BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005277
(704 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 68/401 (16%)
Query: 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV 388
RNR+ S+++ V+F S DG +A D ++K+W+ + GQ +
Sbjct: 9 RNRLEAHSSSVRGVAF---------------SPDGQTIASASDDKTVKLWN--RNGQ--L 49
Query: 389 SSGLQGENDT------TPREDIIGPNGRKRSYTLYQ----------GHSGPVYSASFSPL 432
L G + + +P I ++ L+ GHS V +FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 109
Query: 433 GDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
G I S+S D T++LW+ N L+ GH+ VW V F+P G AS+S D+T ++W+
Sbjct: 110 GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551
+ Q L+ + GH S V V + + IA+ S DKTV+LW+ +G+ ++ GH S +
Sbjct: 168 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYR-----FLLLVTNA 606
+A SPDG+ +AS +D T+ +W+ +G+ + L GH+S V +A+R +
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 607 YLKISDKVSTGFLFYSLT---IIYFGCA-SCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
+K+ ++ G L +LT +G A S +G +AS S D TVKLW+
Sbjct: 285 TVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----------- 331
Query: 663 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 703
++G + L+TL S+ V+ + FS A+ + KT
Sbjct: 332 -RNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 178/367 (48%), Gaps = 43/367 (11%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYT 415
+ S DG +A D ++K+W+ Q ++ N R D I ++
Sbjct: 228 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 416 LYQ----------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
L+ GHS V+ +FSP G I S+S D T++LW+ + +L GH+
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSS 346
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
VW V F+P G AS+S D+T ++W+ + Q L+ + GH S V V + + IA+ S
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
DKTV+LW+ +G+ ++ GH S + +A SPD + +AS +D T+ +W+ +G+ + L
Sbjct: 406 DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTL 463
Query: 586 MGHTSCVWTLAYR-----FLLLVTNAYLKISDKVSTGFLFYSLT---IIYFGCA-SCEGS 636
GH+S V +A+ + +K+ ++ G L +LT G A S +G
Sbjct: 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQ 521
Query: 637 LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
+AS S D TVKLW+ ++G + L+TL S+ V+ + FS A
Sbjct: 522 TIASASDDKTVKLWN------------RNG----QLLQTLTGHSSSVWGVAFSPDGQTIA 565
Query: 697 AGALSKT 703
+ + KT
Sbjct: 566 SASSDKT 572
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 136/243 (55%), Gaps = 17/243 (6%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHY 477
GHS V+ +FSP G I S+S D T++LW+ N L+ GH+ V V F+P G
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
AS+S D+T ++W+ + Q L+ + GH S V V + + IA+ S DKTV+LW+ +G
Sbjct: 400 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNG 457
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ ++ GH S + +A SPDG+ +AS +D T+ +W+ +G+ + L GH+S V +A+
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 516
Query: 598 R-----FLLLVTNAYLKISDKVSTGFLFYSLT---IIYFGCA-SCEGSLLASGSADCTVK 648
+ +K+ ++ G L +LT +G A S +G +AS S+D TVK
Sbjct: 517 SPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574
Query: 649 LWD 651
LW+
Sbjct: 575 LWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 406 GPNGRKR-----------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
GP G+KR Y L GH PV F P+ ++S+S D TI++W +
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
KGH V D+ F+ G AS S D T ++W + +R M GH +V V
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
N ++I + S DKT+++W+V +G CV+ F GHR + + + DG +AS D T+ +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 575 DLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCE 634
+A+ C L H V +++ ++Y IS+ +TG +
Sbjct: 262 VVATKECKAELREHRHVVECISW----APESSYSSISE--ATGSETKK--------SGKP 307
Query: 635 GSLLASGSADCTVKLWDVTT 654
G L SGS D T+K+WDV+T
Sbjct: 308 GPFLLSGSRDKTIKMWDVST 327
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 48/260 (18%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S G L+A +D ++K+WD G + + +
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQ--GFECIRT--------------------------M 188
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH V S S P GD I+S+S D TI++W + + + GH V V+ N G
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY------------------ 519
AS S+D+T R+W + + + H V+C+ W +Y
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 520 --IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577
+ +GS DKT+++WDVS+G C+ +GH + + + G+++ S +D T+ +WD
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 578 SGRCVTPLMGHTSCVWTLAY 597
+ RC+ L H V +L +
Sbjct: 369 NKRCMKTLNAHEHFVTSLDF 388
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
TF + +QDG+L+A +D +++VW +A + + L+ E+
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA---TKECKAELR-EHRHVVECISW 284
Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
P SY+ +G S P G F+LS S D TI++W L+ GH+
Sbjct: 285 APES---SYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
V V F+ G + S + D+T R+W + ++ + H V + +H Y+ TGS
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 526 DKTVRLWD 533
D+TV++W+
Sbjct: 401 DQTVKVWE 408
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
G G + T + + PN + +TL GH+ V S FSP G+++ SSSAD I++W
Sbjct: 1 GAMGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
GH + DV ++ + S+S D+T +IW + + L+ + GH + V C
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
++ N I +GS D++VR+WDV +G+C++ H + ++ + DG + S DG
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLM 586
+WD ASG+C+ L+
Sbjct: 179 CRIWDTASGQCLKTLI 194
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 103
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 104 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ ++ V V++ N YI
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 275 KEIVQKLQGHTDVV 288
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 28 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
L+ + + +++L T + LK+ D S G + T I+
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
+ G + SGS D V +W++ T V K +
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 119
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 120 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ ++ V V++ N YI
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 291 KEIVQKLQGHTDVV 304
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 139
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 140 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 171
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 172 DPVSAVHFNRDGSLIVSSS 190
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 30 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
L+ + + +++L T + LK+ D S G + T I+
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 268
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
+ G + SGS D V +W++ T V K +
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 121
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 122 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ ++ V V++ N YI
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 293 KEIVQKLQGHTDVV 306
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 141
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 142 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 173
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 174 DPVSAVHFNRDGSLIVSSS 192
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
G G + T + + PN + +TL GH+ V S FSP G+++ SSSAD I++W
Sbjct: 1 GPLGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
GH + DV ++ + S+S D+T +IW + + L+ + GH + V C
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
++ N I +GS D++VR+WDV +G+C++ H + ++ + DG + S DG
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLM 586
+WD ASG+C+ L+
Sbjct: 179 CRIWDTASGQCLKTLI 194
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 103
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 104 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ ++ V V++ N YI
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 275 KEIVQKLQGHTDVV 288
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 12 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
L+ + + +++L T + LK+ D S G + T I+
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 250
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
+ G + SGS D V +W++ T V K +
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 104
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ ++ V V++ N YI + D T++L
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 589 TSCV 592
T V
Sbjct: 285 TDVV 288
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 123
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 124 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 155
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSS 174
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 23 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 584 PLMGHTSCVWTLAY-----RFLLLVT-NAYLKISDKVSTGFLFYSLT-------IIYFGC 630
L+ + + +++L T + LK+ D S G + T I+
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 261
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTE 662
+ G + SGS D V +W++ T V K +
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 115
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 589 TSCV 592
T V
Sbjct: 296 TDVV 299
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 134
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 135 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 166
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 167 DPVSAVHFNRDGSLIVSSS 185
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 7 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 66
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 584 PLM 586
L+
Sbjct: 187 TLI 189
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 99
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ ++ V V++ N YI + D T++L
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 589 TSCV 592
T V
Sbjct: 280 TDVV 283
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 119 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 150
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 151 DPVSAVHFNRDGSLIVSSS 169
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 2 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 584 PLM 586
L+
Sbjct: 182 TLI 184
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 94
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ ++ V V++ N YI + D T++L
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 589 TSCV 592
T V
Sbjct: 275 TDVV 278
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 113
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 114 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 145
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 146 DPVSAVHFNRDGSLIVSSS 164
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 11 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 70
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 584 PLM 586
L+
Sbjct: 191 TLI 193
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 102
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 103 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ ++ V V++ N YI
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 274 KEIVQKLQGHTDVV 287
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 122
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 123 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 154
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 155 DPVSAVHFNRDGSLIVSSS 173
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLM 586
L+
Sbjct: 186 TLI 188
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCV 592
T V
Sbjct: 279 TDVV 282
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 117
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 118 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 149
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSS 168
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLM 586
L+
Sbjct: 186 TLI 188
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 98
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 589 TSCV 592
T V
Sbjct: 279 TDVV 282
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 117
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 118 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 149
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSS 168
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 92/168 (54%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+ V S FSP G+++ SSSAD I++W GH + DV ++ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S+S D+T +IW + + L+ + GH + V C ++ N I +GS D++VR+WDV +G+
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
C++ H + ++ + DG + S DG +WD ASG+C+ L+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
T V
Sbjct: 282 TDVV 285
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ + +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
PV ++ F+R L +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 92/168 (54%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+ V S FSP G+++ SSSAD I++W GH + DV ++ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S+S D+T +IW + + L+ + GH + V C ++ N I +GS D++VR+WDV +G+
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
C++ H + ++ + DG + S DG +WD ASG+C+ L+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
T V
Sbjct: 282 TDVV 285
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ + +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
PV ++ F+R L +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 3/185 (1%)
Query: 405 IGPNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
+G K +Y L GH+ V S FSP G+++ SSSAD I++W G
Sbjct: 3 LGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 62
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
H + DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
+GS D++VR+WDV +G+C++ H + ++ + DG + S DG +WD ASG+C
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 582 VTPLM 586
+ L+
Sbjct: 183 LKTLI 187
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 97
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 589 TSCV 592
T V
Sbjct: 278 TDVV 281
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 116
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 117 -------------QSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 148
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 149 DPVSAVHFNRDGSLIVSSS 167
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 344 FYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
F I+ H G++ + S D +L+ D +LK+WD VSSG
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG----------- 100
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
+ +GHS V+ +F+P + I+S S D ++R+W K L H
Sbjct: 101 ---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIA 521
+ PV V FN G SSS+D RIW Q L+ + + V V++ N YI
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D T++LWD S G+C++ + GH++ I + G+++ SG ED + +W+L +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 579 GRCVTPLMGHTSCV 592
V L GHT V
Sbjct: 272 KEIVQKLQGHTDVV 285
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 92/168 (54%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+ V S FSP G+++ +SSAD I++W GH + DV ++ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S+S D+T +IW + + L+ + GH + V C ++ N I +GS D++VR+WDV +G+
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
C++ H + ++ + DG + S DG +WD ASG+C+ L+
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 49/197 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF----------------------- 118
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ + +L+ SGS D +V++WDV T + LKTLP S
Sbjct: 119 -----------NPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAA 697
PV ++ F+R L +
Sbjct: 153 DPVSAVHFNRDGSLIVS 169
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D T++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
T V
Sbjct: 282 TDVV 285
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLM 586
L+
Sbjct: 189 TLI 191
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 120
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T LKTLP S
Sbjct: 121 -------------QSNLIVSGSFDESVRIWDVKTG---------------MCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSS 171
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 3/183 (1%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
P K +Y L GH+ V S FSP G+++ SSSAD I++W GH
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
+ DV ++ + S+S D+T +IW + + L+ + GH + V C ++ N I +G
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
S D++VR+WDV +G C++ H + ++ + DG + S DG +WD ASG+C+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLM 586
L+
Sbjct: 189 TLI 191
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 32/244 (13%)
Query: 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412
G++ + S D +L+ D +LK+WD VSSG +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWD--------VSSG--------------------K 101
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN 472
+GHS V+ +F+P + I+S S D ++R+W K L H+ PV V FN
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDKTVRL 531
G SSS+D RIW Q L+ + + V V++ N YI + D ++L
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 532 WDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
WD S G+C++ + GH++ I + G+++ SG ED + +W+L + V L GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 589 TSCV 592
T V
Sbjct: 282 TDVV 285
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 35/201 (17%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
GH V V+F+P G + ASSS D+ +IW + + ++GH + V W + N +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
+ S DKT+++WDVSSG+C++ GH + + +P + SG D ++ +WD+ +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 581 CVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLAS 640
C+ L H SD VS ++F + +GSL+ S
Sbjct: 144 CLKTLPAH----------------------SDPVSA---------VHF---NRDGSLIVS 169
Query: 641 GSADCTVKLWDVTTSTKVLKT 661
S D ++WD T S + LKT
Sbjct: 170 SSYDGLCRIWD-TASGQCLKT 189
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 49/199 (24%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+AGH V V++ N ++A+ S+DK +++W G+ + GH+ I +A S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLF 620
+ S +D T+ +WD++SG+C+ L GH++ V+ +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP--------------------- 120
Query: 621 YSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 680
+ +L+ SGS D +V++WDV T LKTLP S
Sbjct: 121 -------------QSNLIVSGSFDESVRIWDVKTG---------------MCLKTLPAHS 152
Query: 681 TPVYSLQFSRRNLLFAAGA 699
PV ++ F+R L + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSS 171
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 34/266 (12%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GHS V S G F LS S D +RLW + + GH V V F+
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHINC--NYIATGSSDKTVRLWD 533
S+S DRT ++W+ I G H V CVR+ N I + S DKTV++W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR------------- 580
+S+ + GH + ++A+SPDG ASG +DG +++WDLA G+
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 581 -CVTP-------LMGHTSCVWTLAYRFLLLVTNAYLKISDKVS--TGFLFYSLTIIYFGC 630
C +P H +W L + ++ LK + + +G +IY C
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY--C 665
Query: 631 A----SCEGSLLASGSADCTVKLWDV 652
S +GS L SG D +++W +
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 37/233 (15%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
+S DG G D L++WD+A G + R+ +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAA-----------------------GVSTRR-----FV 469
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG 475
GH+ V S +FS I+S+S D TI+LW+T +GH V V+F+P
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 476 --HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
S+S D+T ++W++ + +AGH V V + + A+G D V LWD
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Query: 534 VSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
++ G+ +++ + S+I +L SP+ ++ + E G I +WDL S V L
Sbjct: 590 LAEGK--KLYSLEANSVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDL 639
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 478 FASSSHDRTARIWSMDRIQPL-----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
S+S D++ +W + + R + GH V+ V + + +GS D +RLW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM----GH 588
D+++G R F+GH +LS+A S D R + S D TI +W+ G C + GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGH 516
Query: 589 ---TSCV---------------WTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
SCV W + L +N L+ + TG Y T+
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL-SNCKLRSTLAGHTG---YVSTV----A 568
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 665
S +GSL ASG D V LWD+ K+ E S
Sbjct: 569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 516 NCNYIATGSSDKTVRLW-----DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
N + I + S DK++ LW D + G R GH + + +S DG++ SG DG
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ +WDLA+G +GHT V ++A+
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAF 480
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
S +G L +G D +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 518 NYIATGSSDKTVRLWDVSS-----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
N + + S DKT+ W ++ G VR F GH ++ ++ DG Y S D T+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 573 MWDLASGRCVTPLMGHTSCV 592
+WD+A+G +GH S V
Sbjct: 91 LWDVATGETYQRFVGHKSDV 110
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
S +G L +G D +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 518 NYIATGSSDKTVRLWDVSS-----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
N + + S DKT+ W ++ G VR F GH ++ ++ DG Y S D T+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 573 MWDLASGRCVTPLMGHTSCV 592
+WD+A+G +GH S V
Sbjct: 91 LWDVATGETYQRFVGHKSDV 110
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
S +G L +G D +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 518 NYIATGSSDKTVRLWDVSS-----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
N + + S DKT+ W ++ G VR F GH ++ ++ DG Y S D T+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 573 MWDLASGRCVTPLMGHTSCV 592
+WD+A+G +GH S V
Sbjct: 91 LWDVATGETYQRFVGHKSDV 110
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 167
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 228 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 286
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
S +G L +G D +++W V T+
Sbjct: 287 AWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 518 NYIATGSSDKTVRLWDVSS-----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
N + + S DKT+ W ++ G VR F GH ++ ++ DG Y S D T+
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 573 MWDLASGRCVTPLMGHTSCV 592
+WD+A+G +GH S V
Sbjct: 85 LWDVATGETYQRFVGHKSDV 104
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 93 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 148
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 208
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 266
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDV 534
LR AG+ + + W + + G +D +R+W V
Sbjct: 267 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 31/210 (14%)
Query: 460 KGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--HIN 516
KGH+ + + +QF G+ S S D T ++WS + LR + GH V W +
Sbjct: 115 KGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
N I +GS+D+T+++W+ +GEC+ GH S + + + + + SG D T+ +WD+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 577 ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY---LKISDKVSTGFL---------FYSLT 624
+G+C+ LMGH + V + Y +V+ AY +K+ D + L YSL
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286
Query: 625 IIYFGCASCEGSLLASGSADCTVKLWDVTT 654
+G + SGS D ++++WDV T
Sbjct: 287 F--------DGIHVVSGSLDTSIRVWDVET 308
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 71/357 (19%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420
G+ + G D++LKVW A G+ + + G + R++II R+ ++
Sbjct: 129 GNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 421 SGPVYSASFSPLGDF---------ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
+G + ++S S D T+R+W + L GH V VQ+
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
+ G S ++D ++W + L + GH + V ++ + ++ +GS D ++R+
Sbjct: 248 D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRV 303
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---H 588
WDV +G C+ GH+S L+ M + SG+ D T+ +WD+ +G+C+ L G H
Sbjct: 304 WDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 589 TSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVK 648
S V L + ++T+ S D TVK
Sbjct: 362 QSAVTCLQFNKNFVITS------------------------------------SDDGTVK 385
Query: 649 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP--VYSLQFSRRNLLFAAGALSKT 703
LWD LKT E +R+L TL + + V+ ++ S L+ A G+ + T
Sbjct: 386 LWD-------LKTGE-----FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 541 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFL 600
++ GH +++ + G + SG +D T+ +W +G+C+ L+GHT VW+ R
Sbjct: 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 601 LLV---TNAYLKISDKVSTGFLFYSLTIIYFG------CASCEGSLLASGSADCTVKLWD 651
+++ T+ LK+ + TG ++L +G C + SGS D T+++WD
Sbjct: 171 IIISGSTDRTLKVWN-AETGECIHTL----YGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225
Query: 652 VTT 654
+ T
Sbjct: 226 IET 228
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 42/143 (29%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAK-------LGQQAVSSGLQ--------GENDTTPR- 401
S+ DG V G D+S++VWD+ G Q+++SG++ G D+T +
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 343
Query: 402 ---------EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
+ + GPN + + T Q + +F+++SS D T++LW K
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNK------------NFVITSSDDGTVKLWDLKT 391
Query: 453 NA---NLVCYK--GHNYPVWDVQ 470
NLV + G VW ++
Sbjct: 392 GEFIRNLVTLESGGSGGVVWRIR 414
>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|B Chain B, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|C Chain C, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|D Chain D, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|E Chain E, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
Length = 138
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 71 YSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLR 130
Y L++W SLDL+K++LL +LYP+FIH + DL+ + EA+ FF +R DH
Sbjct: 12 YVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSE 70
Query: 131 DLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 190
++++ E + + H+ E FA++ ++SK ++ + +Y+++LL+ +L + T +L I+N+ +
Sbjct: 71 EIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHL 130
Query: 191 NFQVSPG 197
+ +V G
Sbjct: 131 DIKVYVG 137
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 40/285 (14%)
Query: 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG---------------LQG 394
T G+ C + D + G D+++K+WD L + + +G + G
Sbjct: 132 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 189
Query: 395 ENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
+D+T R + N + TL H V F+ +++ S D +I +W
Sbjct: 190 SSDSTVR--VWDVNTGEMLNTLIH-HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT 244
Query: 455 NLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511
++ + GH V V F+ + Y S+S DRT ++W+ + +R + GH + C+
Sbjct: 245 DITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
++ + +GSSD T+RLWD+ G C+R+ GH ++ + D + + SG DG I
Sbjct: 303 QYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 358
Query: 572 MMWDL---------ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAY 607
+WDL A C+ L+ H+ V+ L + +V++++
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH 403
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS 525
V+ +Q++ Q S D T +IW + ++ RI+ GH V C+++ + I TGSS
Sbjct: 136 VYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 526 DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-- 583
D TVR+WDV++GE + I H +L L + M + +D +I +WD+AS +T
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLR 249
Query: 584 -PLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTI----IYFGCASCEGSLL 638
L+GH + V + + +V+ + + +T + T+ C L+
Sbjct: 250 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLV 309
Query: 639 ASGSADCTVKLWDVTTST--KVLKTEEK 664
SGS+D T++LWD+ +VL+ E+
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEE 337
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 35/266 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG I +W+LA+ +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLWDVTTS 655
S +G L +G D +++W V T+
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S + G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLWDVSSG 537
LR AG+ + + W + + G +D +R+W V +
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 35/261 (13%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
++GHS V + + G + LS+S D T+RLW + GH V V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 477 YFASSSHDRTARIWSM------------DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
S S D+T ++W++ D + +R++ +D D V I +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT-------IISAG 173
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
+DK V+ W+++ + FIGH S I +L SPDG +AS +DG IM+W+LA+ + +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 585 LMGHTSCVWTLAY---RFLLLVTNAY-LKI--------SDKVSTGFLFYSLTIIYFGCA- 631
L V++LA+ R+ L A +K+ D + F YS +
Sbjct: 234 LSAQDE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 632 --SCEGSLLASGSADCTVKLW 650
S +G L +G D +++W
Sbjct: 293 AWSADGQTLFAGYTDNVIRVW 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 518 NYIATGSSDKTVRLWDVSS-----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
N + + S DKT+ W ++ G VR F GH ++ ++ DG Y S D T+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 573 MWDLASGRCVTPLMGHTSCV 592
+WD+A+G +GH S V
Sbjct: 91 LWDVATGETYQRFVGHKSDV 110
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----- 397
++ F+ + + I + S++ G D ++KVW + GQ + L G ND
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLAT--LLGHNDWVSQV 154
Query: 398 -TTPRED-------IIGPNGRK--RSYTLYQ--------GHSGPVYSASFSPLGDFILSS 439
P E II K +++ L Q GH+ + + + SP G I S+
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RIQ 496
D I LW+ + + V+ + F+P ++ A+++ +++S+D +
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 497 PLRI-MAGHLSDVD----CVRWHINCNYIATGSSDKTVRLW 532
LR AG+ + + W + + G +D +R+W
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 406 GPNGRKRS----YTL----YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV 457
GPN + S Y L +GHS V + S G+F +S+S D ++RLW+ +
Sbjct: 44 GPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY 103
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWH- 514
+ GH V V F+P S D R+W++ + + + ++ H V CVR+
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162
Query: 515 -INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
++ I +G D V++WD+++G V GH + + S+ +SPDG AS D+DG +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 574 WDLASGRCVTPL 585
WDL G ++ +
Sbjct: 223 WDLTKGEALSEM 234
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
P R + GH + V V N N+ + S D ++RLW++ +G+C F+GH +LS+A S
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRF------LLLVTNAY--- 607
PD R + SG D + +W++ G C+ L W RF ++V+ +
Sbjct: 119 PDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 608 LKISDKVSTGFLFYSL----TIIYFGCASCEGSLLASGSADCTVKLWDVT 653
+K+ D ++TG L L + S +GSL AS D +LWD+T
Sbjct: 178 VKVWD-LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 38/242 (15%)
Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
Y F+ + + S D + G D++L+VW++ +S G
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG------------- 149
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
H+ V FSP D I+S D +++W + KGH
Sbjct: 150 --------------AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH 195
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
V V +P G ASS D AR+W + + + L MA + ++ + + N Y
Sbjct: 196 TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG-APINQICFSPN-RYWMC 253
Query: 523 GSSDKTVRLWDVSSGECVRIFI----GHRSMI---LSLAMSPDGRYMASGDEDGTIMMWD 575
+++K +R++D+ + + + G + ++ +S+A S DG + SG D I +W
Sbjct: 254 AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWG 313
Query: 576 LA 577
++
Sbjct: 314 VS 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 107/265 (40%), Gaps = 43/265 (16%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
+ S FSP G F+ + + D IR+W + ++ +GH ++ + + P G S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
DRT RIW + Q ++ + YIA GS D+ VR+WD +G V
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 544 -------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA------------SGRCVTP 584
GH+ + S+ + DG+ + SG D ++ +W+L SG C
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 585 LMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFY-------------------SLTI 625
+GH V ++A N +S G LF+ S+ +
Sbjct: 306 YIGHKDFVLSVA-----TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360
Query: 626 IYFGCASCEGSLLASGSADCTVKLW 650
E ++ A+GS DC ++W
Sbjct: 361 ANGSSLGPEYNVFATGSGDCKARIW 385
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 46/187 (24%)
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
++ATG+ D+ +R+WD+ + + V I GH I SL P G + SG D T+ +WDL +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 579 GRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
G+C + L I D V+T + +G +
Sbjct: 197 GQC-----------------------SLTLSIEDGVTT-----------VAVSPGDGKYI 222
Query: 639 ASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA 696
A+GS D V++WD T V L +E +SGT S VYS+ F+R
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS----------VYSVVFTRDGQSVV 272
Query: 697 AGALSKT 703
+G+L ++
Sbjct: 273 SGSLDRS 279
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
++DG V G D S+K+W+ LQ N+ + D PN T Y
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWN------------LQNANN---KSDSKTPNSGTCEVT-YI 307
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV------QFN 472
GH V S + + ++ILS S D + W K L+ +GH V V
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 367
Query: 473 PQGHYFASSSHDRTARIWSMDRIQP 497
P+ + FA+ S D ARIW +I P
Sbjct: 368 PEYNVFATGSGDCKARIWKYKKIAP 392
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLV 603
+ H S++ + S DG Y+A+G + T ++ ++ G V L +
Sbjct: 61 LDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDS-------------- 105
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVL 659
A K + ++T S I C S +G LA+G+ D +++WD+ V+
Sbjct: 106 --AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 159
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+ VY A FS G I S AD T++++ + L+ K H V F+ Y A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSG 537
+ S D+ +IW + + H V+C + N++ ATGS+D ++LWD++
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
EC GH + + SPD +AS DGT+ +WD+ S
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 354 LNCASISQDGSLVAGGFSDSSLKVWDM-------AKLGQQAVSSGLQ----GENDTTPRE 402
++C +S VA G D ++K+ ++ + +G + +Q G+ + E
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 403 DIIGP--NGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWST---KLNANL 456
D + N + Y Q H V F L D +LS S D T+++W+ ++ +
Sbjct: 1031 DSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
C++G V + F+S+S D+TA+IWS D + PL + GH V C + ++
Sbjct: 1089 TCHQG---TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 517 CNYIATGSSDKTVRLWDVSSGE----CVRIFI-----GHRSMILSLAMSPDGRYMASGDE 567
+ATG + +R+W+VS G+ C I + H + + SPD + + S
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-- 1203
Query: 568 DGTIMMWDLASG 579
G + W++A+G
Sbjct: 1204 GGYLKWWNVATG 1215
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/380 (20%), Positives = 146/380 (38%), Gaps = 80/380 (21%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
T N +N S D L+A +D +L++WD+ + ++++ + P ED
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 404 ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
I+ + + ++ GH + FSP +
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------- 490
+ + + LW+ + +GH V V F+P G F ++S D+T R+W
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 491 ---------------------SMDRIQPLRIMAGHLSDVD----------CVRWHINCNY 519
++D I+ L+++AG +D C+ H+ Y
Sbjct: 925 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EY 982
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+A G D +++ ++ + +GH+ + + + DG+ + S ED I +W+ +G
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 580 RCVTPLMGHTSCVWTLAY----RFLLLVTNAYLK----ISDKVSTGFLFYSLTIIYFGCA 631
V L H V R L + +K I+ ++ F + T++ CA
Sbjct: 1043 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL--SCA 1099
Query: 632 -SCEGSLLASGSADCTVKLW 650
S + + +S SAD T K+W
Sbjct: 1100 ISSDATKFSSTSADKTAKIW 1119
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 19/283 (6%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D +++VW+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNS-AIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +++ D I++ N GH V
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
+QF G SSS D ++W+ + + H V R + + + + S D T
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGT 1073
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V++W+V +G R F H+ +LS A+S D +S D T +W + L GH
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
Query: 589 TSCVWTLAYRF--LLLVT---NAYLKISDKVSTGFLFYSLTII 626
CV A+ +LL T N ++I + VS G L +S I
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWN-VSDGQLLHSCAPI 1175
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
N + + + H V+ F+ G AS D+T +++ + + L + H +V C
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
+ + +YIAT S+DK V++WD ++G+ V + H + + + +A+G D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
+ +WDL C + GHT+ V +
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRF--------------------------------- 758
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTK 657
S + LLAS SAD T++LWDV ++ +
Sbjct: 759 -SPDDELLASCSADGTLRLWDVRSANE 784
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 69/340 (20%)
Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
A SQDG +A +D +L+V+ A+ G++ + DI
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFK-AETGEKLL--------------DI------------ 660
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H V +FS +I + SAD +++W + + Y H+ V F + +
Sbjct: 661 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 477 Y--FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
+ A+ S+D ++W +++ + M GH + V+ R+ + +A+ S+D T+RLWDV
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 535 SSGECVRIFIGHRSMILSLAMSPDG--------RYMASGDE-----DGTIMMWDL-ASGR 580
S R I + LS P+ + A GD+ ++++D+ SG
Sbjct: 780 RSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 838
Query: 581 CVTPLMGHTSCVWTL---AYRFLLLVT-----------NAYLKISDKVSTGFLFYSLTII 626
GH S + Y L ++ ++ LK++D G L + ++
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVM 896
Query: 627 YFGCASCEGSLLASGSADCTVKLWDVTTSTK----VLKTE 662
+ S +GS + S D T+++W+ K VLK E
Sbjct: 897 F----SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+ VY A FS G I S AD T++++ + L+ K H V F+ Y A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSG 537
+ S D+ +IW + + H V+C + N++ ATGS+D ++LWD++
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
EC GH + + SPD +AS DGT+ +WD+ S
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 354 LNCASISQDGSLVAGGFSDSSLKVWDM-------AKLGQQAVSSGLQ----GENDTTPRE 402
++C +S VA G D ++K+ ++ + +G + +Q G+ + E
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 403 DIIGP--NGRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWST---KLNANL 456
D + N + Y Q H V F L D +LS S D T+++W+ ++ +
Sbjct: 1024 DSVIQVWNWQTGDYVFLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
C++G V + F+S+S D+TA+IWS D + PL + GH V C + ++
Sbjct: 1082 TCHQG---TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 517 CNYIATGSSDKTVRLWDVSSGE----CVRIFI-----GHRSMILSLAMSPDGRYMASGDE 567
+ATG + +R+W+VS G+ C I + H + + SPD + + S
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-- 1196
Query: 568 DGTIMMWDLASG 579
G + W++A+G
Sbjct: 1197 GGYLKWWNVATG 1208
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/380 (20%), Positives = 146/380 (38%), Gaps = 80/380 (21%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
T N +N S D L+A +D +L++WD+ + ++++ + P ED
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 404 ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
I+ + + ++ GH + FSP +
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------- 490
+ + + LW+ + +GH V V F+P G F ++S D+T R+W
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 491 ---------------------SMDRIQPLRIMAGHLSDVD----------CVRWHINCNY 519
++D I+ L+++AG +D C+ H+ Y
Sbjct: 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--EY 975
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+A G D +++ ++ + +GH+ + + + DG+ + S ED I +W+ +G
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 580 RCVTPLMGHTSCVWTLAY----RFLLLVTNAYLK----ISDKVSTGFLFYSLTIIYFGCA 631
V L H V R L + +K I+ ++ F + T++ CA
Sbjct: 1036 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL--SCA 1092
Query: 632 -SCEGSLLASGSADCTVKLW 650
S + + +S SAD T K+W
Sbjct: 1093 ISSDATKFSSTSADKTAKIW 1112
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 19/283 (6%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D +++VW+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNS-AIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +++ D I++ N GH V
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
+QF G SSS D ++W+ + + H V R + + + + S D T
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGT 1066
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V++W+V +G R F H+ +LS A+S D +S D T +W + L GH
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 589 TSCVWTLAYRF--LLLVT---NAYLKISDKVSTGFLFYSLTII 626
CV A+ +LL T N ++I + VS G L +S I
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWN-VSDGQLLHSCAPI 1168
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
N + + + H V+ F+ G AS D+T +++ + + L + H +V C
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY--MASGDEDGT 570
+ + +YIAT S+DK V++WD ++G+ V + H + + + +A+G D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGC 630
+ +WDL C + GHT+ V +
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRF--------------------------------- 751
Query: 631 ASCEGSLLASGSADCTVKLWDVTTSTK 657
S + LLAS SAD T++LWDV ++ +
Sbjct: 752 -SPDDELLASCSADGTLRLWDVRSANE 777
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 69/340 (20%)
Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
A SQDG +A +D +L+V+ A+ G++ + DI
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFK-AETGEKLL--------------DI------------ 653
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ H V +FS +I + SAD +++W + + Y H+ V F + +
Sbjct: 654 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 477 Y--FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
+ A+ S+D ++W +++ + M GH + V+ R+ + +A+ S+D T+RLWDV
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 535 SSGECVRIFIGHRSMILSLAMSPDG--------RYMASGDE-----DGTIMMWDL-ASGR 580
S R I + LS P+ + A GD+ ++++D+ SG
Sbjct: 773 RSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831
Query: 581 CVTPLMGHTSCVWTL---AYRFLLLVT-----------NAYLKISDKVSTGFLFYSLTII 626
GH S + Y L ++ ++ LK++D G L + ++
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVM 889
Query: 627 YFGCASCEGSLLASGSADCTVKLWDVTTSTK----VLKTE 662
+ S +GS + S D T+++W+ K VLK E
Sbjct: 890 F----SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 9/207 (4%)
Query: 376 KVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434
+V+ AKL +Q V +G+ E I N S + + H+ VY A FS G
Sbjct: 581 EVYQQAKLQAKQEVDNGM------LYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQ 634
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
I S AD T++++ + L+ K H V F+ + A+ S D+ +IW+
Sbjct: 635 RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYI--ATGSSDKTVRLWDVSSGECVRIFIGHRSMILS 552
+ + H V+C + + +++ ATGSSD ++LWD++ EC GH + +
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNH 754
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASG 579
SPD + +AS DGT+ +WD S
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 436 ILSSSADTTIRLWST---KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
+LS S D T+++W+ + VC++G V + F+S+S D+TA+IWS
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQG---TVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--------I 544
D + PL + GH V C + ++ +ATG + +R+W+VS+GE + +
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
H + L SPDG+ + S G I W++ +G
Sbjct: 1181 THGGWVTDLCFSPDGKMLISA--GGYIKWWNVVTG 1213
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 135/349 (38%), Gaps = 46/349 (13%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPREDI 404
T N +N S D L+A +D +LK+WD + ++++ N P+ED+
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 405 ---------------IGPNGRKRSY-----------TLYQGHSGPVYSASFSPLGDFILS 438
I + + + ++ GH + FSP +
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QP 497
+ + + LW+T + + +GH V V F+P G F +SS D+T R+W ++ +
Sbjct: 864 ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKN 923
Query: 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557
+M +VD V N + + D RL + +G +I + + +SP
Sbjct: 924 SAVMLKQ--EVDVV---FQENEVMVLAVDHIRRL-QLINGRTGQIDYLTEAQVSCCCLSP 977
Query: 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTG 617
+Y+A GDE+G I + +L + R H VW + + + SD
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFT---ADEKTLISSSDDAEIQ 1034
Query: 618 FLFYSLTIIYFGCASCE---------GSLLASGSADCTVKLWDVTTSTK 657
+ L F E S L S S D TVK+W++ T K
Sbjct: 1035 VWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNK 1083
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 143/354 (40%), Gaps = 39/354 (11%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED--IIGPNGRKRSYTL 416
S DGS D ++++W+ K+ + + + L+ E D +E+ ++ R L
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNS-AVMLKQEVDVVFQENEVMVLAVDHIRRLQL 954
Query: 417 YQGHSGP--------VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
G +G V SP +I + I + N H VW
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWH 1014
Query: 469 VQFNPQGHYFASSSHDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
+QF SSS D ++W+ +D+ LR GH V R N + + + S D
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRLLKN-SRLLSWSFD 1070
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
TV++W++ +G + F+ H+ +LS +S D +S D T +W + L
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 587 GHTSCVWTLAYRF--LLLVT---NAYLKISDKVSTGFLFYSLTII-------YFG----- 629
GH CV A+ LL T N ++I + VS G L + + + G
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWN-VSNGELLHLCAPLSEEGAATHGGWVTDL 1189
Query: 630 CASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683
C S +G +L S +K W+V T +T +GTN L+ + P T V
Sbjct: 1190 CFSPDGKMLISAGG--YIKWWNVVTGESS-QTFYTNGTN-LKKIHVSPDFKTYV 1239
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
IA+ +DKT++++ +GE + H +L A S D R++A+ D + +W+ +G
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 580 RCVTPLMGHT----SCVWTLAYRFLLLVT---NAYLKISD---KVSTGFLFYSLTIIYFG 629
V H+ C +T + LLL T + +LK+ D K +F +
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 630 CASCEGSLLASGSADCTVKLWDVTTSTK 657
S + LLAS SAD T+KLWD T++ +
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANE 783
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415
C + S D +A D +K+W+ + GE T
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWN-----------SMTGELVHT---------------- 700
Query: 416 LYQGHSGPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP 473
Y HS V F+ +L + S+D ++LW GH V +F+P
Sbjct: 701 -YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 759
Query: 474 QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLS----------DVDCVRWHINCNYI 520
AS S D T ++W S + + + + L+ V C W + I
Sbjct: 760 DDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARI 819
Query: 521 ATGSSDKTVRLWDV-SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+ +K + L+D+ +SG I GH S I SP + +W+ S
Sbjct: 820 MVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSR 878
Query: 580 RCVTPLMGHTSCV 592
V GH S V
Sbjct: 879 SKVADCRGHLSWV 891
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
HNG + C++ S D +L+A G + +++W+++ + + L E T
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT---------- 1181
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
H G V FSP G ++S+ I+ W+
Sbjct: 1182 ----------HGGWVTDLCFSPDGKMLISAGG--YIKWWNV 1210
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHD 484
+++P G + S D IR+W T+ ++ + V +GH V V ++P G+Y AS+S D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 485 RTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---EC 539
T IW + D + + + GH ++V V W + N +AT S DK+V +W+V EC
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTLAY 597
V + H + + P +AS D T+ ++ + C L GH S VW+LA+
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 9/167 (5%)
Query: 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
L +GH V ++SP G+++ S+S D T +W K + C +GH V V +
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWA 114
Query: 473 PQGHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
P G+ A+ S D++ +W +D + + ++ H DV V WH + +A+ S D TV
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 530 RLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
+L+ + C GH S + SLA P G+ +AS +D T+ +W
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 466 VWDVQFNPQGHYFASSSHDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
W + +NP G AS DR RIW + I + GH V V W NY+A+
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 523 GSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG- 579
S D T +W + ECV GH + + S+A +P G +A+ D ++ +W++
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 580 --RCVTPLMGHTS----CVWTLAYRFLLLVTNAY---LKI-----SDKVSTGFLFYSLTI 625
CV+ L HT VW + LL + +Y +K+ D V L +
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 626 IYFGCASCEGSLLASGSADCTVKLW 650
++ G LAS S D TV++W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFN 472
++ H+ V + P + + S+S D T++L+ + + + C +GH VW + F+
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 473 PQGHYFASSSHDRTARIW 490
P G AS S DRT RIW
Sbjct: 204 PSGQRLASCSDDRTVRIW 221
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQF 471
T +GH V S +++P G+ + + S D ++ +W C H V V +
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 472 NPQGHYFASSSHDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
+P AS+S+D T +++ D + GH S V + + + +A+ S D+TV
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 530 RLW 532
R+W
Sbjct: 219 RIW 221
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 45/232 (19%)
Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT------ 399
T N + + + G+L+A D S+ VW++ + + S L
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 400 PREDIIGPNGRKRSYTLY-------------QGHSGPVYSASFSPLGDFILSSSADTTIR 446
P ++++ + LY +GH V+S +F P G + S S D T+R
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 447 LWSTKLNAN--------------LVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIW 490
+W L N +C H+ ++D+ + A++ D R++
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279
Query: 491 ----SMDRIQPLRIMAGHL-----SDVDCVRWHIN-CNYIATGSSDKTVRLW 532
+ D QP + HL DV+CV W+ +A+ S D V W
Sbjct: 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
++ H + S + P ++LS S D T++LW+ + N L ++GH + V V FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
FAS DRT ++WS+ + P + G V+ V ++ + Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
WD + CV GH S + P + SG EDGT+ +W+ ++ + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 592 VWTLA 596
W +A
Sbjct: 273 SWCIA 277
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ S V F P ++L++ + +W+ + + + PV +F + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
+ S D R+++ + + + H + + H Y+ +GS D TV+LW+ +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
+ + F GH ++ +A +P D ASG D T+ +W L S T G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
+ Y L ++T + +KI D K L ++ + F ++ SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
D T+K+W+ +T KV KT G R + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 346 TFINTHNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
TF + + C + + +D S A G D ++KVW LGQ +TP
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQ------------STP---- 175
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
++TL G V + PL D +++++S D TI++W + + + +GH
Sbjct: 176 --------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYI 520
V F+P S S D T +IW+ + + + L C+ H NYI
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Query: 521 ATG 523
A+G
Sbjct: 288 ASG 290
>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain
Length = 148
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 62 DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFR 121
+ P Y YS L++W SSL++YK EL +++YP+FI+ F++LVAK + AR FF+ F
Sbjct: 5 NAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFS 63
Query: 122 EDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS-- 179
D + H ++ +L V S H++E E A + + K I + + + LLL +L++ +S
Sbjct: 64 PDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIG 123
Query: 180 -TKMLGIINERIN 191
+ ++ +IN+ ++
Sbjct: 124 GSLIISVINQHLD 136
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
++ H + S + P ++LS S D T++LW+ + N L ++GH + V V FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
FAS DRT ++WS+ + P + G V+ V ++ + Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
WD + CV GH S + P + SG EDGT+ +W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ S V F P ++L++ + LW+ + + + PV +F + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
+ S D R+++ + + + H + + H Y+ +GS D TV+LW+ +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
+ + F GH ++ +A +P D ASG D T+ +W L S T G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
+ Y L ++T + +KI D K L ++ + F ++ SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
D T+K+W+ +T KV KT G R + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 346 TFINTHNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
TF + + C + + +D S A G D ++KVW LGQ
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQST----------------- 174
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
PN +TL G V + PL D +++++S D TI++W + + + +GH
Sbjct: 175 --PN-----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYI 520
V F+P S S D T +IW+ + + + L C+ H NYI
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Query: 521 ATG 523
A+G
Sbjct: 288 ASG 290
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
++ H + S + P ++LS S D T++LW+ + N L ++GH + V V FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
FAS DRT ++WS+ + P + G V+ V ++ + Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
WD + CV GH S + P + SG EDGT+ +W+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ S V F P ++L++ + LW+ + + + PV +F + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
+ S D R+++ + + + H + + H Y+ +GS D TV+LW+ +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
+ + F GH ++ +A +P D ASG D T+ +W L S T G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
+ Y L ++T + +KI D K L ++ + F ++ SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
D T+K+W+ +T KV KT G R + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 346 TFINTHNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
TF + + C + + +D S A G D ++KVW LGQ
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQST----------------- 174
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
PN +TL G V + PL D +++++S D TI++W + + + +GH
Sbjct: 175 --PN-----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYI 520
V F+P S S D T +IW+ + + + L C+ H NYI
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Query: 521 ATG 523
A+G
Sbjct: 288 ASG 290
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
++ H + S + P ++LS S D T++LW+ + N L ++GH + V V FNP+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 476 -HYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRL 531
FAS DRT ++WS+ + P + G V+ V ++ + Y+ T S D T+++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
WD + CV GH S + P + SG EDGT+ +W+ ++ + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 592 VWTLA 596
W +A
Sbjct: 273 SWCIA 277
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)
Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
+ S V F P ++L++ + LW+ + + + PV +F + +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
+ S D R+++ + + + H + + H Y+ +GS D TV+LW+ +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 537 GECV-RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVW 593
+ + F GH ++ +A +P D ASG D T+ +W L S T G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 594 TLAYRFL----LLVT---NAYLKISD---KVSTGFLFYSLTIIYFGCASCEGSLLASGSA 643
+ Y L ++T + +KI D K L ++ + F ++ SGS
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 644 DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 678
D T+K+W+ +T KV KT G R + T PT
Sbjct: 249 DGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 346 TFINTHNGLNCASIS-QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
TF + + C + + +D S A G D ++KVW LGQ +TP
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQ------------STP---- 175
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGH 462
++TL G V + PL D +++++S D TI++W + + + +GH
Sbjct: 176 --------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYI 520
V F+P S S D T +IW+ + + + L C+ H NYI
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Query: 521 ATG 523
A+G
Sbjct: 288 ASG 290
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GHS V S G F LS S D T+RLW + GH V V F+
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
S S D+T ++W+ + + H V CVR+ N + I + DK V++W++
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
++ + IGH + ++ +SPDG ASG +DG M+WDL G+ + L G
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 460 KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ-----PLRIMAGHLSDVDCVRW 513
KGHN V + PQ S+S D+T +W + R + P R + GH V V
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
+ + +GS D T+RLWD+++G R F+GH +LS+A S D R + SG D TI +
Sbjct: 95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRF-------------------LLLVTNAYLKISDKV 614
W+ G C + + W RF + + N LK +
Sbjct: 155 WNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
TG+L ++T+ S +GSL ASG D LWD+
Sbjct: 214 HTGYL-NTVTV------SPDGSLCASGGKDGQAMLWDL 244
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
+ I + S DKT+ +W ++ E R GH + + +S DG++ SG DGT+
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
+WDL +G +GHT V ++A+ S
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAF----------------------------------S 137
Query: 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683
+ + SGS D T+KLW+ K +++S + + ++ P S P+
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPI 187
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDM 380
H G LN ++S DGSL A G D +WD+
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GHS V S G F LS S D T+RLW + GH V V F+
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 478 FASSSHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCN--YIATGSSDKTVRLWDV 534
S S D+T ++W+ + + H V CVR+ N + I + DK V++W++
Sbjct: 120 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
++ + IGH + ++ +SPDG ASG +DG M+WDL G+ + L G
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 460 KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQ-----PLRIMAGHLSDVDCVRW 513
KGHN V + PQ S+S D+T +W + R + P R + GH V V
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 71
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
+ + +GS D T+RLWD+++G R F+GH +LS+A S D R + SG D TI +
Sbjct: 72 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 131
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRF-------------------LLLVTNAYLKISDKV 614
W+ G C + + W RF + + N LK +
Sbjct: 132 WNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 615 STGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
TG+L ++T+ S +GSL ASG D LWD+
Sbjct: 191 HTGYL-NTVTV------SPDGSLCASGGKDGQAMLWDL 221
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
IS DG G D +L++WD+ TT R +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLT--------------TGTTTRR--------------FV 102
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGH- 476
GH+ V S +FS I+S S D TI+LW+T + V + H+ V V+F+P
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 477 -YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS 535
S D+ ++W++ + GH ++ V + + A+G D LWD++
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
G+ + G +I +L SP+ RY +I +WDL
Sbjct: 223 EGKHLYTLDGG-DIINALCFSPN-RYWLCAATGPSIKIWDL 261
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
+ I + S DKT+ +W ++ E R GH + + +S DG++ SG DGT+
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
+WDL +G +GHT V ++A+ S
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAF----------------------------------S 114
Query: 633 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 683
+ + SGS D T+KLW+ K +++S + + ++ P S P+
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPI 164
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDM 380
H G LN ++S DGSL A G D +WD+
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 36/250 (14%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+++++ + D IR++ + L+ GH+ VW +++ G S S DRT R+W +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
+ + GH S V C + + N YI TGS D T+ +W + GE
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V + GH + + + +S G + SG D T+++WD+A +C+ L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 589 TSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSLT--IIYFGCASCEGSLLASG 641
T +++ Y R + + ++I D + G L Y+L G L S
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWD-LENGELXYTLQGHTALVGLLRLSDKFLVSA 368
Query: 642 SADCTVKLWD 651
+AD +++ WD
Sbjct: 369 AADGSIRGWD 378
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
GH G V++ ++ G ++S S D T+R+W K ++GHN V D+
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPL------------RIMAGHLSDVDCVRW 513
Y + S D T +W + + PL ++ GH + V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
H N + +GS D T+ +WDV+ +C+ I GH I S + + S D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNA 606
WDL +G L GHT+ V L LV+ A
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLSDKFLVSAA 369
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
F ++ H+G A G ++ G +D +++VWD+ K + +G N T D
Sbjct: 154 FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLD 210
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGH 462
I+ K +I++ S D T+ +W +++ + + H
Sbjct: 211 IVEYKNIK-----------------------YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 463 NYPVWDVQFNPQ----------------------GHYFASSSHDRTARIWSMDRIQPLRI 500
+YP+ V P+ G+ S S+D T +W + + + L I
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
++GH + + + S D T+R+WD+ +GE GH +++ L +S +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--K 363
Query: 561 YMASGDEDGTIMMWD 575
++ S DG+I WD
Sbjct: 364 FLVSAAADGSIRGWD 378
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 490 WSMDRIQPLRI-MAGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR 547
W + P R + GH + V C+++ NY+ TG+ DK +R++D + + + GH
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592
+ +L + G + SG D T+ +WD+ G C GH S V
Sbjct: 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604
GH + +++ D Y+ +G +D I ++D + + + L GH VW L Y
Sbjct: 119 GHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY------- 170
Query: 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
G +L SGS D TV++WD+
Sbjct: 171 ----------------------------AHGGILVSGSTDRTVRVWDI 190
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 28/213 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
GH G V++ ++ G ++S S D T+R+W K ++GHN V D+
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPL------------RIMAGHLSDVDCVRW 513
Y + S D T +W + + PL ++ GH++ V V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
H N + +GS D T+ +WDV+ +C+ I GH I S + + S D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNA 606
WDL +G + L GHT+ V L LV+ A
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAA 369
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 36/250 (14%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+++++ + D IR++ + L+ GH+ VW +++ G S S DRT R+W +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
+ + GH S V C + + N YI TGS D T+ +W + GE
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V + GH + + + +S G + SG D T+++WD+A +C+ L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 589 TSCVWTLAY-----RFLLLVTNAYLKISDKVSTGFLFYSLT--IIYFGCASCEGSLLASG 641
T +++ Y R + + ++I D + G L Y+L G L S
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWD-LENGELMYTLQGHTALVGLLRLSDKFLVSA 368
Query: 642 SADCTVKLWD 651
+AD +++ WD
Sbjct: 369 AADGSIRGWD 378
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
F ++ H+G A G ++ G +D +++VWD+ K + +G N T D
Sbjct: 154 FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLD 210
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGH 462
I+ K +I++ S D T+ +W +++ + + H
Sbjct: 211 IVEYKNIK-----------------------YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 463 NYPVWDVQFNPQ----------------------GHYFASSSHDRTARIWSMDRIQPLRI 500
+YP+ V P+ G+ S S+D T +W + +++ L I
Sbjct: 248 DYPL--VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
++GH + + + S D T+R+WD+ +GE + GH +++ L +S +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K 363
Query: 561 YMASGDEDGTIMMWD 575
++ S DG+I WD
Sbjct: 364 FLVSAAADGSIRGWD 378
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 490 WSMDRIQPLRI-MAGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR 547
W + P R + GH++ V C+++ NY+ TG+ DK +R++D + + + GH
Sbjct: 105 WYNPKFVPQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592
+ +L + G + SG D T+ +WD+ G C GH S V
Sbjct: 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604
GH + +++ D Y+ +G +D I ++D + + + L GH VW L Y
Sbjct: 119 GHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY------- 170
Query: 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
G +L SGS D TV++WD+
Sbjct: 171 ----------------------------AHGGILVSGSTDRTVRVWDI 190
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 9/191 (4%)
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
+K+S + H+ + + SF+ IL++S D T LW + L + GH V +
Sbjct: 146 KKKSVAM---HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202
Query: 470 QFNPQ--GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK 527
P G+ F S D+ A +W M Q ++ H SDV+ VR++ + + A+GS D
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA 262
Query: 528 TVRLWDVSSGECVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
T RL+D+ + V I+ S+I S+ S GR + +G D TI +WD+ G V+
Sbjct: 263 TCRLYDLRADREVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 585 LMGHTSCVWTL 595
L GH + V TL
Sbjct: 322 LFGHENRVSTL 332
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 28/250 (11%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKG----HNYPVWDVQFNPQGHY 477
V + +++P G I D ++ N N+ K H + F
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVS 535
++S D T +W ++ Q L+ GH +DV C+ + N +G DK +WD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV------TPLMGHT 589
SG+CV+ F H S + S+ P G ASG +D T ++DL + R V + + G +
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 590 SCVWTLAYRFLLLVTNAY-LKISDKVSTGFLFYSLTIIYFGC--------ASCEGSLLAS 640
S ++L+ R L N Y + + D L S I FG S +G+ S
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWD-----VLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 641 GSADCTVKLW 650
GS D T+++W
Sbjct: 344 GSWDHTLRVW 353
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTT-----PREDIIGP---NGRK 411
S+ G+ G D VWDM Q V + E+D P D +
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Query: 412 RSYTLYQGHSGPVYS----------ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
R Y L +YS FS G + + D TI +W + + G
Sbjct: 265 RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
H V ++ +P G F S S D T R+W+
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
++ R + GH + V C+ W + I + S D V +WD + + +++ A
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 555 MSPDGRYMASGDEDGTIMMWDL 576
+P G +A G D ++ L
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPL 135
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + +LS+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
G C GH S C + F +A ++ D + + YS I G S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
G LL +G D +WD
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + H ++I S++ S GR + +G +D +WD L GH
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+G V S S +P +S + D + +LW + + GH + + F P G+ FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 480 SSSHDRTARIWSMDRIQPL------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ S D T R++ + Q L I+ G S V + + + G D +WD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWD 298
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ + GH + + L ++ DG +A+G D + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + +LS+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
G C GH S C + F +A ++ D + + YS I G S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
G LL +G D +WD
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + H ++I S++ S GR + +G +D +WD L GH
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+G V S S +P +S + D + +LW + + GH + + F P G+ FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 480 SSSHDRTARIWSMDRIQPL------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ S D T R++ + Q L I+ G S V + + + G D +WD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWD 298
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ + GH + + L ++ DG +A+G D + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|B Chain B, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|C Chain C, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|D Chain D, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|E Chain E, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|F Chain F, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|G Chain G, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|H Chain H, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
Length = 156
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 42 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
+ + + P++S +++ D P Y++ YS L+ + SLD ++ EL + YP+F+H +
Sbjct: 3 VAVEDQPDVSAVLSAYNQQGD-PTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXY 61
Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
++LV H EA++FF F D E + DL+ L + H + E R SK ++
Sbjct: 62 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLR 121
Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERI 190
I + SY+LL ++L + Q+ ++ I+ E +
Sbjct: 122 ISRDSYQLLKRHLQEKQNNQIWNIVQEHL 150
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 48 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
G C GH S C + F +A ++ D + + YS I G S
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 286
Query: 633 C----EGSLLASGSADCTVKLWDV 652
G LL +G D +WD
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDA 310
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 152 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 210
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + H ++I S++ S GR + +G +D +WD L GH
Sbjct: 271 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+G V S S +P +S + D + +LW + + GH + + F P G+ FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 480 SSSHDRTARIWSMDRIQPL------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ S D T R++ + Q L I+ G S V + + + G D +WD
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWD 309
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ + GH + + L ++ DG +A+G D + +W+
Sbjct: 310 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 234
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 235 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 293
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
G C GH S C + F +A ++ D + + YS I G S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
G LL +G D +WD
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 7/174 (4%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
GH+G + F L D I++SS DTT LW + + GH V + P
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
F S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 538 ECVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + + H ++I S++ S GR + +G +D +WD L GH
Sbjct: 259 QELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+G V S S +P +S + D + +LW + + GH + + F P G+ FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 480 SSSHDRTARIWSMDRIQPL------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ S D T R++ + Q L I+ G S V + + + G D +WD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWD 298
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ + GH + + L ++ DG +A+G D + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
I P GR R+ +GH +Y+ + ++S+S D + +W + +
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
+ V + P G+Y A D I+++ ++ R +AGH + C R+ ++ N
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I T S D T LWD+ +G+ F GH ++SL+++PD R SG D + +WD+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTS-----CVWTLAYRFLLLVTNAYLKISD-KVSTGFLFYSLTIIYFGCAS 632
G C GH S C + F +A ++ D + + YS I G S
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 633 C----EGSLLASGSADCTVKLWDV 652
G LL +G D +WD
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G + F + I++SS DTT LW + + GH V + P F
Sbjct: 141 GHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
S + D +A++W + + GH SD++ + + N N ATGS D T RL+D+ + +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 539 CVRIFIGHRSMIL---SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + H ++I S++ S GR + +G +D +WD L GH
Sbjct: 260 ELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
H+G V S S +P +S + D + +LW + + GH + + F P G+ FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 480 SSSHDRTARIWSMDRIQPL------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ S D T R++ + Q L I+ G S V + + + G D +WD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWD 298
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ + GH + + L ++ DG +A+G D + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S++ D L G D+S K+WD+ RE + ++++T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDV--------------------REGMC-----RQTFT-- 223
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY--PVWDVQFNPQG 475
GH + + F P G+ + S D T RL+ + + L+ Y N + V F+ G
Sbjct: 224 -GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
+ D +W + ++AGH + V C+ + +ATGS D +++W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
QGHSG VYS ++P ++I+S+S D + +W+ + K H V + F P G
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 478 FASSSHDRTARIWSM------DRIQPL-RIMAGHLSDVDCVRWHINCNYIA-------TG 523
A D I+++ D P+ R++ GH + +C Y+ TG
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------YASSCQYVPDQETRLITG 176
Query: 524 SSDKTVRLWDVSSGECVRIF-----IGHRSMILSLAM-SPDGRYMASGDEDGTIMMWDL- 576
S D+T LWDV++G+ + IF GH + +LSL++ S + SG D T+ +WDL
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 577 ASGRCVTPLMGH 588
+ R V GH
Sbjct: 237 ITSRAVRTYHGH 248
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
S + RTA ++ + R + GH V + W N+I + S D + +W+ + +
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHT 589
H ++ A +P+G+ +A G D +++L+S R +T G+
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 590 SCVWTLAYRFLLLVTNA--YLKISDKVSTG---FLF-------YSLTIIYFGCASCEGSL 637
S + + L+T + + V+TG +F ++ ++ S ++
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 638 LASGSADCTVKLWDVTTSTKVLKT 661
SGS D TV+LWD+ +++ ++T
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRT 244
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY------KGHNYP 465
R+ Y GH G + S F P G + S D T RL+ + L Y + P
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 466 -VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYI 520
V V F+ G + + +W + + + H + C+ + + +
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550
TGS DK +++W F GHR ++
Sbjct: 360 CTGSWDKNLKIW---------AFSGHRKIV 380
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 346 TFINTHNG-LNCASISQDGSLVAGGFSDSSLKVW 378
T N+H G ++C +S DGS + G D +LK+W
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
+GH V S S SSS D IRLW + + W + F+P Y
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
A+ +H I+ ++ + + + + + + Y+A+G+ D + ++D+++G
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ + GH I SL SPD + + + +DG I ++D+ L GH S V +A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 28/262 (10%)
Query: 418 QGHSGPVYSASFSPL----GDFILSSSADTTIRLWSTK-----LNANLVCYKGHNYPVWD 468
Q H ++S ++ + +++ S D +++W + L +L +GH V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL---EGHQLGVVS 85
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
V + ASSS D R+W ++ + ++ + D + + + Y+ATG+
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
V ++ V SG+ ILS+A SPDG+Y+ASG DG I ++D+A+G+ + L GH
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 589 TSCVWTLAYR--FLLLVT---NAYLKISD-------KVSTGFLFYSLTIIYFGCASCEGS 636
+ +L + LLVT + Y+KI D +G + L + + C + +
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF--CP--DDT 261
Query: 637 LLASGSADCTVKLWDVTTSTKV 658
S S+D +VK+WDV T T V
Sbjct: 262 HFVSSSSDKSVKVWDVGTRTCV 283
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 2/179 (1%)
Query: 421 SGPV--YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
+GPV ++ +FSP ++ + + + ++ + + + ++P G Y
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
AS + D I+ + + L + GH + + + + + T S D ++++DV
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
GH S +L++A PD + S D ++ +WD+ + CV H VW + Y
Sbjct: 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
+ +I G K+ Y+L + S ++SP G ++ S + D I ++ L +
Sbjct: 145 KVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
GH P+ + F+P ++S D +I+ + ++GH S V V + + +
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
+ SSDK+V++WDV + CV F H+ + + + +G + S +D I ++D
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQF 471
H + S ++ P + + S D+T+ +W+ + +A+ L +GH V V +
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 472 NPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK 527
+ G+Y A+ S D++ IW D + + ++ H DV V WH + +A+ S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 528 TVRLWD--VSSGECVRIFIGHRSMILSLAMSP-DGRY-MASGDEDGTIMMW 574
TVR+W ECV + GH + S +G + + SG +D T+ +W
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVW 467
+S LY+ ++S FS + + S D I+L S K + +++ H +
Sbjct: 8 KSLKLYKE---KIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 468 DVQFNPQGHYFASSSHDRTARIW----SMDR---IQPLRIMAGHLSDVDCVRWHINCNYI 520
V + P A+ S D T IW S DR + L I+ GH ++V V W + Y+
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 521 ATGSSDKTVRLWDVS-SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
AT S DK+V +W+ SG EC+ + H + + P +AS D T+ +W
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 577 ASG--RCVTPLMGHTSCVWT 594
CV L GH VW+
Sbjct: 183 YDDDWECVAVLNGHEGTVWS 202
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 45/237 (18%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
SL+A G DS++ +W AK + D T D++ + +GH
Sbjct: 71 SLLAAGSFDSTVSIW--AK----------EESADRTFEMDLLA---------IIEGHENE 109
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFA 479
V ++S G ++ + S D ++ +W T + + + H+ V V ++P A
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 480 SSSHDRTARIWS--MDRIQPLRIMAGH-----LSDVDCVRWHINCNYIATGSSDKTVRLW 532
SSS+D T RIW D + + ++ GH SD D + +GS D TVR+W
Sbjct: 170 SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE---GVFRLCSGSDDSTVRVW 226
Query: 533 --------DVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
D C I H+ + ++A +G +AS DG + +++ G
Sbjct: 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQF 471
++ Q HS V + P + SSS D T+R+W + + C GH VW F
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDF 205
Query: 472 NPQGHYF--ASSSHDRTARIWSM-----DRIQPLRIMA----GHLSDVDCVRWHINCNYI 520
+ F S S D T R+W D Q A H V V W N I
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLI 264
Query: 521 ATGSSDKTVRLWDVSSGECVRIFI------GHRSMILSLAMSPDGR-YMASGDEDGTIMM 573
A+ +D + +++ GE ++F G + + + +G+ +A+G +DG +
Sbjct: 265 ASVGADGVLAVYEEVDGEW-KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 574 WDL 576
W L
Sbjct: 324 WSL 326
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+ V + S F +SSS D T+RLW + + GH V+ V F+P
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRW----------HINCNYIATGS 524
S+ +R ++W++ + + + H V CVR+ Y A+
Sbjct: 134 LSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
D +++W+ ++ + F H S + L++SP+G+Y+A+G +D +++WD+
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 32/202 (15%)
Query: 480 SSSHDRTARIWSMDRIQ-------PLRIMAGHLSDV-DCVRWHINCNYIATGSSDKTVRL 531
S S D+T IW + + P + + GH V D NC I++ S DKT+RL
Sbjct: 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRL 102
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------- 581
WD+ +G + F+GH+S + S+A SPD R + S + I +W++ G C
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENH 161
Query: 582 --------VTPLMGHTSCVWTLAYRFLLLVTNAYLKISD---KVSTGFLFYSLTIIYFGC 630
+P+M + V A F + + LK+ + ++ F + + +
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI 221
Query: 631 ASCEGSLLASGSADCTVKLWDV 652
S G +A+G D + +WD+
Sbjct: 222 -SPNGKYIATGGKDKKLLIWDI 242
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW----- 467
+Y + GH VYS +FSP ILS+ A+ I+LW+ + N+ W
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169
Query: 468 -------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
+ P YFAS D ++W+ + Q H S+V+ + N YI
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYI 228
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
ATG DK + +WD+ + + S I +A +P +++A G + G
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGV 278
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKL 383
YTF + +N SIS +G +A G D L +WD+ L
Sbjct: 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
+ +G YTL GH G V S SF ++S S D T ++W K + + + HN
Sbjct: 88 LFATSGEDPLYTLI-GHQGNVCSLSFQD--GVVISGSWDKTAKVW--KEGSLVYNLQAHN 142
Query: 464 YPVWD---VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
VWD V F+ + F ++S D+T ++W D++ ++ +G +DV ++ +
Sbjct: 143 ASVWDAKVVSFSE--NKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGHF 198
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+ S+D ++L D +G+ +R + GH S + + + P+G ++ G ED T+ +W +G
Sbjct: 199 ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
+A+ S D TVRLW + + + S+ + + G +D I L +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 580 RCVTPL---MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSL-----TIIYFGCA 631
PL +GH V +L+++ ++++ ++ K + G L Y+L ++
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVV 151
Query: 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 676
S + + SAD T+KLW + KV+KT + +R L +
Sbjct: 152 SFSENKFLTASADKTIKLW---QNDKVIKTFSGIHNDVVRHLAVV 193
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 420 HSGPVYSASFSPL-GDFILSSSADTTIRLWSTK-------LNANLVCYKG------HNYP 465
H G + + P+ G ++LS +D I L+ + VC G H Y
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 466 VWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVDCVRWHINC 517
V VQ+ P F SSS D+T ++W + +Q + + H+S V +C
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK----HC 157
Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDGTIMMWDL 576
+A G+ V+L D+ SG C I GHR IL+++ SP Y +A+ D + +WD+
Sbjct: 158 -LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 577 --ASGRCVTPLMGH 588
ASG C+ L H
Sbjct: 217 RRASG-CLITLDQH 229
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 416 LYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLV----------------C 458
+ QGH + + S+SP D+IL++ SAD+ ++LW + + +
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD--VDCVRWHIN 516
HN V + F G + + D R+W+ + + G + + +++ ++
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 517 CN------YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
C ++ GS T+ ++ V SGE + + GH + + + + SG D
Sbjct: 301 CGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357
Query: 571 IMMW 574
I+ W
Sbjct: 358 ILAW 361
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 23/176 (13%)
Query: 365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY--TLYQGHSG 422
++A +DS +K+WD+ + ++ + NG+K + H+G
Sbjct: 201 ILATASADSRVKLWDVRRASGCLIT--------------LDQHNGKKSQAVESANTAHNG 246
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWS------TKLNANLVCYKGHNYPVWDVQFNPQGH 476
V F+ G +L+ D +RLW+ T +N VC + V
Sbjct: 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE 306
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
F + T ++++ + + ++ GH VDC + N + +GS D + W
Sbjct: 307 -FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 227 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 346 LHVWDLS 352
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N K S+T+ H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 265 NTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ VQ++P ASS DR +W + +I + L I GH + +
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 384 FSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
+++ +A S +D +M+WD + P + HT+ V L++
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 285
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
N Y + +LA+GSAD TV LWD+
Sbjct: 286 -NPYSEF--------------------------ILATGSADKTVALWDL 307
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 335 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 380
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNA 454
+ S++P +I+ S S D +++W N
Sbjct: 381 ISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 228
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 229 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 348 LHVWDLS 354
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N K S+T+ H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 267 NTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 325
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ VQ++P ASS DR +W + +I + L I GH + +
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 385
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 386 FSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
+++ +A S +D +M+WD + P + HT+ V L++
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 287
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
N Y + +LA+GSAD TV LWD+
Sbjct: 288 -NPYSEF--------------------------ILATGSADKTVALWDL 309
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 337 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 382
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+ S++P +I+ S S D +++W N
Sbjct: 383 ISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
P+G + +GH Y S++P L ++LS+S D TI LW ++A +
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 230
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
+ GH V DV ++ F S + D+ IW + +P + H ++V+C+ +
Sbjct: 231 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
+ +I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 571 IMMWDLA 577
+ +WDL+
Sbjct: 350 LHVWDLS 356
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N K S+T+ H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 269 NTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 327
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ VQ++P ASS DR +W + +I + L I GH + +
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 387
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 388 FSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
QP + GH + + W+ N N Y+ + S D T+ LWD+++ + IF GH
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLV 603
+++ +A S +D +M+WD + P + HT+ V L++
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF------ 289
Query: 604 TNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDV 652
N Y + +LA+GSAD TV LWD+
Sbjct: 290 -NPYSEF--------------------------ILATGSADKTVALWDL 311
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G+ E T ED G ++ GH+
Sbjct: 339 TILASSGTDRRLHVWDLSKIGE---------EQSTEDAED-----GPPELLFIHGGHTAK 384
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNA 454
+ S++P +I+ S S D +++W N
Sbjct: 385 ISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 416
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S++P L +LS+S D TI LW K+
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH V DV ++ F S + D+ IW S + +P + H ++V+C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 572 MMWDLA 577
+WDL+
Sbjct: 343 NVWDLS 348
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N K S+++ H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 261 NTSKPSHSV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 319
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ VQ++P ASS DR +W + +I + L I GH + +
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 380 FSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 34/188 (18%)
Query: 498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS--------SGEC---VRIFIG 545
+ I H +V+ R+ N IAT + V ++D + SGEC +R+ G
Sbjct: 117 IEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR-G 175
Query: 546 HRSMILSLAMSPD-GRYMASGDEDGTIMMWDLAS----GRCV---TPLMGHTSCVWTLAY 597
H+ L+ +P+ ++ S +D TI +WD+++ G+ V T GHT+ V +++
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 235
Query: 598 RFL-------------LLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSAD 644
L L++ + + K S ++ + +LA+GSAD
Sbjct: 236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 645 CTVKLWDV 652
TV LWD+
Sbjct: 296 KTVALWDL 303
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
+++A +D L VWD++K+G++ +P + GP ++ GH+
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEE-----------QSPEDAEDGP---PELLFIHGGHTAK 376
Query: 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+ S++P +++ S S D +++W N
Sbjct: 377 ISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
+ S ++ G+++ ++ ++LW + L H+ V + +N + SS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 205
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
R+ I D R+ + ++GH +V +RW + ++A+G +D V +W + GE
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
++ F H+ + ++A P +A+G D I +W++ SG C++ + H+ S
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
+W+ Y+ L+ LV Y K+++ SLT+ S +G+ +
Sbjct: 326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 379
Query: 639 ASGSADCTVKLW 650
AS +AD T++LW
Sbjct: 380 ASAAADETLRLW 391
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 436 ILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+L+ + D ++ LWS L+ + + V + +G+Y A + ++W +
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILS 552
+ + LR M H + V + W N +++GS + DV E V GH +
Sbjct: 178 QQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASG 579
L +PDGR++ASG D + +W A G
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVWPSAPG 262
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 584 PLMGHTSCVWTLAYRFLLLVTNAY--------LKISDKVSTGFLFYSLTIIYFGCASCEG 635
+ H++ V +L++ +L + + +++++ +S + A +G
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DG 242
Query: 636 SLLASGSADCTVKLW 650
LASG D V +W
Sbjct: 243 RHLASGGNDNLVNVW 257
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499
A + +W A + KGH V + +P G AS++ D T R+W + P R
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
+ S ++ G+++ ++ ++LW + L H+ V + +N + SS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 216
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
R+ I D R+ + ++GH +V +RW + ++A+G +D V +W + GE
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 276
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
++ F H+ + ++A P +A+G D I +W++ SG C++ + H+ S
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
+W+ Y+ L+ LV Y K+++ SLT+ S +G+ +
Sbjct: 337 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 390
Query: 639 ASGSADCTVKLW 650
AS +AD T++LW
Sbjct: 391 ASAAADETLRLW 402
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 436 ILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+L+ + D ++ LWS L+ + + V + +G+Y A + ++W +
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILS 552
+ + LR M H + V + W N +++GS + DV E V GH +
Sbjct: 189 QQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 246
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASG 579
L +PDGR++ASG D + +W A G
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAPG 273
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 584 PLMGHTSCVWTLAYRFLLLVTNAY--------LKISDKVSTGFLFYSLTIIYFGCASCEG 635
+ H++ V +L++ +L + + +++++ +S + A +G
Sbjct: 195 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DG 253
Query: 636 SLLASGSADCTVKLW 650
LASG D V +W
Sbjct: 254 RHLASGGNDNLVNVW 268
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499
A + +W A + KGH V + +P G AS++ D T R+W + P R
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S+ S L +LS+S D T+ LW K+
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH+ V DV ++ F S + D+ IW S +P ++ H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
+WDL+
Sbjct: 345 NVWDLS 350
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N + L H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ V ++P ASS DR +W + +I + L I GH + +
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 511 VRWHINCNY-IATGSSDKTVRLW 532
W+ N + I + S D ++W
Sbjct: 382 FSWNPNEPWVICSVSEDNIXQIW 404
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 284 DKAINATAKTSRL------EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA 337
D N T+K S L E N +S P + LA V L +L+ ++H +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
+ F + HN +++A +D L VWD++K+G++ + +
Sbjct: 318 HKDEI-FQVHWSPHNE----------TILASSGTDRRLNVWDLSKIGEEQSAEDAE---- 362
Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+G ++ GH+ + S++P +++ S S D ++W N
Sbjct: 363 ----------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
P+G +GH Y S+ S L +LS+S D T+ LW K+
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
+ GH+ V DV ++ F S + D+ IW S +P ++ H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
+I ATGS+DKTV LWD+ + + + F H+ I + SP +AS D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
+WDL+
Sbjct: 345 NVWDLS 350
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTK-LNANLVCYKGHNYP 465
N + L H+ V SF+P +FIL++ SAD T+ LW + L L ++ H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 466 VWDVQFNPQGH-YFASSSHDRTARIWSMDRI--------------QPLRIMAGHLSDVDC 510
++ V ++P ASS DR +W + +I + L I GH + +
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 511 VRWHINCNY-IATGSSDKTVRLWDVS 535
W+ N + I + S D +++W ++
Sbjct: 382 FSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 46/203 (22%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
+ GH + + W+ N + ++ + S D TV LWD+++G + IF GH +++
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYRFLLLVTNAYL 608
+A S +D +M+WD S P + HT+ V L++ N Y
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF-------NPYS 287
Query: 609 KISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 668
+ +LA+GSAD TV LWD+ L T E S +
Sbjct: 288 EF--------------------------ILATGSADKTVALWDLRNLKLKLHTFE-SHKD 320
Query: 669 RLRSLKTLPTKSTPVYSLQFSRR 691
+ + P T + S RR
Sbjct: 321 EIFQVHWSPHNETILASSGTDRR 343
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 284 DKAINATAKTSRL------EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA 337
D N T+K S L E N +S P + LA V L +L+ ++H +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
+ F + HN +++A +D L VWD++K+G++ + +
Sbjct: 318 HKDEI-FQVHWSPHNE----------TILASSGTDRRLNVWDLSKIGEEQSAEDAE---- 362
Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN 453
+G ++ GH+ + S++P +++ S S D +++W N
Sbjct: 363 ----------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----DVDCVRWHI 515
GH P+ V++N +G S S D +A +W + L + GH DVDC
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF---- 85
Query: 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562
Y TGS+D +++LWDVS+G+CV + + + SP G Y
Sbjct: 86 -TKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYF 130
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
GH+G ++S + ++ SAD +I+LW N V PV V+F+P G+YF
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 479 AS-----SSHDRTARIWSMDRI-----------QPLRIMAGH--LSDVDCVRWHINCNYI 520
+ + + I+ ++R +P+ + H L W YI
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 521 ATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
G D + +DVS+ E V H I + SPD Y + D + D+++
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
+ GH + V+++ + + + S D + +W +GE + GH I S+ + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 561 YMASGDEDGTIMMWDLASGRCV 582
Y +G D +I +WD+++G+CV
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCV 109
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 30/169 (17%)
Query: 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDR 485
A +S G +I++ D I + N V H + D+QF+P YF +SS D
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI---------ATGSSDKTVRLWDVSS 536
+ + + +Q L+ + DC +N I G K V +
Sbjct: 241 NSFLVDVSTLQVLKKY-----ETDCP---LNTAVITPLKEFIILGGGQEAKDVTTTSANE 292
Query: 537 GECVRIFI------------GHRSMILSLAMSPDGRYMASGDEDGTIMM 573
G+ F GH + ++A+SP G ASG EDG I +
Sbjct: 293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 34/109 (31%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVT 604
GH + + + +G + S +D + +W +G + L GHT +W++
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID-------- 81
Query: 605 NAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGSADCTVKLWDVT 653
C +GSAD ++KLWDV+
Sbjct: 82 --------------------------VDCFTKYCVTGSADYSIKLWDVS 104
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
+ S ++ G+++ ++ ++LW + L H+ V + +N + SS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSG 125
Query: 484 DRTARIWSMD-RIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC- 539
R+ I D R+ + ++GH +V +RW + ++A+G +D V +W + GE
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185
Query: 540 ---VRIFIGHRSMILSLAMSP-DGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---S 590
++ F H+ + ++A P +A+G D I +W++ SG C++ + H+ S
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 591 CVWTLAYRFLL---------LVTNAY---LKISDKVSTGFLFYSLTIIYFGCASCEGSLL 638
+W+ Y+ L+ LV Y K+++ SLT+ S +G+ +
Sbjct: 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM------SPDGATV 299
Query: 639 ASGSADCTVKLW 650
AS +AD T++LW
Sbjct: 300 ASAAADETLRLW 311
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 436 ILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
+L+ + D ++ LWS L+ + + V + +G+Y A + ++W +
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILS 552
+ + LR M H + V + W N +++GS + DV E V GH +
Sbjct: 98 QQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASG 579
L +PDGR++ASG D + +W A G
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPG 182
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 526 DKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
D +V LW SSG+ +++ + I S+A +G Y+A G + +WD+ + +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 584 PLMGHTSCVWTLAYRFLLLVTNAY--------LKISDKVSTGFLFYSLTIIYFGCASCEG 635
+ H++ V +L++ +L + + +++++ +S + A +G
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DG 162
Query: 636 SLLASGSADCTVKLW 650
LASG D V +W
Sbjct: 163 RHLASGGNDNLVNVW 177
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497
A + +W A + KGH V + +P G AS++ D T R+W + P
Sbjct: 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
I H+S++ +++ + + + S D +++W V G R IGHR+ + +A+
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 559 GRYMASGDEDGTIMMWDLASGRCV 582
GR + S DGTI +W+ +G +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTI 213
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H + F P G+ ++SSS D +++WS K +N GH V D+ +G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
S+S D T R+W D + + + G S + + +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
Y+ G + + +V S E I + + +++ DG Y+ +G E+G
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 571 IMMWDLASGRC 581
+ WDL S C
Sbjct: 312 LAQWDLRSPEC 322
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
FIL ++ + I++ + N + H + ++F P G SSS D +IWS+
Sbjct: 109 FILGTT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
R + GH + V + + + S D T+RLW+ +G + F
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 34/136 (25%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
G+++ +++ D + I H S I L P G + S +D + +W + G
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642
L+GH + V +A I D+ G + S S
Sbjct: 172 RTLIGHRATVTDIA-------------IIDR---------------------GRNVLSAS 197
Query: 643 ADCTVKLWDVTTSTKV 658
D T++LW+ T T +
Sbjct: 198 LDGTIRLWECGTGTTI 213
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
I H+S++ +++ + + + S D +++W V G R IGHR+ + +A+
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 559 GRYMASGDEDGTIMMWDLASGRCV 582
GR + S DGTI +W+ +G +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTI 216
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H + F P G+ ++SSS D +++WS K +N GH V D+ +G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
S+S D T R+W D + + + G S + + +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
Y+ G + + +V S E I + + +++ DG Y+ +G E+G
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 571 IMMWDLASGRC 581
+ WDL S C
Sbjct: 315 LAQWDLRSPEC 325
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494
FIL ++ + I++ + N + H + ++F P G SSS D +IWS+
Sbjct: 112 FILGTT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543
R + GH + V + + + S D T+RLW+ +G + F
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 34/136 (25%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
G+++ +++ D + I H S I L P G + S +D + +W + G
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 583 TPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCASCEGSLLASGS 642
L+GH + V +A I D+ G + S S
Sbjct: 175 RTLIGHRATVTDIA-------------IIDR---------------------GRNVLSAS 200
Query: 643 ADCTVKLWDVTTSTKV 658
D T++LW+ T T +
Sbjct: 201 LDGTIRLWECGTGTTI 216
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 53/213 (24%)
Query: 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
G + + S F P F I+S S D T+ ++ + H V V++NP G
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 204
Query: 478 FASSSHDRTARIWS-MDRIQ-------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
FAS+ D T +++ +D + L+ +A H V + W + IA+ S+DKT+
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTI 263
Query: 530 RLWDVSS-------------------------------------------GECVRIFIGH 546
++W+V++ G ++ GH
Sbjct: 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
I +L+ S DG+ + S D +G I WD+++G
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 53/270 (19%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-----LNANLVCYKG 461
P G +Y HS A SP G + S +R+W T L + + G
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104
Query: 462 HNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
PV D+ ++ + A+ +R ++ D + G ++ V + + +
Sbjct: 105 ---PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161
Query: 520 -IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
I +GS D TV +++ + F H + S+ +PDG AS DGTI++++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 579 GRCVTPL-------MGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCA 631
G + H+ V+ L +
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTW---------------------------------- 247
Query: 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKT 661
S +G+ +AS SAD T+K+W+V T KV KT
Sbjct: 248 SPDGTKIASASADKTIKIWNVAT-LKVEKT 276
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 469 VQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK 527
V F P + S S D T I+ + H V VR++ + + A+ D
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212
Query: 528 TVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
T+ L++ G +F + H + L SPDG +AS D TI +W++A+ +
Sbjct: 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Query: 581 CVTPLMGHT-------SCVWT------LAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIY 627
+ T +WT ++ + N L D+V G ++ I
Sbjct: 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG---HNKAITA 329
Query: 628 FGCASCEGSLLASGSADCTVKLWDVTT 654
+S +G L S A+ + WD++T
Sbjct: 330 L-SSSADGKTLFSADAEGHINSWDIST 355
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 632 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 691
S G ASG V++WD T +T +LKT T+P S PV + +
Sbjct: 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKT-------------TIPVFSGPVKDISWDSE 114
Query: 692 NLLFAA 697
+ AA
Sbjct: 115 SKRIAA 120
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRY 561
H + V CV W + +ATGS D +V +W+++ I I H ++ + +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 562 MASGDEDGTIMMWDL 576
+ S +D I W++
Sbjct: 595 IVSAGQDSNIKFWNV 609
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
V+++ G + + + I+ ++ LR MAGH + V C+ W N + +++GS
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 529 VRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
+ DV + + GH S + LA DG +ASG D + +WD S
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 588 HTSCVWTLAY 597
H + V +A+
Sbjct: 258 HNAAVKAVAW 267
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGH 476
QGHS V ++ G + S D +++W + + HN V V + P Q +
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 477 YFASS--SHDRTARIWSMDRIQPLRIM-AGHLSDVDCVRWHINCNYIAT--GSSDKTVRL 531
A+ + D+ W+ + + AG S V + W + I + G D + +
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 532 WDVSS-GECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
W SS G ++ I H + +L A+SPDGR +++ D + W + G V
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 38/161 (23%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
V V+W + ++++ G + V ++DV S +R GH++ + L+ + ++SG
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 568 DGTIMMWDL-ASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTII 626
G I D+ + + L GH+S V LA+R
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR---------------------------- 226
Query: 627 YFGCASCEGSLLASGSADCTVKLWDVTTST-KVLKTEEKSG 666
+G LASG D V++WD +S K KT +
Sbjct: 227 ------SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567
V C+ W + N I TG + +RLW+ +G + + HR+ I+S+ + DG ++ S D
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 568 DGTIMMWDLASGRCV 582
+ ++W++ SG +
Sbjct: 170 ENVTILWNVISGTVM 184
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 404 IIGPNGRKRSYTLYQ--------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455
I GP G Y + + GH GP+ F+ +LS+S D T+R+W +
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------IQPLRIMAGHLS 506
C+ GH+ + + S S D + R+WS+ + + + I AG +S
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 113/289 (39%), Gaps = 33/289 (11%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487
++S G+ I++ + +RLW+ K A L H P+ V++N G + S +
Sbjct: 115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVT 173
Query: 488 RIWSM---DRIQPLRIMAGHLSDVDC------------VRWHINCNYIATGSSDKTVRLW 532
+W++ +Q + S ++ V W + ++ G + ++
Sbjct: 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVY 232
Query: 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592
++ IGH I L + + + S +DGT+ +W +G GH+ +
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI 292
Query: 593 ----WTLAYRFLLLVTNAYLKISDKVSTGFLFYSL---TIIYFGCASCEGSLLASGSADC 645
W + + + +++ L S+ I+ G S +G A D
Sbjct: 293 VSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352
Query: 646 TVKLWDVTTSTKVLKTEEKS-GTNRLRSLKTLPTKSTPVY-SLQFSRRN 692
V ++D+ K L ++ +S NR L LP P+Y S Q S+ N
Sbjct: 353 QVNVYDL----KKLNSKSRSLYGNRDGILNPLP---IPLYASYQSSQDN 394
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/280 (18%), Positives = 98/280 (35%), Gaps = 77/280 (27%)
Query: 323 SILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK 382
+I+ +LR+ LS+++ T N + C + S DG+ + G + L++W
Sbjct: 89 TIIAELRHPFALSASSGK---------TTNQVTCLAWSHDGNSIVTGVENGELRLW---- 135
Query: 383 LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442
N + H P+ S ++ G I+S +
Sbjct: 136 -------------------------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 443 TTIRLWS-----------------TKLNANLVCYKGHNYPVWDVQF---------NPQGH 476
LW+ + +NA + G DV++ P+G
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAE--NHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
F ++T P + GH + + ++ + + S D T+R+W +
Sbjct: 229 IFVYQITEKT----------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278
Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
G F GH I+S + D + + S DG++ +W L
Sbjct: 279 GNSQNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSL 317
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD 533
G F +T R+ D+ PL + GH + V + W N N IA+GS D TV +W+
Sbjct: 56 GGAFLVLPLGKTGRV---DKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE 110
Query: 534 VSSG-------ECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPL 585
+ G E V GH + +A P + + S D I++WD+ +G V L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWST-------KLNAN 455
+G GR ++ L GH+ PV ++ P D +++S S D T+ +W L
Sbjct: 64 LGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP 123
Query: 456 LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMAG--HLSDVDCVR 512
++ +GH V V ++P + S+ D +W + + + H + V
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183
Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECV 540
W + I T DK VR+ + G V
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
V + GH + +L +A P + +ASG ED T+M+W++ G V PL GHT
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY 597
V +A+
Sbjct: 134 VGIVAW 139
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 636 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF 695
+++ASGS DCTV +W++ VL E T TK + + + +N+L
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH------TKRVGIVAWHPTAQNVLL 148
Query: 696 AAG 698
+AG
Sbjct: 149 SAG 151
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 31/257 (12%)
Query: 348 INT--HNGLNCA-SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
INT H + CA +IS V G +KVWD++ G ++ S L D R++
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQL----DCLNRDNY 99
Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
I RS L + S L + L A T R+ + ++ CY
Sbjct: 100 I------RSCKLLPDGCTLIVGGEASTLSIWDL---AAPTPRIKAELTSSAPACYA---- 146
Query: 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524
+ +P S D +W + +R GH C+ + + TG
Sbjct: 147 ----LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 525 SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
D TVR WD+ G R H S I SL P G ++A G E + + +
Sbjct: 203 LDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K 258
Query: 583 TPLMGHTSCVWTLAYRF 599
L H SCV +L + +
Sbjct: 259 YQLHLHESCVLSLKFAY 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 11/190 (5%)
Query: 400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---- 455
P + +IGP + + + + G V A + + +++W N
Sbjct: 29 PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV 88
Query: 456 --LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-CVR 512
L C NY + + P G T IW + P RI A S C
Sbjct: 89 SQLDCLNRDNY-IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYA 146
Query: 513 WHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
I + + SD + +WD+ + VR F GH + +S DG + +G D T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 571 IMMWDLASGR 580
+ WDL GR
Sbjct: 207 VRSWDLREGR 216
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 30/239 (12%)
Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR 401
VS +N N + + DG + G S+L +WD+A TPR
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------------PTPR 132
Query: 402 EDIIGPNGRKRSYTLYQGHSGP-VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
K T S P Y+ + SP S +D I +W + ++
Sbjct: 133 --------IKAELT----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
GH + + G + D T R W + + L+ S + + + ++
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGEWL 239
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
A G V + V+ + ++ + H S +LSL + G++ S +D + W G
Sbjct: 240 AVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 29/197 (14%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII---------GPN 408
+IS D + SD ++ VWD L Q + QG D DI G +
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWD---LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 409 GRKRSYTLYQGH-------SGPVYSASFSPLGDFILSSSADTTIRLWST----KLNANLV 457
RS+ L +G + ++S + P G+++ + + + K +L
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL- 263
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
H V ++F G +F S+ D W + + S V ++
Sbjct: 264 ----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDD 318
Query: 518 NYIATGSSDKTVRLWDV 534
YI TGS DK +++V
Sbjct: 319 KYIVTGSGDKKATVYEV 335
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD 533
G F +T R+ D+ PL + GH + V + W N N IA+GS D TV +W+
Sbjct: 56 GGAFLVLPLGKTGRV---DKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110
Query: 534 VSSG-------ECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPL 585
+ G E V GH + +A P + + S D I++WD+ +G V L
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
V + GH + +L +A P + +ASG ED T+M+W++ G V PL GHT
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY 597
V +A+
Sbjct: 134 VGIVAW 139
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 42/184 (22%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGH 462
+G GR ++ L GH+ PV ++ P D +++S S D T+ +W + LV
Sbjct: 64 LGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLV----- 117
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIA 521
+ +P+ + GH V V WH N +
Sbjct: 118 -----------------------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 522 TGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
+ D + +WDV +G V + +G H I S+ S DG + + D + + +
Sbjct: 149 SAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Query: 579 GRCV 582
G V
Sbjct: 208 GTVV 211
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 574 WDLASGRC-VTPLMGHTSCVWTLAYRFLLLVTNAYLKISDKVSTGFLFYSLTIIYFGCAS 632
WD SG C V P C + FL+L ++ V L T A
Sbjct: 35 WD--SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAW 89
Query: 633 CE--GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 690
C +++ASGS DCTV +W++ VL E T TK + + +
Sbjct: 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH------TKRVGIVAWHPTA 143
Query: 691 RNLLFAAGA 699
+N+L +AG
Sbjct: 144 QNVLLSAGC 152
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 16/174 (9%)
Query: 436 ILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
IL +S + LW N L+ C H+ V V G S S D ++W
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 492 MDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHR 547
+ + L H + V CV H + +++ S D + LWD C + IG
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC-SEDNRILLWDT---RCPKPASQIGCS 211
Query: 548 S---MILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
+ + SLA P GDE+GT+ + D S CV H+ CV L +
Sbjct: 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS 491
G +S S D I++W L Y+ H V V +P + F S S D +W
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 492 MDRIQPLRIMA----GHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIGH 546
+P + G+L + WH + + G + TV L D S CV H
Sbjct: 199 TRCPKPASQIGCSAPGYLPTS--LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256
Query: 547 RSMILSLAMSPDG-RYMASGDEDGTIMMWD 575
+ L SP ++AS ED ++ + D
Sbjct: 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 475 GHYFASSSHDRTARIWSM-DRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW 532
G++ + S R W + D Q + + H V V W + + + T S DKT ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 533 DVSSGECVRIFIGHRSMILSL--AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
D+SS + ++I H + + ++ +P+ + +G D T+ WD R P+M
Sbjct: 114 DLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT---RSSNPMM 165
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
Q H+GPV +S G + ++S D T ++W N + + H+ PV + + +Y
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNY 141
Query: 478 --FASSSHDRTARIWSMDRIQPLRIM 501
+ S D+T + W P+ ++
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVL 167
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 255 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 255 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 94/263 (35%), Gaps = 73/263 (27%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
K HN V V + P + + DR A +W++ +P ++ CVRW N
Sbjct: 49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
A GS + + + W V C I RS +LSL P+ +A+G D
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCD- 163
Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK----------ISDKVSTGFL 619
F + +AY+K K+ G L
Sbjct: 164 -----------------------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194
Query: 620 FY----SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 675
+ S ++ C S GS +A S D TV L D ++ ++ T
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD---------------ADKKMAVAT 239
Query: 676 LPTKSTPVYSLQFSRRNLLFAAG 698
L +++ P+ ++ F + L AAG
Sbjct: 240 LASETLPLLAVTFITESSLVAAG 262
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQFNPQG 475
H V A F+P D+++ +SS D T++LW + K + + H PV FNP
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 476 HYFASSSHDRTA-RIW-SMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATG---- 523
++ R R++ S D +P +I+ HL+ + WH + I G
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 321
Query: 524 -----SSDKTVRLWDVSSGECV-RIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWD 575
+ +T+ ++D +SG V ++ + + I+SL SP G +ASG I++W+
Sbjct: 322 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWN 379
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQ---GHYFASSSHDRT 486
++ AD +++W K N++ Y +GH+ V DV ++P Y AS S DRT
Sbjct: 173 FVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 487 ARIWSMDRIQ-PLR---IMAGHLSDVDC-VRWHINCNYIATGSSDKTVRLW 532
IW+ D Q P + + DV W ++ N +A D V LW
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 520 IATGSSDKTVRLWDV--SSGECVRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWD 575
+AT SSDKT+++++V + + + GH + + A G +AS DG +++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 576 LASGR 580
+GR
Sbjct: 84 EENGR 88
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
+V HN + D + G A+ S D+T +I+ + + + + + GH V V W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 514 -HINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPD--GRYMASGDE 567
H I A+ S D V +W +G +I + H + + S+ +P G +
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 568 DGTIMMWDLASGRCVTPLM 586
DG + + + +P++
Sbjct: 122 DGKVSVVEFKENGTTSPII 140
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIF-IGHRSMILSLAMSPDGR 560
H++ C W ++AT S D+TV++WD+ G+ ++ + HR + + SPDG
Sbjct: 256 HVALNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 310
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGH 588
+ + D+ I ++ + C L+ H
Sbjct: 311 RLLTTDQKSEIRVYSASQWDCPLGLIPH 338
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 420 HSGPVYSASFSPLGDFIL-SSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQFNPQG 475
H V A F+P D+++ +SS D T++LW + K + + H PV FNP
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 476 HYFASSSHDRTA-RIW-SMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATG---- 523
++ R R++ S D +P +I+ HL+ + WH + I G
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 320
Query: 524 -----SSDKTVRLWDVSSGECV-RIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWD 575
+ +T+ ++D +SG V ++ + + I+SL SP G +ASG I++W+
Sbjct: 321 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWN 378
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 94/263 (35%), Gaps = 73/263 (27%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
K HN V + + P + + DR A +W++ +P ++ CVRW N
Sbjct: 49 KEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
A GS + + + W V C I RS +LSL P+ +A+G D
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCD- 163
Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYRFLLLVTNAYLK----------ISDKVSTGFL 619
F + +AY+K K+ G L
Sbjct: 164 -----------------------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194
Query: 620 FY----SLTIIYFGCASCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 675
+ S ++ C S GS +A S D TV L D ++ ++ T
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD---------------ADKKMAVAT 239
Query: 676 LPTKSTPVYSLQFSRRNLLFAAG 698
L +++ P+ ++ F + L AAG
Sbjct: 240 LASETLPLLAVTFITESSLVAAG 262
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 466 VWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD----CVRWHINCNYI 520
V DV+F+P G + + DR + + L+ + V + W ++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDL 576
AT +D T+R+WDV++ +CV+ + + + + + + +GR + S DGT+ ++L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYEL 326
Query: 577 ASGRCVTPLMGHTSCVWTLAYRFLL 601
+ + GH + L L+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 518 NYIATGSSD-KTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
NY+A G + T++++ +S E + R+ +++SP Y+A+GD G I+++D
Sbjct: 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYD 516
Query: 576 LASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL-----FYSL----TI 625
L S T TS + ++++ N D V+TG L YS+ I
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKI 576
Query: 626 IYFGCASCEG---------SLLASGSADCTVKLWDV 652
I A +G S L S AD +K W+V
Sbjct: 577 IKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 466 VWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD----CVRWHINCNYI 520
V DV+F+P G + + DR + + L+ + V + W ++
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF 267
Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDL 576
AT +D T+R+WDV++ +CV+ + + + + + + +GR + S DGT+ ++L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYEL 326
Query: 577 ASGRCVTPLMGHTSCVWTLAYRFLL 601
+ + GH + L L+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 54/282 (19%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWST----KLNANLVCY----KGHNYPV--WD 468
GH+ + + + +PL +S S D I WS+ + ++NL+ K Y WD
Sbjct: 337 GHNKGITALTVNPL----ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 392
Query: 469 VQFNPQG---HYF------ASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDCVRWH---- 514
G H F AS+++D TA + + D + L+ G + + VR +
Sbjct: 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI--IKSVRLNSPGS 450
Query: 515 ---INCNYIATGSSD-KTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
++ NY+A G + T++++ +S E + R+ +++SP Y+A+GD G
Sbjct: 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 510
Query: 570 TIMMWDLASGRCVTPLMG-HTSCVWTLAYRFLLLVTNAYLKISDKVSTGFL-----FYS- 622
I+++DL S T TS + ++++ N D V+TG L YS
Sbjct: 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570
Query: 623 ---LTIIYFGCASCEG---------SLLASGSADCTVKLWDV 652
+ II A +G S L S AD +K W+V
Sbjct: 571 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQ---GHYFASSSHDRT 486
++ AD +++W K N++ Y +GH+ V DV ++P Y AS S DRT
Sbjct: 175 FVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232
Query: 487 ARIWSMDRIQ-PLR---IMAGHLSDVDC-VRWHINCNYIATGSSDKTVRLW 532
IW+ D Q P + + DV W ++ N +A D V LW
Sbjct: 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 520 IATGSSDKTVRLWDV--SSGECVRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWD 575
+AT SSDKT+++++V + + + GH + + A G +AS DG +++W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 576 LASGRC--VTPLMGHTSCV----WTL-AYRFLLLVTNAYLKIS-----DKVSTGFLFYSL 623
+GR + H++ V W Y LLLV ++ K+S + +T +
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145
Query: 624 TIIYFGCASC---------------EGSLLASGSADCTVKLWDVTT--STKVLKTEEKSG 666
I AS E +G AD VK+W + T VL++ +
Sbjct: 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205
Query: 667 TNRLRSLKTLPT 678
++ +R + PT
Sbjct: 206 SDWVRDVAWSPT 217
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQ---GHYFASSSHDRT 486
++ AD +++W K N++ Y +GH+ V DV ++P Y AS S DRT
Sbjct: 173 FVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 487 ARIWSMDRIQ-PLR---IMAGHLSDVDC-VRWHINCNYIATGSSDKTVRLW 532
IW+ D Q P + + DV W ++ N +A D V LW
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 520 IATGSSDKTVRLWDV--SSGECVRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWD 575
+AT SSDKT+++++V + + + GH + + A G +AS DG +++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 576 LASGRC--VTPLMGHTSCV----WTL-AYRFLLLVTNAYLKIS-----DKVSTGFLFYSL 623
+GR + H++ V W Y LLLV ++ K+S + +T +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 624 TIIYFGCASC---------------EGSLLASGSADCTVKLWDVTT--STKVLKTEEKSG 666
I AS E +G AD VK+W + T VL++ +
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 667 TNRLRSLKTLPT 678
++ +R + PT
Sbjct: 204 SDWVRDVAWSPT 215
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP--DGRYMASGDEDGTIMMWD 575
+G D +V++WD+S ++ + H S + +A P D +++ G EDG I++WD
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGRILLWD 210
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 34/205 (16%)
Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
S+ DG+ G D S+KVWD L Q+AV Y
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWD---LSQKAV-------------------------LKSY 177
Query: 418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ 474
HS V + P D I LS D I LW T+ A + + + V ++P+
Sbjct: 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237
Query: 475 -GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLW 532
FA + ++ + A H ++ + + + + ++A+ S D TV +
Sbjct: 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297
Query: 533 DVSSGECVRIFIGHRSMILSLAMSP 557
D E R + HR + +A SP
Sbjct: 298 DADFSEVFRD-LSHRDFVTGVAWSP 321
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIF----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
I S V LW++ E + + H ++ +L++ DG SG +D ++ +WD
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 576 LASGRCVTPLMGHTSCV 592
L+ + H+S V
Sbjct: 168 LSQKAVLKSYNAHSSEV 184
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQ---GHYFASSSHDRT 486
++ AD +++W K N++ Y +GH+ V DV ++P Y AS S DRT
Sbjct: 173 FVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230
Query: 487 ARIWSMDRIQ-PLR---IMAGHLSDVDC-VRWHINCNYIATGSSDKTVRLW 532
IW+ D Q P + + DV W ++ N +A D V LW
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 520 IATGSSDKTVRLWDVS--SGECVRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWD 575
+AT SSDKT+++++V + + + GH + + A G +AS DG +M+W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 576 LASGRC--VTPLMGHTSCV----WTL-AYRFLLLVTNAYLKIS-----DKVSTGFLFYSL 623
+GR + H++ V W Y +LLV ++ K+S + +T +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 624 TIIYFGCASC---------------EGSLLASGSADCTVKLWDVTT--STKVLKTEEKSG 666
I AS E +G AD VK+W + T VL++ +
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 667 TNRLRSLKTLPT 678
++ +R + PT
Sbjct: 204 SDWVRDVAWSPT 215
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 436 ILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQ---GHYFASSSHDRT 486
++ AD +++W K N++ Y +GH+ V DV ++P Y AS S DRT
Sbjct: 173 FVTGGADNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRT 230
Query: 487 ARIWSMDRIQ-PLR---IMAGHLSDVDC-VRWHINCNYIATGSSDKTVRLW 532
IW+ D Q P + + DV W ++ N +A D V LW
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 488 RIWSMDRI--QPLRIMA--GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGEC-VR 541
+IW + +P +I++ G + CV H N ++ ATG D + +WDV G V
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 542 IFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS 578
+ H + + + P + ++ + EDG++ WD ++
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 495 IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMI 550
+Q ++ GH + ++ +++H + N + + S D +RLW++ + V IF GHR +
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 200
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
LS G + S D ++ +W + S R
Sbjct: 201 LSADYDLLGEKIMSCGMDHSLKLWRINSKR 230
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIM 501
G S D + ++W RI R+M
Sbjct: 207 LLGEKIMSCGMDHSLKLW---RINSKRMM 232
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 53 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 111
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 567 EDGTIMMWDLASGRCVTPLMG 587
+D + +W++ + V G
Sbjct: 172 KDHALRLWNIQTDTLVAIFGG 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 495 IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMI 550
+Q ++ GH + ++ +++H + N + + S D +RLW++ + V IF GHR +
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 159
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
LS G + S D ++ +W + S R + +
Sbjct: 160 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIM 501
G S D + ++W RI R+M
Sbjct: 166 LLGEKIMSCGMDHSLKLW---RINSKRMM 191
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 12 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 70
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 567 EDGTIMMWDLASGRCVTPLMG 587
+D + +W++ + V G
Sbjct: 131 KDHALRLWNIQTDTLVAIFGG 151
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 495 IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMI 550
+Q ++ GH + ++ +++H + N + + S D +RLW++ + V IF GHR +
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
LS G + S D ++ +W + S R + +
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIM 501
G S D + ++W RI R+M
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMM 195
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 74
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 567 EDGTIMMWDLASGRCVTPLMG 587
+D + +W++ + V G
Sbjct: 135 KDHALRLWNIQTDTLVAIFGG 155
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 495 IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMI 550
+Q ++ GH + ++ +++H + N + + S D +RLW++ + V IF GHR +
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
LS G + S D ++ +W + S R + +
Sbjct: 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIM 501
G S D + ++W RI R+M
Sbjct: 171 LLGEKIMSCGMDHSLKLW---RINSKRMM 196
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 75
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 567 EDGTIMMWDLASGRCVTPLMG 587
+D + +W++ + V G
Sbjct: 136 KDHALRLWNIQTDTLVAIFGG 156
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 495 IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMI 550
+Q ++ GH + ++ +++H + N + + S D +RLW++ + V IF GHR +
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585
LS G + S D ++ +W + S R + +
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 417 YQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFN 472
Y GH + F P + +LS S D +RLW+ + + + + +GH V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 473 PQGHYFASSSHDRTARIWSMDRIQPLRIM 501
G S D + ++W RI R+M
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMM 195
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
HN P++ VQFN FA+ +R ++ +R++ ++ +D D
Sbjct: 16 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 74
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
W + N +A S +R+ + + +C++ ++GH + I L P D + S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 567 EDGTIMMWDLASGRCVTPLMG 587
+D + +W++ + V G
Sbjct: 135 KDHALRLWNIQTDTLVAIFGG 155
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 108/287 (37%), Gaps = 58/287 (20%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN-----DTTPREDIIG----------- 406
G++ A +DSSL++W + + + LQ ++ D + II
Sbjct: 35 GTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94
Query: 407 ----PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT-TIRLWSTKLNANLVCYKG 461
N S + HS V + F+ D +L+S + I +W + N
Sbjct: 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW----DMNKCTESP 150
Query: 462 HNY-------------PVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIM------ 501
NY V + +N H FAS+ A IW + + + +
Sbjct: 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210
Query: 502 AGHLSDVDCVRWHI-NCNYIATGS---SDKTVRLWDVSSGECV--RIFIGHRSMILSLAM 555
+G + V WH N +AT + +D ++ +WD+ + + GH+ ILSL
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 556 S-PDGRYMASGDEDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYRF 599
D + S D T+++W+ S ++ P G+ W +F
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WCFKTKF 313
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 468 DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MAGHLSDVDCVRWH--INCNYIATG 523
D Q + G A+ S DR+ +I+ + + I + GH V V W + N +A+
Sbjct: 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC 77
Query: 524 SSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMM 573
S D+ V +W +G E GH S + S+ +P G +A G DG I +
Sbjct: 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 65
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEEC 93
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 613 KVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 671
++S + + +I+ AS E G ++AS S D TVKLW+ EE SG R
Sbjct: 46 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWN 99
Query: 672 SLKTLPTKSTPVYSLQFSRRNL 693
L TL +YS++F+ +L
Sbjct: 100 KLCTLNDSKGSLYSVKFAPAHL 121
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 393 QGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451
QG +D+ E + N + + + H+G V+S S++ G + S+ D +RLW
Sbjct: 275 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 334
Query: 452 LNANLVC 458
+ C
Sbjct: 335 YSNEFKC 341
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 613 KVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 671
++S + + +I+ AS E G ++AS S D TVKLW+ EE SG R
Sbjct: 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWN 101
Query: 672 SLKTLPTKSTPVYSLQFSRRNL 693
L TL +YS++F+ +L
Sbjct: 102 KLCTLNDSKGSLYSVKFAPAHL 123
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 67
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC 95
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 388 VSSGLQGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIR 446
V QG +D+ E + N + + + H+G V+S S++ G + S+ D +R
Sbjct: 272 VDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 447 LWSTKLNANLVC 458
LW + C
Sbjct: 332 LWKATYSNEFKC 343
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 613 KVSTGFLFYSLTIIYFGCASCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 671
++S + + +I+ AS E G ++AS S D TVKLW+ EE SG R
Sbjct: 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD-----QEECSG-RRWN 101
Query: 672 SLKTLPTKSTPVYSLQFSRRNL 693
L TL +YS++F+ +L
Sbjct: 102 KLCTLNDSKGSLYSVKFAPAHL 123
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLSDVDCVRWHIN 516
GH+ V DV ++ G + A+ S D+ +++ +D+ ++ H S + + W +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-AS 67
Query: 517 CNY---IATGSSDKTVRLW--DVSSGEC 539
Y IA+ S DKTV+LW D EC
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEEC 95
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 393 QGENDTTPREDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451
QG +D+ E + N + + + H+G V+S S++ G + S+ D +RLW
Sbjct: 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
Query: 452 LNANLVC 458
+ C
Sbjct: 337 YSNEFKC 343
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
H S ++SL+ + G + S DG + WD+ + +T L H
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
H S ++SL+ + G + S DG + WD+ + +T L H
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQ 274
Q N ++ WG L ++ +E TGL +D KAEG K P GG +
Sbjct: 91 QRNPADLPWGKL--GVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAK 142
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQ 274
Q N ++ WG L ++ +E TGL +D KAEG K P GG +
Sbjct: 91 QRNPADLPWGKL--GVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAK 142
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHIN 516
KG NY V+D ++ P F + + AR IQ I G L +++ + I
Sbjct: 15 KGFNYTVFDCKWVPCSAKFVTMGN--FAR--GTGVIQLYEIQHGDLKLLREIEKAK-PIK 69
Query: 517 CN----------YIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMI---------LSLAMS 556
C Y+ATG + +W++ + E V GH+ +I +
Sbjct: 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129
Query: 557 PDGRYMASGDEDGTIMMWD 575
P+ + +G DGT+ +WD
Sbjct: 130 PE---IVTGSRDGTVKVWD 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,696,035
Number of Sequences: 62578
Number of extensions: 873675
Number of successful extensions: 3813
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2240
Number of HSP's gapped (non-prelim): 584
length of query: 704
length of database: 14,973,337
effective HSP length: 106
effective length of query: 598
effective length of database: 8,340,069
effective search space: 4987361262
effective search space used: 4987361262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)