLGSTYPYIARKVLTDSSPQ-----LKSSLVALLYKEGVFRIDRLESL 520
G+ P+ + + PY+ R + SP+ L S + L + G+ R D LE L
Sbjct: 415 GLGRQLYPDLDLWSTAKPYLERWMRDRYSPKAVFGNLHSQVEQLPHLAGMTR-DLLERL 472
>sp|C5BCA6|UBIB_EDWI9 Probable ubiquinone biosynthesis protein UbiB OS=Edwardsiella
ictaluri (strain 93-146) GN=ubiB PE=3 SV=1
Length = 543
Score = 195 bits (496), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 211/420 (50%), Gaps = 30/420 (7%)
Query: 84 PLILLRRVFQVGTTFGWWFGSRFVDE-LMERSDQMFPVRAAELRKILVELGPAYVKIAQA 142
PL+ + ++G +W +R D+ L ER LR L LGP ++K Q
Sbjct: 26 PLMRITLPLRIGRRCLFWMRNRHGDKPLGER-----------LRLALQTLGPVWIKFGQM 74
Query: 143 VSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASL 202
+S+R DL P+ D+L+LLQD++ PF +A IE LG P+++ F + + +A+AS+
Sbjct: 75 LSTRRDLFAPAIADQLALLQDRVAPFDGALARRQIEASLGGPLEQWFDDFDSQALASASI 134
Query: 203 GQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLIRK----ARKFNTDLQAVV 258
QV+ A LR++GR V +KV RP +Q I D+ +++ +AG + K R+ + VV
Sbjct: 135 AQVHTATLRENGREVVLKVIRPDIQPIIRADVRLMYRLAGWVPKLLPDGRRLRP--REVV 192
Query: 259 DEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSE 318
E+ +L EL+ EA N ++ R+ + + IPE++ + VL+ME + G +S+
Sbjct: 193 REYEKTLLDELNLLREAANAIQLRRNFDASPMLYIPEVFSDYCRESVLVMERIYGVPVSD 252
Query: 319 VKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNLFRSY----DGKLAYIDFGM 366
+ L L E GV F Q+ F+HAD HPGN+F SY D + ID G+
Sbjct: 253 IAALRAQNTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPQDPQYIGIDCGI 312
Query: 367 MGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAK 426
+G + + E + NRD+ +A+ V G +PP E A+ V + K
Sbjct: 313 VGSLNKADKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNIEEFEFAIRTVCEPIFEK 372
Query: 427 GVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYI 486
+ ISFG +L NL T +F + L+ ++L +EG+ P + + P++
Sbjct: 373 PLDQISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWTTAKPFL 432
>sp|A8ACY4|UBIB_CITK8 Probable ubiquinone biosynthesis protein UbiB OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ubiB
PE=3 SV=1
Length = 546
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 199/379 (52%), Gaps = 19/379 (5%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL-GL 183
LR L ELGP ++K Q +S+R DL PP D+L+LLQD++ PF +A IE+ + GL
Sbjct: 57 LRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGALAKAQIEEAMGGL 116
Query: 184 PIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH----F 239
P++E F + +P+A+AS+ QV+ ARL+ +G+ V +KV RP + I D+ +++ +
Sbjct: 117 PVEEWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARW 176
Query: 240 IAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVE 299
+ L+ R+ VV E+ +L EL+ E+ N ++ R+ + + +PE+Y +
Sbjct: 177 VPRLLPDGRRLRP--TEVVREYEKTLIDELNLLRESANAIQLRRNFENSPMLYVPEVYSD 234
Query: 300 QTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGNL 351
++ +++ME + G +S+V L L E GV F Q+ F+HAD HPGN+
Sbjct: 235 YCSQDMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNI 294
Query: 352 FRSYDG----KLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTA 407
F SY+ K ID G++G +E + E + NRD+ +A+ V G +PP
Sbjct: 295 FVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDT 354
Query: 408 EKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEG 467
E A+ V + K + ISFG +L NL T +F + L+ ++L +EG
Sbjct: 355 NVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEG 414
Query: 468 IAISSNPNYKVLGSTYPYI 486
+ P + + P++
Sbjct: 415 VGRQLYPQLDLWKTAKPFL 433
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 195/381 (51%), Gaps = 18/381 (4%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR L +LGP ++K Q +S+R DL PP D+L++LQD++ PF A IE L
Sbjct: 54 GARLRLALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSL 113
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILH--- 238
G P++ F + P+A+AS+ QV+ A L+++GR V +KV RP + I D+ +++
Sbjct: 114 GAPVESQFDDFDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLA 173
Query: 239 -FIAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMY 297
++ L+ R+ Q VV ++ +L EL+ EA N ++ R+ + Q + +PE+Y
Sbjct: 174 RWVPRLLPDGRRLRP--QEVVADYEKTLLDELNLLREAANAIQLRRNFADGQMLYVPEIY 231
Query: 298 VEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPG 349
+ + +L+ME + G +S+V L L E GV F Q+ F+HAD HPG
Sbjct: 232 SDYCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPG 291
Query: 350 NLFRSY----DGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPP 405
N+F SY D + ID G++G +E + E + NRD+ +A+ V G +P
Sbjct: 292 NIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPA 351
Query: 406 TAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVL 465
E A+ V + K + ISFG +L NL T +F + L+ ++L +
Sbjct: 352 DTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYV 411
Query: 466 EGIAISSNPNYKVLGSTYPYI 486
EG+ P + + P++
Sbjct: 412 EGVGRQLYPQLDLWKTAKPFL 432
>sp|A5F4G3|UBIB_VIBC3 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=ubiB PE=3 SV=1
Length = 544
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 125 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLP 184
LR L ELGP ++K Q +S+R DL PP D L++LQD++ PF A IE+ELG P
Sbjct: 57 LRLALQELGPVWIKFGQMMSTRRDLFPPYIADPLAMLQDKVAPFDGLQAKQLIEEELGAP 116
Query: 185 IDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIAGLI 244
++ F + +P+A+AS+ QV+ A+L+ +GR V +KV RP ++ I DI +++ +A ++
Sbjct: 117 LETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIV 176
Query: 245 RKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVEQTT 302
KA L+ VV E+ +L ELD + EA N ++ R+ + +++ +PE+ +
Sbjct: 177 AKALPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFENSEELYVPEVLTDFCN 236
Query: 303 RKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPHPGNLF-- 352
V++ E + G ++S++ L+ L E GV F Q+ F+HAD HPGN+F
Sbjct: 237 ETVMVSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVN 296
Query: 353 --RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKE 410
+ + +D G++G E + E L NRD+ +A+ V G +P +
Sbjct: 297 PNHPENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVD 356
Query: 411 AVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAI 470
A+ V + AK + ISFG +L NL T +F + L+ ++L +EG+
Sbjct: 357 EFEVAIRMVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGR 416
Query: 471 SSNPNYKVLGSTYPYIARKVLTDSSPQ 497
P + + P++ + + PQ
Sbjct: 417 QLYPQLDLWQTAKPFLEKWMANQVGPQ 443
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 208/404 (51%), Gaps = 18/404 (4%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R A LR L +LGP ++K Q +S+R DL+P DEL LLQD++ PF + A IE++
Sbjct: 56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQ 115
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG + E+FS EP+A+AS+ QV+ ARL+ SG V VKV RPG++ I+ D+ L I
Sbjct: 116 LGAKVGEVFSRFDVEPLASASVAQVHAARLK-SGEEVVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 241 AGLIRKARKFNTDLQAV--VDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYV 298
A +A L V V ++ +++ ELD EA N + R+ + G + + +P++Y
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 234
Query: 299 EQTTRKVLIMEWVEGQKLSEVKDL--------YLIEVGVYCSFNQLLEKGFYHADPHPGN 350
+ KVL+ME + G ++++ L L E GV F Q+ F+HAD HPGN
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGN 294
Query: 351 LF----RSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPT 406
+F + + + ID G++G E ++ + RD+ +A+ + G +P
Sbjct: 295 IFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQ 354
Query: 407 AEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLE 466
+ A+ V + K +++ISFG +L L T +F + L+ ++L +E
Sbjct: 355 TKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIE 414
Query: 467 GIAISSNPNYKVLGSTYPYIARKVLTDSSPQLKSSLVALLYKEG 510
G+ P+ + + P++ R + SP+ +++ LY +
Sbjct: 415 GLGRQLYPDLDLWSTAKPFLERWMRERMSPK---AVIGNLYNQA 455
>sp|Q6DAQ5|UBIB_ERWCT Probable ubiquinone biosynthesis protein UbiB OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=ubiB PE=3 SV=1
Length = 546
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 208/407 (51%), Gaps = 21/407 (5%)
Query: 97 TFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLD 156
TF G R + L R M P+ LR L ELGP ++K Q +S+R DL PP+ D
Sbjct: 31 TFPLRVGRRLLFWLPNRHRNM-PL-GERLRLALQELGPVWIKFGQMMSTRRDLFPPAIAD 88
Query: 157 ELSLLQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQARLRQSGR 215
+L++LQD++ PF ++A IE + G+P++E F + +P+A+AS+ QV+ ARL+ +G+
Sbjct: 89 QLAMLQDKVEPFDGKLAREQIELAMEGIPLEEWFDDFDIKPLASASIAQVHTARLKSTGK 148
Query: 216 VVAVKVQRPGVQAAISLDIFILHFIAG----LIRKARKFNTDLQAVVDEWASSLFRELDY 271
+ +KV RP + I D+ ++ +AG L+ R+ + VV E+ +L EL+
Sbjct: 149 EIVIKVIRPDILPVIKADMRLMKRLAGWLPRLLPDGRRLRP--REVVMEYEKTLLDELNL 206
Query: 272 KIEAKNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDL--------Y 323
EA N ++ R+ + + +PE+Y + +L+ME + G +S+V L
Sbjct: 207 LREAANAIQLRRNFENSPMLYVPEIYSDYCRESMLVMERIYGIPVSDVDALKANGTDMKL 266
Query: 324 LIEVGVYCSFNQLLEKGFYHADPHPGNLFRSYDG----KLAYIDFGMMGEFKEELREGFI 379
L E GV F Q+ F+HAD HPGN+F SYD + ID G++G +E +
Sbjct: 267 LAERGVQVFFTQVFRDSFFHADMHPGNIFISYDHPEDPQYIGIDCGIVGSLNKEDKRYLA 326
Query: 380 EACLHLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGN 439
E + NRD+ +A+ V G +PP A+ V + K + ISFG +L N
Sbjct: 327 ENFIAFFNRDYRKVAELHVDSGWVPPDTNVADFEFAIRTVCEPIFEKPLAEISFGHVLLN 386
Query: 440 LGATMYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYI 486
L T +F + L+ ++L +EG+ P + + P++
Sbjct: 387 LFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFL 433
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 208/393 (52%), Gaps = 19/393 (4%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
RA LR L +LGP ++K Q +S+R DL+P DEL+ LQD++ PF+ + + IE++
Sbjct: 56 RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQ 115
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFI 240
LG +DE F+ EP+A+AS+ QV+ A+L+ +G V VKV RPG++A I D+ L+
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLF 174
Query: 241 AGLIRK----ARKFNTDLQAVVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEM 296
A L + AR+ + L VV ++ +++ ELD EA N + ++ + G + +P++
Sbjct: 175 ARLAERASTEARRLH--LVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQI 232
Query: 297 YVEQTTRKVLIMEWVEGQKLSEV-------KDLYLI-EVGVYCSFNQLLEKGFYHADPHP 348
Y + KVL+ME + G ++++ DL L+ E GV F Q+ F+HAD HP
Sbjct: 233 YWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHP 292
Query: 349 GNLFRS----YDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLP 404
GN+F S +D + ID G++G + ++ L RD+ +A+ + G +P
Sbjct: 293 GNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVP 352
Query: 405 PTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAV 464
+ A+ V + K +++ISFG LL L T +F + L+ ++L
Sbjct: 353 ADTQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLN 412
Query: 465 LEGIAISSNPNYKVLGSTYPYIARKVLTDSSPQ 497
+EG+ P + + P++ R + SP+
Sbjct: 413 IEGLGRQLYPELDLWTTAKPFLERWMRKRMSPK 445
>sp|B5RFM6|UBIB_SALG2 Probable ubiquinone biosynthesis protein UbiB OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=ubiB PE=3
SV=1
Length = 546
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 205/403 (50%), Gaps = 29/403 (7%)
Query: 101 WFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSL 160
W +R D+L+ LR L ELGP ++K Q +S+R DL PP D+L+L
Sbjct: 43 WMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLAL 92
Query: 161 LQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAV 219
LQD++ PF +A IE+ + GLP+D F + +P+A+AS+ QV+ ARL+ +G+ V +
Sbjct: 93 LQDKVAPFDGRLAKAQIEEAMGGLPVDAWFDDFDIQPLASASIAQVHTARLKSNGKEVVI 152
Query: 220 KVQRPGVQAAISLDIFILH----FIAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEA 275
KV RP + I D+ +++ ++ L+ R+ VV E+ +L EL+ E+
Sbjct: 153 KVIRPDILPVIQADLKLIYRLARWVPRLLPDGRRLRP--TEVVREYEKTLIDELNLLRES 210
Query: 276 KNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEV 327
N ++ R+ + + IPE+Y + ++ +++ME + G +S+V L L E
Sbjct: 211 ANAIQLRRNFENSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVAALEKNGTNMKLLAER 270
Query: 328 GVYCSFNQLLEKGFYHADPHPGNLFRSYDG----KLAYIDFGMMGEFKEELREGFIEACL 383
GV F Q+ F+HAD HPGN+F S++ + ID G++G +E + E +
Sbjct: 271 GVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLAENFI 330
Query: 384 HLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGAT 443
NRD+ +A+ V G +PP E A+ V + K + ISFG +L NL T
Sbjct: 331 AFFNRDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNT 390
Query: 444 MYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYI 486
+F + L+ ++L +EG+ P + + P++
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL 433
>sp|B5QW75|UBIB_SALEP Probable ubiquinone biosynthesis protein UbiB OS=Salmonella
enteritidis PT4 (strain P125109) GN=ubiB PE=3 SV=1
Length = 546
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 205/403 (50%), Gaps = 29/403 (7%)
Query: 101 WFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSL 160
W +R D+L+ LR L ELGP ++K Q +S+R DL PP D+L+L
Sbjct: 43 WMPNRHKDKLL----------GERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLAL 92
Query: 161 LQDQITPFSSEVAFNTIEQEL-GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAV 219
LQD++ PF +A IE+ + GLP+D F + +P+A+AS+ QV+ ARL+ +G+ V +
Sbjct: 93 LQDKVAPFDGRLAKAQIEEAMGGLPVDAWFDDFDIQPLASASIAQVHTARLKSNGKEVVI 152
Query: 220 KVQRPGVQAAISLDIFILH----FIAGLIRKARKFNTDLQAVVDEWASSLFRELDYKIEA 275
KV RP + I D+ +++ ++ L+ R+ VV E+ +L EL+ E+
Sbjct: 153 KVIRPDILPVIQADLKLIYRLARWVPRLLPDGRRLRP--TEVVREYEKTLIDELNLLRES 210
Query: 276 KNGLKFRQLYGGIQDVLIPEMYVEQTTRKVLIMEWVEGQKLSEVKDL--------YLIEV 327
N ++ R+ + + IPE+Y + ++ +++ME + G +S+V L L E
Sbjct: 211 ANAIQLRRNFENSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVAALEKNGTNMKLLAER 270
Query: 328 GVYCSFNQLLEKGFYHADPHPGNLFRSYDG----KLAYIDFGMMGEFKEELREGFIEACL 383
GV F Q+ F+HAD HPGN+F S++ + ID G++G +E + E +
Sbjct: 271 GVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLAENFI 330
Query: 384 HLVNRDFDALAKDFVTLGLLPPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGAT 443
NRD+ +A+ V G +PP E A+ V + K + ISFG +L NL T
Sbjct: 331 AFFNRDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNT 390
Query: 444 MYKFKFRIPSYFSLVIRSLAVLEGIAISSNPNYKVLGSTYPYI 486
+F + L+ ++L +EG+ P + + P++
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL 433
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 200/386 (51%), Gaps = 11/386 (2%)
Query: 122 AAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQEL 181
A LR L LGP ++K Q +S+RPDLIP Y EL+ LQD++ PF + ++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 182 GLPIDELFSEISPEPVAAASLGQVYQARLRQSGRVVAVKVQRPGVQAAISLDIFILHFIA 241
G I++L++E EP+A+AS+ QV++ARL SG VAVKV RP + I D+ ++ F A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 242 GLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPEMYVE 299
+ + L+ VV E+ L ELD EA N + + + +++P+++ +
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 300 QTTRKVLIMEWVEGQKLSEVK-------DLY-LIEVGVYCSFNQLLEKGFYHADPHPGNL 351
T VL +EW++G ++++ DL+ L + GV F Q+ GF+HAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 352 FRSYDGKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLLPPTAEKEA 411
+ D + +DFG++G + + L NRD+ +A + G +P E
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 412 VTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLAVLEGIAIS 471
+ A+ V + K + ISFG +L L +F I L+ ++L +EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 472 SNPNYKVLGSTYPYIARKVLTDSSPQ 497
+P+ + + P++ + + P+
Sbjct: 410 LDPDLDLWKTAKPFLVKWMNGQVGPK 435
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 202/394 (51%), Gaps = 17/394 (4%)
Query: 121 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQE 180
R LR+ L LGP +VK Q +S+R DL+PP DEL+LLQD++ PF +VA TIE+
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 181 LGLPIDELFSEISPEPVAAASLGQVYQARLRQ---SGRVVAVKVQRPGVQAAISLDIFIL 237
PI E+F +PVA+AS+ QV+ A +R R VAVKV RPG+ I D+ ++
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 238 HFIAGLIRKARKFNTDLQA--VVDEWASSLFRELDYKIEAKNGLKFRQLYGGIQDVLIPE 295
+AG + L+ VV E+ + L ELD EA N + R+ G+ VLIPE
Sbjct: 169 RMMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPE 228
Query: 296 MYVEQTTRKVLIMEWVEGQKLSEVKDLY--------LIEVGVYCSFNQLLEKGFYHADPH 347
++ + +VL+ME ++G +++V+ L L GV F Q+ GF+HAD H
Sbjct: 229 VFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMH 288
Query: 348 PGNLFRSYD----GKLAYIDFGMMGEFKEELREGFIEACLHLVNRDFDALAKDFVTLGLL 403
PGN+ S G+ +DFG++G E +E + RD+ +A+ + G +
Sbjct: 289 PGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWV 348
Query: 404 PPTAEKEAVTKALTGVFQNAVAKGVRNISFGDLLGNLGATMYKFKFRIPSYFSLVIRSLA 463
P + A+ V + + ++ IS G +L L T +F+ I L+ ++L
Sbjct: 349 PAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLL 408
Query: 464 VLEGIAISSNPNYKVLGSTYPYIARKVLTDSSPQ 497
+EG+ +P+ + + P++ + +L PQ
Sbjct: 409 NIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGPQ 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,480,212
Number of Sequences: 539616
Number of extensions: 9581812
Number of successful extensions: 30880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 29832
Number of HSP's gapped (non-prelim): 349
length of query: 704
length of database: 191,569,459
effective HSP length: 125
effective length of query: 579
effective length of database: 124,117,459
effective search space: 71864008761
effective search space used: 71864008761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)