Query 005276
Match_columns 704
No_of_seqs 158 out of 265
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpd_A Apobec-1 stimulating pr 96.1 0.027 9.2E-07 47.9 9.2 73 173-300 13-85 (99)
2 2kvi_A Nuclear polyadenylated 96.0 0.019 6.6E-07 48.7 7.9 72 173-300 8-79 (96)
3 2ytc_A PRE-mRNA-splicing facto 96.0 0.034 1.2E-06 45.6 9.1 66 173-291 10-76 (85)
4 2xnq_A Nuclear polyadenylated 96.0 0.025 8.4E-07 48.5 8.3 64 173-290 20-83 (97)
5 2dgt_A RNA-binding protein 30; 95.8 0.03 1E-06 46.9 7.9 72 173-301 8-79 (92)
6 1why_A Hypothetical protein ri 95.7 0.041 1.4E-06 46.5 8.7 75 173-300 15-89 (97)
7 2cq2_A Hypothetical protein LO 95.7 0.023 7.8E-07 51.7 7.3 69 168-289 18-88 (114)
8 2dgu_A Heterogeneous nuclear r 95.7 0.031 1.1E-06 47.9 7.8 72 173-301 9-80 (103)
9 1x4g_A Nucleolysin TIAR; struc 95.7 0.037 1.3E-06 47.9 8.3 74 173-301 23-96 (109)
10 3zzy_A Polypyrimidine tract-bi 95.6 0.033 1.1E-06 51.8 8.2 77 174-301 27-103 (130)
11 2cq3_A RNA-binding protein 9; 95.5 0.073 2.5E-06 45.3 9.6 77 173-300 13-89 (103)
12 2hzc_A Splicing factor U2AF 65 95.5 0.026 8.9E-07 46.4 6.4 69 173-291 4-79 (87)
13 2ywk_A Putative RNA-binding pr 95.5 0.056 1.9E-06 45.2 8.5 71 172-290 13-83 (95)
14 2cpf_A RNA binding motif prote 95.5 0.044 1.5E-06 46.2 7.8 82 173-300 3-84 (98)
15 2e5i_A Heterogeneous nuclear r 95.4 0.044 1.5E-06 50.3 8.3 76 174-301 24-99 (124)
16 2d9p_A Polyadenylate-binding p 95.4 0.08 2.7E-06 45.1 9.2 78 173-301 13-90 (103)
17 1x4c_A Splicing factor, argini 95.3 0.084 2.9E-06 45.8 9.4 65 173-291 13-77 (108)
18 3ulh_A THO complex subunit 4; 95.3 0.088 3E-06 45.1 9.4 79 173-301 27-105 (107)
19 2cqc_A Arginine/serine-rich sp 95.3 0.057 2E-06 45.0 7.9 71 173-290 13-83 (95)
20 1wex_A Hypothetical protein (r 95.3 0.08 2.7E-06 46.6 9.2 76 173-301 13-88 (104)
21 2fy1_A RNA-binding motif prote 95.3 0.048 1.6E-06 48.3 7.8 78 173-300 5-82 (116)
22 2dnp_A RNA-binding protein 14; 95.3 0.05 1.7E-06 45.3 7.5 71 173-300 7-77 (90)
23 2dnq_A RNA-binding protein 4B; 95.1 0.091 3.1E-06 43.8 8.7 71 173-300 6-76 (90)
24 3beg_B Splicing factor, argini 95.1 0.068 2.3E-06 47.1 8.2 65 173-291 14-78 (115)
25 2cpj_A Non-POU domain-containi 95.0 0.052 1.8E-06 46.1 7.0 74 173-301 13-86 (99)
26 1sjr_A Polypyrimidine tract-bi 94.9 0.069 2.3E-06 51.6 8.3 82 174-306 45-127 (164)
27 2dgv_A HnRNP M, heterogeneous 94.9 0.16 5.4E-06 42.1 9.6 78 172-300 5-82 (92)
28 2do0_A HnRNP M, heterogeneous 94.9 0.081 2.8E-06 45.8 8.0 78 173-300 13-90 (114)
29 2jrs_A RNA-binding protein 39; 94.9 0.096 3.3E-06 45.8 8.5 86 166-300 17-102 (108)
30 2dnm_A SRP46 splicing factor; 94.9 0.064 2.2E-06 45.7 7.2 79 173-300 11-89 (103)
31 1p27_B RNA-binding protein 8A; 94.8 0.16 5.3E-06 43.4 9.5 78 173-299 21-98 (106)
32 3lqv_A PRE-mRNA branch site pr 94.8 0.11 3.7E-06 45.1 8.6 68 173-290 6-73 (115)
33 3tht_A Alkylated DNA repair pr 94.8 0.068 2.3E-06 57.1 8.5 83 166-301 9-96 (345)
34 1x4a_A Splicing factor, argini 94.7 0.11 3.7E-06 44.8 8.4 76 173-300 20-95 (109)
35 1whw_A Hypothetical protein ri 94.7 0.12 4.2E-06 43.5 8.5 79 173-300 6-84 (99)
36 2cq0_A Eukaryotic translation 94.7 0.092 3.2E-06 44.7 7.8 79 173-300 13-91 (103)
37 1wf1_A RNA-binding protein RAL 94.7 0.056 1.9E-06 46.8 6.4 72 174-301 26-97 (110)
38 2cq1_A PTB-like protein L; RRM 94.7 0.094 3.2E-06 46.0 7.8 75 173-300 13-87 (101)
39 2x1f_A MRNA 3'-END-processing 94.6 0.11 3.8E-06 43.7 8.0 78 174-300 1-78 (96)
40 2cqi_A Nucleolysin TIAR; RNA r 94.6 0.14 4.7E-06 43.6 8.6 78 173-301 13-90 (103)
41 2cph_A RNA binding motif prote 94.5 0.16 5.6E-06 43.2 8.8 81 173-301 13-94 (107)
42 2jvo_A Nucleolar protein 3; nu 94.5 0.1 3.4E-06 45.7 7.5 63 173-290 29-91 (108)
43 3bs9_A Nucleolysin TIA-1 isofo 94.4 0.18 6.3E-06 41.2 8.7 71 174-291 5-75 (87)
44 3r27_A HnRNP L, heterogeneous 94.4 0.13 4.4E-06 45.7 8.2 65 173-290 19-83 (100)
45 2ad9_A Polypyrimidine tract-bi 94.4 0.11 3.7E-06 47.4 7.9 73 173-298 29-101 (119)
46 2dnz_A Probable RNA-binding pr 94.4 0.2 6.7E-06 41.8 9.0 80 173-301 3-82 (95)
47 1x5u_A Splicing factor 3B subu 94.4 0.14 4.9E-06 43.6 8.3 79 173-300 13-91 (105)
48 2la4_A Nuclear and cytoplasmic 94.3 0.11 3.9E-06 44.0 7.5 64 174-290 26-89 (101)
49 2kxn_B Transformer-2 protein h 94.2 0.16 5.5E-06 45.9 8.7 79 173-300 44-122 (129)
50 2cqb_A Peptidyl-prolyl CIS-tra 94.2 0.064 2.2E-06 45.5 5.7 79 173-300 10-88 (102)
51 1whx_A Hypothetical protein ri 94.2 0.11 3.6E-06 45.7 7.2 77 174-305 9-85 (111)
52 1nu4_A U1A RNA binding domain; 94.2 0.17 5.8E-06 42.4 8.2 76 173-300 6-85 (97)
53 2do4_A Squamous cell carcinoma 94.2 0.24 8.2E-06 41.9 9.2 78 173-300 15-92 (100)
54 2dgo_A Cytotoxic granule-assoc 94.2 0.26 8.9E-06 42.7 9.6 80 173-301 13-92 (115)
55 1x4e_A RNA binding motif, sing 94.2 0.098 3.4E-06 42.9 6.5 71 173-290 3-73 (85)
56 1h2v_Z 20 kDa nuclear CAP bind 94.1 0.24 8.2E-06 45.5 9.7 80 173-301 37-116 (156)
57 2cpz_A CUG triplet repeat RNA- 94.0 0.2 6.8E-06 43.6 8.5 79 173-300 23-101 (115)
58 1x4f_A Matrin 3; structural ge 93.9 0.094 3.2E-06 47.4 6.3 65 173-289 23-87 (112)
59 2adc_A Polypyrimidine tract-bi 93.9 0.16 5.5E-06 49.5 8.5 75 173-300 149-224 (229)
60 2i2y_A Fusion protein consists 93.8 0.25 8.6E-06 45.0 9.1 74 173-300 71-144 (150)
61 1rk8_A CG8781-PA, CG8781-PA pr 93.8 0.25 8.4E-06 46.1 9.2 72 173-291 70-141 (165)
62 1x5s_A Cold-inducible RNA-bind 93.8 0.15 5E-06 43.3 7.0 72 173-291 10-81 (102)
63 1qm9_A Polypyrimidine tract-bi 93.7 0.12 4.2E-06 48.4 7.1 75 173-300 118-193 (198)
64 3md1_A Nuclear and cytoplasmic 93.7 0.32 1.1E-05 39.4 8.6 76 175-299 1-76 (83)
65 2dnh_A Bruno-like 5, RNA bindi 93.6 0.23 7.9E-06 42.2 7.9 80 173-300 13-93 (105)
66 1x4d_A Matrin 3; structural ge 93.5 0.13 4.6E-06 45.4 6.4 72 173-296 13-84 (102)
67 2khc_A Testis-specific RNP-typ 93.4 0.2 7E-06 43.6 7.5 72 173-291 38-109 (118)
68 1x4h_A RNA-binding protein 28; 93.4 0.28 9.7E-06 42.0 8.3 79 173-300 13-97 (111)
69 2e5h_A Zinc finger CCHC-type a 93.4 0.27 9.3E-06 40.8 7.9 71 173-290 14-84 (94)
70 3mdf_A Peptidyl-prolyl CIS-tra 93.3 0.22 7.5E-06 40.5 7.1 71 173-290 5-75 (85)
71 2dhg_A TRNA selenocysteine ass 93.2 0.45 1.5E-05 40.4 9.2 71 173-291 7-79 (104)
72 1x5t_A Splicing factor 3B subu 93.2 0.17 6E-06 42.2 6.5 78 174-300 4-82 (96)
73 2hvz_A Splicing factor, argini 93.2 0.14 4.8E-06 43.4 6.0 72 176-301 1-72 (101)
74 3ex7_B RNA-binding protein 8A; 93.2 0.31 1.1E-05 42.9 8.4 78 173-299 20-97 (126)
75 1p1t_A Cleavage stimulation fa 93.2 0.14 4.7E-06 43.5 5.9 72 172-290 5-76 (104)
76 2div_A TRNA selenocysteine ass 93.2 0.27 9.3E-06 41.3 7.7 73 173-292 7-80 (99)
77 1oo0_B CG8781-PA, drosophila Y 93.1 0.35 1.2E-05 41.5 8.4 71 173-290 24-94 (110)
78 1x5o_A RNA binding motif, sing 93.0 0.49 1.7E-05 40.9 9.2 71 173-291 23-93 (114)
79 3pgw_S U1-70K; protein-RNA com 92.9 0.2 6.7E-06 54.7 8.0 76 173-295 100-175 (437)
80 3tyt_A Heterogeneous nuclear r 92.9 0.24 8.3E-06 48.2 7.9 68 174-292 3-70 (205)
81 2adc_A Polypyrimidine tract-bi 92.8 0.26 8.8E-06 48.0 8.0 76 173-301 32-107 (229)
82 1fxl_A Paraneoplastic encephal 92.8 0.53 1.8E-05 42.1 9.5 80 174-300 87-166 (167)
83 2cqd_A RNA-binding region cont 92.8 0.4 1.4E-05 41.6 8.5 78 173-300 15-92 (116)
84 1sjq_A Polypyrimidine tract-bi 92.8 0.4 1.4E-05 42.9 8.5 65 173-290 14-80 (105)
85 3pgw_A U1-A; protein-RNA compl 92.8 0.27 9.2E-06 48.8 8.2 73 173-298 205-277 (282)
86 2dgx_A KIAA0430 protein; RRM d 92.7 0.27 9.3E-06 41.6 7.1 74 174-299 8-85 (96)
87 2e5g_A U6 snRNA-specific termi 92.7 0.34 1.2E-05 40.7 7.6 67 173-292 6-72 (94)
88 4f25_A Polyadenylate-binding p 92.7 0.25 8.6E-06 43.4 7.0 68 175-291 5-72 (115)
89 2dgp_A Bruno-like 4, RNA bindi 92.7 0.3 1E-05 41.6 7.4 81 173-300 11-92 (106)
90 2nlw_A Eukaryotic translation 92.6 0.24 8.2E-06 42.7 6.7 79 172-301 12-97 (105)
91 3s8s_A Histone-lysine N-methyl 92.6 0.33 1.1E-05 42.8 7.6 80 173-301 4-83 (110)
92 2j76_E EIF-4B, EIF4B, eukaryot 92.5 0.22 7.4E-06 42.6 6.2 71 173-291 17-87 (100)
93 2dng_A Eukaryotic translation 92.4 0.49 1.7E-05 40.2 8.4 77 173-300 13-89 (103)
94 2la6_A RNA-binding protein FUS 92.4 0.69 2.3E-05 39.0 9.2 71 173-290 11-89 (99)
95 4a8x_A RNA-binding protein wit 92.4 0.4 1.4E-05 39.1 7.5 72 174-291 3-74 (88)
96 2err_A Ataxin-2-binding protei 92.3 0.27 9.2E-06 42.8 6.7 69 173-290 27-95 (109)
97 2dgs_A DAZ-associated protein 92.3 0.71 2.4E-05 38.8 9.1 78 173-300 8-85 (99)
98 4fxv_A ELAV-like protein 1; RN 92.2 0.53 1.8E-05 40.5 8.3 70 175-291 19-88 (99)
99 2kt5_A RNA and export factor-b 92.2 0.4 1.4E-05 42.3 7.7 81 173-303 33-113 (124)
100 1u6f_A Tcubp1, RNA-binding pro 92.2 0.44 1.5E-05 42.6 8.1 79 173-300 40-118 (139)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.0 0.59 2E-05 41.5 8.7 71 173-290 61-131 (140)
102 2lea_A Serine/arginine-rich sp 91.9 0.25 8.4E-06 45.0 6.1 79 173-300 45-123 (135)
103 2dh8_A DAZ-associated protein 91.7 0.44 1.5E-05 40.6 7.2 71 173-291 14-84 (105)
104 2jwn_A Embryonic polyadenylate 91.6 0.45 1.5E-05 41.7 7.3 77 174-300 35-111 (124)
105 1wi8_A EIF-4B, eukaryotic tran 91.5 0.5 1.7E-05 40.2 7.3 78 173-300 13-90 (104)
106 1b7f_A Protein (SXL-lethal pro 91.2 0.83 2.8E-05 41.0 8.9 79 174-301 2-80 (168)
107 1b7f_A Protein (SXL-lethal pro 91.1 1 3.5E-05 40.4 9.4 80 173-299 87-166 (168)
108 1x5p_A Negative elongation fac 91.0 0.69 2.4E-05 38.9 7.7 71 173-300 13-83 (97)
109 3ucg_A Polyadenylate-binding p 91.0 0.71 2.4E-05 37.8 7.6 70 174-291 5-74 (89)
110 2cpx_A Hypothetical protein FL 90.9 0.71 2.4E-05 39.8 7.8 79 173-300 23-101 (115)
111 2jvr_A Nucleolar protein 3; RN 90.9 0.34 1.2E-05 43.3 5.8 68 174-292 27-95 (111)
112 2cqh_A IGF-II mRNA-binding pro 90.8 0.41 1.4E-05 39.9 6.0 73 173-300 6-79 (93)
113 2cq4_A RNA binding motif prote 90.7 0.37 1.3E-05 41.7 5.9 71 173-291 23-93 (114)
114 2g4b_A Splicing factor U2AF 65 90.7 0.45 1.5E-05 43.1 6.6 67 174-290 3-76 (172)
115 3md3_A Nuclear and cytoplasmic 90.7 1.2 4E-05 39.8 9.2 71 173-290 85-155 (166)
116 1qm9_A Polypyrimidine tract-bi 90.6 0.29 9.9E-06 45.9 5.4 74 175-301 3-76 (198)
117 3nmr_A Cugbp ELAV-like family 90.5 1.1 3.7E-05 40.5 8.9 80 173-300 93-173 (175)
118 2dit_A HIV TAT specific factor 90.5 1.2 4.1E-05 38.8 8.9 82 173-307 13-105 (112)
119 2a3j_A U1 small nuclear ribonu 90.2 1.1 3.7E-05 40.9 8.7 69 173-291 27-99 (127)
120 2qfj_A FBP-interacting repress 90.1 1.2 4.3E-05 41.7 9.4 79 173-300 123-201 (216)
121 2dis_A Unnamed protein product 90.1 0.73 2.5E-05 39.3 7.1 80 173-300 6-88 (109)
122 1wg1_A KIAA1579 protein, homol 90.1 0.8 2.7E-05 37.9 7.1 78 174-307 4-81 (88)
123 2yh0_A Splicing factor U2AF 65 89.9 0.37 1.3E-05 44.7 5.4 76 173-300 2-84 (198)
124 2cpe_A RNA-binding protein EWS 89.8 0.68 2.3E-05 39.9 6.7 79 173-300 13-99 (113)
125 2dgw_A Probable RNA-binding pr 89.7 0.7 2.4E-05 38.3 6.5 69 173-291 8-76 (91)
126 2fc9_A NCL protein; structure 89.4 0.53 1.8E-05 39.8 5.5 75 173-300 13-87 (101)
127 2g4b_A Splicing factor U2AF 65 89.3 0.98 3.4E-05 40.8 7.7 70 174-290 93-162 (172)
128 2cqg_A TDP-43, TAR DNA-binding 89.0 2.1 7.1E-05 36.2 9.1 79 172-301 12-90 (103)
129 1fxl_A Paraneoplastic encephal 88.9 1.7 5.7E-05 38.8 8.8 79 174-301 1-79 (167)
130 1s79_A Lupus LA protein; RRM, 88.9 1 3.6E-05 39.1 7.3 69 174-291 10-78 (103)
131 2qfj_A FBP-interacting repress 88.7 1.2 4E-05 41.9 8.0 72 173-291 26-97 (216)
132 1wf0_A TDP-43, TAR DNA-binding 88.6 0.59 2E-05 38.6 5.3 72 173-300 3-74 (88)
133 3nmr_A Cugbp ELAV-like family 88.6 0.89 3.1E-05 41.0 6.9 71 174-289 2-72 (175)
134 2yh0_A Splicing factor U2AF 65 88.5 1.2 4E-05 41.3 7.8 79 173-300 112-190 (198)
135 3pgw_A U1-A; protein-RNA compl 88.4 1.4 4.9E-05 43.5 8.8 77 173-301 7-87 (282)
136 2wbr_A GW182, gawky, LD47780P; 88.0 1.9 6.3E-05 37.9 8.2 70 173-295 5-74 (89)
137 3tyt_A Heterogeneous nuclear r 88.0 0.9 3.1E-05 44.1 6.9 73 173-294 121-195 (205)
138 3smz_A Protein raver-1, ribonu 87.9 1.1 3.7E-05 44.5 7.5 80 173-301 182-261 (284)
139 2f3j_A RNA and export factor b 87.8 1.2 4.1E-05 42.4 7.5 81 173-303 86-166 (177)
140 2ghp_A U4/U6 snRNA-associated 87.7 1.1 3.9E-05 44.5 7.6 80 173-300 208-287 (292)
141 2cpi_A CCR4-NOT transcription 87.6 0.96 3.3E-05 39.3 6.2 81 174-300 14-97 (111)
142 4f02_A Polyadenylate-binding p 87.6 1.3 4.6E-05 42.4 7.8 69 174-291 102-170 (213)
143 2xs2_A Deleted in azoospermia- 87.3 0.53 1.8E-05 39.8 4.3 63 172-282 6-68 (102)
144 2krb_A Eukaryotic translation 87.1 1.3 4.5E-05 35.9 6.4 69 175-291 1-74 (81)
145 3sde_A Paraspeckle component 1 87.0 1.2 4E-05 44.3 7.2 74 173-301 20-93 (261)
146 2bz2_A Negative elongation fac 87.0 1.3 4.6E-05 39.5 6.9 71 173-300 37-107 (121)
147 3md3_A Nuclear and cytoplasmic 87.0 2.1 7E-05 38.1 8.1 76 176-301 1-76 (166)
148 2e5j_A Methenyltetrahydrofolat 86.7 1.3 4.5E-05 37.2 6.4 67 173-291 17-83 (97)
149 2cqp_A RNA-binding protein 12; 86.6 0.89 3.1E-05 38.0 5.2 79 173-300 13-91 (98)
150 3n9u_C Cleavage and polyadenyl 86.3 2.6 8.8E-05 39.4 8.7 77 174-299 54-132 (156)
151 3s7r_A Heterogeneous nuclear r 86.1 3.8 0.00013 33.4 8.7 69 173-289 9-77 (87)
152 2cpy_A RNA-binding protein 12; 86.1 0.8 2.7E-05 40.0 4.8 70 173-291 13-83 (114)
153 2e44_A Insulin-like growth fac 86.0 4.6 0.00016 33.5 9.4 78 173-303 13-91 (96)
154 3u1l_A PRE-mRNA-splicing facto 85.8 1.8 6.2E-05 44.0 7.9 65 173-289 132-204 (240)
155 2ki2_A SS-DNA binding protein 85.6 0.9 3.1E-05 37.4 4.7 75 176-300 2-76 (90)
156 2lmi_A GRSF-1, G-rich sequence 85.4 1.2 4E-05 38.5 5.5 72 173-290 9-80 (107)
157 1l3k_A Heterogeneous nuclear r 85.4 3.6 0.00012 37.8 9.2 70 173-290 11-80 (196)
158 3egn_A RNA-binding protein 40; 84.9 2.6 9E-05 37.9 7.8 79 173-299 43-125 (143)
159 2ghp_A U4/U6 snRNA-associated 84.8 2.2 7.4E-05 42.4 7.9 70 172-291 38-107 (292)
160 3q2s_C Cleavage and polyadenyl 84.5 2.5 8.5E-05 41.9 8.1 72 174-292 67-140 (229)
161 2mss_A Protein (musashi1); RNA 84.4 1.6 5.6E-05 34.6 5.6 66 177-290 1-66 (75)
162 2db1_A Heterogeneous nuclear r 83.5 1.3 4.3E-05 39.2 5.0 73 173-291 15-87 (118)
163 1x4b_A Heterogeneous nuclear r 83.4 2.4 8.4E-05 36.6 6.7 71 173-291 25-95 (116)
164 2dnl_A Cytoplasmic polyadenyla 83.4 2.5 8.5E-05 36.8 6.8 74 173-291 6-82 (114)
165 1fjc_A Nucleolin RBD2, protein 83.3 1.8 6.1E-05 36.0 5.6 74 173-300 14-87 (96)
166 2kn4_A Immunoglobulin G-bindin 83.3 3.5 0.00012 37.4 8.0 79 173-300 68-146 (158)
167 3smz_A Protein raver-1, ribonu 83.1 2.4 8.2E-05 41.9 7.4 72 173-300 20-91 (284)
168 2fc8_A NCL protein; structure 83.0 3.7 0.00013 34.4 7.5 76 173-300 13-88 (102)
169 1l3k_A Heterogeneous nuclear r 82.9 4.9 0.00017 37.0 8.9 78 173-300 102-179 (196)
170 1fje_B Nucleolin RBD12, protei 82.8 2 6.8E-05 39.1 6.1 75 173-301 97-171 (175)
171 2cjk_A Nuclear polyadenylated 82.6 3.4 0.00012 37.0 7.5 119 174-300 2-162 (167)
172 3ns6_A Eukaryotic translation 82.2 1.6 5.4E-05 37.2 4.9 72 174-291 5-81 (100)
173 3d2w_A TAR DNA-binding protein 81.9 3.4 0.00012 34.6 6.8 70 173-298 9-78 (89)
174 2rs2_A Musashi-1, RNA-binding 81.5 4.3 0.00015 35.1 7.5 77 173-299 23-99 (109)
175 4f02_A Polyadenylate-binding p 81.3 4.7 0.00016 38.6 8.4 72 173-291 13-84 (213)
176 1wg5_A Heterogeneous nuclear r 80.8 2.9 0.0001 35.7 6.1 70 173-291 13-83 (104)
177 2lcw_A RNA-binding protein FUS 81.8 0.32 1.1E-05 42.4 0.0 79 173-300 5-91 (116)
178 2dha_A FLJ20171 protein; RRM d 80.1 1.6 5.4E-05 39.6 4.4 73 173-290 21-93 (123)
179 2ek1_A RNA-binding protein 12; 79.1 2.2 7.6E-05 35.3 4.7 71 174-291 14-84 (95)
180 3p5t_L Cleavage and polyadenyl 77.4 4.9 0.00017 33.2 6.3 68 177-291 3-72 (90)
181 3sde_A Paraspeckle component 1 76.0 3.7 0.00013 40.6 6.1 69 174-290 95-163 (261)
182 2m2b_A RNA-binding protein 10; 75.9 2.7 9.1E-05 37.5 4.5 79 172-300 20-104 (131)
183 1uaw_A Mouse-musashi-1; RNP-ty 75.8 4.6 0.00016 31.9 5.5 66 176-289 1-66 (77)
184 3v4m_A Splicing factor U2AF 65 74.6 9.6 0.00033 33.2 7.7 85 172-302 2-95 (105)
185 2dnn_A RNA-binding protein 12; 73.3 4.4 0.00015 35.8 5.2 68 174-291 15-82 (109)
186 2pe8_A Splicing factor 45; RRM 71.9 15 0.0005 32.1 8.2 82 173-301 6-91 (105)
187 1wel_A RNA-binding protein 12; 70.8 2.6 9E-05 37.1 3.2 71 173-291 23-93 (124)
188 1iqt_A AUF1, heterogeneous nuc 69.2 3.9 0.00013 32.2 3.6 66 177-290 1-66 (75)
189 2hgl_A HNRPF protein, heteroge 68.6 4.5 0.00015 37.2 4.3 73 173-291 42-114 (136)
190 2lxi_A RNA-binding protein 10; 65.7 6.4 0.00022 33.0 4.4 70 175-290 1-71 (91)
191 2voo_A Lupus LA protein; RNA-b 62.4 13 0.00044 35.7 6.5 64 174-285 108-171 (193)
192 1wez_A HnRNP H', FTP-3, hetero 59.9 9.1 0.00031 32.8 4.4 69 173-291 13-81 (102)
193 3ue2_A Poly(U)-binding-splicin 58.9 22 0.00074 31.9 6.8 86 174-303 19-108 (118)
194 2hgm_A HNRPF protein, heteroge 55.2 16 0.00056 33.1 5.5 68 174-290 41-109 (126)
195 2d9o_A DNAJ (HSP40) homolog, s 53.2 35 0.0012 29.6 7.1 59 187-300 28-86 (100)
196 2hgn_A Heterogeneous nuclear r 51.3 8.9 0.0003 35.4 3.1 68 174-291 45-112 (139)
197 1jmt_A Splicing factor U2AF 35 48.6 13 0.00044 32.2 3.5 36 265-302 69-104 (104)
198 1fje_B Nucleolin RBD12, protei 47.3 22 0.00074 32.1 5.0 77 173-301 11-88 (175)
199 1fj7_A Nucleolin RBD1, protein 43.7 19 0.00065 30.0 3.7 77 173-300 15-91 (101)
200 2l9w_A U4/U6 snRNA-associated- 39.4 17 0.0006 33.4 2.9 25 266-290 64-88 (117)
201 2diu_A KIAA0430 protein; struc 31.7 32 0.0011 30.5 3.3 70 174-296 7-78 (96)
202 2lkz_A RNA-binding protein 5; 24.7 31 0.0011 29.4 1.9 71 173-288 7-77 (95)
203 1uth_A LYSR-type regulatory pr 22.5 18 0.00062 35.6 0.0 25 254-278 11-35 (315)
204 2cjk_A Nuclear polyadenylated 21.8 52 0.0018 29.1 2.9 37 174-215 86-122 (167)
No 1
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.027 Score=47.87 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.|-| |.|.+|.|- .
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~--g~v~~~~~~-----------------~--------------------- 51 (99)
T 2cpd_A 13 SSVKILYVRNLMLS-TSEEMIEKEFNNIKP--GAVERVKKI-----------------R--------------------- 51 (99)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHHTTST--TCEEEEEEC-----------------S---------------------
T ss_pred CCcCEEEEeCCCCC-CCHHHHHHHHHhcCC--cceEEEEEe-----------------C---------------------
Confidence 47899999999997 999999999999987 899998752 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 52 ------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 85 (99)
T 2cpd_A 52 ------------DYAFVHFSNREDAVEAMKALNGKVLD--GSPIEVTL 85 (99)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHSSEEET--TEEEEEEC
T ss_pred ------------CeEEEEeCCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 08999999999999999999999886 34444443
No 2
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.019 Score=48.69 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|=|.||.|.++...||..+|+.| |.|.+|.|- .
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~-----------------~--------------------- 45 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK-----------------N--------------------- 45 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE-----------------T---------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe-----------------C---------------------
Confidence 4789999999999899999999999988 789998881 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 46 ------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 79 (96)
T 2kvi_A 46 ------------AFGFIQFDNPQSVRDAIECESQEMNF--GKKLILEV 79 (96)
T ss_dssp ------------TEEEEEESCHHHHHHHHHHHTCSSCB--TTTBCEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEE
Confidence 18999999999999999999999886 44444444
No 3
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.01 E-value=0.034 Score=45.60 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|.++ .
T Consensus 10 ~~~~~l~V~~l~~~-~t~~~l~~~f~~~----G~i~~~~~~~~------------k------------------------ 48 (85)
T 2ytc_A 10 KTITTLYVGGLGDT-ITETDLRNHFYQF----GEIRTITVVQR------------Q------------------------ 48 (85)
T ss_dssp SSCCCEEEECCTTT-SCHHHHHHHHHTT----SCEEEEEEEGG------------G------------------------
T ss_pred CCccEEEEcCCCCC-CCHHHHHHHHHhC----CCEeEEEEECC------------C------------------------
Confidence 57899999999996 9999999999977 77999999852 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhc-Ccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ec-DG~E~E~ 291 (704)
=||.|+|.+.+.|......+ +|..+.-
T Consensus 49 ------------g~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 49 ------------QCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp ------------TEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 18999999999999999999 9988763
No 4
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.96 E-value=0.025 Score=48.54 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|.++.-.||..+|+.| |.|.+|.| +.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i-----------------~~--------------------- 57 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINI-----------------KN--------------------- 57 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEE-----------------CS---------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEE-----------------eC---------------------
Confidence 4789999999999999999999999998 78999998 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
-||.|+|.+.+.|......++|..+.
T Consensus 58 ------------g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 58 ------------AFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 28999999999999999999998875
No 5
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.03 Score=46.95 Aligned_cols=72 Identities=17% Similarity=0.352 Sum_probs=60.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 8 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~v~~~-----------------~--------------~------ 45 (92)
T 2dgt_A 8 KASTKLHVGNISPT-CTNQELRAKFEEY----GPVIECDIV-----------------K--------------D------ 45 (92)
T ss_dssp CSSEEEEEESCCSS-CCHHHHHHHHHTT----SCCCEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEE-----------------C--------------C------
Confidence 47899999999997 7999999999987 678888874 1 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 46 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 79 (92)
T 2dgt_A 46 -------------YAFVHMERAEDAVEAIRGLDNTEFQ--GKRMHVQLS 79 (92)
T ss_dssp -------------EEEEEESCHHHHHHHHHHHTTEEET--TEEEEEEES
T ss_pred -------------EEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEc
Confidence 8999999999999999999999886 455555543
No 6
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.73 E-value=0.041 Score=46.54 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=60.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|.+. .
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~~~~~---------------~--------------------- 53 (97)
T 1why_A 15 NPTTRLWVGGLGPN-TSLAALAREFDRF----GSIRTIDHVKG---------------D--------------------- 53 (97)
T ss_dssp CCCSCEEEECCCSS-CCHHHHHHHHHTT----SCEEEEEECSS---------------S---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEeCC---------------C---------------------
Confidence 47899999999997 9999999999977 68999877521 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..+.-....|-++|
T Consensus 54 ------------g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 54 ------------SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp ------------CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 189999999999999999999998864345555444
No 7
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.023 Score=51.69 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=57.6
Q ss_pred CCCCCCCCceeEEec--cCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCC
Q 005276 168 IPEIDNETHRLAIVN--MDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (704)
Q Consensus 168 ~p~~~~~T~RLAvvN--mDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~ 245 (704)
+.....+|++|-|+| |.|+ +.-.+|--+|+.| |.|.+|.|.++
T Consensus 18 ~~~~~~pt~~L~V~Ng~L~~~-~te~~L~~~F~~f----G~v~~v~i~~~------------------------------ 62 (114)
T 2cq2_A 18 IETVSYATQSLVVANGGLGNG-VSRNQLLPVLEKC----GLVDALLMPPN------------------------------ 62 (114)
T ss_dssp CCCCSSCCSEEEEETCTGGGT-CCHHHHHHHHHHH----SCEEEEECCTT------------------------------
T ss_pred CcCCCCCCCEEEEECCCCCCC-CCHHHHHHHHHhc----CCeEEEEEeCC------------------------------
Confidence 444456899999966 9995 7889999999988 68999877431
Q ss_pred ChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 246 ~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
| =||.|+|.+.+.|...+++++|.++
T Consensus 63 ---------------r---gfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 63 ---------------K---PYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp ---------------C---SCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred ---------------C---CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 0 1899999999999999999999998
No 8
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.67 E-value=0.031 Score=47.88 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 9 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~v~~~-----------------~--------------~------ 46 (103)
T 2dgu_A 9 AKVKVLFVRNLANT-VTEEILEKAFSQF----GKLERVKKL-----------------K--------------D------ 46 (103)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHH----SCEEEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEE-----------------C--------------C------
Confidence 46799999999996 9999999999988 679888863 0 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
||.|+|.+.+.|......++|..+. ...|-++|-
T Consensus 47 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 80 (103)
T 2dgu_A 47 -------------YAFIHFDERDGAVKAMEEMNGKDLE--GENIEIVFA 80 (103)
T ss_dssp -------------CEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred -------------EEEEEeCCHHHHHHHHHHHCCCccC--CCEEEEEEc
Confidence 8999999999999999999999876 455555554
No 9
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.65 E-value=0.037 Score=47.90 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.| ++...||..+|+.| |.|.+|.|.+.
T Consensus 23 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~----G~i~~v~i~~~------------------------------------- 60 (109)
T 1x4g_A 23 PKNCTVYCGGIAS-GLTDQLMRQTFSPF----GQIMEIRVFPE------------------------------------- 60 (109)
T ss_dssp SSCCEEEEECCSS-CCCHHHHHHHHHHH----SCEEEEEEETT-------------------------------------
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEeCC-------------------------------------
Confidence 3678999999999 68999999999987 68999998753
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 61 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 96 (109)
T 1x4g_A 61 -----------KGYSFVRFSTHESAAHAIVSVNGTTIE--GHVVKCYWG 96 (109)
T ss_dssp -----------TTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEECC
T ss_pred -----------CCEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEec
Confidence 028999999999999999999998876 455555554
No 10
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.61 E-value=0.033 Score=51.81 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.--||-|-||.|. |.-.+|+.+|+-| |.|.+|.|+.-
T Consensus 27 ~VL~I~V~NL~~~-vte~~L~~lFs~y----G~V~~V~i~~~-------------------------------------- 63 (130)
T 3zzy_A 27 PVLRIIVENLFYP-VTLDVLHQIFSKF----GTVLKIITFTK-------------------------------------- 63 (130)
T ss_dssp SEEEEEEESCCSC-CCHHHHHHHHTTS----SCEEEEEEEEE--------------------------------------
T ss_pred ceEEEEECCCCCC-CCHHHHHHHHhCc----CCEEEEEEEcC--------------------------------------
Confidence 4456669999986 9999999999977 89999999741
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.|=|+|.|++.+++.|..-.+.+||.++.-.++.|.+-|-
T Consensus 64 --------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 64 --------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp --------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred --------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 0237799999999999999999999999886667777665
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.53 E-value=0.073 Score=45.35 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=61.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|.... .++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~-----------~~~---------------------- 54 (103)
T 2cq3_A 13 STPKRLHVSNIPFR-FRDPDLRQMFGQF----GKILDVEIIFNE-----------RGS---------------------- 54 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHGGGT----SCEEEEEEECCT-----------TTT----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecC-----------CCC----------------------
Confidence 46899999999996 9999999999987 789999997532 011
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
--||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 55 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 89 (103)
T 2cq3_A 55 -----------KGFGFVTFENSADADRAREKLHGTVVEG--RKIEVNN 89 (103)
T ss_dssp -----------CCEEEEEESCHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred -----------cEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 1389999999999999999999998753 4444443
No 12
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.49 E-value=0.026 Score=46.37 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=57.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccC-------CCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLP-------KDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P-------~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~ 245 (704)
..+++|=|.||.| ++...||..+|+.|.. +++.|.+|.|..+
T Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------------------------------ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------------------------ 52 (87)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------------------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------------------------------
Confidence 3689999999999 5799999999999843 3348999988632
Q ss_pred ChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 246 ~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
-=||.|+|.+.+.|.... .++|..+.-
T Consensus 53 ------------------kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 53 ------------------KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp ------------------SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred ------------------CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 028999999999999999 999998753
No 13
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=95.48 E-value=0.056 Score=45.20 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=59.3
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...+++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- |.
T Consensus 13 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~--------------------- 55 (95)
T 2ywk_A 13 EEADRTVFVGNLEAR-VREEILYELFLQA----GPLTKVTICKDRE-----------GK--------------------- 55 (95)
T ss_dssp TTGGGEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT-----------SC---------------------
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCC-----------CC---------------------
Confidence 357899999999996 8999999999988 7899999875310 11
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.--||.|+|.+.+.|......++|..+.
T Consensus 56 -----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 56 -----------PKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp -----------EEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred -----------CceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 1348999999999999999999999876
No 14
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.46 E-value=0.044 Score=46.20 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- ..|
T Consensus 3 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~---------~~g----------------------- 45 (98)
T 2cpf_A 3 SGSSGLFIKNLNFS-TTEETLKGVFSKV----GAIKSCTISKKKN---------KAG----------------------- 45 (98)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEEEEC---------TTC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC---------CCC-----------------------
Confidence 47899999999998 9999999999987 6899998864221 000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
....--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 46 -------t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 84 (98)
T 2cpf_A 46 -------VLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKLEVRI 84 (98)
T ss_dssp -------CEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TEECEEEC
T ss_pred -------CcCcccEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEE
Confidence 0012358999999999999999999999876 44555544
No 15
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.43 E-value=0.044 Score=50.28 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=61.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+-+|-|-||.|. |.-.+|+.+|+-| |.|.+|.|+.- .|
T Consensus 24 ~vl~l~V~NL~~~-vt~~~L~~~Fs~y----G~V~~v~i~~~------------~G------------------------ 62 (124)
T 2e5i_A 24 KVLLLSIQNPLYP-ITVDVLYTVCNPV----GKVQRIVIFKR------------NG------------------------ 62 (124)
T ss_dssp SEEEEEEESCCSC-CCHHHHHHHHTTT----SCEEEEEEEES------------SS------------------------
T ss_pred cEEEEEEcCcCCC-CCHHHHHHHHHhc----CCEEEEEEEeC------------CC------------------------
Confidence 3445668999996 8999999999987 89999999641 02
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
|||.|++.+++.|..-...++|.++.--++.|.+-|-
T Consensus 63 -----------f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 63 -----------IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp -----------EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred -----------CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4899999999999999999999999765555655543
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.36 E-value=0.08 Score=45.10 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|... .|..
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~------------~g~~--------------------- 54 (103)
T 2d9p_A 13 YQVVNLYVKNLDDG-IDDERLRKAFSPF----GTITSAKVMME------------GGRS--------------------- 54 (103)
T ss_dssp SSCCCEEEECCCTT-CCHHHHHHTTTTT----SCEEEEEEEEC------------SSSE---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcC------------CCCc---------------------
Confidence 47889999999995 9999999999876 67999998642 1211
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 55 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 90 (103)
T 2d9p_A 55 -----------KGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLYVALA 90 (103)
T ss_dssp -----------EEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEEC
T ss_pred -----------CEEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEe
Confidence 358999999999999999999999874 455555553
No 17
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.35 E-value=0.084 Score=45.78 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|-||.|+ +...||..+|+.| |.|..|.|...
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~i~~~------------------------------------- 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPS-GSWQDLKDHMREA----GDVCYADVYRD------------------------------------- 50 (108)
T ss_dssp SCCCEEEEESCCSS-CCHHHHHHHHGGG----SCEEEEEEETT-------------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEecC-------------------------------------
Confidence 46789999999986 8999999999987 67999988542
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
-||.|+|.+.+.|......++|.++.-
T Consensus 51 ------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 51 ------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 389999999999999999999999864
No 18
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.31 E-value=0.088 Score=45.05 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=62.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|.... .|.
T Consensus 27 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~-----------~g~---------------------- 68 (107)
T 3ulh_A 27 ETGGKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVHYDR-----------SGR---------------------- 68 (107)
T ss_dssp CCSEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECT-----------TSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECC-----------CCC----------------------
Confidence 58899999999996 8889999999976 789999986431 111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
---||.|+|.+.+.|......++|..+. +..|-++|.
T Consensus 69 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 105 (107)
T 3ulh_A 69 ----------SLGTADVHFERKADALKAMKQYNGVPLD--GRPMNIQLV 105 (107)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEE
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEe
Confidence 1348999999999999999999999885 455555554
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.29 E-value=0.057 Score=45.02 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=58.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~~----------------------- 54 (95)
T 2cqc_A 13 DPNCCLGVFGLSLY-TTERDLREVFSKY----GPIADVSIVYDQQ----------SR----------------------- 54 (95)
T ss_dssp CGGGCEEEESCCSS-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SS-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeeEEEEEEcCC----------CC-----------------------
Confidence 47899999999997 9999999999987 6899998864210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.---||.|+|.+.+.|......++|..+.
T Consensus 55 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 55 ---------RSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ---------CcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 11358999999999999999999998885
No 20
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.29 E-value=0.08 Score=46.61 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++.|=|.||.|+ +.-.||..+|+.| |.|.+|.|-++ .
T Consensus 13 ~p~~~l~V~nLp~~-~te~~L~~~F~~f----G~V~~v~i~~~------------k------------------------ 51 (104)
T 1wex_A 13 SVSPVVHVRGLCES-VVEADLVEALEKF----GTICYVMMMPF------------K------------------------ 51 (104)
T ss_dssp CCCSEEEEESCCSS-CCHHHHHHHHTTT----SCEEEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEECC------------C------------------------
Confidence 47899999999996 8999999999877 79999988652 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
=||.|+|.+.+.|......++|..+..-+..|-+.|-
T Consensus 52 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 52 ------------RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 1899999999999999999888665555555555443
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.29 E-value=0.048 Score=48.30 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
+.+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-|+
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~g~--------------------------------- 46 (116)
T 2fy1_A 5 DHPGKLFIGGLNRE-TNEKMLKAVFGKH----GPISEVLLIKDRTSK--------------------------------- 46 (116)
T ss_dssp CSCCEEEEECCTTT-CCHHHHHHHHHTS----SCCSEEEEECSTTTT---------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCCCC---------------------------------
Confidence 47889999999996 9999999999988 679999987532110
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
---||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 47 ----------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 82 (116)
T 2fy1_A 47 ----------SRGFAFITFENPADAKNAAKDMNGKSLHG--KAIKVEQ 82 (116)
T ss_dssp ----------CCCEEEEECSSHHHHHHHHHHCSSCBCSS--SBCEEEE
T ss_pred ----------cccEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 12489999999999999999999998854 4444444
No 22
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.27 E-value=0.05 Score=45.35 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=59.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|. . +
T Consensus 7 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~~-----------------~--------------~------ 44 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA-CTSQELRSLFERR----GRVIECDVV-----------------K--------------D------ 44 (90)
T ss_dssp CCSCCEEEESCCTT-CCHHHHHHHHHHH----SCEEEEEEC-----------------S--------------S------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHcC----CCEEEEEEE-----------------C--------------C------
Confidence 47889999999995 9999999999988 679999885 1 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 45 -------------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 77 (90)
T 2dnp_A 45 -------------YAFVHMEKEADAKAAIAQLNGKEVK--GKRINVEL 77 (90)
T ss_dssp -------------CEEEEESCHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred -------------EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 8999999999999999999998885 34444444
No 23
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.091 Score=43.77 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=58.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.| ++...||..+|+.| |.|.+|.|. .
T Consensus 6 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~~~--------------~------------------------ 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPR-EATEQEIRSLFEQY----GKVLECDII--------------K------------------------ 42 (90)
T ss_dssp SCCEEEEEESCCS-SCCHHHHHHHHHTS----SCEEEEEEE--------------T------------------------
T ss_pred CCCeEEEEeCCCC-CCCHHHHHHHHHhC----CCEEEEEEE--------------C------------------------
Confidence 4789999999999 58999999999987 789999985 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 43 ------------g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 76 (90)
T 2dnq_A 43 ------------NYGFVHIEDKTAAEDAIRNLHHYKLHG--VNINVEA 76 (90)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEEEC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCccCC--cEEEEEE
Confidence 189999999999999999999988753 4444443
No 24
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.10 E-value=0.068 Score=47.13 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.| |.|..|.|...
T Consensus 14 r~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~~~i~~~------------------------------------- 51 (115)
T 3beg_B 14 RSENRVVVSGLPPS-GSWQDLKDHMREA----GDVCYADVYRD------------------------------------- 51 (115)
T ss_dssp ---CCEEEEECCSS-CCTTHHHHHHGGG----SCEEEEEECTT-------------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEecC-------------------------------------
Confidence 35789999999985 7899999999987 68999988542
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
=||.|+|.+.+.|......++|.++.-
T Consensus 52 ------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 52 ------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp ------------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 389999999999999999999998854
No 25
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.02 E-value=0.052 Score=46.07 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=60.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|-++
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~~~~~------------------------------------- 50 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD-ITEEEMRKLFEKY----GKAGEVFIHKD------------------------------------- 50 (99)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHHTSTT----CCCSEEEEETT-------------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhc----CCeEEEEEecC-------------------------------------
Confidence 36789999999996 9999999999887 67888887421
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
-=||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 51 -----------kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 86 (99)
T 2cpj_A 51 -----------KGFGFIRLETRTLAEIAKVELDNMPLR--GKQLRVRFA 86 (99)
T ss_dssp -----------TTEEEEECSSSHHHHHHHHHHTTCCBT--TBCCEEEES
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCEeC--CceEEEEEc
Confidence 028999999999999999999999976 455655554
No 26
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.92 E-value=0.069 Score=51.60 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=64.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
...+|-|-||.|. |+-.+|.-+|+.| |.|.+|.|+.-. +
T Consensus 45 ~vl~l~VgNL~~~-vted~L~~~Fs~f----G~V~~V~i~~k~-------------~----------------------- 83 (164)
T 1sjr_A 45 PVLRIIVENLFYP-VTLDVLHQIFSKF----GTVLKIITFTKN-------------N----------------------- 83 (164)
T ss_dssp CEEEEEECSCCSC-CCHHHHHHHHHHH----SCEEEEEEEESS-------------S-----------------------
T ss_pred ceEEEEEeCcCCC-CCHHHHHHHHHhc----CCEEEEEEEeCC-------------C-----------------------
Confidence 3456779999996 9999999999998 899999995210 0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc-CCCCc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI-PDTME 306 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV-PDd~~ 306 (704)
=+||.|+|.+.+.|..-...++|.++.--++.|.+.|- |.+..
T Consensus 84 ----------rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 84 ----------QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp ----------CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred ----------CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccc
Confidence 16999999999999999999999999764566666554 44333
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.91 E-value=0.16 Score=42.13 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
....++|-|.||.|+ +...||..+|+.| |.|.+|.|... .|..
T Consensus 5 ~~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~~~i~~~------------~g~~-------------------- 47 (92)
T 2dgv_A 5 SSGACQIFVRNLPFD-FTWKMLKDKFNEC----GHVLYADIKME------------NGKS-------------------- 47 (92)
T ss_dssp SSSCCEEEECSCCTT-CCHHHHHHHHHTT----SCEEEEEEEES------------SSCE--------------------
T ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcc------------CCCc--------------------
Confidence 357899999999985 8999999999987 78999998741 1211
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 48 ------------~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~ 82 (92)
T 2dgv_A 48 ------------KGCGVVKFESPEVAERACRMMNGMKLSG--REIDVRI 82 (92)
T ss_dssp ------------EEEEEEEESSHHHHHHHHHHHTTCCBTT--BCCCCEE
T ss_pred ------------ceEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEE
Confidence 2479999999999999999999998763 4444443
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.91 E-value=0.081 Score=45.80 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- |
T Consensus 13 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~~-----------g----------------------- 53 (114)
T 2do0_A 13 RLGSTVFVANLDYK-VGWKKLKEVFSMA----GVVVRADILEDKD-----------G----------------------- 53 (114)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT-----------C-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC-----------C-----------------------
Confidence 47899999999996 8999999999987 7899998864210 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.---||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 54 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 90 (114)
T 2do0_A 54 ---------KSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMHVKM 90 (114)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ---------CeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEEE
Confidence 01348999999999999999999999986 45555554
No 29
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.89 E-value=0.096 Score=45.77 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=65.6
Q ss_pred ccCCCCCCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCC
Q 005276 166 EAIPEIDNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (704)
Q Consensus 166 ed~p~~~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~ 245 (704)
..++.....+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g---------------- 65 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFN-ITEDMLRGIFEPF----GRIESIQLMMDSE----------TG---------------- 65 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSS-CCHHHHHHHHTTT----SCEEEEEEEEETT----------TT----------------
T ss_pred cccccCCCCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEEcCC----------CC----------------
Confidence 345566678999999999995 9999999999887 7899998864210 00
Q ss_pred ChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 246 ~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
+. --||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 66 ---------------~~-~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~V~~ 102 (108)
T 2jrs_A 66 ---------------RS-KGYGFITFSDSECAKKALEQLNGFELA--GRPMKVGH 102 (108)
T ss_dssp ---------------EE-EEEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEEC
T ss_pred ---------------cc-ceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 11 248999999999999999999998775 34444444
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.87 E-value=0.064 Score=45.73 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=61.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|...... |
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~~----------~----------------------- 52 (103)
T 2dnm_A 11 DGMITLKVDNLTYR-TSPDSLRRVFEKY----GRVGDVYIPREPHT----------K----------------------- 52 (103)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEECCBCSSS----------C-----------------------
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCCC----------C-----------------------
Confidence 57899999999997 8999999999987 78999987532100 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 53 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~ 89 (103)
T 2dnm_A 53 ---------APRGFAFVRFHDRRDAQDAEAAMDGAELDG--RELRVQV 89 (103)
T ss_dssp ---------SBCSCEEEEESSSSHHHHHHHHHSSCCBTT--BCCEEEE
T ss_pred ---------CCCeEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEE
Confidence 012489999999999999999999988753 4444444
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.82 E-value=0.16 Score=43.40 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.| ++...+|..+|+.| |.|.+|.|...-- .|
T Consensus 21 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 62 (106)
T 1p27_B 21 VEGWILFVTGVHE-EATEEDIHDKFAEY----GEIKNIHLNLDRR----------TG----------------------- 62 (106)
T ss_dssp TTBEEEEEECCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhcc----CCeEEEEEEecCC----------CC-----------------------
Confidence 4678999999999 69999999999998 7899999864210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
..-=||.|+|.+.+.|......++|..+. +..|-++
T Consensus 63 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 98 (106)
T 1p27_B 63 ---------YLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVD 98 (106)
T ss_dssp ---------SEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEE
T ss_pred ---------ceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEE
Confidence 01248999999999999999999998876 3444443
No 32
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.80 E-value=0.11 Score=45.14 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||.-+|+.| |.|.+|.|... |..
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~-------------~~~--------------------- 46 (115)
T 3lqv_A 6 EVNRILYIRNLPYK-ITAEEMYDIFGKY----GPIRQIRVGNT-------------PET--------------------- 46 (115)
T ss_dssp TCCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEECS-------------TTT---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeeC-------------CCC---------------------
Confidence 47899999999985 8899999999977 78999998631 100
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
-=||.|+|.+.+.|......++|..+.
T Consensus 47 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 47 -----------RGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp -----------TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 127999999999999999999999875
No 33
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.76 E-value=0.068 Score=57.11 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=65.3
Q ss_pred ccCCCCCCCCceeEEecc--CCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCC
Q 005276 166 EAIPEIDNETHRLAIVNM--DWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDD 243 (704)
Q Consensus 166 ed~p~~~~~T~RLAvvNm--DWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~ 243 (704)
.++.....+|+.|-|.|+ .|. +.-.||..+|+.| |.|.+|.|.+ |..
T Consensus 9 ~~v~~~~~ps~~l~VgN~gl~~~-~te~~L~~~F~~~----G~V~~v~~~~--------------~kg------------ 57 (345)
T 3tht_A 9 EGIETVSYATQSLVVANGGLGNG-VSRNQLLPVLEKC----GLVDALLMPP--------------NKP------------ 57 (345)
T ss_dssp TTCCCCSSCCSEEEEETCSGGGT-CCHHHHHHHHHTT----SCEEEEECCT--------------TCS------------
T ss_pred CCceecCCCCCEEEEEcCCCCCC-CCHHHHHHHHHhc----CCeEEEEEeC--------------CCC------------
Confidence 345565679999999995 565 9999999999988 8999998754 101
Q ss_pred CCChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc-cccc--ccccccc
Q 005276 244 EDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE-RSSN--KLDLRFI 301 (704)
Q Consensus 244 ~~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E-~San--~lDLRFV 301 (704)
||.|+|.+.+.|...+++++|.++. ..+. .|=|.||
T Consensus 58 ----------------------faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 58 ----------------------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp ----------------------EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred ----------------------EEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 9999999999999999999999994 2233 3444555
No 34
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.11 Score=44.83 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=60.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|....
T Consensus 20 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~v~~~~i~~~~------------------------------------ 58 (109)
T 1x4a_A 20 NNDCRIYVGNLPP-DIRTKDIEDVFYKY----GAIRDIDLKNRR------------------------------------ 58 (109)
T ss_dssp CCSSEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEECCSS------------------------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECC------------------------------------
Confidence 4789999999999 68999999999998 789999883210
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
+ ---||.|+|.+.+.|......++|..+. ...|-++|
T Consensus 59 --------~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 95 (109)
T 1x4a_A 59 --------G-GPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRLRVEF 95 (109)
T ss_dssp --------S-SSCCEEEEESCHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred --------C-CCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 0 1248999999999999999999999875 34444443
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.74 E-value=0.12 Score=43.53 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 47 (99)
T 1whw_A 6 SGSGRLFVRNLSYT-SSEEDLEKLFSAY----GPLSELHYPIDSL----------TK----------------------- 47 (99)
T ss_dssp CSCEEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCCCTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEEecCC----------CC-----------------------
Confidence 47889999999996 8999999999987 7888888743210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 48 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 84 (99)
T 1whw_A 48 ---------KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GRMLHVLP 84 (99)
T ss_dssp ---------CCCSEEEEEESSHHHHHHHHHHTTTEESS--SCEEEEEE
T ss_pred ---------CcCeEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 11248999999999999999999999886 44554444
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.092 Score=44.72 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=61.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 54 (103)
T 2cq0_A 13 DDNATIRVTNLSED-TRETDLQELFRPF----GSISRIYLAKDKT----------TG----------------------- 54 (103)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHTTSTTT----CCEEEEEEEECSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeEEEEEeecCC----------CC-----------------------
Confidence 47899999999997 9999999999877 7899998864210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.-.-||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 55 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 91 (103)
T 2cq0_A 55 ---------QSKGFAFISFHRREDAARAIAGVSGFGYD--HLILNVEW 91 (103)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHHHHTTTCEET--TEECEEEE
T ss_pred ---------ceeeEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEE
Confidence 11358999999999999999999999876 34444444
No 37
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.69 E-value=0.056 Score=46.84 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|=|.||.|+.+.-.||..+|+.| |.|.+|.| +.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i-----------------~~---------------------- 62 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV-----------------HK---------------------- 62 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE-----------------ET----------------------
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE-----------------eC----------------------
Confidence 568999999999999999999999987 67888888 11
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
-||.|+|.+.+.|......++|..+. +..|-++|.
T Consensus 63 -----------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 97 (110)
T 1wf1_A 63 -----------GYAFVQYSNERHARAAVLGENGRVLA--GQTLDINMA 97 (110)
T ss_dssp -----------TEEEEECSSSHHHHHHHHHHTTCEET--TEECCEEES
T ss_pred -----------CEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEC
Confidence 28999999999999999999999885 445555443
No 38
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.66 E-value=0.094 Score=46.01 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++.|=|.||.| .+.-.||..+|+.| |.|.+|.|-+. .
T Consensus 13 ~p~~~l~V~nLp~-~~te~~L~~~F~~f----G~v~~v~i~~~------------k------------------------ 51 (101)
T 2cq1_A 13 APSRVLHIRKLPG-EVTETEVIALGLPF----GKVTNILMLKG------------K------------------------ 51 (101)
T ss_dssp SCCSEEEEESCCT-TCCHHHHHHTTTTT----SCEEEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCEEEEEEECC------------C------------------------
Confidence 5789999999999 68999999999877 78999987542 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..++..+..|-+.|
T Consensus 52 ------------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 52 ------------NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 289999999999999998775433333344443333
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=94.63 E-value=0.11 Score=43.72 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=60.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
++++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 1 P~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g------------------------ 41 (96)
T 2x1f_A 1 PSRVVYLGSIPYD-QTEEQILDLCSNV----GPVINLKMMFDPQ----------TG------------------------ 41 (96)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCTT----------TC------------------------
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCC----------CC------------------------
Confidence 4789999999985 8899999999988 7899998753210 01
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.---||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 42 --------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 78 (96)
T 2x1f_A 42 --------RSKGYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGY 78 (96)
T ss_dssp --------CBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred --------ccceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 112489999999999999999999988764 4444444
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.61 E-value=0.14 Score=43.60 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.| ++...||..+|+.| |.|.+|.|.... .+
T Consensus 13 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~-----------~~----------------------- 53 (103)
T 2cqi_A 13 GQPRTLYVGNLSR-DVTEVLILQLFSQI----GPCKSCKMITEH-----------TS----------------------- 53 (103)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHHHHH----SCEEEEEEECCC-----------CS-----------------------
T ss_pred CCCCEEEEeCCCc-cCCHHHHHHHHHhc----CCEeEEEEEecC-----------CC-----------------------
Confidence 4789999999999 58999999999988 689999886530 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 54 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 90 (103)
T 2cqi_A 54 ----------NDPYCFVEFYEHRDAAAALAAMNGRKIL--GKEVKVNWA 90 (103)
T ss_dssp ----------SCCEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred ----------CCCEEEEEECCHHHHHHHHHHhCCCCcC--CCeEEEEEC
Confidence 0138999999999999999999999886 455555543
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.50 E-value=0.16 Score=43.24 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=62.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|....- ..|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~---------~~~----------------------- 55 (107)
T 2cph_A 13 QTTSKILVRNIPFQ-ANQREIRELFSTF----GELKTVRLPKKMT---------GTG----------------------- 55 (107)
T ss_dssp SCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCCCCS---------SSC-----------------------
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHcc----CCeEEEEEecCCC---------CCC-----------------------
Confidence 47899999999995 8999999999987 6899988754210 000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhc-Ccccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ec-DG~E~E~San~lDLRFV 301 (704)
..--||.|+|.+.+.|......+ +|..+. +..|-++|-
T Consensus 56 ---------~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~~l~v~~a 94 (107)
T 2cph_A 56 ---------AHRGFGFVDFITKQDAKKAFNALCHSTHLY--GRRLVLEWA 94 (107)
T ss_dssp ---------SSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SCBCEEEEC
T ss_pred ---------CcCceEEEEECCHHHHHHHHHHhccCCeEC--CCEEEEEeC
Confidence 01238999999999999999999 999887 455555554
No 42
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.46 E-value=0.1 Score=45.73 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|. .
T Consensus 29 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~--------------k------------------------ 65 (108)
T 2jvo_A 29 LSNTRLFVRPFPLD-VQESELNEIFGPF----GPMKEVKIL--------------N------------------------ 65 (108)
T ss_dssp CSCSEEEECSSCTT-CCHHHHHHHHTTT----SCCCEEEEE--------------T------------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEE--------------C------------------------
Confidence 47899999999996 8899999999877 678888885 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
=||.|+|.+.+.|......++|..+.
T Consensus 66 ------------g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 66 ------------GFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp ------------TEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 18999999999999999999999884
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.45 E-value=0.18 Score=41.20 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 5 ~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~------------------------ 45 (87)
T 3bs9_A 5 SHFHVFVGDLSPE-ITTAAIAAAFAPF----GRISDARVVKDMA----------TG------------------------ 45 (87)
T ss_dssp -CEEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC------------------------
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEEecCC----------CC------------------------
Confidence 6789999999997 9999999999987 6799998853210 00
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
..--||.|+|.+.+.|......++|..+.-
T Consensus 46 --------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 46 --------KSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --------CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred --------ccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 113489999999999999999999988753
No 44
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.44 E-value=0.13 Score=45.72 Aligned_cols=65 Identities=23% Similarity=0.190 Sum_probs=55.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++.|-|.||.|+ +.-.||..+|+.| |.|.+|.|-++ .
T Consensus 19 ~ps~~l~V~NLp~~-~te~~L~~lF~~f----G~V~~v~i~~~------------k------------------------ 57 (100)
T 3r27_A 19 PASPVVHIRGLIDG-VVEADLVEALQEF----GPISYVVVMPK------------K------------------------ 57 (100)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEETT------------T------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHhcc----CCEEEEEEEcC------------C------------------------
Confidence 48899999999987 7899999999988 78999998531 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
=||.|++.+.+.|....+.++|..+.
T Consensus 58 ------------g~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 58 ------------RQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHhcCCCce
Confidence 18999999999999999999987654
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.43 E-value=0.11 Score=47.42 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++.|=|-||.|+ +.-.||..+|+.| |.|.+|.|-++ .
T Consensus 29 ~ps~~LfVgNLp~~-vte~dL~~lF~~f----G~V~~v~i~~~------------k------------------------ 67 (119)
T 2ad9_A 29 VPSRVIHIRKLPID-VTEGEVISLGLPF----GKVTNLLMLKG------------K------------------------ 67 (119)
T ss_dssp SCCSEEEEESCCTT-CCHHHHHHHHTTT----SCCCEEEEEGG------------G------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC------------C------------------------
Confidence 57899999999997 9999999999977 78999998642 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDL 298 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDL 298 (704)
=||.|+|.+.+.|......++|.-++.-+..|-+
T Consensus 68 ------------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 68 ------------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp ------------TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 1899999999999999998886433333334333
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.42 E-value=0.2 Score=41.80 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=62.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 3 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~~----------------------- 44 (95)
T 2dnz_A 3 SGSSGLYVGSLHFN-ITEDMLRGIFEPF----GKIDNIVLMKDSD----------TG----------------------- 44 (95)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEECCSS----------SC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCEeEEEEeecCC----------CC-----------------------
Confidence 36889999999996 8999999999987 6899998863210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.-.-||.|+|.+.+.|......++|..+. +..|-++|.
T Consensus 45 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 82 (95)
T 2dnz_A 45 ---------RSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVGHV 82 (95)
T ss_dssp ---------CCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEEES
T ss_pred ---------ceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEc
Confidence 11348999999999999999999998875 455655554
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.41 E-value=0.14 Score=43.57 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 54 (105)
T 1x5u_A 13 NQDATVYVGGLDEK-VSEPLLWELFLQA----GPVVNTHMPKDRV----------TG----------------------- 54 (105)
T ss_dssp CTTTEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCBCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC-----------------------
Confidence 47899999999996 8999999999988 7899988753210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.---||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 55 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 91 (105)
T 1x5u_A 55 ---------QHQGYGFVEFLSEEDADYAIKIMDMIKLYG--KPIRVNK 91 (105)
T ss_dssp ---------SBCSCEEEEESSHHHHHHHHHHSSSCBCSS--CBCEEEE
T ss_pred ---------cCCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 012389999999999999999999988763 4444444
No 48
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.11 Score=43.96 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=55.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
..++|=|.||.| ++...||..+|+.| |.|.+|.|.++
T Consensus 26 ~~~~l~V~nlp~-~~~~~~l~~~f~~~----G~i~~~~~~~~-------------------------------------- 62 (101)
T 2la4_A 26 RVTTAYIGNIPH-FATEADLIPLFQNF----GFILDFKHYPE-------------------------------------- 62 (101)
T ss_dssp SCCEEEEESCCT-TCCHHHHHHHHHTT----SCCSEEEEETT--------------------------------------
T ss_pred CCCEEEEcCCCc-ccCHHHHHHHHHhC----CCEEEEEEecC--------------------------------------
Confidence 468999999999 78999999999988 78999988510
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
--||.|+|.+.+.|......++|..+.
T Consensus 63 ----------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 63 ----------KGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp ----------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ----------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 127999999999999999999999886
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.25 E-value=0.16 Score=45.94 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||.-+|+.| |.|.+|.|..... .|.
T Consensus 44 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg~---------------------- 86 (129)
T 2kxn_B 44 DPNCCLGVFGLSLY-TTERDLREVFSKY----GPIADVSIVYDQQ----------SRR---------------------- 86 (129)
T ss_dssp CCSSCBCEETCTTS-CCHHHHHHHHTTT----SCEEEEEEECCSS----------SSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCc----------------------
Confidence 57899999999997 8999999999877 7899998864210 010
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
---||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 87 ----------~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l~V~~ 122 (129)
T 2kxn_B 87 ----------SRGFAFVYFENVDDAKEAKERANGMELD--GRRIRVDF 122 (129)
T ss_dssp ----------CCCEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEESC
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEE
Confidence 1238999999999999999999998875 34444433
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.25 E-value=0.064 Score=45.53 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 10 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 51 (102)
T 2cqb_A 10 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TE----------------------- 51 (102)
T ss_dssp CCCSCEEEESCCSS-CCHHHHHHHHTTT----SCCCCEECCCCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHhhcc----CCEEEEEEEecCC----------CC-----------------------
Confidence 47899999999997 9999999999987 6788887743210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 52 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 88 (102)
T 2cqb_A 52 ---------KHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNL 88 (102)
T ss_dssp ---------CCSSEEEECCSSHHHHHHHHHHHTTEEET--TEEEEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEe
Confidence 11348999999999999999999998886 44444444
No 51
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.22 E-value=0.11 Score=45.72 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
..++|-|-||.|+ +.-.||..+|+.| |.|.+|.|-++
T Consensus 9 ~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~-------------------------------------- 45 (111)
T 1whx_A 9 SKTVILAKNLPAG-TLAAEIQETFSRF----GSLGRVLLPEG-------------------------------------- 45 (111)
T ss_dssp EEEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCSS--------------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC--------------------------------------
Confidence 4678999999997 7999999999987 78988887530
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCC
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTM 305 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPDd~ 305 (704)
| -||.|+|.+.+.|...+..++|..|. +..|-+.|-+..+
T Consensus 46 ---------~-g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~~~ 85 (111)
T 1whx_A 46 ---------G-ITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYLEWAPIGV 85 (111)
T ss_dssp ---------S-SCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEEEEETTT
T ss_pred ---------C-CEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEEECCCCc
Confidence 0 16999999999999999999999986 5667777776643
No 52
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.21 E-value=0.17 Score=42.39 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=58.5
Q ss_pred CCCceeEEeccCCCccchhhHH----HHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 173 NETHRLAIVNMDWRHVKAVDLL----VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~----vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.++++|=|.||.| ++...||. .+|+.| |.|.+|.|.. .|..
T Consensus 6 ~~~~~l~V~nLp~-~~~~~~l~~~l~~~f~~~----G~i~~v~i~~-------------~~~~----------------- 50 (97)
T 1nu4_A 6 RPNHTIYINNLNE-KIKKDELKKSLHAIFSRF----GQILDILVSR-------------SLKM----------------- 50 (97)
T ss_dssp CCCSEEEEESCCT-TSCHHHHHHHHHHHHGGG----SCEEEEECCH-------------HHHH-----------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhC----CCEEEEEEEc-------------CCCc-----------------
Confidence 5889999999998 57888888 677665 7898888751 1211
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
--||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 51 ---------------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 85 (97)
T 1nu4_A 51 ---------------RGQAFVIFKEVSSATNALRSMQGFPFY--DKPMRIQY 85 (97)
T ss_dssp ---------------TTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ---------------CcEEEEEeCCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 128999999999999999999998884 45555544
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.21 E-value=0.24 Score=41.88 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|.... .|.
T Consensus 15 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~-----------~g~---------------------- 56 (100)
T 2do4_A 15 LEKHKLFISGLPFS-CTKEELEEICKAH----GTVKDLRLVTNR-----------AGK---------------------- 56 (100)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECT-----------TSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeEEEEEEECC-----------CCC----------------------
Confidence 46789999999995 8999999999987 789999987531 111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
---||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 57 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 92 (100)
T 2do4_A 57 ----------PKGLAYVEYENESQASQAVMKMDGMTIKE--NIIKVAI 92 (100)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEE
T ss_pred ----------EEeEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence 13489999999999999999999988763 4444433
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.17 E-value=0.26 Score=42.70 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 54 (115)
T 2dgo_A 13 SNHFHVFVGDLSPE-ITTEDIKAAFAPF----GRISDARVVKDMA----------TG----------------------- 54 (115)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEEcCC----------CC-----------------------
Confidence 46789999999996 8999999999988 7899998864210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.---||.|+|.+.+.|......|+|..+.- ..|-++|-
T Consensus 55 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a 92 (115)
T 2dgo_A 55 ---------KSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWA 92 (115)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHTTTCEETT--EECEEEES
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEc
Confidence 113489999999999999999999988764 45555553
No 55
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.16 E-value=0.098 Score=42.89 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||..+|+.| |.|.+|.|.+..- .|.
T Consensus 3 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~~---------------------- 45 (85)
T 1x4e_A 3 SGSSGLYIRGLQPG-TTDQDLVKLCQPY----GKIVSTKAILDKT----------TNK---------------------- 45 (85)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHTTSTTT----SCEEEEEEECCSS----------SCS----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCC----------------------
Confidence 47899999999995 8889999888877 7899998864211 010
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
. --||.|+|.+.+.|......++|..+.
T Consensus 46 ---------~-~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 46 ---------C-KGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp ---------C-CSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred ---------c-CcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 1 138999999999999999999998654
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.11 E-value=0.24 Score=45.45 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|...-. .|
T Consensus 37 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 78 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY-TTEEQIYELFSKS----GDIKKIIMGLDKM----------KK----------------------- 78 (156)
T ss_dssp TTCCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC-----------------------
Confidence 47899999999985 8999999999988 6799999864211 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.---||.|+|.+.+.|......|+|..+. ...|-+.|-
T Consensus 79 ---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 116 (156)
T 1h2v_Z 79 ---------TACGFCFVEYYSRADAENAMRYINGTRLD--DRIIRTDWD 116 (156)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHTTTSEET--TEECEEEEE
T ss_pred ---------ccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 11358999999999999999999999985 455555554
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.02 E-value=0.2 Score=43.57 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=61.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 64 (115)
T 2cpz_A 23 PEGANLFIYHLPQE-FGDQDLLQMFMPF----GNVVSAKVFIDKQ----------TN----------------------- 64 (115)
T ss_dssp STTCCEEEESCCSS-CCHHHHHHHHGGG----SCCSEEEEEECSS----------SC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC----------CC-----------------------
Confidence 46789999999996 8899999999988 6788888753210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+. ...|-++|
T Consensus 65 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 101 (115)
T 2cpz_A 65 ---------LSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLKVQL 101 (115)
T ss_dssp ---------SEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred ---------CcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 11349999999999999999999998886 34444444
No 58
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.91 E-value=0.094 Score=47.35 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|=|.||.|+.++-.||..+|+.| |.|.+|.|-++ .
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~~---------------k--------------------- 62 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMRM---------------K--------------------- 62 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEETT---------------T---------------------
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEecC---------------C---------------------
Confidence 5789999999999889999999999877 78999998421 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
=||.|+|.+.+.|......++|...
T Consensus 63 ------------g~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 63 ------------SQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp ------------TEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCc
Confidence 1899999999999999998876443
No 59
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.87 E-value=0.16 Score=49.46 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCC-ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG-~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
.++++|-|.||.| .+.-.+|.-+|+.| | .|.+|.|+|..
T Consensus 149 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~----G~~i~~v~i~~~~----------------------------------- 188 (229)
T 2adc_A 149 PPSATLHLSNIPP-SVSEEDLKVLFSSN----GGVVKGFKFFQKD----------------------------------- 188 (229)
T ss_dssp CSCSEEEEECCCT-TCCHHHHHHHHHTT----SCCEEEEEECSSS-----------------------------------
T ss_pred CCCCEEEEeCCCc-cCCHHHHHHHHHHc----CCCeeEEEEEECC-----------------------------------
Confidence 4689999999999 58899999999988 7 99999998721
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
| -||.|+|.+.+.|......++|..+. .+..|-+.|
T Consensus 189 -----------~-g~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v~~ 224 (229)
T 2adc_A 189 -----------R-KMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 224 (229)
T ss_dssp -----------T-TCEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEEEE
T ss_pred -----------C-cEEEEEECCHHHHHHHHHHHCCCccC-CCCeEEEEE
Confidence 0 28999999999999999999999884 244555444
No 60
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.80 E-value=0.25 Score=45.03 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=60.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +.-.||..+|+.| |.|.+|.|... |
T Consensus 71 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~v~i~~~--------------~---------------------- 109 (150)
T 2i2y_A 71 PLDCKVYVGNLGNN-GNKTELERAFGYY----GPLRSVWVARN--------------P---------------------- 109 (150)
T ss_dssp TTSCEEEEESCCSC-CSCHHHHHHHHHH----SCEEEEEECSS--------------S----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhh----CCEEEEEEeeC--------------C----------------------
Confidence 47899999999995 7999999999998 78999998542 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 110 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 144 (150)
T 2i2y_A 110 -----------PGFAFVEFEDPRDAADAVRELDGRTLC--GCRVRVEL 144 (150)
T ss_dssp -----------CSEEEEEESSHHHHHHHHHHHSSSCSS--SSCCEEEE
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 128999999999999999999998874 45554444
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=93.77 E-value=0.25 Score=46.07 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=58.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.| ++...||..+|+.| |.|.+|.|...-. .|
T Consensus 70 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 111 (165)
T 1rk8_A 70 VEGWILFVTSIHE-EAQEDEIQEKFCDY----GEIKNIHLNLDRR----------TG----------------------- 111 (165)
T ss_dssp C-CEEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHhhcC----CCEEEEEEEecCC----------CC-----------------------
Confidence 4678999999999 69999999999988 7899999865310 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.--=||.|+|.+.+.|......|+|+.+.-
T Consensus 112 ---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 112 ---------FSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------cEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 012489999999999999999999988753
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.77 E-value=0.15 Score=43.26 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 10 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 51 (102)
T 1x5s_A 10 SDEGKLFVGGLSFD-TNEQSLEQVFSKY----GQISEVVVVKDRE----------TQ----------------------- 51 (102)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHHHH----SCCCEEEECCCSS----------SC-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCC----------CC-----------------------
Confidence 47889999999996 8999999999988 6788888854210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
...-||.|+|.+.+.|......++|..+.-
T Consensus 52 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 52 ---------RSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp ---------SCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred ---------CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 112489999999999999999999998753
No 63
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=93.74 E-value=0.12 Score=48.44 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCC-ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG-~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
.++++|-|.||.|+ +.-.||.-+|+.| | .|.+|.|+|..
T Consensus 118 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~~v~~v~i~~~~----------------------------------- 157 (198)
T 1qm9_A 118 PPSATLHLSNIPPS-VSEEDLKVLFSSN----GGVVKGFKFFQKD----------------------------------- 157 (198)
T ss_dssp CCCCEEEECCCCTT-CCHHHHHHHHHHT----TSCCCEEEESSTT-----------------------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHc----CCCceEEEEEeCC-----------------------------------
Confidence 46899999999994 7899999999998 6 89999998831
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
| -||.|+|.+.+.|......++|..+. .+..|-+.|
T Consensus 158 -----------~-g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~ 193 (198)
T 1qm9_A 158 -----------R-KMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 193 (198)
T ss_dssp -----------S-SCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCEEE
T ss_pred -----------C-cEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEEEe
Confidence 0 27999999999999999999999884 244454444
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=93.66 E-value=0.32 Score=39.40 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=58.7
Q ss_pred CceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 175 T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
|.+|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 1 t~~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~------------------------- 40 (83)
T 3md1_A 1 TFNLFVGDLNVN-VDDETLRNAFKDF----PSYLSGHVMWDMQ----------TG------------------------- 40 (83)
T ss_dssp CEEEEEECCCTT-CCHHHHHHHHTTS----TTEEEEEEEECTT----------TC-------------------------
T ss_pred CeEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEcCC----------CC-------------------------
Confidence 678999999996 8999999999877 7899998854210 01
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
..--||.|+|.+.+.|......++|..+. +..|-++
T Consensus 41 -------~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~ 76 (83)
T 3md1_A 41 -------SSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRIN 76 (83)
T ss_dssp -------CEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred -------CccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEE
Confidence 11348999999999999999999999885 3444443
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=93.56 E-value=0.23 Score=42.24 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.| ++...||..+|+.| |.|.+|.|....- |-
T Consensus 13 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~---------------------- 54 (105)
T 2dnh_A 13 GRDRKLFVGMLNK-QQSEEDVLRLFQPF----GVIDECTVLRGPD-----------GS---------------------- 54 (105)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHHTTT----SCEEEEEEEECSS-----------SC----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECCC-----------CC----------------------
Confidence 4689999999999 57899999999977 6799999865310 10
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc-ccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER-SSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~-San~lDLRF 300 (704)
. --||.|+|.+.+.|......++|..+.- ....|-++|
T Consensus 55 ---------~-~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 55 ---------S-KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp ---------E-EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred ---------c-CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 1 2489999999999999999999998764 224444443
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.47 E-value=0.13 Score=45.36 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=58.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
++++.|=|.||.|.+++-.||..+|+-| |.|.+|.|-++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------------------------------------- 51 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------------------------------------- 51 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS-------------------------------------
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC-------------------------------------
Confidence 4789999999999889999999999977 89999998531
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKL 296 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~l 296 (704)
| -||-|+|.+.+.|....+.++|...+.-+..|
T Consensus 52 ----------k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 52 ----------I-NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp ----------S-SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ----------C-CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 0 16999999999999999998876543333333
No 67
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.43 E-value=0.2 Score=43.58 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||.-+|+.| |.|.+|.|..... .|
T Consensus 38 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~----------~g----------------------- 79 (118)
T 2khc_A 38 PEGCNLFIYHLPQE-FTDTDLASTFLPF----GNVISAKVFIDKQ----------TS----------------------- 79 (118)
T ss_dssp CCSEEEEEECSCTT-CCHHHHHHHTTTS----CEEEEEEECCCSS----------SS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEeCCC----------CC-----------------------
Confidence 46789999999997 8999999999876 7899998853210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
...=||.|+|.+.+.|......++|..+.-
T Consensus 80 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 80 ---------LSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp ---------CCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred ---------CcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 012489999999999999999999988763
No 68
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.40 E-value=0.28 Score=42.01 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 54 (111)
T 1x4h_A 13 TEGKTVFIRNLSFD-SEEEALGEVLQQF----GDLKYVRVVLHPD----------TE----------------------- 54 (111)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCSS----------SC-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC-----------------------
Confidence 57899999999997 8999999999987 6898888743200 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcC------ccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACD------GVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecD------G~E~E~San~lDLRF 300 (704)
..-=||.|+|.+.+.|......++ |..+. +..|-++|
T Consensus 55 ---------~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~--g~~l~v~~ 97 (111)
T 1x4h_A 55 ---------HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD--GRQLKVDL 97 (111)
T ss_dssp ---------CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--SCEEEEEC
T ss_pred ---------CCccEEEEEECCHHHHHHHHHHhccccccCCcEEc--CEEEEEEE
Confidence 112489999999999999999999 88875 34444444
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.37 E-value=0.27 Score=40.85 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=56.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..-+ |-
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~~----------~~---------------------- 56 (94)
T 2e5h_A 14 PSKSTVYVSNLPFS-LTNNDLYRIFSKY----GKVVKVTIMKDKDT----------RK---------------------- 56 (94)
T ss_dssp CCTTSEEEESCCTT-SCHHHHHHHTTTT----SCEEEEEECCCSSS----------CC----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCCC----------CC----------------------
Confidence 36789999999985 7889999999887 68999988652110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
---||.|+|.+.+.|......++|..+.
T Consensus 57 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 57 ----------SKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp ----------CTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred ----------cccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 0137999999999999999999998876
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=93.31 E-value=0.22 Score=40.54 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||.-+|+.| |.|.+|.|....- .|
T Consensus 5 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 46 (85)
T 3mdf_A 5 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TE----------------------- 46 (85)
T ss_dssp CCSSEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEECCEETT----------TT-----------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHhcc----CCEEEEEEEECCC----------CC-----------------------
Confidence 47899999999987 8899999999987 6888888732100 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
...=||.|+|.+.+.|......++|..+.
T Consensus 47 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 47 ---------KHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp ---------EECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ---------ccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 11348999999999999999999999885
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.22 E-value=0.45 Score=40.36 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhc-ccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSS-FLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~S-F~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
..+++|=|.||.|+ +...||..+|+. | |.|.+|.|.... .|.
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~----G~v~~v~i~~~~-----------~g~--------------------- 49 (104)
T 2dhg_A 7 GPEYSLFVGDLTPD-VDDGMLYEFFVKVY----PSCRGGKVVLDQ-----------TGV--------------------- 49 (104)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHHHHHC----TTEEEEEEEECT-----------TCC---------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhC----CCeEEEEEEECC-----------CCC---------------------
Confidence 47899999999997 899999999998 6 689999886421 111
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccc-ccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVE-FER 291 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E-~E~ 291 (704)
.--||.|+|.+.+.|......++|.. +.-
T Consensus 50 -----------~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 50 -----------SKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp -----------EEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred -----------ccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 13489999999999999999999988 653
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.22 E-value=0.17 Score=42.21 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEE-EEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSV-AVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV-~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
++++|-|.||.|+ +...||..+|+.| |.|.+| .|..... .|
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~i~~~~~----------~g----------------------- 45 (96)
T 1x5t_A 4 GSSGIFIGNLDPE-IDEKLLYDTFSAF----GVILQTPKIMRDPD----------TG----------------------- 45 (96)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTT----SCBSSCCEECCCTT----------TC-----------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEEcCC----------CC-----------------------
Confidence 6789999999997 8999999999987 567666 5543200 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.---||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 46 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 82 (96)
T 1x5t_A 46 ---------NSKGYAFINFASFDASDAAIEAMNGQYLCN--RPITVSY 82 (96)
T ss_dssp ---------SCCSEEEEEBSSHHHHHHHHHTTTTCEETT--EECEEEE
T ss_pred ---------CcCeEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEE
Confidence 012489999999999999999999999853 4444433
No 73
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.22 E-value=0.14 Score=43.41 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=58.3
Q ss_pred ceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHH
Q 005276 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (704)
Q Consensus 176 ~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR 255 (704)
.+|=|.||.| ++...||..+|+.| |.|.+|.|.+. +
T Consensus 1 ~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~--------------~------------------------- 36 (101)
T 2hvz_A 1 MKVYVGNLGT-GAGKGELERAFSYY----GPLRTVWIARN--------------P------------------------- 36 (101)
T ss_dssp CEEEEECCCS-SCSHHHHHHHHHHH----CCCSEEEEESS--------------S-------------------------
T ss_pred CEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEeeC--------------C-------------------------
Confidence 3788999999 48999999999988 67888888654 1
Q ss_pred HHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 256 ~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|..+. +..|-+++-
T Consensus 37 --------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 72 (101)
T 2hvz_A 37 --------PGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELS 72 (101)
T ss_dssp --------SSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEES
T ss_pred --------CCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEc
Confidence 138999999999999999999999875 444555443
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=93.21 E-value=0.31 Score=42.89 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=59.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|..-.. .|
T Consensus 20 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 61 (126)
T 3ex7_B 20 VEGWILFVTGVHEE-ATEEDIHDKFAEY----GEIKNIHLNLDRR----------TG----------------------- 61 (126)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEECCBCTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC-----------------------
Confidence 46889999999997 8999999999976 6888888743210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
.--=||.|+|.+.+.|......|+|..+.- ..|-+.
T Consensus 62 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 97 (126)
T 3ex7_B 62 ---------YLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISVD 97 (126)
T ss_dssp ---------SBCSCEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEE
T ss_pred ---------ccceEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEE
Confidence 012389999999999999999999998853 444443
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.18 E-value=0.14 Score=43.50 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
+..+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 5 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~~----------~g---------------------- 47 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYE-ATEEQLKDIFSEV----GPVVSFRLVYDRE----------TG---------------------- 47 (104)
T ss_dssp HHHHSCEEEESCCTT-SCHHHHHHHHHTT----SCCSEEEEEEETT----------TT----------------------
T ss_pred CCCccEEEEeCCCCc-CCHHHHHHHHHhc----CCeeEEEEEeCCC----------CC----------------------
Confidence 357899999999986 8899999999987 6788888754210 00
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.---||.|+|.+.+.|......++|..+.
T Consensus 48 ----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 48 ----------KPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp ----------EEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred ----------ccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 11358999999999999999999998874
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.18 E-value=0.27 Score=41.34 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceE-EEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL-SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~-sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
..+++|=|-||.|+ +...||..+|+.| |.|. +|.|.+.-. .|
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~v~i~~~~~----------~g---------------------- 49 (99)
T 2div_A 7 GMAASLWMGDLEPY-MDENFISRAFATM----GETVMSVKIIRNRL----------TG---------------------- 49 (99)
T ss_dssp SSSSEEEECSCCTT-CCHHHHHHHHHHT----TCCCCEEEEEECSS----------SC----------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHh----CCcceEEEEeecCC----------CC----------------------
Confidence 47899999999997 9999999999987 6777 888754210 00
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S 292 (704)
..--||.|+|.+.+.|......++|..+.-.
T Consensus 50 ----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 50 ----------IPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp ----------CEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred ----------CcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 1124799999999999999999999887543
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.06 E-value=0.35 Score=41.53 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=57.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.| ++...+|..+|+.| |.|.+|.|...-. .|
T Consensus 24 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 65 (110)
T 1oo0_B 24 VEGWILFVTSIHE-EAQEDEIQEKFCDY----GEIKNIHLNLDRR----------TG----------------------- 65 (110)
T ss_dssp TTBEEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEECCBCTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCEEEEEEEecCC----------CC-----------------------
Confidence 4788999999999 79999999999988 7899988743110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.---||.|+|.+.+.|......++|..+.
T Consensus 66 ---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 66 ---------FSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp ---------SBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 01238999999999999999999998875
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.96 E-value=0.49 Score=40.88 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|.... .|.
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~-----------~g~---------------------- 64 (114)
T 1x5o_A 23 QDPTNLYISNLPLS-MDEQELENMLKPF----GQVISTRILRDS-----------SGT---------------------- 64 (114)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHTTTTT----SCEEEEEEEECS-----------SSC----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECC-----------CCC----------------------
Confidence 46789999999996 8999999999876 689999886531 011
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
---||.|+|.+.+.|......++|..+..
T Consensus 65 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 65 ----------SRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp ----------EEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 13489999999999999999999999854
No 79
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=92.90 E-value=0.2 Score=54.72 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++.|-|.||.|+ |...+|..+|+.| |.|.+|.|..--. .|
T Consensus 100 ~~~~~lfV~nL~~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg----------------------- 141 (437)
T 3pgw_S 100 DAFKTLFVARVNYD-TTESKLRREFEVY----GPIKRIHMVYSKR----------SG----------------------- 141 (437)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----CCeeEEEeeccCC----------CC-----------------------
Confidence 57889999999996 7899999999987 7899998863200 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNK 295 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~ 295 (704)
.--=||.|+|.+.+.|...+..|+|+.|.-.-..
T Consensus 142 ---------~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 142 ---------KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred ---------CccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 0123899999999999999999999988544333
No 80
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=92.87 E-value=0.24 Score=48.16 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.++.|=|-||+|..|...+|+.+|+.| |.|.+|.|...- .
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~~-----------~------------------------- 42 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKSK-----------P------------------------- 42 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTTS-----------T-------------------------
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecCC-----------C-------------------------
Confidence 578899999997789999999999876 899999985310 0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S 292 (704)
=||.|+|.+.+.|......++|+++.-.
T Consensus 43 -----------g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 43 -----------GAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp -----------TCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred -----------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 2799999999999999999999998653
No 81
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=92.85 E-value=0.26 Score=48.03 Aligned_cols=76 Identities=13% Similarity=0.284 Sum_probs=63.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|..+...+|..+|+.| |.|.+|.|.... .
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~-----------~------------------------ 72 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----------K------------------------ 72 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTT-----------S------------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECC-----------C------------------------
Confidence 4789999999999999999999999988 779999986531 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
=||.|+|.+.+.|......++|..+. +..|-+.+.
T Consensus 73 ------------g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a 107 (229)
T 2adc_A 73 ------------ENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLS 107 (229)
T ss_dssp ------------CCEEEEESCHHHHHHHHHHHTTCBCS--SSBCEEECC
T ss_pred ------------CEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEe
Confidence 16999999999999999999998884 355555544
No 82
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.83 E-value=0.53 Score=42.06 Aligned_cols=80 Identities=13% Similarity=0.280 Sum_probs=62.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.| ++...||..+|+.| |.|.+|.|.+... .|
T Consensus 87 ~~~~l~v~nl~~-~~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~g------------------------ 127 (167)
T 1fxl_A 87 RDANLYVSGLPK-TMTQKELEQLFSQY----GRIITSRILVDQV----------TG------------------------ 127 (167)
T ss_dssp TTCEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TC------------------------
T ss_pred CCCcEEECCCCC-cCCHHHHHHHHHhc----CCEeEEEEEecCC----------CC------------------------
Confidence 568899999998 57899999999987 7899999876321 11
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+.-....|-++|
T Consensus 128 --------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 128 --------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp --------CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred --------CccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 113489999999999999999999998865444444443
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.81 E-value=0.4 Score=41.64 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=59.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 56 (116)
T 2cqd_A 15 TTFTKIFVGGLPYH-TTDASLRKYFEGF----GDIEEAVVITDRQ----------TG----------------------- 56 (116)
T ss_dssp CSSSEEEEECCCSS-CCHHHHHHHHHTT----SCEEEEEESCCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCeeEEEEEEcCC----------CC-----------------------
Confidence 47899999999995 8999999999987 7799998853210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++| .+. ...|-+++
T Consensus 57 ---------~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~l~V~~ 92 (116)
T 2cqd_A 57 ---------KSRGYGFVTMADRAAAERACKDPNP-IID--GRKANVNL 92 (116)
T ss_dssp ---------CCCSEEEEEESSHHHHHHHHTCSSC-EET--TEECEEEE
T ss_pred ---------ccceEEEEEECCHHHHHHHHHhCCC-cCC--CEEEEEEE
Confidence 0124899999999999999999998 554 44454444
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.77 E-value=0.4 Score=42.87 Aligned_cols=65 Identities=11% Similarity=0.200 Sum_probs=54.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ ++-.||..+|+.| |.|.+|.|-++ .
T Consensus 14 ~~~~~LfV~nLp~~-vte~dL~~lF~~f----G~V~~v~i~~~------------k------------------------ 52 (105)
T 1sjq_A 14 VPSRVIHIRKLPID-VTEGEVISLGLPF----GKVTNLLMLKG------------K------------------------ 52 (105)
T ss_dssp CCCCEEEECSCCTT-SCHHHHHHHHHHH----CCEEEEEEETT------------T------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEcC------------C------------------------
Confidence 46789999999997 9999999999988 78999998652 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCc--cccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDG--VEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG--~E~E 290 (704)
=||.|+|.+.+.|......++| .++.
T Consensus 53 ------------GfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 53 ------------NQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred ------------CEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 1899999999999999988764 4543
No 85
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=92.76 E-value=0.27 Score=48.79 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=59.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| .+...+|..+|+.| |.|.+|.|.+..
T Consensus 205 ~~~~~l~v~nl~~-~~~~~~l~~~F~~~----G~i~~v~~~~~~------------------------------------ 243 (282)
T 3pgw_A 205 PPNHILFLTNLPE-ETNELMLSMLFNQF----PGFKEVRLVPGR------------------------------------ 243 (282)
T ss_pred CCCCEEEEeCCCC-cCCHHHHHHHHHhc----CCeEEEEEecCC------------------------------------
Confidence 3678899999998 58999999999988 899999998411
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDL 298 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDL 298 (704)
-=||.|+|.+.+.|......++|..+.. +..|-+
T Consensus 244 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~l~v 277 (282)
T 3pgw_A 244 -----------HDIAFVEFDNEVQAGAARDALQGFKITQ-NNAMKI 277 (282)
T ss_pred -----------CcEEEEEeCCHHHHHHHHHHcCCcEeCC-CCEEEE
Confidence 0289999999999999999999988872 344433
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.72 E-value=0.27 Score=41.59 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=57.1
Q ss_pred CCceeEEeccCCCccchhhHH----HHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhh
Q 005276 174 ETHRLAIVNMDWRHVKAVDLL----VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~----vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~ 249 (704)
..++|=|.||.|+ +...||. .+|+.| |.|.+|.|.+..-+
T Consensus 8 ~~~~l~V~nL~~~-~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~------------------------------- 51 (96)
T 2dgx_A 8 NGADVQVSNIDYR-LSRKELQQLLQEAFARH----GKVKSVELSPHTDY------------------------------- 51 (96)
T ss_dssp SCEEEEEESCCTT-SCHHHHHHHHHHHHHHH----SCEEEEEECSCCST-------------------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC-------------------------------
Confidence 4579999999987 7888998 777766 78999988532100
Q ss_pred hHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
|- ||.|+|.+.+.|......++|.++. +..|-+.
T Consensus 52 -------------rg-~afV~f~~~~~A~~Ai~~l~g~~~~--gr~l~V~ 85 (96)
T 2dgx_A 52 -------------QL-KAVVQMENLQDAIGAVNSLHRYKIG--SKKILVS 85 (96)
T ss_dssp -------------TC-CEEEEESSHHHHHHHHHHHTTEEET--TEEEEEE
T ss_pred -------------Ce-EEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 11 6999999999999999999999876 3444443
No 87
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.71 E-value=0.34 Score=40.66 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+| |+... .
T Consensus 6 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~v-~~~~~----------------------------~------- 44 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG-VDSAQLSEYFLAF----GPVASV-VMDKD----------------------------K------- 44 (94)
T ss_dssp TTCCEEEEECCCTT-CCHHHHHHHGGGT----SCEEEE-EECSS----------------------------S-------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCeEEE-EEcCC----------------------------C-------
Confidence 35789999999995 8899999999977 678877 43210 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S 292 (704)
. + ||.|+|.+.+.|..... ++|..+.-.
T Consensus 45 -------g--~--~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 45 -------G--V--FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp -------C--C--EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred -------C--c--EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 0 1 99999999999999999 999988743
No 88
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=92.70 E-value=0.25 Score=43.37 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=56.6
Q ss_pred CceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 175 T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
+.+|=|-||.|+ +.-.||.-+|+.| |.|.+|.|.... .|
T Consensus 5 ~~~lfV~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~d~-----------~~------------------------- 43 (115)
T 4f25_A 5 SGNIFIKNLDKS-IDNKALYDTFSAF----GNILSCKVVCDE-----------NG------------------------- 43 (115)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEEET-----------TE-------------------------
T ss_pred CCEEEECCCCCC-CCHHHHHHHHhcc----CCEEEEEEeecC-----------CC-------------------------
Confidence 567999999996 8999999999988 899999986410 00
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
- -=||.|+|.+.+.|.....+++|..+.-
T Consensus 44 -------~-kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 44 -------S-KGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp -------E-EEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred -------C-CceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 1 1389999999999999999999998864
No 89
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=92.70 E-value=0.3 Score=41.59 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 11 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 52 (106)
T 2dgp_A 11 HDAIKLFIGQIPRN-LDEKDLKPLFEEF----GKIYELTVLKDRF----------TG----------------------- 52 (106)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHHHH----SCCCEEECCCCSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEecCC----------CC-----------------------
Confidence 47889999999996 8999999999998 6788887743110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc-ccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF-ERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~-E~San~lDLRF 300 (704)
+. -=||.|+|.+.+.|......++|..+ .-....|-++|
T Consensus 53 --------~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 53 --------MH-KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp --------SC-CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred --------Cc-ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 01 13899999999999999999999875 22344444444
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=92.62 E-value=0.24 Score=42.71 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCCceeEEeccCCCcc------chhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCC
Q 005276 172 DNETHRLAIVNMDWRHV------KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~I------rA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~ 245 (704)
+..+++|=|.||.| .+ .-.+|..+|+.| |.|.+|.|-. . .|.+
T Consensus 12 ~~~~~~l~V~nLp~-~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~-~-----------~g~~-------------- 60 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQ-VGPDRLEKLKNVIHKIFSKF----GKITNDFYPE-E-----------DGKT-------------- 60 (105)
T ss_dssp CSCCSEEEEESCCC-CCTTTTTHHHHHHHHHHGGG----SCEEEEECCC-B-----------TTBS--------------
T ss_pred CCCCCEEEEeCCCc-chhhhhHHHHHHHHHHHhcC----CCEEEEEeeC-C-----------CCCe--------------
Confidence 45688999999999 55 568999999987 7899987641 1 1211
Q ss_pred ChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccc-ccccccc
Q 005276 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSN-KLDLRFI 301 (704)
Q Consensus 246 ~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San-~lDLRFV 301 (704)
-=||.|+|.+.+.|...-..++|..+. +. .|-+.+.
T Consensus 61 ------------------~G~afV~f~~~~~A~~Ai~~l~g~~~~--g~~~l~V~~a 97 (105)
T 2nlw_A 61 ------------------KGYIFLEYASPAHAVDAVKNADGYKLD--KQHTFRVNLF 97 (105)
T ss_dssp ------------------CCEEEEEECSSSHHHHHHHHCSSEECS--TTCEEEEECS
T ss_pred ------------------eeEEEEEECCHHHHHHHHHHhCCcccC--CCceEEEEEc
Confidence 138999999999999999999999886 33 4444443
No 91
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.60 E-value=0.33 Score=42.80 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+.+.|=|.||.|+ |.-.||.-+|+.| |.|.+|.|..... .|
T Consensus 4 ~p~~~lfV~nL~~~-~te~~L~~~F~~~----G~i~~v~i~~d~~----------tg----------------------- 45 (110)
T 3s8s_A 4 IPLKEVTFARLNDN-VRETFLKDMCRKY----GEVEEVEILLHPR----------TR----------------------- 45 (110)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEECCCCC-CCHHHHHHHHHhc----CCeeEEEEEECCC----------CC-----------------------
Confidence 36789999999985 8999999999877 8999999864210 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
+. -=||.|+|.+.+.|......++|+++.- ..|-+.+-
T Consensus 46 --------~~-rG~aFV~f~~~~~A~~Ai~~lng~~~~g--r~i~V~~a 83 (110)
T 3s8s_A 46 --------KH-LGLARVLFTSTRGAKETVKNLHLTSVMG--NIIHAQLD 83 (110)
T ss_dssp --------CE-EEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred --------ce-eeEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEC
Confidence 11 3489999999999999999999999864 34444443
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=92.54 E-value=0.22 Score=42.55 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| | |.+|.|....- ..|
T Consensus 17 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G-i~~v~i~~~~~---------~~g----------------------- 58 (100)
T 2j76_E 17 SPPYTAFLGNLPYD-VTEESIKEFFRGL----N-ISAVRLPREPS---------NPE----------------------- 58 (100)
T ss_dssp ---CEEEESCCSSC-CSSSHHHHHSCSS----C-EEEEECSCCTT---------TTC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhc----C-CeEEEEEecCC---------cCC-----------------------
Confidence 57899999999997 9999999999988 6 99998743210 001
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+. --||.|+|.+.+.|.... .++|..+.-
T Consensus 59 --------~~-~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 59 --------RL-KGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --------CC-CSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred --------cc-CeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 11 238999999999999999 999998753
No 93
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.44 E-value=0.49 Score=40.21 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=59.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| | |.+|.|..... .|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g-i~~v~i~~~~~----------~g----------------------- 53 (103)
T 2dng_A 13 EPPYTAYVGNLPFN-TVQGDIDAIFKDL----S-IRSVRLVRDKD----------TD----------------------- 53 (103)
T ss_dssp SSCEEEEEESCCTT-CCHHHHHHHTTTS----C-EEEEEEEECSS----------SC-----------------------
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhC----C-ceEEEEeecCC----------CC-----------------------
Confidence 47899999999998 8999999999998 4 99999864210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.--=||.|+|.+.+.|.... +++|..+.- ..|-+++
T Consensus 54 ---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 89 (103)
T 2dng_A 54 ---------KFKGFCYVEFDEVDSLKEAL-TYDGALLGD--RSLRVDI 89 (103)
T ss_dssp ---------SEEEEEEEEESSHHHHHHHG-GGTTCEETT--EECEEEE
T ss_pred ---------ccceEEEEEECCHHHHHHHH-hhCCCeECC--eEEEEEE
Confidence 11248999999999999999 999988853 3444443
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=92.44 E-value=0.69 Score=39.03 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=56.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEE--------EEEecChhhHHhHHHHHhhCCccccCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--------VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~s--------V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~ 244 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+ |.|....- .|
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~----------~g--------------- 60 (99)
T 2la6_A 11 SDNNTIFVQGLGEN-VTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRE----------TG--------------- 60 (99)
T ss_dssp CCCSEEEEECCCSS-CCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTT----------TC---------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHh----CCEeeccccccccEEEEecCC----------CC---------------
Confidence 57899999999997 8999999999976 67777 66653210 00
Q ss_pred CChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 245 ~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
+. .-||.|+|.+.+.|......++|..+.
T Consensus 61 ----------------~~-~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 61 ----------------KL-KGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp ----------------SE-EEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred ----------------Ce-eeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 11 348999999999999999999999876
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=92.41 E-value=0.4 Score=39.11 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=56.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|.+....
T Consensus 3 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~~----------------------------------- 42 (88)
T 4a8x_A 3 KPTKVHIGRLTRN-VTKDHIMEIFSTY----GKIKMIDMPVERMH----------------------------------- 42 (88)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCEETTE-----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEeCCCC-----------------------------------
Confidence 4678999999987 6889999999876 78888887542210
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.+...-||.|+|.+.+.|......++|..+.-
T Consensus 43 ------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 43 ------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp ------EEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 01123489999999999999999999998863
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.35 E-value=0.27 Score=42.77 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=57.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|.... | |+
T Consensus 27 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~-~----------~~---------------------- 68 (109)
T 2err_A 27 SQPKRLHVSNIPFR-FRDPDLRQMFGQF----GKILDVEIIFNE-R----------GS---------------------- 68 (109)
T ss_dssp TCCCEEEEESCCTT-CCHHHHHHHGGGT----CCCSCEEECCBT-T----------BC----------------------
T ss_pred CCCCEEEEECCCCc-CCHHHHHHHHHhc----CCEEEEEEEECC-C----------CC----------------------
Confidence 47889999999996 9999999999987 688888885421 0 11
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
--||.|+|.+.+.|......++|..+.
T Consensus 69 -----------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 69 -----------KGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp -----------TTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred -----------ceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 138999999999999999999999875
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.32 E-value=0.71 Score=38.83 Aligned_cols=78 Identities=8% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 8 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~----------------------- 49 (99)
T 2dgs_A 8 SKSNKIFVGGIPHN-CGETELREYFKKF----GVVTEVVMIYDAE----------KQ----------------------- 49 (99)
T ss_dssp SSCCEEEEESCCSS-CCHHHHHHHHSSS----SCEEEEEECCCTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCC----------CC-----------------------
Confidence 47899999999997 9999999999987 7899998854210 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..-=||.|+|.+.+.|..... ++|..+. +..|-+++
T Consensus 50 ---------~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l~V~~ 85 (99)
T 2dgs_A 50 ---------RPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKVEVKR 85 (99)
T ss_dssp ---------SCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBCEEEE
T ss_pred ---------CCCceEEEEECCHHHHHHHHH-hCCCEEC--CeEEEEEE
Confidence 012389999999999999998 9998875 34444443
No 98
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.20 E-value=0.53 Score=40.53 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=56.3
Q ss_pred CceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 175 T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
..+|=|-||.|+ +.-.||..+|+.| |.|.+|.|..... .|
T Consensus 19 gt~lfV~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg------------------------- 58 (99)
T 4fxv_A 19 GTNLIVNYLPQN-MTQDELRSLFSSI----GEVESAKLIRDKV----------AG------------------------- 58 (99)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SC-------------------------
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEeEeeecCC----------CC-------------------------
Confidence 457999999995 8999999999987 7899999864210 01
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+. -=||.|+|.+.+.|......++|..+.-
T Consensus 59 ------~~-kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 59 ------HS-LGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp ------CE-EEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ------cc-cccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 11 2489999999999999999999998864
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=92.18 E-value=0.4 Score=42.26 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=63.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....-|
T Consensus 33 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~g---------------------------------- 73 (124)
T 2kt5_A 33 ETGAKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVDYDRSG---------------------------------- 73 (124)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHHHTT----SCCSEEEEECCSSS----------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEECCCC----------------------------------
Confidence 57899999999996 8899999999987 78889988542211
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (704)
..--||.|+|.+.+.|......++|..+. +..|-++|...
T Consensus 74 ---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~ 113 (124)
T 2kt5_A 74 ---------RSLGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVAS 113 (124)
T ss_dssp ---------SCCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEEEEEECC
T ss_pred ---------CEeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEeCC
Confidence 01248999999999999999999999875 45666666543
No 100
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.15 E-value=0.44 Score=42.62 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|...... |
T Consensus 40 ~~~~~l~V~nLp~-~~~~~~l~~~F~~~----G~i~~v~i~~~~~~----------~----------------------- 81 (139)
T 1u6f_A 40 DVLRNLMVNYIPT-TVDEVQLRQLFERY----GPIESVKIVCDRET----------R----------------------- 81 (139)
T ss_dssp TTTSEEEEESCST-TCCHHHHHHHHHHH----SCEEEEEEEEETTT----------T-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEEcCCC----------C-----------------------
Confidence 5789999999999 58899999999998 78999988532100 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..-=||.|+|.+.+.|......++|..+.- ..|-++|
T Consensus 82 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 118 (139)
T 1u6f_A 82 ---------QSRGYGFVKFQSGSSAQQAIAGLNGFNILN--KRLKVAL 118 (139)
T ss_dssp ---------EEEEEEEEEESSHHHHHHHHHHTTTEECSS--CEEEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEE
Confidence 113489999999999999999999988763 4444443
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.03 E-value=0.59 Score=41.45 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=57.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 61 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~----------------------- 102 (140)
T 2ku7_A 61 TTKRVLYVGGLAEE-VDDKVLHAAFIPF----GDITDIQIPLDYE----------TE----------------------- 102 (140)
T ss_dssp SSCCEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEECCCCTT----------TC-----------------------
T ss_pred CCCcEEEEEeCCCC-CCHHHHHHHHHhc----CCEEEEEEeecCC----------CC-----------------------
Confidence 47899999999996 8999999999988 7899988743210 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
..--||.|+|.+.+.|......++|..+.
T Consensus 103 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 103 ---------KHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp ---------CCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred ---------CcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 01248999999999999999999998876
No 102
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=91.86 E-value=0.25 Score=44.99 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=59.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 45 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 86 (135)
T 2lea_A 45 EGMTSLKVDNLTYR-TSPDTLRRVFEKY----GRVGDVYIPRDRY----------TK----------------------- 86 (135)
T ss_dssp GGCCCEEEECCCSS-CHHHHHHHHHGGG----SCCSEEECCCCSS----------SS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CC-----------------------
Confidence 47889999999996 8999999999987 6788887643110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
+. -=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 87 --------~~-~G~afV~F~~~~~A~~Ai~~l~g~~i~g--~~l~V~~ 123 (135)
T 2lea_A 87 --------ES-RGFAFVRFHDKRDAEDAMDAMDGAVLDG--RELRVQM 123 (135)
T ss_dssp --------SC-CSCCEEECSCHHHHHHHHTTTTTCCSSS--SCCEEEE
T ss_pred --------cc-ceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEE
Confidence 00 1389999999999999999999998763 4444443
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.71 E-value=0.44 Score=40.59 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=57.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~----------~g----------------------- 55 (105)
T 2dh8_A 14 DEIGKLFVGGLDWS-TTQETLRSYFSQY----GEVVDCVIMKDKT----------TN----------------------- 55 (105)
T ss_dssp SSSSEECCBSCCTT-CCHHHHHHHHHTT----SCEEEEEEEECSS----------SC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeeCCC----------CC-----------------------
Confidence 47899999999998 8999999999987 7899998865310 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.--=||.|+|.+.+.|...... +|..+.-
T Consensus 56 ---------~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 56 ---------QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp ---------CEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred ---------CcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 1124899999999999999998 9988764
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=91.60 E-value=0.45 Score=41.74 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 35 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~------------------------ 75 (124)
T 2jwn_A 35 DKRSVYVGNVDYG-STAQDLEAHFSSC----GSINRITILCDKF----------SG------------------------ 75 (124)
T ss_dssp HHTEEEEEEECTT-CCHHHHHHHHHTT----SCEEEEEEEEECT----------TS------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CC------------------------
Confidence 5789999999997 8999999999987 7899998864210 00
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.-.=||.|+|.+.+.|.... +++|..+.- ..|-+.+
T Consensus 76 --------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 111 (124)
T 2jwn_A 76 --------HPKGYAYIEFAERNSVDAAV-AMDETVFRG--RTIKVLP 111 (124)
T ss_dssp --------SCEEEEEEEESSHHHHHHHH-TTTTCEETT--EECEEEE
T ss_pred --------CcccEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEEE
Confidence 11358999999999999999 899998753 4444443
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.49 E-value=0.5 Score=40.23 Aligned_cols=78 Identities=6% Similarity=0.029 Sum_probs=58.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.| | |.+|.|..-.- ..|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G-i~~v~i~~~~~---------~~g----------------------- 54 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD-VTEESIKEFFRGL----N-ISAVRLPREPS---------NPE----------------------- 54 (104)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHTTTS----C-EEEEECCBCSS---------CTT-----------------------
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHHC----C-ceEEEEecCCC---------CCC-----------------------
Confidence 47799999999998 8999999999988 6 99998742110 000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|.... +++|..+.- ..|-++|
T Consensus 55 ---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~l~V~~ 90 (104)
T 1wi8_A 55 ---------RLKGFGYAEFEDLDSLLSAL-SLNEESLGN--KRIRVDV 90 (104)
T ss_dssp ---------SBCSCEEEEESSHHHHHHHH-GGGTCEETT--EECEEEE
T ss_pred ---------CcCeEEEEEECCHHHHHHHH-hcCCCEeCC--cEEEEEE
Confidence 11248999999999999999 999998753 3444443
No 106
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.23 E-value=0.83 Score=41.04 Aligned_cols=79 Identities=15% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
++++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- .|
T Consensus 2 ~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~i~~~~~----------~~------------------------ 42 (168)
T 1b7f_A 2 SNTNLIVNYLPQD-MTDRELYALFRAI----GPINTCRIMRDYK----------TG------------------------ 42 (168)
T ss_dssp CCSEEEEECCCTT-CCHHHHHHHHHTT----SCEEEEECCEETT----------TT------------------------
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEEeCC----------CC------------------------
Confidence 5789999999995 8999999999987 6899998865210 01
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.-.-||.|+|.+.+.|......++|+.+. +..|-+++.
T Consensus 43 --------~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 80 (168)
T 1b7f_A 43 --------YSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSYA 80 (168)
T ss_dssp --------EECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred --------ccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEec
Confidence 11248999999999999999999999885 445555544
No 107
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.08 E-value=1 Score=40.38 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.| .+...+|..+|+.| |.|.+|.|.+..- .|
T Consensus 87 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~----------------------- 128 (168)
T 1b7f_A 87 IKDTNLYVTNLPR-TITDDQLDTIFGKY----GSIVQKNILRDKL----------TG----------------------- 128 (168)
T ss_dssp TTTCEEEEESCCT-TCCHHHHHHHHTSS----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCCEEEeCCCC-CCCHHHHHHhhhcC----CcEEEEEEEEcCC----------CC-----------------------
Confidence 3678999999998 68999999999866 6899999876320 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
+. --||.|+|.+.+.|......++|..+.-....|-++
T Consensus 129 --------~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 129 --------RP-RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp --------CE-EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred --------Cc-ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 01 248999999999999999999999886544555444
No 108
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.03 E-value=0.69 Score=38.94 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.| | ++...||..+|+.| |.|.+|.|- +.
T Consensus 13 ~~~~~l~V~n--~-~~t~~~l~~~F~~~----G~i~~v~i~----------------~~--------------------- 48 (97)
T 1x5p_A 13 RKGNTLYVYG--E-DMTPTLLRGAFSPF----GNIIDLSMD----------------PP--------------------- 48 (97)
T ss_dssp CCCSEEEEEC--S-SCCHHHHHHHHTTT----SCEEEEEEE----------------TT---------------------
T ss_pred CCCCEEEEcC--C-CCCHHHHHHHHhhC----CCEEEEEec----------------CC---------------------
Confidence 3678999999 4 78999999999877 789999881 11
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 49 -----------~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~ 83 (97)
T 1x5p_A 49 -----------RNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNI 83 (97)
T ss_dssp -----------TTEEEEEESSHHHHHHHHHHTTTEEET--TEEEEEEC
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEE
Confidence 117999999999999999999999884 44554444
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=91.03 E-value=0.71 Score=37.77 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 5 ~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~------------------------ 45 (89)
T 3ucg_A 5 DARSIYVGNVDYG-ATAEELEAHFHGC----GSVNRVTILCDKF----------SG------------------------ 45 (89)
T ss_dssp HHTEEEEESCCTT-CCHHHHHHHHGGG----CCEEEEEEEESCS----------SS------------------------
T ss_pred cCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEecCC----------CC------------------------
Confidence 4689999999997 6899999999987 7899998864210 01
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
...=||.|+|.+.+.|.... .++|..+.-
T Consensus 46 --------~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 46 --------HPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp --------SCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred --------CcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 01248999999999999999 999998753
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.88 E-value=0.71 Score=39.80 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|-|.||.|+ +...||..+|+.|-+....+..|.+. .|-.
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~--------------~g~~--------------------- 66 (115)
T 2cpx_A 23 EPNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMM--------------TGRM--------------------- 66 (115)
T ss_dssp SCCSEEEEECCCTT-CCHHHHHHHTHHHHHSSSSCCEEEEE--------------CSSS---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCccceEEEEEcC--------------CCcc---------------------
Confidence 47899999999984 89999999999884332222444433 1111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 67 -----------~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~ 101 (115)
T 2cpx_A 67 -----------RGQAFITFPNKEIAWQALHLVNGYKLY--GKILVIEF 101 (115)
T ss_dssp -----------CSEEEEECSSHHHHHHHHHHSTTCBCS--SCBCEEEE
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 138999999999999999999998884 45555554
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=90.88 E-value=0.34 Score=43.25 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=56.2
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCC-ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG-~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...||=|-||.|+ ++..||.-+|+.| | .|..|.|+.-. +.
T Consensus 27 ~~~~l~VgnLp~~-~te~dL~~~F~~~----G~~v~~v~i~~~~-------------~r--------------------- 67 (111)
T 2jvr_A 27 KRYRITMKNLPEG-CSWQDLKDLAREN----SLETTFSSVNTRD-------------FD--------------------- 67 (111)
T ss_dssp CCEEEEEECSSCC-CCHHHHHHHHHHH----TCCCSEEECSSCS-------------SS---------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHh----CCeeEEEEEEcCC-------------CC---------------------
Confidence 4579999999997 7999999999988 5 78888875310 11
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S 292 (704)
=||.|+|.+.+.|......+||.++.-.
T Consensus 68 ------------GfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 68 ------------GTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp ------------CCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred ------------CEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 1899999999999999999999998643
No 112
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.82 E-value=0.41 Score=39.85 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.|-+ .|..|.|-
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~---vv~~~~~~--------------------------------------- 42 (93)
T 2cqh_A 6 SGMNKLYIGNLSPA-VTADDLRQLFGDRKL---PLAGQVLL--------------------------------------- 42 (93)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHTTC---CCSSCEEE---------------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCC---ceEEEEEc---------------------------------------
Confidence 47889999999997 899999999988743 13333331
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCc-cccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDG-VEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG-~E~E~San~lDLRF 300 (704)
.-=||.|+|.+.+.|......++| +.+.- ..|-+++
T Consensus 43 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ 79 (93)
T 2cqh_A 43 ----------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KIMEVDY 79 (93)
T ss_dssp ----------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EECEEEE
T ss_pred ----------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EEEEEEE
Confidence 013899999999999999999999 77753 4444443
No 113
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.73 E-value=0.37 Score=41.73 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 64 (114)
T 2cq4_A 23 RDARTVFCMQLAAR-IRPRDLEDFFSAV----GKVRDVRIISDRN----------SR----------------------- 64 (114)
T ss_dssp HHHTEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEEECCSCC----------SS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEeEEEEEecCC----------CC-----------------------
Confidence 46899999999997 8999999999887 7899998843110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.---||.|+|.+.+.|.... .++|..+.-
T Consensus 65 ---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 65 ---------RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp ---------SCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred ---------ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 01238999999999999999 999998753
No 114
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=90.71 E-value=0.45 Score=43.09 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=56.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCC-------ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCC
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-------QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDN 246 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG-------~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~ 246 (704)
.+++|=|-||.|+ +...||..+|+.|....| .|.+|.|..+
T Consensus 3 ~~~~l~V~nLp~~-~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------------------------------- 50 (172)
T 2g4b_A 3 SARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------------------------- 50 (172)
T ss_dssp GGGEEEEESCCTT-CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------------------------------
T ss_pred cccEEEEcCCCcc-cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------------------------------
Confidence 5789999999996 899999999999965445 7888877543
Q ss_pred hhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 247 DEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 247 ~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
-=||.|+|.+.+.|.... +++|+.+.
T Consensus 51 -----------------~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 51 -----------------KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp -----------------TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred -----------------CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 128999999999999999 99999874
No 115
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=90.65 E-value=1.2 Score=39.76 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|.+..- .|.
T Consensus 85 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~~---------------------- 127 (166)
T 3md3_A 85 DDTFNLFVGDLNVN-VDDETLRNAFKDF----PSYLSGHVMWDMQ----------TGS---------------------- 127 (166)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHTTS----TTEEEEEEEECTT----------TCC----------------------
T ss_pred CCCceEEECCCCCC-CCHHHHHHHHhcc----CCeeEEEEEecCC----------CCC----------------------
Confidence 46789999999984 6889999999866 7899999875310 111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
---||.|+|.+.+.|......++|..+.
T Consensus 128 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 128 ----------SRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp ----------EEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ----------cceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 1348999999999999999999999885
No 116
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.61 E-value=0.29 Score=45.87 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=61.0
Q ss_pred CceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 175 T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
+++|=|-||.|.++...+|..+|+.| |.|.+|.|.... .
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~-----------~-------------------------- 41 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----------K-------------------------- 41 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTC-----------S--------------------------
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCC-----------C--------------------------
Confidence 68899999999999999999999987 678888875421 0
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
=||.|+|.+.+.|......++|..+. +..|-+.+.
T Consensus 42 ----------g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~a 76 (198)
T 1qm9_A 42 ----------ENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLS 76 (198)
T ss_dssp ----------SCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEEEC
T ss_pred ----------CEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEEEe
Confidence 17999999999999999999998884 456666554
No 117
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.48 E-value=1.1 Score=40.47 Aligned_cols=80 Identities=24% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|.+..-| -
T Consensus 93 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~v~~~~~~~g-----------~---------------------- 134 (175)
T 3nmr_A 93 VEDRKLFIGMISKK-CTENDIRVMFSSF----GQIEECRILRGPDG-----------L---------------------- 134 (175)
T ss_dssp GGGSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTTS-----------C----------------------
T ss_pred CCCCeEEEcCCCCc-CCHHHHHHHHHhC----CCEEEEEEEECCCC-----------C----------------------
Confidence 36789999999997 8899999999987 67999999764211 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc-cccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS-SNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S-an~lDLRF 300 (704)
.--||.|+|.+.+.|......++|..+--. +..|-++|
T Consensus 135 ----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 135 ----------SRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred ----------EEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 135899999999999999999999876542 34444443
No 118
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.48 E-value=1.2 Score=38.77 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=60.0
Q ss_pred CCCceeEEeccCCCccc-----------hhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVK-----------AVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENS 241 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~Ir-----------A~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~ 241 (704)
.+|+-|-|.|| |+... -.||..+|+.| |.|.+|.|+.- + |.
T Consensus 13 ~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i~~~------------~-~~---------- 64 (112)
T 2dit_A 13 RHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLLFDR------------H-PD---------- 64 (112)
T ss_dssp CSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEEETT------------C-TT----------
T ss_pred CCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEEecC------------C-CC----------
Confidence 47889999999 44332 35788888866 78999988421 0 11
Q ss_pred CCCCChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCCcc
Q 005276 242 DDEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTMEF 307 (704)
Q Consensus 242 ~~~~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPDd~~F 307 (704)
=||.|+|.+.+.|......++|..|. +..|-+.|...-..|
T Consensus 65 -----------------------G~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 65 -----------------------GVASVSFRDPEEADYCIQTLDGRWFG--GRQITAQAWDGTTDY 105 (112)
T ss_dssp -----------------------CEEEEECSCHHHHHHHHHHSTTCEET--TEECEEEECCSCCCS
T ss_pred -----------------------EEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEeCCCCCc
Confidence 27999999999999999999999885 566666665443444
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.25 E-value=1.1 Score=40.87 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCCceeEEeccCCCccchhh----HHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 173 NETHRLAIVNMDWRHVKAVD----LLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~D----L~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.++++|=|.||.|. |.-.| |+.+|+.| |.|.+|.|..+ |..
T Consensus 27 ~p~~~LfV~nL~~~-~~e~~L~~~L~~~F~~~----G~I~~v~i~~~-------------~~~----------------- 71 (127)
T 2a3j_A 27 EPSQVVLITNINPE-VPKEKLQALLYALASSQ----GDILDIVVDLS-------------DDN----------------- 71 (127)
T ss_dssp SCCSEEEEESCCTT-SCHHHHHHHHHHHHHHH----SCEEEEEECCC-------------CSS-----------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHhccC----CCeEEEEeccC-------------CCc-----------------
Confidence 46789999999985 66666 45678877 78988877321 111
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
| =||.|+|.+.+.|......++|..+.-
T Consensus 72 --------------r-G~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 72 --------------S-GKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp --------------C-CCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred --------------C-CEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 1 279999999999999999999988753
No 120
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=90.13 E-value=1.2 Score=41.68 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=62.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|.+..- .|
T Consensus 123 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g----------------------- 164 (216)
T 2qfj_A 123 RAFNRIYVASVHQD-LSDDDIKSVFEAF----GKIKSATLARDPT----------TG----------------------- 164 (216)
T ss_dssp TTSCEEEEECCCTT-CCHHHHHHHHTTS----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCc-CCHHHHHHHHhcc----CCeeEEEEEecCC----------CC-----------------------
Confidence 46789999999997 8999999999887 7899999875310 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.-.-||.|+|.+.+.|......++|..|. +..|-++|
T Consensus 165 ---------~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~V~~ 201 (216)
T 2qfj_A 165 ---------KHKGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVGK 201 (216)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHHTTCBCS--SSBCEEEE
T ss_pred ---------CcCceEEEEecCHHHHHHHHHHccCCEeC--CcEEEEEE
Confidence 11358999999999999999999999875 44454444
No 121
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.09 E-value=0.73 Score=39.34 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCc-eEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQ-ILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~-I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...++|=|.||.| ++...||..+|+.| |. |.+|.|.+.+-+ .|..
T Consensus 6 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~---------~g~~-------------------- 51 (109)
T 2dis_A 6 SGNCRLFIGGIPK-MKKREEILEEIAKV----TEGVLDVIVYASAAD---------KMKN-------------------- 51 (109)
T ss_dssp CCSEEEEEECCCT-TSCHHHHHHHHHHH----STTEEEEECCSSSCT---------TTTT--------------------
T ss_pred cCCCEEEEeCCCC-cCCHHHHHHHHHHh----cCCceEEEEEccCCC---------CCCc--------------------
Confidence 3678999999999 58999999999998 44 999988633211 0111
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcC--ccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACD--GVEFERSSNKLDLRF 300 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecD--G~E~E~San~lDLRF 300 (704)
--||.|+|.+.+.|......++ |..+.- ..|-+.|
T Consensus 52 ------------~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~l~V~~ 88 (109)
T 2dis_A 52 ------------RGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDW 88 (109)
T ss_dssp ------------CCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BCCEEEE
T ss_pred ------------CcEEEEEecCHHHHHHHHHHhhCCCceecC--CeEEEEE
Confidence 1389999999999999999997 566653 4444444
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=90.06 E-value=0.8 Score=37.94 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
..++|=|-||.|+ +...||..+|+.| + |.+|.| + .
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~-~----v~~~~i-~---------------~----------------------- 38 (88)
T 1wg1_A 4 GSSGILVKNLPQD-SNCQEVHDLLKDY-D----LKYCYV-D---------------R----------------------- 38 (88)
T ss_dssp CCCCEEEESCCSS-CCHHHHHHHTCSS-C----CCCEEE-E---------------G-----------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhhC-C----eEEEEE-e---------------C-----------------------
Confidence 5688999999986 7889999999998 3 666666 2 0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCCCCcc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPDTMEF 307 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPDd~~F 307 (704)
. --||.|+|.+.+.|......++|.++. +..|-+++-|.++.+
T Consensus 39 --------~-~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~~~~~ 81 (88)
T 1wg1_A 39 --------N-KRTAFVTLLNGEQAQNAIQMFHQYSFR--GKDLIVQLQPTDALL 81 (88)
T ss_dssp --------G-GTEEEECCSCHHHHHHHHHHHTTEEET--TEEEEEEECCCCCCC
T ss_pred --------C-CcEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEEEcCCCceE
Confidence 0 128999999999999999999999885 567777777766543
No 123
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=89.90 E-value=0.37 Score=44.71 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCC-------CCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPK-------DGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDED 245 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~-------gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~ 245 (704)
..+++|=|-||.|+ +...||..+|+.|.+. ++.|.+|.+..|
T Consensus 2 ~~~~~l~V~nLp~~-~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~------------------------------ 50 (198)
T 2yh0_A 2 AMARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------------------------ 50 (198)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT------------------------------
T ss_pred CceeEEEEcCCCCC-CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC------------------------------
Confidence 36899999999996 7999999999988433 237888877432
Q ss_pred ChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 246 NDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 246 ~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-=||.|+|.+.+.|.... +++|..+.- ..|-+++
T Consensus 51 ------------------~g~afV~F~~~~~A~~Al-~l~g~~~~g--~~i~v~~ 84 (198)
T 2yh0_A 51 ------------------KNFAFLEFRSVDETTQAM-AFDGIIFQG--QSLKIRR 84 (198)
T ss_dssp ------------------TTEEEEEESCSHHHHHHG-GGTTEEETT--EEEEEEC
T ss_pred ------------------CCEEEEEeCCHHHHHHHH-HhcCCEEcC--ceEEEeC
Confidence 028999999999999999 899998753 3444443
No 124
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.78 E-value=0.68 Score=39.89 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=57.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceE--------EEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL--------SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~--------sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~ 244 (704)
..+++|=|.||.|+ +...||..+|+.| |.|. .|.|+.--. .|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~----------~g--------------- 62 (113)
T 2cpe_A 13 SDNSAIYVQGLNDS-VTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKE----------TG--------------- 62 (113)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTT----------TC---------------
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCC----------CC---------------
Confidence 47899999999974 7889999999987 5566 366543100 00
Q ss_pred CChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 245 ~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
...=||.|+|.+.+.|......++|..|. +..|-+++
T Consensus 63 -----------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 99 (113)
T 2cpe_A 63 -----------------KPKGDATVSYEDPPTAKAAVEWFDGKDFQ--GSKLKVSL 99 (113)
T ss_dssp -----------------SBCSEEEEEBSSHHHHHHHHHHHTTCEET--TEECEEEC
T ss_pred -----------------CeeeEEEEEECCHHHHHHHHHHcCCCccC--CCEEEEEE
Confidence 11348999999999999999999999986 34444443
No 125
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.68 E-value=0.7 Score=38.26 Aligned_cols=69 Identities=10% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.| + |.+|.|....- |-
T Consensus 8 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~-~----i~~v~i~~~~~-----------g~---------------------- 48 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN-VTEKNVMEFLAPL-K----PVAIRIVRNAH-----------GN---------------------- 48 (91)
T ss_dssp CCCCEEEEECCCSS-CCHHHHHHHHTTS-C----CSEEEEEECTT-----------SC----------------------
T ss_pred CCccEEEEECCCCC-CCHHHHHHHHhhC-C----ceEEEEEECCC-----------CC----------------------
Confidence 36789999999997 8899999999998 3 66777753211 10
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.-=||.|+|.+.+.|..... ++|..+.-
T Consensus 49 ----------~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 49 ----------KTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp ----------EEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred ----------CceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 12489999999999999999 99988753
No 126
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.37 E-value=0.53 Score=39.80 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=54.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +.-.||..+|+.| |.| .| +....
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g~v---~~---------------------~~~~~-------------- 49 (101)
T 2fc9_A 13 GESKTLVLSNLSYS-ATEETLQEVFEKA----TFI---KV---------------------PQNQN-------------- 49 (101)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHCSSC----SEE---EC---------------------CBCSS--------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CEE---EE---------------------EECCC--------------
Confidence 47899999999998 9999999999876 333 11 10000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
. ..-=||.|+|.+.+.|......++|..+. ...|-++|
T Consensus 50 -------g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 87 (101)
T 2fc9_A 50 -------G-KSKGYAFIEFASFEDAKEALNSCNKREIE--GRAIRLEL 87 (101)
T ss_dssp -------S-CBCSEEEEECSSHHHHHHHHHHTSSEEET--TEEEEEEE
T ss_pred -------C-CEeeEEEEEECCHHHHHHHHHHhCCCEeC--CeEEEEEE
Confidence 0 01248999999999999999999999887 44444444
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=89.34 E-value=0.98 Score=40.81 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=57.5
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|-||.| ++...||..+|+.| |.|.+|.|.+..- .|
T Consensus 93 ~~~~l~v~nlp~-~~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g------------------------ 133 (172)
T 2g4b_A 93 GAHKLFIGGLPN-YLNDDQVKELLTSF----GPLKAFNLVKDSA----------TG------------------------ 133 (172)
T ss_dssp TTTCEEEECCCT-TCCHHHHHHHHHTT----SCEEEEEEEECTT----------TC------------------------
T ss_pred CCCEEEEEcCCC-cCCHHHHHHHHHhc----CCceEEEEEecCC----------CC------------------------
Confidence 478999999999 78999999999977 7899999875310 01
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
..--||.|+|.+.+.|......++|..+.
T Consensus 134 --------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 134 --------LSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp --------SEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred --------CcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 11248999999999999999999998885
No 128
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.02 E-value=2.1 Score=36.18 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...+++|=|.||.|+ +...||..+|+.| |.|.+|.|..... .|
T Consensus 12 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g---------------------- 54 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWK-TTEQDLKEYFSTF----GEVLMVQVKKDLK----------TG---------------------- 54 (103)
T ss_dssp CCCCCCEEEESCCSS-CCHHHHHHHHGGG----SCEEEEEEEECSS----------SC----------------------
T ss_pred cCCCCEEEEEcCCCc-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CC----------------------
Confidence 357899999999995 8999999999988 7899998854210 00
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.---||.|+|.+.+.|.....+ |.. ..+..|.+++-
T Consensus 55 ----------~~~g~afV~f~~~~~a~~A~~~--~~~--~~g~~l~v~~a 90 (103)
T 2cqg_A 55 ----------HSKGFGFVRFTEYETQVKVMSQ--RHM--IDGRWCDCKLP 90 (103)
T ss_dssp ----------SEEEEEEEEESSHHHHHHHHHS--CEE--ETTEEEEEECC
T ss_pred ----------CccceEEEEECCHHHHHHHHHc--CCe--eCCeEEEEEec
Confidence 1135899999999999999885 442 23445555543
No 129
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=88.94 E-value=1.7 Score=38.76 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=61.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
++++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- .|-
T Consensus 1 s~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~~~~~~~----------~~~----------------------- 42 (167)
T 1fxl_A 1 SKTNLIVNYLPQN-MTQEEFRSLFGSI----GEIESCKLVRDKI----------TGQ----------------------- 42 (167)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEECTT----------TCC-----------------------
T ss_pred CcceEEEcCCCCC-CCHHHHHHHHHhc----CCeEEEEEEeCCC----------CCc-----------------------
Confidence 3678999999996 8999999999987 6899999875321 110
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--=||.|+|.+.+.|......++|+.+.. ..|-+.+.
T Consensus 43 ---------~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 79 (167)
T 1fxl_A 43 ---------SLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYA 79 (167)
T ss_dssp ---------EEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred ---------ceeEEEEEECCHHHHHHHHHHcCCCccCC--ceEEEEec
Confidence 12489999999999999999999988853 44444444
No 130
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.94 E-value=1 Score=39.14 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|=|.||.|+ +...||..+|+.| |.|.+|.|-.-.-| -
T Consensus 10 ~~~~lfV~~Lp~~-~te~~L~~~F~~~----G~v~~v~i~~d~~g-----------~----------------------- 50 (103)
T 1s79_A 10 KNRSVYIKGFPTD-ATLDDIKEWLEDK----GQVLNIQMRRTLHK-----------A----------------------- 50 (103)
T ss_dssp GGGCEEEECCCTT-CCHHHHHHHHHTS----SCEEEEEEECCCTT-----------S-----------------------
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHhhc----CCEEEEEEEECCCC-----------C-----------------------
Confidence 5688999999998 8999999999977 78999988531101 0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.| =||.|+|.+.+.|..... ++|+.|.-
T Consensus 51 --------~r-G~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 51 --------FK-GSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp --------CC-CEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred --------Cc-cEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 11 279999999999999998 89987753
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=88.72 E-value=1.2 Score=41.86 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...+|..+|+.| |.|.+|.|..... .|
T Consensus 26 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~----------~g----------------------- 67 (216)
T 2qfj_A 26 AIMSRVYVGSIYYE-LGEDTIRQAFAPF----GPIKSIDMSWDSV----------TM----------------------- 67 (216)
T ss_dssp HHHTEEEEECCCTT-CCHHHHHHHHGGG----SCEEEEEECCC-C----------C------------------------
T ss_pred CcCCEEEEECCCCC-CCHHHHHHHHHhC----CCEEEEEEeecCC----------CC-----------------------
Confidence 36789999999997 8999999999988 7899998854210 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
..--||.|+|.+.+.|......++|+.+.-
T Consensus 68 ---------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 68 ---------KHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp ---------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred ---------ccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 113489999999999999999999988754
No 132
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.64 E-value=0.59 Score=38.56 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.| |.|.+|.|... +
T Consensus 3 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~--------------~---------------------- 41 (88)
T 1wf0_A 3 SGSSGVFVGRCTGD-MTEDELREFFSQY----GDVMDVFIPKP--------------F---------------------- 41 (88)
T ss_dssp SCCCEEEEESCCSS-SCHHHHHHHSTTT----SCCCEEECCSS--------------C----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHc----CCeeEEEEecC--------------C----------------------
Confidence 36799999999997 8899999999987 77888887520 1
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
--||.|+|.+.+.|.. +.|..+......|.+.+
T Consensus 42 -----------~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 42 -----------RAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp -----------CSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred -----------CCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 1279999999999964 67776655555555544
No 133
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=88.59 E-value=0.89 Score=40.99 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|=|-||.|+ +.-.||..+|+.| |.|.+|.|.....| |++
T Consensus 2 ~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~~----------~~~---------------------- 44 (175)
T 3nmr_A 2 DAIKMFVGQVPRT-WSEKDLRELFEQY----GAVYEINVLRDRSQ----------NPP---------------------- 44 (175)
T ss_dssp CCEEEEEESCCTT-CCHHHHHHHHHTT----SCEEEEEEEEECSS----------SSC----------------------
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEecCCC----------CCC----------------------
Confidence 4679999999997 8999999999987 78999988653221 100
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
..-=||.|+|.+.+.|......++|+.+
T Consensus 45 --------~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 45 --------QSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp --------EEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred --------CcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 1245899999999999999999999876
No 134
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=88.52 E-value=1.2 Score=41.27 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=62.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| .+...||..+|+.| |.|.+|.|.+..- .|
T Consensus 112 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~----G~v~~~~~~~~~~----------~~----------------------- 153 (198)
T 2yh0_A 112 DSAHKLFIGGLPN-YLNDDQVKELLTSF----GPLKAFNLVKDSA----------TG----------------------- 153 (198)
T ss_dssp CCCCEEEEECCCT-TCCHHHHHHHHHTB----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHc----CCccEEEEeecCC----------CC-----------------------
Confidence 4789999999999 78999999999987 7899998865310 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 154 ---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 190 (198)
T 2yh0_A 154 ---------LSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQR 190 (198)
T ss_dssp ---------SEEEEEEEEESSSSHHHHHHHHHTTCEET--TEECEEEE
T ss_pred ---------CcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 11358999999999999999999999885 34444444
No 135
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=88.38 E-value=1.4 Score=43.53 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=57.7
Q ss_pred CCCceeEEeccCCCccchhh----HHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 173 NETHRLAIVNMDWRHVKAVD----LLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~D----L~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.++++|=|-||.|+ +.-.| |+.+|+.| |.|.+|.|.. .|..
T Consensus 7 ~~~~~l~V~nlp~~-~~~~~l~~~L~~~F~~~----G~i~~v~~~~-------------~~~~----------------- 51 (282)
T 3pgw_A 7 RPNHTIYINNLNEK-IKKDELKKSLYAIFSQF----GQILDILVSR-------------SLKM----------------- 51 (282)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHhcc----CCeEEEEEcC-------------CCCc-----------------
Confidence 57999999999986 67788 55666655 7999998753 1211
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|+.+.- ..|-+.|.
T Consensus 52 ---------------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 87 (282)
T 3pgw_A 52 ---------------RGQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQYA 87 (282)
T ss_pred ---------------ceEEEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEEe
Confidence 1489999999999999999999987754 44444443
No 136
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.04 E-value=1.9 Score=37.91 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
+.|..|=|-||+|. +.-.+|.-||.-| |.|.+|.|++| +|
T Consensus 5 ~~~~wL~VgNL~~~-~te~~L~~lF~q~----G~V~~~~l~~~------------kG----------------------- 44 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQ-IDGPTLRTLCMQH----GPLVSFHPYLN------------QG----------------------- 44 (89)
T ss_dssp CCCCEEEEECCCTT-CCCHHHHHHHHHH----SCEEEEEEETT------------TT-----------------------
T ss_pred CccceEEEeCCCcc-CCHHHHHHHHHhh----CCEEEEEEcCC------------Cc-----------------------
Confidence 56889999999997 8889999999876 78999999772 22
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNK 295 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~ 295 (704)
||.||+.+.+.|...-..++|+.+.-..-+
T Consensus 45 -------------faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 45 -------------IALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp -------------EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred -------------EEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 999999999999999999999888765433
No 137
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=87.97 E-value=0.9 Score=44.10 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=60.2
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCce--EEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhh
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQI--LSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEID 250 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I--~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d 250 (704)
.+++.|-|-||.|+ +.-.||-.+|+.| |.| .+|.|++.. | |+
T Consensus 121 ~p~~~l~v~NLp~~-~t~~~L~~~F~~~----G~v~~~~v~~~~~~-~----------~~-------------------- 164 (205)
T 3tyt_A 121 HPSNVLHFFNAPLE-VTEENFFEICDEL----GVKRPTSVKVFSGK-S----------ER-------------------- 164 (205)
T ss_dssp CCCSEEEEEEECTT-CCHHHHHHHHHHH----TCCCCSEEEECSCC-S----------SS--------------------
T ss_pred CCcceEEEeCCCCC-CCHHHHHHHHHhc----CCcceEEEEEEcCC-C----------CC--------------------
Confidence 46788999999995 8899999999987 556 899998752 1 00
Q ss_pred HHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccc
Q 005276 251 EEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSN 294 (704)
Q Consensus 251 ~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San 294 (704)
-=||.|+|.+.+.|...-..|+|.++..+.+
T Consensus 165 -------------~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 165 -------------SSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp -------------SEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred -------------ceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 1499999999999999999999999987654
No 138
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=87.92 E-value=1.1 Score=44.47 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=64.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+-....||..+|+.| |.|.+|.|.+..- |.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~-----------g~~--------------------- 225 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQD-----------GQL--------------------- 225 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECSS-----------CCE---------------------
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECCC-----------CCc---------------------
Confidence 4678999999999866889999999987 7899999876321 211
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|..|. +..|-+.|.
T Consensus 226 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 261 (284)
T 3smz_A 226 -----------KGFAVLEYETAEMAEEAQQQADGLSLG--GSHLRVSFC 261 (284)
T ss_dssp -----------EEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred -----------ccEEEEEeCCHHHHHHHHHHhCCCccC--CeEEEEEEe
Confidence 359999999999999999999999983 445555554
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=87.81 E-value=1.2 Score=42.44 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=62.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- |..
T Consensus 86 ~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~-----------g~~--------------------- 128 (177)
T 2f3j_A 86 ETGAKLLVSNLDFG-VSDADIQELFAEF----GTLKKAAVDYDRS-----------GRS--------------------- 128 (177)
T ss_dssp TTCEEEEEECCCSC-CCHHHHHHHHHHT----SCCSEEEECCCTT-----------SSC---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEECCC-----------CCE---------------------
Confidence 46789999999986 8899999999987 6788888854210 110
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (704)
-=||.|+|.+.+.|......++|..+. +..|-+.|...
T Consensus 129 -----------kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~V~~a~~ 166 (177)
T 2f3j_A 129 -----------LGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVAS 166 (177)
T ss_dssp -----------SCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCEEEEESS
T ss_pred -----------eeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEEecC
Confidence 137999999999999999999999775 45666666543
No 140
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.66 E-value=1.1 Score=44.47 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=61.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+.+...||..+|+.| |.|.+|.|.+..-+ .|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~---------tg----------------------- 251 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKE---------HS----------------------- 251 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC-----------------------------------
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCc---------CC-----------------------
Confidence 4678999999999989999999999988 78999988653110 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|.... .++|..+. +..|-+.|
T Consensus 252 ---------~~~g~afV~F~~~~~A~~A~-~l~g~~~~--g~~i~V~~ 287 (292)
T 2ghp_A 252 ---------FNNCCAFMVFENKDSAERAL-QMNRSLLG--NREISVSL 287 (292)
T ss_dssp ---------CCCEEEEEEESSHHHHHHHG-GGTTEEET--TEEEEEEE
T ss_pred ---------CCceEEEEEeCCHHHHHHHH-HhcCCEEC--CcEEEEEE
Confidence 11358999999999999999 99999875 34444443
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.64 E-value=0.96 Score=39.26 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCceeEEeccCCCccchhhHH---HHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhh
Q 005276 174 ETHRLAIVNMDWRHVKAVDLL---VILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEID 250 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~---vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d 250 (704)
..++|=|.||.| ++...||. .+|+.| |.|.+|.|-+..- .|
T Consensus 14 ~~~~l~V~nLp~-~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~----------~~--------------------- 57 (111)
T 2cpi_A 14 QKNLVFVVGLSQ-RLADPEVLKRPEYFGKF----GKIHKVVINNSTS----------YA--------------------- 57 (111)
T ss_dssp CSSCEEEEEECT-TTCCHHHHHSTTTTTTT----SCEEEEEEECCSS----------CC---------------------
T ss_pred CCCEEEEECCCC-CCCHHHHHHHHHHhhcc----CCEEEEEEecCCC----------cC---------------------
Confidence 578999999999 57888998 666655 7899999844210 00
Q ss_pred HHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 251 EEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 251 ~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..+.---||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 58 --------~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~~ 97 (111)
T 2cpi_A 58 --------GSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--GRTLKASL 97 (111)
T ss_dssp --------SSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEES
T ss_pred --------ccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--CEEEEEEe
Confidence 00112369999999999999999999999875 34444433
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=87.62 E-value=1.3 Score=42.41 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.|+ +.-.||..+|+.| |.|.+|.|.... |
T Consensus 102 ~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~~~i~~d~------------~------------------------ 140 (213)
T 4f02_A 102 GVGNIFIKNLDKS-IDNKALYDTFSAF----GNILSCKVVCDE------------N------------------------ 140 (213)
T ss_dssp CTTEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEEET------------T------------------------
T ss_pred ccccceECCcccc-cHHHHHHHHHhhc----CCeEEEEeeccC------------C------------------------
Confidence 5679999999994 8899999999988 789999985321 0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+- --||.|+|.+.+.|......++|+++.-
T Consensus 141 -------~~-~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 141 -------GS-KGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp -------EE-EEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred -------CC-ceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 01 2589999999999999999999998753
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=87.32 E-value=0.53 Score=39.84 Aligned_cols=63 Identities=10% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...+++|=|.||.| ++...||..+|+.| |.|.+|.|....- |
T Consensus 6 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g---------------------- 47 (102)
T 2xs2_A 6 KIMPNTVFVGGIDV-RMDETEIRSFFARY----GSVKEVKIITDRT-----------G---------------------- 47 (102)
T ss_dssp EEEEEEEEEECCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT-----------S----------------------
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhC----CCeEEEEEEECCC-----------C----------------------
Confidence 34678999999998 58999999999988 7899998865311 1
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHH
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYR 282 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ 282 (704)
.---||.|+|.+.+.|.....
T Consensus 48 ----------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 48 ----------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp ----------CEEEEEEEEESSCCCHHHHTT
T ss_pred ----------CccceEEEEECCHHHHHHHHh
Confidence 012489999999999999998
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=87.09 E-value=1.3 Score=35.94 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=52.6
Q ss_pred CceeEEeccCCCcc-----chhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhh
Q 005276 175 THRLAIVNMDWRHV-----KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (704)
Q Consensus 175 T~RLAvvNmDWD~I-----rA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~ 249 (704)
+++|=|-||.|+-- .-.||..+|+.| |.|.+|.|-+ + .|.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~-~-----------~g~~------------------ 46 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE-E-----------DGKT------------------ 46 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCC-B-----------TTBC------------------
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecC-C-----------CCcE------------------
Confidence 36889999998532 458899999876 7899987641 1 1111
Q ss_pred hHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
-=||.|+|.+.+.|......++|..+.-
T Consensus 47 --------------~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 47 --------------KGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp --------------CCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred --------------eEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 1389999999999999999999998753
No 145
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=87.01 E-value=1.2 Score=44.27 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=59.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.|+ |.-.||..+|+.| |.|.+|.|-.+
T Consensus 20 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~------------------------------------- 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTD-ITEEDFKRLFERY----GEPSEVFINRD------------------------------------- 57 (261)
T ss_dssp CGGGEEEEESCCTT-CCHHHHHHHTGGG----CCCSEEEEETT-------------------------------------
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhc----CCEEEEEEeCC-------------------------------------
Confidence 36789999999987 7899999999987 67889888321
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|+.+. +..|-++|.
T Consensus 58 -----------kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a 93 (261)
T 3sde_A 58 -----------RGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFA 93 (261)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred -----------CcEEEEEECCHHHHHHHHHHcCCcEEC--CceeEeeec
Confidence 028999999999999999999999885 344555544
No 146
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=86.99 E-value=1.3 Score=39.46 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.| | ++...||..+|+.| |.|.+|.|- ..
T Consensus 37 ~~~~~lfVgn--l-~~te~~L~~~F~~~----G~I~~v~i~----------------~~--------------------- 72 (121)
T 2bz2_A 37 RKGNTLYVYG--E-DMTPTLLRGAFSPF----GNIIDLSMD----------------PP--------------------- 72 (121)
T ss_dssp CCCCEEEEEC--S-SCCHHHHHHHHSTT----CCCSCEEEE----------------TT---------------------
T ss_pred CCCCEEEEcC--C-CCCHHHHHHHHHcc----CCEEEEEEe----------------CC---------------------
Confidence 3678999999 4 48999999999977 678888872 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-=||.|+|.+.+.|......++|..+. +..|-+.|
T Consensus 73 -----------kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~~ 107 (121)
T 2bz2_A 73 -----------RNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNI 107 (121)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCBCS--SCBCEEEE
T ss_pred -----------CCEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 027999999999999999999999874 44444444
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=86.96 E-value=2.1 Score=38.11 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=59.4
Q ss_pred ceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHH
Q 005276 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (704)
Q Consensus 176 ~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR 255 (704)
|+|-|-||.|+ +...||..+|+.| |.|.+|.|.+..- |..
T Consensus 1 R~l~V~nlp~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~-----------~~~------------------------ 40 (166)
T 3md3_A 1 RVLYVGNLDKA-ITEDILKQYFQVG----GPIANIKIMIDKN-----------NKN------------------------ 40 (166)
T ss_dssp CEEEEEEEETT-CCHHHHHHHHGGG----SCEEEEEEECCCC------------CC------------------------
T ss_pred CEEEECCCCCc-CCHHHHHHHHHhc----CCeEEEEEEECCC-----------CCC------------------------
Confidence 57899999976 7889999999987 6899999874321 111
Q ss_pred HHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 256 ~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
.=||.|+|.+.+.|......++|..+. +..|-+++.
T Consensus 41 --------~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~ 76 (166)
T 3md3_A 41 --------VNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWA 76 (166)
T ss_dssp --------EEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred --------CCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEc
Confidence 238999999999999999999999885 455555554
No 148
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.73 E-value=1.3 Score=37.19 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.|- .|. |.|.. | ..
T Consensus 17 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G----~v~-~~~~~---~-----------~~--------------------- 55 (97)
T 2e5j_A 17 PLAADVYVGNLPRD-ARVSDLKRALRELG----SVP-LRLTW---Q-----------GP--------------------- 55 (97)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHHHTT----CCC-SEEEE---E-----------TT---------------------
T ss_pred CCCCEEEEeCCCCc-CcHHHHHHHHHhcC----CEE-EEEEc---C-----------CC---------------------
Confidence 46789999999986 78899999999884 343 33321 1 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
-=||.|+|.+.+.|......++|..+.-
T Consensus 56 -----------~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 56 -----------RRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp -----------TTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred -----------CcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 1279999999999999999999998753
No 149
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.60 E-value=0.89 Score=38.05 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|..|.|.. +.. .
T Consensus 13 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~v~~~~~~~--------------------~~~-------~------- 53 (98)
T 2cqp_A 13 PGPTIIKVQNMPFT-VSIDEILDFFYGY----QVIPGSVCLK--------------------YNE-------K------- 53 (98)
T ss_dssp CSSEEEEEESCCTT-CCHHHHHHHTTTS----CCCTTTCEEE--------------------ECS-------S-------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----CCccceEEEE--------------------ECC-------C-------
Confidence 46789999999997 7889999999877 3333222210 000 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
. ..-=||.|+|.+.+.|......++|..+.- ..|-+++
T Consensus 54 -------g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~ 91 (98)
T 2cqp_A 54 -------G-MPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLVL 91 (98)
T ss_dssp -------S-CEEEEEEEEESCHHHHHHHHHHTTTCEETT--EECEEEE
T ss_pred -------C-CeeeEEEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEE
Confidence 0 113589999999999999999999998764 4444444
No 150
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=86.30 E-value=2.6 Score=39.38 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=58.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCC--ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG--~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
..++|=|.||.|+ +...||..+|+.| | .|.+|.|..-.. .|
T Consensus 54 ~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~v~~v~i~~d~~----------tg---------------------- 96 (156)
T 3n9u_C 54 RRAAVYVGSFSWW-TTDQQLIQVIRSI----GVYDVVELKFAENRA----------NG---------------------- 96 (156)
T ss_dssp --CEEEEECCCTT-CCHHHHHHHHHHT----TCCCEEEEEEEECTT----------TC----------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHH----CCccEEEEEEEecCC----------CC----------------------
Confidence 5689999999996 7899999999987 5 799998863210 01
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
+. -=||.|+|.+.+.|......++|.++.- ..|-++
T Consensus 97 ---------~s-kGfaFV~f~~~~~A~~Ai~~lng~~~~G--r~l~V~ 132 (156)
T 3n9u_C 97 ---------QS-KGYAEVVVASENSVHKLLELLPGKVLNG--EKVDVR 132 (156)
T ss_dssp ---------CE-EEEEEEEESCHHHHHHHHHHSTTCEETT--EECEEE
T ss_pred ---------cc-ceEEEEEECCHHHHHHHHHHcCCCEECC--eEeEEE
Confidence 11 2389999999999999999999998753 444443
No 151
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=86.12 E-value=3.8 Score=33.38 Aligned_cols=69 Identities=10% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 9 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 50 (87)
T 3s7r_A 9 EDAGKMFVGGLSWD-TSKKDLKDYFTKF----GEVVDCTIKMDPN----------TG----------------------- 50 (87)
T ss_dssp SCTTEEEEECCCTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEeecCC----------CC-----------------------
Confidence 57899999999986 6999999999877 7899999864310 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
..-=||.|+|.+.+.|...... +|.++
T Consensus 51 ---------~~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 51 ---------RSRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp ---------CEEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred ---------ccccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 0123899999999999999855 66543
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.05 E-value=0.8 Score=39.97 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCce-EEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQI-LSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I-~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...++|=|-||.|+ +...||..+|+.| |.| .+|.|....- |
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g~v~~~v~i~~d~~-----------g---------------------- 54 (114)
T 2cpy_A 13 SAKVCAHITNIPFS-ITKMDVLQFLEGI----PVDENAVHVLVDNN-----------G---------------------- 54 (114)
T ss_dssp SCCCEEEEESCCTT-SCHHHHHHHTTTS----CCCSTTEEECCCTT-----------S----------------------
T ss_pred CCccEEEEeCcCCc-CCHHHHHHHHHhC----CCcCCeEEEEECCC-----------C----------------------
Confidence 35788999999997 8999999999988 677 6777632110 1
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+. -=||.|+|.+.+.|...... +|..+.-
T Consensus 55 ---------~~-~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 55 ---------QG-LGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp ---------SC-SSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred ---------Cc-ceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 00 23799999999999999887 9977753
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.03 E-value=4.6 Score=33.46 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=60.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEE-EecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVA-VYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~-IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
..+++|=|-||.|+ +...||..+|+.| |.|.+|. |.. + |. .
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~i~~-~-------------~~-------------~------ 54 (96)
T 2e44_A 13 QRIRKLQIRNIPPH-LQWEVLDSLLVQY----GVVESCEQVNT-D-------------SE-------------T------ 54 (96)
T ss_dssp CSCCCEEEEEECSS-SCHHHHHHHHHHH----SCEEEEEEECC-S-------------SS-------------S------
T ss_pred CCCCEEEEEcCCCC-CCHHHHHHHHHhc----CCeEEEEEeec-C-------------CC-------------C------
Confidence 36789999999995 8899999999987 6788884 521 0 00 0
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (704)
.+ |.|+|.+.+.|......++|..+. +..|-+.|..+
T Consensus 55 -----------~~--afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~ 91 (96)
T 2e44_A 55 -----------AV--VNVTYSSKDQARQALDKLNGFQLE--NFTLKVAYIPD 91 (96)
T ss_dssp -----------EE--EEEEESSHHHHHHHHHHHTTCBCS--SCBCEEEECCC
T ss_pred -----------CE--EEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEcCc
Confidence 01 999999999999999999999886 56666666543
No 154
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=85.78 E-value=1.8 Score=43.96 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCceeEEeccCCCc--------cchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRH--------VKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~--------IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~ 244 (704)
..++.|-|-||.|+- +.-.+|..+|+.| |.|.+|.|-++ .
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~~------------k---------------- 179 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVES------------K---------------- 179 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEGG------------G----------------
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEECC------------C----------------
Confidence 467899999999983 4688999999988 89999999742 0
Q ss_pred CChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 245 ~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
=||.|+|.+.+.|......++|..+
T Consensus 180 --------------------G~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 180 --------------------NCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp --------------------TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred --------------------CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 1899999999999999999999999
No 155
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=85.55 E-value=0.9 Score=37.42 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=55.9
Q ss_pred ceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHH
Q 005276 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (704)
Q Consensus 176 ~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR 255 (704)
++|=|.||.| ++...||..+|+.| |.|.+|.|-.... .|
T Consensus 2 ~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~-------------------------- 40 (90)
T 2ki2_A 2 RNIYVGNLVY-SATSEQVKELFSQF----GKVFNVKLIYDRE----------TK-------------------------- 40 (90)
T ss_dssp EEEEEEEECT-TSSHHHHTTTHHHH----TCCSEEEECCCSS----------SC--------------------------
T ss_pred cEEEECCCCC-CCCHHHHHHHHHhc----CCEEEEEEEEcCC----------CC--------------------------
Confidence 5788999999 58899999999987 6788888743210 00
Q ss_pred HHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 256 ~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+ |......++|..+. +..|-+++
T Consensus 41 ------~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~ 76 (90)
T 2ki2_A 41 ------KPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTE 76 (90)
T ss_dssp ------CCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEE
T ss_pred ------CcceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEE
Confidence 01248999999999 99999999999876 34444443
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=85.45 E-value=1.2 Score=38.45 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.|=+.| .|.+|.|....-|+
T Consensus 9 ~~~~~l~V~nLp~~-~te~~l~~~F~~~g~~~-~v~~v~i~~~~~g~--------------------------------- 53 (107)
T 2lmi_A 9 DDVFLIRAQGLPWS-CTMEDVLNFFSDCRIRN-GENGIHFLLNRDGK--------------------------------- 53 (107)
T ss_dssp SSCCEEEEECCCSS-CCSHHHHHHTTTSCBTT-TTTTEECCCCTTST---------------------------------
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHhcCCcC-CcceEEEEECCCCC---------------------------------
Confidence 46789999999998 78999999999886543 25666653211111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
. -=||.|+|.+.+.|..... ++|..+.
T Consensus 54 ---------~-~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 54 ---------R-RGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp ---------T-CSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred ---------E-eeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 1 1379999999999999988 8987764
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=85.43 E-value=3.6 Score=37.84 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|..... .|
T Consensus 11 ~~~~~l~V~nLp~-~~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 52 (196)
T 1l3k_A 11 EQLRKLFIGGLSF-ETTDESLRSHFEQW----GTLTDCVVMRDPN----------TK----------------------- 52 (196)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhC----CCEEEEEEEEcCC----------CC-----------------------
Confidence 5789999999999 58999999999988 7899998865321 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.-.=||.|+|.+.+.|...... +|..+.
T Consensus 53 ---------~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 53 ---------RSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred ---------CccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 1134899999999999999876 776653
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=84.88 E-value=2.6 Score=37.87 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCC----ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG----QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG----~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.++++|-|-||.|+ +.-.||..+|+.|-+... .|..|.+.. .|..
T Consensus 43 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-------------~g~~----------------- 91 (143)
T 3egn_A 43 EPNCRIYVKNLAKH-VQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-------------EGRM----------------- 91 (143)
T ss_dssp SCCSEEEEEEECTT-CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-------------ETTT-----------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcccccccceeeEEecc-------------CCCc-----------------
Confidence 58899999999995 899999999998843221 112222221 1111
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
.=||.|+|.+.+.|......++|..+. +..|-+.
T Consensus 92 ---------------~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~ 125 (143)
T 3egn_A 92 ---------------KGQAFIGLPNEKAAAKALKEANGYVLF--GKPMVVQ 125 (143)
T ss_dssp ---------------EEEEEEECSSHHHHHHHHHHHTTBEET--TEECEEE
T ss_pred ---------------ccEEEEEeCCHHHHHHHHHHhCCCEeC--CcEEEEE
Confidence 349999999999999999999999885 3444443
No 159
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=84.83 E-value=2.2 Score=42.44 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...+++|-|-||.| ++...||..+|+.| |.|.+|.|.+..= |.
T Consensus 38 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------~~--------------------- 80 (292)
T 2ghp_A 38 NRELTTVLVKNLPK-SYNQNKVYKYFKHC----GPIIHVDVADSLK-----------KN--------------------- 80 (292)
T ss_dssp ----CEEEEEEECT-TCCHHHHHHHHGGG----SCEEEEEEEECTT-----------SS---------------------
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhc----CCeEEEEEEECCC-----------CC---------------------
Confidence 35789999999999 58999999999987 7899999976431 10
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
-=||.|+|.+.+.|.... +++|+.+.-
T Consensus 81 ------------~g~afV~f~~~~~A~~A~-~~~~~~~~g 107 (292)
T 2ghp_A 81 ------------FRFARIEFARYDGALAAI-TKTHKVVGQ 107 (292)
T ss_dssp ------------SEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred ------------cEEEEEEECCHHHHHHHH-HhCCcEeCC
Confidence 138999999999999999 589988754
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=84.53 E-value=2.5 Score=41.87 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=56.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCC--ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG--~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
.+.+|-|-||.|+ |.-.||..+|+.| | .|.+|.|..--. .
T Consensus 67 ~~~~lfVgnL~~~-~te~~L~~~F~~~----G~~~v~~v~i~~d~~----------t----------------------- 108 (229)
T 3q2s_C 67 KRIALYIGNLTWW-TTDEDLTEAVHSL----GVNDILEIKFFENRA----------N----------------------- 108 (229)
T ss_dssp --CEEEEESCCTT-CCHHHHHHHHHTT----TCCCEEEEEEEECTT----------T-----------------------
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHHH----CCcceEEEEEEecCC----------C-----------------------
Confidence 6778999999996 7889999999987 5 899998863110 0
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERS 292 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~S 292 (704)
.+. -=||.|+|.+.+.|......++|.+|.-.
T Consensus 109 --------g~s-kGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 109 --------GQS-KGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --------CCE-EEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred --------Ccc-ceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 012 24899999999999999999999988643
No 161
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=84.43 E-value=1.6 Score=34.56 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=50.0
Q ss_pred eeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHHH
Q 005276 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRA 256 (704)
Q Consensus 177 RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR~ 256 (704)
||=|.||.|+ +...||..+|+.| |.|.+|.|....- .|
T Consensus 1 ~l~v~nlp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~--------------------------- 38 (75)
T 2mss_A 1 KIFVGGLSVN-TTVEDVKHYFEQF----GKVDDAMLMFDKT----------TN--------------------------- 38 (75)
T ss_dssp CEEEECCCSS-CCHHHHHHHHHTT----SCCSEECCCBCSS----------ST---------------------------
T ss_pred CEEEecCCCC-CCHHHHHHHHHhc----CCEEEEEEEecCC----------CC---------------------------
Confidence 5779999995 8999999999987 6788877643210 00
Q ss_pred HHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 257 YEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 257 YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
..-=||.|+|.+.+.|..+.. ++|..+.
T Consensus 39 -----~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 39 -----RHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp -----TSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred -----CcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 012389999999999999986 8988875
No 162
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.54 E-value=1.3 Score=39.16 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.|=+.+ .|.+|.|....-|
T Consensus 15 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~~~-~v~~v~i~~~~~g---------------------------------- 58 (118)
T 2db1_A 15 GEGYVVKLRGLPWS-CSIEDVQNFLSDCTIHD-GVAGVHFIYTREG---------------------------------- 58 (118)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHTTTSCBTT-GGGGEEEEECSSS----------------------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCcc-CceeEEEEECCCC----------------------------------
Confidence 46788999999998 78899999999875543 2666666321111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
|. -=||.|+|.+.+.|.+... ++|..+.-
T Consensus 59 --------~~-~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 59 --------RQ-SGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp --------CE-EEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred --------CC-CeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 11 2489999999999999999 99988754
No 163
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.42 E-value=2.4 Score=36.60 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||.-+|+.| |.|.+|.|....- .|
T Consensus 25 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 66 (116)
T 1x4b_A 25 EQFRKLFIGGLSFE-TTEESLRNYYEQW----GKLTDCVVMRDPA----------SK----------------------- 66 (116)
T ss_dssp HHHTEEEEECCTTC-CCHHHHHHHHTSS----CCCSEEEEECCTT----------TS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEEECCC----------CC-----------------------
Confidence 46799999999996 8999999999877 6788888864310 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.--=||.|+|.+.+.|...... +|..+.-
T Consensus 67 ---------~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 67 ---------RSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp ---------SCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred ---------CcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 0123899999999999999888 8887753
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.39 E-value=2.5 Score=36.77 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.| |.|. |.|....- .++.
T Consensus 6 ~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~-~~~~~~~~----------~~~~--------------------- 48 (114)
T 2dnl_A 6 SGSRKVFVGGLPPD-IDEDEITASFRRF----GPLV-VDWPHKAE----------SKSY--------------------- 48 (114)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHTTTT----CCCC-EECTTSSS----------SCCC---------------------
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCEE-EEEeecCC----------CCCC---------------------
Confidence 46799999999986 7899999999977 5555 43321100 0000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhc---Ccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRAC---DGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ec---DG~E~E~ 291 (704)
.+. -=||.|+|.+.+.|......| +|..+.-
T Consensus 49 -------g~~-~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 49 -------FPP-KGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp -------SCT-TSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred -------CCc-ccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 011 248999999999999999888 8887643
No 165
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.29 E-value=1.8 Score=36.03 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.| |.|..| . ..|.
T Consensus 14 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~----g~v~~~--~-------------~~~~---------------------- 51 (96)
T 1fjc_A 14 RAARTLLAKNLSFN-ITEDELKEVFEDA----LEIRLV--S-------------QDGK---------------------- 51 (96)
T ss_dssp TGGGEEEEESCCSS-CCHHHHHHHHCSE----EEECCE--E-------------ETTE----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhC----CcEEEe--C-------------CCCC----------------------
Confidence 47899999999987 6889999999987 455443 0 0111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.-=||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 52 ----------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 87 (96)
T 1fjc_A 52 ----------SKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYY 87 (96)
T ss_dssp ----------EEEEEEEEESSHHHHHHHHHHTTEEEET--TEEEEEEE
T ss_pred ----------cceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 1238999999999999999999998875 34444443
No 166
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=83.28 E-value=3.5 Score=37.44 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=60.5
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +.-.||.-+|+.| |.|.+|.|...-. .|
T Consensus 68 ~~~~~l~v~nl~~~-~~~~~l~~~F~~~----G~v~~~~i~~~~~----------~g----------------------- 109 (158)
T 2kn4_A 68 EGMTSLKVDNLTYR-TSPDTLRRVFEKY----GRVGDVYIPRDRY----------TK----------------------- 109 (158)
T ss_dssp CBCCEEEEESCCTT-CCHHHHHHHHHHH----SCEEEEECCCCSS----------CT-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEeecCC----------CC-----------------------
Confidence 46889999999997 8999999999988 6898888743110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
+. --||.|+|.+.+.|......++|..+. +..|-++|
T Consensus 110 --------~~-~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 146 (158)
T 2kn4_A 110 --------ES-RGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELRVQM 146 (158)
T ss_dssp --------TS-CCEEEEEESBHHHHHHHHHHSTTEESS--SSEEEEEE
T ss_pred --------cc-ceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 01 238999999999999999999998875 34454444
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=83.13 E-value=2.4 Score=41.94 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||.-+|+.| | |.+|.| |+. -
T Consensus 20 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G-i~~~~~----------------~~~-------------~------- 57 (284)
T 3smz_A 20 RNRRKILIRGLPGD-VTNQEVHDLLSDY----E-LKYCFV----------------DKY-------------K------- 57 (284)
T ss_dssp HCCCEEEEECCCTT-CCHHHHHHHTTTS----C-EEEEEE----------------ETT-------------T-------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----C-CEEEEE----------------ecC-------------C-------
Confidence 36789999999986 8899999999998 5 999988 221 0
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
=||.|+|.+.+.|......++|..+.- ..|-+.+
T Consensus 58 ------------g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~ 91 (284)
T 3smz_A 58 ------------GTAFVTLLNGEQAEAAINAFHQSRLRE--RELSVQL 91 (284)
T ss_dssp ------------TEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred ------------CEEEEEeCCHHHHHHHHHHcCCCeeCC--eEEEEEe
Confidence 189999999999999999999998763 4444444
No 168
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.96 E-value=3.7 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|.||.|+ +...||..+|+.|+ .|.|..- .. .+
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~-------~~~~~~~--------------------~~-------~~------ 51 (102)
T 2fc8_A 13 QPSKTLFVKGLSED-TTEETLKESFDGSV-------RARIVTD--------------------RE-------TG------ 51 (102)
T ss_dssp CCCSSEEEECCCTT-CCHHHHHHTSTTCS-------EEEEEEC--------------------SS-------SC------
T ss_pred CCCCEEEEeCCCCc-cCHHHHHHHhcCCe-------EEEEEec--------------------CC-------CC------
Confidence 47899999999996 89999999998651 2332210 00 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.--=||.|+|.+.+.|......++|+.+.- ..|-++|
T Consensus 52 ---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~ 88 (102)
T 2fc8_A 52 ---------SSKGFGFVDFNSEEDAKAAKEAMEDGEIDG--NKVTLDW 88 (102)
T ss_dssp ---------SEEEEEEEECSSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred ---------CcCcEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 113489999999999999999999988763 4444444
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=82.94 E-value=4.9 Score=36.97 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|.+|.|.+..- .|
T Consensus 102 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~g----------------------- 143 (196)
T 1l3k_A 102 LTVKKIFVGGIKED-TEEHHLRDYFEQY----GKIEVIEIMTDRG----------SG----------------------- 143 (196)
T ss_dssp -CCSEEEEECCTTT-CCHHHHHHHHTTT----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcC----CCeEEEEEeecCC----------CC-----------------------
Confidence 36789999999996 8999999999977 7899999875310 01
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
..--||.|+|.+.+.|...... +|..+. +..|-+++
T Consensus 144 ---------~~~g~afV~F~~~~~A~~A~~~-~~~~~~--G~~i~v~~ 179 (196)
T 1l3k_A 144 ---------KKRGFAFVTFDDHDSVDKIVIQ-KYHTVN--GHNCEVRK 179 (196)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHC-SCCEET--TEECEEEE
T ss_pred ---------CccceEEEEECCHHHHHHHHHh-CCcEEC--CEEEEEEe
Confidence 1124899999999999998876 676554 34455554
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=82.84 E-value=2 Score=39.09 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|-||.|+ +...||..+|+.| |.|..| . ..|.+
T Consensus 97 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----g~v~~~----~-----------~~~~~--------------------- 135 (175)
T 1fje_B 97 RAARTLLAKNLSFN-ITEDELKEVFEDA----LEIRLV----S-----------QDGKS--------------------- 135 (175)
T ss_dssp GGGGEEEEESCCSS-CCHHHHHHHCTTC----SEEEEE----C-----------SSSSC---------------------
T ss_pred ccCCEEEEeCCCCC-CCHHHHHHHHHhc----CeEEEe----c-----------CCCCC---------------------
Confidence 36789999999986 8899999999986 566554 0 11111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 136 -----------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a 171 (175)
T 1fje_B 136 -----------KGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYYT 171 (175)
T ss_dssp -----------CSEEEEECSSHHHHHHHHHHHTEEEET--TEEEEEEEC
T ss_pred -----------ceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEec
Confidence 238999999999999999999998876 355555553
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=82.59 E-value=3.4 Score=37.04 Aligned_cols=119 Identities=13% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecC------------hhhHHhHHHHHhhCCccccCC-----
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPS------------EFGIQRMKEEEVRGPVGLFDS----- 236 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPS------------eFGkeRM~~Ee~~GP~~l~~~----- 236 (704)
.+++|=|-||.|+ +...||..+|+.| |.|.+|.|... +|.-..-+...+.....|...
T Consensus 2 ~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWD-TTEDNLREYFGKY----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTT-CCHHHHHHHHTTT----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCE
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhC----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccc
Confidence 5789999999995 7999999999987 78999998765 233344444444432211100
Q ss_pred -CCCCCC-C--------CCChhhhHHHHHHH-----Hhhccce----------eEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 237 -QNENSD-D--------EDNDEIDEEKLRAY-----EKSRLRY----------YYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 237 -~~~~~~-~--------~~~~e~d~e~LR~Y-----Ql~RLRY----------YYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
...... . .-......+.|+.+ .+..++. -||.|+|.+.+.|..... .+|..+.-
T Consensus 77 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 77 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp ECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 000000 0 00011334445544 2223332 299999999999999987 78877753
Q ss_pred ccccccccc
Q 005276 292 SSNKLDLRF 300 (704)
Q Consensus 292 San~lDLRF 300 (704)
..|-++|
T Consensus 156 --~~i~V~~ 162 (167)
T 2cjk_A 156 --RKIEIKR 162 (167)
T ss_dssp --SCEEEEE
T ss_pred --eEEEEee
Confidence 4444433
No 172
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=82.25 E-value=1.6 Score=37.22 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCceeEEeccCC-----CccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 174 ETHRLAIVNMDW-----RHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 174 ~T~RLAvvNmDW-----D~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.++.|=|-||.| -++.-.+|..+|+.| |.|.+|.|-.... .|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~----------tg------------------- 51 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEA----------TG------------------- 51 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETT----------TT-------------------
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCC----------CC-------------------
Confidence 567899999998 166778899999877 7899988743211 01
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
..-=||.|+|.+.+.|......++|..+.-
T Consensus 52 -------------~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 52 -------------KTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp -------------EECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred -------------ccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 012389999999999999999999998864
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.89 E-value=3.4 Score=34.63 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=52.3
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++..|=|.||.|+ +...||..+|+.| |.|.+|.|-.- +.
T Consensus 9 ~~~~~l~V~~Lp~~-~te~~L~~~F~~~----G~i~~v~i~~~--------------sr--------------------- 48 (89)
T 3d2w_A 9 HHGSKVFVGRCTED-MTAEELQQFFCQY----GEVVDVFIPKP--------------FR--------------------- 48 (89)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHTTT----SCEEEEECCSS--------------CC---------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhcc----CCEEEEEEeeC--------------CC---------------------
Confidence 47889999999995 7899999999987 78999987430 11
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDL 298 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDL 298 (704)
=||.|+|.+.+.|. .++|..+.-.+..+.+
T Consensus 49 ------------GfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 49 ------------AFAFVTFADDKVAQ----SLCGEDLIIKGISVHI 78 (89)
T ss_dssp ------------SEEEEEESCHHHHH----HHTTCEEEETTEEEEE
T ss_pred ------------CEEEEEECCHHHHH----HHcCCCcccCCEEEEE
Confidence 28999999999998 4677755544444443
No 174
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=81.46 E-value=4.3 Score=35.09 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|-|.||.| ++...||..+|+.| |.|.+|.|...-. .|-
T Consensus 23 ~~~~~lfV~nLp~-~~te~~L~~~F~~~----G~i~~v~i~~~~~----------tg~---------------------- 65 (109)
T 2rs2_A 23 SSGCKMFIGGLSW-QTTQEGLREYFGQF----GEVKECLVMRDPL----------TKR---------------------- 65 (109)
T ss_dssp ---CCEEEESCCT-TCCHHHHHHHHTTT----SCEEEEEECCCTT----------TCC----------------------
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHcc----CCeEEEEEEECCC----------CCC----------------------
Confidence 4788999999998 58999999999987 7899998854210 010
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLR 299 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLR 299 (704)
---||.|+|.+.+.|......+ |..+ .+..|-++
T Consensus 66 ----------~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V~ 99 (109)
T 2rs2_A 66 ----------SRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDPK 99 (109)
T ss_dssp ----------CTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEEE
T ss_pred ----------cCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEEE
Confidence 0238999999999999998875 5433 33444443
No 175
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=81.25 E-value=4.7 Score=38.60 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=56.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.++++|=|-||.|+ +.-.+|..+|+.| |.|.+|.|..--. .|
T Consensus 13 ~p~~tlfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg----------------------- 54 (213)
T 4f02_A 13 YPMASLYVGDLHPD-VTEAMLYEKFSPA----GPILSIRVCRDMI----------TR----------------------- 54 (213)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEECTT----------TC-----------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhh----CCEEEEEEecccC----------CC-----------------------
Confidence 37789999999996 8899999999988 7899999853110 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
.-.=||.|+|.+.+.|......++|..+.-
T Consensus 55 ---------~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 55 ---------RSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp ---------CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------CccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 113589999999999999999999987653
No 176
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.83 E-value=2.9 Score=35.72 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEE-EEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS-VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~s-V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
...++|=|.||.|+ +...||..+|+.| |.|.. |.|....- |
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~v~~~v~i~~~~~-----------g---------------------- 54 (104)
T 1wg5_A 13 ANDGFVRLRGLPFG-CSKEEIVQFFSGL----EIVPNGMTLPVDFQ-----------G---------------------- 54 (104)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHTTTC----CEEEEEEECCBCSS-----------S----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhc----CCcceeEEEEECCC-----------C----------------------
Confidence 36789999999996 6889999999876 56765 65522110 1
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
|. -=||.|+|.+.+.|...... +|..+..
T Consensus 55 ---------~~-~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 55 ---------RS-TGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp ---------CB-CSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred ---------Cc-ceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 11 13899999999999999987 8887654
No 177
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=81.83 E-value=0.32 Score=42.41 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=56.0
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEE--------EEEecChhhHHhHHHHHhhCCccccCCCCCCCCCC
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--------VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDE 244 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~s--------V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~ 244 (704)
..+++|=|.||.|+ +...||..+|+.| |.|.+ |.|.... .
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~--------------------~------- 52 (116)
T 2lcw_A 5 SDNNTIFVQGLGEN-VTIESVADYFKQI----GIIKTNKKTGQPMINLYTDR--------------------E------- 52 (116)
Confidence 46789999999987 7888999999877 45655 3332110 0
Q ss_pred CChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 245 DNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 245 ~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
-. ...-||.|+|.+.+.|......++|..+. +..|-+++
T Consensus 53 --------------~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 91 (116)
T 2lcw_A 53 --------------TG-KLKGEATVSFDDPPSAKAAIDWFDGKEFS--GNPIKVSF 91 (116)
Confidence 00 11248999999999999999999998876 44444443
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.11 E-value=1.6 Score=39.58 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=56.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+.+|=|.||.|+ +.-.||..+|+.|.+..|.|.+|.|-.-.-|
T Consensus 21 ~~~~~v~V~nLp~~-~te~dl~~~F~~~g~v~g~v~~v~i~~d~~g---------------------------------- 65 (123)
T 2dha_A 21 ENQVIVRMRGLPFT-ATAEEVVAFFGQHCPITGGKEGILFVTYPDG---------------------------------- 65 (123)
T ss_dssp CSCCEEEECSCCTT-CCHHHHHHHHHTTSCCTTGGGGEEEEECTTS----------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCccCCcceEEEEECCCC----------------------------------
Confidence 46789999999998 8999999999999887667777776421111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
|. -=||.|+|.+.+.|...... +|..+.
T Consensus 66 --------r~-~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 66 --------RP-TGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp --------CE-EEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred --------CE-eeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 11 12899999999999998886 887664
No 179
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=79.11 E-value=2.2 Score=35.26 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|=|-||.| ++...||..+|+.| |.|.+|.|.. +..
T Consensus 14 ~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~~~~~~--------------------~~~---------------- 52 (95)
T 2ek1_A 14 GPTVIKVQNMPF-TVSIDEILDFFYGY----QVIPGSVCLK--------------------YNE---------------- 52 (95)
T ss_dssp -CEEEEEECCCT-TCCHHHHHHHTTTS----CBCTTCCEEE--------------------ECT----------------
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhc----CCccceEEEE--------------------eCC----------------
Confidence 568999999999 58999999999876 3343333321 000
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
...--=||.|+|.+.+.|......++|..+.-
T Consensus 53 ------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 53 ------KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp ------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ------CCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 00113589999999999999999999988753
No 180
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=77.40 E-value=4.9 Score=33.24 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=50.6
Q ss_pred eeEEeccCCCccchhhHHHHHhcccCCCC--ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDG--QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 177 RLAvvNmDWD~IrA~DL~vlf~SF~P~gG--~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
.|=|-||.|+ +.-.||..+|+.| | .|.+|.|..-.. .|
T Consensus 3 ~l~V~nL~~~-~t~~~l~~~F~~~----G~~~v~~v~i~~~~~----------~g------------------------- 42 (90)
T 3p5t_L 3 ALYIGNLTWW-TTDEDLTEAVHSL----GVNDILEIKFFENRA----------NG------------------------- 42 (90)
T ss_dssp -CEEESCCTT-CCHHHHHHHHHTT----TCCCCCCEEEEECTT----------TC-------------------------
T ss_pred EEEEeCCCCC-CCHHHHHHHHHHh----CCCceEEEEEEecCC----------CC-------------------------
Confidence 4678999996 7889999999877 5 677887753110 01
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+. -=||.|+|.+.+.|......++|.++.-
T Consensus 43 ------~~-kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 43 ------QS-KGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ------CE-EEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred ------cc-CcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 11 2489999999999999999999998753
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=76.01 E-value=3.7 Score=40.62 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+++|-|.||.|. +...||..+|+.| |.|.+|.|.+..- |.+
T Consensus 95 ~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~~---------------------- 136 (261)
T 3sde_A 95 HGAALTVKNLSPV-VSNELLEQAFSQF----GPVEKAVVVVDDR-----------GRA---------------------- 136 (261)
T ss_dssp CSSEEEEESCCTT-CCHHHHHHHHGGG----SCEEEEEEEEETT-----------SCE----------------------
T ss_pred cCCcccccCCCCC-CCHHHHHHHHHhc----CCeEEEEeeeCCC-----------CCc----------------------
Confidence 4679999999975 6889999999877 7899999876321 211
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
--||.|+|.+.+.|......|+|..|-
T Consensus 137 ----------~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 137 ----------TGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp ----------EEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred ----------CcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 248999999999999999999665544
No 182
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=75.92 E-value=2.7 Score=37.51 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCCCceeEEeccCCCccchhhHHHHHhcccCCCCceEE--EEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhh
Q 005276 172 DNETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILS--VAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (704)
Q Consensus 172 ~~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~s--V~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~ 249 (704)
+..+++|-|-||.|+ +.-.||.-+|+.| |.|.. |.|..- ...
T Consensus 20 ~~~~~~lfV~nL~~~-~te~~L~~~F~~~----G~v~~~~v~i~~d--------------------~~t----------- 63 (131)
T 2m2b_A 20 ENANDTIILRNLNPH-STMDSILGALAPY----AVLSSSNVRVIKD--------------------KQT----------- 63 (131)
T ss_dssp SCCCCEEEECSCCTT-CCSHHHHHHHGGG----CCCCTTTEECCBC--------------------SSS-----------
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHHh----CCcceeeEEEEEc--------------------CCC-----------
Confidence 457889999999996 6889999999977 45544 444211 000
Q ss_pred hHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcc----ccccccccccccc
Q 005276 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGV----EFERSSNKLDLRF 300 (704)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~----E~E~San~lDLRF 300 (704)
.+. -=||.|+|.+. .|......++|. ++. +..|-++|
T Consensus 64 ----------g~~-rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--gr~l~V~~ 104 (131)
T 2m2b_A 64 ----------QLN-RGFAFIQLSTI-EAAQLLQILQALHPPLTID--GKTINVEF 104 (131)
T ss_dssp ----------SSB-CSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--GCCCCCEE
T ss_pred ----------CCc-ceEEEEEECCH-HHHHHHHHhcCCCCCccCC--CEEEEEEE
Confidence 011 24899999999 999999999998 665 34444443
No 183
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.84 E-value=4.6 Score=31.86 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=49.7
Q ss_pred ceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHH
Q 005276 176 HRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLR 255 (704)
Q Consensus 176 ~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR 255 (704)
++|=|.||.|+ +...||..+|+.| |.|.+|.|.+..- .|.
T Consensus 1 ~~l~v~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~----------~~~------------------------- 40 (77)
T 1uaw_A 1 CKMFIGGLSWQ-TTQEGLREYFGQF----GEVKECLVMRDPL----------TKR------------------------- 40 (77)
T ss_dssp CCEEEESCCSS-CCSHHHHHHHTTT----SCCCCEEEECCCC----------SSS-------------------------
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhc----CCEEEEEEecCCC----------CCC-------------------------
Confidence 47889999985 8899999999987 6788888754210 010
Q ss_pred HHHhhccceeEEEEEeCCHHHHHHHHHhcCcccc
Q 005276 256 AYEKSRLRYYYAVVECDSSATADYLYRACDGVEF 289 (704)
Q Consensus 256 ~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~ 289 (704)
--=||.|+|.+.+.|......++ ..+
T Consensus 41 -------~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 41 -------SRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp -------CSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred -------cCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 02389999999999999999877 444
No 184
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=74.64 E-value=9.6 Score=33.19 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCceeEEecc--CCCcc-------chhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCC
Q 005276 172 DNETHRLAIVNM--DWRHV-------KAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSD 242 (704)
Q Consensus 172 ~~~T~RLAvvNm--DWD~I-------rA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~ 242 (704)
+.+|+=|-|.|| -++-+ --.||...|+.| |.|.+|.|.--.-| ..|++
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~--------~~~~~----------- 58 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDG--------VEVPG----------- 58 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTT--------BCCTT-----------
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCC--------CCcCC-----------
Confidence 458889999999 22222 235777888765 89999998532211 00111
Q ss_pred CCCChhhhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccC
Q 005276 243 DEDNDEIDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIP 302 (704)
Q Consensus 243 ~~~~~e~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVP 302 (704)
.=||-|+|.+.+.|..-..+++|..|. +..|=..|.|
T Consensus 59 ---------------------~G~~fV~f~~~~~A~~Ai~~lnG~~f~--GR~i~v~~~~ 95 (105)
T 3v4m_A 59 ---------------------CGKIFVEFTSVFDCQKAMQGLTGRKFA--NRVVVTKYCD 95 (105)
T ss_dssp ---------------------TTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEEC
T ss_pred ---------------------cEEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEEEeC
Confidence 228999999999999999999999985 4455555554
No 185
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.25 E-value=4.4 Score=35.77 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
.+.+|=|.||.|+ +.-.||..+|+.| . |.+|.|-.-.-|
T Consensus 15 ~~~~v~V~nLp~~-~te~dl~~~F~~~-~----v~~v~i~~d~~g----------------------------------- 53 (109)
T 2dnn_A 15 DDLYVSVHGMPFS-AMENDVRDFFHGL-R----VDAVHLLKDHVG----------------------------------- 53 (109)
T ss_dssp HHHEEEEECCCSS-CCHHHHHHHTTTS-C----CCEEEECCCTTC-----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHhccC-C----eeEEEEEECCCC-----------------------------------
Confidence 5679999999998 8999999999988 3 567776321111
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
|.| =||.|+|.+.+.|.... +++|.++.-
T Consensus 54 -------~~~-G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 54 -------RNN-GNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp -------CCC-SEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred -------CCC-eEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 111 28999999999999888 799988764
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=71.88 E-value=15 Score=32.09 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=57.6
Q ss_pred CCCceeEEeccC----CCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChh
Q 005276 173 NETHRLAIVNMD----WRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDE 248 (704)
Q Consensus 173 ~~T~RLAvvNmD----WD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e 248 (704)
.+|+-|-|.||- |+.-.-.||.-+|+-| |.|.+|.|....- .++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~----------~~~------------------ 53 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPG----------APD------------------ 53 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSS----------CCT------------------
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCC----------CCC------------------
Confidence 478899999994 4433467888888755 8999999964310 000
Q ss_pred hhHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 249 IDEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 249 ~d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
+.| =||-|+|.+.+.|..-..+++|..|. +..|-..|.
T Consensus 54 ------------~~~-G~~FV~f~~~~~A~~Ai~~lnG~~~~--Gr~i~v~~a 91 (105)
T 2pe8_A 54 ------------DEA-VRIFLEFERVESAIKAVVDLNGRYFG--GRVVKACFY 91 (105)
T ss_dssp ------------TTS-EEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred ------------CCc-EEEEEEECCHHHHHHHHHHHCCCEEC--CcEEEEEEc
Confidence 111 48999999999999999999999985 344444444
No 187
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.77 E-value=2.6 Score=37.10 Aligned_cols=71 Identities=4% Similarity=-0.052 Sum_probs=50.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|.||.|+ +...||..+|+.|- .|.+|.|.+ +.. .+
T Consensus 23 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G----~v~~~~~~~--------------------~~~-------~g------ 64 (124)
T 1wel_A 23 EAGFCVYLKGLPFE-AENKHVIDFFKKLD----IVEDSIYIA--------------------YGP-------NG------ 64 (124)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHSCSSC----BCTTTCEEE--------------------ECT-------TS------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcC----CccceEEEE--------------------ECC-------CC------
Confidence 36689999999997 78899999998763 443322111 000 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
..-=||.|+|.+.+.|..... ++|..+.-
T Consensus 65 ---------~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 65 ---------KATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp ---------SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred ---------CCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 113489999999999999998 99988753
No 188
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=69.22 E-value=3.9 Score=32.21 Aligned_cols=66 Identities=6% Similarity=0.097 Sum_probs=47.9
Q ss_pred eeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHHH
Q 005276 177 RLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRA 256 (704)
Q Consensus 177 RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR~ 256 (704)
||-|-||.|+ +...||..+|+.| |.|.+|.|-...- .|.
T Consensus 1 ~l~v~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~~~~----------~~~-------------------------- 39 (75)
T 1iqt_A 1 KIFVGGLSPD-TPEEKIREYFGGF----GEVESIELPMDNK----------TNK-------------------------- 39 (75)
T ss_dssp CEEESCCCSS-CCHHHHHHHHHHH----SCCSEECCCCSCC----------CSS--------------------------
T ss_pred CEEEeCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCC----------CCC--------------------------
Confidence 5778899997 8999999999987 5677776532100 000
Q ss_pred HHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 257 YEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 257 YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.-=||.|+|.+.+.|...... +|..+.
T Consensus 40 ------~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 40 ------RRGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp ------SCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred ------cCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 123899999999999999985 776653
No 189
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=68.59 E-value=4.5 Score=37.19 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=53.7
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|-||.|+ +...||..+|+.|=+.+| |.+|.|-...-|
T Consensus 42 ~~~~~lfVgnLp~~-~te~dL~~~F~~~G~v~~-v~~v~i~~d~~g---------------------------------- 85 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS-CSVEDVQNFLSDCTIHDG-AAGVHFIYTREG---------------------------------- 85 (136)
T ss_dssp CTTCEEEEESCCTT-CCHHHHHHHTTTCCCSSS-STTEEEEECSSS----------------------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcCc-eeEEEEEECCCC----------------------------------
Confidence 35688999999998 799999999998744321 566665321111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
|.| =||.|+|.+.+.|..... ++|.++.-
T Consensus 86 --------~sr-G~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 86 --------RQS-GEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp --------CEE-EEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred --------CCC-eEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 111 389999999999999988 99988753
No 190
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=65.70 E-value=6.4 Score=32.96 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=50.0
Q ss_pred CceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHH
Q 005276 175 THRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKL 254 (704)
Q Consensus 175 T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~L 254 (704)
|+.|=|-||.|+ +.-.||..+|+.| |+.|.+|.|-... ..|.
T Consensus 1 S~~i~v~nLp~~-~te~~l~~~F~~~---G~~v~~v~i~~d~----------~t~~------------------------ 42 (91)
T 2lxi_A 1 SNIVMLRMLPQA-ATEDDIRGQLQSH---GVQAREVRLMRNK----------SSGQ------------------------ 42 (91)
T ss_dssp CCEEEEETCCSS-CCHHHHHHHHHHH---TCCCSBCCSSSCS----------SSCC------------------------
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHh---CCEeEEEEEEecC----------CCCC------------------------
Confidence 678999999996 8999999999988 2256666552110 0011
Q ss_pred HHHHhhccceeEEEEEeCCHHHHHHHHHhc-Cccccc
Q 005276 255 RAYEKSRLRYYYAVVECDSSATADYLYRAC-DGVEFE 290 (704)
Q Consensus 255 R~YQl~RLRYYYAVvecDSv~TA~~IY~ec-DG~E~E 290 (704)
. -=||.|+|.+.+.|....+.+ .|+.+.
T Consensus 43 -------~-rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 43 -------S-RGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp -------C-SSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred -------c-CceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 1 238999999999999988775 455554
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=62.45 E-value=13 Score=35.65 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
..+.|-|.||.|+ +...+|..+|+.| |.|.+|.|-... .|-
T Consensus 108 ~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~-----------~~~----------------------- 148 (193)
T 2voo_A 108 KNRSVYIKGFPTD-ATLDDIKEWLEDK----GQVLNIQMRRTL-----------HKA----------------------- 148 (193)
T ss_dssp HHTEEEEECCCTT-CCHHHHHHHHTTS----CCEEEEEEEECT-----------TCC-----------------------
T ss_pred ccCEEEecCCCCc-CCHHHHHHHHhcC----CCEEEEEEEECC-----------CCC-----------------------
Confidence 4578999999998 8889999999987 789999885421 010
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcC
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACD 285 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecD 285 (704)
. -=||.|+|.+.+.|........
T Consensus 149 --------~-kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 149 --------F-KGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp --------E-EEEEEEEESSHHHHHHHHHCTT
T ss_pred --------c-ccEEEEEECCHHHHHHHHHhCC
Confidence 1 1389999999999999987653
No 192
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.87 E-value=9.1 Score=32.82 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=50.8
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
...++|=|-||.|+ +...||..+|+.| |.| +|.|..-. .|
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~~-~v~i~~d~-----------~g----------------------- 52 (102)
T 1wez_A 13 TTGHCVHMRGLPYR-ATENDIYNFFSPL----NPM-RVHIEIGP-----------DG----------------------- 52 (102)
T ss_dssp SSSCEEEEESCCTT-CCHHHHHHSSCSC----CCS-EEEEEESS-----------SS-----------------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHc----Cce-EEEEEECC-----------CC-----------------------
Confidence 36689999999998 7899999998866 333 77764210 00
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
|. -=||.|+|.+.+.|.... +++|..+.-
T Consensus 53 --------~~-~G~afV~F~~~~~a~~Al-~~~~~~~~g 81 (102)
T 1wez_A 53 --------RV-TGEADVEFATHEDAVAAM-AKDKANMQH 81 (102)
T ss_dssp --------CE-EEEEEEECSSSHHHHHHH-TTSSCCSSS
T ss_pred --------CE-eeEEEEEECCHHHHHHHH-HhCCCeECC
Confidence 11 248999999999999888 579987754
No 193
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=58.86 E-value=22 Score=31.86 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=59.7
Q ss_pred CCceeEEecc----CCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhh
Q 005276 174 ETHRLAIVNM----DWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEI 249 (704)
Q Consensus 174 ~T~RLAvvNm----DWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~ 249 (704)
+|+=|-|.|| +|+.=--.||.-.|+.| |.|.+|.|+.-.-|. .|..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~--------~~~~------------------ 68 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGE--------EEDA------------------ 68 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESS--------STTC------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCc--------ccCC------------------
Confidence 7888999999 45432346788888755 899999998532220 0000
Q ss_pred hHHHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccccCC
Q 005276 250 DEEKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIPD 303 (704)
Q Consensus 250 d~e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVPD 303 (704)
+. .=||-|+|.+++.|.....+++|..|. +..|=..|.|.
T Consensus 69 -----------~~-~G~~FV~F~~~e~A~~Ai~~LnGr~f~--GR~i~v~~~~~ 108 (118)
T 3ue2_A 69 -----------EI-IVKIFVEFSIASETHKAIQALNGRWFA--GRKVVAEVYDQ 108 (118)
T ss_dssp -----------EE-EEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEECH
T ss_pred -----------cc-eEEEEEEECCHHHHHHHHHHHCCCEEC--CcEEEEEEcCh
Confidence 01 137999999999999999999999884 45555556553
No 194
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=55.18 E-value=16 Score=33.10 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceE-EEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQIL-SVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~-sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
.+++|=|.||.|+ +...||..+|+.| |.+. +|.|-.-.-|+
T Consensus 41 ~~~~lfVgnLp~~-~te~dL~~~F~~~----~i~~~~v~i~~d~~Gr--------------------------------- 82 (126)
T 2hgm_A 41 NDGFVRLRGLPFG-CTKEEIVQFFSGL----EIVPNGITLPVDPEGK--------------------------------- 82 (126)
T ss_dssp SCCEEEEECCCTT-CCHHHHHHHTTTS----CEEEEEEECCCCSSSS---------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcC----CceeeEEEEEECCCCC---------------------------------
Confidence 5678999999998 8899999999988 2332 66653211111
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
.| =||.|+|.+.+.|...... +|..+.
T Consensus 83 ---------sr-GfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 83 ---------IT-GEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp ---------SC-SEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred ---------Cc-eEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 11 2899999999999988874 776554
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.22 E-value=35 Score=29.60 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=43.1
Q ss_pred ccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHHHHHHHhhccceeE
Q 005276 187 HVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEKLRAYEKSRLRYYY 266 (704)
Q Consensus 187 ~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~LR~YQl~RLRYYY 266 (704)
++.-.||..+|+-| |.|..|.|- | -+ -=|
T Consensus 28 ~~te~~L~~~F~~~----G~V~~v~i~----~----------~~---------------------------------rGf 56 (100)
T 2d9o_A 28 GYSKDVLLRLLQKY----GEVLNLVLS----S----------KK---------------------------------PGT 56 (100)
T ss_dssp SCCHHHHHHHHHTT----SCEEEEEEE----S----------SS---------------------------------SSE
T ss_pred CCCHHHHHHHHHhc----CCEEEEEEc----c----------CC---------------------------------CCE
Confidence 36789999999977 789999885 1 01 128
Q ss_pred EEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 267 AVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 267 AVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
|.|+|.+.+.|........|+ .+..|-+.|
T Consensus 57 aFVeF~~~~~A~~Ai~~~~~~----~g~~l~V~~ 86 (100)
T 2d9o_A 57 AVVEFATVKAAELAVQNEVGL----VDNPLKISW 86 (100)
T ss_dssp EEEEESCHHHHHHHHHTCCBC----SSSBCEEEC
T ss_pred EEEEECCHHHHHHHHHhcCCC----CCCeEEEEE
Confidence 999999999999998886553 244444444
No 196
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=51.33 E-value=8.9 Score=35.36 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHHH
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEEK 253 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e~ 253 (704)
..++|=|.||.|+ +...||.-+|+.| | |.+|.|-.-.-|
T Consensus 45 ~~~~lfV~nLp~~-~te~dL~~~F~~~----G-i~~v~i~~d~~g----------------------------------- 83 (139)
T 2hgn_A 45 TGHCVHMRGLPYK-ATENDIYNFFSPL----N-PVRVHIEIGPDG----------------------------------- 83 (139)
T ss_dssp CCCCEECCSCCTT-CCHHHHHHHHCSC----C-CSEEECCCSSSS-----------------------------------
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhc----C-CeEEEEEECCCC-----------------------------------
Confidence 5678999999997 7899999999976 4 446665211001
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccc
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFER 291 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~ 291 (704)
+.| =||.|+|.+.+.|.... +++|..+.-
T Consensus 84 -------~sr-GfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 84 -------RVT-GEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp -------CSS-CCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred -------CCc-eEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 111 27999999999999888 889987654
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=48.58 E-value=13 Score=32.23 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=28.5
Q ss_pred eEEEEEeCCHHHHHHHHHhcCccccccccccccccccC
Q 005276 265 YYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFIP 302 (704)
Q Consensus 265 YYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFVP 302 (704)
=||-|+|.+.+.|.....+++|..|. +..|-..|.|
T Consensus 69 G~~fV~f~~~~~A~~A~~~lng~~~~--Gr~i~v~~sp 104 (104)
T 1jmt_A 69 GNVYVKFRREEDAEKAVIDLNNRWFN--GQPIHAELSP 104 (104)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEET--TEECCEEECC
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEEC--CEEEEEEEcC
Confidence 38999999999999999999999875 3444444444
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=47.28 E-value=22 Score=32.07 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCC-ceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDG-QILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG-~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
..+++|=|.||.|+ +...||..+|+.|-+.-| .|..+. .|..
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~~~~~~~~~~~----------------~~~~-------------------- 53 (175)
T 1fje_B 11 TTPFNLFIGNLNPN-KSVAELKVAISELFAKNDLAVVDVR----------------TGTN-------------------- 53 (175)
T ss_dssp SSSEEEEEECCCTT-SCHHHHHHHHHHHHHHHTCCCCEEE----------------EETT--------------------
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEECC----------------CCcc--------------------
Confidence 47899999999995 899999999998865433 222110 0110
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCcccccccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRFI 301 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRFV 301 (704)
-=||.|+|.+.+.|.... +++|+.+. +..|-+++.
T Consensus 54 ------------~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~v~~~ 88 (175)
T 1fje_B 54 ------------RKFGYVDFESAEDLEKAL-ELTGLKVF--GNEIKLEKP 88 (175)
T ss_dssp ------------TTEEEEEESSHHHHHHHH-HGGGEEET--TEEEEEECC
T ss_pred ------------ccEEEEEECCHHHHHHHH-hcCCCEeC--CeEEEEecC
Confidence 128999999999999999 69999887 455555443
No 199
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=43.72 E-value=19 Score=29.99 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..+++|=|-||.|+ +...||..+|+.|-+ |.+ ..+.+...
T Consensus 15 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~----v~~---------------------~~~~~~~~-------------- 54 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN-KSVAELKVAISELFA----KND---------------------LAVVDVRT-------------- 54 (101)
T ss_dssp SCSEEEEEECCCTT-SCHHHHHHHHHHHHH----HHT---------------------CCCCEEEE--------------
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCC----cce---------------------EEEecCCC--------------
Confidence 36789999999995 788999999987632 111 00110000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccccccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKLDLRF 300 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~lDLRF 300 (704)
.+. .=||.|+|.+.+.|..... ++|..+. +..|-+++
T Consensus 55 -------g~~-~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V~~ 91 (101)
T 1fj7_A 55 -------GTN-RKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKLEK 91 (101)
T ss_dssp -------ETT-TTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEEEC
T ss_pred -------CCc-CcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEEEE
Confidence 011 1279999999999999998 9999887 34444443
No 200
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.44 E-value=17 Score=33.43 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEEEEeCCHHHHHHHHHhcCccccc
Q 005276 266 YAVVECDSSATADYLYRACDGVEFE 290 (704)
Q Consensus 266 YAVvecDSv~TA~~IY~ecDG~E~E 290 (704)
=|||+|.++.+|-+.-=++||.||+
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ceEEEEccchhhHHHHhhcCCeeec
Confidence 3999999999999999999999998
No 201
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.70 E-value=32 Score=30.54 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=50.7
Q ss_pred CCce-eEEeccCCCccchhhHHH-HHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhH
Q 005276 174 ETHR-LAIVNMDWRHVKAVDLLV-ILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDE 251 (704)
Q Consensus 174 ~T~R-LAvvNmDWD~IrA~DL~v-lf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~ 251 (704)
++.- |=|-||.|+ ++..+|-. |..-|-+-||.|++|+ | |
T Consensus 7 p~~T~lYV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~Vt------g----------G---------------------- 47 (96)
T 2diu_A 7 GCHTLLYVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSIT------G----------C---------------------- 47 (96)
T ss_dssp CSSEEEEEESCCTT-SCHHHHHHHHHHHHHTTTCCEEECC------T----------T----------------------
T ss_pred CcceEEEEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEEe------c----------C----------------------
Confidence 3455 669999996 45555332 3333445678999993 1 2
Q ss_pred HHHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccccccccccc
Q 005276 252 EKLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVEFERSSNKL 296 (704)
Q Consensus 252 e~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E~E~San~l 296 (704)
+|.|+|.+++.|..-+++++|.++---..++
T Consensus 48 --------------~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 48 --------------SAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp --------------CEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred --------------EEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 6999999999999999999999987554443
No 202
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=24.71 E-value=31 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecChhhHHhHHHHHhhCCccccCCCCCCCCCCCChhhhHH
Q 005276 173 NETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPSEFGIQRMKEEEVRGPVGLFDSQNENSDDEDNDEIDEE 252 (704)
Q Consensus 173 ~~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPSeFGkeRM~~Ee~~GP~~l~~~~~~~~~~~~~~e~d~e 252 (704)
..-+.|=|-||.| ++...+|..+|+.|-+. .|.+|.|.. +...
T Consensus 7 ~~m~tlfV~nL~~-~~tee~L~~~F~~~G~i--~v~~v~i~~--------------------d~~t-------------- 49 (95)
T 2lkz_A 7 HHMDTIILRNIAP-HTVVDSIMTALSPYASL--AVNNIRLIK--------------------DKQT-------------- 49 (95)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHSTTTCCC--CGGGEECCC--------------------CSSS--------------
T ss_pred CccCEEEEeCCCC-cCCHHHHHHHHHhhCCc--cEEEEEEEe--------------------cCCC--------------
Confidence 3566799999999 68999999999977431 244444421 0000
Q ss_pred HHHHHHhhccceeEEEEEeCCHHHHHHHHHhcCccc
Q 005276 253 KLRAYEKSRLRYYYAVVECDSSATADYLYRACDGVE 288 (704)
Q Consensus 253 ~LR~YQl~RLRYYYAVvecDSv~TA~~IY~ecDG~E 288 (704)
.+. -=||-|+|.+.+.|....+.|+|++
T Consensus 50 -------g~s-rG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 50 -------QQN-RGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp -------SSC-SSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred -------CCC-ceEeEEEECCHHHHHHHHHHhcCCC
Confidence 001 1389999999999999999999986
No 203
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=22.54 E-value=18 Score=35.62 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhhccceeEEEEEeCCHHHHH
Q 005276 254 LRAYEKSRLRYYYAVVECDSSATAD 278 (704)
Q Consensus 254 LR~YQl~RLRYYYAVvecDSv~TA~ 278 (704)
+|...++.|+||.||++|-|...|.
T Consensus 11 ~~~m~l~~L~~f~~v~~~gs~t~AA 35 (315)
T 1uth_A 11 LRDIDLNLLVVFNQLLLDRSVSTAG 35 (315)
T ss_dssp -------------------------
T ss_pred cccCCHHHHHHHHHHHHcCCHHHHH
Confidence 6778899999999999999987664
No 204
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=21.81 E-value=52 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCceeEEeccCCCccchhhHHHHHhcccCCCCceEEEEEecC
Q 005276 174 ETHRLAIVNMDWRHVKAVDLLVILSSFLPKDGQILSVAVYPS 215 (704)
Q Consensus 174 ~T~RLAvvNmDWD~IrA~DL~vlf~SF~P~gG~I~sV~IYPS 215 (704)
.+++|-|-||.| .+...||..+|+.| |.|.+|.|...
T Consensus 86 ~~~~l~V~nlp~-~~t~~~l~~~F~~~----G~i~~~~i~~~ 122 (167)
T 2cjk_A 86 KTGKIFVGGIGP-DVRPKEFEEFFSQW----GTIIDAQLMLD 122 (167)
T ss_dssp HCEEEEEEEECT-TCCHHHHHHHHHTT----SCCSEEECCCS
T ss_pred CCCeEEECCCCC-CCCHHHHHHHHHhC----ccEEEEEEEEc
Confidence 577999999998 57889999999977 78999998764
Done!