BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005276
(704 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74828|ESF1_SCHPO Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=esf1 PE=1 SV=1
Length = 682
Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 234/657 (35%), Positives = 331/657 (50%), Gaps = 95/657 (14%)
Query: 25 IITDSRFASVHSDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNLKT 84
++ D RF SVHSDPRF + + KV +D RF + DK+F +TA D+ G+P K
Sbjct: 19 VVADPRFQSVHSDPRFSRLKRGNFKVKVDERFKSLKEDKDF-KTTASVDRYGRPLNQDKA 77
Query: 85 SKSSLQHYYRIEAEDKKSDEDEEIEEEERRNE-----------TDSESELKEAADVSSGS 133
+K + Y S E EI + E TD ESE +E D + G
Sbjct: 78 TKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEESEDEEVYDPARGE 137
Query: 134 GT---EEEDDDDVSESTTDDEEEDVDFDEGPEEEEEAIPEIDNETHRLAIVNMDWRHVKA 190
G E D+ +ES T+ + E + E EE IP +ET+RLA+VNMDW +++A
Sbjct: 138 GIISTSESSDESDAESETEAQPEISEL--AGIEPEENIPR-GSETNRLAVVNMDWDNLQA 194
Query: 191 VDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGP-------------------- 230
VDL V LSSF P G++L V++YPSEFG RM E V+GP
Sbjct: 195 VDLFVALSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDIFTPADNQPSSAELHEA 254
Query: 231 --VGLFDSQNENSDDED-------NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLY 281
G FD+ + D+ED +E D KLR Y+ RLRYYYAVVECDS TA +Y
Sbjct: 255 QKFG-FDNNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIY 313
Query: 282 RACDGVEFERSSNKLDLRFIPDTMEF-KYPPRDVATEAPANYGGLDFFTKALQHSNVQLS 340
CDG E+E S+N DLRFIPD + F R+V T+AP Y DF T ALQHS V+LS
Sbjct: 314 ETCDGAEYETSANIYDLRFIPDDVTFDDDESREVCTKAPEKYEPRDFVTDALQHSKVKLS 373
Query: 341 WDDDEPDRVKTLKRKFNADQVAELELKEFLASDESETDDEDDNVADEQSDKKSKKQDKYR 400
WD ++P R +K+ F + + +L+ ++AS ESE DED +V + +Y+
Sbjct: 374 WDAEDPHRKDLIKKAFTSQDIEDLDFSAYIASSESE--DEDVDVI----------RSRYQ 421
Query: 401 ALLESGDGSD---------EDGEEDGQD--MEVTFNTGLEDISKRILEKKDKKSETIWEA 449
LL SGD D +D + +G + MEVTF +G D+ +K ET E
Sbjct: 422 KLL-SGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGF-DVDNNA--NSSEKDETTIEK 477
Query: 450 YLRKRREKKKAGK--NKSKYSSDDEASDTDREAIEEPDDFFVEEPKGKKGEEAGGNHRRE 507
Y RK E+K+ K + K + DDE +D D ++P K + + N + +
Sbjct: 478 YKRKAAERKQRRKELRQLKKTKDDEGEGSDV-------DLGFDDPFFKDKDASRNNKKNK 530
Query: 508 EKEQQDTDKEATASTAELELLLADDKGAENGLKGYNMKPKKRKGKKGKEVPDEDKIPT-- 565
+ + + AS ELE L+ +D+ L ++MK + K K + K
Sbjct: 531 KGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKNRKLKKKASNLE 590
Query: 566 -------ADYDDPRFSALFTSPLFALDPTDPQFKRSAVYARQIAQ-KKQKGDQREQV 614
AD DPRF+AL+T+ FALDPT+P FKR+ + + + +K++ +Q EQ
Sbjct: 591 GLQEGFEADVSDPRFAALYTNHNFALDPTNPHFKRTKTVEKIMDESRKRRSNQLEQT 647
>sp|Q06344|ESF1_YEAST Pre-rRNA-processing protein ESF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ESF1 PE=1 SV=1
Length = 628
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 208/640 (32%), Positives = 306/640 (47%), Gaps = 117/640 (18%)
Query: 23 KKIITDSRFASVHSDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNL 82
KK D+RFA ++SDP+F+N + K+ +DSRF + + S DK G+ KN
Sbjct: 7 KKEGVDARFAGIYSDPKFKNTKTKDHKIKLDSRFSKKDLEVQHKSKV---DKYGRKIKNA 63
Query: 83 KTSKS--SLQHYYRIEAEDKKSDEDEEIEEEERRNETDSESELKEAADVSSGSGTEEEDD 140
+ ++ Y+ EAE N+ DSE K D + G E D
Sbjct: 64 QNNRELEDFDKYFEKEAE----------------NDEDSEVNAKTVVDRARG----EVPD 103
Query: 141 DDVSES--------TTDDEEEDVDFDEGPEEEEEAIPEIDNETHRLAIVNMDWRHVKAVD 192
D VS S + E E +E E E A PE + + LA+VN+DW HVK+ D
Sbjct: 104 DYVSSSDEFTSSDSESSGESEVESEEENEVEIENAKPESGDISKNLAVVNLDWDHVKSED 163
Query: 193 LLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGP---------------------- 230
L++ SSF+PK G+I VA+YPSEFG +RM+ EEV GP
Sbjct: 164 LMITFSSFVPKGGKIERVAIYPSEFGKERMQREEVEGPPKELFQKKNKNKTSKKKKTDDS 223
Query: 231 -----VGLFDSQNENSDDEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACD 285
+G+ D E D+D +D LR Y+ RLRYYYA+V C + T+ +Y CD
Sbjct: 224 DSDMDIGIKDLYEEGDADKD---VDSRALRQYQLDRLRYYYAIVYCSDTTTSKAIYDNCD 280
Query: 286 GVEFERSSNKLDLRFIPDTMEFKYPPRDVATEAPANYGGLDFFTKALQHSNVQLSWDDDE 345
G E+E ++N DLR++PD M F RD + P NY F T ALQHS+V+L+WD+
Sbjct: 281 GTEYESTANMFDLRYVPDGMTFDDDVRDECSILPKNYRPHQFSTDALQHSSVKLTWDETP 340
Query: 346 PDRVKTLKRKFNADQVAELELKEFLASDESETDDEDDNVADEQSDKKSKKQDKYRALLES 405
DRV+ KR F ++ +++ K +LASD DE D DE++ ++K ++L+
Sbjct: 341 ADRVEVAKRAFTQKEIDDMDFKAYLASDS----DESDGQVDEEA------KNKLKSLV-- 388
Query: 406 GD---------GSDEDGEEDGQDMEVTFNTGLEDISKRILEKKDKKSETIWEAYLRKRRE 456
GD +DED E DME+TF LE +++ E K+ ET E RK +E
Sbjct: 389 GDFGFNSKKETPNDEDEE---VDMEITFTPALEGGNEKSSEDKE---ETTIEKIRRKEKE 442
Query: 457 KKKAGKNKSKYSSDDEASDTDREAIEEPDDFFVEEPKGKKGEEAGGNHRREEKE-QQDTD 515
++KA K K K D K K + H +E+E +++
Sbjct: 443 RRKARKQKVKELKQQSEKD-----------------KKSKLKSVNKKHTNDEEEIEKNAK 485
Query: 516 KEATASTAELELLLADDKGAENGLKGYNM----KPKKRKGKKG----KEVPDEDKIPTAD 567
+A + + +G N +NM + +K K KKG KE ED T D
Sbjct: 486 SKAELELLMDDDDDTETQGTINNKAHFNMNEILRSEKEKHKKGRYQKKERIVEDTF-TPD 544
Query: 568 YDDPRFSALFTSPLFALDPTDPQFKRSAVYARQIAQKKQK 607
+DPRF +F FA+DPT P+FK + ++ + ++ ++
Sbjct: 545 LEDPRFKEVFEDHDFAIDPTQPEFKGTQAMSKILKERSKR 584
>sp|Q76MT4|ESF1_RAT ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1
Length = 842
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 200/573 (34%), Positives = 306/573 (53%), Gaps = 64/573 (11%)
Query: 128 DVSSGSG---TEEEDDDDVSESTTDDEEEDVDFDEGPEEEEEAIPEIDNETHRLAIVNMD 184
D++ G G T ED+DD++ D E+ F+ E ++ P D T RLA+ NMD
Sbjct: 293 DLARGKGNVETSSEDEDDLA----DLFPEEPGFEHAWRELDKDAPRADEITRRLAVCNMD 348
Query: 185 WRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244
W +KA DLL + +SF PK G + SV +YPSEFG QRMKEE+++GPV L D
Sbjct: 349 WDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQRMKEEQIQGPVELLSIPE---DAP 405
Query: 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDT 304
+ D EKLR Y+ RL+YYYAVVECDS TA +Y CDG+EFE S + +DLRFIPD
Sbjct: 406 EKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDD 465
Query: 305 MEFKYPPRDVATEAPANYGGLDFFTK-ALQHSNVQLSWDDDEPDRVKTLKRKFNADQVAE 363
+ F P+D A+E +FT A+ S V+++WD+ + +R+ TL RKF D++ +
Sbjct: 466 ITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDHERITTLNRKFKKDELLD 525
Query: 364 LELKEFLA------SDESETDDEDDNVADEQS-DKKSKKQD-----KYRALLESGDGSDE 411
++ + +LA + E + +D V+ E KKS+K D KYR LL+ ++
Sbjct: 526 MDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDDEEQIAKYRQLLQVIQEKEK 585
Query: 412 DGEEDGQDMEVTFNTGL----EDISKRILEKKDKKSETIWEAYLRKRREKKKAGKNKSKY 467
G+E+ +ME+ + GL E++ K LE KDK T WE +L K++EKK+ K +
Sbjct: 586 KGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKL--TPWEQFLEKKKEKKRLKKKQKAL 643
Query: 468 ----SSDDEASDTDREAIEEPDDFFVEEPKGKKGEEAGGNHRREEKEQQDTDKEATASTA 523
S D+ SD D D +F EE K K G + ++ + + E A
Sbjct: 644 AEEASEDEIPSDVDLN-----DPYFAEEVK-KIGIKKKSMKSAKDGATSEEETELEKQKA 697
Query: 524 ELELLLADDKGAENGLKGYNM---------KPKKRKGKKGKEVPDEDKIPTADYDDPRFS 574
E+ LL+ D++ E+ K +N KK+K K+ ED + D RF
Sbjct: 698 EMALLVMDEE--EDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELLEDDF-EVNVSDARFQ 754
Query: 575 ALFTSPLFALDPTDPQFKRSAVYARQIAQKKQKGDQREQVIRESTKIPTNAQMPSDDPDR 634
A++TS LF LDP+DP FK++ + + +K + +Q+E+ + ++ + AQ + P +
Sbjct: 755 AMYTSHLFNLDPSDPNFKKTKAMEKILEEKARHREQKEERLIQAVE---RAQQDTGKPAQ 811
Query: 635 HRHMKSDVSSLKRENHEVSLLVKSLKMKSKQIQ 667
+ M + +S+L+KS+K K++Q Q
Sbjct: 812 KQPM----------DPALSMLIKSVKNKTEQFQ 834
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 IITDSRFASVHSDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNLKT 84
I+ D RF V DPRF +P++ KV ID RF MF DK F + A DKRG+P + +
Sbjct: 7 IMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYA-VDKRGRPISH--S 63
Query: 85 SKSSLQHYY 93
+ L+ +Y
Sbjct: 64 TTEDLKRFY 72
>sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1
Length = 851
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 198/580 (34%), Positives = 312/580 (53%), Gaps = 77/580 (13%)
Query: 128 DVSSGSG---TEEEDDDDVSESTTDDEEEDVDFDEGPEEEEEAIPEIDNETHRLAIVNMD 184
D++ G G T ED+DD T D E+ F+ E ++ P D T RLA+ NMD
Sbjct: 301 DLARGKGNIETSSEDEDD----TADLFPEESGFEHAWRELDKDAPRADEITRRLAVCNMD 356
Query: 185 WRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244
W +KA DLL + +SF PK G I SV +YPSEFG +RMKEE+V+GPV L D
Sbjct: 357 WDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPE---DAP 413
Query: 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDT 304
+ D EKLR Y+ RL+YYYAVV+CDS TA +Y CDG+EFE S + +DLRFIPD
Sbjct: 414 EKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDD 473
Query: 305 MEFKYPPRDVATEAPANYGGLDFFTK-ALQHSNVQLSWDDDEPDRVKTLKRKFNADQVAE 363
+ F P+DVA+E +FT A+ S V+++WD+ + +R+ L RKF +++ +
Sbjct: 474 ITFDDEPKDVASEVNLTAYKPKYFTSAAMGTSTVEITWDETDHERITMLNRKFKKEELLD 533
Query: 364 LELKEFLASDESETD--------DEDDNVADEQSDKKSKKQD-----KYRALLESGDGSD 410
++ + +LAS + + D+ NV ++ KKS+K D KYR LL+ +
Sbjct: 534 MDFQAYLASSSEDEEEIEEELQGDDGVNVEEDGKTKKSQKDDEEQIAKYRQLLQVIQEKE 593
Query: 411 EDGEEDGQDMEVTFNTGL----EDISKRILEKKDKKSETIWEAYLRKRREKKKAGKNKSK 466
+ G+E+ +ME+ + GL E++ K LE KDK T WE +L K++EKK+ + + K
Sbjct: 594 KKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKL--TPWEQFLEKKKEKKRLKRKQ-K 650
Query: 467 YSSDDEASDTDREAIEEPDDFFVEEPKGKKGEEAGGNHRREEKEQQDTDKEATAST---- 522
+++ + + ++ D +F EE K + G N + + + T E
Sbjct: 651 ALAEEASEEELPSDVDLNDPYFAEEVK-----QIGINKKSVKSAKDGTSPEEEIEIERQK 705
Query: 523 AELELLLADDKGAENGLKGYNM----------KPKKRKGKKGKEVPDEDKIPTADYDDPR 572
AE+ LL+ D+ E+ K +N K KK++ K KE+ ++D + +D R
Sbjct: 706 AEMALLMMDED--EDSKKHFNYNKIVEHQNLSKKKKKQLMKKKELIEDD--FEVNVNDAR 761
Query: 573 FSALFTSPLFALDPTDPQFKRSAVYARQIAQKKQKGDQREQVIRES-----TKIPTNAQM 627
F A++TS LF LDP+DP FK++ + + +K ++ +++EQ + ++ ++I +Q
Sbjct: 762 FQAMYTSHLFNLDPSDPNFKKTKAMEKILEEKARQRERKEQELTQAIKKKESEIEKESQR 821
Query: 628 PSDDPDRHRHMKSDVSSLKRENHEVSLLVKSLKMKSKQIQ 667
S DP +S+L+KS+K K++Q Q
Sbjct: 822 KSIDP------------------ALSMLIKSIKTKTEQFQ 843
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 IITDSRFASVHSDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNLKT 84
I++D RF V DPRF +P++ KV ID RF MF DK F + A DKRG+P + +
Sbjct: 7 IMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYA-VDKRGRPISH--S 63
Query: 85 SKSSLQHYY 93
+ L+ +Y
Sbjct: 64 TTEDLKRFY 72
>sp|Q3V1V3|ESF1_MOUSE ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1
Length = 845
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 220/722 (30%), Positives = 351/722 (48%), Gaps = 149/722 (20%)
Query: 36 SDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNLKTSKSSLQHYYRI 95
+D + +PK K + DS M +SS A K K S+
Sbjct: 175 TDLSVEALPKGKLRTK-DSSTSEMVKSSTMSSSKA------------KREKQSVVPVIMA 221
Query: 96 EAEDKKSDEDEEIEEEERRNETDSESELKEAADVSSGSGTEEEDDDDV------------ 143
+ D K +++ +EE ++DS SEL G++EE +D++
Sbjct: 222 KDNDGKMPDEDALEE-----DSDSASEL----------GSDEESEDEIISDGKTSADEDE 266
Query: 144 ------------------------------------SESTTDDEEEDVD-------FDEG 160
E++++DE++ D F+
Sbjct: 267 SEEEDEEEEEDSEEEEEEEEEDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPGFEHA 326
Query: 161 PEEEEEAIPEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQ 220
E ++ P D T RLA+ NMDW +KA DLL + +SF PK G + SV +YPSEFG +
Sbjct: 327 WRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKE 386
Query: 221 RMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYL 280
RMKEE+V+GPV L D + D EKLR Y+ RL+YYYAV ECDS TA +
Sbjct: 387 RMKEEQVQGPVELLSIPE---DAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKI 443
Query: 281 YRACDGVEFERSSNKLDLRFIPDTMEFKYPPRDVATEAPANYGGLDFFTK-ALQHSNVQL 339
Y CDG+EFE S + +DLRFIPD + F P+DVA E +FT A+ S V++
Sbjct: 444 YEDCDGLEFESSCSFIDLRFIPDDITFDDEPKDVALEVDLTAYKPKYFTSAAMGTSTVEI 503
Query: 340 SWDDDEPDRVKTLKRKFNADQVAELELKEFLASDESETDDEDD--------NVADEQSDK 391
+WD+ + +R+ TL RKF D++ +++ + +LAS + ++ ++ N+ ++ K
Sbjct: 504 TWDETDHERITTLNRKFKKDELLDMDFQAYLASSSEDEEEVEEAPEGEEGVNIGEDGKTK 563
Query: 392 KSKKQD-----KYRALLESGDGSDEDGEEDGQDMEVTFNTGL----EDISKRILEKKDKK 442
KS+K D KYR LL+ ++ G+E+ +ME+ + GL E++ K LE KDK
Sbjct: 564 KSQKDDEEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKL 623
Query: 443 SETIWEAYLRKRREKKKAGKNKSKY----SSDDEASDTDREAIEEPDDFFVEEPKG---K 495
T WE +L K++EKK+ K + S D+ SD D D +F EE K K
Sbjct: 624 --TPWEQFLEKKKEKKRLKKKQKALAEEDSEDELPSDVDFN-----DPYFAEEVKKIGIK 676
Query: 496 KGEEAGGNHRREEKEQQDTDKEATASTAELELLLADDKGAENGLKGYNM----------K 545
K +E+ D +K+ AE+ LL+ D++ E+ K +N K
Sbjct: 677 KKSMKSAKDSASSEEETDLEKQ----KAEMALLVMDEE--EDSKKHFNYDKIVEHQNLSK 730
Query: 546 PKKRKGKKGKEVPDEDKIPTADYDDPRFSALFTSPLFALDPTDPQFKRSAVYARQIAQKK 605
KK++ K KE+ ++D + D RF A++TS LF LDP+DP FK++ + + +K
Sbjct: 731 KKKKQLMKKKELVEDDF--EVNVSDARFQAMYTSHLFNLDPSDPNFKKTKAMEKILEEKA 788
Query: 606 QKGDQREQVIRESTKIPTNAQMPSDDPDRHRHMKSDVSSLKRENHEVSLLVKSLKMKSKQ 665
+ +++E+++ ++ + AQ + P + + M + +S+L+KS+K K++Q
Sbjct: 789 RHRERKEELLIQAVE---RAQQDTGKPTQKQPM----------DPALSMLIKSVKNKTEQ 835
Query: 666 IQ 667
Q
Sbjct: 836 FQ 837
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 IITDSRFASVHSDPRFQNVPKQKSKVAIDSRFDRMFTDKNFASSTAPFDKRGKPKKNLKT 84
I+ D RF V DPRF +P+++ KV ID RF MF DK F + A DKRG+P + +
Sbjct: 7 IMDDQRFRRVSKDPRFWEMPEKERKVKIDKRFRAMFHDKKFKLNYA-VDKRGRPISH--S 63
Query: 85 SKSSLQHYY 93
+ L+ +Y
Sbjct: 64 TTEDLKRFY 72
>sp|Q756J5|ESF1_ASHGO Pre-rRNA-processing protein ESF1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ESF1
PE=3 SV=2
Length = 619
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 165/277 (59%), Gaps = 38/277 (13%)
Query: 178 LAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGP------- 230
LA+VN+DW HVK DLLV +SF+P+ G+I VA+YPSEFG +RM+ EEV GP
Sbjct: 153 LAVVNLDWDHVKCADLLVAFNSFVPEGGKIERVAIYPSEFGKERMQREEVEGPPREVFKS 212
Query: 231 -------------VGLFDSQNENSDDEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATA 277
+GL D + ++D D + LR Y+ RLRYYYAVV C++ ATA
Sbjct: 213 KKDKKAKQDDDDEIGLKDLYEQGDAEKD---YDSKALRRYQLERLRYYYAVVYCNNVATA 269
Query: 278 DYLYRACDGVEFERSSNKLDLRFIPDTMEFKYPPRDVATEAPANYGGLDFFTKALQHSNV 337
+ +Y+ CDG E+E ++N DLR++P+ + F PR+ P +Y + F T ALQHS V
Sbjct: 270 EAIYQNCDGTEYESTANMFDLRYVPEGVTFDDEPREECASVPKDYKPVQFSTSALQHSQV 329
Query: 338 QLSWDDDEPDRVKTLKRKFNADQVAELELKEFLASDESETDDEDDNVADEQSDKKSKKQD 397
+L+WD+ DRV+ KR F+ ++ +++ K +LASD SE + DDN S+ ++
Sbjct: 330 KLTWDETPADRVEMAKRAFSQKEIEDMDFKAYLASD-SEESEADDN---------SEAKN 379
Query: 398 KYRALLESGDGSD-----EDGEEDGQDMEVTFNTGLE 429
K R+L+ S +D ++ +E+ D+++TF GLE
Sbjct: 380 KLRSLVSSVKVADKPLFADESDEEEADVQITFTPGLE 416
>sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MDN1 PE=1 SV=1
Length = 4910
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 300 FIPDTMEFKYPPRDVATEA----PANYGGLDFFTKALQHSNVQLSWDDDEPDRVKTLKR 354
FIP+T E +P D A P YGG ++A ++ ++L +DD D ++ + R
Sbjct: 1174 FIPETQEVVHPHPDFLLFATQNPPGIYGGRKILSRAFRNRFLELHFDDIPQDELEIILR 1232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,711,959
Number of Sequences: 539616
Number of extensions: 13520025
Number of successful extensions: 153780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 2360
Number of HSP's that attempted gapping in prelim test: 72376
Number of HSP's gapped (non-prelim): 44392
length of query: 704
length of database: 191,569,459
effective HSP length: 125
effective length of query: 579
effective length of database: 124,117,459
effective search space: 71864008761
effective search space used: 71864008761
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.6 bits)